Citrus Sinensis ID: 000454
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1491 | 2.2.26 [Sep-21-2011] | |||||||
| Q8WWQ0 | 1821 | PH-interacting protein OS | yes | no | 0.377 | 0.309 | 0.323 | 9e-81 | |
| Q8VDD9 | 1821 | PH-interacting protein OS | yes | no | 0.377 | 0.309 | 0.322 | 1e-80 | |
| Q9NSI6 | 2320 | Bromodomain and WD repeat | no | no | 0.381 | 0.245 | 0.314 | 7e-80 | |
| Q921C3 | 2304 | Bromodomain and WD repeat | no | no | 0.389 | 0.251 | 0.314 | 5e-79 | |
| Q6RI45 | 1802 | Bromodomain and WD repeat | no | no | 0.389 | 0.322 | 0.309 | 1e-73 | |
| A2AHJ4 | 1799 | Bromodomain and WD repeat | no | no | 0.389 | 0.322 | 0.306 | 1e-72 | |
| Q54MP8 | 2200 | Bromodomain and WD repeat | yes | no | 0.186 | 0.126 | 0.276 | 2e-30 | |
| P25382 | 515 | Ribosome assembly protein | yes | no | 0.210 | 0.609 | 0.235 | 4e-20 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.240 | 0.234 | 0.255 | 5e-20 | |
| P38129 | 798 | Transcription initiation | no | no | 0.129 | 0.241 | 0.285 | 2e-19 |
| >sp|Q8WWQ0|PHIP_HUMAN PH-interacting protein OS=Homo sapiens GN=PHIP PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 303 bits (775), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 228/704 (32%), Positives = 328/704 (46%), Gaps = 141/704 (20%)
Query: 51 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 110
E+YFLI FL GPC + E+ E +LLPRR W G P +
Sbjct: 14 ELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTD-W-------------TGKEHPRT 59
Query: 111 YNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAA-DVPTLLGRGSFSLLSY 169
Y LV+ Y H+ DHL+++ +L ++ + P + V TLLG G SLL
Sbjct: 60 YQNLVKYYRHLAPDHLLQICHRL--------GPLLEQEIPQSVPGVQTLLGAGRQSLLRT 111
Query: 170 DRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGF-----TRHHRAPSIRAACYAIA 224
++ H+ W +G L + G + PSI ++
Sbjct: 112 NKS---------CKHVVW--------KGSALAALHCGRPPESPVNYGSPPSIADTLFSRK 154
Query: 225 ----------KPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET 274
P+ + Q M+ KR+ GH ++VYC FDR+GR + TGSDD LVKIW+ +
Sbjct: 155 LNGKYRLERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDD 214
Query: 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334
LA+ RGH +I+D+AV+ N ++A+ S D +IRVW L P++VL+GH+A++T++
Sbjct: 215 GRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQ 274
Query: 335 FSPR-PGSVYQLLSSSDDGTC--RIWDARYSQFSPR--IYIPRPSDAVAGRNMAPSSSAG 389
FSP GS L S+ DGT +WDA + +PR + RP V
Sbjct: 275 FSPLCSGSKRYLSSTGADGTICFWLWDAGTLKINPRPAKFTERPRPGV------------ 322
Query: 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449
Q+ C +F+A G TGS+D + RV+ S QP +I L H + V+ +
Sbjct: 323 ----QMICSSFSAGGMFLATGSTDHIIRVYFF------GSGQP-EKISELEFHTDKVDSI 371
Query: 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509
QFS ++RF V+ SRDG+A IW + +R K+
Sbjct: 372 QFSN--TSNRF------------------------VSGSRDGTARIW--QFKRREWKSIL 403
Query: 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569
A P G +I T V M+ W + V+ A+ + + VWN+
Sbjct: 404 LDMATR--------PAGQNLQGIEDKI--TKMKVTMVAWDRHDNTVITAVNNMTLKVWNS 453
Query: 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV 629
G L+H L GH + +VL+ HPF+PR+ SAG+DG IVWD+ G+ IR Y F ++
Sbjct: 454 YTGQLIHVLMGHEDEVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKIRSY----FNMI 509
Query: 630 DG---------KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQ-FFLGDYRPLVQD 679
+G K SPDG +D G L I G S+ D DQ FF DYRPL++D
Sbjct: 510 EGQGHGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSS-SKYDKIADQMFFHSDYRPLIRD 568
Query: 680 TYGNVLDQETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQR 721
VLD++TQ APH L P L D P+P YQ + R
Sbjct: 569 ANNFVLDEQTQQAPH---LMPPPFLVDVDGNPHPSRYQRLVPGR 609
|
Probable regulator of the insulin and insulin-like growth factor signaling pathways. Stimulates cell proliferation through regulation of cyclin transcription and has an anti-apoptotic activity through AKT1 phosphorylation and activation. Plays a role in the regulation of cell morphology and cytoskeletal organization. Homo sapiens (taxid: 9606) |
| >sp|Q8VDD9|PHIP_MOUSE PH-interacting protein OS=Mus musculus GN=Phip PE=1 SV=2 | Back alignment and function description |
|---|
Score = 302 bits (774), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 227/704 (32%), Positives = 328/704 (46%), Gaps = 141/704 (20%)
Query: 51 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 110
E+YFLI FL GPC + E+ E +LLPRR W G P +
Sbjct: 14 ELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTD-W-------------TGKEHPRT 59
Query: 111 YNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAA-DVPTLLGRGSFSLLSY 169
Y LV+ Y H+ DHL+++ +L ++ + P + V TLLG G SLL
Sbjct: 60 YQNLVKYYRHLAPDHLLQICHRL--------GPLLEQEIPQSVPGVQTLLGAGRQSLLRT 111
Query: 170 DRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGF-----TRHHRAPSIRAACYAIA 224
++ H+ W +G L + G + PSI ++
Sbjct: 112 NKS---------CKHVVW--------KGSALAALHCGRPPESPVNYGSPPSIADTLFSRK 154
Query: 225 ----------KPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET 274
P+ + Q M+ KR+ GH ++VYC FDR+GR + TGSDD LVKIW+ +
Sbjct: 155 LNGKYRLERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDD 214
Query: 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334
LA+ RGH +I+D+AV+ N ++A+ S D +IRVW L P++VL+GH+A++T++
Sbjct: 215 GRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQ 274
Query: 335 FSPR-PGSVYQLLSSSDDGTC--RIWDARYSQFSPR--IYIPRPSDAVAGRNMAPSSSAG 389
FSP GS L S+ DGT +WDA + +PR + RP V
Sbjct: 275 FSPLCSGSKRYLSSTGADGTICFWLWDAGTLKINPRPTKFTERPRPGV------------ 322
Query: 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449
Q+ C +F+A G TGS+D + RV+ S QP +I L H + V+ +
Sbjct: 323 ----QMICSSFSAGGMFLATGSTDHIIRVYFF------GSGQP-EKISELEFHTDKVDSI 371
Query: 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509
QFS ++RF V+ SRDG+A IW + +R K+
Sbjct: 372 QFSN--TSNRF------------------------VSGSRDGTARIW--QFKRREWKSIL 403
Query: 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569
A P G +I T V M+ W + V+ A+ + + VWN+
Sbjct: 404 LDMATR--------PAGQNLQGIEDKI--TKMKVTMVAWDRHDNTVITAVNNMTLKVWNS 453
Query: 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV 629
G L+H L GH + +VL+ HPF+PR+ SAG+DG IVWD+ G+ +R Y F ++
Sbjct: 454 YTGQLIHVLMGHEDEVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKVRSY----FNMI 509
Query: 630 DG---------KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQ-FFLGDYRPLVQD 679
+G K SPDG +D G L I G S+ D DQ FF DYRPL++D
Sbjct: 510 EGQGHGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSS-SKYDKIADQMFFHSDYRPLIRD 568
Query: 680 TYGNVLDQETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQR 721
VLD++TQ APH L P L D P+P YQ + R
Sbjct: 569 ANNFVLDEQTQQAPH---LMPPPFLVDVDGNPHPSRYQRLVPGR 609
|
Probable regulator of the insulin and insulin-like growth factor signaling pathways. Stimulates cell proliferation through regulation of cyclin transcription and has an anti-apoptotic activity through AKT1 phosphorylation and activation. Plays a role in the regulation of cell morphology and cytoskeletal organization. Mus musculus (taxid: 10090) |
| >sp|Q9NSI6|BRWD1_HUMAN Bromodomain and WD repeat-containing protein 1 OS=Homo sapiens GN=BRWD1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 300 bits (767), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 219/697 (31%), Positives = 330/697 (47%), Gaps = 128/697 (18%)
Query: 51 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 110
E+YFLI +LS GPC R EL ++QLLP+R W G+E++ S
Sbjct: 17 ELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLD-W-------EGNEHNR------S 62
Query: 111 YNKLVERYPHIEKDHLVKLLKQL--IINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLS 168
Y +LV H+ DHL+++ +++ +++ P P+ + V +LLG G SLL
Sbjct: 63 YEELVLSNKHVAPDHLLQICQRIGPMLDKEIP---------PSISRVTSLLGAGRQSLLR 113
Query: 169 YDRD------KGQNEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSIR-AAC 220
+D KG H R P M + L EI HR + +
Sbjct: 114 TAKDCRHTVWKGSA---FAALHRGRPPEMPVNYGSPPNLVEI-------HRGKQLTGCST 163
Query: 221 YAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS 280
++ A P TM Q ++ +R+ GH +AVYC FDR+G + TGSDD LVKIWS L++
Sbjct: 164 FSTAFPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNGRLLST 223
Query: 281 CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP- 339
RGH +I+D+AV+ N ++A+ S D IIRVW L P++VL+GHT ++T++ FSP
Sbjct: 224 LRGHSAEISDMAVNYENTMIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQFSPMAK 283
Query: 340 GSVYQLLSSSDDGTCRI--WDARYSQFSPR--IYIPRPSDAVAGRNMAPSSSAGPQSHQI 395
GS ++S+ DGT WD +FSPR + +P V Q+
Sbjct: 284 GSQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGV----------------QM 327
Query: 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455
C +F+ G TGS+D + R++ + +I L H + V+ +QF C
Sbjct: 328 LCSSFSVGGMFLATGSTDHVIRMYFL-------GFEAPEKIAELESHTDKVDSIQF--CN 378
Query: 456 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515
RF ++ SRDG+A IW R + ++ A
Sbjct: 379 NGDRF------------------------LSGSRDGTARIW--RFEQLEWRSILLDMATR 412
Query: 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV 575
+ +R + P+ V MI W+ ++ V+ A+ D + VWN+ G L+
Sbjct: 413 I---------SGDLSSEEERFM-KPK-VTMIAWNQNDSIVVTAVNDHVLKVWNSYTGQLL 461
Query: 576 HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG---- 631
H+L GH + +VL+ HPF+ RI +SAG+DG +WDI +G ++ Y F +++G
Sbjct: 462 HNLMGHADEVFVLETHPFDSRIMLSAGHDGSIFIWDITKGTKMKHY----FNMIEGQGHG 517
Query: 632 -----KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLD 686
KFS DG +D G L I G + + FF DYRPL++D+ VLD
Sbjct: 518 AVFDCKFSQDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLD 577
Query: 687 QETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQR 721
++TQ APH L P L D P+P YQ + R
Sbjct: 578 EQTQQAPH---LMPPPFLVDVDGNPHPTKYQRLVPGR 611
|
May be a transcriptional activator. May be involved in chromatin remodeling (By similarity). Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Homo sapiens (taxid: 9606) |
| >sp|Q921C3|BRWD1_MOUSE Bromodomain and WD repeat-containing protein 1 OS=Mus musculus GN=Brwd1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 297 bits (760), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 223/708 (31%), Positives = 331/708 (46%), Gaps = 128/708 (18%)
Query: 40 PAELDVDVDLREVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGD 99
PA V + E+YFLI +LS GPC R EL ++QLLP+R W G+
Sbjct: 6 PARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLD-W-------EGN 57
Query: 100 ENDDGMSFPLSYNKLVERYPHIEKDHLVKLLKQL--IINTSSPSRAMIGGDAPNAADVPT 157
E++ SY +LV H+ DHL+++ +++ +++ P P+ + V +
Sbjct: 58 EHNR------SYEELVLSNKHVAPDHLLQICQRIGPMLDKEVP---------PSISRVTS 102
Query: 158 LLGRGSFSLLSYDRD------KGQNEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRH 210
LLG G SLL +D KG H R P M + L EI
Sbjct: 103 LLGAGRQSLLRTAKDCRHTVWKGSA---FAALHRGRPPEMPVNYGPPPSLVEI------- 152
Query: 211 HRAPSIR-AACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI 269
HR + + ++ A P TM Q ++ +R+ GH +AVYC FDR+G + TGSDD LVKI
Sbjct: 153 HRGRQLTGCSTFSTAFPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKI 212
Query: 270 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAA 329
WS L++ RGH +I+D+AV+ N L+A+ S D IIRVW L P++VL+GHT +
Sbjct: 213 WSTHNGRLLSTLRGHSAEISDMAVNYENTLIAAGSCDKIIRVWCLRTCAPVAVLQGHTGS 272
Query: 330 VTAIAFSPRP-GSVYQLLSSSDDGTCRI--WDARYSQFSPR--IYIPRPSDAVAGRNMAP 384
+T++ FSP G ++S+ DGT WD +FSPR + +P V
Sbjct: 273 ITSLQFSPMAKGPQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGV------- 325
Query: 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN 444
Q+ C +F+ G TGS+D + R++ D P +I L H +
Sbjct: 326 ---------QMLCSSFSVGGMFLATGSTDHVIRMYFL------GFDAP-EKIAELESHTD 369
Query: 445 DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 504
V+ +QF C RF ++ SRDG+A IW
Sbjct: 370 KVDSIQF--CNNGDRF------------------------LSGSRDGTARIW-------- 395
Query: 505 PKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI 564
R+ Q + + P+ V MI W+ D+ V+ A+ D +
Sbjct: 396 ----RFEQLEWRSILLDMSARISGDTSSEEERFMKPK-VTMIAWNQDDSTVVTAVNDHVL 450
Query: 565 CVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624
VW++ G L+H+L GH + +VL+ HPF+ RI +SAG+DG +WDI +GI ++ Y
Sbjct: 451 KVWSSYTGQLLHNLLGHADEVFVLETHPFDSRIMLSAGHDGSIFIWDITKGIKMKHY--- 507
Query: 625 RFRLVDG---------KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRP 675
F +++G KFS DG +D G L I G + + FF DYRP
Sbjct: 508 -FNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFFHTDYRP 566
Query: 676 LVQDTYGNVLDQETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQR 721
L++D+ VLD++TQ APH L P L D P+P +Q + R
Sbjct: 567 LIRDSNNYVLDEQTQQAPH---LMPPPFLVDVDGNPHPTKFQRLVPGR 611
|
May be a transcriptional activator. May be involved in chromatin remodeling. Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Mus musculus (taxid: 10090) |
| >sp|Q6RI45|BRWD3_HUMAN Bromodomain and WD repeat-containing protein 3 OS=Homo sapiens GN=BRWD3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 279 bits (714), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 213/688 (30%), Positives = 318/688 (46%), Gaps = 107/688 (15%)
Query: 51 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 110
E+Y+LI FL +GPC+++ EL EHQL+PRR W +G S
Sbjct: 11 ELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLD-W-------------EGKEHRRS 56
Query: 111 YNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAA-DVPTLLGRGSFSLLSY 169
+ LV HI D+L+K+ +++ ++ + P + V TLLG G SLL
Sbjct: 57 FEDLVAANAHIPPDYLLKICERI--------GPLLDKEIPQSVPGVQTLLGVGRQSLLRD 108
Query: 170 DRDKGQ---NEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAK 225
+D N H R P + + V+ + I R S +
Sbjct: 109 AKDCKSTLWNGSAFAALHRGRPPELPVNYVKPPNVVNITSA--RQLTGCSRFGHIF---- 162
Query: 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE 285
PS+ Q ++ KR+ GH ++VYC FDRSGR + TGSDD LVKIW+ + LA+ RGH
Sbjct: 163 PSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHS 222
Query: 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQ 344
+I+D+AV+ N L+A+ S D ++RVW L P++VL+GH+A++T+I F P G+
Sbjct: 223 AEISDMAVNYENTLIAAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTNRY 282
Query: 345 LLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404
L S+ DGT W R R + + + P QI C +F++ G
Sbjct: 283 LTSTGADGTICFWQWHVKTMKFR-----------DRPVKFTERSRP-GVQISCSSFSSGG 330
Query: 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464
TGS+D + R++ S+ P +I L H + V VQF + RF
Sbjct: 331 MFITTGSTDHVIRIYYL------GSEVP-EKIAELESHTDKVVAVQFCNNGDSLRF---- 379
Query: 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 524
V+ SRDG+A IW + W ++ L +
Sbjct: 380 --------------------VSGSRDGTARIW-------QYQQQEW-KSIVLDMATKMTG 411
Query: 525 PQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES 584
P G + T V M+ W + V+ A+ + + VWN+ G L+H+L+GH +
Sbjct: 412 NNLPSGEDK----ITKLKVTMVAWDRYDTTVITAVNNFLLKVWNSITGQLLHTLSGHDDE 467
Query: 585 TYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG---------KFSP 635
+VL+ HPF+ RI +SAG+DG +WD+ G IR Y F +++G KFSP
Sbjct: 468 VFVLEAHPFDQRIILSAGHDGNIFIWDLDRGTKIRNY----FNMIEGQGHGAVFDCKFSP 523
Query: 636 DGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHR 695
DG +D G L + G + + FF DYRPL++D VLD++TQ APH
Sbjct: 524 DGNHFACTDSHGHLLLFGFGCSKYYEKIPDQMFFHTDYRPLIRDANNYVLDEQTQQAPH- 582
Query: 696 RNLQDP--LCDSAMIPYPEPYQTMYQQR 721
L P L D P+P +Q + R
Sbjct: 583 --LMPPPFLVDVDGNPHPTKFQRLVPGR 608
|
Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Homo sapiens (taxid: 9606) |
| >sp|A2AHJ4|BRWD3_MOUSE Bromodomain and WD repeat-containing protein 3 OS=Mus musculus GN=Brwd3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 211/688 (30%), Positives = 317/688 (46%), Gaps = 107/688 (15%)
Query: 51 EVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLS 110
E+Y+LI FL +GPC+++ EL EHQL+PRR W +G S
Sbjct: 11 ELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLD-W-------------EGKEHRRS 56
Query: 111 YNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAA-DVPTLLGRGSFSLLSY 169
+ LV HI D+L+K+ +++ ++ + P + V TLLG G SLL
Sbjct: 57 FEDLVAANAHIPPDYLLKICERI--------GPLLDKEIPQSVPGVQTLLGVGRQSLLRD 108
Query: 170 DRDKGQ---NEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAK 225
+D N H R P + + V+ + I R S + +
Sbjct: 109 AKDCKSTLWNGSAFAALHRGRPPELPVNYVKPPNVVNITSA--RQLTGCSRFSHVF---- 162
Query: 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE 285
PS+ Q ++ KR+ GH ++VYC FDRSGR + TGSDD LVKIW+ + LA+ RGH
Sbjct: 163 PSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHS 222
Query: 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQ 344
+I+D+AV+ N L+A+ S D ++RVW L P++VL+GH+A++T+I F P G+
Sbjct: 223 AEISDMAVNYENTLIAAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTTRY 282
Query: 345 LLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404
L S+ DGT W R R + + + P QI C +F++ G
Sbjct: 283 LTSTGADGTICFWQWHVKTMKFR-----------DRPVKFTERSRP-GVQISCSSFSSGG 330
Query: 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464
TGS+D + R++ S+ P +I L H + V VQF + RF
Sbjct: 331 MFITTGSTDHVIRIYYL------GSEIP-EKIAELESHTDKVVAVQFCNNGDSLRF---- 379
Query: 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 524
V+ SRDG+A IW + ++ K+ A +
Sbjct: 380 --------------------VSGSRDGTARIW--QYQQQEWKSIVLDMATKMS------- 410
Query: 525 PQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES 584
T V M+ W + V+ A+ + + VWN+ G L+H+L+GH +
Sbjct: 411 ---GNNLTSAEDKVTKLKVTMVAWDRYDTTVITAVNNFLLKVWNSVTGQLLHTLSGHDDE 467
Query: 585 TYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG---------KFSP 635
+VL+ HPF+ RI +SAG+DG +WD+ G IR Y F +++G KFSP
Sbjct: 468 VFVLEAHPFDQRIILSAGHDGNIFIWDLDRGTKIRNY----FNMIEGQGHGAVFDCKFSP 523
Query: 636 DGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHR 695
DG +D G L + G + + FF DYRPL++D VLD++TQ APH
Sbjct: 524 DGNHFACTDSHGHLLLFGFGCSKYYEKIPDQMFFHTDYRPLIRDANNYVLDEQTQQAPH- 582
Query: 696 RNLQDP--LCDSAMIPYPEPYQTMYQQR 721
L P L D P+P +Q + R
Sbjct: 583 --LMPPPFLVDVDGNPHPTKFQRLVPGR 608
|
Plays a role in the regulation of cell morphology and cytoskeletal organization. Required in the control of cell shape. Mus musculus (taxid: 10090) |
| >sp|Q54MP8|Y5837_DICDI Bromodomain and WD repeat-containing DDB_G0285837 OS=Dictyostelium discoideum GN=DDB_G0285837 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 153/333 (45%), Gaps = 55/333 (16%)
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450
++++I N GT+ V S D+ ++W+ P ++ L GH + +Q
Sbjct: 549 KTNEITGTTMNKGGTLIV-ASVDSSLKIWSTLF-------NPPKLVNTLEGHPTTILALQ 600
Query: 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510
+S + D IV+ S DG+ IIW H +W
Sbjct: 601 YSHGS--------------------------DAIVSGSYDGTVIIW------RHSGGPKW 628
Query: 511 TQA-YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569
+++K P P+ ++ + ++WS D+RF++ + I VWN+
Sbjct: 629 DHVIFNIK---NTQRPNQANSHPK-KVARSKATFKNVIWSHDDRFIITTDYNM-IRVWNS 683
Query: 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS----R 625
DGS + HT YV HPF+ R+ MS+GYD + I+W I G I+ + + +
Sbjct: 684 LDGSFHLEMAEHTSEVYVTSCHPFDSRLIMSSGYDSQVILWSIETGEIIKKFVLQEPGFQ 743
Query: 626 FRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKY----DQFFLGDYRPLVQDTY 681
+++DG FSPDG I+++ G+ ++ G G + K +Q+FL DY PL++D
Sbjct: 744 CQILDGCFSPDGQKFIVTNSTGKWFMFELGLGSDINNLKKLVPNEQYFLTDYHPLIRDAN 803
Query: 682 GNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPY 714
GNVLD+ TQ PH + L + +PYP+ Y
Sbjct: 804 GNVLDELTQTPPHLM-PRAMLVNYQGLPYPDHY 835
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P25382|NLE1_YEAST Ribosome assembly protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSA4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 93/395 (23%), Positives = 167/395 (42%), Gaps = 81/395 (20%)
Query: 239 VRGHRNAVYCAIFD-RSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN 297
+ GH + + C+ F + ++TG+ D +IW +T + + +GH + ++ S +
Sbjct: 139 IAGHGSTILCSAFAPHTSSRMVTGAGDNTARIWDCDTQTPMHTLKGHYNWVLCVSWSPDG 198
Query: 298 ALVASASNDCIIRVWRLPDGLPIS-VLRGHTAAVTAIAFSP----RPGSVYQLLSSSDDG 352
++A+ S D IR+W G + LRGH+ +T++++ P +PGS +L SSS DG
Sbjct: 199 EVIATGSMDNTIRLWDPKSGQCLGDALRGHSKWITSLSWEPIHLVKPGSKPRLASSSKDG 258
Query: 353 TCRIWD--ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410
T +IWD +R Q++ ++G ++ + C + G ++ +G
Sbjct: 259 TIKIWDTVSRVCQYT-----------MSG-----------HTNSVSCVKWGGQGLLY-SG 295
Query: 411 SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470
S D RVW D + I++L H + VN++ S + + K+ S
Sbjct: 296 SHDRTVRVW--------DINSQGRCINILKSHAHWVNHLSLSTDYALRIGAFDHTGKKPS 347
Query: 471 TPK------FKN-SWFCHDN------IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517
TP+ +N C N +VT S D + +W P
Sbjct: 348 TPEEAQKKALENYEKICKKNGNSEEMMVTASDDYTMFLWNPLKSTK-------------- 393
Query: 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS 577
P R+ + VN + +S D R++++A D I +W+ DG + +
Sbjct: 394 --------------PIARMTGHQKLVNHVAFSPDGRYIVSASFDNSIKLWDGRDGKFIST 439
Query: 578 LTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612
GH S Y + + R+ +S D VWD+
Sbjct: 440 FRGHVASVYQV-AWSSDCRLLVSCSKDTTLKVWDV 473
|
Involved in processing and efficient intra-nuclear transport or pre-60S ribosomal subunits. Forms a complex with REA1 which is essential for ATP-dependent dissociation of a group of nonribosomal factors from the pre-60S particle. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 111/434 (25%), Positives = 172/434 (39%), Gaps = 76/434 (17%)
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
+GH VY F+ G + TGS D+ V++W + ++ C +GH + + SS+ A+
Sbjct: 987 QGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAM 1046
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
+AS S+D +R+W + G + L+GHT+ V ++ FSP L S DD R+WD
Sbjct: 1047 LASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGA---MLASGGDDQIVRLWD- 1102
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419
++ N + G S F F+ NG GSSD + R+W
Sbjct: 1103 -----------------ISSGN-CLYTLQGYTSWVRF-LVFSPNGVTLANGSSDQIVRLW 1143
Query: 420 NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVAS-------RFSLADSSKEDS 470
+ + L GH N VN V FS G +AS R SSK
Sbjct: 1144 DISSKKC---------LYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLY 1194
Query: 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530
+ SW N V + DGS + S S W
Sbjct: 1195 ILQGHTSWV---NSVVFNPDGSTL----ASGSSDQTVRLWEI------------------ 1229
Query: 531 GPRQRILPTPRG----VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTY 586
+ L T +G VN +V++ D + + D + +W+ + +H+ GHT +
Sbjct: 1230 -NSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTN--W 1286
Query: 587 VLDVHPFNPRIAMSAGYDGKTIV--WDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSD 644
V V FNP +M A G V W+I + ++ + FSPDG +
Sbjct: 1287 VNSV-AFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGS 1345
Query: 645 DVGQLYILNTGQGE 658
D + + + GE
Sbjct: 1346 DDQTVRLWSISSGE 1359
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P38129|TAF5_YEAST Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 28/221 (12%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN 296
K + GH VY F +Y+++GS+D+ V++WSM+T L S +GH + D++ S
Sbjct: 519 KTLVGHSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPL 578
Query: 297 NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
A+AS+D R+W P+ + GH V ++F P V+ + S D TCR+
Sbjct: 579 GHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVF---TGSSDKTCRM 635
Query: 357 WDARYSQFSPRIYI----PRPSDAVA--GRNMAPSSS------------------AGPQS 392
WD S R+++ P S AV GR ++ S G
Sbjct: 636 WDVSTGD-SVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGK 694
Query: 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433
+ I+ +++ G V ++G +D RVW+ K T+ S +P+
Sbjct: 695 NAIYSLSYSKEGNVLISGGADHTVRVWDLKKATTEPSAEPD 735
|
Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modification (histone acetylation by TAF1), facilitation of DNA opening and initiation of transcription. SAGA is involved in RNA polymerase II-dependent transcriptional regulation of approximately 10% of yeast genes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction (SPT3, SPT8 and SPT20) and promoter selectivity, interaction with transcription activators (GCN5, ADA2, ADA3 and TRA1), and chromatin modification through histone acetylation (GCN5) and deubiquitination (UBP8). SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA via upstream activating sequences (UASs). SALSA, an altered form of SAGA, may be involved in positive transcriptional regulation. SLIK is proposed to have partly overlapping functions with SAGA. It preferentially acetylates methylated histone H3, at least after activation at the GAL1-10 locus. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1491 | ||||||
| 225431924 | 1756 | PREDICTED: uncharacterized protein LOC10 | 0.971 | 0.824 | 0.708 | 0.0 | |
| 356558137 | 1773 | PREDICTED: uncharacterized protein LOC10 | 0.958 | 0.805 | 0.619 | 0.0 | |
| 296083262 | 1569 | unnamed protein product [Vitis vinifera] | 0.790 | 0.750 | 0.732 | 0.0 | |
| 356532519 | 1777 | PREDICTED: uncharacterized protein LOC10 | 0.963 | 0.808 | 0.626 | 0.0 | |
| 225437555 | 1766 | PREDICTED: uncharacterized protein LOC10 | 0.959 | 0.810 | 0.606 | 0.0 | |
| 449433431 | 1729 | PREDICTED: uncharacterized protein LOC10 | 0.954 | 0.823 | 0.606 | 0.0 | |
| 255556344 | 1519 | WD-repeat protein, putative [Ricinus com | 0.647 | 0.635 | 0.786 | 0.0 | |
| 297743976 | 1549 | unnamed protein product [Vitis vinifera] | 0.718 | 0.691 | 0.692 | 0.0 | |
| 42568419 | 1677 | WD40/YVTN repeat and Bromo-WDR9-I-like d | 0.919 | 0.817 | 0.575 | 0.0 | |
| 297795697 | 1662 | transducin family protein [Arabidopsis l | 0.908 | 0.814 | 0.575 | 0.0 |
| >gi|225431924|ref|XP_002277060.1| PREDICTED: uncharacterized protein LOC100248159 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1931 bits (5002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1067/1505 (70%), Positives = 1196/1505 (79%), Gaps = 57/1505 (3%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MAL+KYIPS DAPS +MKPLSFSSKV E QLA + S + DVD+DLREVYFLIMHFL
Sbjct: 1 MALQKYIPSGDAPSVSMKPLSFSSKVQEKVQLADPEGSPTMDADVDIDLREVYFLIMHFL 60
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S GPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGL SGDENDDG SFPLSYNKLVERYPH
Sbjct: 61 SAGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLRSGDENDDGSSFPLSYNKLVERYPH 120
Query: 121 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 180
I KDHLVKLLKQLI++T+ PS+ MI G+ PNAADVPTLLG GSFSLL D DKG NE++
Sbjct: 121 IGKDHLVKLLKQLILSTTHPSQGMIRGNVPNAADVPTLLGTGSFSLLGNDMDKGHNEVNP 180
Query: 181 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 240
PP HMRWPHM ADQVRGL LREIGGGFTRH+RAPSIRAACYA+AKPSTMVQKMQNIK++R
Sbjct: 181 PPIHMRWPHMQADQVRGLSLREIGGGFTRHNRAPSIRAACYAVAKPSTMVQKMQNIKKLR 240
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
GHRNAVYCAIFDR+GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV
Sbjct: 241 GHRNAVYCAIFDRTGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
AS+SNDCIIRVWRLPDGLPISVLRGHT AVTAIAFSPRP SVYQLLSSSDDGTCRIWDAR
Sbjct: 301 ASSSNDCIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGTCRIWDAR 360
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLAR--- 417
YSQFSPRIY+PRP D++AG+N PSSS GPQSHQIFCCAFNANGTVFVTGSSDTLAR
Sbjct: 361 YSQFSPRIYVPRPPDSIAGKNNVPSSSNGPQSHQIFCCAFNANGTVFVTGSSDTLARVHL 420
Query: 418 ---VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474
VWNACK N D+SDQPNHE+D+LSGHENDVNYVQFSGCAV+SRFS+A+SSKE++ PKF
Sbjct: 421 MISVWNACKSNPDESDQPNHEMDILSGHENDVNYVQFSGCAVSSRFSVAESSKEENVPKF 480
Query: 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534
KNSWF HDNIVTCSRDGSAIIWIPRSRRSH K RWT+AYHLKVPPPPMPPQPPRGGPRQ
Sbjct: 481 KNSWFTHDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPPRGGPRQ 540
Query: 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594
RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA DGSLVHSLTGHTESTYVLDVHPFN
Sbjct: 541 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTESTYVLDVHPFN 600
Query: 595 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654
PRIAMSAGYDGKTIVWDIWEG PIRIY+ +RF+LVDGKFSPDG SIILSDDVGQLYIL+T
Sbjct: 601 PRIAMSAGYDGKTIVWDIWEGTPIRIYDTARFKLVDGKFSPDGTSIILSDDVGQLYILST 660
Query: 655 GQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPY 714
GQGESQKDA YDQFFLGDYRPL+QDTYGNVLDQETQLAP+RRN+QD LCD+ MIPYPEPY
Sbjct: 661 GQGESQKDAMYDQFFLGDYRPLIQDTYGNVLDQETQLAPYRRNMQDLLCDATMIPYPEPY 720
Query: 715 QTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWE 774
Q+MYQQRRLGALGIEWRPSSL+LAVGPDF+LDQ YQ+ PL DLDV+IDPLPEFIDVMDWE
Sbjct: 721 QSMYQQRRLGALGIEWRPSSLRLAVGPDFNLDQDYQMLPLPDLDVLIDPLPEFIDVMDWE 780
Query: 775 PENEVQSDDNDSEYNVAEEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRK 833
PENEVQ+DD DSEYNV EEYST E+GSLSS SSGD ECSAEDS+ + DGLRRSKRK
Sbjct: 781 PENEVQTDDTDSEYNVTEEYSTGGEQGSLSSNSSGDPECSAEDSDVENSHKDGLRRSKRK 840
Query: 834 KQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRA 893
KQKAE EIMT SGRRVKRR LDE +GN+ N RTRKS + +K S + SS SKSLRPQRA
Sbjct: 841 KQKAETEIMTFSGRRVKRRNLDEFDGNSLRSN-RTRKSRSGRKVSHKNSSKSKSLRPQRA 899
Query: 894 AARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKG 953
AARNA + FS++ G STDGED DGSEG+LSESES L+DS IES+ES SL NEQ KHSKG
Sbjct: 900 AARNALTLFSRMKGTSTDGEDEDGSEGDLSESESSLEDSNIESDESDGSLQNEQCKHSKG 959
Query: 954 KGISLDDSEDVTKL-DTPESHVNAG-IRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIG 1011
K +SLD+ ED+ K + PES +NAG RRLVLK P+RDSN+ L NQ ++G
Sbjct: 960 KEVSLDEFEDMDKQHEHPESCMNAGNRRRLVLKFPIRDSNRLLLAPE-----NQ-ADLVG 1013
Query: 1012 TSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKI 1071
+SS+A QEA+E N N +S SS DANC +ERR RGQ +K+ED+L+L GYKDGKI
Sbjct: 1014 SSSKAPQEASEVNRNHLSSQDLGYSSSDANCNRIERRERGQPEKIEDHLDLFEGYKDGKI 1073
Query: 1072 RWGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEEI 1131
RWGGV+AR+SKRL++ E MP D + S +D E+ +NG +PEK+ IS EI
Sbjct: 1074 RWGGVKARTSKRLRVVEPMPSDTDARSRQCIDGHDATENTINGFQEPEKNYDRISPHSEI 1133
Query: 1132 TNCGDNTDEVPLKNVKNLSGENNDVYSGDASCK-EQQSGFSELNYYDE-SKCVNTTDEDT 1189
+ T ++ N ++ N V DA+ ++ S F+E YDE K VN DT
Sbjct: 1134 KYHVEETGKMAHMNGQHFG--NGAVEGLDATSNGKKHSSFNECMNYDEPPKQVNMVAGDT 1191
Query: 1190 TPYPNHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDAD----------VENQNNG-CD 1238
NGT P LKE T STKLRIRSK+IL D + VE+ +NG CD
Sbjct: 1192 AASSVQHSNGTDHPPHLKESSTS-STKLRIRSKKILEDPEIPSDPKIKSSVEDWSNGRCD 1250
Query: 1239 ALHGSSLDIKPNSLPEVLESDGTNRTSSDRG-ADGSQRLNAQIDSTSEHDPLGSHSHSHD 1297
L S L+I EV + D T+R SD G +G + A I+ S S D
Sbjct: 1251 TLSESQLEIA-----EVPDCDDTDRPHSDHGDWNGLLKSEAAIEQNSR-------SVLQD 1298
Query: 1298 PLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGGGVGESTLNANNNN------FHESAT 1351
G +SH ++ KM+N VYRRS++ R RTNSEG+GGG+ EST NA+N+N FHE+ T
Sbjct: 1299 SQGLYSHVNN-KMYNAVYRRSRSYRTRTNSEGEGGGMEESTSNASNHNLDSGMDFHEATT 1357
Query: 1352 DGSRRTRSMGLKTTTCDPDNVSSNLRLEQHNQPEDMYSGHNR-STSRC-QLPHEEWGSSS 1409
DG+RRTRSMGLK TT DPD SNL+L + ED ++ S +R +LP EEW SSS
Sbjct: 1358 DGARRTRSMGLKATTRDPDVTCSNLKLRLGHGSEDTLKSVDKFSVNRSDELPCEEWMSSS 1417
Query: 1410 KMTVGLRSTRNRRTSYLFCDS--SPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEV 1467
+MTVGLRS RNRR SY D+ SP++RRK HQS +K SWLMLS H E RYIPQLGDEV
Sbjct: 1418 RMTVGLRSARNRRASYHVRDTSPSPMERRKPHQSSKKVSWLMLSMHVE-PRYIPQLGDEV 1476
Query: 1468 VYLRQ 1472
VYLRQ
Sbjct: 1477 VYLRQ 1481
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558137|ref|XP_003547364.1| PREDICTED: uncharacterized protein LOC100818665 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1743 bits (4515), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 955/1541 (61%), Positives = 1135/1541 (73%), Gaps = 112/1541 (7%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MAL+KY PS +APS MK LSFSSKV + A+L ++ + +DVD+DLRE+YFLIMHFL
Sbjct: 1 MALQKYAPSGNAPSVNMKHLSFSSKVPKKAELDEANLNH--NMDVDIDLREIYFLIMHFL 58
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S GPCH+T+ QFWNELLEHQLLPRRYHAWYSR+G SGD++DDG+SFPL+YN LVERY H
Sbjct: 59 SAGPCHKTHLQFWNELLEHQLLPRRYHAWYSRTGACSGDKDDDGLSFPLNYNMLVERYSH 118
Query: 121 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 180
IEKDHLVKLLKQL++NT+SPS M G+APNAADVPTLLG GSFSLLSYDRDK E+
Sbjct: 119 IEKDHLVKLLKQLLLNTASPSLGMNLGNAPNAADVPTLLGSGSFSLLSYDRDK-MKEVKW 177
Query: 181 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 240
PP HMRWPHM A+QV GL LREIGGGF RHHRAPSIRAACYAIAKPSTMVQKMQNIKR+R
Sbjct: 178 PPPHMRWPHMKANQVHGLNLREIGGGFPRHHRAPSIRAACYAIAKPSTMVQKMQNIKRLR 237
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
GHRNAVYCAIFDR+GRYVITGSDDRLVKIWSMETAYCLASCRGH+GDITDLAVSSNNALV
Sbjct: 238 GHRNAVYCAIFDRAGRYVITGSDDRLVKIWSMETAYCLASCRGHDGDITDLAVSSNNALV 297
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
AS+SNDC+IRVWRLPDGLPISVLRGHT AVTAIAFSPRP +VYQLLSSSDDGTCRIWDAR
Sbjct: 298 ASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDAR 357
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV-- 418
Y+Q SPR+Y+PRPSD+V G++ PSSS PQSHQIFCCAFNANGTVFVTGSSD LARV
Sbjct: 358 YTQSSPRLYVPRPSDSVIGKSNGPSSSTVPQSHQIFCCAFNANGTVFVTGSSDNLARVFL 417
Query: 419 --WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 476
WNACK + DD+ QP HEIDVLSGHENDVNYVQFSGCAVASRFS A++ KE++ PKFKN
Sbjct: 418 QVWNACKLSMDDTGQPVHEIDVLSGHENDVNYVQFSGCAVASRFSTAETWKEENIPKFKN 477
Query: 477 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536
SW HDNIVTCSRDGSAIIWIP+SRRSH K+ RWT+AYHL+VPPPPMPPQP RGGPRQRI
Sbjct: 478 SWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQRI 537
Query: 537 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596
LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHTESTYVLDVHPFNPR
Sbjct: 538 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPR 597
Query: 597 IAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656
IAMSAGYDG+TIVWDIWEG+PIR YEISRF+LVDGKFSPDG SIILSDDVGQLYIL+TGQ
Sbjct: 598 IAMSAGYDGRTIVWDIWEGLPIRTYEISRFKLVDGKFSPDGTSIILSDDVGQLYILSTGQ 657
Query: 657 GESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQT 716
GESQKDAKYDQFFLGDYRPL+QDT+GNVLDQETQ+ P+RR+LQD LCDSAMIPYPEPYQ+
Sbjct: 658 GESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRSLQDLLCDSAMIPYPEPYQS 717
Query: 717 MYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPE 776
+QQRRLGALG EWRPSSL+LAVGPDFSLD Y + PLADLD++ +PLPEFID M+WEPE
Sbjct: 718 EFQQRRLGALGFEWRPSSLRLAVGPDFSLDPDYHMLPLADLDLLTEPLPEFIDAMEWEPE 777
Query: 777 NEVQSDDNDSEYNVAEEYSTE-EKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQ 835
EV SDD DSEYNV E++S++ EKG SS +SGDS CS ++SE + MD +RRSKRKKQ
Sbjct: 778 VEVFSDDTDSEYNVTEDFSSKGEKGCSSSNASGDSGCSTDNSEGEDTCMDNIRRSKRKKQ 837
Query: 836 KAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAA 895
K E E+MTSSGRRVKRR LDE +GN FG+ R+RK + QK+ RRKSS SKS RPQRAAA
Sbjct: 838 KTETEVMTSSGRRVKRRNLDERDGN-TFGSSRSRKGKSVQKTLRRKSSKSKSSRPQRAAA 896
Query: 896 RNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKGKG 955
RNA FSKITG TDGE+ D G+ S SES LQ+S I+S+ES +L NEQ +SKGK
Sbjct: 897 RNALHLFSKITGTPTDGEE-DSLVGDFSGSESTLQESNIDSDESDGTLQNEQLNYSKGKE 955
Query: 956 ISLDDSEDVTKLDTPESHVN-AGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSS 1014
+S +SE+ + E+HVN RRLVLKLP RD +K ++++ + ++G+SS
Sbjct: 956 VSYYESENTKSHELTETHVNLMNKRRLVLKLPNRDISK------STNEFDYQTELVGSSS 1009
Query: 1015 EAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWG 1074
++ QEAT+ NGN S + S + +E + + D++ D+++L GKIRWG
Sbjct: 1010 KSSQEATDFNGNGPSSKDSGYYSGSTSYPTVETTDQAKLDQVTDHVDLL-----GKIRWG 1064
Query: 1075 GVRARSSKRLKIGEMMPLDANNGSGI---HLDDDKEKESEVNGHVKPEKDGIDISCGEEI 1131
VRARSSK L++GE MP D N SG HLD EKE+ +GH K +K+ ++ EI
Sbjct: 1065 MVRARSSKPLRVGEAMPSDTNPYSGKCPNHLD---EKENVGSGHEKEDKNFSALTPELEI 1121
Query: 1132 TNCGDNTDEVPLKNVKNLSGENNDVYSG------DASCKEQQSGFSELNYYDES------ 1179
D+ L ++ ++ E +V SG +AS + + +Y +S
Sbjct: 1122 -----QKDDHKLDSLTEINYEKENVSSGHEKEDKNASALTPELEIQKDDYKVDSLTEINE 1176
Query: 1180 KCVNTTDEDTTP-------------------------YPNHLQNGTIQPSELKEI----- 1209
C TT + P P + +I SE+ ++
Sbjct: 1177 NCAGTTSQPFNPTEDGREITASSNCRDKDESLISAYVIPQDIVPASISYSEVDQLPELNI 1236
Query: 1210 -LTPVSTKLRIRSKRILRDADVEN---------QNNGCDALHGSSLDIKPNSLPEVLESD 1259
V TKL RSKR RD + + +N+ C ++ + N V++
Sbjct: 1237 GFPSVLTKL--RSKRGSRDPESPSKHETKSSVLKNSACSTNDKNNFN---NEQHVVVDDH 1291
Query: 1260 GTNRTSSDRGADGSQRLNAQI--DSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRR 1317
R +S++G +GSQ ++ QI +STS+ P HS KM+ VYRR
Sbjct: 1292 NNTRVASNQGENGSQEVDPQIRQNSTSQDLP-------------EPHSQRDKMYKAVYRR 1338
Query: 1318 SKTNRDRTNSEGDGGGVGESTLNANNNNFHESA------TDGSRRTRSMGLKTTTCDPDN 1371
S+++R TN D G GE N N+NF+ +A + S+ L+ TTCDP+
Sbjct: 1339 SRSHRAVTNL-ADSSGQGEFNSNGRNSNFNATANFSNGTNEAIHTNGSLELEPTTCDPNY 1397
Query: 1372 VSSNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDSS 1431
+NL++ Q + S N STS QL EE GS+SK+TVGLRS RNRR+SY C++S
Sbjct: 1398 ERNNLKVLQGPGNCMVKSPQNVSTSGGQLTEEERGSNSKLTVGLRSNRNRRSSYNICETS 1457
Query: 1432 PIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQ 1472
P+++RK+ QS +GSWL+LSTHEEG RYIPQ GDEV YLRQ
Sbjct: 1458 PVNKRKSLQSATRGSWLLLSTHEEGCRYIPQQGDEVAYLRQ 1498
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083262|emb|CBI22898.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1741 bits (4508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 923/1260 (73%), Positives = 1015/1260 (80%), Gaps = 82/1260 (6%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MAL+KYIPS DAPS +MKPLSFSSKV E QLA + S + DVD+DLREVYFLIMHFL
Sbjct: 1 MALQKYIPSGDAPSVSMKPLSFSSKVQEKVQLADPEGSPTMDADVDIDLREVYFLIMHFL 60
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S GPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGL SGDENDDG SFPLSYNKLVERYPH
Sbjct: 61 SAGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLRSGDENDDGSSFPLSYNKLVERYPH 120
Query: 121 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 180
I KDHLVKLLKQLI++T+ PS+ MI G+ PNAADVPTLLG GSFSLL D DKG NE++
Sbjct: 121 IGKDHLVKLLKQLILSTTHPSQGMIRGNVPNAADVPTLLGTGSFSLLGNDMDKGHNEVNP 180
Query: 181 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 240
PP HMRWPHM ADQVRGL LREIGGGFTRH+RAPSIRAACYA+AKPSTMVQKMQNIK++R
Sbjct: 181 PPIHMRWPHMQADQVRGLSLREIGGGFTRHNRAPSIRAACYAVAKPSTMVQKMQNIKKLR 240
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
GHRNAVYCAIFDR+GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV
Sbjct: 241 GHRNAVYCAIFDRTGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
AS+SNDCIIRVWRLPDGLPISVLRGHT AVTAIAFSPRP SVYQLLSSSDDGTCRIWDAR
Sbjct: 301 ASSSNDCIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGTCRIWDAR 360
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
YSQFSPRIY+PRP D++AG+N PSSS GPQSHQIFCCAFNANGTVFVTGSSDTLARVWN
Sbjct: 361 YSQFSPRIYVPRPPDSIAGKNNVPSSSNGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
Query: 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480
ACK N D+SDQPNHE+D+LSGHENDVNYVQFSGCAV+SRFS+A+SSKE++ PKFKNSWF
Sbjct: 421 ACKSNPDESDQPNHEMDILSGHENDVNYVQFSGCAVSSRFSVAESSKEENVPKFKNSWFT 480
Query: 481 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540
HDNIVTCSRDGSAIIWIPRSRRSH K RWT+AYHLKVPPPPMPPQPPRGGPRQRILPTP
Sbjct: 481 HDNIVTCSRDGSAIIWIPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTP 540
Query: 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 600
RGVNMIVWSLDNRFVLAAIMDCRICVWNA DGSLVHSLTGHTESTYVLDVHPFNPRIAMS
Sbjct: 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTESTYVLDVHPFNPRIAMS 600
Query: 601 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 660
AGYDGKTIVWDIWEG PIRIY+ +RF+LVDGKFSPDG SIILSDDVGQLYIL+TGQGESQ
Sbjct: 601 AGYDGKTIVWDIWEGTPIRIYDTARFKLVDGKFSPDGTSIILSDDVGQLYILSTGQGESQ 660
Query: 661 KDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQ 720
KDA YDQFFLGDYRPL+QDTYGNVLDQETQLAP+RRN+QD LCD+ MIPYPEPYQ+MYQQ
Sbjct: 661 KDAMYDQFFLGDYRPLIQDTYGNVLDQETQLAPYRRNMQDLLCDATMIPYPEPYQSMYQQ 720
Query: 721 RRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQ 780
RRLGALGIEWRPSSL+LAVGPDF+LDQ YQ+ PL DLDV+IDPLPEFIDVMDWEPENEVQ
Sbjct: 721 RRLGALGIEWRPSSLRLAVGPDFNLDQDYQMLPLPDLDVLIDPLPEFIDVMDWEPENEVQ 780
Query: 781 SDDNDSEYNVAEEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEV 839
+DD DSEYNV EEYST E+GSLSS SSGD ECSAEDS+ + DGLRRSKRKKQKAE
Sbjct: 781 TDDTDSEYNVTEEYSTGGEQGSLSSNSSGDPECSAEDSDVENSHKDGLRRSKRKKQKAET 840
Query: 840 EIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNAR 899
EIMT SGRRVKRR LDE +GN+ N RTRKS + +K S + SS SKSLRPQRAAARNA
Sbjct: 841 EIMTFSGRRVKRRNLDEFDGNSLRSN-RTRKSRSGRKVSHKNSSKSKSLRPQRAAARNAL 899
Query: 900 SFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKGKGISLD 959
+ FS++ G STDGED DGSEG+LSESES L+DS IES+ES SL NEQ KHSKGK +SLD
Sbjct: 900 TLFSRMKGTSTDGEDEDGSEGDLSESESSLEDSNIESDESDGSLQNEQCKHSKGKEVSLD 959
Query: 960 DSEDVTKL-DTPESHVNAG-IRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSSEAH 1017
+ ED+ K + PES +NAG RRLVLK P+RDSN+ L NQ ++G+SS+A
Sbjct: 960 EFEDMDKQHEHPESCMNAGNRRRLVLKFPIRDSNRLLLAPE-----NQ-ADLVGSSSKAP 1013
Query: 1018 QEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVR 1077
QEA+E RGQ +K+ED+L+L GYKDGKIRWGGV+
Sbjct: 1014 QEASE---------------------------RGQPEKIEDHLDLFEGYKDGKIRWGGVK 1046
Query: 1078 ARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEEITNCGDN 1137
AR+SKRL++ E MP D + S +D E+ +NG +PEK+ IS EI
Sbjct: 1047 ARTSKRLRVVEPMPSDTDARSRQCIDGHDATENTINGFQEPEKNYDRISPHSEI------ 1100
Query: 1138 TDEVPLKNVKNLSGENNDVYSGDASCKEQQSGFSELNYYDE-SKCVNTTDEDTTPYPNHL 1196
K S F+E YDE K VN DT
Sbjct: 1101 --------------------------KYHHSSFNECMNYDEPPKQVNMVAGDTAASSVQH 1134
Query: 1197 QNGTIQPSELKEILTPVSTKLRIRSKRILRDAD----------VENQNNGCDALHGSSLD 1246
NGT P LKE T STKLRIRSK+IL D + VE+ +NG D H ++ D
Sbjct: 1135 SNGTDHPPHLKESSTS-STKLRIRSKKILEDPEIPSDPKIKSSVEDWSNGMD-FHEATTD 1192
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532519|ref|XP_003534819.1| PREDICTED: uncharacterized protein LOC100819598 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1739 bits (4503), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 964/1538 (62%), Positives = 1133/1538 (73%), Gaps = 102/1538 (6%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAE-LDVDVDLREVYFLIMHF 59
MAL+KY PS +APS +K LSFSSKV + A+L D + P +DVD+DLRE+YFLIMHF
Sbjct: 1 MALQKYAPSGNAPSVNIKHLSFSSKVPKKAEL---DEANPNHNMDVDIDLREIYFLIMHF 57
Query: 60 LSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYP 119
LS GPCH+TY QFWNELLEHQLLPRRYHAWYSR+G SGD++DDG+SFPL+YN LVERY
Sbjct: 58 LSAGPCHKTYIQFWNELLEHQLLPRRYHAWYSRTGACSGDKDDDGLSFPLNYNMLVERYS 117
Query: 120 HIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEID 179
HIEKDHLVKLLKQL++NT+SPS M G+APNAADVPTLLG GSFSLLSYDRDK E+
Sbjct: 118 HIEKDHLVKLLKQLLLNTASPSLGMNLGNAPNAADVPTLLGSGSFSLLSYDRDK-MKEVK 176
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
PP HMRWPHM A+QV GL LREIGGGF RHHRAPSIRAACYA+AKPSTMVQKMQNIKR+
Sbjct: 177 RPPPHMRWPHMKANQVHGLSLREIGGGFPRHHRAPSIRAACYALAKPSTMVQKMQNIKRL 236
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
RGHRNAVYCAIFDRSGRYV+TGSDDRLVKIWSMETAYCLASCRGH+GDITDLAVSSNNAL
Sbjct: 237 RGHRNAVYCAIFDRSGRYVVTGSDDRLVKIWSMETAYCLASCRGHDGDITDLAVSSNNAL 296
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
VAS+SNDC+IRVWRLPDGLPISVLRGHT AVTAIAFSPR ++YQLLSSSDDGTCRIWDA
Sbjct: 297 VASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRLNALYQLLSSSDDGTCRIWDA 356
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV- 418
RY+Q SPR+Y+PRPSD+V G++ PSSS PQS QIFCCAFNANGTVFVTGSSD LARV
Sbjct: 357 RYTQSSPRLYVPRPSDSVIGKSSGPSSSTVPQSRQIFCCAFNANGTVFVTGSSDNLARVF 416
Query: 419 ---WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
WNACK + DD+DQP HEIDVLSGHENDVNYVQFSGCAVASRFS A++ KE++ PKFK
Sbjct: 417 LQVWNACKLSMDDTDQPIHEIDVLSGHENDVNYVQFSGCAVASRFSTAETLKEENIPKFK 476
Query: 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535
NSW HDNIVTCSRDGSAIIWIP+SRRSH K+ RWT+AYHL+VPPPPMPPQP RGGPRQR
Sbjct: 477 NSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQR 536
Query: 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595
ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHTESTYVLDVHPFNP
Sbjct: 537 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNP 596
Query: 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655
RIAMSAGYDG+TIVWDIWEG+PIR YEISRF+LVDGKFS DG SIILSDDVGQLYIL+TG
Sbjct: 597 RIAMSAGYDGRTIVWDIWEGMPIRTYEISRFKLVDGKFSSDGTSIILSDDVGQLYILSTG 656
Query: 656 QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 715
QGESQKDAKYDQFFLGDYRPL+QDT+GNVLDQETQ+ P+RRNLQD LCDSAMIPYPEPYQ
Sbjct: 657 QGESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRNLQDLLCDSAMIPYPEPYQ 716
Query: 716 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEP 775
+ +QQRRLGALG+EWRPSSL+LAVGPDFSLD Y + PLADLD++ +PLPEFID M+WEP
Sbjct: 717 SEFQQRRLGALGLEWRPSSLRLAVGPDFSLDPDYHMLPLADLDLLTEPLPEFIDAMEWEP 776
Query: 776 ENEVQSDDNDSEYNVAEEY-STEEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKK 834
E EV SDD DSEYNV E + S EKG SS +SGDS CS ++SE + MD +RRSKRKK
Sbjct: 777 EVEVFSDDTDSEYNVTEGFFSKGEKGGSSSNASGDSGCSTDNSEGEDTCMDSIRRSKRKK 836
Query: 835 QKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAA 894
QKAE E+MTSSGRRVKRR LDE +GN FG+ R+RK + QK+SRRKSS SKS RPQRAA
Sbjct: 837 QKAETEVMTSSGRRVKRRNLDERDGNT-FGSSRSRKGKSVQKTSRRKSSKSKSSRPQRAA 895
Query: 895 ARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKGK 954
ARNA FSKITG TDGE+ D G+ S SES LQ+S I+S+ESG +L NEQ +SKGK
Sbjct: 896 ARNALHLFSKITGTPTDGEE-DSLVGDFSGSESTLQESNIDSDESGGTLQNEQLNYSKGK 954
Query: 955 GISLDDSEDVTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSS 1014
+S +SED + E+HVN+ +RLVLKLP RD +K ++++ ++G+SS
Sbjct: 955 EVSYYESEDTKSHELTETHVNSMNKRLVLKLPNRDISK------STNEFGYQAELVGSSS 1008
Query: 1015 EAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWG 1074
+ QEAT+ NGNR S + S + +E+ + + ++ D+++L GKIRWG
Sbjct: 1009 KTAQEATDFNGNRPSSKDSGYCSGSTSYPAVEKTDQAKLGQVTDHVDLL-----GKIRWG 1063
Query: 1075 GVRARSSKRLKIGEMMPLDANNGSGI---HLDDDKEKESEVNGH-------------VKP 1118
VRARSSK L++GE MP D + SG HLD EKE+ +GH V P
Sbjct: 1064 MVRARSSKPLRVGEAMPSDTDPYSGKCPNHLD---EKENVSSGHEKEDKNFSALTPEVTP 1120
Query: 1119 E----KDGIDISCGEEITNCGDNTDEVPLKNVKNLSGEN----------NDVYSGDA--S 1162
E KD + EI +N K KN S D Y D+
Sbjct: 1121 ELEIHKDDYRVDSLTEINGKKENAISGHEKEDKNFSALTPELTPELEIQKDDYKVDSLTE 1180
Query: 1163 CKEQQSGFSE--LNYYDE-------SKCVNTTDEDTTPY--PNHLQNGTIQPSELKEILT 1211
E +G + N ++ S C + + + Y P + +I SE+ ++
Sbjct: 1181 INENCAGTTSQPFNLTEDGGEITASSNCRDKNESLISAYVIPQDIVTASIGYSEVDQLPE 1240
Query: 1212 P------VSTKLRIRSKRILRDADVENQ-NNGCDALHGSSLDIKPN-SLPEVLESDGTN- 1262
P VSTKLR SKR RD + ++ L S+ N +L V+ D N
Sbjct: 1241 PNIGFACVSTKLR--SKRGSRDPESPSKLETKSSVLKNSACSTNDNKNLNNVVVDDSNNT 1298
Query: 1263 RTSSDRGADGSQRLNAQI--DSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSKT 1320
R +S+ G +GSQ ++ QI +STS+ P HSH KM+ VYRRS++
Sbjct: 1299 RVASNHGENGSQEVDPQIRQNSTSQDLP-------------EPHSHRDKMYKAVYRRSRS 1345
Query: 1321 NRDRTNSEGDGGGVGESTLNANNNNFHESAT------DGSRRTRSMGLKTTTCDPDNVSS 1374
+R TN D G GES N N+NF+ +A + S+ L+ T+ DP+ +
Sbjct: 1346 HRAVTNL-ADSSGQGESNSNGRNSNFNAAANFSNGTYEAIHTNGSLELEPTSSDPNYERN 1404
Query: 1375 NLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDSSPID 1434
NL++ Q + S N STS QL EE S+SK+TVGLRSTRNRR+SY ++SP++
Sbjct: 1405 NLKVLQGPGNCIVKSPQNVSTSGGQLTEEERCSNSKLTVGLRSTRNRRSSYNIRETSPVN 1464
Query: 1435 RRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQ 1472
+RK+ QS +GSWL+LSTHEEG RYIPQ GDEVVYLRQ
Sbjct: 1465 KRKSLQSATRGSWLLLSTHEEGCRYIPQQGDEVVYLRQ 1502
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437555|ref|XP_002270469.1| PREDICTED: uncharacterized protein LOC100248563 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1651 bits (4275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 929/1533 (60%), Positives = 1098/1533 (71%), Gaps = 102/1533 (6%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
M +K S++APS +M PLSFS+K+HE Q +T DVD+DLREVYFLIMHFL
Sbjct: 1 MDFQKCKSSSEAPSLSMVPLSFSNKLHERPQCQERNTDHVVA-DVDIDLREVYFLIMHFL 59
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S GPC +T+GQFWNELLEH+LLPRRYHAWYSRSG SGDEND+G SFPL YN LVERYPH
Sbjct: 60 SAGPCQKTFGQFWNELLEHELLPRRYHAWYSRSGACSGDENDNGFSFPLGYNNLVERYPH 119
Query: 121 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 180
I KDHLVKLLKQL++NT+ P +GG+AP+A DVPTLLG GSFSLL + K ++
Sbjct: 120 IGKDHLVKLLKQLMLNTAPPLHGEVGGNAPSAVDVPTLLGTGSFSLLDCHKKKENKQVKP 179
Query: 181 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 240
PP ++RWPHM ADQVRGL LREIGGGFT+HHRAPSIR+ACYAIAKPSTMVQ+MQN+K++R
Sbjct: 180 PPDYLRWPHMQADQVRGLSLREIGGGFTKHHRAPSIRSACYAIAKPSTMVQRMQNMKKLR 239
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
GHR+AVYCAIFDRSGRYVITGSDDRLVKIWSMETA+CLASCRGHEGDITDLAVSSNN LV
Sbjct: 240 GHRDAVYCAIFDRSGRYVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNVLV 299
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
ASASND IIRVWRLPDGLPISVLRGHT AVTAIAFSPRP SVYQLLSSSDDG+CRIWDAR
Sbjct: 300 ASASNDFIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGSCRIWDAR 359
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPS-----SSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415
+SQ SPRIY+P+P DAVAG+N PS SS GPQSHQI CCAFNA+GTVFVTGSSDT
Sbjct: 360 FSQCSPRIYLPKPPDAVAGKNSVPSMNGTSSSNGPQSHQILCCAFNASGTVFVTGSSDTF 419
Query: 416 ARV---WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472
ARV W+ACK +TDDS+QPNHEIDVLSGHENDVNYVQFS CA ASR S++D+ KE+S P
Sbjct: 420 ARVHQVWSACKSSTDDSEQPNHEIDVLSGHENDVNYVQFSACAGASRSSVSDTFKEESLP 479
Query: 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532
KFKNSWFCHDNIVTCSRDGSAIIWIPRSRR H K RWT+AYHLKVPPPPMPPQPPRGGP
Sbjct: 480 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRYHGKVGRWTRAYHLKVPPPPMPPQPPRGGP 539
Query: 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592
RQR+LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH+ STYVLDVHP
Sbjct: 540 RQRLLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHSASTYVLDVHP 599
Query: 593 FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYIL 652
FNPRIAMSAGYDGKTIVWDIWEGIPIR YEI RF+LVDGKFSPDG SI+LSDDVGQ+Y+L
Sbjct: 600 FNPRIAMSAGYDGKTIVWDIWEGIPIRTYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLL 659
Query: 653 NTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPE 712
NTGQGESQKDAKYDQFFLGDYRPL++DT GNVLDQETQLAPHRRN+QDPLCDS+MIPY E
Sbjct: 660 NTGQGESQKDAKYDQFFLGDYRPLIRDTIGNVLDQETQLAPHRRNIQDPLCDSSMIPYSE 719
Query: 713 PYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMD 772
PYQTMYQQRRLGALGIEW PSS+ LAVGPDFSL Q YQ+ PLADLD +++PLPE +D +
Sbjct: 720 PYQTMYQQRRLGALGIEWHPSSINLAVGPDFSLGQEYQMPPLADLDRVMEPLPELVDAVY 779
Query: 773 WEPENEVQSDDNDSEYNVAEEYSTE-EKGSLSSTSS-GDSECSAEDSEDGENPMDGLRRS 830
WEPENEV SDD DSEYN+AEEYS+E E GSLS+ SS D ECSAED++ + DGLRRS
Sbjct: 780 WEPENEVISDDTDSEYNIAEEYSSEGEHGSLSAASSFSDPECSAEDTDVEHSHKDGLRRS 839
Query: 831 KRKKQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRP 890
+RKK ++EVEIMTSSGRRVKRR L+E +G ++ RT+KS N +K S+R SS +SLRP
Sbjct: 840 RRKKYRSEVEIMTSSGRRVKRRNLNECDGTSS--RSRTKKSKNGRKVSKRNSSKIQSLRP 897
Query: 891 QRAAARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKH 950
QRAA RNA + FS+IT ST+G+D +G E + S S+ +QDS +++ +S R+L N Q+K+
Sbjct: 898 QRAAKRNALNMFSQITETSTEGDDEEGLEDDSSGSDPMIQDSNMQNTKSDRNLQNVQQKY 957
Query: 951 SKGKGISLDDSEDVTKLDTPESHVNAG-IRRLVLKLPVRDSNKHELQERTSDKCNQLVSV 1009
+G+ SL++ E+ K PES NAG RRLVLK +RDS K E T KCN +
Sbjct: 958 QRGEQSSLNEFENAIKF--PESQSNAGNRRRLVLKFSLRDSKKSIPSEDTRPKCNTQADI 1015
Query: 1010 IGTSSE-AHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQF------DKLEDYLNL 1062
+ + S + E N +S + S A+ + R F ++ ED+L+
Sbjct: 1016 VHSPSRPPPKTVEEKETNLISEDPESSSMHAADLEQSQNHNRDDFIHKPRSEETEDHLDT 1075
Query: 1063 SNGYKDGKIRWGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDG 1122
S GYKD KIRWG V+ARSSKR + G+ + DA G + D ++NG KPE +G
Sbjct: 1076 SAGYKDNKIRWGEVKARSSKRFRSGDFVASDACTGFDVSFDVHNGNGKDINGQTKPE-NG 1134
Query: 1123 IDISCGEEITNCGDNTDEVPLKNVKNLSG--------ENNDVY-SGDASCKEQQSGFSEL 1173
S EI N E ++V+ +NN++ G+A+ G S L
Sbjct: 1135 CGNSSPSEIQNHAGELLEKLGRDVEPFGTGLENKDDVKNNELAPPGEANKSSSFQGLSLL 1194
Query: 1174 NYY------------------------DESKCVNTTDEDTTPYPNHLQNGTIQPSELKEI 1209
+ + DE + ++ + D T NH +LK
Sbjct: 1195 DDHQKIDASAISSNGNLNKQHKGWSGSDEFRDCDSLEMDETVGINHSH-------DLKGN 1247
Query: 1210 LTPVSTKLRIRSKRILRDADVENQNNGCDALHGSSLDIKPNSLPEVLESDGTNRTSSDRG 1269
S KLRIRSKRI+RD + P+ L V ++ + D
Sbjct: 1248 PPANSLKLRIRSKRIVRDPNF------------------PSKLKFVTGTEEPSNIGGDLM 1289
Query: 1270 ADGSQRL-NAQIDSTSEHDPLGSHSHSHDPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSE 1328
+ R+ + QI E D + S P SHS S ++ ++ V++R+K+ RTN+E
Sbjct: 1290 SRSHSRMEHNQISEVPEEDKVIEMPSS--PHRSHSDS-DKQNYDAVHKRAKSYMARTNAE 1346
Query: 1329 GDGGGVGESTLNANNNN------FHESATDGSRRTRSMGLKTTTCDPDNVSSNLRL-EQH 1381
G GG + ES NA N N FHE+ TD RTRSM TT+ +P+NV S ++ E+
Sbjct: 1347 GYGGSMEESASNAGNYNYDSGIDFHEATTDAVHRTRSMVRDTTSQEPNNVMSRFKVREET 1406
Query: 1382 NQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTSYLFCDS--SPIDRRKTH 1439
++ + YS R QL EEW SSS+M V RSTR RR Y D+ SP R ++
Sbjct: 1407 SKNAENYSKKTRD----QLQSEEWMSSSRMRVRSRSTRYRRGDY---DNYLSPSAGRISN 1459
Query: 1440 QSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQ 1472
S RK SWLMLS HEEG RYIPQ GDEVVYLRQ
Sbjct: 1460 FSGRKVSWLMLSEHEEGYRYIPQQGDEVVYLRQ 1492
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433431|ref|XP_004134501.1| PREDICTED: uncharacterized protein LOC101214610 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1650 bits (4272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 909/1500 (60%), Positives = 1089/1500 (72%), Gaps = 77/1500 (5%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MALRK++ PS +K SF K+HE Q +T++ E DV++D REVYFLIMHFL
Sbjct: 1 MALRKFV-CGSTPSINLKHSSFPIKLHEQTQFEEPETNRTLEPDVEIDPREVYFLIMHFL 59
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S+GPC RT G W+EL EHQLLPRRYHAWYSR+G+ SG ENDDG+SFPLSY LVERYPH
Sbjct: 60 SSGPCLRTCGLLWDELFEHQLLPRRYHAWYSRNGVHSGHENDDGLSFPLSYQHLVERYPH 119
Query: 121 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 180
++K+HL+KLLKQLI+N + PSR M GG APNAADVPTLLG G+FSLLSYD+ +G ++
Sbjct: 120 VDKNHLIKLLKQLILNKAPPSRGMSGGIAPNAADVPTLLGTGTFSLLSYDKHEGVSKPSG 179
Query: 181 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 240
PPAHMRWPHM AD VRGL LREIGGGF+RH RAPS+RAACYAIAKPSTMVQKMQNIKR+R
Sbjct: 180 PPAHMRWPHMKADSVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKRLR 239
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
GHRNAVYCAIFDR+GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA+V
Sbjct: 240 GHRNAVYCAIFDRAGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVV 299
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
AS+SND +IRVWRLPDGLPISVLRGHT AVTAIAFSPR + YQLLSSSDDGTCRIWDAR
Sbjct: 300 ASSSNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPR--AAYQLLSSSDDGTCRIWDAR 357
Query: 361 YS-QFSPRIYIPRPSDAVAG----RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415
S Q +PRIY+P+P D+V G RN S S PQSHQIFCCAFNA GT+FVTGSSDTL
Sbjct: 358 SSSQSAPRIYVPKPLDSVTGWLISRNGGSSVSTLPQSHQIFCCAFNACGTIFVTGSSDTL 417
Query: 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
ARVW+ACK N D+ DQPNHEIDVL+GHENDVNYVQFSGCAVASRF+ D +KED+ KFK
Sbjct: 418 ARVWSACKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDVAKEDNVHKFK 477
Query: 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535
NSWF +DNIVTCSRDGSAIIW+PRSRRSH K RWT+AYHLKVPPPPMPPQP RGGPRQR
Sbjct: 478 NSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQR 537
Query: 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595
ILPTPRGVNMI+WSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHTESTYVLDVHPFNP
Sbjct: 538 ILPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNP 597
Query: 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655
RIAMSAGYDGKTIVWDIWEG PIRIYEIS F+LVDGKFS DG SIILSDDVGQLYIL+TG
Sbjct: 598 RIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTG 657
Query: 656 QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 715
QGESQ+DAKYDQFFLGDYRPL+QD GNV+DQETQL+ +RRNLQD L DS MIPYPEPYQ
Sbjct: 658 QGESQQDAKYDQFFLGDYRPLIQDPSGNVIDQETQLSTYRRNLQDLLSDSGMIPYPEPYQ 717
Query: 716 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEP 775
T YQQRRLGA+ +EWRPSSLKL+VGPDF+LD YQL PLADLD++++PLP+ +D MDW P
Sbjct: 718 TAYQQRRLGAMSVEWRPSSLKLSVGPDFNLDPDYQLLPLADLDMLVEPLPDIVDAMDWGP 777
Query: 776 ENEVQSDDNDSEYNVAEEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKK 834
ENEVQS+D DSEYNV E+YST E+ SL+S S D ECS+ED+ + P DGLRRSKRKK
Sbjct: 778 ENEVQSEDTDSEYNVTEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADGLRRSKRKK 837
Query: 835 QKAEVEIMTSSGRRVKRRILDESEGNAAFGNK-RTRKSGNRQKSSRRKSSTSKSLRPQRA 893
QKA++E+MTSSGRRVKRR +DE EG+A ++ R KSG++ S SKSLRPQRA
Sbjct: 838 QKADMEVMTSSGRRVKRRNMDEYEGDAIRSSRNRKSKSGHKPSKK---KSASKSLRPQRA 894
Query: 894 AARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKG 953
AARNAR++ S G STDGE+ S G+ SESES L+DS IES+E RSL N + KHSKG
Sbjct: 895 AARNARNWISSFKGKSTDGEEEYESGGDCSESESTLEDSDIESDEYERSLQN-RIKHSKG 953
Query: 954 KGISLDDSEDVTK-LDTPESHVNAGIR-RLVLKLPVRDSNKHELQERTSDKCNQLVSVIG 1011
K + L +E++TK LD PES V+AG R +L++K V++ NK + T+ C+ V
Sbjct: 954 KEVFLYGAEEITKSLDVPESRVDAGNRKKLIVKFSVKNLNKGDPPLSTALSCSNTADVAS 1013
Query: 1012 TSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKI 1071
+SS + +E E + N V R QF ++ +L+ Y +G I
Sbjct: 1014 SSSRSPKEVIETSQNLV-------------------RSERQFVNIDGNSDLTEVYTNGNI 1054
Query: 1072 RWGGVRARSSKRLKIGEMMPLDANN-GSGIHLDDDKEKESEVNGHVKPEKDGIDISCGEE 1130
RWGG R RSSKR++ G+ MP DA S + D E E+ V+ +++ E S +
Sbjct: 1055 RWGGSRVRSSKRIRFGDTMPSDAYAVSSSLPNGDHNENENAVHEYLERENHFGAPSPHAK 1114
Query: 1131 ITN-CGDNTDEVPLKNVK----NLSGENND-VYSGDASCKEQQSGFSELNYYDESKCVNT 1184
+ N C D D V +K N SG + + V G+ C G S+ +D+S +
Sbjct: 1115 VVNFCSDEMDTVSPTKLKEEDDNASGHSQEMVNGGELKC----VGNSKSCDHDDSNNLIM 1170
Query: 1185 TDEDTTPYPNHLQNGTIQPSELKEILTPVSTKLRIRS---------KRILRDADVENQNN 1235
D T +QNGT P E E P+ K+R +S K + D ++N+
Sbjct: 1171 FSSDAT--TTSIQNGTHAP-EQTENTAPMRKKIRFKSISLDPEHSLKHKIESLDESSKND 1227
Query: 1236 GCDALHGSSLDIKPNSLPEVLESDGTNRTSSDRGADGSQRLNAQIDSTSEHDPLGSHSHS 1295
+ + GS PN L + + TN T SD + + ++ +D P+ + +S
Sbjct: 1228 EYNTVSGSPQ--HPNGLKDSV----TNETYSDLRNNCPEDMDIAVD----EKPVSTLCNS 1277
Query: 1296 HDPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGGGVGESTL-NANNNNFHESATDGS 1354
+ ++ KM+ VY RSK+N+ ++N + +G GE L N++ +S
Sbjct: 1278 SELQAVETN----KMYTAVYTRSKSNKGKSNIDSNGCASGEHALGNSSLPADADSHKIML 1333
Query: 1355 RRTRSMGLKTTTCDPDNVSSNLRLEQHNQPEDM--YSGHNRSTSRCQLPHEEWGSSSKMT 1412
R+ RS+ K ++ D +NV +L+ ++ + E SG N S R +P EEWGSSS+MT
Sbjct: 1334 RKARSIRFKESSYDLNNVGDDLKSDEDQELEQKSRRSG-NSSADRSHIPSEEWGSSSRMT 1392
Query: 1413 VGLRSTRNRRTSYLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQ 1472
VG RSTRNRR + L D +P+DRRK+ Q RKGSWLM+ HE GSRYIPQLGDEV YLRQ
Sbjct: 1393 VGSRSTRNRRGT-LIQDINPVDRRKSVQYARKGSWLMMPAHEGGSRYIPQLGDEVAYLRQ 1451
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556344|ref|XP_002519206.1| WD-repeat protein, putative [Ricinus communis] gi|223541521|gb|EEF43070.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1533 bits (3969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 777/988 (78%), Positives = 860/988 (87%), Gaps = 22/988 (2%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MALRKYIPS DAPS MKPL FS K HEN Q A ++T P DVD+DLREVYFLIMHFL
Sbjct: 1 MALRKYIPSDDAPSLGMKPLRFSKKAHENGQDADAETRVPH--DVDIDLREVYFLIMHFL 58
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S GPCHRTYGQFWNELLEHQLLPRRYHAWYSR+G SGDENDDG SFPLSYNKLVERYPH
Sbjct: 59 SAGPCHRTYGQFWNELLEHQLLPRRYHAWYSRNGAHSGDENDDGASFPLSYNKLVERYPH 118
Query: 121 IEKDHLVKLLKQLII-----------NTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSY 169
+EKDHLVKLLKQL++ NT S S+ ++G NAA VPTLLG G+FSLLS
Sbjct: 119 VEKDHLVKLLKQLLLTDAASQGLADDNTESSSQGLVGSRVLNAAHVPTLLGTGAFSLLSD 178
Query: 170 DRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTM 229
D+DKG++++ HPPAHMRWPHM ADQVRGL LREIGGGF RHHRAPSIRAACY IAKP+TM
Sbjct: 179 DKDKGEDQVKHPPAHMRWPHMSADQVRGLSLREIGGGFPRHHRAPSIRAACYTIAKPATM 238
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
VQKMQNIKR+RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA+CLASCRGHEGDIT
Sbjct: 239 VQKMQNIKRLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAFCLASCRGHEGDIT 298
Query: 290 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349
DLAVSSNN LVASASNDCIIRVWRLPDGLPISVLRGHT AVTAIAFSPRPGSVYQLLSSS
Sbjct: 299 DLAVSSNNTLVASASNDCIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPGSVYQLLSSS 358
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409
DDGTCRIWDARYS FSPR+YIPRP D++AG+N SSS+GPQ+HQIFCCAFNANGTVFVT
Sbjct: 359 DDGTCRIWDARYSNFSPRLYIPRPLDSLAGKNSGASSSSGPQTHQIFCCAFNANGTVFVT 418
Query: 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469
GSSD LARVWNACK N DDSDQPNHEIDVLSGH NDVNYVQFSGCAVASR SL+DSSKE+
Sbjct: 419 GSSDNLARVWNACKSNMDDSDQPNHEIDVLSGHGNDVNYVQFSGCAVASRLSLSDSSKEE 478
Query: 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529
+ PKF+NSWF HDNIVTCSRDGSA+IW+P+SRRSH KA RWT+ Y LK+P PP+PPQPPR
Sbjct: 479 NVPKFRNSWFSHDNIVTCSRDGSAMIWVPKSRRSHGKAGRWTRLYQLKIPAPPVPPQPPR 538
Query: 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD 589
GGPRQRILPTPRGVNMI+WSLDNRFVLAA+MDCRICVWNAADG +VHSLTGHT+STYVLD
Sbjct: 539 GGPRQRILPTPRGVNMIIWSLDNRFVLAAVMDCRICVWNAADGGIVHSLTGHTDSTYVLD 598
Query: 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQL 649
VHPFNPRIAMSAGYDG+TIVWDIWEG PIRIYEISRF+LVDGKFSPDG SIILSDDVGQL
Sbjct: 599 VHPFNPRIAMSAGYDGRTIVWDIWEGTPIRIYEISRFKLVDGKFSPDGTSIILSDDVGQL 658
Query: 650 YILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIP 709
YILNTGQGESQ+DAKYDQFFLGDYRP++QDTYGNVLDQETQL P+RRN+QD LCDS M P
Sbjct: 659 YILNTGQGESQQDAKYDQFFLGDYRPVIQDTYGNVLDQETQLVPYRRNMQDLLCDSGMNP 718
Query: 710 YPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFID 769
YPEPYQ+MYQ+RRLGAL ++W+P S+KLAVGPDFSLD YQ+ PLADLDV+++PLPEF+D
Sbjct: 719 YPEPYQSMYQKRRLGALNMDWKPPSIKLAVGPDFSLDPEYQMLPLADLDVLVEPLPEFVD 778
Query: 770 VMDWEPENEVQSDDNDSEYNVAEEYST-EEKGSLSSTSSGDSECSAEDSE-DGENPMDGL 827
VMDWEPENEVQSDDNDSEYNV EEYS+ E+GSL+S+SS D +CS+E SE +G+ D
Sbjct: 779 VMDWEPENEVQSDDNDSEYNVTEEYSSGGEQGSLNSSSSVDPDCSSEGSEIEGK---DSF 835
Query: 828 RRSKRKKQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKS 887
RS RKKQKAE+EIMTSSGRRVKRR LDE GN F + RTRKS +K+S+ KSS K+
Sbjct: 836 HRSTRKKQKAEIEIMTSSGRRVKRRNLDECVGN-TFRSHRTRKSKIGRKTSKAKSSMLKA 894
Query: 888 LRPQRAAARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQ 947
LRPQRAAARNA S FSKITG ++ GED D SE + SESES Q S I+S+ES RSL N Q
Sbjct: 895 LRPQRAAARNALSLFSKITGTASGGEDGDSSEIDSSESESMQQQSDIQSDESERSLQNAQ 954
Query: 948 RKHSKGKGISLDDSEDVTKLDTPESHVN 975
++ KGK +SL E+ T +TP++ N
Sbjct: 955 NRNMKGKEVSL---EEDTGAETPQAANN 979
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743976|emb|CBI36946.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1497 bits (3875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 780/1127 (69%), Positives = 886/1127 (78%), Gaps = 56/1127 (4%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
M +K S++APS +M PLSFS+K+HE Q +T DVD+DLREVYFLIMHFL
Sbjct: 1 MDFQKCKSSSEAPSLSMVPLSFSNKLHERPQCQERNTDHVVA-DVDIDLREVYFLIMHFL 59
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S GPC +T+GQFWNELLEH+LLPRRYHAWYSRSG SGDEND+G SFPL YN LVERYPH
Sbjct: 60 SAGPCQKTFGQFWNELLEHELLPRRYHAWYSRSGACSGDENDNGFSFPLGYNNLVERYPH 119
Query: 121 IEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDH 180
I KDHLVKLLKQL++NT+ P +GG+AP+A DVPTLLG GSFSLL + K ++
Sbjct: 120 IGKDHLVKLLKQLMLNTAPPLHGEVGGNAPSAVDVPTLLGTGSFSLLDCHKKKENKQVKP 179
Query: 181 PPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR 240
PP ++RWPHM ADQVRGL LREIGGGFT+HHRAPSIR+ACYAIAKPSTMVQ+MQN+K++R
Sbjct: 180 PPDYLRWPHMQADQVRGLSLREIGGGFTKHHRAPSIRSACYAIAKPSTMVQRMQNMKKLR 239
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
GHR+AVYCAIFDRSGRYVITGSDDRLVKIWSMETA+CLASCRGHEGDITDLAVSSNN LV
Sbjct: 240 GHRDAVYCAIFDRSGRYVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNVLV 299
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
ASASND IIRVWRLPDGLPISVLRGHT AVTAIAFSPRP SVYQLLSSSDDG+CRIWDAR
Sbjct: 300 ASASNDFIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPSSVYQLLSSSDDGSCRIWDAR 359
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPS-----SSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415
+SQ SPRIY+P+P DAVAG+N PS SS GPQSHQI CCAFNA+GTVFVTGSSDT
Sbjct: 360 FSQCSPRIYLPKPPDAVAGKNSVPSMNGTSSSNGPQSHQILCCAFNASGTVFVTGSSDTF 419
Query: 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
ARVW+ACK +TDDS+QPNHEIDVLSGHENDVNYVQFS CA ASR S++D+ KE+S PKFK
Sbjct: 420 ARVWSACKSSTDDSEQPNHEIDVLSGHENDVNYVQFSACAGASRSSVSDTFKEESLPKFK 479
Query: 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535
NSWFCHDNIVTCSRDGSAIIWIPRSRR H K RWT+AYHLKVPPPPMPPQPPRGGPRQR
Sbjct: 480 NSWFCHDNIVTCSRDGSAIIWIPRSRRYHGKVGRWTRAYHLKVPPPPMPPQPPRGGPRQR 539
Query: 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595
+LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH+ STYVLDVHPFNP
Sbjct: 540 LLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHSASTYVLDVHPFNP 599
Query: 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655
RIAMSAGYDGKTIVWDIWEGIPIR YEI RF+LVDGKFSPDG SI+LSDDVGQ+Y+LNTG
Sbjct: 600 RIAMSAGYDGKTIVWDIWEGIPIRTYEIGRFKLVDGKFSPDGTSIVLSDDVGQIYLLNTG 659
Query: 656 QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 715
QGESQKDAKYDQFFLGDYRPL++DT GNVLDQETQLAPHRRN+QDPLCDS+MIPY EPYQ
Sbjct: 660 QGESQKDAKYDQFFLGDYRPLIRDTIGNVLDQETQLAPHRRNIQDPLCDSSMIPYSEPYQ 719
Query: 716 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEP 775
TMYQQRRLGALGIEW PSS+ LAVGPDFSL Q YQ+ PLADLD +++PLPE +D + WEP
Sbjct: 720 TMYQQRRLGALGIEWHPSSINLAVGPDFSLGQEYQMPPLADLDRVMEPLPELVDAVYWEP 779
Query: 776 ENEVQSDDNDSEYNVAEEYSTE-EKGSLSSTSS-GDSECSAEDSEDGENPMDGLRRSKRK 833
ENEV SDD DSEYN+AEEYS+E E GSLS+ SS D ECSAED++ + DGLRRS+RK
Sbjct: 780 ENEVISDDTDSEYNIAEEYSSEGEHGSLSAASSFSDPECSAEDTDVEHSHKDGLRRSRRK 839
Query: 834 KQKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRA 893
K ++EVEIMTSSGRRVKRR L+E +G ++ RT+KS N +K S+R SS +SLRPQRA
Sbjct: 840 KYRSEVEIMTSSGRRVKRRNLNECDGTSS--RSRTKKSKNGRKVSKRNSSKIQSLRPQRA 897
Query: 894 AARNARSFFSKITGASTDGEDVDGSEGELSESESDLQDSYIESEESGRSLLNEQRKHSKG 953
A RNA + FS+IT ST+G+D +G E + S SE
Sbjct: 898 AKRNALNMFSQITETSTEGDDEEGLEDDSSGSEQS------------------------- 932
Query: 954 KGISLDDSEDVTKLDTPESHVNAG-IRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGT 1012
SL++ E+ K PES NAG RRLVLK +RDS K E T KCN ++ +
Sbjct: 933 ---SLNEFENAIKF--PESQSNAGNRRRLVLKFSLRDSKKSIPSEDTRPKCNTQADIVHS 987
Query: 1013 SSE-AHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQF------DKLEDYLNLSNG 1065
S + E N +S + S A+ + R F ++ ED+L+ S G
Sbjct: 988 PSRPPPKTVEEKETNLISEDPESSSMHAADLEQSQNHNRDDFIHKPRSEETEDHLDTSAG 1047
Query: 1066 YKDGKIRWGGVRARSSKRLKIGEMMPLDANNGS----GIHLDDDKEK 1108
YKD KIRWG + +K E+ P N S G+ L DD +K
Sbjct: 1048 YKDNKIRWG----ENKDDVKNNELAPPGEANKSSSFQGLSLLDDHQK 1090
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42568419|ref|NP_199754.2| WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein [Arabidopsis thaliana] gi|332008427|gb|AED95810.1| WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1449 bits (3752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 864/1502 (57%), Positives = 1040/1502 (69%), Gaps = 131/1502 (8%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MALRK P D+ S MKPL+FS K+ N Q+ D Q ++D+DLREVYFL++H L
Sbjct: 1 MALRKNTPKGDSVSLPMKPLNFSRKLPGNVQIPDPDIVQSVAPNIDLDLREVYFLMLHLL 60
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S+GPC +TY +ELLEH+LLPRRYHAWYSRSGLPSGDENDDG SFPL+Y +L +RY H
Sbjct: 61 SSGPCQKTYALLRHELLEHELLPRRYHAWYSRSGLPSGDENDDGNSFPLNYTELAKRYSH 120
Query: 121 IEKDHLVKLLKQLII--NTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEI 178
++KDHLV+LLKQL+ N +PSR + G+ A VPTLLG GSFSLLS D++ +++
Sbjct: 121 VKKDHLVELLKQLVFVSNRPNPSRGIGDGNKMIGAGVPTLLGTGSFSLLSSDKEIVGSDL 180
Query: 179 DHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKR 238
PP MRWPHM+ADQVRG+ LREIGGGF RHHRAPSIRAACY IAKPS+MVQKMQNIKR
Sbjct: 181 KPPPIGMRWPHMHADQVRGISLREIGGGFARHHRAPSIRAACYVIAKPSSMVQKMQNIKR 240
Query: 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA 298
+RGHRNAVYCAI DRSGRYVITGSDDRLVK+WSM+TAYCLASCRGHEGDITDLAVSSNN
Sbjct: 241 LRGHRNAVYCAILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNI 300
Query: 299 LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
+ASASNDC+IRVWRLPDGLP+SVLRGHT AVTAIAFSPRPGS YQLLSSSDDGTCRIWD
Sbjct: 301 FIASASNDCVIRVWRLPDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWD 360
Query: 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418
AR +QF+PRIY+PRP + G+N PSSS QSHQIFCCAFNA+G+VFVTGSSDTLARV
Sbjct: 361 ARGAQFAPRIYVPRPP-SPDGKNSGPSSSNAQQSHQIFCCAFNASGSVFVTGSSDTLARV 419
Query: 419 ---WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
W+A K NTDD +QPNHE+DVL+GHENDVNYVQFSGCA S+FS+ D SK+++ PKFK
Sbjct: 420 YSVWSANKTNTDDPEQPNHEMDVLAGHENDVNYVQFSGCAAGSKFSVTDYSKDENVPKFK 479
Query: 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535
NSWFCHDNIVTCSRDGSAIIWIPR RRSH K+ RWT+AYHLKVPPPPMPPQPPRGGPRQR
Sbjct: 480 NSWFCHDNIVTCSRDGSAIIWIPRLRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQR 539
Query: 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595
ILPTPRGVNMI WSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHT STYV+DVHPFNP
Sbjct: 540 ILPTPRGVNMIAWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPFNP 599
Query: 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655
RIAMSAGYDGKTIVWDIWEGIPI+IY+IS ++LVDGKFSPDG SIILSDDVGQLYIL+TG
Sbjct: 600 RIAMSAGYDGKTIVWDIWEGIPIQIYDISHYKLVDGKFSPDGTSIILSDDVGQLYILSTG 659
Query: 656 QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 715
QG+SQKDAKYDQFFLGDYRPL+QDTYGNVLDQE+QL P+RRN++DPLCDS MIPY EPYQ
Sbjct: 660 QGDSQKDAKYDQFFLGDYRPLIQDTYGNVLDQESQLQPYRRNMEDPLCDSGMIPYEEPYQ 719
Query: 716 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEP 775
T +Q+RRLGALG EWRPSSLKLAVGPD +LD+ YQ+ PLADLD + +PLPEFIDVM+WEP
Sbjct: 720 TTFQKRRLGALGKEWRPSSLKLAVGPDITLDRDYQMPPLADLD-LAEPLPEFIDVMEWEP 778
Query: 776 ENEVQSDDNDSEYNVAEEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKK 834
E ++ SD+NDSEYNV EEYS+ +E+ L+S++SG+S S+ +S + ++ + LRRSKRKK
Sbjct: 779 EVDILSDENDSEYNVPEEYSSGKEQECLNSSTSGESGSSSGESYEDDDHQNSLRRSKRKK 838
Query: 835 QKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAA 894
K E IMTSSGRRVK+R DE EG A KRTRKS + +K S+RKSS SKS RP+RAA
Sbjct: 839 HKKEAGIMTSSGRRVKKRNFDELEG-APSNKKRTRKSRSGRKESKRKSSKSKSSRPRRAA 897
Query: 895 ARNARSFFSKITGASTDGEDVDGSEGELSESESD-LQDSYIESEESGRSLLNEQRKHSKG 953
ARNA S+FSKITG S D E+ + SE S QDS E +LLN K SKG
Sbjct: 898 ARNALSWFSKITGTSKDAEEEEVSELSDSSESESTTQDSGTGDSELEVALLNGHGKQSKG 957
Query: 954 KGISLDDSED-VTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGT 1012
K I + DS+D + D E+H A RRLVL+ PVR+S+K L E ++ G+
Sbjct: 958 KTILVCDSDDGAQQCDIRETHT-AERRRLVLRFPVRNSDKLTLLE----------NLPGS 1006
Query: 1013 SSEAHQEATEGNGNRVSYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIR 1072
S + T GNG C R QF+ G K++
Sbjct: 1007 SCDV-PSPTLGNG----------------CTEDSRIPGNQFE----------GLDVSKVK 1039
Query: 1073 WGGVRARSSKRLKIGEMMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDI-SCGEEI 1131
WG V+AR++KR++ GE + GS D + KE+ V +G+ SC E
Sbjct: 1040 WGMVKARTTKRIR-GEAISSHELMGS-----DPEGKENNVKEDSNHRGNGVTAPSCLELK 1093
Query: 1132 TNCGD---NTDEVPLKNVKNLSGENNDVYSGDASCKEQQSGFSELNYYDESKCVNTTDED 1188
T+ D +TD V + N G+ G S D+
Sbjct: 1094 TDIDDMAVDTDTVISNGLPN-GGKRYPELDGSPS--------------------RVADDK 1132
Query: 1189 TTPYPNHLQNGTIQPSELKEILTPVSTKLRIRSKRILRDAD-----------VENQNNGC 1237
+ N QN T + +L + L P+ST L+IRSKR+ R D ++ + G
Sbjct: 1133 AS---NSSQNVTHR-HDLIDSLPPISTTLKIRSKRVSRAPDTSLRQEGKSLSIDQETGGS 1188
Query: 1238 DALHGSSLDIKPNSLPEVLESDGTNRTSSDRGADGSQRLNAQI-DSTSEHDPLGSHSHSH 1296
DAL+ D K + L + DG T D LN QI D+ S + +
Sbjct: 1189 DALNDGFEDAKCD-LTLDCQKDGVVGTEISLRNDCVLELNPQICDALSIANDV------- 1240
Query: 1297 DPLGSHSHSHSRKMFNVVYRRSKTNRDRTNSEGDGGGVGE------STLNANNNNFHESA 1350
P+ SHSH ++MF+ VYRR K+ + + N + D E S + + + HE A
Sbjct: 1241 -PV---SHSHPKRMFDFVYRR-KSRKHKNNLDRDAALTKEVSPGSCSQDHGSGSKSHEGA 1295
Query: 1351 TDGSRRTRSMGLKTTTCDPDNVSSNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSK 1410
++G T GL+ + ++ + + NQ EE S+S
Sbjct: 1296 SNGFHGTELNGLEKSEGSLTHIQDKISDSRGNQNS----------------QEELRSASG 1339
Query: 1411 MTVGLRSTRNRRTSYLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYL 1470
T+ LRSTRNR+++Y F ++ PI+ +K Q + SWL LS HEEGSRYIPQ+GDEV YL
Sbjct: 1340 ATLRLRSTRNRKSTYPFSETKPIETKKPQQLIENVSWLTLSIHEEGSRYIPQMGDEVAYL 1399
Query: 1471 RQ 1472
RQ
Sbjct: 1400 RQ 1401
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297795697|ref|XP_002865733.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297311568|gb|EFH41992.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1437 bits (3720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 857/1488 (57%), Positives = 1025/1488 (68%), Gaps = 134/1488 (9%)
Query: 17 MKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFLSTGPCHRTYGQFWNEL 76
MKPL+FS K+ N Q+ D +Q ++D+DLREVYFLI+H LS+GPC +TY +EL
Sbjct: 1 MKPLNFSRKLPGNVQIPDPDIAQVVAPNIDLDLREVYFLILHLLSSGPCQKTYALLRHEL 60
Query: 77 LEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPHIEKDHLVKLLKQLII- 135
LEH+LLPRRYHAWYSRSGL SGDENDDG SFPL+Y +L +RY H++KDHLV+LLKQL+
Sbjct: 61 LEHELLPRRYHAWYSRSGLSSGDENDDGNSFPLNYTELAKRYSHVKKDHLVELLKQLVFV 120
Query: 136 -NTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDHPPAHMRWPHMYADQ 194
N +PSR + G+ A VPTLLG GSFSLLS D++ +++ PP MRWPHM+ADQ
Sbjct: 121 SNRPNPSRGIGDGNKMIGAGVPTLLGTGSFSLLSSDKEIVGSDLKAPPIGMRWPHMHADQ 180
Query: 195 VRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRS 254
VRG+ LREIGGGF RHHRAPSIRAACY IAKPS+MVQKMQNIKR+RGHRNAVYCAI DRS
Sbjct: 181 VRGISLREIGGGFGRHHRAPSIRAACYVIAKPSSMVQKMQNIKRLRGHRNAVYCAILDRS 240
Query: 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314
GRYVITGSDDRLVK+WSM+TAYCLASCRGHEGDITDLAVSSNN +ASASNDC+IRVWRL
Sbjct: 241 GRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNIFIASASNDCVIRVWRL 300
Query: 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374
PDGLP+SVLRGHT AVTAIAFSPRPGS YQLLSSSDDGTCRIWDAR +QF+PRIY+PRP
Sbjct: 301 PDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWDARGAQFAPRIYVPRPP 360
Query: 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV---WNACKPNTDDSDQ 431
+ G+N PSSS QSHQIFCCAFNANG+VFVTGSSDTLARV W+A K NTDD +Q
Sbjct: 361 -SPDGKNSGPSSSNAQQSHQIFCCAFNANGSVFVTGSSDTLARVYSVWSANKTNTDDPEQ 419
Query: 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG 491
PNHE+DVL+GHENDVNYVQFSGCA S+FS+ D SK+++ PKFKNSWFCHDNIVTCSRDG
Sbjct: 420 PNHEMDVLAGHENDVNYVQFSGCAAGSKFSVTDYSKDENVPKFKNSWFCHDNIVTCSRDG 479
Query: 492 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551
SAIIWIPRSRRSH K+ RWT+AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI WSLD
Sbjct: 480 SAIIWIPRSRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIAWSLD 539
Query: 552 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611
NRFVLAAIMDCRICVWNA+DGSLVHSLTGHT STYV+DVHPFNPRIAMSAGYDGKTIVWD
Sbjct: 540 NRFVLAAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPFNPRIAMSAGYDGKTIVWD 599
Query: 612 IWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLG 671
IWEGIPI+IYEIS ++LVDGKFSPDG SIILSDDVGQLYIL+TGQG+SQKDAKYDQFFLG
Sbjct: 600 IWEGIPIQIYEISHYKLVDGKFSPDGTSIILSDDVGQLYILSTGQGDSQKDAKYDQFFLG 659
Query: 672 DYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWR 731
DYRPL+QD YGNVLDQE+QL P+RRN++DPLCDS MIPY EPYQT +Q+RRLGALG EWR
Sbjct: 660 DYRPLIQDIYGNVLDQESQLQPYRRNMEDPLCDSGMIPYEEPYQTTFQKRRLGALGKEWR 719
Query: 732 PSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDDNDSEYNVA 791
PSSLKLAVGPD +LDQ YQ+ PLADLD + +PLPEFIDVM+WEPE ++ SD+NDSEYNV
Sbjct: 720 PSSLKLAVGPDITLDQDYQMPPLADLD-LAEPLPEFIDVMEWEPEVDILSDENDSEYNVP 778
Query: 792 EEYST-EEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVK 850
EEYS+ +E+ L+S++SG+S S+ +S++ ++ + LRRSKRKK K E IMTSSGRRVK
Sbjct: 779 EEYSSGKEQECLNSSTSGESGSSSGESDEDDDHQNSLRRSKRKKDKKEAGIMTSSGRRVK 838
Query: 851 RRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNARSFFSKITGAST 910
+R DE EG A KRTRKS + +K S+RKSS SKS RP+RAAARNA S+FSKITG S
Sbjct: 839 KRNFDELEG-APSNKKRTRKSRSGRKESKRKSSKSKSSRPRRAAARNALSWFSKITGTSK 897
Query: 911 DGEDVDGSEGELSESESD-LQDSYIESEESGRSLLNEQRKHSKGKGISLDDSED-VTKLD 968
D E+ + SE S QDS E +LLN K SKGK I + DS+D + D
Sbjct: 898 DAEEEEVSELSDSSESESTTQDSGTGDSELEVALLNGHGKQSKGKNILVCDSDDGAQQCD 957
Query: 969 TPESHVNAGIRRLVLKLPVRDSNKHELQERTSDKCNQLVSVIGTSSEAHQEATEGNGNRV 1028
E+H RRLVL+ PVR+S+K L E ++ G+SS+ T GNG
Sbjct: 958 IRETHPTER-RRLVLRFPVRNSDKLTLLE----------NLPGSSSDV-PTPTLGNG--- 1002
Query: 1029 SYVGNNCSSVDANCGLMERRGRGQFDKLEDYLNLSNGYKDGKIRWGGVRARSSKRLKIGE 1088
C R QF+ G K++WG V+AR++KR++ GE
Sbjct: 1003 -------------CAEDSRIPGNQFE----------GLDVSKVKWGMVKARTTKRIR-GE 1038
Query: 1089 MMPLDANNGSGIHLDDDKEKESEVNGHVKPEKDGIDI-SCGE---EITNCGDNTDEVPLK 1144
+ GS D + KE+ + +G+ SC E +I +TD V
Sbjct: 1039 AISSHELMGS-----DPEGKENNLKEDANHHGNGVTAPSCLELKTDIDGMAVDTDTVISS 1093
Query: 1145 NVKNLSGENNDVYSGDASCKEQQSGFSELNYYDESKCVNTTDEDTTPYPNHLQNGTIQPS 1204
+ N G E S L D+ + N Q+ T
Sbjct: 1094 GLPN----------GGKRYPELDGSPSRL-----------ADDRAS---NGSQDVTGHRH 1129
Query: 1205 ELKEILTPVSTKLRIRSKRILRDAD-----------VENQNNGCDALHGSSLDIKPNSLP 1253
L + L P+ST LRIRSKR+ R D ++ + G DAL+ D K + L
Sbjct: 1130 NLIDSLPPISTTLRIRSKRVSRAPDTSLRQEGKPLSIDQETGGSDALNDGFEDAKCD-LA 1188
Query: 1254 EVLESDGTNRTSSDRGADGSQRLNAQID---STSEHDPLGSHSHSHDPLGSHSHSHSRKM 1310
+ DG T D LN QI S + P+ SHSH ++M
Sbjct: 1189 LDCQKDGVVGTEISLRNDCVLELNPQISDALSIANDVPV-------------SHSHPKRM 1235
Query: 1311 FNVVYRRSKTNRDRTNSEGDGGGVGE------STLNANNNNFHESATDGSRRTRSMGLKT 1364
F+ VYRR K+ + N + D E S + + HE A++G T+ GL+
Sbjct: 1236 FDFVYRR-KSRKYNNNLDRDAAITKEISPGSCSQDQGSGSKSHEGASNGFHGTQLNGLEK 1294
Query: 1365 TTCDPDNVSSNLRLEQHNQPEDMYSGHNRSTSRCQLPHEEWGSSSKMTVGLRSTRNRRTS 1424
+ ++ + + NQ EE S+S T+ LRSTRNR+++
Sbjct: 1295 SEGSLTHIQDKISDSRGNQNS----------------QEELRSASGATLRLRSTRNRKST 1338
Query: 1425 YLFCDSSPIDRRKTHQSLRKGSWLMLSTHEEGSRYIPQLGDEVVYLRQ 1472
Y F ++ PI+ +K Q + SWL LS HEEGSRYIPQ+GDEV YLRQ
Sbjct: 1339 YPFSETKPIETKKPQQLIENVSWLTLSIHEEGSRYIPQMGDEVAYLRQ 1386
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1491 | ||||||
| TAIR|locus:2158044 | 1677 | AT5G49430 "AT5G49430" [Arabido | 0.788 | 0.700 | 0.579 | 0.0 | |
| TAIR|locus:2061997 | 1520 | AT2G47410 "AT2G47410" [Arabido | 0.592 | 0.581 | 0.672 | 0.0 | |
| UNIPROTKB|Q9NSI6 | 2320 | BRWD1 "Bromodomain and WD repe | 0.191 | 0.122 | 0.316 | 5.5e-61 | |
| UNIPROTKB|E1BSG1 | 2293 | BRWD1 "Uncharacterized protein | 0.176 | 0.114 | 0.305 | 4.7e-60 | |
| UNIPROTKB|F1MTQ0 | 2322 | BRWD1 "Uncharacterized protein | 0.191 | 0.122 | 0.313 | 3.4e-59 | |
| ZFIN|ZDB-GENE-050208-261 | 1805 | phip "pleckstrin homology doma | 0.119 | 0.098 | 0.376 | 6e-58 | |
| RGD|1559445 | 1799 | Brwd3 "bromodomain and WD repe | 0.195 | 0.161 | 0.312 | 4.3e-56 | |
| FB|FBgn0011785 | 2232 | BRWD3 "BRWD3" [Drosophila mela | 0.244 | 0.163 | 0.259 | 8.3e-53 | |
| ZFIN|ZDB-GENE-041111-120 | 2008 | brwd1 "bromodomain and WD repe | 0.174 | 0.129 | 0.315 | 6.9e-48 | |
| DICTYBASE|DDB_G0285837 | 2200 | DDB_G0285837 "BRWD group prote | 0.148 | 0.100 | 0.319 | 5.8e-45 |
| TAIR|locus:2158044 AT5G49430 "AT5G49430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3415 (1207.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 705/1216 (57%), Positives = 837/1216 (68%)
Query: 1 MALRKYIPSADAPSGTMKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFL 60
MALRK P D+ S MKPL+FS K+ N Q+ D Q ++D+DLREVYFL++H L
Sbjct: 1 MALRKNTPKGDSVSLPMKPLNFSRKLPGNVQIPDPDIVQSVAPNIDLDLREVYFLMLHLL 60
Query: 61 STGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPH 120
S+GPC +TY +ELLEH+LLPRRYHAWYSRSGLPSGDENDDG SFPL+Y +L +RY H
Sbjct: 61 SSGPCQKTYALLRHELLEHELLPRRYHAWYSRSGLPSGDENDDGNSFPLNYTELAKRYSH 120
Query: 121 IEKDHLVKLLKQLII--NTSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEI 178
++KDHLV+LLKQL+ N +PSR + G+ A VPTLLG GSFSLLS D++ +++
Sbjct: 121 VKKDHLVELLKQLVFVSNRPNPSRGIGDGNKMIGAGVPTLLGTGSFSLLSSDKEIVGSDL 180
Query: 179 DHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKR 238
PP MRWPHM+ADQVRG+ LREIGGGF RHHRAPSIRAACY IAKPS+MVQKMQNIKR
Sbjct: 181 KPPPIGMRWPHMHADQVRGISLREIGGGFARHHRAPSIRAACYVIAKPSSMVQKMQNIKR 240
Query: 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXX 298
+RGHRNAVYCAI DRSGRYVITGSDDRLVK+WSM+TAYCLASCRGHEGDITD
Sbjct: 241 LRGHRNAVYCAILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNI 300
Query: 299 XXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
DC+IRVWRLPDGLP+SVLRGHT AVTAIAFSPRPGS YQLLSSSDDGTCRIWD
Sbjct: 301 FIASASNDCVIRVWRLPDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWD 360
Query: 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418
AR +QF+PRIY+PRP G+N PSSS QSHQIFCCAFNA+G+VFVTGSSDTLARV
Sbjct: 361 ARGAQFAPRIYVPRPPSP-DGKNSGPSSSNAQQSHQIFCCAFNASGSVFVTGSSDTLARV 419
Query: 419 ---WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
W+A K NTDD +QPNHE+DVL+GHENDVNYVQFSGCA S+FS+ D SK+++ PKFK
Sbjct: 420 YSVWSANKTNTDDPEQPNHEMDVLAGHENDVNYVQFSGCAAGSKFSVTDYSKDENVPKFK 479
Query: 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXX 535
NSWFCHDNIVTCSRDGSAIIWIPR RRSH K+ RWT+AYHLKV
Sbjct: 480 NSWFCHDNIVTCSRDGSAIIWIPRLRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQR 539
Query: 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595
ILPTPRGVNMI WSLDNRFVLAAIMDCRICVWNA+DGSLVHSLTGHT STYV+DVHPFNP
Sbjct: 540 ILPTPRGVNMIAWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPFNP 599
Query: 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655
RIAMSAGYDGKTIVWDIWEGIPI+IY+IS ++LVDGKFSPDG SIILSDDVGQLYIL+TG
Sbjct: 600 RIAMSAGYDGKTIVWDIWEGIPIQIYDISHYKLVDGKFSPDGTSIILSDDVGQLYILSTG 659
Query: 656 QGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQ 715
QG+SQKDAKYDQFFLGDYRPL+QDTYGNVLDQE+QL P+RRN++DPLCDS MIPY EPYQ
Sbjct: 660 QGDSQKDAKYDQFFLGDYRPLIQDTYGNVLDQESQLQPYRRNMEDPLCDSGMIPYEEPYQ 719
Query: 716 TMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEP 775
T +Q+RRLGALG EWRPSSLKLAVGPD +LD+ YQ+ PLADLD + +PLPEFIDVM+WEP
Sbjct: 720 TTFQKRRLGALGKEWRPSSLKLAVGPDITLDRDYQMPPLADLD-LAEPLPEFIDVMEWEP 778
Query: 776 ENEVQSDDNDSEYNVAEEYXXXXXXX-XXXXXXXXXXXXXXDSEDGENPMDGLRRSKRKK 834
E ++ SD+NDSEYNV EEY +S + ++ + LRRSKRKK
Sbjct: 779 EVDILSDENDSEYNVPEEYSSGKEQECLNSSTSGESGSSSGESYEDDDHQNSLRRSKRKK 838
Query: 835 QKAEVEIMTSSGRRVKRRILDESEGNAAFGNKRTXXXXXXXXXXXXXXXXXXXLRPQXXX 894
K E IMTSSGRRVK+R DE EG A KRT RP+
Sbjct: 839 HKKEAGIMTSSGRRVKKRNFDELEG-APSNKKRTRKSRSGRKESKRKSSKSKSSRPRRAA 897
Query: 895 XXXXXSFFSKITGASTXXXXXXXXXXXXXXXXXXXXXXYIESE-ESGRSLLNEQRKHSKG 953
S+FSKITG S + E +LLN K SKG
Sbjct: 898 ARNALSWFSKITGTSKDAEEEEVSELSDSSESESTTQDSGTGDSELEVALLNGHGKQSKG 957
Query: 954 KGISLDDSED-VTKLDTPESHVNAGIRRLVLKLPVRDSNKHELQERT-SDKCNQLVSVIG 1011
K I + DS+D + D E+H A RRLVL+ PVR+S+K L E C+ +G
Sbjct: 958 KTILVCDSDDGAQQCDIRETHT-AERRRLVLRFPVRNSDKLTLLENLPGSSCDVPSPTLG 1016
Query: 1012 TSSEAHQEATEGNGNRVSYVGNNCSSVDANCGLME----RRGRGQFDKLEDYLNLS---- 1063
E + GN+ + G + S V G+++ +R RG+ + +
Sbjct: 1017 NGCT---EDSRIPGNQ--FEGLDVSKV--KWGMVKARTTKRIRGEAISSHELMGSDPEGK 1069
Query: 1064 -NGYK-DGKIRWGGVRARSSKRLKIG-EMMPLDANNGSGIHLDDDKEKESEVNGHVKPEK 1120
N K D R GV A S LK + M +D + L + ++ E++G
Sbjct: 1070 ENNVKEDSNHRGNGVTAPSCLELKTDIDDMAVDTDTVISNGLPNGGKRYPELDGSPSRVA 1129
Query: 1121 DGIDISCGEEITNCGDNTDEVP-----LK-NVKNLSG--ENNDVYSGDASCKEQQSGFSE 1172
D + + +T+ D D +P LK K +S + + G + +Q++G S+
Sbjct: 1130 DDKASNSSQNVTHRHDLIDSLPPISTTLKIRSKRVSRAPDTSLRQEGKSLSIDQETGGSD 1189
Query: 1173 -LNY-YDESKCVNTTD 1186
LN ++++KC T D
Sbjct: 1190 ALNDGFEDAKCDLTLD 1205
|
|
| TAIR|locus:2061997 AT2G47410 "AT2G47410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3132 (1107.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 601/894 (67%), Positives = 686/894 (76%)
Query: 17 MKPLSFSSKVHENAQLAGSDTSQPAELDVDVDLREVYFLIMHFLSTGPCHRTYGQFWNEL 76
M+P + + V N L D S + D+D+DLREVYFLI+HFLS GPC RT+G +E+
Sbjct: 11 MEPSNLAKLVQGNVPLQPHD-SHSSLTDLDMDLREVYFLILHFLSIGPCERTFGHLRDEI 69
Query: 77 LEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPHIEKDHLVKLLKQLIIN 136
LE LLPRRYH+W+SRSG+ SG +DDG+S PLSY+ L+ERYPHIEKDHLVKLLKQLI+N
Sbjct: 70 LEKGLLPRRYHSWWSRSGIYSGRADDDGISLPLSYDNLIERYPHIEKDHLVKLLKQLILN 129
Query: 137 TSSPSRAMIGGDAPNAADVPTLLGRGSFSLLSYDRDKGQNEIDHPPAHMRWPHMYADQVR 196
S PS + G+APNAADVPTLLG G+FSL+ + + H +++RWPHM+ADQVR
Sbjct: 130 PSFPSHMRVEGNAPNAADVPTLLGSGTFSLVDRSNNIESQKARHVASYLRWPHMHADQVR 189
Query: 197 GLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGR 256
GL LREIGGGF +HHRAPSI +AC+AIAKPSTMVQKMQNIK++RGHRNAVYCAIFDRSGR
Sbjct: 190 GLSLREIGGGFRKHHRAPSILSACHAIAKPSTMVQKMQNIKKLRGHRNAVYCAIFDRSGR 249
Query: 257 YVITGSDDRLVKIWSMETAYCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPD 316
YVITGSDDRLVKIWSMETA CLASCRGHEGDITD D +IRVWRLPD
Sbjct: 250 YVITGSDDRLVKIWSMETALCLASCRGHEGDITDLAVSSNNALVASASNDFVIRVWRLPD 309
Query: 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376
G+PISVLRGHT AVTAIAFSPR SVYQLLSSSDDGTCRIWDARYSQ+ PRIY+P PSDA
Sbjct: 310 GMPISVLRGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIWDARYSQWLPRIYVPSPSDA 369
Query: 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436
G S+S QSHQI CCA+NANGT+FVTGSSD+ ARVW+A KPN DD++QP HE+
Sbjct: 370 NTG-----STSNASQSHQILCCAYNANGTIFVTGSSDSNARVWSASKPNLDDAEQPTHEL 424
Query: 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
DVL GHENDVNYVQFSGCAVA + S AD+ KEDS PKFKNSWFCHDNIVTCSRDGSAIIW
Sbjct: 425 DVLRGHENDVNYVQFSGCAVAPKSSTADALKEDSYPKFKNSWFCHDNIVTCSRDGSAIIW 484
Query: 497 IPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFVL 556
PRSR+ H K+ RW + YHLKV LPTPRGVNMI+WSLDNRFVL
Sbjct: 485 TPRSRKFHGKSGRWMKGYHLKVPPPPLPPQPPRGGPRQRFLPTPRGVNMIIWSLDNRFVL 544
Query: 557 AAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616
AAIMDCRICVWNAADGSLVH LTGH+ES+YVLDVHPFNPRIAMSAGYDGKTI+WDIWEGI
Sbjct: 545 AAIMDCRICVWNAADGSLVHCLTGHSESSYVLDVHPFNPRIAMSAGYDGKTIIWDIWEGI 604
Query: 617 PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPL 676
PI++YEI RF+LVDGKFS DG SI+LSDDVGQ+Y LNTGQGESQK+AKYDQFFLGDYRPL
Sbjct: 605 PIKVYEIGRFKLVDGKFSQDGTSIVLSDDVGQIYFLNTGQGESQKNAKYDQFFLGDYRPL 664
Query: 677 VQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLK 736
++DT G+VLDQETQL PHRRNLQD LCDS+MIPYPEP QTM+QQRRLGALG+EWRPSS+K
Sbjct: 665 IRDTNGHVLDQETQLLPHRRNLQDLLCDSSMIPYPEPDQTMFQQRRLGALGVEWRPSSIK 724
Query: 737 LAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQSDDNDSEYNVAEEYXX 796
+VGPDFSL Q Y + PLADLD +I+PLPEFID M WEPE+EV SDDNDSEYN AE
Sbjct: 725 FSVGPDFSLGQDYIMPPLADLDRLIEPLPEFIDAMYWEPEHEVLSDDNDSEYN-AEVSSD 783
Query: 797 XXXXXXXXXXXXXXXXXXXDSEDGENPMDGLRRSKRKKQKAEVEIMTSSGRRVKRRILDE 856
DS D EN + KR+++ +V + TSSGRR KR ILDE
Sbjct: 784 GARASPCSNSSNELECSSEDS-DVENIHESSYHWKRRRKHPKVNVSTSSGRRDKR-ILDE 841
Query: 857 SEGNAAFGNKRTXXXXXXXXXXXXXXXXXXXLRPQXXXXXXXXSFFSKITGAST 910
++ + + G KRT RPQ S SKI+G+S+
Sbjct: 842 NDSSNS-GIKRTKNRRIVVKASKRKHSDVKASRPQRAAAQNARSLLSKISGSSS 894
|
|
| UNIPROTKB|Q9NSI6 BRWD1 "Bromodomain and WD repeat-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 336 (123.3 bits), Expect = 5.5e-61, Sum P(4) = 5.5e-61
Identities = 104/329 (31%), Positives = 158/329 (48%)
Query: 103 DGMSFPLSYNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAP-NAADVPTLLGR 161
+G SY +LV H+ DHL+++ +++ P M+ + P + + V +LLG
Sbjct: 55 EGNEHNRSYEELVLSNKHVAPDHLLQICQRI-----GP---MLDKEIPPSISRVTSLLGA 106
Query: 162 GSFSLLSYDRDKGQNEIDHPPA----HM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSI 216
G SLL +D ++ + A H R P M + L EI HR +
Sbjct: 107 GRQSLLRTAKDC-RHTVWKGSAFAALHRGRPPEMPVNYGSPPNLVEI-------HRGKQL 158
Query: 217 RA-ACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA 275
+ ++ A P TM Q ++ +R+ GH +AVYC FDR+G + TGSDD LVKIWS
Sbjct: 159 TGCSTFSTAFPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNG 218
Query: 276 YCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAF 335
L++ RGH +I+D D IIRVW L P++VL+GHT ++T++ F
Sbjct: 219 RLLSTLRGHSAEISDMAVNYENTMIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQF 278
Query: 336 SPRP-GSVYQLLSSSDDGTCRIW--DARYSQFSPRI--YIPRPSDAVAGRNMAPSSSAGP 390
SP GS ++S+ DGT W D +FSPR + +P V
Sbjct: 279 SPMAKGSQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGV------------- 325
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVW 419
Q+ C +F+ G TGS+D + R++
Sbjct: 326 ---QMLCSSFSVGGMFLATGSTDHVIRMY 351
|
|
| UNIPROTKB|E1BSG1 BRWD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 4.7e-60, Sum P(5) = 4.7e-60
Identities = 91/298 (30%), Positives = 139/298 (46%)
Query: 440 SGHENDVNYVQFSGCAVASRFSLADSSKED-STPKFKNSWFCHDNIVTCSRDGSAIIWIP 498
+G + V + + G R + +S + + +F NS D ++ SRDG+A IW
Sbjct: 344 TGSTDHVIRMYYFGSETPERIAELESHADKVDSIQFSNSG---DRFISGSRDGTARIW-- 398
Query: 499 RSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFVLAA 558
R+ +A + P+ V MI W+ D+ +V+ A
Sbjct: 399 ----------RFEEAEWRSILLDMSDRLPGDMCSDEDKFMRPK-VTMIAWNQDDNYVVTA 447
Query: 559 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618
+ + + VWN++ G L+H L GH + +VL+ HPF+ RI +SAG+DG +WDI +G
Sbjct: 448 VNNHLLKVWNSSTGQLLHDLVGHADEVFVLETHPFDSRIMLSAGHDGNIFIWDITKGTKT 507
Query: 619 RIYEISRFRLVDG---------KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFF 669
+ Y F +++G KFSPDG +D G L I G + + FF
Sbjct: 508 KHY----FNMIEGQGHGAVFDCKFSPDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFF 563
Query: 670 LGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQRRLGA 725
DYRPL++D+ VLD++TQ APH L P L D P+P YQ + R A
Sbjct: 564 HTDYRPLIRDSNNYVLDEQTQQAPH---LMPPPFLVDVDGNPHPTKYQRLVPGRENSA 618
|
|
| UNIPROTKB|F1MTQ0 BRWD1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 3.4e-59, Sum P(5) = 3.4e-59
Identities = 103/329 (31%), Positives = 157/329 (47%)
Query: 103 DGMSFPLSYNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAP-NAADVPTLLGR 161
+G SY +LV H+ DHL+++ +++ P M+ + P + + V +LLG
Sbjct: 55 EGNEHNRSYEELVLSNKHVAPDHLLQICQRI-----GP---MLDKEIPPSISRVTSLLGA 106
Query: 162 GSFSLLSYDRDKGQNEIDHPPA----HM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSI 216
G SLL +D ++ + A H R P M + L EI HR +
Sbjct: 107 GRQSLLRTAKDC-RHTVWKGSAFAALHRGRPPEMPVNYGSPPNLVEI-------HRGKQL 158
Query: 217 RA-ACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA 275
+ ++ A P M Q ++ +R+ GH +AVYC FDR+G + TGSDD LVKIWS
Sbjct: 159 TGCSTFSTAFPGAMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNG 218
Query: 276 YCLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAF 335
L++ RGH +I+D D IIRVW L P++VL+GHT ++T++ F
Sbjct: 219 RLLSTLRGHSAEISDMAVNYENTMIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQF 278
Query: 336 SPRP-GSVYQLLSSSDDGTCRIW--DARYSQFSPRI--YIPRPSDAVAGRNMAPSSSAGP 390
SP GS ++S+ DGT W D +FSPR + +P V
Sbjct: 279 SPMAKGSQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGV------------- 325
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVW 419
Q+ C +F+ G TGS+D + R++
Sbjct: 326 ---QMLCSSFSVGGMFLATGSTDHVIRMY 351
|
|
| ZFIN|ZDB-GENE-050208-261 phip "pleckstrin homology domain interacting protein" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 316 (116.3 bits), Expect = 6.0e-58, Sum P(5) = 6.0e-58
Identities = 75/199 (37%), Positives = 106/199 (53%)
Query: 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE 285
P+ + Q M+ KR+ GH ++VYC FDR+GR + TGSDD LVKIW+ + + LA+ RGH
Sbjct: 166 PTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGHLLATLRGHA 225
Query: 286 GDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 345
+I+D D +IRVW L P++VL GH A++T++ FSP +
Sbjct: 226 AEISDMAVNYENTLLAAGSCDKMIRVWCLQTCAPLAVLEGHAASITSLQFSPLCSGNKRF 285
Query: 346 LSSSD-DGTCRIW--DARYSQFS--PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400
LSS+ DGT W DAR +F P +I RP V Q+ C +F
Sbjct: 286 LSSTGADGTICFWQWDARTLKFGQRPSKFIERPRPGV----------------QMICSSF 329
Query: 401 NANGTVFVTGSSDTLARVW 419
+A G TGS+D + RV+
Sbjct: 330 SAGGMFLATGSTDHIIRVY 348
|
|
| RGD|1559445 Brwd3 "bromodomain and WD repeat domain containing 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 4.3e-56, Sum P(5) = 4.3e-56
Identities = 101/323 (31%), Positives = 149/323 (46%)
Query: 103 DGMSFPLSYNKLVERYPHIEKDHLVKLLKQLIINTSSPSRAMIGGDAPNAAD-VPTLLGR 161
+G S+ LV HI D+L+K+ +++ P ++ + P + V TLLG
Sbjct: 49 EGKEHRRSFEDLVAANAHIPPDYLLKICERI-----GP---LLDKEIPQSVPGVQTLLGV 100
Query: 162 GSFSLLSYDRD-KGQ--NEIDHPPAHM-RWPHMYADQVRGLGLREIGGGFTRHHRAPSIR 217
G SLL +D K N H R P + + V+ + I R S R
Sbjct: 101 GRQSLLRDAKDCKNTLWNGSAFAALHRGRPPELPVNYVKPPNVVNIXS--XRQXTGCS-R 157
Query: 218 AACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC 277
+ PS+ Q ++ KR+ GH ++VYC FDRSGR + TGSDD LVKIW+ +
Sbjct: 158 ---FXHXFPSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRL 214
Query: 278 LASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337
LA+ RGH +I+D D ++RVW L P++VL+GH+A++T+I F P
Sbjct: 215 LATLRGHSAEISDMAVNYENTLIAAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCP 274
Query: 338 RP-GSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396
G+ L S+ DGT W R RP S G Q I
Sbjct: 275 STKGTTRYLTSTGADGTICFWQWHVKTMKFR---DRPV------KFTERSRPGVQ---IS 322
Query: 397 CCAFNANGTVFVTGSSDTLARVW 419
C +F++ G TGS+D + R++
Sbjct: 323 CSSFSSGGMFITTGSTDHVIRIY 345
|
|
| FB|FBgn0011785 BRWD3 "BRWD3" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 309 (113.8 bits), Expect = 8.3e-53, Sum P(5) = 8.3e-53
Identities = 112/432 (25%), Positives = 189/432 (43%)
Query: 110 SYNKLVERYPHIEKDHLVKLLKQL--IINTSSPSRAMIGGDAPNAADVPTLLGRGSFSLL 167
++ +L +Y HI +HL+++ +L +++ P P+ + +LLG G +LL
Sbjct: 60 TFEELERKYKHIGANHLLEICSRLGPLVDRELP---------PSVPGINSLLGTGRQNLL 110
Query: 168 SYD---------RD--KGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSI 216
RD N + P + + P D+V L RE GG R
Sbjct: 111 RTKETVYCHRSLRDYCTRLNGVSLPDSVLTKPTHNLDRV--LTGREHGGEVRRK------ 162
Query: 217 RAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY 276
+ P+ + ++ + ++R GH ++VYC +FDR+GRY+ITG+DD L+KIWS
Sbjct: 163 ------LLVPTDLYRRTKLLRRTVGHLSSVYCVLFDRTGRYIITGADDLLIKIWSAADGR 216
Query: 277 CLASCRGHEGDITDXXXXXXXXXXXXXXXDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS 336
LA+ RG +ITD D I+RVW + PI+VL HT +T++ F
Sbjct: 217 LLATLRGASSEITDIAINLDNTMLAAGSLDHILRVWDMQTTSPIAVLSAHTGMITSVNFC 276
Query: 337 PRPGS-VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395
P P S + L+++S DG+ W + + P+P+ + P + Q+
Sbjct: 277 PSPRSDLKYLVTTSTDGSIAFWQYSTPRGQKITFAPKPTQY--HEKLRPGQA------QM 328
Query: 396 FCCAFNANGTVFVTGSSDTLARVWNACK--PN--------TD--DSDQPNHE-IDVLSGH 442
C F+ G GS+D RV+ + P TD DS Q +H + +SG
Sbjct: 329 MCTTFSPGGIFLAAGSADHHVRVYMMGEDGPKRILETEAYTDAVDSVQWSHRGLRFISGS 388
Query: 443 ENDVNYV------QFSGCAVASRFSLADSSKEDSTPKFKNS---WFCHDN-IVTCSRDGS 492
++ ++ Q+ + LA + + + K + W D ++T D +
Sbjct: 389 KDGTAHIWTFESQQWKSSKLCMTERLASCPEPEEGKRLKVTMVAWDASDRYVITAVNDFT 448
Query: 493 AIIWIPRSRRSH 504
IW +S + H
Sbjct: 449 IKIWDSKSAKLH 460
|
|
| ZFIN|ZDB-GENE-041111-120 brwd1 "bromodomain and WD repeat domain containing 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 332 (121.9 bits), Expect = 6.9e-48, Sum P(4) = 6.9e-48
Identities = 93/295 (31%), Positives = 138/295 (46%)
Query: 440 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH--DNIVTCSRDGSAIIWI 497
+G +DV + + G + + DS T K + FCH + V+ SRDG+A IW
Sbjct: 166 TGSTDDVIRIYYLGSGSPEKLAELDSH----TDKVDSIQFCHSGERFVSGSRDGTARIW- 220
Query: 498 PRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPRGVNMIVWSLDNRFVLA 557
R + H +W L + P+ V M+ W + V+
Sbjct: 221 -RLHQRH----QWKSVL-LDMSATLPGSAPLTDDENFF---KPK-VTMVSWDRHDNTVIT 270
Query: 558 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 617
A+ + + VWN+ G L+H L GH +VL+ HP++PRI +SAG+DG VWD+ +G
Sbjct: 271 AVNNHLLKVWNSYTGQLLHVLKGHEAEVFVLEPHPYDPRIMLSAGHDGNVFVWDLIKGTK 330
Query: 618 IRIYEISRFRLVDG---------KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQF 668
Y F +++G KF+PDG ++D G L I G + + F
Sbjct: 331 TMHY----FNMIEGQGHGAVFDCKFTPDGHRFAMTDSHGHLVIFGFGSSKPYEKLPDQVF 386
Query: 669 FLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP--LCDSAMIPYPEPYQTMYQQR 721
F DYRPL++DT G VLD++TQ APH L P L D P+P +Q + R
Sbjct: 387 FHTDYRPLIRDTNGFVLDEQTQQAPH---LMPPPFLVDVDGNPHPPRFQRLVPGR 438
|
|
| DICTYBASE|DDB_G0285837 DDB_G0285837 "BRWD group protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 5.8e-45, Sum P(5) = 5.8e-45
Identities = 77/241 (31%), Positives = 118/241 (48%)
Query: 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVXXXXXXXXXXXXXXXXXILPTPR 541
D IV+ S DG+ IIW H +W H+ + +
Sbjct: 606 DAIVSGSYDGTVIIW------RHSGGPKWD---HVIFNIKNTQRPNQANSHPKKVARSKA 656
Query: 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601
++WS D+RF++ + I VWN+ DGS + HT YV HPF+ R+ MS+
Sbjct: 657 TFKNVIWSHDDRFIITTDYNM-IRVWNSLDGSFHLEMAEHTSEVYVTSCHPFDSRLIMSS 715
Query: 602 GYDGKTIVWDIWEGIPIRIYEISR--FR--LVDGKFSPDGASIILSDDVGQLYILNTGQG 657
GYD + I+W I G I+ + + F+ ++DG FSPDG I+++ G+ ++ G G
Sbjct: 716 GYDSQVILWSIETGEIIKKFVLQEPGFQCQILDGCFSPDGQKFIVTNSTGKWFMFELGLG 775
Query: 658 ESQKDAKY----DQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEP 713
+ K +Q+FL DY PL++D GNVLD+ TQ PH + L + +PYP+
Sbjct: 776 SDINNLKKLVPNEQYFLTDYHPLIRDANGNVLDELTQTPPHLMP-RAMLVNYQGLPYPDH 834
Query: 714 Y 714
Y
Sbjct: 835 Y 835
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1491 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-51 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-40 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-38 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-35 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-35 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-25 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-22 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-21 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-10 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 8e-04 | |
| pfam05764 | 238 | pfam05764, YL1, YL1 nuclear protein | 0.001 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 4e-51
Identities = 97/379 (25%), Positives = 152/379 (40%), Gaps = 92/379 (24%)
Query: 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVS 294
+ ++GH V C F G+ + TGS D +K+W +ET L + +GH G + D+A S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 295 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354
++ +AS S+D IR+W L G + L GHT+ V+++AFSP G + L SSS D T
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD-GRI--LSSSSRDKTI 117
Query: 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAFNANGTVFVTGSS 412
++WD + + + H + AF+ +GT + S
Sbjct: 118 KVWDVETGKCLTTL----------------------RGHTDWVNSVAFSPDGTFVASSSQ 155
Query: 413 DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472
D ++W+ + + L+GH +VN V FS D K
Sbjct: 156 DGTIKLWDL---------RTGKCVATLTGHTGEVNSVAFSP----------DGEK----- 191
Query: 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532
+++ S DG+ +W + + T H
Sbjct: 192 -----------LLSSSSDGTIKLWDLSTGKCLG-----TLRGHEN--------------- 220
Query: 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592
GVN + +S D + + D I VW+ G V +L+GHT S L P
Sbjct: 221 ---------GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP 271
Query: 593 FNPRIAMSAGYDGKTIVWD 611
R+A S DG +WD
Sbjct: 272 DGKRLA-SGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 6e-40
Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 38/233 (16%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
++ + ++ + GH + V F GR + + S D+ +K+W +ET CL + RGH +
Sbjct: 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN 139
Query: 290 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349
+A S + VAS+S D I++W L G ++ L GHT V ++AFSP +LLSSS
Sbjct: 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG---EKLLSSS 196
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAFNANGTVF 407
DGT ++WD + H+ + AF+ +G +
Sbjct: 197 SDGTIKLWDLS----------------------TGKCLGTLRGHENGVNSVAFSPDGYLL 234
Query: 408 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVAS 458
+GS D RVW+ + LSGH N V + +S G +AS
Sbjct: 235 ASGSEDGTIRVWDLRTGE---------CVQTLSGHTNSVTSLAWSPDGKRLAS 278
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 2e-38
Identities = 80/372 (21%), Positives = 128/372 (34%), Gaps = 93/372 (25%)
Query: 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS 336
+ +GH G +T +A S + L+A+ S D I+VW L G + L+GHT V +A S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 337 PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ-- 394
L S S D T R+WD + G H
Sbjct: 61 A---DGTYLASGSSDKTIRLWDLE---------TGECVRTLTG-------------HTSY 95
Query: 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454
+ AF+ +G + + S D +VW+ + L GH + VN V FS
Sbjct: 96 VSSVAFSPDGRILSSSSRDKTIKVWDVETGK---------CLTTLRGHTDWVNSVAFSPD 146
Query: 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514
F + + S+DG+ +W R+
Sbjct: 147 ---GTF-----------------------VASSSQDGTIKLWDLRT-------------- 166
Query: 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 574
G + VN + +S D +L++ D I +W+ + G
Sbjct: 167 ---------------GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
Query: 575 VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 634
+ +L GH + P + + S DG VWD+ G ++ + +S
Sbjct: 212 LGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS 270
Query: 635 PDGASII-LSDD 645
PDG + S D
Sbjct: 271 PDGKRLASGSAD 282
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 1e-35
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 27/189 (14%)
Query: 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAV 293
+ + +RGH + V F G +V + S D +K+W + T C+A+ GH G++ +A
Sbjct: 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF 185
Query: 294 SSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353
S + + S+S+D I++W L G + LRGH V ++AFSP Y L S S+DGT
Sbjct: 186 SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP---DGYLLASGSEDGT 242
Query: 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAFNANGTVFVTGS 411
R+WD R + + H + A++ +G +GS
Sbjct: 243 IRVWDLRTGECVQTL----------------------SGHTNSVTSLAWSPDGKRLASGS 280
Query: 412 SDTLARVWN 420
+D R+W+
Sbjct: 281 ADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 3e-35
Identities = 70/287 (24%), Positives = 121/287 (42%), Gaps = 56/287 (19%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
++ + ++ ++GH V G Y+ +GS D+ +++W +ET C+ + GH ++
Sbjct: 38 LETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97
Query: 290 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349
+A S + +++S+S D I+VW + G ++ LRGHT V ++AFSP V SSS
Sbjct: 98 SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA---SSS 154
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409
DGT ++WD R + + G ++ AF+ +G ++
Sbjct: 155 QDGTIKLWDLRTGKCVATLT-------------------GHTG-EVNSVAFSPDGEKLLS 194
Query: 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS-------GCAVASRFSL 462
SSD ++W+ +T + L GHEN VN V FS + +
Sbjct: 195 SSSDGTIKLWD---LSTGK------CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245
Query: 463 ADSSKEDSTPKFKNSWFCHDN-------------IVTCSRDGSAIIW 496
D + H N + + S DG+ IW
Sbjct: 246 WDLRTGECVQTLS----GHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 7e-25
Identities = 70/340 (20%), Positives = 114/340 (33%), Gaps = 88/340 (25%)
Query: 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378
L+GHT VT +AFSP L + S DGT ++WD + +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKL---LATGSGDGTIKVWDLETGELLRTLKGH------- 50
Query: 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 438
+ + A +A+GT +GSSD R+W+ + +
Sbjct: 51 -------------TGPVRDVAASADGTYLASGSSDKTIRLWDL---------ETGECVRT 88
Query: 439 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIP 498
L+GH + V+ V FS + + SRD + +W
Sbjct: 89 LTGHTSYVSSVAFSP---------------------DGRI-----LSSSSRDKTIKVW-- 120
Query: 499 RSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558
G + VN + +S D FV ++
Sbjct: 121 ---------------------------DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153
Query: 559 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618
D I +W+ G V +LTGHT + P ++ S+ DG +WD+ G +
Sbjct: 154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLL-SSSSDGTIKLWDLSTGKCL 212
Query: 619 RIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 658
+ FSPDG + + G + + + GE
Sbjct: 213 GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (253), Expect = 2e-22
Identities = 91/413 (22%), Positives = 152/413 (36%), Gaps = 88/413 (21%)
Query: 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC-RGHEGDITDLAVSSNNALVAS 302
+ + + D + + + S D VK+W + T L GH +T LA S + L+AS
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLAS 172
Query: 303 ASN-DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361
S+ D I++W L G P+S L GHT V+++AFSP + S S DGT R+WD
Sbjct: 173 GSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD--GGLLIASGSSDGTIRLWDLST 230
Query: 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421
+ V +F+ +G++ +GSSD R+W
Sbjct: 231 GKLLRSTLSGHSDSVV--------------------SSFSPDGSLLASGSSDGTIRLW-- 268
Query: 422 CKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481
D + + LSGH + V V FS
Sbjct: 269 ------DLRSSSSLLRTLSGHSSSVLSVAFSP--------------------------DG 296
Query: 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 541
+ + S DG+ +W + + T H
Sbjct: 297 KLLASGSSDGTVRLW---DLETGKLLSSLTLKGHEGP----------------------- 330
Query: 542 GVNMIVWSLDNRFVLAAIM-DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 600
V+ + +S D +++ D I +W+ G + +L GH+ + + P ++ S
Sbjct: 331 -VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVS-S 387
Query: 601 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653
DG +WD+ G +R + R+ FSPDG S+ + + +
Sbjct: 388 GSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.2 bits (243), Expect = 5e-21
Identities = 93/382 (24%), Positives = 143/382 (37%), Gaps = 89/382 (23%)
Query: 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSD-DRLVKIWSMETAYCLASCRGHEGDITDLA 292
+ I+ + GH +V F G+ + +GS D +K+W + T L++ GH ++ LA
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205
Query: 293 VSSNN-ALVASASNDCIIRVWRLPDGLPI-SVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350
S + L+AS S+D IR+W L G + S L GH+ +V +FSP L S S
Sbjct: 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSL---LASGSS 261
Query: 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410
DGT R+WD R S R S + AF+ +G + +G
Sbjct: 262 DGTIRLWDLRSSSSLLRTLS-------------------GHSSSVLSVAFSPDGKLLASG 302
Query: 411 SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470
SSD R+W+ L GHE V+ + FS
Sbjct: 303 SSDGTVRLWDLETGKL-------LSSLTLKGHEGPVSSLSFSPD---------------- 339
Query: 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530
+ S DG+ +W R+ +
Sbjct: 340 ---------GSLLVSGGSDDGTIRLWDLRTGKP--------------------------- 363
Query: 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 590
+ L V + +S D R V + D + +W+ + GSL+ +L GHT LD
Sbjct: 364 ---LKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420
Query: 591 HPFNPRIAMSAGYDGKTIVWDI 612
P +A S D +WD+
Sbjct: 421 SPDGKSLA-SGSSDNTIRLWDL 441
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 6e-20
Identities = 52/270 (19%), Positives = 90/270 (33%), Gaps = 65/270 (24%)
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451
+ + C AF+ +G + TGS D +VW+ + + L GH V V
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDL---------ETGELLRTLKGHTGPVRDVAA 59
Query: 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511
S AD + + + S D + +W + T
Sbjct: 60 S----------ADGTY----------------LASGSSDKTIRLWDLETGECV-----RT 88
Query: 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571
H V+ + +S D R + ++ D I VW+
Sbjct: 89 LTGHTS------------------------YVSSVAFSPDGRILSSSSRDKTIKVWDVET 124
Query: 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG 631
G + +L GHT+ + P +A S+ DG +WD+ G + +
Sbjct: 125 GKCLTTLRGHTDWVNSVAFSPDGTFVA-SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183
Query: 632 KFSPDGASIILSDDVGQLYILNTGQGESQK 661
FSPDG ++ S G + + + G+
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.0 bits (206), Expect = 2e-16
Identities = 57/280 (20%), Positives = 110/280 (39%), Gaps = 30/280 (10%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVI-TGSDDRLVKIWSMETAYCLASCRGHEGDI 288
++ + + + GH + V F G +I +GS D +++W + T L S D
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244
Query: 289 TDLAVSSNNALVASASNDCIIRVWRLP-DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347
+ S + +L+AS S+D IR+W L + L GH+++V ++AFSP L S
Sbjct: 245 VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK---LLAS 301
Query: 348 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 407
S DGT R+WD + + + V +F+ +G++
Sbjct: 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPV------------------SSLSFSPDGSLL 343
Query: 408 VTG-SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466
V+G S D R+W+ + + + + +S + S + L+ S
Sbjct: 344 VSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGS 403
Query: 467 KEDSTPKFKNSWFC------HDNIVTCSRDGSAIIWIPRS 500
+ + ++ + S D + +W ++
Sbjct: 404 LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.6 bits (166), Expect = 1e-11
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 234 QNIKRVRGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLA 292
+ ++GH V F G V GSDD +++W + T L + GH ++ ++
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVS 377
Query: 293 VSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 352
S + +V+S S D +R+W L G + L GHT+ VT++ FSP S L S S D
Sbjct: 378 FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS---LASGSSDN 434
Query: 353 TCRIWDARYSQFS 365
T R+WD + S S
Sbjct: 435 TIRLWDLKTSLKS 447
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.0 bits (154), Expect = 3e-10
Identities = 57/317 (17%), Positives = 99/317 (31%), Gaps = 59/317 (18%)
Query: 344 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403
+ + S S + + SD++ S I AF+ +
Sbjct: 17 KKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPD 76
Query: 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLA 463
G + ++GSSD ++W D D I L G + S LA
Sbjct: 77 GELLLSGSSDGTIKLW--------DLDNGEKLIKSLEGLHDS------------SVSKLA 116
Query: 464 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523
SS + ++ +S DG+ +W +
Sbjct: 117 LSSPDGNSILLASSSL----------DGTVKLWDLST----------------------- 143
Query: 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAADGSLVHSLTGHT 582
G + + V + +S D + + +D I +W+ G + +L GHT
Sbjct: 144 -----PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT 198
Query: 583 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIIL 642
+ L P + S DG +WD+ G +R V FSPDG+ +
Sbjct: 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLAS 258
Query: 643 SDDVGQLYILNTGQGES 659
G + + + S
Sbjct: 259 GSSDGTIRLWDLRSSSS 275
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-08
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
G + L+GHT VT++AFSP L S SDDGT R+WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSP---DGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-07
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 316 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
G + L+GHT VT++AFSP L S SDDGT ++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSP---DGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 8e-07
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312
L + +GH G +T +A S + +AS S+D I++W
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-06
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312
L + +GH G +T +A S + L+AS S+D +RVW
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 271
+ +K ++GH V F G+Y+ +GSDD +K+W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-06
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 271
+ ++ ++GH V F G + +GSDD V++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (115), Expect = 2e-05
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
++ + +K + GH + V F GR V +GS D V++W + T L + GH +T
Sbjct: 358 LRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVT 416
Query: 290 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323
L S + +AS S+D IR+W L L
Sbjct: 417 SLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 5e-04
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 571 DGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611
G L+ +L GHT + P +A S DG +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLA-SGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 8e-04
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611
G L+ +L GHT + P +A S DG VWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLA-SGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 11/130 (8%)
Query: 780 QSDDNDSEYNVAEEYSTEEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEV 839
+ +++D E+ + EE EE S S D ++D E+GE + R K+KK+
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEP-ESDDEEEGEKELQREERLKKKKRVKTK 93
Query: 840 EIMTSSGRRVKRRILDESEGNAAFG----------NKRTRKSGNRQKSSRRKSSTSKSLR 889
+ ++ K+ AA T R+KSSR + +K
Sbjct: 94 AYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEAT 153
Query: 890 PQRAAARNAR 899
+R R R
Sbjct: 154 HERLKEREIR 163
|
The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ + AF+ +G + +GS D RVW+
Sbjct: 11 TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 282 RGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDG--------LPISVLRGHTAAVTA 332
+GH I DL + + ++AS S D IRVW +P P +L+GH ++
Sbjct: 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130
Query: 333 IAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA---GRNMAPSSSAG 389
I ++P + Y + SS D IWD + + +I +P+ ++ N+ + G
Sbjct: 131 IDWNPM--NYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVG 188
Query: 390 PQSHQI 395
H I
Sbjct: 189 KHMHII 194
|
Length = 568 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1491 | |||
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.98 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.98 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.95 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.94 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.93 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.93 | |
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.92 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.92 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.92 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.92 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.92 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.92 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.91 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.91 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.9 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.9 | |
| PTZ00421 | 493 | coronin; Provisional | 99.89 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.89 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.89 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.89 | |
| PTZ00420 | 568 | coronin; Provisional | 99.88 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.88 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.87 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.87 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.87 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.87 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.86 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.86 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.86 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.86 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.86 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.86 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.85 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.85 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.85 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.84 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.84 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.84 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.83 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.82 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.82 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.81 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.8 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.8 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.8 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.79 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.79 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.77 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.77 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.77 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.77 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.76 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.75 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.75 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.75 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.74 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.73 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.73 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.72 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.7 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.7 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.7 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.7 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.69 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.68 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.68 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.66 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.66 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.64 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.62 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.61 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.6 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.6 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.58 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.58 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.57 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.57 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.56 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.54 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.53 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.52 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.52 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.51 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.5 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.5 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.49 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.48 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.48 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.45 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.44 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.44 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.43 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.41 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.39 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.39 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.38 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.38 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.37 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.35 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.34 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.34 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.33 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.33 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.31 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.28 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.27 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.27 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.26 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.25 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.24 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.23 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.23 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.22 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.19 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.19 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.18 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.17 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.16 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.16 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.16 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.14 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.14 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.13 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.13 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.11 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.07 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.07 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.07 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.06 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.04 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.03 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.01 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.01 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.99 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.98 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.97 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.96 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.94 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.94 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.94 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.92 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.91 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.9 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.88 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.87 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.86 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.84 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.82 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.8 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.78 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.76 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.75 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.75 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.73 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.68 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.65 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.64 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.57 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.55 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.53 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.52 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.42 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.38 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.36 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.36 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.35 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.34 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.33 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.33 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.32 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.31 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.28 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.28 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.26 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.25 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.22 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.21 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.2 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.16 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.16 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.15 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.11 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.09 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.06 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.05 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.04 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.99 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.98 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.96 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.94 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.89 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.86 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.84 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.84 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.83 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.79 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.79 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.79 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.76 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.72 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.7 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.67 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.66 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.58 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.58 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.56 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.55 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.54 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.54 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.46 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.45 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.43 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.36 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.3 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.3 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.28 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.17 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.1 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.06 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.05 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.03 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.95 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.88 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.86 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.83 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.82 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.77 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.76 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.69 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.67 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.6 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.54 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.53 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.42 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.4 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.39 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.38 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.34 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.19 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.17 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.05 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.86 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.78 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 95.62 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.5 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.4 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.35 | |
| PRK10115 | 686 | protease 2; Provisional | 95.33 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.29 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.26 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.25 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.23 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.2 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 95.2 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.07 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.65 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.46 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 94.38 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.35 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 93.91 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.86 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 93.81 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.71 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.66 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 93.55 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.52 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.49 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 93.4 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 93.37 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 93.25 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 93.13 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.05 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 92.89 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 92.88 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 92.86 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.63 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 92.46 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 92.4 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 92.29 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 91.74 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 91.5 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 90.35 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 90.26 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 89.9 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 89.39 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 89.34 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 89.33 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 89.04 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 89.01 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 88.09 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 88.01 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 87.84 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 87.63 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 87.61 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 87.14 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 87.12 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 87.1 | |
| PRK10115 | 686 | protease 2; Provisional | 86.57 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 86.47 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 86.3 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 86.11 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 85.42 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 84.69 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 84.65 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 83.9 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 83.53 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 83.32 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 81.95 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 81.19 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 80.49 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 80.24 |
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-96 Score=867.80 Aligned_cols=618 Identities=63% Similarity=0.972 Sum_probs=521.9
Q ss_pred cchhHHHHHHHHHhccCcchhHHHHHHHHHHhhcCChhhHHHHHhhcCCCCCCCCCCCccchhcHHHHHHHCCCCChHHH
Q 000454 47 VDLREVYFLIMHFLSTGPCHRTYGQFWNELLEHQLLPRRYHAWYSRSGLPSGDENDDGMSFPLSYNKLVERYPHIEKDHL 126 (1491)
Q Consensus 47 ~~~~e~~flI~hfL~~gp~~~aa~~L~~el~~~~~Lp~r~~~Wle~l~l~~~~~~~~G~~~~~~~~~L~~~~~~i~~~~L 126 (1491)
+|++|+||||.|||+.|||.+++++|+.|++++++||.|+++|. +..+...++.|+..|+||.++||
T Consensus 13 l~lsevyflil~~lS~gPcert~~vl~~elee~~ll~pr~~~W~-------------sn~~~dd~eslvls~~hI~kdhl 79 (1113)
T KOG0644|consen 13 LDLSEVYFLILHYLSAGPCERTAQVLRQELEEYSLLPPRYHDWE-------------SNSGNDDGESLVLSYKHIAKDHL 79 (1113)
T ss_pred cchhhHHHHHHhhcccCchhhcchhhhhhhhhhhccCccccccc-------------cCCCCcccceeeccccccchHHH
Confidence 68999999999999999999999999999999999999999994 44555566777777999999999
Q ss_pred HHHHHHHHHccCCCcccccCCCCCC---CCcccccccCCcccccccccccCCCccCCCCCCCCCCCCCcccccccccccc
Q 000454 127 VKLLKQLIINTSSPSRAMIGGDAPN---AADVPTLLGRGSFSLLSYDRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREI 203 (1491)
Q Consensus 127 l~~l~r~i~~~~~~i~~~~~~~~P~---~~~vsaLlg~g~~SLl~~~~~~~~~~~~~p~~~~r~p~~h~d~V~~l~~r~~ 203 (1491)
|++|+||+.-. ..+++|. ++.|++|||+|+|||++....+... +.++..++||+||++||+++.++..
T Consensus 80 l~i~kqlv~~~-------d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~--~~~~s~~~~~h~~~~~~~~~sl~s~ 150 (1113)
T KOG0644|consen 80 LQILKQLVPML-------DKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHT--VWKGSAFRWPHMHADQVRGVSLRSI 150 (1113)
T ss_pred HHHHHHhccCc-------CCCCCcceeeeecccchhcchhHHHHhhhhhcccc--cccccccccccccCcccccceeccC
Confidence 99999996322 2345776 8899999999999999998877644 5566899999999999999999999
Q ss_pred cCccccccCCCcceeeeccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec
Q 000454 204 GGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG 283 (1491)
Q Consensus 204 Gg~~~~~~~~~sl~s~~~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~g 283 (1491)
|++|..|++++++.++|+.+++|..++++++.++.|.||.++|+|++|+..|.+|+||++|..|+||.++++.++..++|
T Consensus 151 ~~~~~~h~~a~~i~~at~~~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG 230 (1113)
T KOG0644|consen 151 GGGFEIHHRAPSIGCATFSIAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG 230 (1113)
T ss_pred CcchhhhhcCcccccceeeecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCC
Q 000454 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~ 363 (1491)
|.+.|+.++.+.++.++|+++.|..|+||.+.++.++.++.+|++.|++|+|+|- .+.+.||++++||.+
T Consensus 231 hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~-------~sss~dgt~~~wd~r--- 300 (1113)
T KOG0644|consen 231 HSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-------ASSSDDGTCRIWDAR--- 300 (1113)
T ss_pred CccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc-------ccCCCCCceEecccc---
Confidence 9999999999999999999999999999999999999999999999999999995 378899999999998
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCC
Q 000454 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1491)
Q Consensus 364 ~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1491)
+...++.|.+.... ....+.++.|-..+.-+++|+.|+....|.+.. +..+.
T Consensus 301 ~~~~~y~prp~~~~-------------~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~---------------l~~~~ 352 (1113)
T KOG0644|consen 301 LEPRIYVPRPLKFT-------------EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ---------------LAWRS 352 (1113)
T ss_pred ccccccCCCCCCcc-------------cccceeeeeccccccccccccCCcccccchhhH---------------hhhhc
Confidence 34444444433222 223455556666666666776666665554421 01111
Q ss_pred CCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCC
Q 000454 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1491)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~ 523 (1491)
..+ .+++.+.|
T Consensus 353 ~~l------------------------------------if~t~ssd--------------------------------- 363 (1113)
T KOG0644|consen 353 NLL------------------------------------IFVTRSSD--------------------------------- 363 (1113)
T ss_pred cce------------------------------------EEEecccc---------------------------------
Confidence 000 11111110
Q ss_pred CCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC
Q 000454 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 603 (1491)
Q Consensus 524 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~ 603 (1491)
-..+.+++-.+..+++|++.+|.+++.+.+|...++.+.+||+++++..++++
T Consensus 364 ---------------------------~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~ 416 (1113)
T KOG0644|consen 364 ---------------------------LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY 416 (1113)
T ss_pred ---------------------------ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccC
Confidence 01355666678889999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccceeeecCCCcceEEccCCC
Q 000454 604 DGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGN 683 (1491)
Q Consensus 604 DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~fs~D~r~La~d~~G~ 683 (1491)
||.+.|||+..|.+++.+..+++.+.+.+||+||+.++..+..|+++|+.++.++.+...++.+||..||++|+.+.+|+
T Consensus 417 dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~dqffl~dyrplirdTn~~ 496 (1113)
T KOG0644|consen 417 DGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKYDQFFLGDYRPLIRDTNGY 496 (1113)
T ss_pred CCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccccccccceEeecCcccccccccch
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCccccccC
Q 000454 684 VLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDP 763 (1491)
Q Consensus 684 vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~~~liep 763 (1491)
|+|++||+.|| .++++++|+..++|||++||+++|+++++++ ++++.|
T Consensus 497 vldqeTq~~ph-~~~p~~l~ds~~iphpe~yqtl~q~rr~sa~-------------------------------dh~mp~ 544 (1113)
T KOG0644|consen 497 VLDQETQLAPH-RNPPDFLCDSDMIPHPEPYQTLFQGRRLSAL-------------------------------DHLMPP 544 (1113)
T ss_pred hhhhHhhhccc-cCCCCceeccCCCcCCchhhhcccccccchh-------------------------------hhcCCc
Confidence 99999999999 5669999999999999999999988775554 334444
Q ss_pred CcccccccccccCCcCCCCCCCccccccccccccccCCCCCCCCCCCCCCcCCcCCCCCCCCcchhhHhhhhhhhhheec
Q 000454 764 LPEFIDVMDWEPENEVQSDDNDSEYNVAEEYSTEEKGSLSSTSSGDSECSAEDSEDGENPMDGLRRSKRKKQKAEVEIMT 843 (1491)
Q Consensus 764 lp~~i~~~~W~P~~ev~s~d~~~~~~~~e~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1491)
+ ++++.|+|+|+.+|++++++++|+-+.+++
T Consensus 545 l-~fia~~~~E~e~~Vls~~nds~~~~~~es~------------------------------------------------ 575 (1113)
T KOG0644|consen 545 L-EFIATMDWEPEEQVLSDQNDSEYNRSPESL------------------------------------------------ 575 (1113)
T ss_pred c-cchhhhccccchhhhhhcccccccCCcccc------------------------------------------------
Confidence 4 889999999999999999998887644410
Q ss_pred cccccccccccccccCCcccCCCcccccCccccccccccccccccchHHHHHHHHhhhhhhhcCcCCCCC
Q 000454 844 SSGRRVKRRILDESEGNAAFGNKRTRKSGNRQKSSRRKSSTSKSLRPQRAAARNARSFFSKITGASTDGE 913 (1491)
Q Consensus 844 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 913 (1491)
++.++- ..+..|.++.|-+.|.+|+++.++|+++|+|+++|||+..|+++++++-+.+
T Consensus 576 -----------seldg~-isq~krt~n~r~g~k~s~~~hg~s~ss~~~R~~~Rn~~~~isk~sg~~~~~~ 633 (1113)
T KOG0644|consen 576 -----------SELDGM-ISQLKRTQNQRMGAKQSKRKHGLSKSSRPPRAAARNASSDISKISGISLDRK 633 (1113)
T ss_pred -----------hhhhhh-hhhhhhhhccccccchhhccCCCCccccCCcccccccchhhccCCCcccccc
Confidence 222222 2333444556777888888999999999999888888888877777766543
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-48 Score=430.25 Aligned_cols=362 Identities=25% Similarity=0.430 Sum_probs=311.5
Q ss_pred ceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 233 ~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVW 312 (1491)
.++-..+.||.++|.|++|+|+|.+||||+.|.++++||+.|..+++++++|...|.||+|+|||+.||+|+.||+|++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCce-eeeccCCCceEEEEecCCCC--ceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 313 RLPDGLPI-SVLRGHTAAVTAIAFSPRPG--SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 313 Dl~tgk~i-~~L~gHs~~VtsLaFSPdg~--s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
|..+|+++ ..|.+|...|++++|.|-.. ...+|++++.||.|+|||+..+.++..+ .
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l--------------------s 244 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL--------------------S 244 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe--------------------c
Confidence 99998765 57899999999999987421 1128999999999999999988877665 4
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
+|...|+|+.|-.+| +|++|+.|++|++|+... +.....+.+|...|+.++.+.+...............
T Consensus 245 gHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~d---------G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~ 314 (480)
T KOG0271|consen 245 GHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALD---------GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKP 314 (480)
T ss_pred cCccceEEEEEcCCc-eEEecCCCceEEEEEccc---------hhHHHhhcccchheeeeeccchhhhhccccccccccC
Confidence 699999999997665 899999999999999965 5678899999999999999855311111000000000
Q ss_pred CC---------cccc-ccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC
Q 000454 470 ST---------PKFK-NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1491)
Q Consensus 470 ~~---------~~~~-~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1491)
.. .+.. ..-..+..+++|+.|+++.+|+.... ..++.+..+|
T Consensus 315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~----------------------------kkpi~rmtgH 366 (480)
T KOG0271|consen 315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS----------------------------KKPITRMTGH 366 (480)
T ss_pred CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc----------------------------ccchhhhhch
Confidence 00 0000 01123468999999999999987642 2567788899
Q ss_pred CCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~ 619 (1491)
..-|+.+.||||+++||+++.|..|++|+..+|+.+.+|.||-+.|+.++|+. +.++|++|+.|.+++||++.+.++..
T Consensus 367 q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 367 QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecc
Confidence 99999999999999999999999999999999999999999999999999998 88999999999999999999999999
Q ss_pred EEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 620 IYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 620 ~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
.+.+|...|+++.|+|||+.+++|+.|..+++|.
T Consensus 446 DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 446 DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=381.58 Aligned_cols=332 Identities=21% Similarity=0.360 Sum_probs=288.3
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000454 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 276 ~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVr 355 (1491)
+|-..+.||..+|.|++|+|+|..||+|+.|.++|+||+.+..++.+.++|...|.|++|+||++ .|++|+.||.|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk---~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK---KIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc---hhhccccCCeEE
Confidence 45567889999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred EEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-----CCCEEEEecCCceEEEEeCCCCCCCCCC
Q 000454 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-----NGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1491)
Q Consensus 356 IWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-----DG~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1491)
+||..+++..... ..+|...|++++|.| ..++||+++.||.|+|||+..
T Consensus 183 lwdpktg~~~g~~-------------------l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~------- 236 (480)
T KOG0271|consen 183 LWDPKTGQQIGRA-------------------LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL------- 236 (480)
T ss_pred EecCCCCCccccc-------------------ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC-------
Confidence 9999998865443 467999999999976 578999999999999999954
Q ss_pred CCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccc
Q 000454 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
..++..+.+|+..|+||.|-..+ ++++||.|++|++|+...++
T Consensus 237 --~~~~~~lsgHT~~VTCvrwGG~g---------------------------liySgS~DrtIkvw~a~dG~-------- 279 (480)
T KOG0271|consen 237 --GTCVRTLSGHTASVTCVRWGGEG---------------------------LIYSGSQDRTIKVWRALDGK-------- 279 (480)
T ss_pred --ceEEEEeccCccceEEEEEcCCc---------------------------eEEecCCCceEEEEEccchh--------
Confidence 56888999999999999998765 89999999999999987643
Q ss_pred ccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc-----------C-------------------------CCCE
Q 000454 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS-----------L-------------------------DNRF 554 (1491)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS-----------P-------------------------DG~~ 554 (1491)
....+.+|...|+.++++ | .+..
T Consensus 280 ---------------------~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er 338 (480)
T KOG0271|consen 280 ---------------------LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER 338 (480)
T ss_pred ---------------------HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence 233445555555555544 2 2346
Q ss_pred EEEEeccceEEEEECCC-CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEE
Q 000454 555 VLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKF 633 (1491)
Q Consensus 555 LaSGs~DG~IrIWDl~t-gkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~Vtslaf 633 (1491)
|++|+.|.++.+|+-.. .+++..+.||...|+.+.|+| +++++|+++.|..|++|+..+|+.+.+|.+|-.+|+.++|
T Consensus 339 lVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw 417 (480)
T KOG0271|consen 339 LVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW 417 (480)
T ss_pred eEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence 99999999999999754 558889999999999999999 8899999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcccccccceeeecCCCcceEEccCCCEEEccccccCccccCCCccccccCCCCCCc
Q 000454 634 SPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEP 713 (1491)
Q Consensus 634 SPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~ 713 (1491)
|.|.++|++|+.|.+|+||++.+.++...++
T Consensus 418 saDsRLlVS~SkDsTLKvw~V~tkKl~~DLp------------------------------------------------- 448 (480)
T KOG0271|consen 418 SADSRLLVSGSKDSTLKVWDVRTKKLKQDLP------------------------------------------------- 448 (480)
T ss_pred ccCccEEEEcCCCceEEEEEeeeeeecccCC-------------------------------------------------
Confidence 9999999999999999999997754433221
Q ss_pred chhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEecc
Q 000454 714 YQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQP 753 (1491)
Q Consensus 714 ~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~ 753 (1491)
++.-.|..+.|||||.++|.| .-|.-+++|.
T Consensus 449 ------Gh~DEVf~vDwspDG~rV~sg---gkdkv~~lw~ 479 (480)
T KOG0271|consen 449 ------GHADEVFAVDWSPDGQRVASG---GKDKVLRLWR 479 (480)
T ss_pred ------CCCceEEEEEecCCCceeecC---CCceEEEeec
Confidence 133345569999999999999 8888899984
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=384.39 Aligned_cols=431 Identities=19% Similarity=0.281 Sum_probs=347.6
Q ss_pred CCcceeeeccccCCCcccccceeEEEEcc-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEE
Q 000454 213 APSIRAACYAIAKPSTMVQKMQNIKRVRG-HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDL 291 (1491)
Q Consensus 213 ~~sl~s~~~~~a~~~~~v~t~k~v~tL~G-H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsL 291 (1491)
...+..+........|.+++.+.++.+++ |.++|.-++|+|.|..||+|+.||.|+|||+..+.+.+.|+||.+.|.++
T Consensus 74 ~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl 153 (775)
T KOG0319|consen 74 EEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSL 153 (775)
T ss_pred ccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEE
Confidence 34455555666667788888999999998 99999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC--EEEEEECCCeEEEEECCCCC-ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCcccee
Q 000454 292 AVSSNNA--LVASASNDCIIRVWRLPDGL-PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1491)
Q Consensus 292 afSPDG~--lLASGS~DGtIrVWDl~tgk-~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i 368 (1491)
.|.|+-. +|++|..|++|++||+.+.. ++.++..|...|++++|.+++. .+++++.|..|.|||+.+.+....+
T Consensus 154 ~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---~~ls~~RDkvi~vwd~~~~~~l~~l 230 (775)
T KOG0319|consen 154 LFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---ELLSVGRDKVIIVWDLVQYKKLKTL 230 (775)
T ss_pred EeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---eEEEeccCcEEEEeehhhhhhhhee
Confidence 9999755 68999999999999999655 4888999999999999999976 7788888888888887433322211
Q ss_pred ecC----------C----------------------------------C-CCccc-------------------------
Q 000454 369 YIP----------R----------------------------------P-SDAVA------------------------- 378 (1491)
Q Consensus 369 ~~~----------~----------------------------------~-~~~~~------------------------- 378 (1491)
... . + .....
T Consensus 231 p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 231 PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEc
Confidence 100 0 0 00000
Q ss_pred ----------------------C-------------------CCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEE
Q 000454 379 ----------------------G-------------------RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLAR 417 (1491)
Q Consensus 379 ----------------------g-------------------~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~Ir 417 (1491)
| ..........+|...|.++....+|-+|++|+.|.+++
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEE
Confidence 0 00000113356777888888667788999999999999
Q ss_pred EEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEe
Q 000454 418 VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWI 497 (1491)
Q Consensus 418 VWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWD 497 (1491)
+|.+.... ....++....+|.+.|.+|+++..+ ...|+++|.|+++++|+
T Consensus 391 lWr~~~~~-----~~~~~~a~~~gH~~svgava~~~~~-------------------------asffvsvS~D~tlK~W~ 440 (775)
T KOG0319|consen 391 LWRLNNNC-----SKSLCVAQANGHTNSVGAVAGSKLG-------------------------ASFFVSVSQDCTLKLWD 440 (775)
T ss_pred EEEecCCc-----chhhhhhhhcccccccceeeecccC-------------------------ccEEEEecCCceEEEec
Confidence 99884321 1234566778999999999997654 35899999999999999
Q ss_pred cCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEE
Q 000454 498 PRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS 577 (1491)
Q Consensus 498 l~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~t 577 (1491)
+...+.... +...........|...|++++++|+.++||||+.|.+.+||++..+.+..+
T Consensus 441 l~~s~~~~~--------------------~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v 500 (775)
T KOG0319|consen 441 LPKSKETAF--------------------PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV 500 (775)
T ss_pred CCCcccccc--------------------cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE
Confidence 875221000 111112223457899999999999999999999999999999999999999
Q ss_pred EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 578 LTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 578 L~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
|.||...|++|.|+| ..++++|+|.|++|+||.+.++.++.+|.+|...|..+.|-.+|+.|++++.||-|+||++.++
T Consensus 501 LsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 501 LSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred eeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 999999999999999 6789999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccccceeeecCCCcceEEccCCCEEEccccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeE
Q 000454 658 ESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKL 737 (1491)
Q Consensus 658 ~~~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~L 737 (1491)
++...+. .+.-.+++++-+|.+..+
T Consensus 580 eC~~tlD-------------------------------------------------------~H~DrvWaL~~~~~~~~~ 604 (775)
T KOG0319|consen 580 ECEMTLD-------------------------------------------------------AHNDRVWALSVSPLLDMF 604 (775)
T ss_pred hhhhhhh-------------------------------------------------------hccceeEEEeecCcccee
Confidence 7765431 133345558889999999
Q ss_pred EEeeCCCCCCcEEeccCC
Q 000454 738 AVGPDFSLDQGYQLQPLA 755 (1491)
Q Consensus 738 Avg~d~s~d~~v~lw~~~ 755 (1491)
++| +.|+.+.+|--.
T Consensus 605 ~tg---g~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 605 VTG---GGDGRIIFWKDV 619 (775)
T ss_pred Eec---CCCeEEEEeecC
Confidence 999 899999999653
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=361.91 Aligned_cols=291 Identities=27% Similarity=0.450 Sum_probs=268.4
Q ss_pred ceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEE
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN--NALVASASNDCIIR 310 (1491)
Q Consensus 233 ~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPD--G~lLASGS~DGtIr 310 (1491)
+.++..--|-+.+|..+.|++|++.|||||.+|.++||+..+...+.+|+||...|.++.|+|. +..||||+.||+|+
T Consensus 165 ~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 165 LELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVK 244 (459)
T ss_pred hhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCcee
Confidence 3344444577889999999999999999999999999999999999999999999999999996 66999999999999
Q ss_pred EEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCC
Q 000454 311 VWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1491)
Q Consensus 311 VWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~ 390 (1491)
+|++.+..++..+.+|...|..++|+|+|+ +|++++.|.+-++||+.++..+... .+
T Consensus 245 lw~~~~e~~l~~l~gH~~RVs~VafHPsG~---~L~TasfD~tWRlWD~~tk~ElL~Q--------------------EG 301 (459)
T KOG0272|consen 245 LWKLSQETPLQDLEGHLARVSRVAFHPSGK---FLGTASFDSTWRLWDLETKSELLLQ--------------------EG 301 (459)
T ss_pred eeccCCCcchhhhhcchhhheeeeecCCCc---eeeecccccchhhcccccchhhHhh--------------------cc
Confidence 999999999999999999999999999998 9999999999999999988754432 56
Q ss_pred CCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCC
Q 000454 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1491)
Q Consensus 391 h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~ 470 (1491)
|...|.+|+|.+||.++++|+.|..-+|||+++ +..+..+.+|...|.+|.|+|+|
T Consensus 302 Hs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt---------gr~im~L~gH~k~I~~V~fsPNG--------------- 357 (459)
T KOG0272|consen 302 HSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT---------GRCIMFLAGHIKEILSVAFSPNG--------------- 357 (459)
T ss_pred cccccceeEecCCCceeeccCccchhheeeccc---------CcEEEEecccccceeeEeECCCc---------------
Confidence 999999999999999999999999999999988 56788999999999999999997
Q ss_pred CccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC
Q 000454 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL 550 (1491)
Q Consensus 471 ~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP 550 (1491)
..|+||+.|++++|||++..+ .+..+..|..-|+.|.|+|
T Consensus 358 -----------y~lATgs~Dnt~kVWDLR~r~-----------------------------~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 358 -----------YHLATGSSDNTCKVWDLRMRS-----------------------------ELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred -----------eEEeecCCCCcEEEeeecccc-----------------------------cceecccccchhhheEecc
Confidence 489999999999999999633 2455678999999999998
Q ss_pred -CCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 551 -DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 551 -DG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
.|.+|++++.|++++||...++.+++++.||.+.|.+++++| ++.+++|++.|.+|++|.
T Consensus 398 ~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 398 QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEEeccCceeeecc
Confidence 789999999999999999999999999999999999999999 788999999999999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=345.02 Aligned_cols=475 Identities=17% Similarity=0.291 Sum_probs=363.7
Q ss_pred ccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 000454 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAVSSNNALVASASND 306 (1491)
Q Consensus 229 ~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~--~l~tL~gH~~~VtsLafSPDG~lLASGS~D 306 (1491)
.+.....+..+..|...|+-..|+|.|-|+|+|...|.|+|||..... +..+++.-.++|.+|+|+.+++.|++.+..
T Consensus 45 ~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEG 124 (603)
T KOG0318|consen 45 NIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEG 124 (603)
T ss_pred ECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecC
Confidence 344556677889999999999999999999999999999999987532 234566778999999999999999887753
Q ss_pred ----CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCC
Q 000454 307 ----CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1491)
Q Consensus 307 ----GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~ 382 (1491)
|.+.+|| +|..+..+.||...|.++.|-|... +++++|+.|++|.+|+-..-++
T Consensus 125 rerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRP--fRi~T~sdDn~v~ffeGPPFKF------------------ 182 (603)
T KOG0318|consen 125 RERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRP--FRIATGSDDNTVAFFEGPPFKF------------------ 182 (603)
T ss_pred ccceeEEEEec--CCCccceeeccceeEeeeeccCCCc--eEEEeccCCCeEEEeeCCCeee------------------
Confidence 4456665 7888999999999999999999854 7999999999999997532222
Q ss_pred CCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeec---CCCCCceEEEEccCccccc
Q 000454 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS---GHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 383 ~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~---gH~~~V~sVafSpdg~as~ 459 (1491)
....+.|..-|.|+.|+|||.+||+.+.||.|.+||-.++ ..+..+. +|.+.|.++.|+|++
T Consensus 183 --k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg---------e~vg~l~~~~aHkGsIfalsWsPDs---- 247 (603)
T KOG0318|consen 183 --KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG---------EKVGELEDSDAHKGSIFALSWSPDS---- 247 (603)
T ss_pred --eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc---------cEEEEecCCCCccccEEEEEECCCC----
Confidence 2334568889999999999999999999999999998763 4455555 999999999999996
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccc------------cccccccccCCC--CCCCCC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKA------------ARWTQAYHLKVP--PPPMPP 525 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~------------~~~~~~~~l~~~--~~~~~~ 525 (1491)
.+|++++.|.+++|||+.+.+..... ..|.....+.+. ......
T Consensus 248 ----------------------~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~l 305 (603)
T KOG0318|consen 248 ----------------------TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYL 305 (603)
T ss_pred ----------------------ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEe
Confidence 69999999999999999987543211 122221111111 111112
Q ss_pred CCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEE-eCCCCCeEEEEEecCCCcEEEEEeCC
Q 000454 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYD 604 (1491)
Q Consensus 526 ~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL-~gHs~~VtsLafSPdd~~lLaSgS~D 604 (1491)
.+....+...+.+|...|++++.++|+++|++|+.||.|.-|+..+|..-... .+|...|.+++.+. ...+++++.|
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~--~~~~~t~g~D 383 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE--SGELFTIGWD 383 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC--CCcEEEEecC
Confidence 22333467788999999999999999999999999999999999988776554 78999999998864 3455689999
Q ss_pred CcEEEEeCCCC------------ceE-------------------EEEeeC--------CcceEEEEEcCCCCEEEEEeC
Q 000454 605 GKTIVWDIWEG------------IPI-------------------RIYEIS--------RFRLVDGKFSPDGASIILSDD 645 (1491)
Q Consensus 605 GtIrIWDl~tG------------k~l-------------------~~l~~h--------~~~VtslafSPDG~~LAsgs~ 645 (1491)
.++++.++..+ ++. ..++.+ .....+++++|++..+|+|+.
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~ 463 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQ 463 (603)
T ss_pred CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecc
Confidence 99999976321 000 011111 124557899999999999999
Q ss_pred CCcEEEEECCCCccc--------ccccceeeecCCCcceEE-ccCCCEEEccccccCccccCCCccccccCCCCCCcchh
Q 000454 646 VGQLYILNTGQGESQ--------KDAKYDQFFLGDYRPLVQ-DTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQT 716 (1491)
Q Consensus 646 DG~I~IWdl~tG~~~--------~~~~~~~~fs~D~r~La~-d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~ 716 (1491)
||.|+||.+..+++. ...+..+.|+||+..|+. |..+.++ +|++....+- ...+.
T Consensus 464 Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv---------~yd~~s~~~~------~~~w~- 527 (603)
T KOG0318|consen 464 DGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVV---------LYDVASREVK------TNRWA- 527 (603)
T ss_pred cceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEE---------EEEcccCcee------cceee-
Confidence 999999999876642 234567899999999874 5666665 3665443331 11111
Q ss_pred hhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCcccc---ccCCcccccccccccCCcCCCCCCCc
Q 000454 717 MYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVM---IDPLPEFIDVMDWEPENEVQSDDNDS 786 (1491)
Q Consensus 717 l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~~~l---ieplp~~i~~~~W~P~~ev~s~d~~~ 786 (1491)
+ +...+..++|||+..++|+| ++|..|.+|.+..|... ...++.-+..+.|.-+.++++...|.
T Consensus 528 -F--HtakI~~~aWsP~n~~vATG---SlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da 594 (603)
T KOG0318|consen 528 -F--HTAKINCVAWSPNNKLVATG---SLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDA 594 (603)
T ss_pred -e--eeeeEEEEEeCCCceEEEec---cccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcc
Confidence 1 66789999999999999999 99999999999876522 22344457889999999999887775
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=352.57 Aligned_cols=287 Identities=20% Similarity=0.307 Sum_probs=267.0
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCC
Q 000454 282 RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1491)
Q Consensus 282 ~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~t 361 (1491)
.|...+|..+.|+.|+..||||+.+|.++||+..++..+.+|.+|...|.++.|+|.... ..|++|+.||+|++|++.+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~-~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSD-LNLATASADGTVKLWKLSQ 250 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCc-cceeeeccCCceeeeccCC
Confidence 356789999999999999999999999999999999999999999999999999998411 2799999999999999998
Q ss_pred CCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecC
Q 000454 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1491)
Q Consensus 362 g~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g 441 (1491)
...+..+ .+|...|..++|+|+|++|++++.|.+-++||+.+ ...+....|
T Consensus 251 e~~l~~l--------------------~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t---------k~ElL~QEG 301 (459)
T KOG0272|consen 251 ETPLQDL--------------------EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET---------KSELLLQEG 301 (459)
T ss_pred Ccchhhh--------------------hcchhhheeeeecCCCceeeecccccchhhccccc---------chhhHhhcc
Confidence 7766665 45889999999999999999999999999999987 456777899
Q ss_pred CCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCC
Q 000454 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1491)
Q Consensus 442 H~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~ 521 (1491)
|...|.+++|.++| ..+++|+.|..-+|||+++++
T Consensus 302 Hs~~v~~iaf~~DG--------------------------SL~~tGGlD~~~RvWDlRtgr------------------- 336 (459)
T KOG0272|consen 302 HSKGVFSIAFQPDG--------------------------SLAATGGLDSLGRVWDLRTGR------------------- 336 (459)
T ss_pred cccccceeEecCCC--------------------------ceeeccCccchhheeecccCc-------------------
Confidence 99999999999997 689999999999999999854
Q ss_pred CCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEE
Q 000454 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601 (1491)
Q Consensus 522 ~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSg 601 (1491)
.+..+.+|...|..|+|+|+|-.||||+.|++++|||++...++.++.+|.+.|+.|.|+|..+.+|+|+
T Consensus 337 ----------~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 337 ----------CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred ----------EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc
Confidence 4556678999999999999999999999999999999999999999999999999999999899999999
Q ss_pred eCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 602 S~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
++|++++||...++.+++.+.+|.+.|.++.+++||++|++++.|.+|++|.
T Consensus 407 syD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 407 SYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=327.25 Aligned_cols=292 Identities=22% Similarity=0.393 Sum_probs=264.8
Q ss_pred ceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 233 ~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVW 312 (1491)
++.-++|+||.+.|+++.|++|.++|+++|.||.+.|||.-|...++.+.-...+|..++|+|.|+++|+|+.|....||
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 45568999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred ECCCC------CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 313 RLPDG------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 313 Dl~tg------k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
++.+. ...+.+.+|++.+.++.|.+|+ .|++++.|.++.+||+++++.+..+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~----~ilT~SGD~TCalWDie~g~~~~~f------------------ 182 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN----HILTGSGDMTCALWDIETGQQTQVF------------------ 182 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCC----ceEecCCCceEEEEEcccceEEEEe------------------
Confidence 99854 3456789999999999999976 6999999999999999999877776
Q ss_pred CCCCCCcceEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccC
Q 000454 387 SAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 387 s~~~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
.+|.+.|.+++++| +++.|++|+.|+..+|||++. ......+.+|...|++|.|.|+|
T Consensus 183 --~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~---------~~c~qtF~ghesDINsv~ffP~G---------- 241 (343)
T KOG0286|consen 183 --HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS---------GQCVQTFEGHESDINSVRFFPSG---------- 241 (343)
T ss_pred --cCCcccEEEEecCCCCCCeEEecccccceeeeeccC---------cceeEeecccccccceEEEccCC----------
Confidence 46999999999999 999999999999999999987 46788999999999999999997
Q ss_pred CCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1491)
.-|++|+.|+++++||++..+..... .-.....+|++
T Consensus 242 ----------------~afatGSDD~tcRlyDlRaD~~~a~y---------------------------s~~~~~~gitS 278 (343)
T KOG0286|consen 242 ----------------DAFATGSDDATCRLYDLRADQELAVY---------------------------SHDSIICGITS 278 (343)
T ss_pred ----------------CeeeecCCCceeEEEeecCCcEEeee---------------------------ccCcccCCcee
Confidence 58999999999999999975422110 01123457999
Q ss_pred EEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 546 VafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
++||..|++|++|..|.++.|||.-.++.+..|.||.+.|++|..+| ++..|+||+.|.+|+||.
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999999999999999 889999999999999994
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=339.45 Aligned_cols=327 Identities=23% Similarity=0.433 Sum_probs=283.4
Q ss_pred EEEEccCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCC--Ce--EEEEEe------c----CCCCeEEEEEcCCCCEE
Q 000454 236 IKRVRGHRNAVYCAIFDRSGR-YVITGSDDRLVKIWSMET--AY--CLASCR------G----HEGDITDLAVSSNNALV 300 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~-~LATGS~DGtIrIWDl~T--g~--~l~tL~------g----H~~~VtsLafSPDG~lL 300 (1491)
++.+. |...|++.+|+|-.. .||+|+.|-+.++|++.. .. ....|+ + ....|++++|+.+|.+|
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 34444 999999999999766 899999999999999863 11 111121 1 24689999999999999
Q ss_pred EEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCC
Q 000454 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 301 ASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
|+|+.||.++||+. +|..+.+|..|.++|.++.|+..+. +|++++.|+++.+||..++...+.+.+
T Consensus 251 atG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~---yilS~~vD~ttilwd~~~g~~~q~f~~---------- 316 (524)
T KOG0273|consen 251 ATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGT---YILSGGVDGTTILWDAHTGTVKQQFEF---------- 316 (524)
T ss_pred EEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCC---EEEeccCCccEEEEeccCceEEEeeee----------
Confidence 99999999999995 6888999999999999999999998 999999999999999999887776643
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccc
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
|......+.|-. ..-|++.+.|+.|+|+.+.. ..++..+.+|.+.|.++.|.|.+
T Consensus 317 ----------~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~---------~~P~~t~~GH~g~V~alk~n~tg----- 371 (524)
T KOG0273|consen 317 ----------HSAPALDVDWQS-NDEFATSSTDGCIHVCKVGE---------DRPVKTFIGHHGEVNALKWNPTG----- 371 (524)
T ss_pred ----------ccCCccceEEec-CceEeecCCCceEEEEEecC---------CCcceeeecccCceEEEEECCCC-----
Confidence 344446677754 45688999999999999854 45778889999999999999986
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 540 (1491)
..|+++|.|++++||.... ......+..|.
T Consensus 372 ---------------------~LLaS~SdD~TlkiWs~~~-----------------------------~~~~~~l~~Hs 401 (524)
T KOG0273|consen 372 ---------------------SLLASCSDDGTLKIWSMGQ-----------------------------SNSVHDLQAHS 401 (524)
T ss_pred ---------------------ceEEEecCCCeeEeeecCC-----------------------------Ccchhhhhhhc
Confidence 6899999999999998764 23445677889
Q ss_pred CCeeEEEEcCCC---------CEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 541 RGVNMIVWSLDN---------RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 541 ~~VtsVafSPDG---------~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
..|..+.|+|.| ..+++++.|++|++||+..|.++++|..|..+|++|+|+| +++++|+|+.||.|.||+
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWS 480 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEecc
Confidence 999999999965 4799999999999999999999999999999999999999 889999999999999999
Q ss_pred CCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 612 IWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 612 l~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
+.+++.++.+. ..+.|..++|+.+|.+|.++-.||.+.+.|+
T Consensus 481 ~~~~~l~~s~~-~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 481 TKTGKLVKSYQ-GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ccchheeEeec-CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 99999999998 5667999999999999999999999999987
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=335.79 Aligned_cols=438 Identities=16% Similarity=0.203 Sum_probs=344.7
Q ss_pred ccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 000454 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC--LASCRGHEGDITDLAVSSNNALVASASND 306 (1491)
Q Consensus 229 ~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~--l~tL~gH~~~VtsLafSPDG~lLASGS~D 306 (1491)
.+..+.+.+++.||-..|++|.|+.|.++|++||.|.+++||++...+- ...+.+|.+.|..+-|..+...|++.+.|
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskd 210 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKD 210 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecC
Confidence 4566788999999999999999999999999999999999999987665 56678999999999999999999999999
Q ss_pred CeEEEEECCC-----------------------CCc-----e------eeeccCCCceEEEEecCCCCceEEEEEEeCCC
Q 000454 307 CIIRVWRLPD-----------------------GLP-----I------SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 352 (1491)
Q Consensus 307 GtIrVWDl~t-----------------------gk~-----i------~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DG 352 (1491)
|.|.+|.... ++. . .-+......|++.+|++... .|+++-..|
T Consensus 211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~---~lvvgFssG 287 (893)
T KOG0291|consen 211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTN---LLVVGFSSG 287 (893)
T ss_pred ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCce---EEEEEecCC
Confidence 9999997651 111 0 01122336799999999876 899999999
Q ss_pred cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCC-ceEEEEeCCCCCCCCCCC
Q 000454 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD-TLARVWNACKPNTDDSDQ 431 (1491)
Q Consensus 353 tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~D-G~IrVWDl~t~~~~~s~~ 431 (1491)
...+|++..-.++..+.+ ....|..++|+..|.+||.|+.. |.+.||+...
T Consensus 288 ~f~LyelP~f~lih~LSi--------------------s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs-------- 339 (893)
T KOG0291|consen 288 EFGLYELPDFNLIHSLSI--------------------SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS-------- 339 (893)
T ss_pred eeEEEecCCceEEEEeec--------------------ccceeeEEEecccCCEEEEcCCccceEEEEEeec--------
Confidence 999999988777766643 45679999999999999999875 8999999965
Q ss_pred CCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccc
Q 000454 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1491)
Q Consensus 432 ~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~ 511 (1491)
..-+....+|...+++++++|+| +++++|+.||.|+|||..+
T Consensus 340 -EsYVlKQQgH~~~i~~l~YSpDg--------------------------q~iaTG~eDgKVKvWn~~S----------- 381 (893)
T KOG0291|consen 340 -ESYVLKQQGHSDRITSLAYSPDG--------------------------QLIATGAEDGKVKVWNTQS----------- 381 (893)
T ss_pred -cceeeeccccccceeeEEECCCC--------------------------cEEEeccCCCcEEEEeccC-----------
Confidence 34566678999999999999997 6999999999999999885
Q ss_pred cccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCC-CeEEEEE
Q 000454 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTE-STYVLDV 590 (1491)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~-~VtsLaf 590 (1491)
+.+...+..|...|+.+.|+..|+.|++++.||+|+.||+...+..+++..... ...||+.
T Consensus 382 ------------------gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscvav 443 (893)
T KOG0291|consen 382 ------------------GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAV 443 (893)
T ss_pred ------------------ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEE
Confidence 345677888999999999999999999999999999999999999999976543 3567888
Q ss_pred ecCCCcEEEEEeCCC-cEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc------cccc
Q 000454 591 HPFNPRIAMSAGYDG-KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES------QKDA 663 (1491)
Q Consensus 591 SPdd~~lLaSgS~DG-tIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~------~~~~ 663 (1491)
.| .+.++..|+.|. .|.||++.+|+++..+.+|.++|.+++|+|+|..||+++.|.+|++|++-.... +...
T Consensus 444 D~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd 522 (893)
T KOG0291|consen 444 DP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSD 522 (893)
T ss_pred cC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccc
Confidence 88 667777787775 699999999999999999999999999999999999999999999999854421 1222
Q ss_pred cceeeecCCCcceEEccCCCEEEc-cccccCccccCCCccccccCCCC-CCcchhhhhhcccccccEEEcCCCCeEEEee
Q 000454 664 KYDQFFLGDYRPLVQDTYGNVLDQ-ETQLAPHRRNLQDPLCDSAMIPY-PEPYQTMYQQRRLGALGIEWRPSSLKLAVGP 741 (1491)
Q Consensus 664 ~~~~~fs~D~r~La~d~~G~vLde-~tq~~p~Lw~l~~~l~d~s~~p~-p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~ 741 (1491)
...+.|.||++.|++..-.+.+.. +...+..+-.+ ++.-|..+... ...+.+......-....|.||+||..+..|
T Consensus 523 vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I-dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAg- 600 (893)
T KOG0291|consen 523 VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI-DGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAG- 600 (893)
T ss_pred eeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc-cchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEec-
Confidence 356799999999987765544321 12111111111 11111111110 111111111122335679999999999998
Q ss_pred CCCCCCcEEeccCCCcc
Q 000454 742 DFSLDQGYQLQPLADLD 758 (1491)
Q Consensus 742 d~s~d~~v~lw~~~~~~ 758 (1491)
.....|-+++..++.
T Consensus 601 --G~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 601 --GESNSICIYDVPEGV 615 (893)
T ss_pred --CCcccEEEEECchhh
Confidence 677789999987654
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=346.70 Aligned_cols=384 Identities=19% Similarity=0.244 Sum_probs=313.4
Q ss_pred CCcccccccccccccCccccccCCCcceeeeccccCCCcccccceeEEEEccCCCCEEEEEEcCCCC--EEEEEeCCCeE
Q 000454 190 MYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGR--YVITGSDDRLV 267 (1491)
Q Consensus 190 ~h~d~V~~l~~r~~Gg~~~~~~~~~sl~s~~~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~--~LATGS~DGtI 267 (1491)
.|...|-...+.+.|+ .++..+.....+.|++....+.+.|+||.+.|.++.|.|+-. .|++|..|++|
T Consensus 103 ~He~Pvi~ma~~~~g~---------LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v 173 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGT---------LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTV 173 (775)
T ss_pred ccCCCeEEEEEcCCCc---------eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceE
Confidence 3555555666665554 344555667778899999999999999999999999999765 48999999999
Q ss_pred EEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCc---------------------------
Q 000454 268 KIWSMETAY-CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP--------------------------- 319 (1491)
Q Consensus 268 rIWDl~Tg~-~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~--------------------------- 319 (1491)
++||+.+.. ++.++..|...|++++|++|+..+++++.|..|.|||+.+.+.
T Consensus 174 ~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 174 RVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI 253 (775)
T ss_pred EEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence 999998655 4888899999999999999999999999999999998722000
Q ss_pred --------------------------------------------------------------------------------
Q 000454 320 -------------------------------------------------------------------------------- 319 (1491)
Q Consensus 320 -------------------------------------------------------------------------------- 319 (1491)
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence
Q ss_pred ------------------------eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCC
Q 000454 320 ------------------------ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1491)
Q Consensus 320 ------------------------i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~ 375 (1491)
...+.||+..|.++....+|- +|++|+.|.++++|.++.+......
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~---llat~sKD~svilWr~~~~~~~~~~------- 403 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGD---LLATGSKDKSVILWRLNNNCSKSLC------- 403 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCc---EEEEecCCceEEEEEecCCcchhhh-------
Confidence 011335666666666444443 8999999999999988544322211
Q ss_pred cccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 376 ~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
.....+|...|.+++++..+ .+|++++.|+++++|++...+................|...|++|+++|+
T Consensus 404 ---------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n 474 (775)
T KOG0319|consen 404 ---------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN 474 (775)
T ss_pred ---------hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC
Confidence 22335689999999997765 68999999999999999763222111111222345689999999999997
Q ss_pred ccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCce
Q 000454 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534 (1491)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 534 (1491)
. ..|+|||.|.+.+||++... ....
T Consensus 475 d--------------------------kLiAT~SqDktaKiW~le~~-----------------------------~l~~ 499 (775)
T KOG0319|consen 475 D--------------------------KLIATGSQDKTAKIWDLEQL-----------------------------RLLG 499 (775)
T ss_pred C--------------------------ceEEecccccceeeecccCc-----------------------------eEEE
Confidence 4 68999999999999998742 3456
Q ss_pred eccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000454 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1491)
Q Consensus 535 ~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t 614 (1491)
.+.+|..+|.++.|+|..+.|++++.|++|+||.+.++.++++|.||...|..+.|-. ++..|+||+.||.|+||++.+
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEeccc
Confidence 6789999999999999999999999999999999999999999999999999999988 677888999999999999999
Q ss_pred CceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 615 GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 615 Gk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
+.|+.++..|...|++++.+|.+.++++|+.||.|.+|.=.+-
T Consensus 579 ~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 579 NECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred hhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999999999999999999999999999999999976554
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=330.90 Aligned_cols=426 Identities=19% Similarity=0.280 Sum_probs=335.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA--------YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg--------~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWD 313 (1491)
...+|.||.|||+|+++|.|.. ..+.||..... .+.+++.+|...|++|.|+.|.++|++|+.|.+++||+
T Consensus 95 fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~ 173 (893)
T KOG0291|consen 95 FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFG 173 (893)
T ss_pred ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEE
Confidence 3578999999999999998864 68999987532 34567789999999999999999999999999999999
Q ss_pred CCCCCc--eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC--CccceeecCCCCCcc----cCCC-C--
Q 000454 314 LPDGLP--ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS--QFSPRIYIPRPSDAV----AGRN-M-- 382 (1491)
Q Consensus 314 l~tgk~--i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg--~~~~~i~~~~~~~~~----~g~~-~-- 382 (1491)
+...+- ...+.+|...|.+.-|..+.. .|++.+.||.+.+|..... .....-.-....... .+.. .
T Consensus 174 v~~~k~~~~~~l~gHkd~VvacfF~~~~~---~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~ 250 (893)
T KOG0291|consen 174 VDGNKNLFTYALNGHKDYVVACFFGANSL---DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHK 250 (893)
T ss_pred eccccccceEeccCCCcceEEEEeccCcc---eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcc
Confidence 987665 567789999999999999876 7999999999999987622 100000000000000 0000 0
Q ss_pred -----CCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccc
Q 000454 383 -----APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVA 457 (1491)
Q Consensus 383 -----~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~a 457 (1491)
............|++++|++.-+.||+|-..|...+|.+.. ...+..+.-....|..+.|+..|
T Consensus 251 ~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~---------f~lih~LSis~~~I~t~~~N~tG-- 319 (893)
T KOG0291|consen 251 IFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD---------FNLIHSLSISDQKILTVSFNSTG-- 319 (893)
T ss_pred eEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC---------ceEEEEeecccceeeEEEecccC--
Confidence 00011122337899999999999999999999999999854 55677777777889999998665
Q ss_pred cccccccCCCCCCCccccccccCCCeEEEEeCC-CeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceec
Q 000454 458 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD-GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1491)
Q Consensus 458 s~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~D-GtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 536 (1491)
+.|+.|+.. |.+.||+..+.. -+...
T Consensus 320 ------------------------DWiA~g~~klgQLlVweWqsEs-----------------------------YVlKQ 346 (893)
T KOG0291|consen 320 ------------------------DWIAFGCSKLGQLLVWEWQSES-----------------------------YVLKQ 346 (893)
T ss_pred ------------------------CEEEEcCCccceEEEEEeeccc-----------------------------eeeec
Confidence 677776654 999999887632 23345
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc
Q 000454 537 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616 (1491)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk 616 (1491)
.+|...++++++||||++||+|+.||.|+|||..+|-|+.+|..|+..|+.+.|+. .++.+++++-||+|+.||+...+
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccc
Confidence 67889999999999999999999999999999999999999999999999999999 77888999999999999999999
Q ss_pred eEEEEeeCCc-ceEEEEEcCCCCEEEEEeCCC-cEEEEECCCCcccccc------cceeeecCCCcceEEccCCCEEEcc
Q 000454 617 PIRIYEISRF-RLVDGKFSPDGASIILSDDVG-QLYILNTGQGESQKDA------KYDQFFLGDYRPLVQDTYGNVLDQE 688 (1491)
Q Consensus 617 ~l~~l~~h~~-~VtslafSPDG~~LAsgs~DG-~I~IWdl~tG~~~~~~------~~~~~fs~D~r~La~d~~G~vLde~ 688 (1491)
..++|..... ...+++..|.|..+++|+.|. .|+||++.+|+++..+ ...+.|++++..|+..+....+.
T Consensus 426 NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVR-- 503 (893)
T KOG0291|consen 426 NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVR-- 503 (893)
T ss_pred eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEE--
Confidence 9999985432 455788888899999988765 7999999999986544 34557999999999888888763
Q ss_pred ccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCcc
Q 000454 689 TQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLD 758 (1491)
Q Consensus 689 tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~~ 758 (1491)
+|++-.-... -++++ ..-.+++++|+|||+.|||+ .+|+++.+|+.....
T Consensus 504 ------iW~if~s~~~------vEtl~-----i~sdvl~vsfrPdG~elaVa---TldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 504 ------IWDIFSSSGT------VETLE-----IRSDVLAVSFRPDGKELAVA---TLDGQITFFDIKEAV 553 (893)
T ss_pred ------EEEeeccCce------eeeEe-----eccceeEEEEcCCCCeEEEE---EecceEEEEEhhhce
Confidence 7886332111 11222 34568899999999999999 999999999996554
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=315.48 Aligned_cols=363 Identities=15% Similarity=0.189 Sum_probs=288.9
Q ss_pred ccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe---cCCCCeEEEEEcCCCCEEEEEECCC
Q 000454 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR---GHEGDITDLAVSSNNALVASASNDC 307 (1491)
Q Consensus 231 ~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~---gH~~~VtsLafSPDG~lLASGS~DG 307 (1491)
..++.-.+++.|..-|+|+.|+|||.++||++.||+|.|||-.+|+.+..|. +|.+.|.+|+|+||++.|++++.|.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 4567778899999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred eEEEEECCCCCceeeeccCC---CceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHT---AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs---~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~ 384 (1491)
+++|||+.+.+++.++.-.. ..-..+.|..+ .|++.+.+|+|.+++...+.....+
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd-----~lItVSl~G~in~ln~~d~~~~~~i---------------- 316 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD-----HLITVSLSGTINYLNPSDPSVLKVI---------------- 316 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEEeCC-----eEEEEEcCcEEEEecccCCChhhee----------------
Confidence 99999999999998886332 33445566643 7999999999999999888755444
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~ 464 (1491)
.+|...|++++.++++.+|++|+.||.|.-|+..++... ...-.+|...|.+++.+..
T Consensus 317 ----~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~--------~~~g~~h~nqI~~~~~~~~---------- 374 (603)
T KOG0318|consen 317 ----SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD--------RLAGKGHTNQIKGMAASES---------- 374 (603)
T ss_pred ----cccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc--------ccccccccceEEEEeecCC----------
Confidence 569999999999999999999999999999999764321 1112679999999988754
Q ss_pred CCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCC---------------
Q 000454 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR--------------- 529 (1491)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~--------------- 529 (1491)
..+++++.|.++++.++......... ...+...+.........
T Consensus 375 -----------------~~~~t~g~Dd~l~~~~~~~~~~t~~~-----~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~ 432 (603)
T KOG0318|consen 375 -----------------GELFTIGWDDTLRVISLKDNGYTKSE-----VVKLGSQPKGLAVLSDGGTAVVACISDIVLLQ 432 (603)
T ss_pred -----------------CcEEEEecCCeEEEEecccCcccccc-----eeecCCCceeEEEcCCCCEEEEEecCcEEEEe
Confidence 37999999999999987643211110 00111111111111100
Q ss_pred CCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceE--EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 000454 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV--HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKT 607 (1491)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll--~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtI 607 (1491)
...............+++++|++..+++|+.|+.|+||.+..+.+. ..+..|.++|++|+|+| ++.|||+|...+.|
T Consensus 433 ~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkv 511 (603)
T KOG0318|consen 433 DQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKV 511 (603)
T ss_pred cCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcE
Confidence 0011111223445788999999999999999999999999876643 35678999999999999 88999999999999
Q ss_pred EEEeCCCCceEE-EEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 000454 608 IVWDIWEGIPIR-IYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659 (1491)
Q Consensus 608 rIWDl~tGk~l~-~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~ 659 (1491)
.+||+.+.+... .+.-|...|.+++|||+.++||+|+-|-.|.||++.....
T Consensus 512 v~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 512 VLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred EEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence 999999887643 3344888999999999999999999999999999976543
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=300.49 Aligned_cols=295 Identities=21% Similarity=0.319 Sum_probs=238.9
Q ss_pred cceeEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECC-----CCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSME-----TAYCLASCRGHEGDITDLAVSSNNALVASASN 305 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpD-G~~LATGS~DGtIrIWDl~-----Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~ 305 (1491)
.+...-+|+||.+.|+.++..+. -..|++++.|.+|.+|++. .|..++.+.||...|..++.++||++.++++.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 35567799999999999999987 5688999999999999874 57889999999999999999999999999999
Q ss_pred CCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCC
Q 000454 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1491)
Q Consensus 306 DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~ 385 (1491)
|+++++||+.+|+..+.|.+|...|.+++|++|+. .+++|+.|.+|++|++-... ..++.
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~---qivSGSrDkTiklwnt~g~c-k~t~~---------------- 143 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR---QIVSGSRDKTIKLWNTLGVC-KYTIH---------------- 143 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCCc---eeecCCCcceeeeeeecccE-EEEEe----------------
Confidence 99999999999999999999999999999999987 99999999999999985432 11110
Q ss_pred CCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccC
Q 000454 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 386 ~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
...+...|.|+.|+|+ .
T Consensus 144 --~~~~~~WVscvrfsP~---------------------------------------------------~---------- 160 (315)
T KOG0279|consen 144 --EDSHREWVSCVRFSPN---------------------------------------------------E---------- 160 (315)
T ss_pred --cCCCcCcEEEEEEcCC---------------------------------------------------C----------
Confidence 0011344455555544 1
Q ss_pred CCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1491)
....|++++.|+++++||+++.+ ....+.+|...++.
T Consensus 161 --------------~~p~Ivs~s~DktvKvWnl~~~~-----------------------------l~~~~~gh~~~v~t 197 (315)
T KOG0279|consen 161 --------------SNPIIVSASWDKTVKVWNLRNCQ-----------------------------LRTTFIGHSGYVNT 197 (315)
T ss_pred --------------CCcEEEEccCCceEEEEccCCcc-----------------------------hhhccccccccEEE
Confidence 01356666666666666665422 22335668888999
Q ss_pred EEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeC-
Q 000454 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS- 624 (1491)
Q Consensus 546 VafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h- 624 (1491)
+++||||..+++|+.||.+.+||+..++.+..+. |...|.+++|+| +... +++..+..|+|||+.++.++..+...
T Consensus 198 ~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fsp-nryw-L~~at~~sIkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 198 VTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP-NRYW-LCAATATSIKIWDLESKAVVEELKLDG 274 (315)
T ss_pred EEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecC-Ccee-EeeccCCceEEEeccchhhhhhccccc
Confidence 9999999999999999999999999999988875 788999999999 5444 45666777999999999888776521
Q ss_pred --------CcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 625 --------RFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 625 --------~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
......++||+||+.|++|..|+.|++|.+.
T Consensus 275 ~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 275 IGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 1234578999999999999999999999874
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=327.13 Aligned_cols=431 Identities=16% Similarity=0.252 Sum_probs=333.8
Q ss_pred ceeeec-cccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEc
Q 000454 216 IRAACY-AIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVS 294 (1491)
Q Consensus 216 l~s~~~-~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafS 294 (1491)
+.+++| +..+..|........-++.||..+|+++.|+..|.+||+||.|+.|.|||+-...-+..++||...|+.+-|.
T Consensus 79 ~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 79 LLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred eEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 345555 4555556666568888999999999999999999999999999999999998888899999999999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC------------
Q 000454 295 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS------------ 362 (1491)
Q Consensus 295 PDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg------------ 362 (1491)
.+.++|++.+.|+.|++||+.+..+..+...|.+.|+++++.++ .+++++.|+.+++|++...
T Consensus 159 ~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~-----~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~ 233 (888)
T KOG0306|consen 159 NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEK-----LLVTAGTDSELKVWELAFEDDEKETNRYIST 233 (888)
T ss_pred CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecc-----eEEEEecCCceEEEEeeccccccccccccee
Confidence 98899999999999999999999999999999999999999993 7999999999999998210
Q ss_pred ------------Ccccee--------------------ec---------------------C--CCCCccc---------
Q 000454 363 ------------QFSPRI--------------------YI---------------------P--RPSDAVA--------- 378 (1491)
Q Consensus 363 ------------~~~~~i--------------------~~---------------------~--~~~~~~~--------- 378 (1491)
+.+... .+ . .+...+.
T Consensus 234 ~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r 313 (888)
T KOG0306|consen 234 KLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKR 313 (888)
T ss_pred eccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHH
Confidence 000000 00 0 0000000
Q ss_pred -----------------CCCC--------------------CC---------CCCCCCCCcceEEEEECCCCCEEEEecC
Q 000454 379 -----------------GRNM--------------------AP---------SSSAGPQSHQIFCCAFNANGTVFVTGSS 412 (1491)
Q Consensus 379 -----------------g~~~--------------------~~---------~~s~~~h~~~V~slafSPDG~~LasGs~ 412 (1491)
+... .. .....+|...|.+++++.+...+++|+
T Consensus 314 ~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga- 392 (888)
T KOG0306|consen 314 LETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA- 392 (888)
T ss_pred HHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-
Confidence 0000 00 122356778888888888877666664
Q ss_pred CceEEEEeCCCCCCCCCCCC-------------------------------CceeeeecCCCCCceEEEEccCccccccc
Q 000454 413 DTLARVWNACKPNTDDSDQP-------------------------------NHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1491)
Q Consensus 413 DG~IrVWDl~t~~~~~s~~~-------------------------------~~~i~~l~gH~~~V~sVafSpdg~as~~s 461 (1491)
.+.|.||+..+.++...... ...+..+.+|.+.|+.++.+|++
T Consensus 393 ~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~------ 466 (888)
T KOG0306|consen 393 GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN------ 466 (888)
T ss_pred CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC------
Confidence 56788888887655322111 12233456788999999998885
Q ss_pred cccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCC
Q 000454 462 LADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 541 (1491)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~ 541 (1491)
..+++||.|.+|++||+..-.. .+.... ..-.-...+...-..
T Consensus 467 --------------------~g~vT~saDktVkfWdf~l~~~--------------~~gt~~---k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 467 --------------------KGFVTGSADKTVKFWDFKLVVS--------------VPGTQK---KVLSLKHTRTLELED 509 (888)
T ss_pred --------------------CceEEecCCcEEEEEeEEEEec--------------cCcccc---eeeeeccceEEeccc
Confidence 6899999999999999874111 000000 000011123344567
Q ss_pred CeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 000454 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY 621 (1491)
Q Consensus 542 ~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l 621 (1491)
.|.|+.+||||++||++--|.+|+||-+.+-+..-.|.||.-+|.||..+| ++.+++|||.|..|+||-+.=|.|.+.+
T Consensus 510 dvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~ 588 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSF 588 (888)
T ss_pred cEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhh
Confidence 899999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred eeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccceeeecCCCcceEEccCCCEEEccccccCccccCCCc
Q 000454 622 EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDP 701 (1491)
Q Consensus 622 ~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~ 701 (1491)
.+|...|.++.|-|+..++++++.||.|+-||-..=+.++.+
T Consensus 589 fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L-------------------------------------- 630 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL-------------------------------------- 630 (888)
T ss_pred hcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee--------------------------------------
Confidence 999999999999999999999999999999986332211110
Q ss_pred cccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccC
Q 000454 702 LCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPL 754 (1491)
Q Consensus 702 l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~ 754 (1491)
.++...+..++.+|+|.+++++ +-|..+++|--
T Consensus 631 -----------------~~H~~ev~cLav~~~G~~vvs~---shD~sIRlwE~ 663 (888)
T KOG0306|consen 631 -----------------DGHHSEVWCLAVSPNGSFVVSS---SHDKSIRLWER 663 (888)
T ss_pred -----------------ccchheeeeeEEcCCCCeEEec---cCCceeEeeec
Confidence 1244456679999999999999 99999999966
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=315.57 Aligned_cols=311 Identities=21% Similarity=0.324 Sum_probs=279.7
Q ss_pred ccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 000454 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCI 308 (1491)
Q Consensus 229 ~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGt 308 (1491)
.+....+.+.+.||..+|+.+-|+|+-..+|++++|++|++||..+|++...++||...|.+|+|+..|++||+++.|-.
T Consensus 94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~ 173 (406)
T KOG0295|consen 94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLS 173 (406)
T ss_pred cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccc
Confidence 44566777889999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEEEECCC-CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCC
Q 000454 309 IRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1491)
Q Consensus 309 IrVWDl~t-gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s 387 (1491)
+++||..+ .+++..+.+|...|.+++|-|.+. +|++++.|.+|+.|++.++.++.++
T Consensus 174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd---~ilS~srD~tik~We~~tg~cv~t~------------------- 231 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD---HILSCSRDNTIKAWECDTGYCVKTF------------------- 231 (406)
T ss_pred hhheeHHHHHHHHHHhcCcccceeeEEEEecCC---eeeecccccceeEEecccceeEEec-------------------
Confidence 99999987 577888899999999999999987 9999999999999999999998887
Q ss_pred CCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCC
Q 000454 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1491)
Q Consensus 388 ~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1491)
.+|...|..+..+.||.++|+++.|.+|++|-+.+ ......+..|...|.+++|.|....+.
T Consensus 232 -~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t---------~~~k~~lR~hEh~vEci~wap~~~~~~-------- 293 (406)
T KOG0295|consen 232 -PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT---------KQCKAELREHEHPVECIAWAPESSYPS-------- 293 (406)
T ss_pred -cCchHhEEEEEecCCeeEEEecCCCceEEEEEecc---------chhhhhhhccccceEEEEecccccCcc--------
Confidence 45778999999999999999999999999999976 445677899999999999998641100
Q ss_pred CCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000454 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1491)
Q Consensus 468 ~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1491)
-..++++.
T Consensus 294 --------------i~~at~~~---------------------------------------------------------- 301 (406)
T KOG0295|consen 294 --------------ISEATGST---------------------------------------------------------- 301 (406)
T ss_pred --------------hhhccCCC----------------------------------------------------------
Confidence 00000000
Q ss_pred EcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcc
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR 627 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~ 627 (1491)
..+.++++++.|++|++||+.+|.++.+|.||...|..++|+| +++||+++..|++++|||+.+++++.++..|..-
T Consensus 302 --~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf 378 (406)
T KOG0295|consen 302 --NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF 378 (406)
T ss_pred --CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcce
Confidence 0467899999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 628 LVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 628 VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
|+++.|..+-.++++|+-|-.+++|.-
T Consensus 379 vt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999963
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=294.55 Aligned_cols=294 Identities=19% Similarity=0.239 Sum_probs=262.8
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEE
Q 000454 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357 (1491)
Q Consensus 278 l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIW 357 (1491)
.++|+||.+.|.++.|++|.++|++++.||.+.|||.-+...++.+.-....|..++|+|.++ ++++|+-|..+.||
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~---~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGN---FVACGGLDNKCSIY 124 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCC---eEEecCcCceeEEE
Confidence 378999999999999999999999999999999999999998998988899999999999998 99999999999999
Q ss_pred ccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceee
Q 000454 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1491)
Q Consensus 358 Dl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1491)
++.+....... .......+|.+.+.|+.|-.| ..|++++.|.++.+||+++ .+.+.
T Consensus 125 ~ls~~d~~g~~--------------~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~---------g~~~~ 180 (343)
T KOG0286|consen 125 PLSTRDAEGNV--------------RVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET---------GQQTQ 180 (343)
T ss_pred ecccccccccc--------------eeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEccc---------ceEEE
Confidence 99855211111 112234679999999999875 5688999999999999987 56788
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccC
Q 000454 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1491)
Q Consensus 438 ~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~ 517 (1491)
.+.+|.+.|.++.++|.. .+.|++|+.|+..++||++.+
T Consensus 181 ~f~GH~gDV~slsl~p~~-------------------------~ntFvSg~cD~~aklWD~R~~---------------- 219 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSD-------------------------GNTFVSGGCDKSAKLWDVRSG---------------- 219 (343)
T ss_pred EecCCcccEEEEecCCCC-------------------------CCeEEecccccceeeeeccCc----------------
Confidence 999999999999999942 379999999999999999963
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCC--CCCeEEEEEecCCC
Q 000454 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH--TESTYVLDVHPFNP 595 (1491)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH--s~~VtsLafSPdd~ 595 (1491)
...+.+.+|...|++|+|.|+|.-+++|+.|++.++||++..+.+..+... ..+|++++|+. .+
T Consensus 220 -------------~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SG 285 (343)
T KOG0286|consen 220 -------------QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SG 285 (343)
T ss_pred -------------ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cc
Confidence 456778999999999999999999999999999999999999998888632 34799999998 88
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 596 ~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
++|++|..|.++.+||.-.++.+..+.+|...|.++..+|||..|++|+.|..|+||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999999999999999999999999999999999999994
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=288.28 Aligned_cols=296 Identities=18% Similarity=0.353 Sum_probs=257.1
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC--ceeeeccCCCceEEE
Q 000454 256 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAI 333 (1491)
Q Consensus 256 ~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk--~i~~L~gHs~~VtsL 333 (1491)
-+||+++.|.+|++|...+|.|..+++...+.|..+.+.|++++||+++.- .||+||+.++. ++.++.+|+..|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 478999999999999999999999999888999999999999999999865 79999998874 689999999999999
Q ss_pred EecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCC
Q 000454 334 AFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD 413 (1491)
Q Consensus 334 aFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~D 413 (1491)
.|..+++ .+++|+.||+++|||++...+...+ .+...|+++..+|+...|++|..+
T Consensus 90 gF~~dgr---WMyTgseDgt~kIWdlR~~~~qR~~---------------------~~~spVn~vvlhpnQteLis~dqs 145 (311)
T KOG0315|consen 90 GFQCDGR---WMYTGSEDGTVKIWDLRSLSCQRNY---------------------QHNSPVNTVVLHPNQTELISGDQS 145 (311)
T ss_pred EEeecCe---EEEecCCCceEEEEeccCcccchhc---------------------cCCCCcceEEecCCcceEEeecCC
Confidence 9999998 9999999999999999986554443 256789999999999999999999
Q ss_pred ceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeE
Q 000454 414 TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSA 493 (1491)
Q Consensus 414 G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtI 493 (1491)
|.|+|||+....+... .+......|.++...|+| .+++.+...|..
T Consensus 146 g~irvWDl~~~~c~~~--------liPe~~~~i~sl~v~~dg--------------------------sml~a~nnkG~c 191 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHE--------LIPEDDTSIQSLTVMPDG--------------------------SMLAAANNKGNC 191 (311)
T ss_pred CcEEEEEccCCccccc--------cCCCCCcceeeEEEcCCC--------------------------cEEEEecCCccE
Confidence 9999999976433211 122334678899999986 689999999999
Q ss_pred EEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCC-
Q 000454 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG- 572 (1491)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg- 572 (1491)
.+|++-..... ....++.++..|...+..+.+|||+++||+++.|.+++||+..+.
T Consensus 192 yvW~l~~~~~~-----------------------s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 192 YVWRLLNHQTA-----------------------SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred EEEEccCCCcc-----------------------ccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 99998753211 112456668889999999999999999999999999999999987
Q ss_pred ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEc
Q 000454 573 SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 634 (1491)
Q Consensus 573 kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafS 634 (1491)
++-..+.+|...++..+||. ++.||+||+.|+.+++|++..++.++.+.+|..+..|++..
T Consensus 249 kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 66678899999999999999 78999999999999999999999999999999888887753
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=299.99 Aligned_cols=339 Identities=17% Similarity=0.260 Sum_probs=280.4
Q ss_pred eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000454 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 235 ~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl 314 (1491)
-+.+|..|++.|++|+.+|+.+++|||+.|....||++.+|..+..+.+|...|+++.|+.+|.+||||+.+|.|+||..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
.++.....+...-..|.=+.|+|.+. .|++|+.||.|..|.+......+.+ .+|...
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~---illAG~~DGsvWmw~ip~~~~~kv~--------------------~Gh~~~ 192 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAH---ILLAGSTDGSVWMWQIPSQALCKVM--------------------SGHNSP 192 (399)
T ss_pred ccCceEEEeecccCceEEEEeccccc---EEEeecCCCcEEEEECCCcceeeEe--------------------cCCCCC
Confidence 99998888876777888999999876 9999999999999999876444443 458889
Q ss_pred eEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCC-CCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH-~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
++|-.|.|+|+.+++|..||+|++|+..++ .++..+.+. .....++.+...+
T Consensus 193 ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg---------~p~~~~~~~e~~~~~~~~~~~~~------------------ 245 (399)
T KOG0296|consen 193 CTCGEFIPDGKRILTGYDDGTIIVWNPKTG---------QPLHKITQAEGLELPCISLNLAG------------------ 245 (399)
T ss_pred cccccccCCCceEEEEecCceEEEEecCCC---------ceeEEecccccCcCCcccccccc------------------
Confidence 999999999999999999999999999874 233333321 2334455555432
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC---CCCeeEEEEcC
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT---PRGVNMIVWSL 550 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h---~~~VtsVafSP 550 (1491)
..++.|+.++.+.+-...+++....... ........+ ...|-.+.|+.
T Consensus 246 --------~~~~~g~~e~~~~~~~~~sgKVv~~~n~---------------------~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 246 --------STLTKGNSEGVACGVNNGSGKVVNCNNG---------------------TVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred --------ceeEeccCCccEEEEccccceEEEecCC---------------------CCccccccchhhhhhhhhccccc
Confidence 4788888888888887766553211110 000001112 22355566666
Q ss_pred CCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEE
Q 000454 551 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVD 630 (1491)
Q Consensus 551 DG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~Vts 630 (1491)
.=.+.|+|+.||+|.|||+...++.+.+. |...|+.+.|-+ ..+|++++.+|.|++||.++|+++..+.+|..+|.+
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILD 373 (399)
T ss_pred ccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeE
Confidence 77789999999999999999887777665 888899999987 467778999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 631 GKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 631 lafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
++++|+++++++++.|+..+||++.
T Consensus 374 f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 374 FALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999863
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-31 Score=294.04 Aligned_cols=288 Identities=31% Similarity=0.554 Sum_probs=252.6
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000454 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~ 315 (1491)
+++|++|.+.|++++|+|++++|++++.||.|++|++.++.....+..|...+..+.|++++++|++++.+|.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 45788999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcce
Q 000454 316 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1491)
Q Consensus 316 tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V 395 (1491)
+++.+..+..|...|.++.|++++. ++++++.+|.|.+||+.+++....+ ..+...|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~--------------------~~~~~~i 138 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGR---ILSSSSRDKTIKVWDVETGKCLTTL--------------------RGHTDWV 138 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCC---EEEEecCCCeEEEEECCCcEEEEEe--------------------ccCCCcE
Confidence 9888889999999999999999965 7777777999999999876654443 1356689
Q ss_pred EEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcccc
Q 000454 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1491)
Q Consensus 396 ~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~ 475 (1491)
.+++|+|++.++++++.++.|++||+.. ...+..+..|...|.++.|+|++
T Consensus 139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~~~~~-------------------- 189 (289)
T cd00200 139 NSVAFSPDGTFVASSSQDGTIKLWDLRT---------GKCVATLTGHTGEVNSVAFSPDG-------------------- 189 (289)
T ss_pred EEEEEcCcCCEEEEEcCCCcEEEEEccc---------cccceeEecCccccceEEECCCc--------------------
Confidence 9999999999999998899999999965 33455667888899999999875
Q ss_pred ccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEE
Q 000454 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1491)
Q Consensus 476 ~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~L 555 (1491)
..+++++.+|.|++||+...+ ....+..+...+.+++|++++.++
T Consensus 190 ------~~l~~~~~~~~i~i~d~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 190 ------EKLLSSSSDGTIKLWDLSTGK-----------------------------CLGTLRGHENGVNSVAFSPDGYLL 234 (289)
T ss_pred ------CEEEEecCCCcEEEEECCCCc-----------------------------eecchhhcCCceEEEEEcCCCcEE
Confidence 578888889999999998532 122223566689999999999999
Q ss_pred EEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 556 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 556 aSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
++++.++.|++|++.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++|+
T Consensus 235 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence 9888899999999999999999999999999999999 567888999999999996
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-32 Score=294.70 Aligned_cols=294 Identities=23% Similarity=0.400 Sum_probs=254.7
Q ss_pred eeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 000454 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME-TAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 234 k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~-Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVW 312 (1491)
.++-.+.||.+.|+++.|+|+|.+||||+.|..|.+|++. .-+....+++|.+.|..+.|.+|++.|++++.|.+|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4456788999999999999999999999999999999964 446677889999999999999999999999999999999
Q ss_pred ECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 313 Dl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
|+++|+.+..+++|...|..+. |...++.++.+++.||++++||+++...++++. ..
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~---------------------~k 174 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE---------------------NK 174 (338)
T ss_pred ecccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccc---------------------cc
Confidence 9999999999999999999998 444445688999999999999999887776652 45
Q ss_pred cceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCc
Q 000454 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1491)
Q Consensus 393 ~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1491)
.+++++.|..++..+.+|+-|+.|++||++. ......+.||.+.|+.+..++.+
T Consensus 175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~---------~d~~~~lsGh~DtIt~lsls~~g----------------- 228 (338)
T KOG0265|consen 175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRK---------NDGLYTLSGHADTITGLSLSRYG----------------- 228 (338)
T ss_pred eeEEEEEecccccceeeccccCceeeecccc---------CcceEEeecccCceeeEEeccCC-----------------
Confidence 6799999999999999999999999999976 45788999999999999999986
Q ss_pred cccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC----CCeeEEEE
Q 000454 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP----RGVNMIVW 548 (1491)
Q Consensus 473 ~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~----~~VtsVaf 548 (1491)
..+++-+.|.++++||++.-. +....+..+.++. .....++|
T Consensus 229 ---------s~llsnsMd~tvrvwd~rp~~-------------------------p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 229 ---------SFLLSNSMDNTVRVWDVRPFA-------------------------PSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred ---------CccccccccceEEEEEecccC-------------------------CCCceEEEeecchhhhhhhcceeec
Confidence 689999999999999998411 0111233333332 23456899
Q ss_pred cCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 549 SPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
+|+++++.+|+.|..+++||......+..|.||.+.|.+++|+| ...+|.+++.|.+|++=.
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEeec
Confidence 99999999999999999999999899999999999999999999 667888999999998743
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=302.75 Aligned_cols=293 Identities=18% Similarity=0.334 Sum_probs=243.1
Q ss_pred eeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 000454 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCRGHEGDITDLAVSSNNALVASASNDCIIR 310 (1491)
Q Consensus 234 k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg---~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIr 310 (1491)
+..++|..|++.|+-+.||++|+||||++.|.+..||.+... ++.+++.+|..+|..|.||||.++|++|+.+..+.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 345688899999999999999999999999999999998543 45788999999999999999999999999999999
Q ss_pred EEECCCCCceeeec-cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 311 VWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 311 VWDl~tgk~i~~L~-gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
+||+.+|.....+. +|...+.+++|.||+. .+++|+.|++|..||++.... ... ..
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~---~~V~Gs~dr~i~~wdlDgn~~-~~W-------------------~g 351 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF---RFVTGSPDRTIIMWDLDGNIL-GNW-------------------EG 351 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCc---eeEecCCCCcEEEecCCcchh-hcc-------------------cc
Confidence 99999999887775 4568899999999997 899999999999999975431 111 01
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
.....|.+++..+||+++++.+.|..|++|+..+.. . ..+.....+|++++++.++
T Consensus 352 vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~---------d-r~lise~~~its~~iS~d~-------------- 407 (519)
T KOG0293|consen 352 VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV---------D-RGLISEEQPITSFSISKDG-------------- 407 (519)
T ss_pred cccceeEEEEEcCCCcEEEEEecccceeeechhhhh---------h-hccccccCceeEEEEcCCC--------------
Confidence 123459999999999999999999999999986421 1 1133456689999999875
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCC--eeEEE
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG--VNMIV 547 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~--VtsVa 547 (1491)
.++++.-.+..+.+||+...+ .+.++.+|... +-.-|
T Consensus 408 ------------k~~LvnL~~qei~LWDl~e~~-----------------------------lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 408 ------------KLALVNLQDQEIHLWDLEENK-----------------------------LVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred ------------cEEEEEcccCeeEEeecchhh-----------------------------HHHHhhcccccceEEEec
Confidence 577788889999999998533 22334444433 22334
Q ss_pred Ec-CCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000454 548 WS-LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1491)
Q Consensus 548 fS-PDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t 614 (1491)
|. .+..++++|+.|+.|+||+..+|+++.++.||...|+||+|+|.++.++|+||.||+|+||....
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 43 35589999999999999999999999999999999999999999999999999999999998753
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=308.14 Aligned_cols=491 Identities=18% Similarity=0.187 Sum_probs=328.2
Q ss_pred cccccceeEEEEccCCCCEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 000454 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGS--DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN 305 (1491)
Q Consensus 228 ~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS--~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~ 305 (1491)
....+....+.+..|..+++||||+++|+|+|||- ....++||++..-..++.|..|.-.|+|++|+|.++||++.+.
T Consensus 63 fn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGs 142 (1080)
T KOG1408|consen 63 FNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGS 142 (1080)
T ss_pred EcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeecc
Confidence 44556667778888999999999999999999984 5678999999999999999999999999999999999997655
Q ss_pred --CCeEEEEECCCCCceeeeccCCCceEEEEecCCCC-------------------------------------------
Q 000454 306 --DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG------------------------------------------- 340 (1491)
Q Consensus 306 --DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~------------------------------------------- 340 (1491)
|-.|.+||++.......-+ -...|..++|+.++.
T Consensus 143 QHDMIVnv~dWr~N~~~asnk-iss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~ 221 (1080)
T KOG1408|consen 143 QHDMIVNVNDWRVNSSGASNK-ISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFL 221 (1080)
T ss_pred ccceEEEhhhhhhcccccccc-cceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhh
Confidence 4456666653221111000 111222222222222
Q ss_pred -----------------------------------------------ceEEEEEEeCCCcEEEEccCCCCccceeecCCC
Q 000454 341 -----------------------------------------------SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373 (1491)
Q Consensus 341 -----------------------------------------------s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~ 373 (1491)
+..+|++|+.+|+|++|+..+-....++..+..
T Consensus 222 avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~ha 301 (1080)
T KOG1408|consen 222 AVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHA 301 (1080)
T ss_pred hhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccc
Confidence 001677777777777777666655554432211
Q ss_pred CCcccCCCCCC----CCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEE
Q 000454 374 SDAVAGRNMAP----SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449 (1491)
Q Consensus 374 ~~~~~g~~~~~----~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sV 449 (1491)
...-......+ .......-....++.|++....|.+...|..++|||++..+. ......+..|...|+.|
T Consensus 302 lg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~k------vgk~~s~lyHS~ciW~V 375 (1080)
T KOG1408|consen 302 LGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK------VGKCSSMLYHSACIWDV 375 (1080)
T ss_pred cccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccc------ccceeeeeeccceeeee
Confidence 11000000000 111111222345788999999999999999999999986432 23445667899999998
Q ss_pred EEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccc--cccccccCCCCCCC----
Q 000454 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR--WTQAYHLKVPPPPM---- 523 (1491)
Q Consensus 450 afSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~--~~~~~~l~~~~~~~---- 523 (1491)
...|...-. -.........|++|+.||+|++|++..... ..... ......++++....
T Consensus 376 e~~p~nv~~---------------~~~aclp~~cF~TCSsD~TIRlW~l~~ctn-n~vyrRNils~~l~ki~y~d~~~q~ 439 (1080)
T KOG1408|consen 376 ENLPCNVHS---------------PTAACLPRGCFTTCSSDGTIRLWDLAFCTN-NQVYRRNILSANLSKIPYEDSTQQI 439 (1080)
T ss_pred ccccccccC---------------cccccCCccceeEecCCCcEEEeecccccc-cceeecccchhhhhcCccccCchhh
Confidence 887742100 001111235699999999999999986211 00000 00000000000000
Q ss_pred ---CCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecC--CCcEE
Q 000454 524 ---PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPF--NPRIA 598 (1491)
Q Consensus 524 ---~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPd--d~~lL 598 (1491)
..................++.+++.||+|++||+|...|.|+||++..-+.+..+.+|...|.|+.|+-- ..++|
T Consensus 440 ~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLL 519 (1080)
T KOG1408|consen 440 MHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLL 519 (1080)
T ss_pred hhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhh
Confidence 0001111222334455667999999999999999999999999999999999999999999999999752 34799
Q ss_pred EEEeCCCcEEEEeCCCC-ceEEEEeeC-------------------------------------------------Ccce
Q 000454 599 MSAGYDGKTIVWDIWEG-IPIRIYEIS-------------------------------------------------RFRL 628 (1491)
Q Consensus 599 aSgS~DGtIrIWDl~tG-k~l~~l~~h-------------------------------------------------~~~V 628 (1491)
|+++.|..|.|||+... .++.++.+| +..+
T Consensus 520 ASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 520 ASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred hhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence 99999999999998532 122222211 2356
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccceeeecCCCcceEEccCCCEEEc-cccccCccccCCCccccccC
Q 000454 629 VDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQ-ETQLAPHRRNLQDPLCDSAM 707 (1491)
Q Consensus 629 tslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~fs~D~r~La~d~~G~vLde-~tq~~p~Lw~l~~~l~d~s~ 707 (1491)
++++..|..+++++++.|..|+||++..|+..+..+....-.++-..++.|+.|.++.. .+...--+.++..+.|...|
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence 67778899999999999999999999999988776655554455555677888877764 23333345667777776665
Q ss_pred CCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCC
Q 000454 708 IPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLA 755 (1491)
Q Consensus 708 ~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~ 755 (1491)
.. +...|.++.|.+|-+-|... +.|+-|.+|-++
T Consensus 680 ~G-----------HsE~VTG~kF~nDCkHlISv---sgDgCIFvW~lp 713 (1080)
T KOG1408|consen 680 TG-----------HSEAVTGVKFLNDCKHLISV---SGDGCIFVWKLP 713 (1080)
T ss_pred cC-----------cchheeeeeecccchhheee---cCCceEEEEECc
Confidence 44 55556679999999999988 899999999985
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-30 Score=287.75 Aligned_cols=288 Identities=26% Similarity=0.439 Sum_probs=252.5
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEE
Q 000454 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357 (1491)
Q Consensus 278 l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIW 357 (1491)
+.++.+|...|.+++|+|++++|++++.+|.|++|++.++.....+..|...+..+.|+|++. .|++++.+|.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT---YLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCC---EEEEEcCCCeEEEE
Confidence 346778999999999999999999999999999999999988888999999999999999986 89999999999999
Q ss_pred ccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceee
Q 000454 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1491)
Q Consensus 358 Dl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1491)
++.+++....+ ..+...|.++.|++++.++++++.++.|.+|++.+ .....
T Consensus 79 ~~~~~~~~~~~--------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~ 129 (289)
T cd00200 79 DLETGECVRTL--------------------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET---------GKCLT 129 (289)
T ss_pred EcCcccceEEE--------------------eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC---------cEEEE
Confidence 99877554444 23566899999999999999998899999999964 34566
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccC
Q 000454 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1491)
Q Consensus 438 ~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~ 517 (1491)
.+..|...|.++.|+|++ .++++++.+|.|++||+...+
T Consensus 130 ~~~~~~~~i~~~~~~~~~--------------------------~~l~~~~~~~~i~i~d~~~~~--------------- 168 (289)
T cd00200 130 TLRGHTDWVNSVAFSPDG--------------------------TFVASSSQDGTIKLWDLRTGK--------------- 168 (289)
T ss_pred EeccCCCcEEEEEEcCcC--------------------------CEEEEEcCCCcEEEEEccccc---------------
Confidence 677899999999999864 467777779999999987532
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcE
Q 000454 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 597 (1491)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~l 597 (1491)
....+..+...+.+++|+|+++.|++++.++.|++||+.+++.+..+..|...|.+++|+| ++.+
T Consensus 169 --------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 233 (289)
T cd00200 169 --------------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYL 233 (289)
T ss_pred --------------cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcE
Confidence 2223345666899999999999999999999999999999999999988999999999999 4788
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 598 AMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 598 LaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
+++++.||.|++|++.+++++..+..+...|.+++|+|++.+|++++.||.|.+|+
T Consensus 234 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 234 LASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 88888899999999999999999998888999999999999999999999999995
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=294.44 Aligned_cols=295 Identities=23% Similarity=0.401 Sum_probs=256.8
Q ss_pred cccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 000454 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCII 309 (1491)
Q Consensus 230 v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtI 309 (1491)
-..+++.+.+.||.+.|.||++.|-..+++||+.|++|+|||+.+|++..++.||-..|..++||+--.||++++.|+.|
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 310 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 310 rVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
+.||++..+.++.+.||-..|+|++.+|.-. .|++|+.|.+++|||+++..
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTld---vl~t~grDst~RvWDiRtr~-------------------------- 268 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD---VLVTGGRDSTIRVWDIRTRA-------------------------- 268 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccce---eEEecCCcceEEEeeecccc--------------------------
Confidence 9999999999999999999999999999765 78888888888888876432
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
.+..+.||...|..|.+.|..
T Consensus 269 ---------------------------------------------~V~~l~GH~~~V~~V~~~~~d-------------- 289 (460)
T KOG0285|consen 269 ---------------------------------------------SVHVLSGHTNPVASVMCQPTD-------------- 289 (460)
T ss_pred ---------------------------------------------eEEEecCCCCcceeEEeecCC--------------
Confidence 234556788888888877642
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 549 (1491)
..+++||.|++|++||++.++ ....+..|...|.+++.+
T Consensus 290 ------------pqvit~S~D~tvrlWDl~agk-----------------------------t~~tlt~hkksvral~lh 328 (460)
T KOG0285|consen 290 ------------PQVITGSHDSTVRLWDLRAGK-----------------------------TMITLTHHKKSVRALCLH 328 (460)
T ss_pred ------------CceEEecCCceEEEeeeccCc-----------------------------eeEeeecccceeeEEecC
Confidence 478899999999999988644 344556788889999999
Q ss_pred CCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee------
Q 000454 550 LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI------ 623 (1491)
Q Consensus 550 PDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~------ 623 (1491)
|....+|+++.| .|+-|++..|..++.+.+|...|++++... + .++++|+..|.|.+||..+|-..+.+..
T Consensus 329 P~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~ns-D-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGS 405 (460)
T KOG0285|consen 329 PKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNS-D-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGS 405 (460)
T ss_pred CchhhhhccCCc-cceeccCCccchhhccccccceeeeeeecc-C-ceEEEcCCceEEEEEecCcCcccccccccccCCc
Confidence 999999999887 699999999999999999999999999876 3 4667899999999999999876655521
Q ss_pred --CCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000454 624 --SRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 624 --h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~t 656 (1491)
....|++.+|...|..|++|..|.+|.+|.-..
T Consensus 406 l~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 406 LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 234789999999999999999999999998643
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.9e-30 Score=298.73 Aligned_cols=289 Identities=19% Similarity=0.310 Sum_probs=256.4
Q ss_pred eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000454 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 235 ~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl 314 (1491)
..++|..|+..|.||.|+|...+++++-..|.|.||+.+|..+++.+.-..-+|.+..|-+..+++++|+.|..|+||+.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 34566779999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
.+++.+..|..|...|.+|+.+|... ++++++.|-+|++||....-.... ...+|...
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P---~vLtsSDDm~iKlW~we~~wa~~q-------------------tfeGH~Hy 142 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLP---YVLTSSDDMTIKLWDWENEWACEQ-------------------TFEGHEHY 142 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCC---eEEecCCccEEEEeeccCceeeee-------------------EEcCcceE
Confidence 99999999999999999999999987 999999999999999976532222 23579999
Q ss_pred eEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 395 IFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 395 V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
|.+++|+| |.+.||+++-|++|+||.+.. ..+..++.+|...|++|.+.+.+
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs---------~~~nfTl~gHekGVN~Vdyy~~g------------------ 195 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGS---------PHPNFTLEGHEKGVNCVDYYTGG------------------ 195 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCC---------CCCceeeeccccCcceEEeccCC------------------
Confidence 99999999 678999999999999999965 34567788999999999999865
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1491)
+..+|++|+.|.+|+|||..+. .+++.+.+|...|..++|+|.-.
T Consensus 196 ------dkpylIsgaDD~tiKvWDyQtk-----------------------------~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 196 ------DKPYLISGADDLTIKVWDYQTK-----------------------------SCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred ------CcceEEecCCCceEEEeecchH-----------------------------HHHHHhhcccccceEEEecCCCc
Confidence 2469999999999999999873 35667889999999999999999
Q ss_pred EEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 000454 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIr 608 (1491)
+|++|+.||+++||+..+-++..++.-.-+.|+||+-.+ +...++.|...|.|.
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAVGFDEGSVT 294 (794)
T ss_pred EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEEeccCCcEE
Confidence 999999999999999999999888887788999999988 455566676666543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-29 Score=305.83 Aligned_cols=368 Identities=20% Similarity=0.276 Sum_probs=290.1
Q ss_pred ccccccCCCcceeeeccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 000454 206 GFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHE 285 (1491)
Q Consensus 206 ~~~~~~~~~sl~s~~~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~ 285 (1491)
++.+|+..|++.+...+..+..|++.-..++..|..|.++|..|+|+|++.++++|++|-.|+||+..+.+++.++.||-
T Consensus 14 glsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl 93 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL 93 (1202)
T ss_pred ceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCcc
Q 000454 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS 365 (1491)
Q Consensus 286 ~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~ 365 (1491)
..|..+.|++.-.+|+++|.|.+|+||++++++++.++.||...|.|.+|+|... .+++++-|.+|+|||+..-+..
T Consensus 94 DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED---lIVSaSLDQTVRVWDisGLRkk 170 (1202)
T KOG0292|consen 94 DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED---LIVSASLDQTVRVWDISGLRKK 170 (1202)
T ss_pred ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc---eEEEecccceEEEEeecchhcc
Confidence 9999999999999999999999999999999999999999999999999999876 8999999999999998643321
Q ss_pred ceeec--CCC-------CCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCcee
Q 000454 366 PRIYI--PRP-------SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1491)
Q Consensus 366 ~~i~~--~~~-------~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1491)
..-.. +.. .+...+..........+|...|+-++|+|.-.+|++|+.|..|++|.+...+ ...+
T Consensus 171 ~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-------aWEv 243 (1202)
T KOG0292|consen 171 NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-------AWEV 243 (1202)
T ss_pred CCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-------ceee
Confidence 11100 000 0001111222244567899999999999999999999999999999996432 4467
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccccc
Q 000454 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1491)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1491)
.+..+|.+.|.++-|+|.. +.+++.+.|++|+|||+..+.
T Consensus 244 DtcrgH~nnVssvlfhp~q--------------------------~lIlSnsEDksirVwDm~kRt-------------- 283 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSVLFHPHQ--------------------------DLILSNSEDKSIRVWDMTKRT-------------- 283 (1202)
T ss_pred hhhhcccCCcceEEecCcc--------------------------ceeEecCCCccEEEEeccccc--------------
Confidence 8889999999999999963 689999999999999998643
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCc
Q 000454 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1491)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~ 596 (1491)
.++.+.......+.++-+|..+++++| .|+-+.||-+..- .++.++ + ++.
T Consensus 284 ---------------~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRE----------rpa~~v--~--~n~ 333 (1202)
T KOG0292|consen 284 ---------------SVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERE----------RPAYAV--N--GNG 333 (1202)
T ss_pred ---------------ceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEccc----------CceEEE--c--CCE
Confidence 234444556778999999999988877 4555666665422 223333 2 333
Q ss_pred EEEEEeCCCcEEEEeCCCCce--EEEEeeC---CcceEEEEEcCCCCEEEEE-eC-CCcEEEEECC
Q 000454 597 IAMSAGYDGKTIVWDIWEGIP--IRIYEIS---RFRLVDGKFSPDGASIILS-DD-VGQLYILNTG 655 (1491)
Q Consensus 597 lLaSgS~DGtIrIWDl~tGk~--l~~l~~h---~~~VtslafSPDG~~LAsg-s~-DG~I~IWdl~ 655 (1491)
++..- |..|+.+|+.+.+- +..+... ..++.++.++|-...+..+ .. .|..-++.+.
T Consensus 334 LfYvk--d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ip 397 (1202)
T KOG0292|consen 334 LFYVK--DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIP 397 (1202)
T ss_pred EEEEc--cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEec
Confidence 33322 88999999988543 3334322 2478889999976655444 33 4555555553
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-31 Score=318.17 Aligned_cols=281 Identities=25% Similarity=0.396 Sum_probs=242.4
Q ss_pred eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000454 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 235 ~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl 314 (1491)
+..++..-...|+|+.|++|+..||.|-.|..|++|.+... .++.+++. .. -..+=+.+.|-.+.+-|-
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~-~~---------l~~~d~~sad~~~~~~D~ 438 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDA-SD---------LSNIDTESADVDVDMLDD 438 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccch-hh---------hccccccccchhhhhccc
Confidence 44555555678999999999999999999999999999755 33344321 11 112224445555777787
Q ss_pred CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
..+....++.+|.++|+.+.|+|+.+ +|++++.|++||+|.+.+..++-.+ .+|..+
T Consensus 439 ~~~~~~~~L~GH~GPVyg~sFsPd~r---fLlScSED~svRLWsl~t~s~~V~y--------------------~GH~~P 495 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSGPVYGCSFSPDRR---FLLSCSEDSSVRLWSLDTWSCLVIY--------------------KGHLAP 495 (707)
T ss_pred cCCceeEEeecCCCceeeeeeccccc---ceeeccCCcceeeeecccceeEEEe--------------------cCCCcc
Confidence 77777888999999999999999988 9999999999999999988765554 468999
Q ss_pred eEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccc
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1491)
|+++.|+|.|-+||+++.|++.++|.... ..+++.+.+|-..|.|+.|+|+.
T Consensus 496 VwdV~F~P~GyYFatas~D~tArLWs~d~---------~~PlRifaghlsDV~cv~FHPNs------------------- 547 (707)
T KOG0263|consen 496 VWDVQFAPRGYYFATASHDQTARLWSTDH---------NKPLRIFAGHLSDVDCVSFHPNS------------------- 547 (707)
T ss_pred eeeEEecCCceEEEecCCCceeeeeeccc---------CCchhhhcccccccceEEECCcc-------------------
Confidence 99999999999999999999999999864 56788999999999999999986
Q ss_pred cccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCE
Q 000454 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 554 (1491)
Q Consensus 475 ~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~ 554 (1491)
.++++||.|.++++||+.++ ..+..+.+|..+|.+++|||+|++
T Consensus 548 -------~Y~aTGSsD~tVRlWDv~~G-----------------------------~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 548 -------NYVATGSSDRTVRLWDVSTG-----------------------------NSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred -------cccccCCCCceEEEEEcCCC-----------------------------cEEEEecCCCCceEEEEEcCCCce
Confidence 69999999999999999873 346677899999999999999999
Q ss_pred EEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000454 555 VLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1491)
Q Consensus 555 LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t 614 (1491)
|++|+.||.|.|||+.+|+++..+.+|++.|++|.|+. ++.+||+||.|.+|++||+..
T Consensus 592 LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchh
Confidence 99999999999999999999999999999999999999 788999999999999999853
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=308.45 Aligned_cols=297 Identities=22% Similarity=0.366 Sum_probs=255.1
Q ss_pred cceeEEEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMET-AYCLASCRGHEGDITDLAVSSNNALVASASNDCII 309 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSp-DG~~LATGS~DGtIrIWDl~T-g~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtI 309 (1491)
.-+.++++.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +++++++.||..+|.+++|+.+|..+++++.|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 4467899999999999999999 899999999999999999976 89999999999999999999999999999999999
Q ss_pred EEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 310 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 310 rVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
++||+++|+++..+. -...++|+.|.|++. +.|++|+.|+.|+.||+++++.++.+ .
T Consensus 283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~~--n~fl~G~sd~ki~~wDiRs~kvvqeY--------------------d 339 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDNQ--NIFLVGGSDKKIRQWDIRSGKVVQEY--------------------D 339 (503)
T ss_pred eeeccccceEEEEEe-cCCCceeeecCCCCC--cEEEEecCCCcEEEEeccchHHHHHH--------------------H
Confidence 999999999998887 456789999999984 48999999999999999999988776 3
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
.|-+.|..+.|-++|..+++.+.|+.++||+.+.+. +.+.+... +.....++..+|.+
T Consensus 340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v------~ik~i~~~--~~hsmP~~~~~P~~-------------- 397 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV------PIKNIADP--EMHTMPCLTLHPNG-------------- 397 (503)
T ss_pred hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc------cchhhcch--hhccCcceecCCCC--------------
Confidence 477889999999999999999999999999997532 12222222 23345677778775
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC--CCeeEEE
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP--RGVNMIV 547 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~--~~VtsVa 547 (1491)
..++.-+.|+.|.++.+...- ......++.+|. +.-..+.
T Consensus 398 ------------~~~~aQs~dN~i~ifs~~~~~--------------------------r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 398 ------------KWFAAQSMDNYIAIFSTVPPF--------------------------RLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred ------------CeehhhccCceEEEEeccccc--------------------------ccCHhhhhcceeccCceeeEE
Confidence 688888999999998755311 112233445553 3456789
Q ss_pred EcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
|||||++|++|..||.+.+||..+-+++..+.+|.+++..+.|||.....+|||+.||.|++|+
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999999999999999999999999998889999999999999996
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-30 Score=303.31 Aligned_cols=479 Identities=17% Similarity=0.202 Sum_probs=337.4
Q ss_pred CCcccccceeEEEE--ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 000454 226 PSTMVQKMQNIKRV--RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA 303 (1491)
Q Consensus 226 ~~~~v~t~k~v~tL--~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASG 303 (1491)
..|++.+.+..+.| ..-...|+|+.-+++.-.||.|-.||.|+||+..++..+.++.||...|+++.|...|..||+|
T Consensus 46 n~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSG 125 (888)
T KOG0306|consen 46 NIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASG 125 (888)
T ss_pred eEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeec
Confidence 44666666433333 2344689999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCC
Q 000454 304 SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1491)
Q Consensus 304 S~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~ 383 (1491)
+.|+.|.|||+-...-+..+.||...|+.+-|..... +|++++.|+.|++||+.+..|..+..
T Consensus 126 skDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~---~lvS~sKDs~iK~WdL~tqhCf~Thv-------------- 188 (888)
T KOG0306|consen 126 SKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDS---FLVSVSKDSMIKFWDLETQHCFETHV-------------- 188 (888)
T ss_pred CCCccEEEEEeccceeeEEeecchHHHhHHhccCCCe---EEEEeccCceEEEEecccceeeeEEe--------------
Confidence 9999999999987777889999999999999998665 89999999999999999998877763
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCC---Cceee-eecCCCCCceEEEEccCccccc
Q 000454 384 PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP---NHEID-VLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 384 ~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~---~~~i~-~l~gH~~~V~sVafSpdg~as~ 459 (1491)
.|.+.++.+++.+ +.+++++.|+.+.||++........... .+... ......+....+...++
T Consensus 189 ------d~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s----- 255 (888)
T KOG0306|consen 189 ------DHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFS----- 255 (888)
T ss_pred ------cccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCc-----
Confidence 4788999999987 7899999999999999943211100000 00000 00011111111111111
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCC-----------------------------------
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH----------------------------------- 504 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~----------------------------------- 504 (1491)
..++++-+.|..+.++.+.+....
T Consensus 256 ---------------------~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~ 314 (888)
T KOG0306|consen 256 ---------------------DRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRL 314 (888)
T ss_pred ---------------------ccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHH
Confidence 112222233333333322221000
Q ss_pred ----------------------------ccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEE
Q 000454 505 ----------------------------PKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 556 (1491)
Q Consensus 505 ----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~La 556 (1491)
.....| +.+... ......+.......+.+|...|.++++|.+...++
T Consensus 315 ~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~---ysl~~s--~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~ 389 (888)
T KOG0306|consen 315 ETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEW---YSLENS--GKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLA 389 (888)
T ss_pred HheechhheeEEEEEecCCcceeEEEeecCceEE---EEeccC--CCCCccccccceeeeccchhheeEEEeecCceeee
Confidence 000000 001110 00000111122245678999999999999988777
Q ss_pred EEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCC
Q 000454 557 AAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPD 636 (1491)
Q Consensus 557 SGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPD 636 (1491)
+|+ .+.|+||+..+.++++++..- .+.+..|.| +.+++++|...|.+.|||+.+...+.++..|.+.|++++.+||
T Consensus 390 Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD 465 (888)
T KOG0306|consen 390 SGA-GESIKIWNRDTLKCIRTITCG--YILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPD 465 (888)
T ss_pred ecC-CCcEEEEEccCcceeEEeccc--cEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCC
Confidence 774 568999999999999999743 788999999 8889999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCC-----Ccc-------------cccccceeeecCCCcceEEccCCCEEEccccccCccccC
Q 000454 637 GASIILSDDVGQLYILNTGQ-----GES-------------QKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNL 698 (1491)
Q Consensus 637 G~~LAsgs~DG~I~IWdl~t-----G~~-------------~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l 698 (1491)
++.+++|+.|.+|++|++.- |.. +..-...+.++||++.|++..-...+- ++-+
T Consensus 466 ~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVk--------Vyfl 537 (888)
T KOG0306|consen 466 NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVK--------VYFL 537 (888)
T ss_pred CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEE--------EEEe
Confidence 99999999999999999831 111 011123457888888887665444321 1111
Q ss_pred CCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCcc--ccccCCcccccccccccC
Q 000454 699 QDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLD--VMIDPLPEFIDVMDWEPE 776 (1491)
Q Consensus 699 ~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~~--~lieplp~~i~~~~W~P~ 776 (1491)
-+. ..|..++ ++.+.|+.|..|||++.+++| +.|..|.+|=+.-++ .-+=.+.+.+..+.+.|+
T Consensus 538 Dtl----------KFflsLY-GHkLPV~smDIS~DSklivTg---SADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 538 DTL----------KFFLSLY-GHKLPVLSMDISPDSKLIVTG---SADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK 603 (888)
T ss_pred cce----------eeeeeec-ccccceeEEeccCCcCeEEec---cCCCceEEeccccchhhhhhhcccCceeEEEEccc
Confidence 111 1123333 588999999999999999999 999999999886443 223334455566777775
Q ss_pred CcC-CCCCCCc
Q 000454 777 NEV-QSDDNDS 786 (1491)
Q Consensus 777 ~ev-~s~d~~~ 786 (1491)
.-. ++...|.
T Consensus 604 ~~~FFt~gKD~ 614 (888)
T KOG0306|consen 604 THLFFTCGKDG 614 (888)
T ss_pred ceeEEEecCcc
Confidence 554 3544443
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=315.69 Aligned_cols=294 Identities=31% Similarity=0.516 Sum_probs=255.0
Q ss_pred eeEEEEccC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 000454 234 QNIKRVRGH-RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAVSSNNALVASASNDCIIR 310 (1491)
Q Consensus 234 k~v~tL~GH-~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~--~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIr 310 (1491)
.....+.+| ...|+|+.|+++|++|++++.++.|++|++.+++ .+..+.+|...|.+++|+|++.+|++++.|++|+
T Consensus 149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 335666665 7899999999999999999999999999998888 7888899999999999999999999999999999
Q ss_pred EEEC-CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 311 VWRL-PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 311 VWDl-~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
|||+ ..+..+.++.+|...|++++|+|+++ ++++|+.|++|+|||++++++...+ .
T Consensus 229 iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~---~i~Sgs~D~tvriWd~~~~~~~~~l--------------------~ 285 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN---LLVSGSDDGTVRIWDVRTGECVRKL--------------------K 285 (456)
T ss_pred EeeccCCCeEEEEecCCCCceEEEEecCCCC---EEEEecCCCcEEEEeccCCeEEEee--------------------e
Confidence 9999 56689999999999999999999996 8999999999999999998887776 4
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCC--ceEEEEccCccccccccccCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND--VNYVQFSGCAVASRFSLADSSK 467 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~--V~sVafSpdg~as~~s~~~~~~ 467 (1491)
.|...|.+++|+++|.+|++++.|+.|+|||+.++... ....+.++... +++++|+|++
T Consensus 286 ~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~~~~fsp~~------------ 346 (456)
T KOG0266|consen 286 GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-------CLKLLSGAENSAPVTSVQFSPNG------------ 346 (456)
T ss_pred ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-------eeecccCCCCCCceeEEEECCCC------------
Confidence 58889999999999999999999999999999874310 34455555555 9999999986
Q ss_pred CCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCC---Cee
Q 000454 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR---GVN 544 (1491)
Q Consensus 468 ~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~---~Vt 544 (1491)
.++++++.|+.+++||+...... ....+|.. .+.
T Consensus 347 --------------~~ll~~~~d~~~~~w~l~~~~~~-----------------------------~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 347 --------------KYLLSASLDRTLKLWDLRSGKSV-----------------------------GTYTGHSNLVRCIF 383 (456)
T ss_pred --------------cEEEEecCCCeEEEEEccCCcce-----------------------------eeecccCCcceeEe
Confidence 69999999999999999964421 22222322 345
Q ss_pred EEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCC-CCCeEEEEEecCCCcEEEEEe--CCCcEEEEeCC
Q 000454 545 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-TESTYVLDVHPFNPRIAMSAG--YDGKTIVWDIW 613 (1491)
Q Consensus 545 sVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH-s~~VtsLafSPdd~~lLaSgS--~DGtIrIWDl~ 613 (1491)
+..+++.|.++++|+.|+.|++|++.++..+..+.+| ...|..+.++| ...++++++ .|+.|++|...
T Consensus 384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEecCC
Confidence 5566889999999999999999999999999999999 88999999999 778888888 79999999763
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=274.85 Aligned_cols=299 Identities=21% Similarity=0.302 Sum_probs=231.9
Q ss_pred CCCccccccccccccc-CccccccCCCcceeeeccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 000454 189 HMYADQVRGLGLREIG-GGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLV 267 (1491)
Q Consensus 189 ~~h~d~V~~l~~r~~G-g~~~~~~~~~sl~s~~~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtI 267 (1491)
.+|.+.|..++....+ ..+...+++..+...... ..+...+.+++.|.||...|..++.++||.+.++++.|+++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~----~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLT----SDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEec----cCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 4577777777665442 222333333333322211 12445577899999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccC--CCceEEEEecCCCCceEEE
Q 000454 268 KIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGH--TAAVTAIAFSPRPGSVYQL 345 (1491)
Q Consensus 268 rIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gH--s~~VtsLaFSPdg~s~~~L 345 (1491)
++||+.+|+..+.|.||...|.+++|++|++.|++|+.|.+|++|++... +..++..+ ...|.|+.|+|.... .+|
T Consensus 88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~-p~I 165 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESN-PII 165 (315)
T ss_pred EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCC-cEE
Confidence 99999999999999999999999999999999999999999999998644 44444333 789999999999533 399
Q ss_pred EEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCC
Q 000454 346 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPN 425 (1491)
Q Consensus 346 aSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~ 425 (1491)
++++.|++|++||+++.+....+ .+|.+.++.+++||||.+.++|+.||.+.+||++.+
T Consensus 166 vs~s~DktvKvWnl~~~~l~~~~--------------------~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~- 224 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRTTF--------------------IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG- 224 (315)
T ss_pred EEccCCceEEEEccCCcchhhcc--------------------ccccccEEEEEECCCCCEEecCCCCceEEEEEccCC-
Confidence 99999999999999987765554 458999999999999999999999999999999753
Q ss_pred CCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCc
Q 000454 426 TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHP 505 (1491)
Q Consensus 426 ~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~ 505 (1491)
+.+ ....|...|.+++|+|+. +.++...+..|+|||+.+.....
T Consensus 225 --------k~l-ysl~a~~~v~sl~fspnr---------------------------ywL~~at~~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 225 --------KNL-YSLEAFDIVNSLCFSPNR---------------------------YWLCAATATSIKIWDLESKAVVE 268 (315)
T ss_pred --------cee-EeccCCCeEeeEEecCCc---------------------------eeEeeccCCceEEEeccchhhhh
Confidence 233 335678899999999974 66777777789999999755321
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECC
Q 000454 506 KAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA 570 (1491)
Q Consensus 506 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~ 570 (1491)
. +.++.. ++ ..........+++|++||..|++|..|+.|++|.+.
T Consensus 269 ~-------l~~d~~-----------g~--s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 269 E-------LKLDGI-----------GP--SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred h-------cccccc-----------cc--ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 1 111100 00 111223345678999999999999999999999874
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=291.34 Aligned_cols=288 Identities=17% Similarity=0.312 Sum_probs=253.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeee
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L 323 (1491)
..|++++|+.+|..||+|+.||.++||+.. |.++.+|..|.++|.+|.|+..|+||++++.|+++.|||..+|.....+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 479999999999999999999999999975 8889999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCC
Q 000454 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1491)
Q Consensus 324 ~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPD 403 (1491)
.-|..+-..|.|-.+. .|++++.||.|+|+.+.....+.++ .+|.+.|.++.|+|.
T Consensus 315 ~~~s~~~lDVdW~~~~----~F~ts~td~~i~V~kv~~~~P~~t~--------------------~GH~g~V~alk~n~t 370 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSND----EFATSSTDGCIHVCKVGEDRPVKTF--------------------IGHHGEVNALKWNPT 370 (524)
T ss_pred eeccCCccceEEecCc----eEeecCCCceEEEEEecCCCcceee--------------------ecccCceEEEEECCC
Confidence 9999888889998876 5999999999999999877666555 459999999999999
Q ss_pred CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCe
Q 000454 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1491)
Q Consensus 404 G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~ 483 (1491)
|.+|++++.|++++||.+.. ......+.+|...|..+.|+|.+... .....+..
T Consensus 371 g~LLaS~SdD~TlkiWs~~~---------~~~~~~l~~Hskei~t~~wsp~g~v~-----------------~n~~~~~~ 424 (524)
T KOG0273|consen 371 GSLLASCSDDGTLKIWSMGQ---------SNSVHDLQAHSKEIYTIKWSPTGPVT-----------------SNPNMNLM 424 (524)
T ss_pred CceEEEecCCCeeEeeecCC---------CcchhhhhhhccceeeEeecCCCCcc-----------------CCCcCCce
Confidence 99999999999999999854 34567788999999999999987221 11122458
Q ss_pred EEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccce
Q 000454 484 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR 563 (1491)
Q Consensus 484 LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~ 563 (1491)
+++++.|++|++||+..+ .++..+..|..+|.+++|||+|+++|+|+.||.
T Consensus 425 l~sas~dstV~lwdv~~g-----------------------------v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 425 LASASFDSTVKLWDVESG-----------------------------VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC 475 (524)
T ss_pred EEEeecCCeEEEEEccCC-----------------------------ceeEeeccCCCceEEEEecCCCcEEEecCCCCe
Confidence 999999999999999863 456678889999999999999999999999999
Q ss_pred EEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 564 ICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 564 IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
|.||++.++++++.+.+- +.|..|+|+-.+ ..|..+-.||.+++-|+.
T Consensus 476 V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G-~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 476 VHIWSTKTGKLVKSYQGT-GGIFELCWNAAG-DKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEeccccchheeEeecCC-CeEEEEEEcCCC-CEEEEEecCCCceEEEec
Confidence 999999999999998764 559999999855 666667779999998874
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=270.52 Aligned_cols=295 Identities=15% Similarity=0.268 Sum_probs=257.0
Q ss_pred ceeeeccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCeEEEEE
Q 000454 216 IRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAV 293 (1491)
Q Consensus 216 l~s~~~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~--~l~tL~gH~~~VtsLaf 293 (1491)
|.+++|+..+..|...++.+.++++...+.|+.+.+.||+++||+|+. -.|++||+.++. ++.++.+|...|+++.|
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence 566678888888999999999999988899999999999999999876 569999998875 58899999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCC
Q 000454 294 SSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373 (1491)
Q Consensus 294 SPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~ 373 (1491)
..+|+++++|+.||+++|||++...+-+.+. |..+|+++..+|+.. .|+++..+|.|++||+....+...+.
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt---eLis~dqsg~irvWDl~~~~c~~~li---- 163 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT---ELISGDQSGNIRVWDLGENSCTHELI---- 163 (311)
T ss_pred eecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc---eEEeecCCCcEEEEEccCCccccccC----
Confidence 9999999999999999999999876666665 779999999999977 89999999999999999876655542
Q ss_pred CCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEcc
Q 000454 374 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 453 (1491)
Q Consensus 374 ~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSp 453 (1491)
......|.++...|||.+|+.+...|..++|++-... ...+..++..+..|.+-+....++|
T Consensus 164 ---------------Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~---~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 164 ---------------PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ---TASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred ---------------CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC---ccccceEhhheecccceEEEEEECC
Confidence 1134568999999999999999999999999996632 2334566778999999999999999
Q ss_pred CccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000454 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1491)
Q Consensus 454 dg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (1491)
++ .+|+++|.|.+++||+..+. ....
T Consensus 226 d~--------------------------k~lat~ssdktv~iwn~~~~----------------------------~kle 251 (311)
T KOG0315|consen 226 DV--------------------------KYLATCSSDKTVKIWNTDDF----------------------------FKLE 251 (311)
T ss_pred CC--------------------------cEEEeecCCceEEEEecCCc----------------------------eeeE
Confidence 86 79999999999999988752 0223
Q ss_pred eeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEe
Q 000454 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 591 (1491)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafS 591 (1491)
..+.+|...+..++||.||+||++|+.|+.+++|++..++.+..+.||.....|++..
T Consensus 252 ~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 252 LVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 4567888999999999999999999999999999999999999999999887777653
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=269.87 Aligned_cols=294 Identities=22% Similarity=0.383 Sum_probs=247.5
Q ss_pred ceeEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCC---CeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCC
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSMET---AYCLASCR-GHEGDITDLAVSSNNALVASASNDC 307 (1491)
Q Consensus 233 ~k~v~tL~GH~~~Vt~VaFSpD-G~~LATGS~DGtIrIWDl~T---g~~l~tL~-gH~~~VtsLafSPDG~lLASGS~DG 307 (1491)
+-.++++.||.+.|..++|+|- |..||||+.|..|+||++.. ..+...+. +|+..|.+++|+|.|++||+|+.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567899999999999999998 99999999999999999984 34454443 7999999999999999999999999
Q ss_pred eEEEEECCCC--CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCC
Q 000454 308 IIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1491)
Q Consensus 308 tIrVWDl~tg--k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~ 385 (1491)
++.||.-..+ +++.++.||...|.+++|+++|. +||+++.|..|-||.+..+......
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~---~LATCSRDKSVWiWe~deddEfec~----------------- 143 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN---YLATCSRDKSVWIWEIDEDDEFECI----------------- 143 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC---EEEEeeCCCeEEEEEecCCCcEEEE-----------------
Confidence 9999986544 78899999999999999999998 9999999999999998754432222
Q ss_pred CCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccC
Q 000454 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 386 ~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
....+|...|..+.|+|...+|++++.|.+|++|.-.. .........+.+|...|.+++|.+.|
T Consensus 144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~------dddW~c~~tl~g~~~TVW~~~F~~~G---------- 207 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED------DDDWECVQTLDGHENTVWSLAFDNIG---------- 207 (312)
T ss_pred eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC------CCCeeEEEEecCccceEEEEEecCCC----------
Confidence 23466899999999999999999999999999998752 23477899999999999999999986
Q ss_pred CCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1491)
..|++++.|++++||-..+. ....|...+..
T Consensus 208 ----------------~rl~s~sdD~tv~Iw~~~~~---------------------------------~~~~~sr~~Y~ 238 (312)
T KOG0645|consen 208 ----------------SRLVSCSDDGTVSIWRLYTD---------------------------------LSGMHSRALYD 238 (312)
T ss_pred ----------------ceEEEecCCcceEeeeeccC---------------------------------cchhcccceEe
Confidence 69999999999999964420 01235677888
Q ss_pred EEEcCCCCEEEEEeccceEEEEECCCC------ceEE-EEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 546 IVWSLDNRFVLAAIMDCRICVWNAADG------SLVH-SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 546 VafSPDG~~LaSGs~DG~IrIWDl~tg------kll~-tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
++|. ...|++++.|+.|+||-.... +++. .-..|...|++|+|.|....+|++|+.||.|++|.+.
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9998 558999999999999976542 1121 3356888999999999657889999999999999874
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-31 Score=296.18 Aligned_cols=284 Identities=18% Similarity=0.271 Sum_probs=251.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCC
Q 000454 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~ 363 (1491)
-...|..|.|.|+|+.|++|+..|.+.+|+..+......++.|..+|.++.|++++. ++++|+.+|.|++|+..-..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~---wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGT---WMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCC---EEEEcCCCceEEecccchhh
Confidence 456899999999999999999999999999866666666789999999999999998 99999999999999986443
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCC
Q 000454 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1491)
Q Consensus 364 ~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1491)
.. .+ ...|...|.+++|+|+...|++++.||+|+|||... .+.-..+.+|.
T Consensus 172 Vk-~~-------------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~---------~kee~vL~GHg 222 (464)
T KOG0284|consen 172 VK-II-------------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM---------PKEERVLRGHG 222 (464)
T ss_pred hH-Hh-------------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC---------CchhheeccCC
Confidence 21 11 123558899999999999999999999999999975 33456679999
Q ss_pred CCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCC
Q 000454 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1491)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~ 523 (1491)
-.|.+++|+|.. ..|++|+.|..|++||.+++.
T Consensus 223 wdVksvdWHP~k--------------------------gLiasgskDnlVKlWDprSg~--------------------- 255 (464)
T KOG0284|consen 223 WDVKSVDWHPTK--------------------------GLIASGSKDNLVKLWDPRSGS--------------------- 255 (464)
T ss_pred CCcceeccCCcc--------------------------ceeEEccCCceeEeecCCCcc---------------------
Confidence 999999999974 689999999999999999743
Q ss_pred CCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC
Q 000454 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 603 (1491)
Q Consensus 524 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~ 603 (1491)
++..+..|...|..+.|++++.+|++++.|..++++|+++.+.+.++++|...|++++|||-...+|++|+.
T Consensus 256 --------cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 256 --------CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred --------hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccC
Confidence 556677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCceEEEEe-eCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 604 DGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 604 DGtIrIWDl~tGk~l~~l~-~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
||.|..|.+...+++..+. +|...|++++|+|=|..|++|+.|.++++|.-
T Consensus 328 Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 328 DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 9999999998666665553 57779999999999999999999999999975
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=281.44 Aligned_cols=309 Identities=20% Similarity=0.314 Sum_probs=262.5
Q ss_pred CcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 000454 227 STMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND 306 (1491)
Q Consensus 227 ~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D 306 (1491)
.|...+...+..+.||...|+|+.|+.||.+||||.-+|.|+||...++.....+..-...|.-|.|+|-+..|++|+.|
T Consensus 90 lW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~D 169 (399)
T KOG0296|consen 90 LWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTD 169 (399)
T ss_pred EEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCC
Confidence 46667777889999999999999999999999999999999999999999999987777889999999999999999999
Q ss_pred CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
|.|.+|.+.++...+.+.||..++++-.|.|+|+ .++++..||+|++|++.+++....+..
T Consensus 170 GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK---r~~tgy~dgti~~Wn~ktg~p~~~~~~---------------- 230 (399)
T KOG0296|consen 170 GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK---RILTGYDDGTIIVWNPKTGQPLHKITQ---------------- 230 (399)
T ss_pred CcEEEEECCCcceeeEecCCCCCcccccccCCCc---eEEEEecCceEEEEecCCCceeEEecc----------------
Confidence 9999999999888999999999999999999998 999999999999999999987666521
Q ss_pred CCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCC
Q 000454 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466 (1491)
Q Consensus 387 s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~ 466 (1491)
.......++.++..+..++.|..++.+++-+..+++......+ ........+...+.+|.+.|....
T Consensus 231 ---~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~-~~~~l~~~~e~~~esve~~~~ss~--------- 297 (399)
T KOG0296|consen 231 ---AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG-TVPELKPSQEELDESVESIPSSSK--------- 297 (399)
T ss_pred ---cccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC-CCccccccchhhhhhhhhcccccc---------
Confidence 1244567889999999999999999999888876544322221 112223355666666666654210
Q ss_pred CCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEE
Q 000454 467 KEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI 546 (1491)
Q Consensus 467 ~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsV 546 (1491)
-.++++|+.||+|.|||+...+ .+....|..+|+.+
T Consensus 298 --------------lpL~A~G~vdG~i~iyD~a~~~------------------------------~R~~c~he~~V~~l 333 (399)
T KOG0296|consen 298 --------------LPLAACGSVDGTIAIYDLAAST------------------------------LRHICEHEDGVTKL 333 (399)
T ss_pred --------------cchhhcccccceEEEEecccch------------------------------hheeccCCCceEEE
Confidence 1478999999999999998632 34456688889999
Q ss_pred EEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 547 afSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
.|-+ ..+|++++.+|.|++||.++|+++.++.||...|.+++++| +.++++|+|.|++.+||++.
T Consensus 334 ~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 334 KWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 9998 78999999999999999999999999999999999999999 78899999999999999874
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=294.62 Aligned_cols=282 Identities=21% Similarity=0.366 Sum_probs=245.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCcee
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~ 321 (1491)
-...|..|.|.|+|++|++|+..|.+.+|+..+......+..|..+|.++.|+++|.++++|+.+|.|++|+.. ...+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhH
Confidence 34689999999999999999999999999986555455567899999999999999999999999999999964 34455
Q ss_pred eeccCC-CceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEE
Q 000454 322 VLRGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1491)
Q Consensus 322 ~L~gHs-~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slaf 400 (1491)
.+.+|. ..|++++|+|... .|++++.||+|+|||....+....+ .+|...|.|++|
T Consensus 174 ~~~ahh~eaIRdlafSpnDs---kF~t~SdDg~ikiWdf~~~kee~vL--------------------~GHgwdVksvdW 230 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS---KFLTCSDDGTIKIWDFRMPKEERVL--------------------RGHGWDVKSVDW 230 (464)
T ss_pred HhhHhhhhhhheeccCCCCc---eeEEecCCCeEEEEeccCCchhhee--------------------ccCCCCcceecc
Confidence 555554 8999999999876 8999999999999998766544333 568999999999
Q ss_pred CCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccC
Q 000454 401 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480 (1491)
Q Consensus 401 SPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~ 480 (1491)
+|...+||+|+.|..|++||.++ ..++..+.+|...|..+.|.+++
T Consensus 231 HP~kgLiasgskDnlVKlWDprS---------g~cl~tlh~HKntVl~~~f~~n~------------------------- 276 (464)
T KOG0284|consen 231 HPTKGLIASGSKDNLVKLWDPRS---------GSCLATLHGHKNTVLAVKFNPNG------------------------- 276 (464)
T ss_pred CCccceeEEccCCceeEeecCCC---------cchhhhhhhccceEEEEEEcCCC-------------------------
Confidence 99999999999999999999987 56788899999999999999986
Q ss_pred CCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC-CEEEEEe
Q 000454 481 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAAI 559 (1491)
Q Consensus 481 ~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG-~~LaSGs 559 (1491)
++|+++|.|..++++|+++. ..+..+.+|...|++++|+|-. .+|.+|+
T Consensus 277 -N~Llt~skD~~~kv~DiR~m-----------------------------kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 277 -NWLLTGSKDQSCKVFDIRTM-----------------------------KELFTYRGHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred -CeeEEccCCceEEEEehhHh-----------------------------HHHHHhhcchhhheeeccccccccceeecc
Confidence 79999999999999999952 2355677899999999999954 5677899
Q ss_pred ccceEEEEECCCCceEEEE-eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 560 MDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 560 ~DG~IrIWDl~tgkll~tL-~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
.||.|..|.+...+++..+ .+|...|++++|+| =+.+|++|+.|.++++|.-
T Consensus 327 ~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 327 SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecCCCcceeeecc
Confidence 9999999999865665554 58999999999999 7799999999999999975
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=310.53 Aligned_cols=281 Identities=20% Similarity=0.311 Sum_probs=238.1
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000454 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 277 ~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrI 356 (1491)
++.++..-...++|..|++|+.+||.|..|..|++|.+... .+..+++ ..+-. .+=+.+.|-.+.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~-------~~~l~------~~d~~sad~~~~~ 435 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKD-------ASDLS------NIDTESADVDVDM 435 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccc-------hhhhc------cccccccchhhhh
Confidence 34445445667999999999999999999999999998644 3333331 11211 1223333433555
Q ss_pred EccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCcee
Q 000454 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1491)
Q Consensus 357 WDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1491)
.|-........ ..+|.++|..+.|+|+.++|++++.|++||+|.+.+ ...+
T Consensus 436 ~D~~~~~~~~~--------------------L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t---------~s~~ 486 (707)
T KOG0263|consen 436 LDDDSSGTSRT--------------------LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT---------WSCL 486 (707)
T ss_pred ccccCCceeEE--------------------eecCCCceeeeeecccccceeeccCCcceeeeeccc---------ceeE
Confidence 55544433332 256999999999999999999999999999999976 5677
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccccc
Q 000454 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1491)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1491)
....||..+|+.++|+|.| -+|||+|.|++.++|....
T Consensus 487 V~y~GH~~PVwdV~F~P~G--------------------------yYFatas~D~tArLWs~d~---------------- 524 (707)
T KOG0263|consen 487 VIYKGHLAPVWDVQFAPRG--------------------------YYFATASHDQTARLWSTDH---------------- 524 (707)
T ss_pred EEecCCCcceeeEEecCCc--------------------------eEEEecCCCceeeeeeccc----------------
Confidence 8889999999999999987 4899999999999997764
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCc
Q 000454 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1491)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~ 596 (1491)
..+...+.+|...|.|+.|+|+..|+++|+.|.+|++||+.+|..++.|.||.++|.+|+|+| +++
T Consensus 525 -------------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr 590 (707)
T KOG0263|consen 525 -------------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGR 590 (707)
T ss_pred -------------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCc
Confidence 246677889999999999999999999999999999999999999999999999999999999 899
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000454 597 IAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 597 lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~t 656 (1491)
+|++|+.||.|.|||+.+|.++..+.+|.+.|.++.||.||..||+|+.|..|++||+..
T Consensus 591 ~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 591 YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999999999999999999999999999999999999999999854
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-31 Score=289.91 Aligned_cols=275 Identities=27% Similarity=0.482 Sum_probs=236.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCcee
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~ 321 (1491)
....|+|+.+. ...+++|..|.+|+|||..+..++..+.||++.|.|+.|. .+.|++|+.|.+|+|||+++|+++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 45689999996 4479999999999999999999999999999999999985 6699999999999999999999999
Q ss_pred eeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEEC
Q 000454 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1491)
Q Consensus 322 ~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafS 401 (1491)
++-+|...|..+.|+.. ++++++.|.+|.+||+.....
T Consensus 272 tlihHceaVLhlrf~ng-----~mvtcSkDrsiaVWdm~sps~------------------------------------- 309 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNG-----YMVTCSKDRSIAVWDMASPTD------------------------------------- 309 (499)
T ss_pred HHhhhcceeEEEEEeCC-----EEEEecCCceeEEEeccCchH-------------------------------------
Confidence 99999999999999875 899999999999999853220
Q ss_pred CCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCC
Q 000454 402 ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1491)
Q Consensus 402 PDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~ 481 (1491)
......+.||...|+.+.|+.
T Consensus 310 -------------------------------it~rrVLvGHrAaVNvVdfd~---------------------------- 330 (499)
T KOG0281|consen 310 -------------------------------ITLRRVLVGHRAAVNVVDFDD---------------------------- 330 (499)
T ss_pred -------------------------------HHHHHHHhhhhhheeeecccc----------------------------
Confidence 123455678888888888873
Q ss_pred CeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc
Q 000454 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561 (1491)
Q Consensus 482 ~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D 561 (1491)
.++++++.|.+|++|++.+.. .+..+.+|..+|.|+.+ .|+++++|+.|
T Consensus 331 kyIVsASgDRTikvW~~st~e-----------------------------fvRtl~gHkRGIAClQY--r~rlvVSGSSD 379 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCE-----------------------------FVRTLNGHKRGIACLQY--RDRLVVSGSSD 379 (499)
T ss_pred ceEEEecCCceEEEEecccee-----------------------------eehhhhcccccceehhc--cCeEEEecCCC
Confidence 488899999999999888633 34556778888888775 68999999999
Q ss_pred ceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc---------eEEEEeeCCcceEEEE
Q 000454 562 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI---------PIRIYEISRFRLVDGK 632 (1491)
Q Consensus 562 G~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk---------~l~~l~~h~~~Vtsla 632 (1491)
.+|++||+..|.+++.+.||..-|.+|.| +..-+++|++||+|+|||+..+. ++..+..|.+.|..+.
T Consensus 380 ntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ 456 (499)
T KOG0281|consen 380 NTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ 456 (499)
T ss_pred ceEEEEeccccHHHHHHhchHHhhhheee---cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence 99999999999999999999999999999 45777899999999999998763 4455666888999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 633 FSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 633 fSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
| |...|++++.|.+|.|||+-.+
T Consensus 457 F--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 457 F--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred e--cceEEEeccCCCeEEEEEcCCC
Confidence 9 5678999999999999999766
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=266.28 Aligned_cols=288 Identities=24% Similarity=0.379 Sum_probs=238.4
Q ss_pred eeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000454 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1491)
Q Consensus 234 k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWD 313 (1491)
+.++.|.+|.++|.++.|+-||+|.+|++.|.+|++|+...|.+++++.+|...|.+++.+.|+..+++|+.|..|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCc
Q 000454 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1491)
Q Consensus 314 l~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1491)
+.+|+.++.+.+|.+.|+.++|..+.. .+++|+.|.+|++||.+.....+.
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesS---Vv~SgsfD~s~r~wDCRS~s~ePi-------------------------- 138 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESS---VVASGSFDSSVRLWDCRSRSFEPI-------------------------- 138 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcce---EEEeccccceeEEEEcccCCCCcc--------------------------
Confidence 999999999999999999999999887 899999999999999875442211
Q ss_pred ceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 394 ~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
+.+......|.+|.+..
T Consensus 139 -------------------------------------------Qildea~D~V~Si~v~~-------------------- 155 (307)
T KOG0316|consen 139 -------------------------------------------QILDEAKDGVSSIDVAE-------------------- 155 (307)
T ss_pred -------------------------------------------chhhhhcCceeEEEecc--------------------
Confidence 11111223344444432
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1491)
..|++|+.||+++.||++.++.. ..-...+|++++|++||+
T Consensus 156 --------heIvaGS~DGtvRtydiR~G~l~-------------------------------sDy~g~pit~vs~s~d~n 196 (307)
T KOG0316|consen 156 --------HEIVAGSVDGTVRTYDIRKGTLS-------------------------------SDYFGHPITSVSFSKDGN 196 (307)
T ss_pred --------cEEEeeccCCcEEEEEeecceee-------------------------------hhhcCCcceeEEecCCCC
Confidence 36777777777777777754311 011235799999999999
Q ss_pred EEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEec-CCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcc-eEEE
Q 000454 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP-FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR-LVDG 631 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSP-dd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~-Vtsl 631 (1491)
.+++++.|++|++.|-.+|++++.++||...-+.+..+- .....+++|+.||.|++||+.++..+..+..+... |+++
T Consensus 197 c~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl 276 (307)
T KOG0316|consen 197 CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDL 276 (307)
T ss_pred EEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEee
Confidence 999999999999999999999999999998766554332 14578889999999999999999999999877776 8899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEE
Q 000454 632 KFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 632 afSPDG~~LAsgs~DG~I~IWd 653 (1491)
.+.|.-..|+++...+ +.+|-
T Consensus 277 ~~hp~~~~f~~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 277 SCHPTMDDFITATGHG-DLFWY 297 (307)
T ss_pred ecccCccceeEecCCc-eecee
Confidence 9999988787776644 45553
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-28 Score=319.69 Aligned_cols=290 Identities=20% Similarity=0.323 Sum_probs=237.2
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----e----EEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeE
Q 000454 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA----Y----CLASCRGHEGDITDLAVSS-NNALVASASNDCII 309 (1491)
Q Consensus 239 L~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg----~----~l~tL~gH~~~VtsLafSP-DG~lLASGS~DGtI 309 (1491)
+.+|.+.|++++|+|+|++||||+.|+.|+||++.+. . ....+. +...|.+++|++ ++.+||+++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4469999999999999999999999999999997532 1 223333 356899999987 47899999999999
Q ss_pred EEEECCCCCceeeeccCCCceEEEEecC-CCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCC
Q 000454 310 RVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1491)
Q Consensus 310 rVWDl~tgk~i~~L~gHs~~VtsLaFSP-dg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~ 388 (1491)
+|||+.+++.+..+.+|.+.|++++|+| ++. +|++|+.||+|++||+.++..+..+.
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~---~L~Sgs~Dg~v~iWd~~~~~~~~~~~------------------- 615 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPT---LLASGSDDGSVKLWSINQGVSIGTIK------------------- 615 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCC---EEEEEcCCCEEEEEECCCCcEEEEEe-------------------
Confidence 9999999999999999999999999997 555 89999999999999999887655542
Q ss_pred CCCCcceEEEEEC-CCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCC
Q 000454 389 GPQSHQIFCCAFN-ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1491)
Q Consensus 389 ~~h~~~V~slafS-PDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1491)
....|.++.|+ ++|.+|++|+.||.|++||++... ..+..+.+|...|.++.|.+.
T Consensus 616 --~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~--------~~~~~~~~h~~~V~~v~f~~~------------- 672 (793)
T PLN00181 616 --TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK--------LPLCTMIGHSKTVSYVRFVDS------------- 672 (793)
T ss_pred --cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC--------ccceEecCCCCCEEEEEEeCC-------------
Confidence 22458899995 579999999999999999997531 234567799999999999742
Q ss_pred CCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000454 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1491)
Q Consensus 468 ~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1491)
..|++++.|++|++||+..... .....++..+.+|...+.+++
T Consensus 673 --------------~~lvs~s~D~~ikiWd~~~~~~-----------------------~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 673 --------------STLVSSSTDNTLKLWDLSMSIS-----------------------GINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred --------------CEEEEEECCCEEEEEeCCCCcc-----------------------ccCCcceEEEcCCCCCeeEEE
Confidence 4899999999999999874210 001234456677888899999
Q ss_pred EcCCCCEEEEEeccceEEEEECCCCceEEEE-------------eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSL-------------TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL-------------~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
|++++.+|++|+.|+.|+||+.....++..+ ..|...|.+++|+| ++.+|++|+.||.|+||++
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 9999999999999999999998766544322 23456799999999 6678889999999999996
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-28 Score=318.54 Aligned_cols=303 Identities=15% Similarity=0.284 Sum_probs=245.4
Q ss_pred CCeEEEEECCCCeEEEEEe-----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----C----ceeeeccCCCce
Q 000454 264 DRLVKIWSMETAYCLASCR-----GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG----L----PISVLRGHTAAV 330 (1491)
Q Consensus 264 DGtIrIWDl~Tg~~l~tL~-----gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg----k----~i~~L~gHs~~V 330 (1491)
+|.+++|+..+......+. .|.+.|.+++|+|+|++||+|+.|+.|+||++... . ++..+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 6789999988776655443 58999999999999999999999999999997542 1 222333 34679
Q ss_pred EEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEE
Q 000454 331 TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVT 409 (1491)
Q Consensus 331 tsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG~~Las 409 (1491)
.+++|++... .+|++++.||+|++||+.+++.+..+ ..|...|++++|+| ++.+|++
T Consensus 536 ~~l~~~~~~~--~~las~~~Dg~v~lWd~~~~~~~~~~--------------------~~H~~~V~~l~~~p~~~~~L~S 593 (793)
T PLN00181 536 SGICWNSYIK--SQVASSNFEGVVQVWDVARSQLVTEM--------------------KEHEKRVWSIDYSSADPTLLAS 593 (793)
T ss_pred eeEEeccCCC--CEEEEEeCCCeEEEEECCCCeEEEEe--------------------cCCCCCEEEEEEcCCCCCEEEE
Confidence 9999998633 28999999999999999887655444 34788899999997 7899999
Q ss_pred ecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeC
Q 000454 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR 489 (1491)
Q Consensus 410 Gs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~ 489 (1491)
|+.||.|++||+.++ ..+..+..+ ..|.++.|.+.. +..|++|+.
T Consensus 594 gs~Dg~v~iWd~~~~---------~~~~~~~~~-~~v~~v~~~~~~-------------------------g~~latgs~ 638 (793)
T PLN00181 594 GSDDGSVKLWSINQG---------VSIGTIKTK-ANICCVQFPSES-------------------------GRSLAFGSA 638 (793)
T ss_pred EcCCCEEEEEECCCC---------cEEEEEecC-CCeEEEEEeCCC-------------------------CCEEEEEeC
Confidence 999999999999753 344445444 578899986432 368999999
Q ss_pred CCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEEC
Q 000454 490 DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1491)
Q Consensus 490 DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl 569 (1491)
||.|++||++..+ .+...+.+|...|.++.|. ++.+|++++.|+.|+|||+
T Consensus 639 dg~I~iwD~~~~~----------------------------~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 639 DHKVYYYDLRNPK----------------------------LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred CCeEEEEECCCCC----------------------------ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeC
Confidence 9999999987522 1233455788899999997 7889999999999999999
Q ss_pred CC------CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-------------eCCcceEE
Q 000454 570 AD------GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE-------------ISRFRLVD 630 (1491)
Q Consensus 570 ~t------gkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~-------------~h~~~Vts 630 (1491)
.. +.++..+.+|...+.+++|+| ++.+|++|+.|+.|+||+.....++..+. .+...|.+
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 74 367889999999999999999 56799999999999999987766554332 12346899
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 631 GKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 631 lafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
++|+|++.+|++|+.+|.|+||++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999986
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=288.47 Aligned_cols=294 Identities=18% Similarity=0.260 Sum_probs=264.9
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEc
Q 000454 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358 (1491)
Q Consensus 279 ~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWD 358 (1491)
+++..++..|.+|.|+|...+++++-.+|.|.||+.++...+..+.-..-+|.+..|-+..+ .+++|+.|..|+||+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRkn---Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKN---WIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccc---eEEEecCCceEEEEe
Confidence 34556889999999999999999999999999999999999999998889999999999876 999999999999999
Q ss_pred cCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeee
Q 000454 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 438 (1491)
Q Consensus 359 l~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~ 438 (1491)
..+++.+..+ ..|...|.|++.+|.-.++++++.|-.|++|+... .+.+...
T Consensus 84 ynt~ekV~~F--------------------eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~--------~wa~~qt 135 (794)
T KOG0276|consen 84 YNTGEKVKTF--------------------EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN--------EWACEQT 135 (794)
T ss_pred cccceeeEEe--------------------eccccceeeeeecCCCCeEEecCCccEEEEeeccC--------ceeeeeE
Confidence 9999887776 34899999999999999999999999999999965 3778899
Q ss_pred ecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCC
Q 000454 439 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKV 518 (1491)
Q Consensus 439 l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~ 518 (1491)
+.||..-|.+|+|.|.. .+.|++++-|++|++|.+.+.
T Consensus 136 feGH~HyVMqv~fnPkD-------------------------~ntFaS~sLDrTVKVWslgs~----------------- 173 (794)
T KOG0276|consen 136 FEGHEHYVMQVAFNPKD-------------------------PNTFASASLDRTVKVWSLGSP----------------- 173 (794)
T ss_pred EcCcceEEEEEEecCCC-------------------------ccceeeeeccccEEEEEcCCC-----------------
Confidence 99999999999999974 578999999999999988752
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC--CEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCc
Q 000454 519 PPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN--RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1491)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG--~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~ 596 (1491)
.+..++.+|..+|+|+.|-+.| .+|++|+.|.+|+|||.++..|+++|.||...|..+.||| .--
T Consensus 174 ------------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-~lp 240 (794)
T KOG0276|consen 174 ------------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-ELP 240 (794)
T ss_pred ------------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-CCc
Confidence 3456678999999999998865 5999999999999999999999999999999999999999 556
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 000454 597 IAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659 (1491)
Q Consensus 597 lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~ 659 (1491)
+++||+.||+++||...+-++..++..+-..|+|++-.+.+..+++|.+.|.|. ..++.+++
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP 302 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEP 302 (794)
T ss_pred EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCC
Confidence 888999999999999999999999988889999999999999999998877664 46666554
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=292.56 Aligned_cols=304 Identities=21% Similarity=0.370 Sum_probs=264.1
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC
Q 000454 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1491)
Q Consensus 239 L~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk 318 (1491)
|..-+..|..++|+|...+|+++-..|.|.+||..-+.++..|..|.++|..|+|+|++.++++|+.|-.|+||+..+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEE
Q 000454 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1491)
Q Consensus 319 ~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sl 398 (1491)
++.++.||-..|..+.|++.-. .|++++.|.+|+||++.+.+++..+ .+|.+.|.|.
T Consensus 85 clftL~GHlDYVRt~~FHheyP---WIlSASDDQTIrIWNwqsr~~iavl--------------------tGHnHYVMcA 141 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYP---WILSASDDQTIRIWNWQSRKCIAVL--------------------TGHNHYVMCA 141 (1202)
T ss_pred ehhhhccccceeEEeeccCCCc---eEEEccCCCeEEEEeccCCceEEEE--------------------ecCceEEEee
Confidence 9999999999999999999877 9999999999999999999988877 5699999999
Q ss_pred EECCCCCEEEEecCCceEEEEeCCCCCCC---CC----------------CC-CCceeeeecCCCCCceEEEEccCcccc
Q 000454 399 AFNANGTVFVTGSSDTLARVWNACKPNTD---DS----------------DQ-PNHEIDVLSGHENDVNYVQFSGCAVAS 458 (1491)
Q Consensus 399 afSPDG~~LasGs~DG~IrVWDl~t~~~~---~s----------------~~-~~~~i~~l~gH~~~V~sVafSpdg~as 458 (1491)
.|+|...++++++-|.+|+|||+...... .. .+ ..-....+.||...|+.++|+|..
T Consensus 142 qFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl--- 218 (1202)
T KOG0292|consen 142 QFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL--- 218 (1202)
T ss_pred ccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc---
Confidence 99999999999999999999998532110 00 00 111234678999999999999864
Q ss_pred ccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 459 RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 459 ~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
..|++|+.|..|++|.+...+ . ..+....+
T Consensus 219 -----------------------pliVSG~DDRqVKlWrmnetK------a---------------------WEvDtcrg 248 (1202)
T KOG0292|consen 219 -----------------------PLIVSGADDRQVKLWRMNETK------A---------------------WEVDTCRG 248 (1202)
T ss_pred -----------------------ceEEecCCcceeeEEEecccc------c---------------------eeehhhhc
Confidence 589999999999999877422 1 23445678
Q ss_pred CCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l 618 (1491)
|...|.++.|+|...+|++.+.|+.|+|||+...+.++++.-..+..+.++.|| ...++ .+++|+-+.||.+....+.
T Consensus 249 H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP-~lNLf-AAgHDsGm~VFkleRErpa 326 (1202)
T KOG0292|consen 249 HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP-ELNLF-AAGHDSGMIVFKLERERPA 326 (1202)
T ss_pred ccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecC-Cccee-eeecCCceEEEEEcccCce
Confidence 999999999999999999999999999999999999999988888999999999 55555 5788999999998655544
Q ss_pred EE
Q 000454 619 RI 620 (1491)
Q Consensus 619 ~~ 620 (1491)
..
T Consensus 327 ~~ 328 (1202)
T KOG0292|consen 327 YA 328 (1202)
T ss_pred EE
Confidence 33
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=281.67 Aligned_cols=292 Identities=19% Similarity=0.281 Sum_probs=246.9
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCc
Q 000454 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353 (1491)
Q Consensus 277 ~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg---k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGt 353 (1491)
..+.+..|...|+-+.||++|+|||+++.|.+..||.+... +...++.+|..+|..|.|+||.+ +|++|+.+..
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr---yLlaCg~~e~ 292 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR---YLLACGFDEV 292 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC---eEEecCchHh
Confidence 34567789999999999999999999999999999987654 34778889999999999999998 9999999999
Q ss_pred EEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCC
Q 000454 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1491)
Q Consensus 354 VrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~ 433 (1491)
+.+||+.+|.+...+. .++...+.+++|.|||..|++|+.|+.|..||+..
T Consensus 293 ~~lwDv~tgd~~~~y~-------------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg---------- 343 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYP-------------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG---------- 343 (519)
T ss_pred eeeccCCcchhhhhcc-------------------cCcCCCcceeEEccCCceeEecCCCCcEEEecCCc----------
Confidence 9999999998765542 12457799999999999999999999999999963
Q ss_pred ceeeeecCCC-CCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccc
Q 000454 434 HEIDVLSGHE-NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ 512 (1491)
Q Consensus 434 ~~i~~l~gH~-~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~ 512 (1491)
..+....+-. ..|.+++.+++| ..+++...|..|++++..+..
T Consensus 344 n~~~~W~gvr~~~v~dlait~Dg--------------------------k~vl~v~~d~~i~l~~~e~~~---------- 387 (519)
T KOG0293|consen 344 NILGNWEGVRDPKVHDLAITYDG--------------------------KYVLLVTVDKKIRLYNREARV---------- 387 (519)
T ss_pred chhhcccccccceeEEEEEcCCC--------------------------cEEEEEecccceeeechhhhh----------
Confidence 2333334332 468899999886 688888899999999877522
Q ss_pred ccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCC--eEEEEE
Q 000454 513 AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES--TYVLDV 590 (1491)
Q Consensus 513 ~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~--VtsLaf 590 (1491)
...+.....+|+++++|.||+++++.-.+..|++||++...++..+.||... |..-+|
T Consensus 388 --------------------dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 388 --------------------DRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred --------------------hhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 1113445678999999999999999999999999999999999999999865 333356
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 000454 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 591 SPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG-~~LAsgs~DG~I~IWdl~t 656 (1491)
--.+..++++|+.|+.|+||+..+|+++..+.+|...|.+++|+|.. .++|++++||+|+||....
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 55455899999999999999999999999999999999999999955 5778999999999998753
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=273.07 Aligned_cols=316 Identities=21% Similarity=0.341 Sum_probs=253.7
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcE
Q 000454 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1491)
Q Consensus 275 g~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtV 354 (1491)
.++.+.+.+|.++|.||++.|.+.++++|+.|++|+|||+.+|+...++.||-..|..++|++.-. ||++++.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp---YlFs~gedk~V 217 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP---YLFSAGEDKQV 217 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc---eEEEecCCCee
Confidence 456678889999999999999999999999999999999999999999999999999999999876 99999999999
Q ss_pred EEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCc
Q 000454 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1491)
Q Consensus 355 rIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~ 434 (1491)
+.||+...+.+..+ .+|-..|.|++..|.-.
T Consensus 218 KCwDLe~nkvIR~Y--------------------hGHlS~V~~L~lhPTld----------------------------- 248 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHY--------------------HGHLSGVYCLDLHPTLD----------------------------- 248 (460)
T ss_pred EEEechhhhhHHHh--------------------ccccceeEEEeccccce-----------------------------
Confidence 99999877655443 23444455555554444
Q ss_pred eeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccc
Q 000454 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1491)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1491)
.|++|+.|.++++||+++.
T Consensus 249 ------------------------------------------------vl~t~grDst~RvWDiRtr------------- 267 (460)
T KOG0285|consen 249 ------------------------------------------------VLVTGGRDSTIRVWDIRTR------------- 267 (460)
T ss_pred ------------------------------------------------eEEecCCcceEEEeeeccc-------------
Confidence 4555555555555555542
Q ss_pred ccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCC
Q 000454 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594 (1491)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd 594 (1491)
..+..+.+|...|..+.+.|-...+++|+.|++|++||+..|+...++..|...|.+++.+| .
T Consensus 268 ----------------~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP-~ 330 (460)
T KOG0285|consen 268 ----------------ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP-K 330 (460)
T ss_pred ----------------ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC-c
Confidence 23445677889999999999889999999999999999999999999999999999999999 7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccceeeecCCCc
Q 000454 595 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYR 674 (1491)
Q Consensus 595 ~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~fs~D~r 674 (1491)
..++|+++.| .|+-|++..|..+..+.+|..-|.+++...|| ++++|++.|.|.+||..+|..++..
T Consensus 331 e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~----------- 397 (460)
T KOG0285|consen 331 ENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRG----------- 397 (460)
T ss_pred hhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccc-----------
Confidence 7888888877 59999999999999999999999999998887 6888999999999999887433321
Q ss_pred ceEEccCCCEEEccccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccC
Q 000454 675 PLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPL 754 (1491)
Q Consensus 675 ~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~ 754 (1491)
++. ..|..+. +..++...+|...|.+|.++ ..|.+|.+|--
T Consensus 398 -------------~t~------------------vqpGSl~-----sEagI~as~fDktg~rlit~---eadKtIk~~ke 438 (460)
T KOG0285|consen 398 -------------QTI------------------VQPGSLE-----SEAGIFASCFDKTGSRLITG---EADKTIKMYKE 438 (460)
T ss_pred -------------ccc------------------ccCCccc-----cccceeEEeecccCceEEec---cCCcceEEEec
Confidence 111 1112222 34567778999999999999 89999999976
Q ss_pred CCccccccCCcccccccccccCCc
Q 000454 755 ADLDVMIDPLPEFIDVMDWEPENE 778 (1491)
Q Consensus 755 ~~~~~lieplp~~i~~~~W~P~~e 778 (1491)
.+ ...+-..++.|.|+..
T Consensus 439 De------~aT~EthPl~w~P~~~ 456 (460)
T KOG0285|consen 439 DE------HATEETHPLNWKPELL 456 (460)
T ss_pred cc------ccCcccCCcCCCCchh
Confidence 32 2222233477999765
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=299.63 Aligned_cols=290 Identities=26% Similarity=0.410 Sum_probs=252.1
Q ss_pred EEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC--ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000454 279 ASCRG-HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 279 ~tL~g-H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk--~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVr 355 (1491)
..+.+ +...|.++.|+++|++|++++.++.|++|++.++. .+..+.+|...|.+++|+|++. ++++++.|++|+
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~---~l~s~s~D~tir 228 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS---YLLSGSDDKTLR 228 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc---EEEEecCCceEE
Confidence 34444 47899999999999999999999999999998877 7778889999999999999998 999999999999
Q ss_pred EEccC-CCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCc
Q 000454 356 IWDAR-YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1491)
Q Consensus 356 IWDl~-tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~ 434 (1491)
|||+. .+.++..+ .+|...|++++|+|+|+++++|+.|++|+|||+++ ..
T Consensus 229 iwd~~~~~~~~~~l--------------------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~---------~~ 279 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTL--------------------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT---------GE 279 (456)
T ss_pred EeeccCCCeEEEEe--------------------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC---------Ce
Confidence 99994 44555554 46999999999999999999999999999999976 56
Q ss_pred eeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccc
Q 000454 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1491)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1491)
.+..+.+|.+.|.+++|++++ ..|++++.||.|+|||+.++...
T Consensus 280 ~~~~l~~hs~~is~~~f~~d~--------------------------~~l~s~s~d~~i~vwd~~~~~~~---------- 323 (456)
T KOG0266|consen 280 CVRKLKGHSDGISGLAFSPDG--------------------------NLLVSASYDGTIRVWDLETGSKL---------- 323 (456)
T ss_pred EEEeeeccCCceEEEEECCCC--------------------------CEEEEcCCCccEEEEECCCCcee----------
Confidence 789999999999999999986 68999999999999999974411
Q ss_pred ccCCCCCCCCCCCCCCCCceeccCCCC--CeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeE---EEE
Q 000454 515 HLKVPPPPMPPQPPRGGPRQRILPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTY---VLD 589 (1491)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~--~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~Vt---sLa 589 (1491)
....+..+.. .+++++|+|++.+|++++.|+.+++||+..+.++..+.+|...+. +..
T Consensus 324 -----------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 324 -----------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred -----------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 0112222222 589999999999999999999999999999999999999988643 334
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeC-CcceEEEEEcCCCCEEEEEe--CCCcEEEEEC
Q 000454 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS-RFRLVDGKFSPDGASIILSD--DVGQLYILNT 654 (1491)
Q Consensus 590 fSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h-~~~VtslafSPDG~~LAsgs--~DG~I~IWdl 654 (1491)
.++ ++.++++|+.|+.|.+|++.++..+..+.+| ...+..+.|+|...++++++ .|+.|++|..
T Consensus 387 ~~~-~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 387 LST-GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred ccC-CCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 455 7789999999999999999999999999999 88899999999999999987 7899999975
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=279.38 Aligned_cols=282 Identities=22% Similarity=0.359 Sum_probs=244.7
Q ss_pred ceeeeccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEEecCCCCeEEEEEc
Q 000454 216 IRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET-AYCLASCRGHEGDITDLAVS 294 (1491)
Q Consensus 216 l~s~~~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T-g~~l~tL~gH~~~VtsLafS 294 (1491)
++++.-...+-.|++.++++.+.|+||++.|..|+|+..|++||+++.|-.+++||..+ .++++.+.+|...|.+++|-
T Consensus 123 v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~ 202 (406)
T KOG0295|consen 123 VVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFL 202 (406)
T ss_pred EEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEE
Confidence 33333344455678888999999999999999999999999999999999999999987 67888899999999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCC
Q 000454 295 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1491)
Q Consensus 295 PDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~ 374 (1491)
|.|.+|++++.|.+|+.|++.+|.++.++.+|...|..++.+.||. ++++++.|.+|++|-+.++++...+
T Consensus 203 P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt---i~As~s~dqtl~vW~~~t~~~k~~l------ 273 (406)
T KOG0295|consen 203 PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT---IIASCSNDQTLRVWVVATKQCKAEL------ 273 (406)
T ss_pred ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee---EEEecCCCceEEEEEeccchhhhhh------
Confidence 9999999999999999999999999999999999999999999997 9999999999999999998776665
Q ss_pred CcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 375 ~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
..|...|.|++|.|...+ .. |.+. .+.. +
T Consensus 274 --------------R~hEh~vEci~wap~~~~--~~-------i~~a------------------t~~~----------~ 302 (406)
T KOG0295|consen 274 --------------REHEHPVECIAWAPESSY--PS-------ISEA------------------TGST----------N 302 (406)
T ss_pred --------------hccccceEEEEecccccC--cc-------hhhc------------------cCCC----------C
Confidence 458889999999986431 00 0000 0000 0
Q ss_pred ccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCce
Q 000454 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534 (1491)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 534 (1491)
+ ...+++++.|++|++||+.++ ..+.
T Consensus 303 ~-------------------------~~~l~s~SrDktIk~wdv~tg-----------------------------~cL~ 328 (406)
T KOG0295|consen 303 G-------------------------GQVLGSGSRDKTIKIWDVSTG-----------------------------MCLF 328 (406)
T ss_pred C-------------------------ccEEEeecccceEEEEeccCC-----------------------------eEEE
Confidence 1 258999999999999999973 3567
Q ss_pred eccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 535 ~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
.+.+|...|..++|+|.|+||+++..|++++|||+.++++++++..|..-|++++|+. ..-+++||+-|.++++|..
T Consensus 329 tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 329 TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC-CCceEEeccccceeeeeec
Confidence 7889999999999999999999999999999999999999999999999999999998 5558889999999999964
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-29 Score=288.43 Aligned_cols=291 Identities=19% Similarity=0.300 Sum_probs=252.1
Q ss_pred CeEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCC
Q 000454 275 AYCLASCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 352 (1491)
Q Consensus 275 g~~l~tL~gH~~~VtsLafSP-DG~lLASGS~DGtIrVWDl~t-gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DG 352 (1491)
.+.+.++.||...|+++.|.| .+.+|++++.|+.|+||++-. +.+++++.+|..+|.+++|++++. .|++++.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~---~fLS~sfD~ 280 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT---SFLSASFDR 280 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC---eeeeeecce
Confidence 356778899999999999999 899999999999999999976 899999999999999999999998 899999999
Q ss_pred cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCC
Q 000454 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1491)
Q Consensus 353 tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~ 431 (1491)
.|++||+++|+++..+. ....++|+.|.|++ +.|++|+.|+.|+.||+++
T Consensus 281 ~lKlwDtETG~~~~~f~---------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-------- 331 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFH---------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-------- 331 (503)
T ss_pred eeeeeccccceEEEEEe---------------------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc--------
Confidence 99999999999988874 34568999999998 8999999999999999987
Q ss_pred CCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccc
Q 000454 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1491)
Q Consensus 432 ~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~ 511 (1491)
...+..+..|-+.|..|.|-+.+ .++++.+.|++++||+....-.+.
T Consensus 332 -~kvvqeYd~hLg~i~~i~F~~~g--------------------------~rFissSDdks~riWe~~~~v~ik------ 378 (503)
T KOG0282|consen 332 -GKVVQEYDRHLGAILDITFVDEG--------------------------RRFISSSDDKSVRIWENRIPVPIK------ 378 (503)
T ss_pred -hHHHHHHHhhhhheeeeEEccCC--------------------------ceEeeeccCccEEEEEcCCCccch------
Confidence 45677888999999999999886 699999999999999987532110
Q ss_pred cccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCC---ceEEEEeCCCC--CeE
Q 000454 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG---SLVHSLTGHTE--STY 586 (1491)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg---kll~tL~gHs~--~Vt 586 (1491)
...........++..+|++.++++-+.|+.|.||.+... .....+.||.. --.
T Consensus 379 ----------------------~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 379 ----------------------NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred ----------------------hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 011123334668999999999999999999999997543 23346778864 456
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 000454 587 VLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILN 653 (1491)
Q Consensus 587 sLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG-~~LAsgs~DG~I~IWd 653 (1491)
.+.||| ++.+|++|+.||.+.+||..+-+++..+..|...++.+.|+|.. ..||+++.+|.|+||+
T Consensus 437 ~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 437 QVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEcC-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 689999 78899999999999999999999999999999999999999964 5688899999999996
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-27 Score=255.17 Aligned_cols=293 Identities=20% Similarity=0.299 Sum_probs=240.7
Q ss_pred EEEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC---Cceeee-ccCCCceEEEEecCCCCceEEEEEEeCC
Q 000454 277 CLASCRGHEGDITDLAVSSN-NALVASASNDCIIRVWRLPDG---LPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDD 351 (1491)
Q Consensus 277 ~l~tL~gH~~~VtsLafSPD-G~lLASGS~DGtIrVWDl~tg---k~i~~L-~gHs~~VtsLaFSPdg~s~~~LaSgS~D 351 (1491)
.++.+.+|.+.|..++|+|- |..||+|+.|+.|+||+...+ .+...+ .+|+..|..++|+|.++ +|++++.|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~---~La~aSFD 82 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR---YLASASFD 82 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc---EEEEeecc
Confidence 46778899999999999998 889999999999999998753 333334 37999999999999998 99999999
Q ss_pred CcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCC
Q 000454 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1491)
Q Consensus 352 GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~ 431 (1491)
+++.||.-..+.+...- ...+|...|.|++|+++|.+||+++.|..|-||.+.. ..
T Consensus 83 ~t~~Iw~k~~~efecv~------------------~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de------dd 138 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVA------------------TLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE------DD 138 (312)
T ss_pred ceEEEeecCCCceeEEe------------------eeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC------CC
Confidence 99999987655543322 2356999999999999999999999999999999863 23
Q ss_pred CCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccc
Q 000454 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1491)
Q Consensus 432 ~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~ 511 (1491)
....+..+..|+..|..+.|+|.. +.|+++|.|.+|++|.-... ..|
T Consensus 139 Efec~aVL~~HtqDVK~V~WHPt~--------------------------dlL~S~SYDnTIk~~~~~~d------ddW- 185 (312)
T KOG0645|consen 139 EFECIAVLQEHTQDVKHVIWHPTE--------------------------DLLFSCSYDNTIKVYRDEDD------DDW- 185 (312)
T ss_pred cEEEEeeeccccccccEEEEcCCc--------------------------ceeEEeccCCeEEEEeecCC------CCe-
Confidence 367888999999999999999964 69999999999999975521 111
Q ss_pred cccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEe
Q 000454 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 591 (1491)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafS 591 (1491)
...+.+.+|...|.+++|++.|..|++++.|++|+||-..+.- -..|...++.++|.
T Consensus 186 -------------------~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 186 -------------------ECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD 242 (312)
T ss_pred -------------------eEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec
Confidence 3456677888899999999999999999999999999865221 12477889999996
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCC------ceEE-EEeeCCcceEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 000454 592 PFNPRIAMSAGYDGKTIVWDIWEG------IPIR-IYEISRFRLVDGKFSPD-GASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 592 Pdd~~lLaSgS~DGtIrIWDl~tG------k~l~-~l~~h~~~VtslafSPD-G~~LAsgs~DG~I~IWdl~ 655 (1491)
...|+|++.|+.|+||.-..+ .++. .-..|...|.+++|.|. ...|++|++||.|.+|.+.
T Consensus 243 ---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 243 ---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 468899999999999987643 1111 22356778999999995 7789999999999999863
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=258.33 Aligned_cols=287 Identities=20% Similarity=0.287 Sum_probs=243.0
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000454 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP-DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 278 l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~-tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrI 356 (1491)
+..+.+|.+.|..+.|+|+|.+||+|+.|..|.+|++. ..+-..++++|.++|..+.|.+++. .|++++.|.+|+.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s---~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGS---HILSCGTDKTVRG 116 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCC---EEEEecCCceEEE
Confidence 34567999999999999999999999999999999953 4566778899999999999999998 9999999999999
Q ss_pred EccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCCCCce
Q 000454 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435 (1491)
Q Consensus 357 WDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~ 435 (1491)
||+++|+...++ ..|..-|..+.-+.-| .++.+|+.|++++|||+++.. .
T Consensus 117 wD~~tG~~~rk~--------------------k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~---------~ 167 (338)
T KOG0265|consen 117 WDAETGKRIRKH--------------------KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE---------A 167 (338)
T ss_pred Eecccceeeehh--------------------ccccceeeecCccccCCeEEEecCCCceEEEEeecccc---------h
Confidence 999999987776 3477778888754445 466778899999999998632 2
Q ss_pred eeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccc
Q 000454 436 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515 (1491)
Q Consensus 436 i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~ 515 (1491)
+.. ....-.++++.|...+ +.+++|+-|+.|++||++..
T Consensus 168 ~~t-~~~kyqltAv~f~d~s--------------------------~qv~sggIdn~ikvWd~r~~-------------- 206 (338)
T KOG0265|consen 168 IKT-FENKYQLTAVGFKDTS--------------------------DQVISGGIDNDIKVWDLRKN-------------- 206 (338)
T ss_pred hhc-cccceeEEEEEecccc--------------------------cceeeccccCceeeeccccC--------------
Confidence 222 2234568889998664 68999999999999999852
Q ss_pred cCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC----CceEEEEeCCCC----CeEE
Q 000454 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD----GSLVHSLTGHTE----STYV 587 (1491)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t----gkll~tL~gHs~----~Vts 587 (1491)
.....+.+|...|+.+..+++|.++.+-++|.++++||++- .+++..+.+|.. ....
T Consensus 207 ---------------d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 207 ---------------DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred ---------------cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 23556788999999999999999999999999999999964 355788887653 2356
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 588 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 588 LafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
.+|+| +.+.+.+|+.|..+++||......+..+.+|.+.|.++.|+|....|.+++.|.+|++=.
T Consensus 272 cswsp-~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 272 CSWSP-NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eeccC-CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 78999 778888999999999999988899999999999999999999999999999999998743
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=265.49 Aligned_cols=288 Identities=23% Similarity=0.385 Sum_probs=246.8
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe--------cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 000454 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR--------GHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 241 GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~--------gH~~~VtsLafSPDG~lLASGS~DGtIrVW 312 (1491)
|....+-|..|||||+||++|+.||-|-||+..+|++.+.++ -+..+|.|+.|+.|..+||+|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 667789999999999999999999999999999998766543 478899999999999999999999999999
Q ss_pred ECCCCCceeeec-cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCC
Q 000454 313 RLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1491)
Q Consensus 313 Dl~tgk~i~~L~-gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h 391 (1491)
.+.+|.+++.|. .|+..|+|+.|+.|+. .+++++.|.+|+|--+..|+++..+ .+|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~S---qiLS~sfD~tvRiHGlKSGK~LKEf--------------------rGH 347 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNS---QILSASFDQTVRIHGLKSGKCLKEF--------------------RGH 347 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcc---hhhcccccceEEEeccccchhHHHh--------------------cCc
Confidence 999999999997 8999999999999987 8999999999999999999998877 568
Q ss_pred CcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCC
Q 000454 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1491)
Q Consensus 392 ~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1491)
...|+...|.++|..+++++.||+|+||+..+..+.....+ .+..-.|..+...|..
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~-------~~~d~~vnsv~~~PKn---------------- 404 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP-------LGTDYPVNSVILLPKN---------------- 404 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC-------CCCcccceeEEEcCCC----------------
Confidence 99999999999999999999999999999987655433322 2345567777777653
Q ss_pred ccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC
Q 000454 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551 (1491)
Q Consensus 472 ~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD 551 (1491)
+..+++|...++|.|.++...- .+.+.. + ....+...+.++||.
T Consensus 405 ---------peh~iVCNrsntv~imn~qGQv--------VrsfsS-------------G------kREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 405 ---------PEHFIVCNRSNTVYIMNMQGQV--------VRSFSS-------------G------KREGGDFINAILSPK 448 (508)
T ss_pred ---------CceEEEEcCCCeEEEEeccceE--------Eeeecc-------------C------CccCCceEEEEecCC
Confidence 4689999999999998876311 000000 0 112344667789999
Q ss_pred CCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 552 NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 552 G~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
|.++.+.+.|+.++.|...+|++-+++.-|...|..++-|| ...++|+-+.||.+++|.
T Consensus 449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence 99999999999999999999999999999999999999999 778999999999999995
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-26 Score=259.91 Aligned_cols=421 Identities=18% Similarity=0.249 Sum_probs=307.1
Q ss_pred eEEEEccCCCCEEEEEEcCCCCEEEEEeCCC--------eEEEEECCCCeEEEEEecCCCCeEEEEEcC--CCCEEEEE-
Q 000454 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDR--------LVKIWSMETAYCLASCRGHEGDITDLAVSS--NNALVASA- 303 (1491)
Q Consensus 235 ~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DG--------tIrIWDl~Tg~~l~tL~gH~~~VtsLafSP--DG~lLASG- 303 (1491)
..+.+.||...|.|++++||.-++|+|-.-| .|+|||..+...+..+......|+|++|++ .|.+|+..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 4567889999999999999998999885544 599999998888888888888999999998 34555554
Q ss_pred -ECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCC
Q 000454 304 -SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1491)
Q Consensus 304 -S~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~ 382 (1491)
+.+..+.|||++.+......+.....|....|+|.+. -|+.....|.+.+|+++++.+..+.-+-
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~---nliit~Gk~H~~Fw~~~~~~l~k~~~~f----------- 241 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDP---NLIITCGKGHLYFWTLRGGSLVKRQGIF----------- 241 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCC---cEEEEeCCceEEEEEccCCceEEEeecc-----------
Confidence 3456789999999988888887888999999999987 4555555688999999988876665221
Q ss_pred CCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccccc
Q 000454 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1491)
Q Consensus 383 ~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~ 462 (1491)
.......|.|++|.++|. +++|.++|.|.||+..+ .+.......|.+.|.+++...+|
T Consensus 242 -----ek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~---------~~~~k~~~aH~ggv~~L~~lr~G------- 299 (626)
T KOG2106|consen 242 -----EKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGT---------NRISKQVHAHDGGVFSLCMLRDG------- 299 (626)
T ss_pred -----ccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCC---------ceEEeEeeecCCceEEEEEecCc-------
Confidence 112336799999999997 67899999999999865 33444455999999999998876
Q ss_pred ccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCc--cccccc--ccc-------ccCCCCCCCCCCCCCCC
Q 000454 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHP--KAARWT--QAY-------HLKVPPPPMPPQPPRGG 531 (1491)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~--~~~~~~--~~~-------~l~~~~~~~~~~~~~~~ 531 (1491)
.|++|+.|..|..||-.-.+... ....+. +.. -+...............
T Consensus 300 --------------------tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 300 --------------------TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred --------------------cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 78889999999999833211100 000000 000 00000000000111223
Q ss_pred CceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 532 PRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 532 ~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
......+|......++.+|+...+++++.|+.+++|+ ..+++.+.. -..++.|+.|+|.+ .+|.|...|...|.|
T Consensus 360 f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d 434 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG--VVAVGTATGRWFVLD 434 (626)
T ss_pred ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc--eEEEeeccceEEEEe
Confidence 3345567888899999999999999999999999999 445554433 34568899999955 888899999999999
Q ss_pred CCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccceeeecCCCcceEEccCCCEEEccccc
Q 000454 612 IWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQL 691 (1491)
Q Consensus 612 l~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~ 691 (1491)
.++...+..-. ...++.+++|+|+|.+||+|+.|+.|+||.+..+. ..+.
T Consensus 435 ~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g------------------------~~y~----- 484 (626)
T KOG2106|consen 435 TETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG------------------------RKYS----- 484 (626)
T ss_pred cccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC------------------------cEEE-----
Confidence 98865555544 48899999999999999999999999999985432 1111
Q ss_pred cCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCccccccCCccccccc
Q 000454 692 APHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVMIDPLPEFIDVM 771 (1491)
Q Consensus 692 ~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~~~lieplp~~i~~~ 771 (1491)
.. +.| +...+..+.||+|+.+|... +.|..+..| .+.....+.+ ...+
T Consensus 485 ---r~----~k~-----------------~gs~ithLDwS~Ds~~~~~~---S~d~eiLyW-~~~~~~~~ts----~kDv 532 (626)
T KOG2106|consen 485 ---RV----GKC-----------------SGSPITHLDWSSDSQFLVSN---SGDYEILYW-KPSECKQITS----VKDV 532 (626)
T ss_pred ---Ee----eee-----------------cCceeEEeeecCCCceEEec---cCceEEEEE-ccccCcccce----ecce
Confidence 00 000 00123459999999999997 999999999 4433333333 5568
Q ss_pred ccccCCc
Q 000454 772 DWEPENE 778 (1491)
Q Consensus 772 ~W~P~~e 778 (1491)
.|..-.=
T Consensus 533 kW~t~~c 539 (626)
T KOG2106|consen 533 KWATYTC 539 (626)
T ss_pred eeeeeEE
Confidence 8876544
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-27 Score=262.65 Aligned_cols=295 Identities=21% Similarity=0.364 Sum_probs=248.6
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC
Q 000454 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1491)
Q Consensus 283 gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg 362 (1491)
.|...|.+|... +++|++|+.||.++|||. .|+.+..+.+|+++|.+++|.-.+.....|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 388999999887 779999999999999995 69999999999999999988655443347999999999999998877
Q ss_pred CccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCC----------------
Q 000454 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNT---------------- 426 (1491)
Q Consensus 363 ~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~---------------- 426 (1491)
....... ....+|...|-+++..++|..+++|+.|.+|.||+..+...
T Consensus 180 ~~~~~~~----------------~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~ 243 (423)
T KOG0313|consen 180 ENKVKAL----------------KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR 243 (423)
T ss_pred hhhhhHH----------------hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh
Confidence 6443321 12237999999999999999999999999999999322111
Q ss_pred CCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcc
Q 000454 427 DDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPK 506 (1491)
Q Consensus 427 ~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~ 506 (1491)
........++..+.+|..+|.+|.|++. ..+++++.|.+|+.||+.+++.
T Consensus 244 ~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---------------------------~v~yS~SwDHTIk~WDletg~~--- 293 (423)
T KOG0313|consen 244 EKEGGTRTPLVTLEGHTEPVSSVVWSDA---------------------------TVIYSVSWDHTIKVWDLETGGL--- 293 (423)
T ss_pred hhcccccCceEEecccccceeeEEEcCC---------------------------CceEeecccceEEEEEeecccc---
Confidence 1112234567789999999999999974 4899999999999999997542
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCc---eEEEEeCCCC
Q 000454 507 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS---LVHSLTGHTE 583 (1491)
Q Consensus 507 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgk---ll~tL~gHs~ 583 (1491)
.........++++.++|..++|++|+.|..|++||.+++. ..++|.||.+
T Consensus 294 ---------------------------~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n 346 (423)
T KOG0313|consen 294 ---------------------------KSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN 346 (423)
T ss_pred ---------------------------eeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh
Confidence 1223345678999999999999999999999999998753 4568999999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 584 STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI-PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 584 ~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk-~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
.|.++.|+|.+..+|+++++|+++++||+++.+ ++..+.+|...|.++.|. ++.+|++|+.|.+|+|+..
T Consensus 347 wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 347 WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 999999999999999999999999999999887 999999999999999997 5668999999999999874
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-28 Score=268.47 Aligned_cols=272 Identities=24% Similarity=0.423 Sum_probs=230.7
Q ss_pred CcceeeeccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEE
Q 000454 214 PSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAV 293 (1491)
Q Consensus 214 ~sl~s~~~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLaf 293 (1491)
..+.+...+..+-.|+.....+++.|.||++.|.|+.|.. +.|++|+.|.+|+|||+.+|+++.++-+|...|..+.|
T Consensus 208 ~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf 285 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRF 285 (499)
T ss_pred hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEE
Confidence 3344444555666789999999999999999999999964 59999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCC---ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeec
Q 000454 294 SSNNALVASASNDCIIRVWRLPDGL---PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370 (1491)
Q Consensus 294 SPDG~lLASGS~DGtIrVWDl~tgk---~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~ 370 (1491)
+ +.++++++.|.+|.|||+.... +.+++.||.+.|..+.|+.. ++++++.|.+|++|++.+++++.++
T Consensus 286 ~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-----yIVsASgDRTikvW~~st~efvRtl-- 356 (499)
T KOG0281|consen 286 S--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-----YIVSASGDRTIKVWSTSTCEFVRTL-- 356 (499)
T ss_pred e--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-----eEEEecCCceEEEEeccceeeehhh--
Confidence 8 5699999999999999998764 44678899999999999764 8999999999999999999988776
Q ss_pred CCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEE
Q 000454 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450 (1491)
Q Consensus 371 ~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVa 450 (1491)
.+|...|-|+.+ .|+++++|+.|.+|++||+.. +.++..+.||..-|.+|.
T Consensus 357 ------------------~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~---------G~cLRvLeGHEeLvRciR 407 (499)
T KOG0281|consen 357 ------------------NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC---------GACLRVLEGHEELVRCIR 407 (499)
T ss_pred ------------------hcccccceehhc--cCeEEEecCCCceEEEEeccc---------cHHHHHHhchHHhhhhee
Confidence 457888888887 589999999999999999976 567899999999999999
Q ss_pred EccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 000454 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530 (1491)
Q Consensus 451 fSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 530 (1491)
|.. ..+++|+.||+|++||+...... ..+...
T Consensus 408 Fd~----------------------------krIVSGaYDGkikvWdl~aaldp--------------------ra~~~~ 439 (499)
T KOG0281|consen 408 FDN----------------------------KRIVSGAYDGKIKVWDLQAALDP--------------------RAPAST 439 (499)
T ss_pred ecC----------------------------ceeeeccccceEEEEecccccCC--------------------cccccc
Confidence 974 58999999999999999863311 011122
Q ss_pred CCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceE
Q 000454 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV 575 (1491)
Q Consensus 531 ~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll 575 (1491)
-.+..+..|.+.|..+.| |...|++++.|.+|.|||+.++..-
T Consensus 440 ~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 440 LCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred hHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 344556678889999988 4568999999999999999877554
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=271.93 Aligned_cols=448 Identities=18% Similarity=0.220 Sum_probs=343.1
Q ss_pred ccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-E
Q 000454 221 YAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA-L 299 (1491)
Q Consensus 221 ~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~-l 299 (1491)
.......|.+.+.+.+.+++++...|+++.=+|--..+|.|..+|+|.|+++..++.+.+++...+.|+.++|.-||. +
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~ 259 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPL 259 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCee
Confidence 344556789999999999999999999999999999999999999999999999999999995569999999999998 5
Q ss_pred EEEEECCCeEEEEECCCCCceeeec-cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCccc
Q 000454 300 VASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378 (1491)
Q Consensus 300 LASGS~DGtIrVWDl~tgk~i~~L~-gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~ 378 (1491)
||+|+..|.+.+||++..+.+..+. .|.+.|..+.|.|... .|++++.|..+++|=.+++.-.+++
T Consensus 260 las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep---Vl~ta~~DnSlk~~vfD~~dg~pR~---------- 326 (910)
T KOG1539|consen 260 LASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP---VLVTAGADNSLKVWVFDSGDGVPRL---------- 326 (910)
T ss_pred EEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc---eEeeccCCCceeEEEeeCCCCcchh----------
Confidence 6777778999999999888877776 7889999999999877 9999999999999977655544333
Q ss_pred CCCCCCCCCCCCCCcceEEEEEC-CCCCEEEEecCCceEEEEeCCCCCCCCCCCCC------ceee---eecCCCCCceE
Q 000454 379 GRNMAPSSSAGPQSHQIFCCAFN-ANGTVFVTGSSDTLARVWNACKPNTDDSDQPN------HEID---VLSGHENDVNY 448 (1491)
Q Consensus 379 g~~~~~~~s~~~h~~~V~slafS-PDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~------~~i~---~l~gH~~~V~s 448 (1491)
.....+|..+..|+.|. .+|.++.+++.|++.+.+++............ +... .....-.+|..
T Consensus 327 ------LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 327 ------LRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred ------eeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 22345789999999998 68999999999999999987542211111000 0000 00111123333
Q ss_pred EEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCC
Q 000454 449 VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528 (1491)
Q Consensus 449 VafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~ 528 (1491)
+++...- ...| .+.+++.-.+..++.|+++.... +.|. +.
T Consensus 401 fa~~~~R-------------------E~~W--~Nv~~~h~~~~~~~tW~~~n~~~----G~~~----L~----------- 440 (910)
T KOG1539|consen 401 FAFENAR-------------------EKEW--DNVITAHKGKRSAYTWNFRNKTS----GRHV----LD----------- 440 (910)
T ss_pred eecccch-------------------hhhh--cceeEEecCcceEEEEeccCccc----ccEE----ec-----------
Confidence 3332210 1112 34566666778899999986431 1111 00
Q ss_pred CCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEE---eCCCCCeEEEEEecCCCcEEEEEeCCC
Q 000454 529 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL---TGHTESTYVLDVHPFNPRIAMSAGYDG 605 (1491)
Q Consensus 529 ~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL---~gHs~~VtsLafSPdd~~lLaSgS~DG 605 (1491)
..++......+++++.++.|++.+.|...|.|-+|++++|-....+ ..|.++|++++... -++.+++++.+|
T Consensus 441 ----~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~G 515 (910)
T KOG1539|consen 441 ----PKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADG 515 (910)
T ss_pred ----CccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcc
Confidence 0111224457899999999999999999999999999999999988 58999999999976 557888999999
Q ss_pred cEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc------cccceeeecCCCcceEEc
Q 000454 606 KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK------DAKYDQFFLGDYRPLVQD 679 (1491)
Q Consensus 606 tIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~------~~~~~~~fs~D~r~La~d 679 (1491)
.+++||.....++..+.. ...+..+..+.....+|++.+|-.|.++|+.+.+..+ ....+..|++|+++|+..
T Consensus 516 ilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 516 ILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISA 594 (910)
T ss_pred eEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEe
Confidence 999999999988888873 4467888889999999999999999999999876543 445788999999999988
Q ss_pred cCCCEEEccccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCC-CcEEeccCCC
Q 000454 680 TYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLD-QGYQLQPLAD 756 (1491)
Q Consensus 680 ~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d-~~v~lw~~~~ 756 (1491)
.....+ ..|+++++.+.-. +..+.++ .++.|||.|.+||+. ..| ..|-+|....
T Consensus 595 smD~tI--------r~wDlpt~~lID~-~~vd~~~-----------~sls~SPngD~LAT~---Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 595 SMDSTI--------RTWDLPTGTLIDG-LLVDSPC-----------TSLSFSPNGDFLATV---HVDQNGIYLWSNKS 649 (910)
T ss_pred ecCCcE--------EEEeccCcceeee-EecCCcc-----------eeeEECCCCCEEEEE---EecCceEEEEEchh
Confidence 775554 3699887765332 3333333 359999999999998 555 4899998743
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=254.07 Aligned_cols=292 Identities=23% Similarity=0.316 Sum_probs=254.9
Q ss_pred EEEEecCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcE
Q 000454 278 LASCRGHEGDITDLAVSS---NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1491)
Q Consensus 278 l~tL~gH~~~VtsLafSP---DG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtV 354 (1491)
-.++.||..+|..++||| +|-+|++++.|+.-.+-+-.+|.-+.+|.+|.+.|++.++..+.. ..++++.|-+-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~---~aasaaadfta 83 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNAT---RAASAAADFTA 83 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhh---hhhhhcccchh
Confidence 346789999999999986 888999999999999999999999999999999999999988865 78899999999
Q ss_pred EEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCc
Q 000454 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1491)
Q Consensus 355 rIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~ 434 (1491)
+|||.-+|..+..+ .|..-|..++|+.|.++|++|+.+..++|||+..+ ..
T Consensus 84 kvw~a~tgdelhsf---------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p--------~A 134 (334)
T KOG0278|consen 84 KVWDAVTGDELHSF---------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP--------KA 134 (334)
T ss_pred hhhhhhhhhhhhhh---------------------hhhheeeeEEecccchhhhccchHHHhhhhhccCC--------CC
Confidence 99999988776655 27788999999999999999999999999999753 45
Q ss_pred eeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccc
Q 000454 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1491)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1491)
+...+.+|.+.|..+.|... ...|++.+.|++|++||.+++.
T Consensus 135 pp~E~~ghtg~Ir~v~wc~e--------------------------D~~iLSSadd~tVRLWD~rTgt------------ 176 (334)
T KOG0278|consen 135 PPKEISGHTGGIRTVLWCHE--------------------------DKCILSSADDKTVRLWDHRTGT------------ 176 (334)
T ss_pred CchhhcCCCCcceeEEEecc--------------------------CceEEeeccCCceEEEEeccCc------------
Confidence 66778999999999999865 3578888999999999999854
Q ss_pred ccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCC
Q 000454 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594 (1491)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd 594 (1491)
....+.....|+++.++++|++|.++ ..+.|.+||..+..+++.+... ..|.+...+| .
T Consensus 177 ------------------~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P-~ 235 (334)
T KOG0278|consen 177 ------------------EVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-CNVESASLHP-K 235 (334)
T ss_pred ------------------EEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc-cccccccccC-C
Confidence 22233456679999999999987766 5678999999999999887643 4588899999 5
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEE-eeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCccc
Q 000454 595 PRIAMSAGYDGKTIVWDIWEGIPIRIY-EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 660 (1491)
Q Consensus 595 ~~lLaSgS~DGtIrIWDl~tGk~l~~l-~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~ 660 (1491)
..++++|+.|+.++.||..+|..+..+ .+|.++|.|+.|+|||...|+|+.||+|+||.+..++..
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 578889999999999999999999997 889999999999999999999999999999999877543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=282.31 Aligned_cols=290 Identities=25% Similarity=0.464 Sum_probs=253.1
Q ss_pred EEEcc-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000454 237 KRVRG-HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS-CRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 237 ~tL~G-H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~t-L~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl 314 (1491)
..+.+ |...|.|..|. +.++++++.+.+|++|+..++..+.. +.||.+.|++++|..-+.+|++|+.|.+++|||+
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 34444 67789999998 56899999999999999999999988 9999999999999987889999999999999999
Q ss_pred CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
.+|.++.++.+|...|.++...+. .+++|+.|.+|++|++.++.++..+ .+|...
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~~-----~~~sgs~D~tVkVW~v~n~~~l~l~--------------------~~h~~~ 333 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDPF-----LLVSGSRDNTVKVWDVTNGACLNLL--------------------RGHTGP 333 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccCc-----eEeeccCCceEEEEeccCcceEEEe--------------------cccccc
Confidence 999999999999999999999886 7889999999999999999887776 348899
Q ss_pred eEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccc
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1491)
|.++.++ +.++++|+.|++|.||++.+ .+.+..+.+|...|.++.+.+.
T Consensus 334 V~~v~~~--~~~lvsgs~d~~v~VW~~~~---------~~cl~sl~gH~~~V~sl~~~~~-------------------- 382 (537)
T KOG0274|consen 334 VNCVQLD--EPLLVSGSYDGTVKVWDPRT---------GKCLKSLSGHTGRVYSLIVDSE-------------------- 382 (537)
T ss_pred EEEEEec--CCEEEEEecCceEEEEEhhh---------ceeeeeecCCcceEEEEEecCc--------------------
Confidence 9999998 88999999999999999975 6789999999999999988752
Q ss_pred cccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCE
Q 000454 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 554 (1491)
Q Consensus 475 ~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~ 554 (1491)
..+++|+.|++|++||+.+.+ .++..+.+|..-+..+. ..+++
T Consensus 383 -------~~~~Sgs~D~~IkvWdl~~~~----------------------------~c~~tl~~h~~~v~~l~--~~~~~ 425 (537)
T KOG0274|consen 383 -------NRLLSGSLDTTIKVWDLRTKR----------------------------KCIHTLQGHTSLVSSLL--LRDNF 425 (537)
T ss_pred -------ceEEeeeeccceEeecCCchh----------------------------hhhhhhcCCcccccccc--cccce
Confidence 489999999999999999741 23444555666665544 46789
Q ss_pred EEEEeccceEEEEECCCCceEEEEeC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeC
Q 000454 555 VLAAIMDCRICVWNAADGSLVHSLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1491)
Q Consensus 555 LaSGs~DG~IrIWDl~tgkll~tL~g-Hs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h 624 (1491)
|++++.|++|++||..++++++++.+ |...|+.+++. ...+++++.||.+++||+.++++++.+..+
T Consensus 426 Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 426 LVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred eEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 99999999999999999999999999 77888888875 457778999999999999999998877433
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=245.66 Aligned_cols=294 Identities=18% Similarity=0.236 Sum_probs=236.6
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 000454 238 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317 (1491)
Q Consensus 238 tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg 317 (1491)
.|+||.-+++.|.|+.+|.+|++++.|.++.||-..+|+.+.++.||.+.|+|+..+.+.++|++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeccCCCceEEEEecCCCCceEEEEEEe-----CCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS-----DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 318 k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS-----~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
+++..++ ...+|..+.|+++++ +++.+. ..+.|.++|++.......- ..+......+.
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn---~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s-------------~ep~~kI~t~~ 147 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGN---LILASTDKQMGYTCFVSVFDIRDDSSDIDS-------------EEPYLKIPTPD 147 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCc---EEEEEehhhcCcceEEEEEEccCChhhhcc-------------cCceEEecCCc
Confidence 9999998 567899999999987 444443 3467899998743210000 00000112245
Q ss_pred cceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCc
Q 000454 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1491)
Q Consensus 393 ~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1491)
..++.+.|.|-+.+|++|..+|.|.+||++++ ...+.....|...|+.++++++.
T Consensus 148 skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g--------~~~v~s~~~h~~~Ind~q~s~d~----------------- 202 (327)
T KOG0643|consen 148 SKITSALWGPLGETIIAGHEDGSISIYDARTG--------KELVDSDEEHSSKINDLQFSRDR----------------- 202 (327)
T ss_pred cceeeeeecccCCEEEEecCCCcEEEEEcccC--------ceeeechhhhccccccccccCCc-----------------
Confidence 77999999999999999999999999999875 23455667889999999999985
Q ss_pred cccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC
Q 000454 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1491)
Q Consensus 473 ~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 552 (1491)
.+|++++.|.+.++||+.+.. +........+|++.+++|-.
T Consensus 203 ---------T~FiT~s~Dttakl~D~~tl~------------------------------v~Kty~te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 203 ---------TYFITGSKDTTAKLVDVRTLE------------------------------VLKTYTTERPVNTAAISPLL 243 (327)
T ss_pred ---------ceEEecccCccceeeecccee------------------------------eEEEeeecccccceeccccc
Confidence 699999999999999998732 23334456789999999988
Q ss_pred CEEEEEeccceEEE--------------EECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 553 RFVLAAIMDCRICV--------------WNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 553 ~~LaSGs~DG~IrI--------------WDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
.+++.|+.....-| |++-..+.+..++||-++|++|+||| +++..++|+.||.|+|.-..
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEEec
Confidence 88887654322222 22222244667889999999999999 66777899999999997553
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-25 Score=244.57 Aligned_cols=295 Identities=18% Similarity=0.283 Sum_probs=248.2
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC--CCeE
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN--DCII 309 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~--DGtI 309 (1491)
.+++.+.+..-.+.|.+|.|+++|.+|++++.|.+|+|||..+|+.++++..+.-.|..++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 45666777777889999999999999999999999999999999999999999999999999888777777776 8899
Q ss_pred EEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 310 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 310 rVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
+..++.+.+.++.|.||...|.+|+.+|-+. .+++++.|++|++||++..++...+..
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d---~FlS~S~D~tvrLWDlR~~~cqg~l~~------------------- 140 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD---TFLSSSLDKTVRLWDLRVKKCQGLLNL------------------- 140 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCC---eEEecccCCeEEeeEecCCCCceEEec-------------------
Confidence 9999999999999999999999999999987 899999999999999998877666532
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
..-..+||.|.|-++|++.....|++||++.... ++-..+.+.
T Consensus 141 ---~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk-----------------gPF~tf~i~----------------- 183 (311)
T KOG1446|consen 141 ---SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDK-----------------GPFTTFSIT----------------- 183 (311)
T ss_pred ---CCCcceeECCCCcEEEEecCCCeEEEEEecccCC-----------------CCceeEccC-----------------
Confidence 2345789999999999998888999999974210 000000000
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 549 (1491)
.+.....+.|.||
T Consensus 184 -------------------------------------------------------------------~~~~~ew~~l~FS 196 (311)
T KOG1446|consen 184 -------------------------------------------------------------------DNDEAEWTDLEFS 196 (311)
T ss_pred -------------------------------------------------------------------CCCccceeeeEEc
Confidence 0112345779999
Q ss_pred CCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCe---EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-CC
Q 000454 550 LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST---YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI-SR 625 (1491)
Q Consensus 550 PDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~V---tsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~-h~ 625 (1491)
|||++|+.++..+.+++.|.-+|..+.++.++...- -...|+| ++.++++|+.||+|.+|++.+|..+..+.+ +.
T Consensus 197 ~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~ 275 (311)
T KOG1446|consen 197 PDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNG 275 (311)
T ss_pred CCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCC
Confidence 999999999999999999999999999998876543 5678999 788999999999999999999999999998 57
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 626 FRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 626 ~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
+++.++.|.|.-.++|+++. .+.+|=..
T Consensus 276 ~~~~~~~fnP~~~mf~sa~s--~l~fw~p~ 303 (311)
T KOG1446|consen 276 GPVSCVRFNPRYAMFVSASS--NLVFWLPD 303 (311)
T ss_pred CCccccccCCceeeeeecCc--eEEEEecc
Confidence 78999999999888877765 67777554
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=280.01 Aligned_cols=295 Identities=19% Similarity=0.353 Sum_probs=219.2
Q ss_pred cccceeEEEEc-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec----------CCCCeEEEEEcC---
Q 000454 230 VQKMQNIKRVR-GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG----------HEGDITDLAVSS--- 295 (1491)
Q Consensus 230 v~t~k~v~tL~-GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~g----------H~~~VtsLafSP--- 295 (1491)
+......+.+. +|.++|+|+.||+||+|||+||.||.|+||.+........-.+ ..+.+..+..++
T Consensus 253 lsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~ 332 (712)
T KOG0283|consen 253 LSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKI 332 (712)
T ss_pred ceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccc
Confidence 34445556677 8999999999999999999999999999999875332111000 001111111111
Q ss_pred --CCCEEEEEECCCeEEEEECC----CCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceee
Q 000454 296 --NNALVASASNDCIIRVWRLP----DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1491)
Q Consensus 296 --DG~lLASGS~DGtIrVWDl~----tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~ 369 (1491)
.....-.+.....+. .... ..+++..|.||.+.|..|.|+.++ +|++++.|.+|++|++....|+..+.
T Consensus 333 ~~~~s~~~~~~~s~~~~-~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~----fLLSSSMDKTVRLWh~~~~~CL~~F~ 407 (712)
T KOG0283|consen 333 SSRTSSSRKGSQSPCVL-LPLKAFVFSEKPFCEFKGHTADILDLSWSKNN----FLLSSSMDKTVRLWHPGRKECLKVFS 407 (712)
T ss_pred cccccccccccCCcccc-CCCccccccccchhhhhccchhheecccccCC----eeEeccccccEEeecCCCcceeeEEe
Confidence 011122222222222 2221 247788999999999999999986 89999999999999999999888873
Q ss_pred cCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceE
Q 000454 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY 448 (1491)
Q Consensus 370 ~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~s 448 (1491)
|...|+|++|+| |.++|++|+-||.|+||++..
T Consensus 408 ---------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d------------------------- 441 (712)
T KOG0283|consen 408 ---------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD------------------------- 441 (712)
T ss_pred ---------------------cCCeeEEEEecccCCCcEeecccccceEEeecCc-------------------------
Confidence 888999999999 778999999999999999832
Q ss_pred EEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCC
Q 000454 449 VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528 (1491)
Q Consensus 449 VafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~ 528 (1491)
..|..|.
T Consensus 442 ------------------------------------------~~Vv~W~------------------------------- 448 (712)
T KOG0283|consen 442 ------------------------------------------KKVVDWN------------------------------- 448 (712)
T ss_pred ------------------------------------------CeeEeeh-------------------------------
Confidence 1233331
Q ss_pred CCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEe--CC------CCCeEEEEEecCCCcEEEE
Q 000454 529 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GH------TESTYVLDVHPFNPRIAMS 600 (1491)
Q Consensus 529 ~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~--gH------s~~VtsLafSPdd~~lLaS 600 (1491)
....-|++++|+|||++.++|+.+|.+++|++...++...+. .| ...|+.+.|.|....-|+.
T Consensus 449 ---------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 449 ---------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred ---------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 011358899999999999999999999999998877665442 11 2279999999966665667
Q ss_pred EeCCCcEEEEeCCCCceEEEEeeCCc--ceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 601 AGYDGKTIVWDIWEGIPIRIYEISRF--RLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 601 gS~DGtIrIWDl~tGk~l~~l~~h~~--~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
.+.|..|+|+|..+..++..|.+... .-....|+.||++|+++++|..|+||+...-
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 88899999999999999988886543 3346799999999999999999999998543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=246.53 Aligned_cols=291 Identities=20% Similarity=0.327 Sum_probs=252.8
Q ss_pred EEEccCCCCEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000454 237 KRVRGHRNAVYCAIFDR---SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1491)
Q Consensus 237 ~tL~GH~~~Vt~VaFSp---DG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWD 313 (1491)
.+..||+.+|..++||| +|-+|++++.||.-.+-+-+||.-+.+|.||.+.|+...++.+-...|+++.|-+.+|||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 46789999999999986 899999999999999999999999999999999999999999998999999999999999
Q ss_pred CCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCc
Q 000454 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1491)
Q Consensus 314 l~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1491)
.-+|..+..|. |...|.+++|+.|.. +|++|+.+..++|||+...+... ....+|.+
T Consensus 88 a~tgdelhsf~-hkhivk~~af~~ds~---~lltgg~ekllrvfdln~p~App-------------------~E~~ghtg 144 (334)
T KOG0278|consen 88 AVTGDELHSFE-HKHIVKAVAFSQDSN---YLLTGGQEKLLRVFDLNRPKAPP-------------------KEISGHTG 144 (334)
T ss_pred hhhhhhhhhhh-hhheeeeEEecccch---hhhccchHHHhhhhhccCCCCCc-------------------hhhcCCCC
Confidence 99999999998 999999999999987 89999999999999997554322 22356899
Q ss_pred ceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 394 ~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
.|..+.|....+.|++...|++||+||.+++. .+..+. ....|+++.++++|
T Consensus 145 ~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt---------~v~sL~-~~s~VtSlEvs~dG------------------ 196 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSADDKTVRLWDHRTGT---------EVQSLE-FNSPVTSLEVSQDG------------------ 196 (334)
T ss_pred cceeEEEeccCceEEeeccCCceEEEEeccCc---------EEEEEe-cCCCCcceeeccCC------------------
Confidence 99999999988999999999999999998743 333332 34578899999886
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1491)
.+++.+..+.|.+||..+-.. ......+..|.+..++|+..
T Consensus 197 ---------~ilTia~gssV~Fwdaksf~~------------------------------lKs~k~P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 197 ---------RILTIAYGSSVKFWDAKSFGL------------------------------LKSYKMPCNVESASLHPKKE 237 (334)
T ss_pred ---------CEEEEecCceeEEeccccccc------------------------------eeeccCccccccccccCCCc
Confidence 788888999999999886321 11223345688899999999
Q ss_pred EEEEEeccceEEEEECCCCceEEEE-eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000454 554 FVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl~tgkll~tL-~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l 618 (1491)
++++|+.|+.++.||..+|..+..+ ++|.++|.||.|+| ++.+.++|+.||+|+||.+..++..
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999999999986 99999999999999 7778889999999999998766543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=263.07 Aligned_cols=416 Identities=20% Similarity=0.320 Sum_probs=310.1
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCC---EEEEEeCCCeEEEEECCCC---------------------------------
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGR---YVITGSDDRLVKIWSMETA--------------------------------- 275 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~---~LATGS~DGtIrIWDl~Tg--------------------------------- 275 (1491)
+...+.++.||.+.|+|+.|-|+.. ++++|+.|+.|++|.+...
T Consensus 43 k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~ 122 (764)
T KOG1063|consen 43 KILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGT 122 (764)
T ss_pred cceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCce
Confidence 3356788999999999999999887 8889999998888866410
Q ss_pred -----------------------------------------------------------eEEEEEecCCCCeEEEEEcCC
Q 000454 276 -----------------------------------------------------------YCLASCRGHEGDITDLAVSSN 296 (1491)
Q Consensus 276 -----------------------------------------------------------~~l~tL~gH~~~VtsLafSPD 296 (1491)
+.+..+.||.+.|.+|+|...
T Consensus 123 v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~ 202 (764)
T KOG1063|consen 123 VSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL 202 (764)
T ss_pred EEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc
Confidence 112345689999999999875
Q ss_pred CC---EEEEEECCCeEEEEECCCCC---------------------ce----------eeeccCCCceEEEEecCCCCce
Q 000454 297 NA---LVASASNDCIIRVWRLPDGL---------------------PI----------SVLRGHTAAVTAIAFSPRPGSV 342 (1491)
Q Consensus 297 G~---lLASGS~DGtIrVWDl~tgk---------------------~i----------~~L~gHs~~VtsLaFSPdg~s~ 342 (1491)
+. +||++|.|..||||.+.-+. .. ..+.||...|+++.|+|.+.
T Consensus 203 ~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~-- 280 (764)
T KOG1063|consen 203 GGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL-- 280 (764)
T ss_pred CCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh--
Confidence 44 89999999999999863221 01 22459999999999999986
Q ss_pred EEEEEEeCCCcEEEEccCCC--CccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEe
Q 000454 343 YQLLSSSDDGTCRIWDARYS--QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420 (1491)
Q Consensus 343 ~~LaSgS~DGtVrIWDl~tg--~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWD 420 (1491)
.|++++.|.++.+|..... -.+....+ | ...+.....+.+.|+|+++.|++-+..|..++|.
T Consensus 281 -~LLSASaDksmiiW~pd~~tGiWv~~vRl--------G-------e~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk 344 (764)
T KOG1063|consen 281 -DLLSASADKSMIIWKPDENTGIWVDVVRL--------G-------EVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK 344 (764)
T ss_pred -hheecccCcceEEEecCCccceEEEEEEe--------e-------cccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence 7999999999999976644 22223222 1 1123455688999999999999999999999998
Q ss_pred CCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCC
Q 000454 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 500 (1491)
Q Consensus 421 l~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s 500 (1491)
.... ........+.||.+.|..|+|.|.| .+|++.+.|.+-|++-.-.
T Consensus 345 t~d~------~~w~~~~~iSGH~~~V~dv~W~psG--------------------------eflLsvs~DQTTRlFa~wg 392 (764)
T KOG1063|consen 345 TKDK------TFWTQEPVISGHVDGVKDVDWDPSG--------------------------EFLLSVSLDQTTRLFARWG 392 (764)
T ss_pred ccCc------cceeeccccccccccceeeeecCCC--------------------------CEEEEeccccceeeecccc
Confidence 3221 1234556678999999999999986 6999999999999984331
Q ss_pred CCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC---------
Q 000454 501 RRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD--------- 571 (1491)
Q Consensus 501 ~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t--------- 571 (1491)
.+ ..| ..+.+...|...++|++|-+....+++|.....+++|+...
T Consensus 393 ~q-----~~w--------------------HEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i 447 (764)
T KOG1063|consen 393 RQ-----QEW--------------------HEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAI 447 (764)
T ss_pred cc-----cce--------------------eeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHH
Confidence 11 112 23344556788889999888656677787888888887421
Q ss_pred ----------------------------------Cc---------------------------------eEEEEeCCCCC
Q 000454 572 ----------------------------------GS---------------------------------LVHSLTGHTES 584 (1491)
Q Consensus 572 ----------------------------------gk---------------------------------ll~tL~gHs~~ 584 (1491)
|. .++.+.||.-.
T Consensus 448 ~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyE 527 (764)
T KOG1063|consen 448 CGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYE 527 (764)
T ss_pred hCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCcee
Confidence 00 02345689999
Q ss_pred eEEEEEecCCCcEEEEEeCC-----CcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 000454 585 TYVLDVHPFNPRIAMSAGYD-----GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659 (1491)
Q Consensus 585 VtsLafSPdd~~lLaSgS~D-----GtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~ 659 (1491)
|++++.+| .+.++||++.. ..|++|+..+...+..+..|.-.|+.++|||||++|++.+.|.++.+|....+..
T Consensus 528 v~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~ 606 (764)
T KOG1063|consen 528 VYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK 606 (764)
T ss_pred EEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc
Confidence 99999999 78999998754 4699999999999999999999999999999999999999999999999744321
Q ss_pred cccccceeeecCCCcceEEccCCCEEEccccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEE
Q 000454 660 QKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAV 739 (1491)
Q Consensus 660 ~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAv 739 (1491)
... .| .|. ..++..+.++.|+||+.++|+
T Consensus 607 ~e~-----~f--------------------------------a~~--------------k~HtRIIWdcsW~pde~~FaT 635 (764)
T KOG1063|consen 607 DEF-----RF--------------------------------ACL--------------KAHTRIIWDCSWSPDEKYFAT 635 (764)
T ss_pred hhh-----hh--------------------------------ccc--------------cccceEEEEcccCcccceeEE
Confidence 110 00 000 014445666999999999999
Q ss_pred eeCCCCCCcEEeccCCCc--ccccc----CCcccccccccccCC
Q 000454 740 GPDFSLDQGYQLQPLADL--DVMID----PLPEFIDVMDWEPEN 777 (1491)
Q Consensus 740 g~d~s~d~~v~lw~~~~~--~~lie----plp~~i~~~~W~P~~ 777 (1491)
+ |.|..+.+|-..+. +++-+ +......++.|.|..
T Consensus 636 a---SRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~ 676 (764)
T KOG1063|consen 636 A---SRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVD 676 (764)
T ss_pred e---cCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccc
Confidence 9 99999999998776 44333 333455566666543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=251.88 Aligned_cols=300 Identities=21% Similarity=0.357 Sum_probs=240.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC---CEEEEEECCCeEEEEECCCCC
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN---ALVASASNDCIIRVWRLPDGL 318 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG---~lLASGS~DGtIrVWDl~tgk 318 (1491)
|.+.|.+|... +++|+||+.||+++|||.. |++.+++.||.++|.+++|.--+ ..|++++.|.++++|-++.+.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 89999999888 7899999999999999986 99999999999999998885433 369999999999999988774
Q ss_pred c----eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCcc--ceeecC---CCCCcccCCCCCCCCCCC
Q 000454 319 P----ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS--PRIYIP---RPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 319 ~----i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~--~~i~~~---~~~~~~~g~~~~~~~s~~ 389 (1491)
. +....||...|.+|...+++. .+++|+.|.+|.||+....... ...... .......+....+.....
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgt---r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGT---RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCC---eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 3 344569999999999999998 9999999999999993322110 000000 000011123344556678
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
+|...|.++.|++ ...+++++.|.+|++||+.++. .+..+.+ ...+.++..+|..
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~---------~~~~~~~-~ksl~~i~~~~~~-------------- 312 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG---------LKSTLTT-NKSLNCISYSPLS-------------- 312 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeeccc---------ceeeeec-CcceeEeeccccc--------------
Confidence 8999999999988 6789999999999999998743 2333322 3467788888753
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 549 (1491)
.+|++|+.|..|++||++++.. ....+.+.+|...|.++.|+
T Consensus 313 ------------~Ll~~gssdr~irl~DPR~~~g--------------------------s~v~~s~~gH~nwVssvkws 354 (423)
T KOG0313|consen 313 ------------KLLASGSSDRHIRLWDPRTGDG--------------------------SVVSQSLIGHKNWVSSVKWS 354 (423)
T ss_pred ------------ceeeecCCCCceeecCCCCCCC--------------------------ceeEEeeecchhhhhheecC
Confidence 6899999999999999997431 13346678999999999999
Q ss_pred CCCCE-EEEEeccceEEEEECCCCc-eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 550 LDNRF-VLAAIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 550 PDG~~-LaSGs~DG~IrIWDl~tgk-ll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
|...+ |++|+.|+++++||+++.+ ++..+.+|.+.|.++.|.. +.++++||.|.+|+|+.-
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceEEeccCcceEEEecc
Confidence 97765 7789999999999999887 9999999999999999974 678889999999999864
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=258.37 Aligned_cols=301 Identities=21% Similarity=0.311 Sum_probs=233.6
Q ss_pred eeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCe
Q 000454 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA----YCLASCR-GHEGDITDLAVSSNNALVASASNDCI 308 (1491)
Q Consensus 234 k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg----~~l~tL~-gH~~~VtsLafSPDG~lLASGS~DGt 308 (1491)
.+-..|.+|+..|.++++.|.|-+|++|+.|.+|++||+... +..+.|. .-...|.++.|++.|..|++.+....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 344578999999999999999999999999999999999743 2222222 23557999999999998888888889
Q ss_pred EEEEECCCCCce-------------eeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCC
Q 000454 309 IRVWRLPDGLPI-------------SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1491)
Q Consensus 309 IrVWDl~tgk~i-------------~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~ 375 (1491)
++|+|- .|..+ ..-+||...++|.+|+|+.+ ..|++++.||+++|||+...+....++.+.
T Consensus 238 akl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k--~~FlT~s~DgtlRiWdv~~~k~q~qVik~k--- 311 (641)
T KOG0772|consen 238 AKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK--EEFLTCSYDGTLRIWDVNNTKSQLQVIKTK--- 311 (641)
T ss_pred eeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcc--cceEEecCCCcEEEEecCCchhheeEEeec---
Confidence 999994 44332 22358999999999999976 379999999999999998766444333222
Q ss_pred cccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCC--CceEEEEcc
Q 000454 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN--DVNYVQFSG 453 (1491)
Q Consensus 376 ~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~--~V~sVafSp 453 (1491)
...+..-.++.|+|++||++||+|+.||.|.+|+..... ....+..-.+|.. .|++|.|++
T Consensus 312 -----------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~------v~p~~~vk~AH~~g~~Itsi~FS~ 374 (641)
T KOG0772|consen 312 -----------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT------VRPVMKVKDAHLPGQDITSISFSY 374 (641)
T ss_pred -----------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc------cccceEeeeccCCCCceeEEEecc
Confidence 123456678999999999999999999999999985421 1234455567877 999999999
Q ss_pred CccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000454 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1491)
Q Consensus 454 dg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (1491)
+| ++|++-+.|+++++||++..+... ..
T Consensus 375 dg--------------------------~~LlSRg~D~tLKvWDLrq~kkpL--~~------------------------ 402 (641)
T KOG0772|consen 375 DG--------------------------NYLLSRGFDDTLKVWDLRQFKKPL--NV------------------------ 402 (641)
T ss_pred cc--------------------------chhhhccCCCceeeeeccccccch--hh------------------------
Confidence 87 799999999999999999643110 00
Q ss_pred eeccCCCCCeeEEEEcCCCCEEEEEe------ccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 000454 534 QRILPTPRGVNMIVWSLDNRFVLAAI------MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKT 607 (1491)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs------~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtI 607 (1491)
..-+.....-+.++|||+.++|++|+ ..|.+++||..+...+..+.-....|..+.|||--..++ .|+.||++
T Consensus 403 ~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~-~gsgdG~~ 481 (641)
T KOG0772|consen 403 RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF-AGSGDGTA 481 (641)
T ss_pred hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee-eecCCCce
Confidence 01112334457789999999999975 357899999999999999987788899999999544454 57778998
Q ss_pred EEE
Q 000454 608 IVW 610 (1491)
Q Consensus 608 rIW 610 (1491)
+||
T Consensus 482 ~vy 484 (641)
T KOG0772|consen 482 HVY 484 (641)
T ss_pred EEE
Confidence 876
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=278.26 Aligned_cols=297 Identities=21% Similarity=0.344 Sum_probs=243.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEe--CCCeEEEEECCC------------CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 000454 242 HRNAVYCAIFDRSGRYVITGS--DDRLVKIWSMET------------AYCLASCRGHEGDITDLAVSSNNALVASASNDC 307 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS--~DGtIrIWDl~T------------g~~l~tL~gH~~~VtsLafSPDG~lLASGS~DG 307 (1491)
+...|++|..+|||..+|||+ .||.++||+... .+.+.++..|.+.|.|+.|+|||++||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345699999999999999999 899999998742 245667778999999999999999999999999
Q ss_pred eEEEEECCC------------------CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceee
Q 000454 308 IIRVWRLPD------------------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1491)
Q Consensus 308 tIrVWDl~t------------------gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~ 369 (1491)
.|.||.... .+.+..+.+|...|..++|+|++. +|++++.|++|.||+..+.+.+.++
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~---~lvS~s~DnsViiwn~~tF~~~~vl- 167 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS---LLVSVSLDNSVIIWNAKTFELLKVL- 167 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc---EEEEecccceEEEEccccceeeeee-
Confidence 999998762 135678899999999999999987 9999999999999999988766665
Q ss_pred cCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEE
Q 000454 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449 (1491)
Q Consensus 370 ~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sV 449 (1491)
.+|...|..+.|.|-|++||+-+.|++|+||++.+ +.....+..+...
T Consensus 168 -------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d---------w~i~k~It~pf~~---- 215 (942)
T KOG0973|consen 168 -------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD---------WGIEKSITKPFEE---- 215 (942)
T ss_pred -------------------ecccccccceEECCccCeeeeecCCceEEEEEccc---------ceeeEeeccchhh----
Confidence 45899999999999999999999999999999743 1111111111100
Q ss_pred EEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCC
Q 000454 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1491)
Q Consensus 450 afSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~ 529 (1491)
T Consensus 216 -------------------------------------------------------------------------------- 215 (942)
T KOG0973|consen 216 -------------------------------------------------------------------------------- 215 (942)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeccCCCCCeeEEEEcCCCCEEEEEe----ccceEEEEECCCCceEEEEeCCCCCeEEEEEecC------C-----
Q 000454 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAI----MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPF------N----- 594 (1491)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~LaSGs----~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPd------d----- 594 (1491)
.+....+..+.|||||.+|++.. .-.++.|.+-.+.+.-..|-||.+++.++.|+|. .
T Consensus 216 -------~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~ 288 (942)
T KOG0973|consen 216 -------SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST 288 (942)
T ss_pred -------CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence 00112356688999999999853 2336899999888988999999999999999982 1
Q ss_pred -C----cEEEEEeCCCcEEEEeCCCCceEEEEe-eCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 000454 595 -P----RIAMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1491)
Q Consensus 595 -~----~lLaSgS~DGtIrIWDl~tGk~l~~l~-~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~ 661 (1491)
+ .++|+|+.|++|-||.....+++.... .....|.+++|+|||..|++++.||.|.++.+...+.-.
T Consensus 289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGV 361 (942)
T ss_pred CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence 1 178999999999999998888776554 235589999999999999999999999999998776533
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=243.36 Aligned_cols=295 Identities=15% Similarity=0.231 Sum_probs=245.7
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEcc
Q 000454 280 SCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359 (1491)
Q Consensus 280 tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl 359 (1491)
.+.||..+++.|.|+.+|.+|++++.|.++.||--.+|+.+.++.||++.|+|+...-+.+ .|++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~---~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSK---HLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcc---eeeeccccceeEEEEc
Confidence 3678999999999999999999999999999999889999999999999999999999887 9999999999999999
Q ss_pred CCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-----CceEEEEeCCCCCCCCCCCCCc
Q 000454 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-----DTLARVWNACKPNTDDSDQPNH 434 (1491)
Q Consensus 360 ~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-----DG~IrVWDl~t~~~~~s~~~~~ 434 (1491)
.+|+++..+. ....|..+.|+++|++++.... .+.|.++|++..... .....
T Consensus 82 ~tGk~la~~k---------------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~--~~s~e 138 (327)
T KOG0643|consen 82 ETGKQLATWK---------------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD--IDSEE 138 (327)
T ss_pred CCCcEEEEee---------------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh--hcccC
Confidence 9999888874 3567999999999998887654 468999999753321 11234
Q ss_pred eeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccc
Q 000454 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1491)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1491)
++..+..+...++.+.|.|.+ +.|++|..||.|.+||+++++..
T Consensus 139 p~~kI~t~~skit~a~Wg~l~--------------------------~~ii~Ghe~G~is~~da~~g~~~---------- 182 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGPLG--------------------------ETIIAGHEDGSISIYDARTGKEL---------- 182 (327)
T ss_pred ceEEecCCccceeeeeecccC--------------------------CEEEEecCCCcEEEEEcccCcee----------
Confidence 467777888999999999875 79999999999999999975421
Q ss_pred ccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCC
Q 000454 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594 (1491)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd 594 (1491)
+.....|...|+.+++++|..++++++.|.+-++||+.+-++++++. -..+|++.+++|..
T Consensus 183 ------------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 183 ------------------VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLL 243 (327)
T ss_pred ------------------eechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceeccccc
Confidence 22234577789999999999999999999999999999999999987 35689999999966
Q ss_pred CcEEEEEeCCCc-------------EEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 595 PRIAMSAGYDGK-------------TIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 595 ~~lLaSgS~DGt-------------IrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
..+++-||.+.. .++|++-..+.+..+++|-++|.+++|+|||+..++|+.||.|+|.-+.
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 666655554321 1233333345667788999999999999999999999999999998653
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-26 Score=258.17 Aligned_cols=289 Identities=22% Similarity=0.318 Sum_probs=240.8
Q ss_pred eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 000454 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 235 ~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~--~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVW 312 (1491)
....+..|.+.|..+.|-++...|+||+.|..|++|++...+ .+.+|.|..+.|+++.|.+++..+++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 345788899999999999999999999999999999997666 677888999999999999999999999999999999
Q ss_pred ECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 313 Dl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
++...+...+|.+|+..|+++.|..... .+++|+.|.+|++||+....|...+.. .
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~~---~vVsgs~DRtiK~WDl~k~~C~kt~l~---------------------~ 302 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSHS---RVVSGSADRTIKLWDLQKAYCSKTVLP---------------------G 302 (459)
T ss_pred eccchhhhhhhcccccceeeehhhcccc---ceeeccccchhhhhhhhhhheeccccc---------------------c
Confidence 9999999999999999999999998765 699999999999999998887766532 2
Q ss_pred cceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCc
Q 000454 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1491)
Q Consensus 393 ~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1491)
..+..|+.+ +..+++|-.|+.|++||+++. ........+. .|+++..++++
T Consensus 303 S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~---------~~~~sv~~gg-~vtSl~ls~~g----------------- 353 (459)
T KOG0288|consen 303 SQCNDIVCS--ISDVISGHFDKKVRFWDIRSA---------DKTRSVPLGG-RVTSLDLSMDG----------------- 353 (459)
T ss_pred ccccceEec--ceeeeecccccceEEEeccCC---------ceeeEeecCc-ceeeEeeccCC-----------------
Confidence 334555554 567889999999999999763 3455555554 89999999886
Q ss_pred cccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC
Q 000454 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1491)
Q Consensus 473 ~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 552 (1491)
..|++++.|.++.+.|+++....... . .. -.......+.++|||++
T Consensus 354 ---------~~lLsssRDdtl~viDlRt~eI~~~~-------s----------------A~--g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 354 ---------LELLSSSRDDTLKVIDLRTKEIRQTF-------S----------------AE--GFKCASDWTRVVFSPDG 399 (459)
T ss_pred ---------eEEeeecCCCceeeeecccccEEEEe-------e----------------cc--ccccccccceeEECCCC
Confidence 57888899999999999974321100 0 00 01122337889999999
Q ss_pred CEEEEEeccceEEEEECCCCceEEEEeCCCC--CeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTE--STYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 553 ~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~--~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
.|+++|+.||.|+||++.++++...+..... .|++++|+| .+..|++++.++.+.+|.
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEecC
Confidence 9999999999999999999999998876555 499999999 667777999999999993
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=254.31 Aligned_cols=374 Identities=17% Similarity=0.251 Sum_probs=282.2
Q ss_pred ccceeEEEEccCCCCEEEEEEcCCCC---EEEEEeCCCeEEEEECCCCe---------------------EEE-------
Q 000454 231 QKMQNIKRVRGHRNAVYCAIFDRSGR---YVITGSDDRLVKIWSMETAY---------------------CLA------- 279 (1491)
Q Consensus 231 ~t~k~v~tL~GH~~~Vt~VaFSpDG~---~LATGS~DGtIrIWDl~Tg~---------------------~l~------- 279 (1491)
.+++.+..|.||.+.|..|+|...+. +||++|.|..|+||.+.-+. .+.
T Consensus 179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence 47889999999999999999998665 89999999999999874221 111
Q ss_pred ---EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCc-------eeeeccCCCceEEEEecCCCCceEEEEEEe
Q 000454 280 ---SCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP-------ISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349 (1491)
Q Consensus 280 ---tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~-------i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS 349 (1491)
.+.||.+.|.++.|+|.+..|++++.|.++.||...+..- +..+.+..+..++..|+|++. .+++-+
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~---~ii~~g 335 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN---VIIAHG 335 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC---EEEEec
Confidence 2349999999999999999999999999999998654421 222334556789999999987 899999
Q ss_pred CCCcEEEEccCC-CCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCC
Q 000454 350 DDGTCRIWDARY-SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDD 428 (1491)
Q Consensus 350 ~DGtVrIWDl~t-g~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~ 428 (1491)
..|..++|.... ....+ .....+|...|..++|.|.|.+|++.+.|.+-|||-.-.
T Consensus 336 ~~Gg~hlWkt~d~~~w~~------------------~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg----- 392 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKTFWTQ------------------EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG----- 392 (764)
T ss_pred ccCcEEEEeccCccceee------------------ccccccccccceeeeecCCCCEEEEeccccceeeecccc-----
Confidence 999999998221 11111 223467899999999999999999999999999987641
Q ss_pred CCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCC------
Q 000454 429 SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR------ 502 (1491)
Q Consensus 429 s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k------ 502 (1491)
..+...++..-.-|...++|+++-+. .-.|++|.....+|+|+....-
T Consensus 393 ~q~~wHEiaRPQiHGyDl~c~~~vn~--------------------------~~~FVSgAdEKVlRvF~aPk~fv~~l~~ 446 (764)
T KOG1063|consen 393 RQQEWHEIARPQIHGYDLTCLSFVNE--------------------------DLQFVSGADEKVLRVFEAPKSFVKSLMA 446 (764)
T ss_pred cccceeeecccccccccceeeehccC--------------------------CceeeecccceeeeeecCcHHHHHHHHH
Confidence 12236677777889999999999863 1378888888888888654210
Q ss_pred -----CCcc----ccccccccccC--------------------CC----CCCCCCCC--------CCCCCceeccCCCC
Q 000454 503 -----SHPK----AARWTQAYHLK--------------------VP----PPPMPPQP--------PRGGPRQRILPTPR 541 (1491)
Q Consensus 503 -----~~~~----~~~~~~~~~l~--------------------~~----~~~~~~~~--------~~~~~~~~l~~h~~ 541 (1491)
.... .......+.+. .+ +..+...+ ..-....++.+|..
T Consensus 447 i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGy 526 (764)
T KOG1063|consen 447 ICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGY 526 (764)
T ss_pred HhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCce
Confidence 0000 00000000000 00 00000000 01123456789999
Q ss_pred CeeEEEEcCCCCEEEEEecc-----ceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc
Q 000454 542 GVNMIVWSLDNRFVLAAIMD-----CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616 (1491)
Q Consensus 542 ~VtsVafSPDG~~LaSGs~D-----G~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk 616 (1491)
.|.+++.+|+|+++|+++.. ..|++|+..+...++.+.+|.-.|+.|+|+| ++++|++++.|.++.+|......
T Consensus 527 Ev~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred eEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeeccc
Confidence 99999999999999998854 3599999999999999999999999999999 78899999999999999885432
Q ss_pred ----eEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 617 ----PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 617 ----~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
.....+.|..-|+++.|+||+.++|+++.|..|.||....+
T Consensus 606 ~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 606 KDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred chhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 23345667778999999999999999999999999999877
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=233.36 Aligned_cols=285 Identities=19% Similarity=0.284 Sum_probs=241.2
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE--EecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEE
Q 000454 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS--CRGHEGDITDLAVSS-NNALVASASNDCIIRVWR 313 (1491)
Q Consensus 237 ~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~t--L~gH~~~VtsLafSP-DG~lLASGS~DGtIrVWD 313 (1491)
+.+++|...|.+|+|+.+|..||+|+.|+++.||++...+.+.. .++|.+.|-.++|+| ...+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 67889999999999999999999999999999999988765554 468999999999998 556999999999999999
Q ss_pred CCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCc
Q 000454 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1491)
Q Consensus 314 l~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1491)
+..++++..+....+.| -+.|+|++. ++++++.|..|.+.|.++.+...... ...
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~---~~~~~~kdD~it~id~r~~~~~~~~~---------------------~~~ 148 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGE---YIAVGNKDDRITFIDARTYKIVNEEQ---------------------FKF 148 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCC---EEEEecCcccEEEEEecccceeehhc---------------------ccc
Confidence 99999999887554444 588999998 99999999999999998876554432 345
Q ss_pred ceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 394 ~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
.+.-++|+-++.+|+.....|.|.|..... .+++..+.+|...+.||.|+|+|
T Consensus 149 e~ne~~w~~~nd~Fflt~GlG~v~ILsyps---------Lkpv~si~AH~snCicI~f~p~G------------------ 201 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNGLGCVEILSYPS---------LKPVQSIKAHPSNCICIEFDPDG------------------ 201 (313)
T ss_pred eeeeeeecCCCCEEEEecCCceEEEEeccc---------cccccccccCCcceEEEEECCCC------------------
Confidence 577889988888888777789999988743 56788899999999999999997
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1491)
.+|++|+.|..+.+||+... -+...+..+.-+|..+.||.||+
T Consensus 202 --------ryfA~GsADAlvSLWD~~EL-----------------------------iC~R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 202 --------RYFATGSADALVSLWDVDEL-----------------------------ICERCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred --------ceEeeccccceeeccChhHh-----------------------------hhheeeccccCceEEEEeccCcc
Confidence 79999999999999998841 22344555678899999999999
Q ss_pred EEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCC---------CcEEEEeC
Q 000454 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD---------GKTIVWDI 612 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~D---------GtIrIWDl 612 (1491)
+||+|+.|..|-|=++.+|..+..+. +.++.+.|+||| ...+||-++.| |.|+||-+
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecCCCCccccccceeEEecC
Confidence 99999999999999999999999987 788899999999 56666666543 56666654
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=259.40 Aligned_cols=384 Identities=18% Similarity=0.240 Sum_probs=292.4
Q ss_pred CccccccCCCcceeee---ccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeEEEE
Q 000454 205 GGFTRHHRAPSIRAAC---YAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRY-VITGSDDRLVKIWSMETAYCLAS 280 (1491)
Q Consensus 205 g~~~~~~~~~sl~s~~---~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~-LATGS~DGtIrIWDl~Tg~~l~t 280 (1491)
..++....+|-+..++ -+..+..-.+...+.+.+++.-.+.|+.++|.-||.. +|+|+..|.+.+||++..+.+..
T Consensus 203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 203 SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV 282 (910)
T ss_pred cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee
Confidence 4455555555544333 2333344556667888888855699999999999985 46777779999999998888887
Q ss_pred Ee-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000454 281 CR-GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG----LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 281 L~-gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg----k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVr 355 (1491)
++ .|.+.|..+.|.|....|++++.|..+++|=..++ +.++.-.||..+..+|.|.-... +.+++++.|++++
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g--~~ilsa~~Drt~r 360 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQG--HFILSAKQDRTLR 360 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCc--EEEEecccCcchh
Confidence 76 79999999999999999999999999999855543 45666679999999999985432 4899999999999
Q ss_pred EEccCCCCccceeec---CC---------------CCC-ccc--------------------------------CCCCCC
Q 000454 356 IWDARYSQFSPRIYI---PR---------------PSD-AVA--------------------------------GRNMAP 384 (1491)
Q Consensus 356 IWDl~tg~~~~~i~~---~~---------------~~~-~~~--------------------------------g~~~~~ 384 (1491)
.+++......+.+.. .. +.. ... |.....
T Consensus 361 ~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~ 440 (910)
T KOG1539|consen 361 SFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD 440 (910)
T ss_pred hhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEec
Confidence 887643221111100 00 000 000 000001
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~ 464 (1491)
..........+++++.++.|++.+.|+..|.|-+|++.++-. ......-..|.+.|++++....
T Consensus 441 ~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~------r~sf~~~~ah~~~V~gla~D~~---------- 504 (910)
T KOG1539|consen 441 PKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH------RKSFGDSPAHKGEVTGLAVDGT---------- 504 (910)
T ss_pred CccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee------ecccccCccccCceeEEEecCC----------
Confidence 111122346789999999999999999999999999976421 1112223689999999998754
Q ss_pred CCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCee
Q 000454 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVN 544 (1491)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vt 544 (1491)
+..+++++.+|-+.+||+..... .....-...++
T Consensus 505 ----------------n~~~vsa~~~Gilkfw~f~~k~l------------------------------~~~l~l~~~~~ 538 (910)
T KOG1539|consen 505 ----------------NRLLVSAGADGILKFWDFKKKVL------------------------------KKSLRLGSSIT 538 (910)
T ss_pred ----------------CceEEEccCcceEEEEecCCcce------------------------------eeeeccCCCcc
Confidence 36899999999999999986321 11122344677
Q ss_pred EEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeC
Q 000454 545 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1491)
Q Consensus 545 sVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h 624 (1491)
++.++.....++++..|-.|+++|+.+.+.++.|.||.+.|++++||| ++++|++++.|++|++||+.++.++..+. -
T Consensus 539 ~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~-v 616 (910)
T KOG1539|consen 539 GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLL-V 616 (910)
T ss_pred eeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEe-c
Confidence 888888889999999999999999999999999999999999999999 78899999999999999999999999887 4
Q ss_pred CcceEEEEEcCCCCEEEEEeCC-CcEEEEEC
Q 000454 625 RFRLVDGKFSPDGASIILSDDV-GQLYILNT 654 (1491)
Q Consensus 625 ~~~VtslafSPDG~~LAsgs~D-G~I~IWdl 654 (1491)
..+++.+.|||+|.+||++..| ..|++|.-
T Consensus 617 d~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 617 DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 5688999999999999999777 68999974
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=231.54 Aligned_cols=287 Identities=20% Similarity=0.243 Sum_probs=241.2
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCcee--eeccCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000454 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS--VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 279 ~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~--~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrI 356 (1491)
+.+++|...|.+|+|+.+|..||+|+.|+++.||++...+... ...+|.+.|-.++|+|... ..|++++.|.+|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~--d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP--DLFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC--cceEEecCCceEEE
Confidence 4567899999999999999999999999999999998775544 3468999999999999765 38999999999999
Q ss_pred EccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCcee
Q 000454 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1491)
Q Consensus 357 WDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1491)
||++.+++...+.. ...=.-++|+|+|.++++++.|..|.+.|.++.+..
T Consensus 92 wd~r~~k~~~~i~~---------------------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~--------- 141 (313)
T KOG1407|consen 92 WDIRSGKCTARIET---------------------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIV--------- 141 (313)
T ss_pred EEeccCcEEEEeec---------------------cCcceEEEEcCCCCEEEEecCcccEEEEEeccccee---------
Confidence 99999998887742 223356889999999999999999999999864321
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccccc
Q 000454 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1491)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1491)
.-....-.+..+.|... +++|+.....|+|.|.....
T Consensus 142 -~~~~~~~e~ne~~w~~~--------------------------nd~Fflt~GlG~v~ILsyps---------------- 178 (313)
T KOG1407|consen 142 -NEEQFKFEVNEISWNNS--------------------------NDLFFLTNGLGCVEILSYPS---------------- 178 (313)
T ss_pred -ehhcccceeeeeeecCC--------------------------CCEEEEecCCceEEEEeccc----------------
Confidence 11222334566677633 46778778889999875443
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCc
Q 000454 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1491)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~ 596 (1491)
..++..+..|+....||.|+|+|++||+|+.|..+-+||+..--+++.+.-+.-+|..|.|+- +++
T Consensus 179 -------------Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~ 244 (313)
T KOG1407|consen 179 -------------LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGR 244 (313)
T ss_pred -------------cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccc
Confidence 245677788999999999999999999999999999999999999999999999999999998 889
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCC---------CcEEEEECC
Q 000454 597 IAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDV---------GQLYILNTG 655 (1491)
Q Consensus 597 lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~D---------G~I~IWdl~ 655 (1491)
+||+|+.|..|-|=++.+|..+..++ +.++...++|+|...+||.+++| |.|+||.+.
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 99999999999999999999999998 67889999999999999977543 677777654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-22 Score=242.47 Aligned_cols=437 Identities=16% Similarity=0.138 Sum_probs=305.2
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEEecC-CCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000454 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-CLASCRGH-EGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 237 ~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~-~l~tL~gH-~~~VtsLafSPDG~lLASGS~DGtIrVWDl 314 (1491)
+.+.--...|+|+||+.+.+.||.+-.+|.|-||++..+- +...+.++ ...|.+++|+ ++..|++.+.+|.|.-||+
T Consensus 19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence 3444456899999999999999999999999999998653 44556655 5689999999 4557888889999999999
Q ss_pred CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
.+++++..+....+.|++++.+|.+. .++.|+.||.+.++++..+.......+ ....+.
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~---~l~IgcddGvl~~~s~~p~~I~~~r~l------------------~rq~sR 156 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENT---ILAIGCDDGVLYDFSIGPDKITYKRSL------------------MRQKSR 156 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccc---eEEeecCCceEEEEecCCceEEEEeec------------------ccccce
Confidence 99999999999999999999999987 899999999888888877765444322 224678
Q ss_pred eEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeec-CCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS-GHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~-gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
|.+++|+|++..|++|+.||.|++||+.++.... .... .+..+. +...-|++|.|-.+
T Consensus 157 vLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-~~~~-~~d~l~k~~~~iVWSv~~Lrd------------------- 215 (691)
T KOG2048|consen 157 VLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-IITM-QLDRLSKREPTIVWSVLFLRD------------------- 215 (691)
T ss_pred EEEEEecCCccEEEecccCceEEEEEcCCCceEE-Eeee-cccccccCCceEEEEEEEeec-------------------
Confidence 9999999999999999999999999997653211 0000 011111 12334666666644
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1491)
..|++|..-|+|.+||...+. ..+....|...|.+++..+++.
T Consensus 216 --------~tI~sgDS~G~V~FWd~~~gT-----------------------------LiqS~~~h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 216 --------STIASGDSAGTVTFWDSIFGT-----------------------------LIQSHSCHDADVLALAVADNED 258 (691)
T ss_pred --------CcEEEecCCceEEEEcccCcc-----------------------------hhhhhhhhhcceeEEEEcCCCC
Confidence 489999999999999988633 3444567888999999999999
Q ss_pred EEEEEeccceEEEEECCCCce----EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC----------------
Q 000454 554 FVLAAIMDCRICVWNAADGSL----VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW---------------- 613 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl~tgkl----l~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~---------------- 613 (1491)
+|++++.|+.|..|...+... ......|...|.+++..+ ..+++||.|..+.+-...
T Consensus 259 ~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~---~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~ 335 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE---NALISGGRDFTLAICSSREFKNMDHRQKNLFPAS 335 (691)
T ss_pred eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec---ceEEecceeeEEEEccccccCchhhhcccccccc
Confidence 999999999999998766533 123356888888888876 277777777665543221
Q ss_pred --------------------------CC---------ceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 000454 614 --------------------------EG---------IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 658 (1491)
Q Consensus 614 --------------------------tG---------k~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~ 658 (1491)
+. .+++.+......|.+.+.||||++||.+.- ..++||.+....
T Consensus 336 ~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~ 414 (691)
T KOG2048|consen 336 DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDP 414 (691)
T ss_pred ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCc
Confidence 11 011112223446888999999999998875 456777765432
Q ss_pred cccc-----------ccceeeecCCCcceEEcc-CCCEEE---ccccccCccccCCCccccccCCCCCCcchhhhhhccc
Q 000454 659 SQKD-----------AKYDQFFLGDYRPLVQDT-YGNVLD---QETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRL 723 (1491)
Q Consensus 659 ~~~~-----------~~~~~~fs~D~r~La~d~-~G~vLd---e~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~ 723 (1491)
.++. -.....|.-|...++..+ +..-|. .++..--++-.+++. .--.
T Consensus 415 ~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~------------------~~~~ 476 (691)
T KOG2048|consen 415 NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ------------------AKCP 476 (691)
T ss_pred ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc------------------cCCC
Confidence 2111 113335555665554444 211111 122221222221111 1122
Q ss_pred ccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCccc--cccCCcccccccccccCCc
Q 000454 724 GALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDV--MIDPLPEFIDVMDWEPENE 778 (1491)
Q Consensus 724 ~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~~~--lieplp~~i~~~~W~P~~e 778 (1491)
.+..++-||||.|||+. +..+.|.+|++.+.++ +..-++..++.+...|+.-
T Consensus 477 ~I~~l~~SsdG~yiaa~---~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~ 530 (691)
T KOG2048|consen 477 SISRLVVSSDGNYIAAI---STRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVR 530 (691)
T ss_pred cceeEEEcCCCCEEEEE---eccceEEEEEcccceeecchhccCcceeeeecccccc
Confidence 35568999999999999 7889999999987752 2223445666677776554
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-25 Score=240.96 Aligned_cols=296 Identities=24% Similarity=0.429 Sum_probs=252.3
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrV 311 (1491)
.+++++.|.||.+.|+.|+.......+.+++.|.+.+||.+++|.|+.++.||.+.|.+|.|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 46778899999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred EEC------CC------------------------------C----CceeeeccCCCceEEEEecCCCCceEEEEEEeCC
Q 000454 312 WRL------PD------------------------------G----LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 351 (1491)
Q Consensus 312 WDl------~t------------------------------g----k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D 351 (1491)
|.. .. + .++..|.+|.+.|.+..|...+. .+++++.|
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~---Q~vTaSWD 293 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ---QMVTASWD 293 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc---eeeeeecc
Confidence 962 11 0 23556789999999999999887 89999999
Q ss_pred CcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCC
Q 000454 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1491)
Q Consensus 352 GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~ 431 (1491)
.+..+||++++..+..+ .+|....+.++-+|..+++++.+.|.+.++||++.
T Consensus 294 RTAnlwDVEtge~v~~L--------------------tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-------- 345 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNIL--------------------TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-------- 345 (481)
T ss_pred ccceeeeeccCceeccc--------------------cCcchhccccccCCcceEEEEeccCceeEeccchh--------
Confidence 99999999999876655 56888999999999999999999999999999973
Q ss_pred CCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccc
Q 000454 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1491)
Q Consensus 432 ~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~ 511 (1491)
....+..+.||...|+++.|.-+ +.+++|+.|.+|++||+++.+.
T Consensus 346 aI~sV~VFQGHtdtVTS~vF~~d---------------------------d~vVSgSDDrTvKvWdLrNMRs-------- 390 (481)
T KOG0300|consen 346 AIQSVAVFQGHTDTVTSVVFNTD---------------------------DRVVSGSDDRTVKVWDLRNMRS-------- 390 (481)
T ss_pred hcceeeeecccccceeEEEEecC---------------------------CceeecCCCceEEEeeeccccC--------
Confidence 25578889999999999999865 5899999999999999997431
Q ss_pred cccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEE-----EeCCCCCeE
Q 000454 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS-----LTGHTESTY 586 (1491)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~t-----L~gHs~~Vt 586 (1491)
++. .+....+++.++.+..+..|+.--.+..|++||+... .+.. -.+|...|+
T Consensus 391 --------------------plA-TIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrtsRqgHrRMV~ 448 (481)
T KOG0300|consen 391 --------------------PLA-TIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLARLPRTSRQGHRRMVT 448 (481)
T ss_pred --------------------cce-eeecCCccceeEeecCCceEEeccCCceEEEEecCCC-ccccCCcccccccceeee
Confidence 111 1234567888999999889999888999999999643 3333 358999999
Q ss_pred EEEEecCCC-cEEEEEeCCCcEEEEeCCCC
Q 000454 587 VLDVHPFNP-RIAMSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 587 sLafSPdd~-~lLaSgS~DGtIrIWDl~tG 615 (1491)
|++|....+ .-|++||.|..+.-|.+...
T Consensus 449 c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 449 CCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeccccCcccccccccccceeeeeEeccc
Confidence 999975322 34669999999999998653
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=247.85 Aligned_cols=297 Identities=19% Similarity=0.311 Sum_probs=242.5
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE----E-------------E-ecCCCCeEEEEEcCCC
Q 000454 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA----S-------------C-RGHEGDITDLAVSSNN 297 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~----t-------------L-~gH~~~VtsLafSPDG 297 (1491)
++.+..|.-+|+||+++|+++++++++.+|+|.=|++.+|+... . - ++|...|.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 56788899999999999999999999999999999998886431 1 1 2788999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcc
Q 000454 298 ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1491)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~ 377 (1491)
+|||+|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.... .|++++.|+.|++|++.....+.++
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~---~lys~s~Drsvkvw~~~~~s~vetl--------- 282 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTS---ELYSASADRSVKVWSIDQLSYVETL--------- 282 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCcc---ceeeeecCCceEEEehhHhHHHHHH---------
Confidence 9999999999999999999999999999999999999988765 8999999999999999877766665
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccc
Q 000454 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVA 457 (1491)
Q Consensus 378 ~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~a 457 (1491)
.+|...|..+....-++.+.+|+.|.++++|++. ......+.+|.+.+.|++|-.+
T Consensus 283 -----------yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~----------eesqlifrg~~~sidcv~~In~--- 338 (479)
T KOG0299|consen 283 -----------YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP----------EESQLIFRGGEGSIDCVAFIND--- 338 (479)
T ss_pred -----------hCCccceeeechhcccceEEeccccceeEEEecc----------ccceeeeeCCCCCeeeEEEecc---
Confidence 4588999999999899999999999999999994 2344567888999999999865
Q ss_pred cccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceecc
Q 000454 458 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1491)
Q Consensus 458 s~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1491)
..|++||.+|.|.+|++...+.... ......+ .+.....
T Consensus 339 ------------------------~HfvsGSdnG~IaLWs~~KKkplf~-----~~~AHgv------------~~~~~~~ 377 (479)
T KOG0299|consen 339 ------------------------EHFVSGSDNGSIALWSLLKKKPLFT-----SRLAHGV------------IPELDPV 377 (479)
T ss_pred ------------------------cceeeccCCceEEEeeecccCceeE-----eeccccc------------cCCcccc
Confidence 5899999999999999886543211 1100000 0111122
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCC----ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000454 538 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG----SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1491)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg----kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIW 610 (1491)
.++..|++++..|...++|+|+.+|.|++|-+..+ .++..+. -.+.|++|+|++++.++++..|....+-=|
T Consensus 378 ~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 378 NGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 33468999999999999999999999999999887 4455554 567899999999666677766666555444
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=234.35 Aligned_cols=282 Identities=23% Similarity=0.379 Sum_probs=232.5
Q ss_pred EEEEEcC--CCCEE-EEE-----eCCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECC
Q 000454 247 YCAIFDR--SGRYV-ITG-----SDDRLVKIWSMETAYCLASCR--GHEGDITDLAVSSN-NALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 247 t~VaFSp--DG~~L-ATG-----S~DGtIrIWDl~Tg~~l~tL~--gH~~~VtsLafSPD-G~lLASGS~DGtIrVWDl~ 315 (1491)
+++.||| .+++. |++ ...|.+.|-++..+.-+..+. .-...+.+++|+++ .+.+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 7899999 34332 222 246899999997555454443 24678999999995 4578888999999999964
Q ss_pred C-CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 316 D-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 316 t-gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
. ..+++.++.|...|.++.|.+..+ ..+++++.||+|++|+..-++.+.++ .+|...
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r--~~~ltsSWD~TiKLW~~~r~~Sv~Tf--------------------~gh~~~ 149 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRR--RIFLTSSWDGTIKLWDPNRPNSVQTF--------------------NGHNSC 149 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccc--eeEEeeccCCceEeecCCCCcceEee--------------------cCCccE
Confidence 3 368999999999999999999865 47888899999999998877766654 458889
Q ss_pred eEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 395 IFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 395 V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
|...+|+| .+++|++++.|+++++||++.+ ++.+. +..|...|.++.|+.-
T Consensus 150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~--------gk~~~-i~ah~~Eil~cdw~ky------------------- 201 (311)
T KOG0277|consen 150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSP--------GKFMS-IEAHNSEILCCDWSKY------------------- 201 (311)
T ss_pred EEEEecCCCCCCeEEEccCCceEEEEEecCC--------CceeE-EEeccceeEeeccccc-------------------
Confidence 99999999 5789999999999999999752 33444 8899999999999864
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC-
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN- 552 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG- 552 (1491)
++..++||+.|+.|++||++.-+ .++..+.+|...|..+.|||..
T Consensus 202 ------~~~vl~Tg~vd~~vr~wDir~~r----------------------------~pl~eL~gh~~AVRkvk~Sph~~ 247 (311)
T KOG0277|consen 202 ------NHNVLATGGVDNLVRGWDIRNLR----------------------------TPLFELNGHGLAVRKVKFSPHHA 247 (311)
T ss_pred ------CCcEEEecCCCceEEEEehhhcc----------------------------ccceeecCCceEEEEEecCcchh
Confidence 25789999999999999999633 3466778899999999999975
Q ss_pred CEEEEEeccceEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 553 RFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 553 ~~LaSGs~DG~IrIWDl~tg-kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
..||+++.|.+++|||...+ .++.+...|+.-|..+.|++..+.++|+++.|+.++||+.
T Consensus 248 ~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 47889999999999999744 4566778899999999999999999999999999999984
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-23 Score=256.08 Aligned_cols=266 Identities=21% Similarity=0.282 Sum_probs=204.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE-------------EEEecCCCCeEEEEEcC-CCCEEEEEECCC
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL-------------ASCRGHEGDITDLAVSS-NNALVASASNDC 307 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l-------------~tL~gH~~~VtsLafSP-DG~lLASGS~DG 307 (1491)
|-..|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|.+++|+| ++.+||+|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3445666777778777777777777778876544332 14678999999999999 889999999999
Q ss_pred eEEEEECCCC-------CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCC
Q 000454 308 IIRVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 308 tIrVWDl~tg-------k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
+|+|||+.++ .++..+.+|...|.+++|+|++. .+|++++.|++|+|||+.++.....+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~--~iLaSgs~DgtVrIWDl~tg~~~~~l------------ 164 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM--NVLASAGADMVVNVWDVERGKAVEVI------------ 164 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC--CEEEEEeCCCEEEEEECCCCeEEEEE------------
Confidence 9999999765 35678899999999999999853 28999999999999999987655443
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCc-eEEEEccCccccc
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV-NYVQFSGCAVASR 459 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V-~sVafSpdg~as~ 459 (1491)
..|...|.+++|+|+|.+|++++.|+.|+|||+++ ...+..+.+|.+.+ ..+.|.+++
T Consensus 165 --------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs---------g~~v~tl~~H~~~~~~~~~w~~~~---- 223 (493)
T PTZ00421 165 --------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD---------GTIVSSVEAHASAKSQRCLWAKRK---- 223 (493)
T ss_pred --------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC---------CcEEEEEecCCCCcceEEEEcCCC----
Confidence 23677899999999999999999999999999976 34566677887643 456777653
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEe----CCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcee
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCS----RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS----~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 535 (1491)
..+++++ .|+.|++||++.... +...
T Consensus 224 ----------------------~~ivt~G~s~s~Dr~VklWDlr~~~~----------------------------p~~~ 253 (493)
T PTZ00421 224 ----------------------DLIITLGCSKSQQRQIMLWDTRKMAS----------------------------PYST 253 (493)
T ss_pred ----------------------CeEEEEecCCCCCCeEEEEeCCCCCC----------------------------ceeE
Confidence 3555543 589999999985321 1111
Q ss_pred c-cCCCCCeeEEEEcCCCCEEEEEe-ccceEEEEECCCCceEEEEeC-CCCCeEEEEEec
Q 000454 536 I-LPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGSLVHSLTG-HTESTYVLDVHP 592 (1491)
Q Consensus 536 l-~~h~~~VtsVafSPDG~~LaSGs-~DG~IrIWDl~tgkll~tL~g-Hs~~VtsLafSP 592 (1491)
. ......+....|++++.+|++|+ .|+.|++||+.+++++..+.. +..++..++|.|
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 1 11233466678999999999887 599999999999988776643 445677888887
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=264.28 Aligned_cols=281 Identities=25% Similarity=0.409 Sum_probs=247.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceee-eccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC
Q 000454 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV-LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~-L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg 362 (1491)
+...|.+..|. ..++++++.+++|++|+..++..+.. +.+|.+.|++++|..-+. +|++|+.|.++++||+.++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~---~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGD---KLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCC---EEEEEecCCcEEeEecCCC
Confidence 56778888888 56899999999999999999999888 999999999999987444 8999999999999999999
Q ss_pred CccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCC
Q 000454 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1491)
Q Consensus 363 ~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH 442 (1491)
++...+ .+|...|.++... ...+++|+.|.+|++|++.+ ...+..+.+|
T Consensus 282 ~C~~~l--------------------~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n---------~~~l~l~~~h 330 (537)
T KOG0274|consen 282 ECTHSL--------------------QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTN---------GACLNLLRGH 330 (537)
T ss_pred cEEEEe--------------------cCCCceEEEEEcc--CceEeeccCCceEEEEeccC---------cceEEEeccc
Confidence 998887 3478888888775 45788899999999999975 5678888889
Q ss_pred CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCC
Q 000454 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1491)
Q Consensus 443 ~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~ 522 (1491)
...|.++.... +++++|+.||+|++||+.+.
T Consensus 331 ~~~V~~v~~~~----------------------------~~lvsgs~d~~v~VW~~~~~--------------------- 361 (537)
T KOG0274|consen 331 TGPVNCVQLDE----------------------------PLLVSGSYDGTVKVWDPRTG--------------------- 361 (537)
T ss_pred cccEEEEEecC----------------------------CEEEEEecCceEEEEEhhhc---------------------
Confidence 99999999983 58999999999999999863
Q ss_pred CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEE
Q 000454 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSA 601 (1491)
Q Consensus 523 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg-kll~tL~gHs~~VtsLafSPdd~~lLaSg 601 (1491)
..+..+.+|...|.++.+... ..+++|+.|+.|++||+.++ +++.++.+|...|..+.+ ...+|+++
T Consensus 362 --------~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~ 429 (537)
T KOG0274|consen 362 --------KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSS 429 (537)
T ss_pred --------eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEec
Confidence 356677889999999988765 89999999999999999999 999999999999988877 34788899
Q ss_pred eCCCcEEEEeCCCCceEEEEee-CCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccc
Q 000454 602 GYDGKTIVWDIWEGIPIRIYEI-SRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 602 S~DGtIrIWDl~tGk~l~~l~~-h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~ 663 (1491)
+.|++|++||..+++++..+.+ +.+.|+.+++. ...+++++.+|.+.+||+.+++.....
T Consensus 430 ~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 430 SADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 9999999999999999999998 56889988887 567889999999999999999876654
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=253.04 Aligned_cols=278 Identities=19% Similarity=0.340 Sum_probs=237.6
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeecc-
Q 000454 247 YCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG- 325 (1491)
Q Consensus 247 t~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~g- 325 (1491)
.-+.|+ ....||.|. ...|.+|+..++........+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+
T Consensus 181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 346677 445677764 45799999999987777776689999999999999999999999999999999999999998
Q ss_pred CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCC
Q 000454 326 HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1491)
Q Consensus 326 Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~ 405 (1491)
|...|-+++|... .+.+|+.+|.|.++|++..+..... ...|...|..+.|++|+.
T Consensus 259 h~~rvg~laW~~~-----~lssGsr~~~I~~~dvR~~~~~~~~-------------------~~~H~qeVCgLkws~d~~ 314 (484)
T KOG0305|consen 259 HASRVGSLAWNSS-----VLSSGSRDGKILNHDVRISQHVVST-------------------LQGHRQEVCGLKWSPDGN 314 (484)
T ss_pred cCceeEEEeccCc-----eEEEecCCCcEEEEEEecchhhhhh-------------------hhcccceeeeeEECCCCC
Confidence 9999999999943 7999999999999999876644331 356899999999999999
Q ss_pred EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEE
Q 000454 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV 485 (1491)
Q Consensus 406 ~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~La 485 (1491)
+||+|+.|+.+.|||... ...+..+..|...|.+++|+|-. ...||
T Consensus 315 ~lASGgnDN~~~Iwd~~~---------~~p~~~~~~H~aAVKA~awcP~q-------------------------~~lLA 360 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLS---------PEPKFTFTEHTAAVKALAWCPWQ-------------------------SGLLA 360 (484)
T ss_pred eeccCCCccceEeccCCC---------ccccEEEeccceeeeEeeeCCCc-------------------------cCceE
Confidence 999999999999999943 45677889999999999999864 45788
Q ss_pred EE--eCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE--Eecc
Q 000454 486 TC--SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA--AIMD 561 (1491)
Q Consensus 486 Sg--S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS--Gs~D 561 (1491)
+| +.|++|++||..++. ..........|..|.|++..+-|++ |..+
T Consensus 361 sGGGs~D~~i~fwn~~~g~------------------------------~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 361 TGGGSADRCIKFWNTNTGA------------------------------RIDSVDTGSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred EcCCCcccEEEEEEcCCCc------------------------------EecccccCCceeeEEEcCCCCEEEEecCCCC
Confidence 86 569999999998744 2223445678999999999977776 4567
Q ss_pred ceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000454 562 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 562 G~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG 615 (1491)
+.|.||+..+.+.+..+.+|...|..++++| ++..+++|+.|.++++|++-..
T Consensus 411 n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 411 NQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEecccCcEEeccccCC
Confidence 7899999999999999999999999999999 6788889999999999999764
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=257.46 Aligned_cols=340 Identities=20% Similarity=0.309 Sum_probs=266.3
Q ss_pred CCCCEE---EEEEcC-CCCEEEEEeCCCeEEEEECCCC------eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 000454 242 HRNAVY---CAIFDR-SGRYVITGSDDRLVKIWSMETA------YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311 (1491)
Q Consensus 242 H~~~Vt---~VaFSp-DG~~LATGS~DGtIrIWDl~Tg------~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrV 311 (1491)
|...|. ++..+. .++||+|||.||.|++|++..- ..+.++..|..+|.+++...+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 445555 444444 5678999999999999998542 246778899999999999999999999999999999
Q ss_pred EECCCC--CceeeeccCCCceEEEEe-cCCCCceEEEEEEeCCCcEEEEccCCCCc--cceeecCCCCCcccCCCCCCCC
Q 000454 312 WRLPDG--LPISVLRGHTAAVTAIAF-SPRPGSVYQLLSSSDDGTCRIWDARYSQF--SPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 312 WDl~tg--k~i~~L~gHs~~VtsLaF-SPdg~s~~~LaSgS~DGtVrIWDl~tg~~--~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
|+...+ -++.++..|...|.|+++ .++.. ++++||-|+.|.+||+.++.. +..+. ......
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~---lvaSgGLD~~IflWDin~~~~~l~~s~n-----------~~t~~s 165 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNE---LVASGGLDRKIFLWDINTGTATLVASFN-----------NVTVNS 165 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCce---eEEecCCCccEEEEEccCcchhhhhhcc-----------cccccc
Confidence 999877 688899999999999999 66654 899999999999999998732 22221 111111
Q ss_pred CCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCC
Q 000454 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466 (1491)
Q Consensus 387 s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~ 466 (1491)
...++...|++++.++.|..|++|+..+.|++||.++ ...+..+.||+..|..+..+.+|
T Consensus 166 l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt---------~~kimkLrGHTdNVr~ll~~dDG----------- 225 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT---------CKKIMKLRGHTDNVRVLLVNDDG----------- 225 (735)
T ss_pred CCCCCccceeeeecCCcceEEEecCcccceEEecccc---------ccceeeeeccccceEEEEEcCCC-----------
Confidence 1226788999999999999999999999999999987 55677888999999999999987
Q ss_pred CCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEE
Q 000454 467 KEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI 546 (1491)
Q Consensus 467 ~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsV 546 (1491)
..++++|.||+|++||+...+ ++..+..|...|+++
T Consensus 226 ---------------t~~ls~sSDgtIrlWdLgqQr-----------------------------Cl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 226 ---------------TRLLSASSDGTIRLWDLGQQR-----------------------------CLATYIVHKEGVWAL 261 (735)
T ss_pred ---------------CeEeecCCCceEEeeeccccc-----------------------------eeeeEEeccCceEEE
Confidence 699999999999999998633 344567788889999
Q ss_pred EEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-------CceEE
Q 000454 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE-------GIPIR 619 (1491)
Q Consensus 547 afSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t-------Gk~l~ 619 (1491)
..+|+-.++++|+.||.|+.=|+.+......+.....+|..+..+-.+..+ -++..|+.|+-|...- +.+..
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~-WvtTtds~I~rW~~~~~~~l~~s~~~~~ 340 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSV-WVTTTDSSIKRWKLEPDIALSVSGDLDF 340 (735)
T ss_pred eeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCc-eeeeccccceecCCccccccccCCCCCc
Confidence 999999999999999999999999864444444455667777776534443 4577899999996532 11111
Q ss_pred ------------------EEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 000454 620 ------------------IYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1491)
Q Consensus 620 ------------------~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~ 661 (1491)
.+. +..+|...++-.|.+++++-+..|.+.+||+-.+..+.
T Consensus 341 ~~T~~~~~~~~~~~tp~~vi~-Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~ 399 (735)
T KOG0308|consen 341 FSTDSNNHSCDLTNTPDSVIP-GGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVE 399 (735)
T ss_pred ccccCCCccccccCCCceecc-CchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehh
Confidence 111 12244455666788999999999999999997765544
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=237.27 Aligned_cols=285 Identities=19% Similarity=0.292 Sum_probs=243.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeee--------ccCCCceEEEEecCCCCceEEEEEEeCCCcE
Q 000454 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL--------RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1491)
Q Consensus 283 gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L--------~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtV 354 (1491)
+....+.|..|+|||+||++|+.||.|.||+..+|+....+ .-+..+|.|+.|+.|.. .|++|+.||.|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE---MlAsGsqDGkI 287 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE---MLASGSQDGKI 287 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH---HhhccCcCCcE
Confidence 55677899999999999999999999999999999765443 34678999999999987 89999999999
Q ss_pred EEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCc
Q 000454 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1491)
Q Consensus 355 rIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~ 434 (1491)
++|.+.+|.|+.++. ..|...|+|+.|+.|+..+++++.|.+++|.-+.+ ++
T Consensus 288 KvWri~tG~ClRrFd-------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS---------GK 339 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFD-------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS---------GK 339 (508)
T ss_pred EEEEEecchHHHHhh-------------------hhhccCeeEEEEccCcchhhcccccceEEEecccc---------ch
Confidence 999999999998873 35888999999999999999999999999998876 56
Q ss_pred eeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccc
Q 000454 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1491)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1491)
.+..+.+|...|+...|.++| ..+++++.||+|++|+..+..+...
T Consensus 340 ~LKEfrGHsSyvn~a~ft~dG--------------------------~~iisaSsDgtvkvW~~KtteC~~T-------- 385 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATFTDDG--------------------------HHIISASSDGTVKVWHGKTTECLST-------- 385 (508)
T ss_pred hHHHhcCccccccceEEcCCC--------------------------CeEEEecCCccEEEecCcchhhhhh--------
Confidence 788999999999999999987 6999999999999999887442110
Q ss_pred ccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC-CCEEEEEeccceEEEEECCCCceEEEEeC---CCCCeEEEEE
Q 000454 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-NRFVLAAIMDCRICVWNAADGSLVHSLTG---HTESTYVLDV 590 (1491)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD-G~~LaSGs~DG~IrIWDl~tgkll~tL~g---Hs~~VtsLaf 590 (1491)
.+..+....|+.+..-|. -..++++...++|+|.++ .|+.++.+.. ..+...+.+.
T Consensus 386 -------------------fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 386 -------------------FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred -------------------ccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEe
Confidence 111234456777766664 457888888999999998 4888888753 2345566778
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 591 SPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
+| .+.++.+.+.|+.++.|.+.+|++-+++..|...|..++-+|..+.||+-+.||.+++|.
T Consensus 446 Sp-kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SP-KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cC-CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99 677888999999999999999999999999999999999999999999999999999995
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-25 Score=245.43 Aligned_cols=292 Identities=20% Similarity=0.309 Sum_probs=235.8
Q ss_pred EEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000454 278 LASCRGHEGDITDLAVSSNN-ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 278 l~tL~gH~~~VtsLafSPDG-~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrI 356 (1491)
+..|.||...|.|++=+|.. ..+|+|+.||.|+|||+.+..++..+..|.+.|..|++... .+++++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~-----~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQT-----SFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEeccc-----ceEEecCCcceee
Confidence 44567899999999999976 78999999999999999999999999999999999999882 6899999999999
Q ss_pred EccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCcee
Q 000454 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1491)
Q Consensus 357 WDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1491)
|-+... ...++. ....+..+.-+..+..++++|. .|.|||... ..++
T Consensus 134 wk~~~~-p~~til---------------------g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R---------~~Pv 180 (433)
T KOG0268|consen 134 WKIDGP-PLHTIL---------------------GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQR---------DNPV 180 (433)
T ss_pred eeccCC-cceeee---------------------ccccccccccccccccccccCc--eeeeccccc---------CCcc
Confidence 988653 222221 2344566666666778888875 489999854 3456
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccccc
Q 000454 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1491)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1491)
..+.-....|.++.|+|.- ...|++|+.|+.|.+||++......+.
T Consensus 181 ~smswG~Dti~svkfNpvE-------------------------TsILas~~sDrsIvLyD~R~~~Pl~KV--------- 226 (433)
T KOG0268|consen 181 SSMSWGADSISSVKFNPVE-------------------------TSILASCASDRSIVLYDLRQASPLKKV--------- 226 (433)
T ss_pred ceeecCCCceeEEecCCCc-------------------------chheeeeccCCceEEEecccCCcccee---------
Confidence 6667777888999999864 358999999999999999975432221
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC-CceEEEEeCCCCCeEEEEEecCCC
Q 000454 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNP 595 (1491)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t-gkll~tL~gHs~~VtsLafSPdd~ 595 (1491)
.....-+.|+|+|.+-.+++|..|..++.||++. ..++....+|.+.|.+|+|+| .+
T Consensus 227 ---------------------i~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG 284 (433)
T KOG0268|consen 227 ---------------------ILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TG 284 (433)
T ss_pred ---------------------eeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-Cc
Confidence 1123457799999888888999999999999976 456788899999999999999 55
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEeeC-CcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccc
Q 000454 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEIS-RFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 596 ~lLaSgS~DGtIrIWDl~tGk~l~~l~~h-~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~ 663 (1491)
.-+++||.|.+|+||.+..+.....+... ...|.++.||-|.+|+++|++|+.|++|.....+.+..+
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 66679999999999999888766655432 237999999999999999999999999998777654433
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-24 Score=229.29 Aligned_cols=282 Identities=18% Similarity=0.296 Sum_probs=227.8
Q ss_pred EEEEEcC--CCCEEEEE------ECCCeEEEEECCCCCceeeecc--CCCceEEEEecCCCCceEEEEEEeCCCcEEEEc
Q 000454 289 TDLAVSS--NNALVASA------SNDCIIRVWRLPDGLPISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358 (1491)
Q Consensus 289 tsLafSP--DG~lLASG------S~DGtIrVWDl~tgk~i~~L~g--Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWD 358 (1491)
.++.||| .+++.++. ...|.+.|.++..++-+..+.. -...+..++|++... ..+++++.||+++|||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e--~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHE--NQVIAASGDGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCc--ceEEEEecCceEEEec
Confidence 5788999 34333322 2368899999876655555442 357799999999865 4899999999999999
Q ss_pred cCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceee
Q 000454 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1491)
Q Consensus 359 l~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1491)
+..... +......|...|.++.|++ ++..+++++-|++|++|+... ...+.
T Consensus 90 ~~~~s~-------------------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r---------~~Sv~ 141 (311)
T KOG0277|consen 90 LTMPSK-------------------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR---------PNSVQ 141 (311)
T ss_pred cCCCCc-------------------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC---------CcceE
Confidence 543221 2233456899999999998 566788889999999999865 44677
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccC
Q 000454 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1491)
Q Consensus 438 ~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~ 517 (1491)
++.+|...|...+|+|.. ++.|+++|.||++++||++..
T Consensus 142 Tf~gh~~~Iy~a~~sp~~-------------------------~nlfas~Sgd~~l~lwdvr~~---------------- 180 (311)
T KOG0277|consen 142 TFNGHNSCIYQAAFSPHI-------------------------PNLFASASGDGTLRLWDVRSP---------------- 180 (311)
T ss_pred eecCCccEEEEEecCCCC-------------------------CCeEEEccCCceEEEEEecCC----------------
Confidence 899999999999999974 579999999999999998852
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC-CCEEEEEeccceEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCC
Q 000454 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-NRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNP 595 (1491)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD-G~~LaSGs~DG~IrIWDl~tg-kll~tL~gHs~~VtsLafSPdd~ 595 (1491)
+....+..|...|.++.|+.- ...|+||+.|+.|++||+++- .++..+.+|.-.|..|.|||...
T Consensus 181 -------------gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~ 247 (311)
T KOG0277|consen 181 -------------GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA 247 (311)
T ss_pred -------------CceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh
Confidence 122236678889999999984 457889999999999999874 56889999999999999999888
Q ss_pred cEEEEEeCCCcEEEEeCCCC-ceEEEEeeCCcceEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 000454 596 RIAMSAGYDGKTIVWDIWEG-IPIRIYEISRFRLVDGKFSP-DGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 596 ~lLaSgS~DGtIrIWDl~tG-k~l~~l~~h~~~VtslafSP-DG~~LAsgs~DG~I~IWdl 654 (1491)
.+||++++|-+++|||...+ .++.++..|..-|..+.||+ ++.++|.++.|+.++||+.
T Consensus 248 ~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999999999999999854 46667776777788899998 5779999999999999984
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=230.00 Aligned_cols=295 Identities=17% Similarity=0.279 Sum_probs=233.5
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC------------C------eEEEEEecCCCCeEEEEEcCCC
Q 000454 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET------------A------YCLASCRGHEGDITDLAVSSNN 297 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T------------g------~~l~tL~gH~~~VtsLafSPDG 297 (1491)
...+..|.+++.|.+|++||.++|||+.|..|+|.|++. | -.+++|..|...|.++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 356788999999999999999999999999999999862 1 3567888999999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCCceeeec--cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCC
Q 000454 298 ALVASASNDCIIRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1491)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tgk~i~~L~--gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~ 375 (1491)
..|++|+.|++|+++|+......+.++ ....+|.+|.|+|.|. +|+.|..--++++||+.+-++....
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe---fllvgTdHp~~rlYdv~T~Qcfvsa------- 254 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE---FLLVGTDHPTLRLYDVNTYQCFVSA------- 254 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc---eEEEecCCCceeEEeccceeEeeec-------
Confidence 999999999999999997654333222 2567899999999998 8999999999999999987653322
Q ss_pred cccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCc
Q 000454 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455 (1491)
Q Consensus 376 ~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg 455 (1491)
.....|...|+++.+++.|++.++|+.||.|+|||--.+ +++..+.. .
T Consensus 255 ----------nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~---------rCv~t~~~----------A--- 302 (430)
T KOG0640|consen 255 ----------NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN---------RCVRTIGN----------A--- 302 (430)
T ss_pred ----------CcccccccceeEEEecCCccEEEEeccCCcEEeeccccH---------HHHHHHHh----------h---
Confidence 123458889999999999999999999999999986331 12211110 0
Q ss_pred cccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcee
Q 000454 456 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535 (1491)
Q Consensus 456 ~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 535 (1491)
T Consensus 303 -------------------------------------------------------------------------------- 302 (430)
T KOG0640|consen 303 -------------------------------------------------------------------------------- 302 (430)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCC--C---CeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000454 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT--E---STYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1491)
Q Consensus 536 l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs--~---~VtsLafSPdd~~lLaSgS~DGtIrIW 610 (1491)
.....|.+..|..+|+||++.+.|..+++|.+.+++++..+.|-. + --+...|......+|+---..+.+.-|
T Consensus 303 --H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsW 380 (430)
T KOG0640|consen 303 --HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSW 380 (430)
T ss_pred --cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeec
Confidence 012357888999999999999999999999999999999887642 1 123344554233344333345789999
Q ss_pred eCCCCceEEEEe-eCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 611 DIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 611 Dl~tGk~l~~l~-~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
|..++..+..+. +|.+.+..+.-||.+.-+++++.|-.+++|--
T Consensus 381 daRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 381 DARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred cccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 999987766654 67889999999999999999999999999963
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=246.48 Aligned_cols=331 Identities=17% Similarity=0.262 Sum_probs=262.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE---EEEecCCCCeEEEEEcCC-----------CCEEEEEECCCeEEE
Q 000454 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL---ASCRGHEGDITDLAVSSN-----------NALVASASNDCIIRV 311 (1491)
Q Consensus 246 Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l---~tL~gH~~~VtsLafSPD-----------G~lLASGS~DGtIrV 311 (1491)
..++.|++....|.+.-.|..|+|||+.+-..+ ..+-.|...|++|.--|. ...+++++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 356789999999999999999999999764332 233459999999877652 125889999999999
Q ss_pred EECCCCCceee-------------------------------------eccCCCceEEEEecCCCCceEEEEEEeCCCcE
Q 000454 312 WRLPDGLPISV-------------------------------------LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1491)
Q Consensus 312 WDl~tgk~i~~-------------------------------------L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtV 354 (1491)
|++..+..-.+ .-+..-.|.+++.+|+++ +|++|..-|.|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq---hLAsGDr~Gnl 483 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ---HLASGDRGGNL 483 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc---eecccCccCce
Confidence 99865311000 001233589999999998 99999999999
Q ss_pred EEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC---CCCEEEEecCCceEEEEeCCCCCCCCCCC
Q 000454 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA---NGTVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1491)
Q Consensus 355 rIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP---DG~~LasGs~DG~IrVWDl~t~~~~~s~~ 431 (1491)
+||++........+ ..|...|.|+.|+. ..++||+++.|..|.|||+..
T Consensus 484 rVy~Lq~l~~~~~~--------------------eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-------- 535 (1080)
T KOG1408|consen 484 RVYDLQELEYTCFM--------------------EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-------- 535 (1080)
T ss_pred EEEEehhhhhhhhe--------------------ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc--------
Confidence 99999876655444 45899999999986 347899999999999999963
Q ss_pred CCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccc
Q 000454 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511 (1491)
Q Consensus 432 ~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~ 511 (1491)
....+..+.+|...|++|.|...+. +..+++++.|..|.+--.+... .+. .
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gl------------------------n~~MiscGADksimFr~~qk~~-~g~--~-- 586 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGL------------------------NRKMISCGADKSIMFRVNQKAS-SGR--L-- 586 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCC------------------------ceEEEeccCchhhheehhcccc-Cce--e--
Confidence 2456788999999999999987752 3478999999887653222100 000 0
Q ss_pred cccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeC---CCCCeEEE
Q 000454 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG---HTESTYVL 588 (1491)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~g---Hs~~VtsL 588 (1491)
.+...-......+..++..|..+++++++.|..|+||++.+|+..+.|+| |.+....+
T Consensus 587 -------------------f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv 647 (1080)
T KOG1408|consen 587 -------------------FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV 647 (1080)
T ss_pred -------------------ccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEE
Confidence 00111112234578899999999999999999999999999999999975 66677888
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000454 589 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 589 afSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~t 656 (1491)
...| .+.|||+.+.|.++.|+|..+|+++..+.+|...|+.+.|.+|-++|++.+.||.|+||.+..
T Consensus 648 ~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 648 ILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 8999 788999999999999999999999999999999999999999999999999999999999843
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=237.01 Aligned_cols=284 Identities=21% Similarity=0.328 Sum_probs=245.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeee
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L 323 (1491)
-.|+++...+....++||+.|..+.++|..+++.+.+|.||...|+.+.|+|+...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46888888888789999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred ccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCC
Q 000454 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1491)
Q Consensus 324 ~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPD 403 (1491)
..|..+|+.+..+|.+. ||++++.||+..+.|++++.++...... ...-.+++.+|+||
T Consensus 300 ~~h~~~V~~ls~h~tge---YllsAs~d~~w~Fsd~~~g~~lt~vs~~------------------~s~v~~ts~~fHpD 358 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGE---YLLSASNDGTWAFSDISSGSQLTVVSDE------------------TSDVEYTSAAFHPD 358 (506)
T ss_pred ccccccceeeeeccCCc---EEEEecCCceEEEEEccCCcEEEEEeec------------------cccceeEEeeEcCC
Confidence 99999999999999998 9999999999999999999877665321 13345899999999
Q ss_pred CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCe
Q 000454 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1491)
Q Consensus 404 G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~ 483 (1491)
|.+|.+|..||.|+|||+.. ...+..+.+|+++|..|+|+.+| -+
T Consensus 359 gLifgtgt~d~~vkiwdlks---------~~~~a~Fpght~~vk~i~FsENG--------------------------Y~ 403 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLKS---------QTNVAKFPGHTGPVKAISFSENG--------------------------YW 403 (506)
T ss_pred ceEEeccCCCceEEEEEcCC---------ccccccCCCCCCceeEEEeccCc--------------------------eE
Confidence 99999999999999999975 33677889999999999999987 48
Q ss_pred EEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccce
Q 000454 484 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR 563 (1491)
Q Consensus 484 LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~ 563 (1491)
|++++.|+.|++||++..+... ........+|.++.|.+.|.+|+.++.+=.
T Consensus 404 Lat~add~~V~lwDLRKl~n~k----------------------------t~~l~~~~~v~s~~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 404 LATAADDGSVKLWDLRKLKNFK----------------------------TIQLDEKKEVNSLSFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred EEEEecCCeEEEEEehhhcccc----------------------------eeeccccccceeEEEcCCCCeEEeecceeE
Confidence 9999999999999999633110 011223346899999999999999988877
Q ss_pred EEEEEC--CCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 564 ICVWNA--ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 564 IrIWDl--~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
|++++- ..+.++..+..|.+..+++.|.. ...+++++|.|..++|+.+
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~-~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRFGE-HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeeecc-cceEEeeccchhheEEeec
Confidence 777774 35778888889999999999976 6789999999999888764
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=261.78 Aligned_cols=278 Identities=22% Similarity=0.328 Sum_probs=217.3
Q ss_pred ceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC------------------CeEEEEEecCCCCeEEEEEc
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET------------------AYCLASCRGHEGDITDLAVS 294 (1491)
Q Consensus 233 ~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T------------------g~~l~tL~gH~~~VtsLafS 294 (1491)
.+.+.++..|.+.|+|+.|+|||++||+||+|+.|.||.... .+++..+++|.+.|.+++|+
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 456778889999999999999999999999999999998762 24678899999999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCC
Q 000454 295 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1491)
Q Consensus 295 PDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~ 374 (1491)
|++.+||+++.|++|.||+..+.+.+.++.+|.+.|..+.|.|-|+ +|++-+.|++|+||++.+-.+...+.-+..
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk---y~ASqsdDrtikvwrt~dw~i~k~It~pf~- 214 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK---YFASQSDDRTLKVWRTSDWGIEKSITKPFE- 214 (942)
T ss_pred CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccC---eeeeecCCceEEEEEcccceeeEeeccchh-
Confidence 9999999999999999999999999999999999999999999998 999999999999999776555444422111
Q ss_pred CcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC----CceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEE
Q 000454 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS----DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450 (1491)
Q Consensus 375 ~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~----DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVa 450 (1491)
..+....+..+.|+|||.+|++... -.++.|.+-.+ +..-..+-||..++.++.
T Consensus 215 -------------~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t---------Wk~~~~LvGH~~p~evvr 272 (942)
T KOG0973|consen 215 -------------ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT---------WKVDKDLVGHSAPVEVVR 272 (942)
T ss_pred -------------hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC---------ceeeeeeecCCCceEEEE
Confidence 1234556889999999999998643 33577776543 555677899999999999
Q ss_pred EccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 000454 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530 (1491)
Q Consensus 451 fSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 530 (1491)
|+|.-+-.... .....-.... ...+++|+.|++|.||.....+....
T Consensus 273 FnP~lfe~~~~-------ng~~~~~~~~--y~i~AvgSqDrSlSVW~T~~~RPl~v------------------------ 319 (942)
T KOG0973|consen 273 FNPKLFERNNK-------NGTSTQPNCY--YCIAAVGSQDRSLSVWNTALPRPLFV------------------------ 319 (942)
T ss_pred eChHHhccccc-------cCCccCCCcc--eEEEEEecCCccEEEEecCCCCchhh------------------------
Confidence 99964211111 0000000000 02688999999999998765332111
Q ss_pred CCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCc
Q 000454 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS 573 (1491)
Q Consensus 531 ~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgk 573 (1491)
...-....|..++|+|||-.|++++.||+|.++.+...+
T Consensus 320 ----i~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 320 ----IHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred ----hhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 111234579999999999999999999999999886543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-22 Score=227.91 Aligned_cols=367 Identities=13% Similarity=0.220 Sum_probs=257.1
Q ss_pred CCcccccceeEEEEccCCCCEEEEEEcC--CCCEEEEE--eCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 000454 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDR--SGRYVITG--SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA 301 (1491)
Q Consensus 226 ~~~~v~t~k~v~tL~GH~~~Vt~VaFSp--DG~~LATG--S~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLA 301 (1491)
..|+..++..++.|-.-...|+||+|++ .|.+|+.. +.+..+.|||+..+..+...+.-...|..+.|+|.+..|+
T Consensus 137 riWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nli 216 (626)
T KOG2106|consen 137 RIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLI 216 (626)
T ss_pred eecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEE
Confidence 3477777888888888888999999998 35555544 4467899999998888887777788899999999665555
Q ss_pred EEECCCeEEEEECCCCCceee---eccC-CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcc
Q 000454 302 SASNDCIIRVWRLPDGLPISV---LRGH-TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1491)
Q Consensus 302 SGS~DGtIrVWDl~tgk~i~~---L~gH-s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~ 377 (1491)
.....+.+.+|+++.+..... +..+ ...|.|++|.+++. +++|..+|.|.||+..+.+..+...
T Consensus 217 it~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd----viTgDS~G~i~Iw~~~~~~~~k~~~-------- 284 (626)
T KOG2106|consen 217 ITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD----VITGDSGGNILIWSKGTNRISKQVH-------- 284 (626)
T ss_pred EEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC----EEeecCCceEEEEeCCCceEEeEee--------
Confidence 545578999999988865443 3333 36899999999986 9999999999999997776655542
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCC---CCCceeeeecCCCCCceEEEEccC
Q 000454 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD---QPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 378 ~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~---~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
.|.+.|.+++...+|.+|- |+.|..|..||-.-.+..... +.+.......++.+ + -|--+.+
T Consensus 285 ------------aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d-i-~vGTtrN 349 (626)
T KOG2106|consen 285 ------------AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD-I-LVGTTRN 349 (626)
T ss_pred ------------ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCc-E-EEeeccc
Confidence 4889999999999998666 999999999994221111110 00111111122221 0 0000000
Q ss_pred cc-----ccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCC
Q 000454 455 AV-----ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1491)
Q Consensus 455 g~-----as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~ 529 (1491)
.. ...+........+.... -....+.+++++++.|+.+++|+-. ...|...
T Consensus 350 ~iL~Gt~~~~f~~~v~gh~delwg-la~hps~~q~~T~gqdk~v~lW~~~-------k~~wt~~---------------- 405 (626)
T KOG2106|consen 350 FILQGTLENGFTLTVQGHGDELWG-LATHPSKNQLLTCGQDKHVRLWNDH-------KLEWTKI---------------- 405 (626)
T ss_pred eEEEeeecCCceEEEEecccceee-EEcCCChhheeeccCcceEEEccCC-------ceeEEEE----------------
Confidence 00 00000000000000000 0011235789999999999999811 1223322
Q ss_pred CCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 000454 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIV 609 (1491)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrI 609 (1491)
...++.|+.|+|.| .||+|+..|...|.|.++..++..-.. ..+++++.|+| ++.+||.|+.|+.|+|
T Consensus 406 ---------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 406 ---------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNHIYI 473 (626)
T ss_pred ---------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCeEEE
Confidence 23567899999999 999999999999999999666665554 88999999999 7889999999999999
Q ss_pred EeCCCC-ceEEEEe-eCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 610 WDIWEG-IPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 610 WDl~tG-k~l~~l~-~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
|.+... ..+..+. .+..+|+.+.||+|+++|.+-+.|-.|..|...
T Consensus 474 y~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 474 YRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 999754 3333332 233689999999999999999999999999443
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=221.27 Aligned_cols=274 Identities=18% Similarity=0.264 Sum_probs=230.0
Q ss_pred ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEE
Q 000454 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1491)
Q Consensus 319 ~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sl 398 (1491)
.+..+.++.++|.++.|.-+|+ +.++++.|.+|++|+...+.++.++ .+|...|..+
T Consensus 9 r~~~l~~~qgaV~avryN~dGn---Y~ltcGsdrtvrLWNp~rg~liktY--------------------sghG~EVlD~ 65 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGN---YCLTCGSDRTVRLWNPLRGALIKTY--------------------SGHGHEVLDA 65 (307)
T ss_pred hceeecccccceEEEEEccCCC---EEEEcCCCceEEeecccccceeeee--------------------cCCCceeeec
Confidence 4567788999999999999998 9999999999999999998887776 5689999999
Q ss_pred EECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 399 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 399 afSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
+.+.|...|++|+.|..|.+||+.+ ++.++.+.+|.+.|+.++|....
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~T---------Gkv~Rr~rgH~aqVNtV~fNees----------------------- 113 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNT---------GKVDRRFRGHLAQVNTVRFNEES----------------------- 113 (307)
T ss_pred cccccccccccCCCCceEEEEEccc---------CeeeeecccccceeeEEEecCcc-----------------------
Confidence 9999999999999999999999987 56788999999999999999764
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG 558 (1491)
..+++|+.|.++++||.++.. ..|++.+......|.+|..+ +..|++|
T Consensus 114 ---SVv~SgsfD~s~r~wDCRS~s---------------------------~ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 114 ---SVVASGSFDSSVRLWDCRSRS---------------------------FEPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred ---eEEEeccccceeEEEEcccCC---------------------------CCccchhhhhcCceeEEEec--ccEEEee
Confidence 589999999999999999744 24555566667788888775 5689999
Q ss_pred eccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcce--EEEEEcCC
Q 000454 559 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL--VDGKFSPD 636 (1491)
Q Consensus 559 s~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~V--tslafSPD 636 (1491)
+.||+++.||++.|++...+-+| +|+++.|++ ++..++.++.|++|++.|-.+|+++..+.+|...- .+++++..
T Consensus 162 S~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred ccCCcEEEEEeecceeehhhcCC--cceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccc
Confidence 99999999999999988777665 699999999 66666779999999999999999999999887643 46788888
Q ss_pred CCEEEEEeCCCcEEEEECCCCcccccc-------cceeeecCCCcceEEccCC
Q 000454 637 GASIILSDDVGQLYILNTGQGESQKDA-------KYDQFFLGDYRPLVQDTYG 682 (1491)
Q Consensus 637 G~~LAsgs~DG~I~IWdl~tG~~~~~~-------~~~~~fs~D~r~La~d~~G 682 (1491)
..++++|++||.|++||+-.+..+..+ ..++.++|.-..+++...+
T Consensus 239 dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 239 DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH 291 (307)
T ss_pred ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC
Confidence 899999999999999999887664432 2344555554444444333
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=250.63 Aligned_cols=252 Identities=18% Similarity=0.242 Sum_probs=191.0
Q ss_pred EeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCC--------ceeeeccCCCceE
Q 000454 261 GSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN-NALVASASNDCIIRVWRLPDGL--------PISVLRGHTAAVT 331 (1491)
Q Consensus 261 GS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPD-G~lLASGS~DGtIrVWDl~tgk--------~i~~L~gHs~~Vt 331 (1491)
|+.++.|+||+......+..+.+|.+.|.+|+|+|+ +.+||+|+.||+|+||++.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667899999999888888999999999999999996 7899999999999999997642 3456789999999
Q ss_pred EEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec
Q 000454 332 AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 411 (1491)
Q Consensus 332 sLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs 411 (1491)
+++|+|++. .+|++++.|++|+|||+++++....+. +...|.+++|+|+|.+|++++
T Consensus 130 sVaf~P~g~--~iLaSgS~DgtIrIWDl~tg~~~~~i~---------------------~~~~V~SlswspdG~lLat~s 186 (568)
T PTZ00420 130 IIDWNPMNY--YIMCSSGFDSFVNIWDIENEKRAFQIN---------------------MPKKLSSLKWNIKGNLLSGTC 186 (568)
T ss_pred EEEECCCCC--eEEEEEeCCCeEEEEECCCCcEEEEEe---------------------cCCcEEEEEECCCCCEEEEEe
Confidence 999999876 356799999999999999887544331 335699999999999999999
Q ss_pred CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCC
Q 000454 412 SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG 491 (1491)
Q Consensus 412 ~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG 491 (1491)
.|+.|+|||+++ ...+..+.+|.+.+....+
T Consensus 187 ~D~~IrIwD~Rs---------g~~i~tl~gH~g~~~s~~v---------------------------------------- 217 (568)
T PTZ00420 187 VGKHMHIIDPRK---------QEIASSFHIHDGGKNTKNI---------------------------------------- 217 (568)
T ss_pred cCCEEEEEECCC---------CcEEEEEecccCCceeEEE----------------------------------------
Confidence 999999999976 3344555666554322211
Q ss_pred eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccc----eEEEE
Q 000454 492 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC----RICVW 567 (1491)
Q Consensus 492 tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG----~IrIW 567 (1491)
....|++++.+|++++.++ .|+||
T Consensus 218 ----------------------------------------------------~~~~fs~d~~~IlTtG~d~~~~R~VkLW 245 (568)
T PTZ00420 218 ----------------------------------------------------WIDGLGGDDNYILSTGFSKNNMREMKLW 245 (568)
T ss_pred ----------------------------------------------------EeeeEcCCCCEEEEEEcCCCCccEEEEE
Confidence 1234567888888877664 69999
Q ss_pred ECCC-CceEEEEeC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee--CCcceEEEEEcCCCC
Q 000454 568 NAAD-GSLVHSLTG--HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI--SRFRLVDGKFSPDGA 638 (1491)
Q Consensus 568 Dl~t-gkll~tL~g--Hs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~--h~~~VtslafSPDG~ 638 (1491)
|+++ ++++..+.. +.+.+.. .|.++.+.++++|+.|+.|++|++..+.. ..+.. +..++..++|.|...
T Consensus 246 Dlr~~~~pl~~~~ld~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 246 DLKNTTSALVTMSIDNASAPLIP-HYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred ECCCCCCceEEEEecCCccceEE-eeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEccccc
Confidence 9884 556655433 2333333 34454788889999999999999987743 22221 345677889999653
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=239.18 Aligned_cols=283 Identities=18% Similarity=0.264 Sum_probs=234.2
Q ss_pred CCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCC
Q 000454 285 EGDITDLAVSSNNAL-VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1491)
Q Consensus 285 ~~~VtsLafSPDG~l-LASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~ 363 (1491)
.+.|.+++|+|...+ +|+.+ .-.+.||+..+...+..+......|+++.|..||. +|++|+..|.|+|||+.+..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~---LlaaGD~sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGR---LLAAGDESGHVKVFDMKSRV 101 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCe---EEEccCCcCcEEEeccccHH
Confidence 468999999995442 33333 34799999988888888887889999999999998 89999999999999976543
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCC
Q 000454 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1491)
Q Consensus 364 ~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH 442 (1491)
.+..+ ..|..+|..+.|+|.+ ..|++|+.|+.+++||+.+. .....+.+|
T Consensus 102 iLR~~--------------------~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a---------~v~~~l~~h 152 (487)
T KOG0310|consen 102 ILRQL--------------------YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA---------YVQAELSGH 152 (487)
T ss_pred HHHHH--------------------hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc---------EEEEEecCC
Confidence 33333 4588899999999954 57788889999999999762 346688999
Q ss_pred CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCC
Q 000454 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1491)
Q Consensus 443 ~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~ 522 (1491)
++.|.+.+|+|.. +..++||+.||+|++||++...
T Consensus 153 tDYVR~g~~~~~~-------------------------~hivvtGsYDg~vrl~DtR~~~-------------------- 187 (487)
T KOG0310|consen 153 TDYVRCGDISPAN-------------------------DHIVVTGSYDGKVRLWDTRSLT-------------------- 187 (487)
T ss_pred cceeEeeccccCC-------------------------CeEEEecCCCceEEEEEeccCC--------------------
Confidence 9999999999864 3589999999999999998621
Q ss_pred CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEE
Q 000454 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSA 601 (1491)
Q Consensus 523 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg-kll~tL~gHs~~VtsLafSPdd~~lLaSg 601 (1491)
.......|..+|..+.+-|.|..||+++. ..|+|||+.+| +++..+..|...|+|+.+.. ++..|++|
T Consensus 188 ---------~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~ 256 (487)
T KOG0310|consen 188 ---------SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSG 256 (487)
T ss_pred ---------ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeec
Confidence 22334568889999999999999999865 48999999855 55555556999999999998 55777799
Q ss_pred eCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 602 S~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
|-|+.|+|||+.+.+.+..+. -.++|.+++.+||++.+++|..+|.+.+-+....
T Consensus 257 sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 257 SLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred ccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 999999999999999999887 6789999999999999999999999988755443
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-23 Score=244.53 Aligned_cols=282 Identities=22% Similarity=0.370 Sum_probs=242.9
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE--EEEecCCCCeEE-EEEcC-CCCEEEEEECCC
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL--ASCRGHEGDITD-LAVSS-NNALVASASNDC 307 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l--~tL~gH~~~Vts-LafSP-DG~lLASGS~DG 307 (1491)
.+++-+.|.||...|..+++.+.. .++++|.||+++||+-.....+ ..+.+|.+.|.+ +++-+ ++-.|++|+.|.
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 356778999999999999887654 7999999999999998655544 356788888888 88885 555799999999
Q ss_pred eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s 387 (1491)
+|.+|.+....++.+|.+|...|.++....++ .|++|+.|.++++|-+.... ..
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~----~~iSgSWD~TakvW~~~~l~--~~-------------------- 135 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG----TLISGSWDSTAKVWRIGELV--YS-------------------- 135 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcC----ceEecccccceEEecchhhh--cc--------------------
Confidence 99999999999999999999999999987776 59999999999999765322 11
Q ss_pred CCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCC
Q 000454 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1491)
Q Consensus 388 ~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1491)
..+|...|+++++-|.+ .+++|+.|.+|++|.- ...+..+.+|.+.|+.+++-++.
T Consensus 136 l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-----------~~~l~tf~gHtD~VRgL~vl~~~------------ 191 (745)
T KOG0301|consen 136 LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-----------GTLLKTFSGHTDCVRGLAVLDDS------------ 191 (745)
T ss_pred cCCcchheeeeeecCCC-cEEeccCcceeeeccC-----------CchhhhhccchhheeeeEEecCC------------
Confidence 35699999999999988 8999999999999987 45788999999999999999864
Q ss_pred CCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000454 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1491)
Q Consensus 468 ~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1491)
.|++|+.||.|++|++.. ..+.+..+|..-|.++.
T Consensus 192 ---------------~flScsNDg~Ir~w~~~g------------------------------e~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 192 ---------------HFLSCSNDGSIRLWDLDG------------------------------EVLLEMHGHTNFVYSIS 226 (745)
T ss_pred ---------------CeEeecCCceEEEEeccC------------------------------ceeeeeeccceEEEEEE
Confidence 899999999999999853 45667788999999999
Q ss_pred EcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
..+++..+++++.|++++||+.. .+.+.+.-..-.|+++.+-+ ++.++ +|+.||.|+||...
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-NgDIv-vg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NGDIV-VGGSDGRVRVFTVD 288 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CCCEE-EeccCceEEEEEec
Confidence 88999999999999999999975 88888886677899999887 56665 68899999999875
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=223.49 Aligned_cols=274 Identities=19% Similarity=0.303 Sum_probs=204.6
Q ss_pred cCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CeEE-EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 000454 241 GHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMET-AYCL-ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317 (1491)
Q Consensus 241 GH~~~Vt~VaFSp-DG~~LATGS~DGtIrIWDl~T-g~~l-~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg 317 (1491)
.-.+.|.+|+||| ...+|+.||.||+|++|+++. |..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4568899999999 556677999999999999976 4433 344579999999999999999999999999999999999
Q ss_pred CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEE
Q 000454 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 397 (1491)
Q Consensus 318 k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~s 397 (1491)
+ +..+..|.++|.++.|-+... ...|++|+.|.+|++||.+....+.++.+| ..+++
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~-~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP---------------------eRvYa 161 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMN-YQCLVTGSWDKTLKFWDTRSSNPVATLQLP---------------------ERVYA 161 (347)
T ss_pred C-eeeeeecccceeEEEEecCCC-cceeEecccccceeecccCCCCeeeeeecc---------------------ceeee
Confidence 4 566777999999999988764 237999999999999999987777666542 23444
Q ss_pred EEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcccccc
Q 000454 398 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 477 (1491)
Q Consensus 398 lafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~ 477 (1491)
+..- ..+++++..+..|.+|+++.+.. .+..+..
T Consensus 162 ~Dv~--~pm~vVata~r~i~vynL~n~~t-----------e~k~~~S--------------------------------- 195 (347)
T KOG0647|consen 162 ADVL--YPMAVVATAERHIAVYNLENPPT-----------EFKRIES--------------------------------- 195 (347)
T ss_pred hhcc--CceeEEEecCCcEEEEEcCCCcc-----------hhhhhcC---------------------------------
Confidence 3332 23566666666777777643210 0111100
Q ss_pred ccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE
Q 000454 478 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1491)
Q Consensus 478 ~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS 557 (1491)
+..-.+.||+..+|....+.
T Consensus 196 ------------------------------------------------------------pLk~Q~R~va~f~d~~~~al 215 (347)
T KOG0647|consen 196 ------------------------------------------------------------PLKWQTRCVACFQDKDGFAL 215 (347)
T ss_pred ------------------------------------------------------------cccceeeEEEEEecCCceEe
Confidence 01123556666666666677
Q ss_pred EeccceEEEEECCCC--ceEEEEeCCCC---------CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCc
Q 000454 558 AIMDCRICVWNAADG--SLVHSLTGHTE---------STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF 626 (1491)
Q Consensus 558 Gs~DG~IrIWDl~tg--kll~tL~gHs~---------~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~ 626 (1491)
|+-.|.+-|..+..+ +.-.+|+.|.. .|++|+|+| -...|+|+|.||++.+||-.....+.....+..
T Consensus 216 GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q 294 (347)
T KOG0647|consen 216 GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ 294 (347)
T ss_pred eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEEecchhhhhhhccCcCCC
Confidence 777777777766665 33334555542 477899999 556777999999999999999999999999999
Q ss_pred ceEEEEEcCCCCEEEEEe
Q 000454 627 RLVDGKFSPDGASIILSD 644 (1491)
Q Consensus 627 ~VtslafSPDG~~LAsgs 644 (1491)
+|+++.|+.+|.++|.+.
T Consensus 295 pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 295 PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ccceeEecCCCCEEEEEe
Confidence 999999999999998763
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-21 Score=204.87 Aligned_cols=302 Identities=17% Similarity=0.249 Sum_probs=223.0
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC------Ce---------EEEEEecCCCCeEEEEEcCC
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET------AY---------CLASCRGHEGDITDLAVSSN 296 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T------g~---------~l~tL~gH~~~VtsLafSPD 296 (1491)
.+..+.+|. .+..|.+|+|+|.|.+.|.|+...+.+|.-... +. ..+.-+.|.+.|.|.+|+|+
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 456666666 567899999999999999999999998875421 11 11223468999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCCc-----eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecC
Q 000454 297 NALVASASNDCIIRVWRLPDGLP-----ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP 371 (1491)
Q Consensus 297 G~lLASGS~DGtIrVWDl~tgk~-----i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~ 371 (1491)
|.+||+|+.|.+|++.-+....+ -..|.-|.+.|..++|..+...
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s------------------------------ 150 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPES------------------------------ 150 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCc------------------------------
Confidence 99999999999999986643322 1234456677777777554321
Q ss_pred CCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec-CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEE
Q 000454 372 RPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450 (1491)
Q Consensus 372 ~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs-~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVa 450 (1491)
.|.+|++++ .|..|++-|..+ +..+..+.+|++.|.++-
T Consensus 151 -------------------------------~~~il~s~gagdc~iy~tdc~~---------g~~~~a~sghtghilaly 190 (350)
T KOG0641|consen 151 -------------------------------GGAILASAGAGDCKIYITDCGR---------GQGFHALSGHTGHILALY 190 (350)
T ss_pred -------------------------------CceEEEecCCCcceEEEeecCC---------CCcceeecCCcccEEEEE
Confidence 123333333 244455555533 345566778888776653
Q ss_pred -EccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCC
Q 000454 451 -FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1491)
Q Consensus 451 -fSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~ 529 (1491)
|+ +-+|++|+.|.+|++||++-........
T Consensus 191 swn----------------------------~~m~~sgsqdktirfwdlrv~~~v~~l~--------------------- 221 (350)
T KOG0641|consen 191 SWN----------------------------GAMFASGSQDKTIRFWDLRVNSCVNTLD--------------------- 221 (350)
T ss_pred Eec----------------------------CcEEEccCCCceEEEEeeeccceeeecc---------------------
Confidence 33 2389999999999999998532111000
Q ss_pred CCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 000454 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIV 609 (1491)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrI 609 (1491)
.....---....|.+++..|.|++|++|-.|....+||++.++.++.+..|+..|.++.|+| +..+++++++|..|++
T Consensus 222 -~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 222 -NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKL 299 (350)
T ss_pred -CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC-CceEEEEecccceEEE
Confidence 00000001235699999999999999999999999999999999999999999999999999 8899999999999999
Q ss_pred EeCCC----CceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 610 WDIWE----GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 610 WDl~t----Gk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
-|+.- .-++.....|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 300 tdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 300 TDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99842 12344555688888999999999999999999999999763
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-23 Score=236.92 Aligned_cols=281 Identities=19% Similarity=0.266 Sum_probs=232.2
Q ss_pred CCCEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCce
Q 000454 243 RNAVYCAIFDRSGR--YVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~--~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i 320 (1491)
.+.|.+++|+|... +.+|+| -.|.||+..+....+++......|.++.|-.||++||+|...|.|+|+|+.+...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 47899999999542 344444 47999999988888888888899999999999999999999999999998776778
Q ss_pred eeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEE
Q 000454 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1491)
Q Consensus 321 ~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slaf 400 (1491)
..+.+|+.+|..+.|+|.+. ..|++|++|+.+++||+.+......+ .+|...|.|.+|
T Consensus 104 R~~~ah~apv~~~~f~~~d~--t~l~s~sDd~v~k~~d~s~a~v~~~l--------------------~~htDYVR~g~~ 161 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDN--TMLVSGSDDKVVKYWDLSTAYVQAEL--------------------SGHTDYVRCGDI 161 (487)
T ss_pred HHHhhccCceeEEEecccCC--eEEEecCCCceEEEEEcCCcEEEEEe--------------------cCCcceeEeecc
Confidence 88999999999999999976 48899999999999999988742222 468999999999
Q ss_pred CCC-CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcccccccc
Q 000454 401 NAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 479 (1491)
Q Consensus 401 SPD-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~ 479 (1491)
+|. +..+++|+.||.|++||++... ....--.|..+|..+.+-|.|
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~---------~~v~elnhg~pVe~vl~lpsg------------------------ 208 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLT---------SRVVELNHGCPVESVLALPSG------------------------ 208 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCC---------ceeEEecCCCceeeEEEcCCC------------------------
Confidence 995 5589999999999999998621 222334688899999999875
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe
Q 000454 480 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI 559 (1491)
Q Consensus 480 ~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs 559 (1491)
..|++++ ...+++||+.++. ..+.....|...|+|+++..++..|++|+
T Consensus 209 --s~iasAg-Gn~vkVWDl~~G~----------------------------qll~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 209 --SLIASAG-GNSVKVWDLTTGG----------------------------QLLTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred --CEEEEcC-CCeEEEEEecCCc----------------------------eehhhhhcccceEEEEEeecCCceEeecc
Confidence 3555554 5689999998643 22333445889999999999999999999
Q ss_pred ccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 560 MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 560 ~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
-|+.|+|||+.+.+.++.+. ..++|.+++.+| +...++.|..+|.+.+-+..
T Consensus 258 LD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~-dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP-DDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred cccceEEEEccceEEEEeee-cccceeeEEecC-CCceEEEecccceeeeehhh
Confidence 99999999999999999886 678899999999 66677789999988877543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=222.86 Aligned_cols=249 Identities=19% Similarity=0.286 Sum_probs=202.7
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC--EEEEEECCCeE
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA--LVASASNDCII 309 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~--lLASGS~DGtI 309 (1491)
++.++..+..|.++|+|||.+ |.++|+||.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||.|
T Consensus 32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 345577888999999999996 89999999999999999999999999999999999999999765 89999999999
Q ss_pred EEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 310 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 310 rVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
.+|+.....++..+++|.+.|+.|+.+|.++ +-++.+.|+.+++|++-.|+......+
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K---LALsVg~D~~lr~WNLV~Gr~a~v~~L------------------- 167 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGK---LALSVGGDQVLRTWNLVRGRVAFVLNL------------------- 167 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCCc---eEEEEcCCceeeeehhhcCccceeecc-------------------
Confidence 9999999999999999999999999999998 888999999999999988875544432
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
......+.|+|.|.+|+.+..+ .|-||.+.... .+..
T Consensus 168 --~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~---------v~~~------------------------------- 204 (362)
T KOG0294|consen 168 --KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS---------VFRE------------------------------- 204 (362)
T ss_pred --CCcceeeEEcCCCCEEEEEecc-EEEEEecccHh---------Hhhh-------------------------------
Confidence 2223448888988888777654 35566654210 0000
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 549 (1491)
...+..+.++.|
T Consensus 205 -------------------------------------------------------------------i~~~~r~l~~~~- 216 (362)
T KOG0294|consen 205 -------------------------------------------------------------------IENPKRILCATF- 216 (362)
T ss_pred -------------------------------------------------------------------hhccccceeeee-
Confidence 000112334444
Q ss_pred CCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEe-cCCCcEEEEEeCCCcEEEEeCCCC
Q 000454 550 LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH-PFNPRIAMSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 550 PDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafS-Pdd~~lLaSgS~DGtIrIWDl~tG 615 (1491)
-++..|++|..|+.|.+||..+..+...+.+|...|.++.+- ...+.+|+|+|.||.|+|||+...
T Consensus 217 l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 217 LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 356789999999999999999999999999999999999843 225689999999999999999765
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=242.20 Aligned_cols=279 Identities=19% Similarity=0.269 Sum_probs=234.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCcccee
Q 000454 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1491)
Q Consensus 289 tsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i 368 (1491)
.-+.|+. .+.||.|. ...|.+|+..++........+...|+++.|+++|. +|++|..+|.|.|||....+.+..+
T Consensus 181 nlldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~---~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 181 NLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGS---HLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred hHhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCC---EEEEeecCCeEEEEehhhccccccc
Confidence 3466774 44666664 45799999999987666666689999999999998 9999999999999999877766554
Q ss_pred ecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceE
Q 000454 369 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY 448 (1491)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~s 448 (1491)
. ..|...|.+++|. +..+.+|+.++.|.++|++..+. .+..+.+|...|..
T Consensus 256 ~-------------------~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~--------~~~~~~~H~qeVCg 306 (484)
T KOG0305|consen 256 R-------------------GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH--------VVSTLQGHRQEVCG 306 (484)
T ss_pred c-------------------CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh--------hhhhhhcccceeee
Confidence 2 1278899999998 77899999999999999986432 22348899999999
Q ss_pred EEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCC
Q 000454 449 VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528 (1491)
Q Consensus 449 VafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~ 528 (1491)
+.|++++ .+|++|+.|+.+.|||...
T Consensus 307 Lkws~d~--------------------------~~lASGgnDN~~~Iwd~~~---------------------------- 332 (484)
T KOG0305|consen 307 LKWSPDG--------------------------NQLASGGNDNVVFIWDGLS---------------------------- 332 (484)
T ss_pred eEECCCC--------------------------CeeccCCCccceEeccCCC----------------------------
Confidence 9999986 6999999999999999853
Q ss_pred CCCCceeccCCCCCeeEEEEcCC-CCEEEEE--eccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEe-CC
Q 000454 529 RGGPRQRILPTPRGVNMIVWSLD-NRFVLAA--IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG-YD 604 (1491)
Q Consensus 529 ~~~~~~~l~~h~~~VtsVafSPD-G~~LaSG--s~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS-~D 604 (1491)
..+...+..|...|.+++|+|- ..+||+| +.|+.|++||..+|..+..+.. ...|..|.|++....++.+-| .+
T Consensus 333 -~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 333 -PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred -ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCC
Confidence 2456778899999999999995 4567775 4799999999999999998764 456999999996666766655 46
Q ss_pred CcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 605 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 605 GtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
+.|.||+..+.+++..+.+|...|..+++||||..|++|+.|.+|++|++-..
T Consensus 411 n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 411 NQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 78999999999999999999999999999999999999999999999998553
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=222.10 Aligned_cols=305 Identities=19% Similarity=0.258 Sum_probs=221.1
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE--EEEe--cCCCCeEEEEEcCCCCEE-EEEECCCeEE
Q 000454 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL--ASCR--GHEGDITDLAVSSNNALV-ASASNDCIIR 310 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l--~tL~--gH~~~VtsLafSPDG~lL-ASGS~DGtIr 310 (1491)
+.+|+||.+.|+|++|+.||++|||++.|++|+||++.+.... +.++ -.-+..+.++|.||-+-+ +++-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4579999999999999999999999999999999999864321 1111 112356889999997744 4455566899
Q ss_pred EEECCC---CCcee---------eeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCccc
Q 000454 311 VWRLPD---GLPIS---------VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378 (1491)
Q Consensus 311 VWDl~t---gk~i~---------~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~ 378 (1491)
+|.+.. |.... .-+-|.-.|..+-....+. +|++++.|..|.+|+++ |+.+..+..
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k---~imsas~dt~i~lw~lk-Gq~L~~idt-------- 226 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK---YIMSASLDTKICLWDLK-GQLLQSIDT-------- 226 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCce---EEEEecCCCcEEEEecC-Cceeeeecc--------
Confidence 997642 22111 1123566677777766665 99999999999999998 777766632
Q ss_pred CCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccc
Q 000454 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 458 (1491)
Q Consensus 379 g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as 458 (1491)
....-+.++.+|+|++||+++-.-.|.||.+.-.+ ....+....+..+.||...|..++|+++.
T Consensus 227 ------------nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k-dG~fqev~rvf~LkGH~saV~~~aFsn~S--- 290 (420)
T KOG2096|consen 227 ------------NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK-DGTFQEVKRVFSLKGHQSAVLAAAFSNSS--- 290 (420)
T ss_pred ------------ccccccceeeCCCCcEEEEecCCCCceEEEEEecc-CcchhhhhhhheeccchhheeeeeeCCCc---
Confidence 22334578899999999999999999999985322 23344456677899999999999999985
Q ss_pred ccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 459 RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 459 ~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
.++++.|.||+++|||+.-+....... +.++. ++. -+..
T Consensus 291 -----------------------~r~vtvSkDG~wriwdtdVrY~~~qDp-----k~Lk~------------g~~-pl~a 329 (420)
T KOG2096|consen 291 -----------------------TRAVTVSKDGKWRIWDTDVRYEAGQDP-----KILKE------------GSA-PLHA 329 (420)
T ss_pred -----------------------ceeEEEecCCcEEEeeccceEecCCCc-----hHhhc------------CCc-chhh
Confidence 689999999999999987422111100 00000 000 0111
Q ss_pred CCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEE-eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL-~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
.......++++|.|+.||.+. ...|++|..++|+..-.+ ..|...|.+|+|++ ++++++|+| |..++++.-
T Consensus 330 ag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 330 AGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred cCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeeecC
Confidence 122334799999999888764 558999999999877766 46899999999999 788988887 667777653
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=237.66 Aligned_cols=285 Identities=18% Similarity=0.347 Sum_probs=237.1
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC--ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCc
Q 000454 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353 (1491)
Q Consensus 276 ~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk--~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGt 353 (1491)
+....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+.+.|.+++. .+++++.|+.
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~---~~iAas~d~~ 242 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNK---HVIAASNDKN 242 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCc---eEEeecCCCc
Confidence 3445667899999999999998999999999999999987665 6788888899999999999987 8999999999
Q ss_pred EEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCC
Q 000454 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1491)
Q Consensus 354 VrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~ 433 (1491)
+++|++...+...++ .+|...|+++.|......+++|+.|.+|++||+.+..+
T Consensus 243 ~r~Wnvd~~r~~~TL--------------------sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C------- 295 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTL--------------------SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC------- 295 (459)
T ss_pred eeeeeccchhhhhhh--------------------cccccceeeehhhccccceeeccccchhhhhhhhhhhe-------
Confidence 999999988766655 45999999999988777799999999999999975332
Q ss_pred ceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccc
Q 000454 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1491)
Q Consensus 434 ~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1491)
...+. ....+..|...+ ..+++|..|++|++||+++..
T Consensus 296 --~kt~l-~~S~cnDI~~~~----------------------------~~~~SgH~DkkvRfwD~Rs~~----------- 333 (459)
T KOG0288|consen 296 --SKTVL-PGSQCNDIVCSI----------------------------SDVISGHFDKKVRFWDIRSAD----------- 333 (459)
T ss_pred --ecccc-ccccccceEecc----------------------------eeeeecccccceEEEeccCCc-----------
Confidence 11111 122344444432 368899999999999998633
Q ss_pred cccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCC----CCCeEEEE
Q 000454 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH----TESTYVLD 589 (1491)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH----s~~VtsLa 589 (1491)
.....+..+.|+++..+++|..|.+++.|.++.+.|+.+....+.+.+. ....+.+.
T Consensus 334 -------------------~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 334 -------------------KTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred -------------------eeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 1222334458999999999999999999999999999999888877532 23478899
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCc--ceEEEEEcCCCCEEEEEeCCCcEEEE
Q 000454 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF--RLVDGKFSPDGASIILSDDVGQLYIL 652 (1491)
Q Consensus 590 fSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~--~VtslafSPDG~~LAsgs~DG~I~IW 652 (1491)
||| ++.|+++||.||.|+||++.+|++...+..... .|+++.|+|-|..|++++.++.+.+|
T Consensus 395 fSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 395 FSP-DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ECC-CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999 889999999999999999999999998876555 49999999999999999999999999
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-21 Score=222.41 Aligned_cols=295 Identities=16% Similarity=0.184 Sum_probs=212.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCCceeeeccCCCceEEE
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAI 333 (1491)
Q Consensus 255 G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lL-ASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsL 333 (1491)
+..+++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 35788999999999999999999998886544 6789999999976 5667789999999999988777765443 5678
Q ss_pred EecCCCCceEEE-EEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC
Q 000454 334 AFSPRPGSVYQL-LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS 412 (1491)
Q Consensus 334 aFSPdg~s~~~L-aSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~ 412 (1491)
+|+|+++ .+ ++++.++.|++||+.+...+..+. ....+.+++|+|+|.+++++..
T Consensus 79 ~~~~~g~---~l~~~~~~~~~l~~~d~~~~~~~~~~~---------------------~~~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 79 ALHPNGK---ILYIANEDDNLVTVIDIETRKVLAEIP---------------------VGVEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred EECCCCC---EEEEEcCCCCeEEEEECCCCeEEeEee---------------------CCCCcceEEECCCCCEEEEEec
Confidence 9999987 45 455678999999998766544431 1223578999999999998887
Q ss_pred Cc-eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeE-EEEeCC
Q 000454 413 DT-LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI-VTCSRD 490 (1491)
Q Consensus 413 DG-~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~L-aSgS~D 490 (1491)
++ .+.+||..+. .....+. ....+..+.|+|++ ..| +++..+
T Consensus 135 ~~~~~~~~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg--------------------------~~l~~~~~~~ 178 (300)
T TIGR03866 135 TTNMAHFIDTKTY---------EIVDNVL-VDQRPRFAEFTADG--------------------------KELWVSSEIG 178 (300)
T ss_pred CCCeEEEEeCCCC---------eEEEEEE-cCCCccEEEECCCC--------------------------CEEEEEcCCC
Confidence 65 5677888642 1222221 22345678898876 345 455679
Q ss_pred CeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE-eccceEEEEEC
Q 000454 491 GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNA 569 (1491)
Q Consensus 491 GtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG-s~DG~IrIWDl 569 (1491)
+.|.+||+.+.+..... ..... . ..........++|+|+|++++++ ..++.|.+||+
T Consensus 179 ~~v~i~d~~~~~~~~~~-------~~~~~----------~-----~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKI-------TFEIP----------G-----VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred CEEEEEEcCcceeeeee-------eeccc----------c-----cccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 99999999875421110 00000 0 00001123468899999986554 45678999999
Q ss_pred CCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcC
Q 000454 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSP 635 (1491)
Q Consensus 570 ~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSP 635 (1491)
.+++.+..+. +...+.+++|+|++..++++++.+|.|+|||+.+++++..+..+ ...+.++|+|
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 237 KTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 9998877654 34578999999955544444567999999999999999999855 5568888876
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-23 Score=234.78 Aligned_cols=289 Identities=16% Similarity=0.281 Sum_probs=231.1
Q ss_pred EEEEccCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000454 236 IKRVRGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG-~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl 314 (1491)
+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....++.++..|.+.|..|++.. ..+++++.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45789999999999999976 7899999999999999999999999999999999999986 67889999999999997
Q ss_pred CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
.- .++.++.+ ...+..|.-+..+. .++++|.+ |.|||..-...+..+. -....
T Consensus 137 ~~-~p~~tilg-~s~~~gIdh~~~~~---~FaTcGe~--i~IWD~~R~~Pv~sms--------------------wG~Dt 189 (433)
T KOG0268|consen 137 DG-PPLHTILG-KSVYLGIDHHRKNS---VFATCGEQ--IDIWDEQRDNPVSSMS--------------------WGADS 189 (433)
T ss_pred cC-Ccceeeec-cccccccccccccc---cccccCce--eeecccccCCccceee--------------------cCCCc
Confidence 54 46666653 34566776666554 78888865 9999997666555552 24567
Q ss_pred eEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 395 IFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 395 V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
|.++.|+|-. .+|++++.|+.|.|||++.... .+.+. -...-+.|+|+|.+
T Consensus 190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~P------l~KVi----~~mRTN~IswnPea------------------ 241 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCASDRSIVLYDLRQASP------LKKVI----LTMRTNTICWNPEA------------------ 241 (433)
T ss_pred eeEEecCCCcchheeeeccCCceEEEecccCCc------cceee----eeccccceecCccc------------------
Confidence 9999999965 5677777999999999986432 11111 12345678999965
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1491)
..|++++.|..+..+|++... .++....+|...|..+.|||.|+
T Consensus 242 --------fnF~~a~ED~nlY~~DmR~l~----------------------------~p~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 242 --------FNFVAANEDHNLYTYDMRNLS----------------------------RPLNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred --------cceeeccccccceehhhhhhc----------------------------ccchhhcccceeEEEeccCCCcc
Confidence 479999999999999998532 45566778999999999999999
Q ss_pred EEEEEeccceEEEEECCCCceEEEEeC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000454 554 FVLAAIMDCRICVWNAADGSLVHSLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl~tgkll~tL~g-Hs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l 618 (1491)
-+++|+.|.+|+||.+..+...-.+.. --..|.|+.|+- +.+++++|+.|+.|++|.....+.+
T Consensus 286 EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecchhhhc
Confidence 999999999999999987654433311 123589999998 7899999999999999987654443
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=238.28 Aligned_cols=283 Identities=19% Similarity=0.300 Sum_probs=238.9
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCce--eeeccCCCceEE-EEecCCCCceEEEEEEeCCC
Q 000454 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI--SVLRGHTAAVTA-IAFSPRPGSVYQLLSSSDDG 352 (1491)
Q Consensus 276 ~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i--~~L~gHs~~Vts-LaFSPdg~s~~~LaSgS~DG 352 (1491)
++-+.+.||...|..+++.+.. .+++++.||+++||+-.....+ ..+.+|.+.|.. +++-+..+ ..|++|+.|.
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~--~~l~~g~~D~ 81 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDK--GRLVVGGMDT 81 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccC--cceEeecccc
Confidence 4567889999999999987554 8999999999999997555433 456778888877 88876322 2699999999
Q ss_pred cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCC
Q 000454 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP 432 (1491)
Q Consensus 353 tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~ 432 (1491)
+|.+|.+.+......+ .+|...|.|++...++. +++|+.|.+++||..
T Consensus 82 ~i~v~~~~~~~P~~~L--------------------kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~----------- 129 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTL--------------------KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI----------- 129 (745)
T ss_pred eEEEEecCCCCchhhh--------------------hccccceeeeecCCcCc-eEecccccceEEecc-----------
Confidence 9999999877765554 56999999999888887 999999999999988
Q ss_pred CceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccc
Q 000454 433 NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQ 512 (1491)
Q Consensus 433 ~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~ 512 (1491)
......+.+|...|+++.+-|. +.++|||.|.+|++|.-.
T Consensus 130 ~~l~~~l~gH~asVWAv~~l~e---------------------------~~~vTgsaDKtIklWk~~------------- 169 (745)
T KOG0301|consen 130 GELVYSLQGHTASVWAVASLPE---------------------------NTYVTGSADKTIKLWKGG------------- 169 (745)
T ss_pred hhhhcccCCcchheeeeeecCC---------------------------CcEEeccCcceeeeccCC-------------
Confidence 4466679999999999999886 389999999999999532
Q ss_pred ccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEec
Q 000454 513 AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 513 ~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSP 592 (1491)
..+..+.+|...|+.+++-+++. +++++.||.|++|++ +|.++..+.||+.-|+++...+
T Consensus 170 ------------------~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 170 ------------------TLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred ------------------chhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC
Confidence 34567788999999999988754 778889999999999 8999999999999999999666
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 593 FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 593 dd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
+..+++|+|.|++++||+.. .+.+.+......|+++++-++|. |++|+.||.|+||.....
T Consensus 230 -~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 230 -SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred -CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 66788899999999999986 88888885566899999988886 788888999999998643
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=233.76 Aligned_cols=310 Identities=16% Similarity=0.199 Sum_probs=234.0
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC----ceeee-ccCCCceEEEEecCCCCceEEEEEEe
Q 000454 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL----PISVL-RGHTAAVTAIAFSPRPGSVYQLLSSS 349 (1491)
Q Consensus 275 g~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk----~i~~L-~gHs~~VtsLaFSPdg~s~~~LaSgS 349 (1491)
+.+-..+.+|+..|.++++.|.|-.|++|+.|.+|++||+.... ..+.+ ......|.+++|++.+. .|++.+
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~---~iLvvs 233 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD---QILVVS 233 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC---eEEEEe
Confidence 44556788999999999999999999999999999999996432 11222 23456899999999987 788888
Q ss_pred CCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCC
Q 000454 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDD 428 (1491)
Q Consensus 350 ~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~ 428 (1491)
.....+|+|-..........- ..-..-.....+|...++|.+|+|+. ..|++++.||+++||++...+..
T Consensus 234 g~aqakl~DRdG~~~~e~~KG--------DQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q- 304 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKG--------DQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ- 304 (641)
T ss_pred cCcceeEEccCCceeeeeecc--------chhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh-
Confidence 888999999765544333210 00111123456789999999999965 57889999999999999754311
Q ss_pred CCCCCceeee--ecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcc
Q 000454 429 SDQPNHEIDV--LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPK 506 (1491)
Q Consensus 429 s~~~~~~i~~--l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~ 506 (1491)
.+.+.. ..+..-.++..+|++++ ..|++|..||.|.+|+.......
T Consensus 305 ----~qVik~k~~~g~Rv~~tsC~~nrdg--------------------------~~iAagc~DGSIQ~W~~~~~~v~-- 352 (641)
T KOG0772|consen 305 ----LQVIKTKPAGGKRVPVTSCAWNRDG--------------------------KLIAAGCLDGSIQIWDKGSRTVR-- 352 (641)
T ss_pred ----eeEEeeccCCCcccCceeeecCCCc--------------------------chhhhcccCCceeeeecCCcccc--
Confidence 111111 12334578899999986 68999999999999998642211
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCceeccCCCC--CeeEEEEcCCCCEEEEEeccceEEEEECCCC-ceEEEEeCCCC
Q 000454 507 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR--GVNMIVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTE 583 (1491)
Q Consensus 507 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~--~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg-kll~tL~gHs~ 583 (1491)
.....-..|.. .|+||+||+||++|++-+.|+++++||++.. +++.+..+-..
T Consensus 353 ------------------------p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t 408 (641)
T KOG0772|consen 353 ------------------------PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT 408 (641)
T ss_pred ------------------------cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCc
Confidence 01111234544 7999999999999999999999999999874 45555544322
Q ss_pred --CeEEEEEecCCCcEEEEEe------CCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 584 --STYVLDVHPFNPRIAMSAG------YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 584 --~VtsLafSPdd~~lLaSgS------~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
+-+.++||| +.++|+||. ..|.+.+||..+...+..+......|..+.|+|--+.|++|+.||.++||=
T Consensus 409 ~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 409 PFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred cCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 456789999 677888875 357899999999999999988888999999999999999999999999874
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=221.47 Aligned_cols=324 Identities=20% Similarity=0.277 Sum_probs=253.4
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecC
Q 000454 258 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337 (1491)
Q Consensus 258 LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSP 337 (1491)
|++.-.+++++ .++++.+.||...|+.++.......+.+++.|.+.+||.+++|+|+..+.||.+.|.+|.|++
T Consensus 127 ivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~ 200 (481)
T KOG0300|consen 127 IVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN 200 (481)
T ss_pred heeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc
Confidence 44445556543 346677889999999999988778999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEeCCCcEEEEccCCCCccceeecCCC-------------CC------cccC-CCCCCCCCCCCCCcceEE
Q 000454 338 RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP-------------SD------AVAG-RNMAPSSSAGPQSHQIFC 397 (1491)
Q Consensus 338 dg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~-------------~~------~~~g-~~~~~~~s~~~h~~~V~s 397 (1491)
.+. ++++++.|++-.||...-.-.++.-..+.. .. ...+ ..-.+...+.+|...|.+
T Consensus 201 s~~---L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 201 SGL---LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccc---eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 886 899999999999997431111111000000 00 0000 011223445678889999
Q ss_pred EEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcccccc
Q 000454 398 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 477 (1491)
Q Consensus 398 lafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~ 477 (1491)
+.|-..|..+++++.|.+..+||+++ +..+..+.||....+.++-+|..
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEt---------ge~v~~LtGHd~ELtHcstHptQ---------------------- 326 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVET---------GEVVNILTGHDSELTHCSTHPTQ---------------------- 326 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeecc---------CceeccccCcchhccccccCCcc----------------------
Confidence 99999999999999999999999987 56788899999999988888763
Q ss_pred ccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE
Q 000454 478 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1491)
Q Consensus 478 ~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS 557 (1491)
.++++.+.|.+.++||++.. ...+..+.+|...|+++.|..+. .+++
T Consensus 327 ----rLVvTsSrDtTFRLWDFRea----------------------------I~sV~VFQGHtdtVTS~vF~~dd-~vVS 373 (481)
T KOG0300|consen 327 ----RLVVTSSRDTTFRLWDFREA----------------------------IQSVAVFQGHTDTVTSVVFNTDD-RVVS 373 (481)
T ss_pred ----eEEEEeccCceeEeccchhh----------------------------cceeeeecccccceeEEEEecCC-ceee
Confidence 68899999999999999831 13455678999999999998875 5889
Q ss_pred EeccceEEEEECCCCc-eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE-----eeCCcceEEE
Q 000454 558 AIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY-----EISRFRLVDG 631 (1491)
Q Consensus 558 Gs~DG~IrIWDl~tgk-ll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l-----~~h~~~Vtsl 631 (1491)
|+.|.+|+|||+++.+ ++.++. -..+++.++++. +..+++.--.+..|++||+ +|..+..+ ++|..-|+|+
T Consensus 374 gSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDl-nG~RlaRlPrtsRqgHrRMV~c~ 450 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDL-NGNRLARLPRTSRQGHRRMVTCC 450 (481)
T ss_pred cCCCceEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEec-CCCccccCCcccccccceeeeee
Confidence 9999999999998854 566665 356788999988 7778887888889999999 56555544 3566789999
Q ss_pred EEcCCC--CEEEEEeCCCcEEEEECCCC
Q 000454 632 KFSPDG--ASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 632 afSPDG--~~LAsgs~DG~I~IWdl~tG 657 (1491)
+|..+- .-|++++-|..+.-|.+...
T Consensus 451 AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 451 AWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eccccCcccccccccccceeeeeEeccc
Confidence 998654 45788899999999998653
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=204.58 Aligned_cols=299 Identities=22% Similarity=0.359 Sum_probs=236.1
Q ss_pred ccccccccccccCccccccCCCcceeeeccccCCC------cccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCe
Q 000454 193 DQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPS------TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRL 266 (1491)
Q Consensus 193 d~V~~l~~r~~Gg~~~~~~~~~sl~s~~~~~a~~~------~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGt 266 (1491)
..|+.+.|.+.|+.++.....+.++...|...+.. ..+...-..++-+.|.+.|+|++|+|+|.+||||+.|.+
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 45788889999998888888888877766432211 111122344566789999999999999999999999999
Q ss_pred EEEEECCCCeEE-----EEEecCCCCeEEEEEcCC----CCEEEEEEC-CCeEEEEECCCCCceeeeccCCCceEEEE-e
Q 000454 267 VKIWSMETAYCL-----ASCRGHEGDITDLAVSSN----NALVASASN-DCIIRVWRLPDGLPISVLRGHTAAVTAIA-F 335 (1491)
Q Consensus 267 IrIWDl~Tg~~l-----~tL~gH~~~VtsLafSPD----G~lLASGS~-DGtIrVWDl~tgk~i~~L~gHs~~VtsLa-F 335 (1491)
|++.-.....+. ..|.-|.+.|.+++|-.+ +.+|++++. |..|.+-|..+|+..+.+.+|++.|.++- |
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw 192 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW 192 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe
Confidence 999876543332 246679999999999653 457777654 78889999999999999999999998874 4
Q ss_pred cCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCce
Q 000454 336 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415 (1491)
Q Consensus 336 SPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~ 415 (1491)
+. - .+++|+.|.+|++||++-..++..+...... .+-....|.+++..|.|++|++|-.|..
T Consensus 193 n~--~---m~~sgsqdktirfwdlrv~~~v~~l~~~~~~-------------~glessavaav~vdpsgrll~sg~~dss 254 (350)
T KOG0641|consen 193 NG--A---MFASGSQDKTIRFWDLRVNSCVNTLDNDFHD-------------GGLESSAVAAVAVDPSGRLLASGHADSS 254 (350)
T ss_pred cC--c---EEEccCCCceEEEEeeeccceeeeccCcccC-------------CCcccceeEEEEECCCcceeeeccCCCc
Confidence 33 2 8999999999999999988777666322111 1123467999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEE
Q 000454 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAII 495 (1491)
Q Consensus 416 IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrI 495 (1491)
..+||++. .+.+..+..|...|.++.|+|.. .++++|+.|..|++
T Consensus 255 c~lydirg---------~r~iq~f~phsadir~vrfsp~a--------------------------~yllt~syd~~ikl 299 (350)
T KOG0641|consen 255 CMLYDIRG---------GRMIQRFHPHSADIRCVRFSPGA--------------------------HYLLTCSYDMKIKL 299 (350)
T ss_pred eEEEEeeC---------CceeeeeCCCccceeEEEeCCCc--------------------------eEEEEecccceEEE
Confidence 99999976 56788899999999999999975 58999999999999
Q ss_pred EecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEEC
Q 000454 496 WIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1491)
Q Consensus 496 WDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl 569 (1491)
-|+...- ...-++..+..|...+..+.|+|..--+++.+.|.++.+|-+
T Consensus 300 tdlqgdl-------------------------a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 300 TDLQGDL-------------------------AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred eecccch-------------------------hhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 9887411 011234445668888889999999988999999999999976
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=239.74 Aligned_cols=281 Identities=17% Similarity=0.282 Sum_probs=231.1
Q ss_pred CCCCEEEEEECCCeEEEEECCCCC------ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCC--ccc
Q 000454 295 SNNALVASASNDCIIRVWRLPDGL------PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ--FSP 366 (1491)
Q Consensus 295 PDG~lLASGS~DGtIrVWDl~tgk------~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~--~~~ 366 (1491)
|.+++|++|+.||.|++|++.... .+..+..|..+|..++.+.+++ .|++++.|-+|++|+...+. +..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~---tlIS~SsDtTVK~W~~~~~~~~c~s 111 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK---TLISASSDTTVKVWNAHKDNTFCMS 111 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC---ceEEecCCceEEEeecccCcchhHh
Confidence 467789999999999999986432 4778889999999999999987 89999999999999987653 332
Q ss_pred eeecCCCCCcccCCCCCCCCCCCCCCcceEEEEE-CCCCCEEEEecCCceEEEEeCCCCCC--CCCCCCCceeeee-cCC
Q 000454 367 RIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF-NANGTVFVTGSSDTLARVWNACKPNT--DDSDQPNHEIDVL-SGH 442 (1491)
Q Consensus 367 ~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slaf-SPDG~~LasGs~DG~IrVWDl~t~~~--~~s~~~~~~i~~l-~gH 442 (1491)
+ .+.|...|.|+++ -++..++|+||-|+.|.|||+.++.. ....... ....+ .++
T Consensus 112 t--------------------ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~-t~~sl~sG~ 170 (735)
T KOG0308|consen 112 T--------------------IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV-TVNSLGSGP 170 (735)
T ss_pred h--------------------hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc-ccccCCCCC
Confidence 2 3569999999999 77888999999999999999987522 1111111 22223 388
Q ss_pred CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCC
Q 000454 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1491)
Q Consensus 443 ~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~ 522 (1491)
...|++++..+.+ ..|++|+..+.|++||.++.+
T Consensus 171 k~siYSLA~N~t~--------------------------t~ivsGgtek~lr~wDprt~~-------------------- 204 (735)
T KOG0308|consen 171 KDSIYSLAMNQTG--------------------------TIIVSGGTEKDLRLWDPRTCK-------------------- 204 (735)
T ss_pred ccceeeeecCCcc--------------------------eEEEecCcccceEEecccccc--------------------
Confidence 8899999998875 489999999999999999744
Q ss_pred CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEe
Q 000454 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG 602 (1491)
Q Consensus 523 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS 602 (1491)
.+..+.+|...|..+..+.||+.+++++.||+|++||+...++++++..|...|+++..+| +=..+++|+
T Consensus 205 ---------kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~ 274 (735)
T KOG0308|consen 205 ---------KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGG 274 (735)
T ss_pred ---------ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecC
Confidence 3455679999999999999999999999999999999999999999999999999999998 667888999
Q ss_pred CCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 603 YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 603 ~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
.||.|..=|+.+......+.....+|..+..+...+-+-+++.|+.|.-|...
T Consensus 275 rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 275 RDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred CCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 99999999998854444443356678888877655556778888999999763
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-20 Score=219.53 Aligned_cols=471 Identities=13% Similarity=0.130 Sum_probs=306.1
Q ss_pred CCcceeeeccccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE--EecCCCCeEE
Q 000454 213 APSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS--CRGHEGDITD 290 (1491)
Q Consensus 213 ~~sl~s~~~~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~t--L~gH~~~Vts 290 (1491)
..+|.++.....+..|++.++++...+....++|++++.+|.+..++.|++||.+..++...+..... |.-.++.|.+
T Consensus 80 ~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 80 GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS 159 (691)
T ss_pred CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence 34566777778888899999999999999999999999999999999999999888889888876543 4445789999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCCceeeec--------cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC
Q 000454 291 LAVSSNNALVASASNDCIIRVWRLPDGLPISVLR--------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1491)
Q Consensus 291 LafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~--------gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg 362 (1491)
++|+|++..||+|+.||.|++||+.++..+.... +...-|+++.|..++ .|++|..-|+|.+||...+
T Consensus 160 lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~----tI~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 160 LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS----TIASGDSAGTVTFWDSIFG 235 (691)
T ss_pred EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC----cEEEecCCceEEEEcccCc
Confidence 9999999999999999999999999987766221 134568999999776 6999999999999999998
Q ss_pred CccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCC
Q 000454 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1491)
Q Consensus 363 ~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH 442 (1491)
.+++.+. .|...|.|++..+++..+++++.|+.|..|...+... .+........|
T Consensus 236 TLiqS~~--------------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~-----~wv~~~~r~~h 290 (691)
T KOG2048|consen 236 TLIQSHS--------------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS-----EWVINSRRDLH 290 (691)
T ss_pred chhhhhh--------------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc-----ceeeeccccCC
Confidence 8777663 3888999999999999999999999999888765322 13344556788
Q ss_pred CCCceEEEEccCccccccc-----cccCCCC-CCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccccc
Q 000454 443 ENDVNYVQFSGCAVASRFS-----LADSSKE-DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1491)
Q Consensus 443 ~~~V~sVafSpdg~as~~s-----~~~~~~~-~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1491)
...|.+++..++...+... +...... ...-...........+.++..+..+.+|...... .|. +
T Consensus 291 ~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~------lwr----l 360 (691)
T KOG2048|consen 291 AHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVD------LWR----L 360 (691)
T ss_pred cccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEecccccc------cee----c
Confidence 8899999988763211110 0000000 0000001111111222223333333344222110 000 0
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEE-----eCCCCCeEEEEEe
Q 000454 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-----TGHTESTYVLDVH 591 (1491)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL-----~gHs~~VtsLafS 591 (1491)
... ............+........|.+.++||+|++|+.+.- ..++||.+..-..+... ....-....+.|+
T Consensus 361 GS~--~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ft 437 (691)
T KOG2048|consen 361 GSV--ILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFT 437 (691)
T ss_pred cCc--ccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEE
Confidence 000 000000111122333445567999999999999998753 36778877542222221 1222346778888
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCc--eEEEEe--eCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccc----
Q 000454 592 PFNPRIAMSAGYDGKTIVWDIWEGI--PIRIYE--ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDA---- 663 (1491)
Q Consensus 592 Pdd~~lLaSgS~DGtIrIWDl~tGk--~l~~l~--~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~---- 663 (1491)
-+...+++..-.+..+.++++.+.. .+..+. .....|..+..||||+|||+.+..|.|.+|++.+++.....
T Consensus 438 id~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln 517 (691)
T KOG2048|consen 438 IDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLN 517 (691)
T ss_pred ecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccC
Confidence 7555555544477888888887643 333332 23447889999999999999999999999999998753222
Q ss_pred --cceeeec-CCCcceEEccCCCEEEccccccCccccCCCcccccc-CCCCCCcchhhhhhcccccccEEEcCCC
Q 000454 664 --KYDQFFL-GDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSA-MIPYPEPYQTMYQQRRLGALGIEWRPSS 734 (1491)
Q Consensus 664 --~~~~~fs-~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s-~~p~p~~~q~l~q~~~~~vl~lafSPDG 734 (1491)
.....|+ ..+..|+....+.-+++-... ..++....+..+ ++| ..+ +.....+.++.|+|.-
T Consensus 518 ~~vTa~~~~~~~~~~lvvats~nQv~efdi~---~~~l~~ws~~nt~nlp--k~~----~~l~~~~~gisfd~~n 583 (691)
T KOG2048|consen 518 IDVTAAAFSPFVRNRLVVATSNNQVFEFDIE---ARNLTRWSKNNTRNLP--KEP----KTLIPGIPGISFDPKN 583 (691)
T ss_pred cceeeeeccccccCcEEEEecCCeEEEEecc---hhhhhhhhhccccccc--cCh----hhcCCCCceEEeCCCC
Confidence 2445666 455556666555555542221 111222222222 222 222 2355667788888743
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-21 Score=238.61 Aligned_cols=266 Identities=16% Similarity=0.192 Sum_probs=199.2
Q ss_pred CceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CCCE
Q 000454 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTV 406 (1491)
Q Consensus 328 ~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG~~ 406 (1491)
..|....+++++. .+++++.+.....|+...+..+ +.... .|+.........+|...|.+++|+| ++.+
T Consensus 21 ~~i~~~~~~~d~~---~~~~~n~~~~a~~w~~~gg~~v--~~~~~-----~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~ 90 (493)
T PTZ00421 21 LNVTPSTALWDCS---NTIACNDRFIAVPWQQLGSTAV--LKHTD-----YGKLASNPPILLGQEGPIIDVAFNPFDPQK 90 (493)
T ss_pred eccccccccCCCC---CcEeECCceEEEEEecCCceEE--eeccc-----cccCCCCCceEeCCCCCEEEEEEcCCCCCE
Confidence 4456666777755 5788888888888987655321 11110 1111111223467899999999999 8899
Q ss_pred EEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEE
Q 000454 407 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT 486 (1491)
Q Consensus 407 LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaS 486 (1491)
|++|+.|+.|+||++...... ......+..+.+|...|.+++|+|.+ .++|++
T Consensus 91 LaSgS~DgtIkIWdi~~~~~~--~~~~~~l~~L~gH~~~V~~l~f~P~~-------------------------~~iLaS 143 (493)
T PTZ00421 91 LFTASEDGTIMGWGIPEEGLT--QNISDPIVHLQGHTKKVGIVSFHPSA-------------------------MNVLAS 143 (493)
T ss_pred EEEEeCCCEEEEEecCCCccc--cccCcceEEecCCCCcEEEEEeCcCC-------------------------CCEEEE
Confidence 999999999999999653211 11123567789999999999999974 358999
Q ss_pred EeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEE
Q 000454 487 CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICV 566 (1491)
Q Consensus 487 gS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrI 566 (1491)
++.|++|+|||+.+++ ....+..|...|.+++|+|+|.+|++++.|+.|+|
T Consensus 144 gs~DgtVrIWDl~tg~-----------------------------~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrI 194 (493)
T PTZ00421 144 AGADMVVNVWDVERGK-----------------------------AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI 194 (493)
T ss_pred EeCCCEEEEEECCCCe-----------------------------EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEE
Confidence 9999999999998632 22344567888999999999999999999999999
Q ss_pred EECCCCceEEEEeCCCCC-eEEEEEecCCCcEEEEE---eCCCcEEEEeCCCCc-eEEEEeeCC-cceEEEEEcCCCCEE
Q 000454 567 WNAADGSLVHSLTGHTES-TYVLDVHPFNPRIAMSA---GYDGKTIVWDIWEGI-PIRIYEISR-FRLVDGKFSPDGASI 640 (1491)
Q Consensus 567 WDl~tgkll~tL~gHs~~-VtsLafSPdd~~lLaSg---S~DGtIrIWDl~tGk-~l~~l~~h~-~~VtslafSPDG~~L 640 (1491)
||+.+++.+..+.+|.+. +..+.|.+.+..++.+| +.|+.|+|||+.+.. ++..+..+. ..+....|++|+.+|
T Consensus 195 wD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L 274 (493)
T PTZ00421 195 IDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLL 274 (493)
T ss_pred EECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEE
Confidence 999999999999999875 45678888555555444 258999999998754 444443333 355567899999999
Q ss_pred EEEe-CCCcEEEEECCCCcc
Q 000454 641 ILSD-DVGQLYILNTGQGES 659 (1491)
Q Consensus 641 Asgs-~DG~I~IWdl~tG~~ 659 (1491)
++++ .||.|++|++..++.
T Consensus 275 ~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 275 YIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred EEEEeCCCeEEEEEeeCCce
Confidence 9887 599999999987754
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=224.36 Aligned_cols=273 Identities=19% Similarity=0.266 Sum_probs=225.6
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCcee-----------------ee-ccCCCceEEEEecCCCC
Q 000454 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS-----------------VL-RGHTAAVTAIAFSPRPG 340 (1491)
Q Consensus 279 ~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~-----------------~L-~gHs~~VtsLaFSPdg~ 340 (1491)
..+..|.-+|++|+++|++.++++++.+|+|.=|++.+|+... .- ++|...|.+++.++|++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 3456799999999999999999999999999999998876330 11 26888999999999998
Q ss_pred ceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEe
Q 000454 341 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420 (1491)
Q Consensus 341 s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWD 420 (1491)
+|++|+.|..|.||+.++.+.+..+ .+|.+.|.+++|-.....|++++.|..|++|+
T Consensus 216 ---ylatgg~d~~v~Iw~~~t~ehv~~~--------------------~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 216 ---YLATGGRDRHVQIWDCDTLEHVKVF--------------------KGHRGAVSSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred ---EEEecCCCceEEEecCcccchhhcc--------------------cccccceeeeeeecCccceeeeecCCceEEEe
Confidence 9999999999999999998876654 45899999999998888999999999999999
Q ss_pred CCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEE-EeCCCeEEEEecC
Q 000454 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT-CSRDGSAIIWIPR 499 (1491)
Q Consensus 421 l~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaS-gS~DGtIrIWDl~ 499 (1491)
+.. ...+..+.+|.+.|..|..... ..++| |+.|+++++|++.
T Consensus 273 ~~~---------~s~vetlyGHqd~v~~IdaL~r---------------------------eR~vtVGgrDrT~rlwKi~ 316 (479)
T KOG0299|consen 273 IDQ---------LSYVETLYGHQDGVLGIDALSR---------------------------ERCVTVGGRDRTVRLWKIP 316 (479)
T ss_pred hhH---------hHHHHHHhCCccceeeechhcc---------------------------cceEEeccccceeEEEecc
Confidence 964 4567788999999998877643 24554 5599999999885
Q ss_pred CCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEe
Q 000454 500 SRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT 579 (1491)
Q Consensus 500 s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~ 579 (1491)
.. ....+.++...+-|++|-.+ ..+++|+.+|.|.+|++.+.+++.+..
T Consensus 317 ee------------------------------sqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 317 EE------------------------------SQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred cc------------------------------ceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEee
Confidence 31 12334566778889998654 678999999999999999988887653
Q ss_pred -CC-----------CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC----ceEEEEeeCCcceEEEEEcCCCCEEEEE
Q 000454 580 -GH-----------TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG----IPIRIYEISRFRLVDGKFSPDGASIILS 643 (1491)
Q Consensus 580 -gH-----------s~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG----k~l~~l~~h~~~VtslafSPDG~~LAsg 643 (1491)
+| ...|++|+..| +..++++|+.+|.|++|-+.+| .++..+. -.+-|+.++|+++|++|++|
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence 22 12789999999 8899999999999999999988 3445554 56679999999999988877
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-22 Score=213.24 Aligned_cols=259 Identities=23% Similarity=0.361 Sum_probs=207.9
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEEecCCCCeEEEEEcC--CCCEEEEEECCCeEEEE
Q 000454 238 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVW 312 (1491)
Q Consensus 238 tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg---~~l~tL~gH~~~VtsLafSP--DG~lLASGS~DGtIrVW 312 (1491)
.-.+|.+.|..+..+--|++|||++.|++|+|+.+... .++.+|.||.++|+.++|.. .|.+||+++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34579999999999999999999999999999999754 57889999999999999976 89999999999999999
Q ss_pred ECCCCC--ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCC
Q 000454 313 RLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1491)
Q Consensus 313 Dl~tgk--~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~ 390 (1491)
.-.+|+ .......|...|++|+|.|.+-. ..|++++.||.|.|.+++....-.. ......
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheyg-l~LacasSDG~vsvl~~~~~g~w~t-----------------~ki~~a 147 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYG-LLLACASSDGKVSVLTYDSSGGWTT-----------------SKIVFA 147 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccc-eEEEEeeCCCcEEEEEEcCCCCccc-----------------hhhhhc
Confidence 988773 34556789999999999998743 4899999999999998875411111 112245
Q ss_pred CCcceEEEEECCC---C-----------CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcc
Q 000454 391 QSHQIFCCAFNAN---G-----------TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1491)
Q Consensus 391 h~~~V~slafSPD---G-----------~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~ 456 (1491)
|.-.|++++|.|. | +.|++|+.|..|+||+.... ....-..+.+|.+.|+.++|.|...
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-------~w~~e~~l~~H~dwVRDVAwaP~~g 220 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-------SWKLERTLEGHKDWVRDVAWAPSVG 220 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-------chhhhhhhhhcchhhhhhhhccccC
Confidence 7788999999885 4 56999999999999998653 2344556899999999999999731
Q ss_pred ccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceec
Q 000454 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1491)
Q Consensus 457 as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 536 (1491)
+....|++|+.||++.||..... ...|.. ..+
T Consensus 221 ----------------------l~~s~iAS~SqDg~viIwt~~~e-----~e~wk~---------------------tll 252 (299)
T KOG1332|consen 221 ----------------------LPKSTIASCSQDGTVIIWTKDEE-----YEPWKK---------------------TLL 252 (299)
T ss_pred ----------------------CCceeeEEecCCCcEEEEEecCc-----cCcccc---------------------ccc
Confidence 11358999999999999976521 112211 112
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeccceEEEEEC
Q 000454 537 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1491)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl 569 (1491)
...+..+..+.||+.|.+|++++.|+.|.+|--
T Consensus 253 ~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 253 EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred ccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 234567899999999999999999999999964
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-22 Score=227.80 Aligned_cols=299 Identities=20% Similarity=0.300 Sum_probs=238.2
Q ss_pred EEeCC-CeEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCCceeeeccCCCceEEEEec
Q 000454 260 TGSDD-RLVKIWSMETAYCLASCRGH-EGDITDLAVSSNNALVASASN-DCIIRVWRLPDGLPISVLRGHTAAVTAIAFS 336 (1491)
Q Consensus 260 TGS~D-GtIrIWDl~Tg~~l~tL~gH-~~~VtsLafSPDG~lLASGS~-DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFS 336 (1491)
+++.| ..+.+||+.||..+.++++. ...-.++..- .+.+++++.. -..|.+|.+..........--.++|.+++-+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 33444 45999999999999999865 2222222211 2356666644 4579999987665554333456889999999
Q ss_pred CCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceE
Q 000454 337 PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 416 (1491)
Q Consensus 337 Pdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~I 416 (1491)
|.|. +|+.|+..|.|++|.+.+|.++..+ ..|-..|+|+.|+-||.+|++|+.||.|
T Consensus 91 n~G~---~l~ag~i~g~lYlWelssG~LL~v~--------------------~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 91 NLGY---FLLAGTISGNLYLWELSSGILLNVL--------------------SAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred CCce---EEEeecccCcEEEEEeccccHHHHH--------------------HhhccceeEEEEeCCCcEEEecCCCccE
Confidence 9986 7777779999999999999987766 3488889999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEE
Q 000454 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496 (1491)
Q Consensus 417 rVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIW 496 (1491)
.+|.+...-.........++..+..|.-.|+.+...+.+. ..+++|+|.|.++++|
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~------------------------~~rl~TaS~D~t~k~w 203 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT------------------------NARLYTASEDRTIKLW 203 (476)
T ss_pred EEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc------------------------cceEEEecCCceEEEE
Confidence 9999865433333335678889999999999999987641 3589999999999999
Q ss_pred ecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC-----
Q 000454 497 IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD----- 571 (1491)
Q Consensus 497 Dl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t----- 571 (1491)
|+..+. +......+..+.+++.+|-++.+++|+.+|.|.+.++..
T Consensus 204 dlS~g~------------------------------LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~ 253 (476)
T KOG0646|consen 204 DLSLGV------------------------------LLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS 253 (476)
T ss_pred Eeccce------------------------------eeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccc
Confidence 998643 222233556789999999999999999999999988754
Q ss_pred -----------CceEEEEeCCCC--CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCC
Q 000454 572 -----------GSLVHSLTGHTE--STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG 637 (1491)
Q Consensus 572 -----------gkll~tL~gHs~--~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG 637 (1491)
+..+..+.||.+ .|+|++++- ++.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|--
T Consensus 254 ~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 254 AGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred ccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 234567889998 999999998 88999999999999999999999999998778899999886653
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-21 Score=212.42 Aligned_cols=270 Identities=17% Similarity=0.271 Sum_probs=218.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCC
Q 000454 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~ 363 (1491)
....|.+|.|+|.+..|+++++||++++|++........+. |..++.+++|.++. .+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~----~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES----TIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc----eEEEeccCceEEEEEecCCc
Confidence 46789999999999999999999999999998886666665 99999999999975 69999999999999999876
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCC
Q 000454 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1491)
Q Consensus 364 ~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1491)
.... +.|...|.|+.+++-...+++|+.|++|++||.+.... ...+ ...
T Consensus 87 ~~~i---------------------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~---------~~~~-d~~ 135 (323)
T KOG1036|consen 87 EDQI---------------------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV---------VGTF-DQG 135 (323)
T ss_pred ceee---------------------ccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc---------cccc-ccC
Confidence 3322 45889999999999888999999999999999974211 1111 122
Q ss_pred CCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCC
Q 000454 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1491)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~ 523 (1491)
..|.++.... +.|++|..+..+.+||+++....
T Consensus 136 kkVy~~~v~g----------------------------~~LvVg~~~r~v~iyDLRn~~~~------------------- 168 (323)
T KOG1036|consen 136 KKVYCMDVSG----------------------------NRLVVGTSDRKVLIYDLRNLDEP------------------- 168 (323)
T ss_pred ceEEEEeccC----------------------------CEEEEeecCceEEEEEcccccch-------------------
Confidence 3677777663 58999999999999999973311
Q ss_pred CCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCC----ceEEEEeCCCC---------CeEEEEE
Q 000454 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG----SLVHSLTGHTE---------STYVLDV 590 (1491)
Q Consensus 524 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg----kll~tL~gHs~---------~VtsLaf 590 (1491)
...+.......+.||++-|++.-+++++-||.|.+=.+... .....|+.|.. +|++|+|
T Consensus 169 --------~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 169 --------FQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred --------hhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 01112233456899999999999999999999998777655 33446666643 6899999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeC
Q 000454 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD 645 (1491)
Q Consensus 591 SPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~ 645 (1491)
|| -...|||||.||.|.+||+.+.+.+..+......|..++|+.||..||+++.
T Consensus 241 hp-~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 241 HP-IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cc-ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99 4667889999999999999999999999877778999999999999999865
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-21 Score=237.28 Aligned_cols=216 Identities=10% Similarity=0.193 Sum_probs=166.3
Q ss_pred CcccccceeEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe--------EEEEEecCCCCeEEEEEcCCC
Q 000454 227 STMVQKMQNIKRVRGHRNAVYCAIFDRS-GRYVITGSDDRLVKIWSMETAY--------CLASCRGHEGDITDLAVSSNN 297 (1491)
Q Consensus 227 ~~~v~t~k~v~tL~GH~~~Vt~VaFSpD-G~~LATGS~DGtIrIWDl~Tg~--------~l~tL~gH~~~VtsLafSPDG 297 (1491)
.|...+...+..|.||.+.|.+++|+|+ +.+||||+.||+|+|||+.++. .+..+.+|...|.+|+|+|++
T Consensus 58 L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g 137 (568)
T PTZ00420 58 LENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN 137 (568)
T ss_pred eeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC
Confidence 3444455678899999999999999997 8999999999999999997642 345678999999999999998
Q ss_pred CE-EEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCc
Q 000454 298 AL-VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1491)
Q Consensus 298 ~l-LASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~ 376 (1491)
.. ||+++.|++|+|||+.+++.+..+. |...|.+++|+|++. +|++++.|+.|+|||++++..+..+.
T Consensus 138 ~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~---lLat~s~D~~IrIwD~Rsg~~i~tl~------- 206 (568)
T PTZ00420 138 YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN---LLSGTCVGKHMHIIDPRKQEIASSFH------- 206 (568)
T ss_pred CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC---EEEEEecCCEEEEEECCCCcEEEEEe-------
Confidence 75 5789999999999999998877776 667899999999998 89999999999999999987665542
Q ss_pred ccCCCCCCCCCCCCCCcc-----eEEEEECCCCCEEEEecCCc----eEEEEeCCCCCCCCCCCCCceeeee--cCCCCC
Q 000454 377 VAGRNMAPSSSAGPQSHQ-----IFCCAFNANGTVFVTGSSDT----LARVWNACKPNTDDSDQPNHEIDVL--SGHEND 445 (1491)
Q Consensus 377 ~~g~~~~~~~s~~~h~~~-----V~slafSPDG~~LasGs~DG----~IrVWDl~t~~~~~s~~~~~~i~~l--~gH~~~ 445 (1491)
.|.+. +....|++++.+|++++.++ .|+|||++.. ...+..+ ..+.+.
T Consensus 207 -------------gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~--------~~pl~~~~ld~~~~~ 265 (568)
T PTZ00420 207 -------------IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT--------TSALVTMSIDNASAP 265 (568)
T ss_pred -------------cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC--------CCceEEEEecCCccc
Confidence 13322 34455678999999887664 7999999742 1222222 222222
Q ss_pred ceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCC
Q 000454 446 VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 500 (1491)
Q Consensus 446 V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s 500 (1491)
+...-..++ +.++++|+.|++|++|++..
T Consensus 266 L~p~~D~~t--------------------------g~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 266 LIPHYDEST--------------------------GLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred eEEeeeCCC--------------------------CCEEEEEECCCeEEEEEccC
Confidence 222222222 35789999999999999875
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-20 Score=212.99 Aligned_cols=275 Identities=12% Similarity=0.074 Sum_probs=200.7
Q ss_pred CCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEE-EEEeCCCcEEEEccCCCCccceeecCCCCC
Q 000454 297 NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL-LSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1491)
Q Consensus 297 G~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~L-aSgS~DGtVrIWDl~tg~~~~~i~~~~~~~ 375 (1491)
+.++++++.|+.|++||+.+++.+..+..+. .+.+++|+|++. .+ ++++.++.|++||+.+++....+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~---~l~~~~~~~~~v~~~d~~~~~~~~~~~------ 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGK---LLYVCASDSDTIQVIDLATGEVIGTLP------ 70 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCC---EEEEEECCCCeEEEEECCCCcEEEecc------
Confidence 3578899999999999999999888887654 467899999987 44 667789999999998876544331
Q ss_pred cccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEe-cCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG-SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 376 ~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasG-s~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
....+..++|+|+++.++++ +.++.|++||+.+. ..+..+.. ...+.+++|+|+
T Consensus 71 ---------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~---------~~~~~~~~-~~~~~~~~~~~d 125 (300)
T TIGR03866 71 ---------------SGPDPELFALHPNGKILYIANEDDNLVTVIDIETR---------KVLAEIPV-GVEPEGMAVSPD 125 (300)
T ss_pred ---------------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCC---------eEEeEeeC-CCCcceEEECCC
Confidence 11224578999999877654 56899999999652 23333332 234678999988
Q ss_pred ccccccccccCCCCCCCccccccccCCCeEEEEeCCC-eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000454 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG-SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1491)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG-tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (1491)
+ ..+++++.++ .+.+||..+.+..
T Consensus 126 g--------------------------~~l~~~~~~~~~~~~~d~~~~~~~----------------------------- 150 (300)
T TIGR03866 126 G--------------------------KIVVNTSETTNMAHFIDTKTYEIV----------------------------- 150 (300)
T ss_pred C--------------------------CEEEEEecCCCeEEEEeCCCCeEE-----------------------------
Confidence 6 5777777665 4667787653210
Q ss_pred eeccCCCCCeeEEEEcCCCCEEEEEe-ccceEEEEECCCCceEEEEeCCCC-------CeEEEEEecCCCcEEEEEeCCC
Q 000454 534 QRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGSLVHSLTGHTE-------STYVLDVHPFNPRIAMSAGYDG 605 (1491)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs-~DG~IrIWDl~tgkll~tL~gHs~-------~VtsLafSPdd~~lLaSgS~DG 605 (1491)
.. ......+.+++|+|+|++|++++ .++.|++||+.+++.+..+..+.. ....++|+|++..++++.+.++
T Consensus 151 ~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 151 DN-VLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred EE-EEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 00 01122346789999999886554 689999999999988877653321 2346889996555555556677
Q ss_pred cEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCcccccc
Q 000454 606 KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILS-DDVGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 606 tIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsg-s~DG~I~IWdl~tG~~~~~~ 663 (1491)
.|.+||+.+++.+..+. +...+.+++|+|+|++|+++ ..+|.|.|||+.+++.+...
T Consensus 230 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred eEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 89999999998877664 34578899999999999886 46899999999998765544
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-21 Score=212.38 Aligned_cols=296 Identities=15% Similarity=0.154 Sum_probs=215.8
Q ss_pred CCCCcceEEEEECCCCCEEEEecCCceEEEEeCCC------CCCCC---CCCCCceeeeecCCCCCceEEEEccCccccc
Q 000454 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK------PNTDD---SDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 389 ~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t------~~~~~---s~~~~~~i~~l~gH~~~V~sVafSpdg~as~ 459 (1491)
..|...+.+.+|++||.++|+|+.|..|+|+|+.. ..... ..+....++++..|...|+++.|+|..
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre---- 184 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE---- 184 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh----
Confidence 34788899999999999999999999999999862 11111 112235678899999999999999974
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1491)
..|++|+.|++|++||+.... ..........
T Consensus 185 ----------------------~ILiS~srD~tvKlFDfsK~s---------------------------aKrA~K~~qd 215 (430)
T KOG0640|consen 185 ----------------------TILISGSRDNTVKLFDFSKTS---------------------------AKRAFKVFQD 215 (430)
T ss_pred ----------------------heEEeccCCCeEEEEecccHH---------------------------HHHHHHHhhc
Confidence 689999999999999987522 0111223345
Q ss_pred CCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEE---eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL---TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL---~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk 616 (1491)
...|.++.|+|.|.+|++|....++++||+.+.++...- .+|++.|+++.+++ .+.+.+||+.||.|+|||--+++
T Consensus 216 ~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~r 294 (430)
T KOG0640|consen 216 TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNR 294 (430)
T ss_pred cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHH
Confidence 567999999999999999999999999999998887644 47999999999999 77888899999999999999999
Q ss_pred eEEEEeeCC--cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccce-----eeecCCCcceEEccCCCEEEc-c
Q 000454 617 PIRIYEISR--FRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYD-----QFFLGDYRPLVQDTYGNVLDQ-E 688 (1491)
Q Consensus 617 ~l~~l~~h~--~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~-----~~fs~D~r~La~d~~G~vLde-~ 688 (1491)
|+.++...+ ..|.+..|..+|+||++.+.|..|++|.+.+|..+...... +.+.. ..+.-....+||.- +
T Consensus 295 Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rt--qAvFNhtEdyVl~pDE 372 (430)
T KOG0640|consen 295 CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRT--QAVFNHTEDYVLFPDE 372 (430)
T ss_pred HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhh--hhhhcCccceEEcccc
Confidence 999986433 36889999999999999999999999999999876543211 11100 00011122222211 0
Q ss_pred ccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEecc
Q 000454 689 TQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQP 753 (1491)
Q Consensus 689 tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~ 753 (1491)
.....-.|+-.+.. ...-+.-++.-.+.-+.-||.+.-++++ +.|...++|-
T Consensus 373 as~slcsWdaRtad----------r~~l~slgHn~a~R~i~HSP~~p~FmTc---sdD~raRFWy 424 (430)
T KOG0640|consen 373 ASNSLCSWDARTAD----------RVALLSLGHNGAVRWIVHSPVEPAFMTC---SDDFRARFWY 424 (430)
T ss_pred ccCceeeccccchh----------hhhhcccCCCCCceEEEeCCCCCceeee---cccceeeeee
Confidence 00000123321111 0111112344455668899999999999 9999999994
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=213.53 Aligned_cols=282 Identities=15% Similarity=0.187 Sum_probs=237.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCc
Q 000454 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1491)
Q Consensus 285 ~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~ 364 (1491)
...|+++...|....+++|+.|..+.++|..+++.+..+.||...|+.+.|+|+.. .+++++.|..|+||.......
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~---~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLD---TVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchh---heeecCCcceEEeeccccccC
Confidence 34678888888777999999999999999999999999999999999999999987 899999999999999876553
Q ss_pred cceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecC--C
Q 000454 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG--H 442 (1491)
Q Consensus 365 ~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g--H 442 (1491)
... ...|...|+.+..+|.|.||++++.|++..+.|++++ ..+..... .
T Consensus 296 ~~~--------------------~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g---------~~lt~vs~~~s 346 (506)
T KOG0289|consen 296 PTS--------------------SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG---------SQLTVVSDETS 346 (506)
T ss_pred ccc--------------------cccccccceeeeeccCCcEEEEecCCceEEEEEccCC---------cEEEEEeeccc
Confidence 322 2458899999999999999999999999999999764 33333332 2
Q ss_pred CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCC
Q 000454 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1491)
Q Consensus 443 ~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~ 522 (1491)
.-.+++.+|+|+| -.|.+|..||.++|||+.++.
T Consensus 347 ~v~~ts~~fHpDg--------------------------Lifgtgt~d~~vkiwdlks~~-------------------- 380 (506)
T KOG0289|consen 347 DVEYTSAAFHPDG--------------------------LIFGTGTPDGVVKIWDLKSQT-------------------- 380 (506)
T ss_pred cceeEEeeEcCCc--------------------------eEEeccCCCceEEEEEcCCcc--------------------
Confidence 3358999999997 489999999999999998632
Q ss_pred CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCC-CCeEEEEEecCCCcEEEEE
Q 000454 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT-ESTYVLDVHPFNPRIAMSA 601 (1491)
Q Consensus 523 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs-~~VtsLafSPdd~~lLaSg 601 (1491)
....+.+|.++|..|+|+.+|-|||+++.|+.|++||++.-+...++.-.. ..|.++.|.+ .+.+|+.+
T Consensus 381 ---------~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~ 450 (506)
T KOG0289|consen 381 ---------NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIA 450 (506)
T ss_pred ---------ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEee
Confidence 345567899999999999999999999999999999999888777775433 3689999998 67788888
Q ss_pred eCCCcEEEEeCC--CCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 602 GYDGKTIVWDIW--EGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 602 S~DGtIrIWDl~--tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
|.|=+|++++-. ...++..+..|.+..+.+.|...-++|++++.|..++++.+
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 887677776633 56788888888888999999999999999999998888764
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-21 Score=220.10 Aligned_cols=263 Identities=24% Similarity=0.362 Sum_probs=209.2
Q ss_pred cCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC----------eEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCe
Q 000454 241 GHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMETA----------YCLASCRGHEGDITDLAVSSNN-ALVASASNDCI 308 (1491)
Q Consensus 241 GH~~~Vt~VaFSpDG-~~LATGS~DGtIrIWDl~Tg----------~~l~tL~gH~~~VtsLafSPDG-~lLASGS~DGt 308 (1491)
-|.+.|+.+.+-|.. .+|||++..+.|.|||..+- .+-.+|.||...-+.|+|++.. -.|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 499999999999955 56778888999999998642 1223788999988899999954 48999999999
Q ss_pred EEEEECCCC-------CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCC
Q 000454 309 IRVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 381 (1491)
Q Consensus 309 IrVWDl~tg-------k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~ 381 (1491)
|++||+... .+...+.+|...|..++|++... .+|++++.|+.+.|||++++...
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~--~lF~sv~dd~~L~iwD~R~~~~~---------------- 263 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE--DLFGSVGDDGKLMIWDTRSNTSK---------------- 263 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccch--hhheeecCCCeEEEEEcCCCCCC----------------
Confidence 999999643 24567889999999999999865 38999999999999999963111
Q ss_pred CCCCCCCCCCCcceEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccc
Q 000454 382 MAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 382 ~~~~~s~~~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
+......|...|.|++|+| ++.+||+|+.|++|++||++.. ..++..+.+|...|..|.|+|.-
T Consensus 264 --~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL--------~~~lh~~e~H~dev~~V~WSPh~----- 328 (422)
T KOG0264|consen 264 --PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL--------NKPLHTFEGHEDEVFQVEWSPHN----- 328 (422)
T ss_pred --CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc--------ccCceeccCCCcceEEEEeCCCC-----
Confidence 1122355899999999999 5678899999999999999864 34788999999999999999975
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 540 (1491)
...|++++.|+.+.+||+..-...
T Consensus 329 --------------------etvLASSg~D~rl~vWDls~ig~e------------------------------------ 352 (422)
T KOG0264|consen 329 --------------------ETVLASSGTDRRLNVWDLSRIGEE------------------------------------ 352 (422)
T ss_pred --------------------CceeEecccCCcEEEEeccccccc------------------------------------
Confidence 468999999999999998741100
Q ss_pred CCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 541 ~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
. +++. ..|| -.+++..-.||...|..+.|+|..+..++|++.|+.+.||.+.
T Consensus 353 q-------~~ed------a~dg--------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 353 Q-------SPED------AEDG--------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred c-------Chhh------hccC--------CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 0 0000 0111 1344555678999999999999999999999999999999985
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-20 Score=214.56 Aligned_cols=143 Identities=20% Similarity=0.257 Sum_probs=121.6
Q ss_pred eeEEEEcC-CCCEEEEEeccceEEEEECCCC-------ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000454 543 VNMIVWSL-DNRFVLAAIMDCRICVWNAADG-------SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1491)
Q Consensus 543 VtsVafSP-DG~~LaSGs~DG~IrIWDl~tg-------kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t 614 (1491)
|+.+.|.| |...||+++.||.|+||.+..+ .+-..+.+|...|+.|.|||....+|+++++|-+|+|||+.+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 56667776 5568999999999999998764 345678899999999999998889999999999999999999
Q ss_pred CceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc--------cccccceeeecCCCcceEEccCCCEE
Q 000454 615 GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES--------QKDAKYDQFFLGDYRPLVQDTYGNVL 685 (1491)
Q Consensus 615 Gk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~--------~~~~~~~~~fs~D~r~La~d~~G~vL 685 (1491)
++....+.+|.+.|.+++|||||+.+|+.+.||+|+||....++. ....-..+.|.-|++.++......+-
T Consensus 710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S 788 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS 788 (1012)
T ss_pred hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccc
Confidence 999999999999999999999999999999999999999987764 11223456788888888776665543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=201.42 Aligned_cols=255 Identities=16% Similarity=0.225 Sum_probs=207.2
Q ss_pred CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceE
Q 000454 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1491)
Q Consensus 317 gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~ 396 (1491)
.++.+.+....+.|.+|.|+++|. +|++++.|.+|+|||...++++..+.. +...+.
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~---~litss~dDsl~LYd~~~g~~~~ti~s--------------------kkyG~~ 60 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGL---LLITSSEDDSLRLYDSLSGKQVKTINS--------------------KKYGVD 60 (311)
T ss_pred cccccccccCCCceeEEEecCCCC---EEEEecCCCeEEEEEcCCCceeeEeec--------------------cccccc
Confidence 345566666678999999999998 899999999999999999998888743 455678
Q ss_pred EEEECCCCCEEEEecC--CceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccc
Q 000454 397 CCAFNANGTVFVTGSS--DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1491)
Q Consensus 397 slafSPDG~~LasGs~--DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1491)
.++|....+.++.++. |.+|+..++.+ .+.++.+.||...|..|..+|..
T Consensus 61 ~~~Fth~~~~~i~sStk~d~tIryLsl~d---------NkylRYF~GH~~~V~sL~~sP~~------------------- 112 (311)
T KOG1446|consen 61 LACFTHHSNTVIHSSTKEDDTIRYLSLHD---------NKYLRYFPGHKKRVNSLSVSPKD------------------- 112 (311)
T ss_pred EEEEecCCceEEEccCCCCCceEEEEeec---------CceEEEcCCCCceEEEEEecCCC-------------------
Confidence 8888877777777776 88999999966 67899999999999999999974
Q ss_pred cccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCE
Q 000454 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 554 (1491)
Q Consensus 475 ~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~ 554 (1491)
+.|++++.|++|++||++..+..+.. +...-..+||.|.|-+
T Consensus 113 -------d~FlS~S~D~tvrLWDlR~~~cqg~l-------------------------------~~~~~pi~AfDp~GLi 154 (311)
T KOG1446|consen 113 -------DTFLSSSLDKTVRLWDLRVKKCQGLL-------------------------------NLSGRPIAAFDPEGLI 154 (311)
T ss_pred -------CeEEecccCCeEEeeEecCCCCceEE-------------------------------ecCCCcceeECCCCcE
Confidence 79999999999999999964422111 1112234899999999
Q ss_pred EEEEeccceEEEEECCCC--ceEEEEe---CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcce-
Q 000454 555 VLAAIMDCRICVWNAADG--SLVHSLT---GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL- 628 (1491)
Q Consensus 555 LaSGs~DG~IrIWDl~tg--kll~tL~---gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~V- 628 (1491)
+|++.....|++||++.- .+..++. +.....+.|.|+| ++++++.+...+.+.+.|.-+|..+..+..+...-
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN 233 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence 999988889999999763 3444443 3456789999999 55666667788999999999999999998765532
Q ss_pred --EEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 000454 629 --VDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1491)
Q Consensus 629 --tslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~ 661 (1491)
...+|+|||+++++|+.||+|.+|++.+|+...
T Consensus 234 ~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 234 LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 578999999999999999999999999997644
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-18 Score=197.74 Aligned_cols=333 Identities=26% Similarity=0.502 Sum_probs=259.6
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEEecCCC-CeEEEEE-cCCCC-EEEEEEC-CCeEEE
Q 000454 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-CLASCRGHEG-DITDLAV-SSNNA-LVASASN-DCIIRV 311 (1491)
Q Consensus 237 ~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~-~l~tL~gH~~-~VtsLaf-SPDG~-lLASGS~-DGtIrV 311 (1491)
..+.+|...|.++.|.+.+..++.++.|+.|.+|+...+. .+..+.++.. .+..+.+ ++++. +++..+. |+.+.+
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 3677899999999999999999999999999999999887 7777776443 7888888 88887 5555445 899999
Q ss_pred EECCC-CCceeeeccCCCceEEEEecCCCCceEEEEEEeC-CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 312 WRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 312 WDl~t-gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~-DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
|++.. ......+..|...|..++|+|++. .+++++. ++.+++|++..+.....+ .
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 195 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDGTIKLWDLRTGKPLSTL--------------------A 195 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCC---EEEecCCCCCceEEEEcCCCceEEee--------------------c
Confidence 99988 788888999999999999999987 7777775 999999999875544443 2
Q ss_pred CCCcceEEEEECCCCC-EEEEecCCceEEEEeCCCCCCCCCCCCCceee-eecCCCCCceEEEEccCccccccccccCCC
Q 000454 390 PQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~-~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1491)
.|...|.+++|+|++. .+++++.|+.|++|+... ...+. .+.+|...+ ...|++++
T Consensus 196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~---------~~~~~~~~~~~~~~~-~~~~~~~~------------ 253 (466)
T COG2319 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST---------GKLLRSTLSGHSDSV-VSSFSPDG------------ 253 (466)
T ss_pred cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC---------CcEEeeecCCCCcce-eEeECCCC------------
Confidence 2778899999999998 555558999999997753 33444 577787775 44777764
Q ss_pred CCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000454 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1491)
Q Consensus 468 ~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1491)
..+++++.|+.+++|++..... .......|...|.++.
T Consensus 254 --------------~~~~~~~~d~~~~~~~~~~~~~----------------------------~~~~~~~~~~~v~~~~ 291 (466)
T COG2319 254 --------------SLLASGSSDGTIRLWDLRSSSS----------------------------LLRTLSGHSSSVLSVA 291 (466)
T ss_pred --------------CEEEEecCCCcEEEeeecCCCc----------------------------EEEEEecCCccEEEEE
Confidence 4788999999999999885331 0111145677899999
Q ss_pred EcCCCCEEEEEeccceEEEEECCCCceEEEEe--CCCCCeEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCceEEEEeeC
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHPFN-PRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~--gHs~~VtsLafSPdd-~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h 624 (1491)
|.|++..+++++.|+.+.+|++.+........ .|...+..+.| +.+ ..++.++..|+.+.+|++.......... .
T Consensus 292 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~ 369 (466)
T COG2319 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE-G 369 (466)
T ss_pred ECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEec-C
Confidence 99999999999999899999999888777776 88888999999 533 3444444688999999998887333333 2
Q ss_pred CcceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCcc
Q 000454 625 RFRLVDGKFSPDGASIIL-SDDVGQLYILNTGQGES 659 (1491)
Q Consensus 625 ~~~VtslafSPDG~~LAs-gs~DG~I~IWdl~tG~~ 659 (1491)
...+..+.|++ ...++. +..++.+.+|+......
T Consensus 370 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG2319 370 HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSL 404 (466)
T ss_pred CceEEEEEECC-CCCEEEEecCCCceEEEecccCee
Confidence 22388899999 544444 68889999999866543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=212.59 Aligned_cols=279 Identities=15% Similarity=0.256 Sum_probs=217.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeec
Q 000454 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR 324 (1491)
Q Consensus 245 ~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~ 324 (1491)
.|+.++|-|||..|+.+.. ..+.|||...|.++.++++|...|.|++|+.||+.+|+|+.|..|.||+-.-.- +..+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY- 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-
Confidence 8999999999999888754 469999999999999999999999999999999999999999999999853211 2222
Q ss_pred cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC
Q 000454 325 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404 (1491)
Q Consensus 325 gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG 404 (1491)
.|...|.|+.|.|-.. .|++++-. ..-+|........... ....+.+++|..||
T Consensus 91 SH~D~IQCMsFNP~~h---~LasCsLs-dFglWS~~qK~V~K~k----------------------ss~R~~~CsWtnDG 144 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITH---QLASCSLS-DFGLWSPEQKSVSKHK----------------------SSSRIICCSWTNDG 144 (1081)
T ss_pred ccCCeeeEeecCchHH---Hhhhcchh-hccccChhhhhHHhhh----------------------hheeEEEeeecCCC
Confidence 5999999999999876 78887754 3678877654332221 34568999999999
Q ss_pred CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeE
Q 000454 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1491)
Q Consensus 405 ~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~L 484 (1491)
.+|+.|-.+|+|.|-+... .+...+..-.+...+|.+|+|+|.... ...+.+
T Consensus 145 qylalG~~nGTIsiRNk~g-------Eek~~I~Rpgg~Nspiwsi~~~p~sg~---------------------G~~di~ 196 (1081)
T KOG1538|consen 145 QYLALGMFNGTISIRNKNG-------EEKVKIERPGGSNSPIWSICWNPSSGE---------------------GRNDIL 196 (1081)
T ss_pred cEEEEeccCceEEeecCCC-------CcceEEeCCCCCCCCceEEEecCCCCC---------------------CccceE
Confidence 9999999999999986532 223344445567889999999987411 113577
Q ss_pred EEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceE
Q 000454 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI 564 (1491)
Q Consensus 485 aSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I 564 (1491)
++.....++.++.+.... +.....-.-...|+.+.++|.+++.|+.|+.+
T Consensus 197 aV~DW~qTLSFy~LsG~~------------------------------Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 197 AVADWGQTLSFYQLSGKQ------------------------------IGKDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred EEEeccceeEEEEeccee------------------------------ecccccCCCCchhheeccCCcEEEEccCCCce
Confidence 888888888888665311 11111122345688999999999999999999
Q ss_pred EEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 565 CVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 565 rIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
.+|.. .|-.+.++......|+.++.+| ++..++.|+.||+|..|++
T Consensus 247 ~~fTR-~GvrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 247 SLFTR-DGVRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEee-cCeEEeeccccceeEEEEEEcc-CCceEEEEEccCeeehhhh
Confidence 99974 5777888877888999999999 7788888999999988853
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=204.97 Aligned_cols=291 Identities=19% Similarity=0.301 Sum_probs=215.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeecc
Q 000454 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG 325 (1491)
Q Consensus 246 Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~g 325 (1491)
..|+.|++-|.+||.|+.||.|.|||+.|...-+.+.+|..+|++++||+||+.|+|++.|..|.+||+..|.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCC
Q 000454 326 HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1491)
Q Consensus 326 Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~ 405 (1491)
...+|+.+.|+|...+ .++++-.+..-.+-++..+. ..+ ++.. ..........+..|.+.|+
T Consensus 105 f~spv~~~q~hp~k~n--~~va~~~~~sp~vi~~s~~~--h~~-Lp~d-------------~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRN--KCVATIMEESPVVIDFSDPK--HSV-LPKD-------------DDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred ccCccceeeeccccCC--eEEEEEecCCcEEEEecCCc--eee-ccCC-------------CccccccccccccccCCCC
Confidence 7789999999998753 34444334334444443321 111 1100 0111122233447899999
Q ss_pred EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCC-CCceEEEEccCccccccccccCCCCCCCccccccccCCCeE
Q 000454 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE-NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1491)
Q Consensus 406 ~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~-~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~L 484 (1491)
+|++|...|.+.||+..+. ..+..++-.. ..|..+.++-.+ ..|
T Consensus 167 yIitGtsKGkllv~~a~t~---------e~vas~rits~~~IK~I~~s~~g--------------------------~~l 211 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETL---------ECVASFRITSVQAIKQIIVSRKG--------------------------RFL 211 (405)
T ss_pred EEEEecCcceEEEEecchh---------eeeeeeeechheeeeEEEEeccC--------------------------cEE
Confidence 9999999999999999763 3444444333 567778777664 689
Q ss_pred EEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceecc--CCCCCeeEEEEcCCCCEEEEEec-c
Q 000454 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL--PTPRGVNMIVWSLDNRFVLAAIM-D 561 (1491)
Q Consensus 485 aSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~--~h~~~VtsVafSPDG~~LaSGs~-D 561 (1491)
+.-+.|..|+.|++..--..+... ...+...+. .....-.+++||.+|.|+++|+. -
T Consensus 212 iiNtsDRvIR~ye~~di~~~~r~~--------------------e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~a 271 (405)
T KOG1273|consen 212 IINTSDRVIRTYEISDIDDEGRDG--------------------EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARA 271 (405)
T ss_pred EEecCCceEEEEehhhhcccCccC--------------------CcChhHHHHHHHhhhhhhheeecCCccEEEeccccc
Confidence 999999999999887311000000 001111111 12223467899999999988763 4
Q ss_pred ceEEEEECCCCceEEEEeCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 562 CRICVWNAADGSLVHSLTGHT-ESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 562 G~IrIWDl~tgkll~tL~gHs-~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
..++||....|.+++.|.|.. .....+.|+| -.-++++- ..|.|+||..
T Consensus 272 HaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 272 HALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred eeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEe
Confidence 579999999999999999988 4677899999 44455555 6889999987
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-20 Score=201.76 Aligned_cols=303 Identities=21% Similarity=0.313 Sum_probs=231.8
Q ss_pred EEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe-------E---EEE-----EecCCCCeEEEEEcC-CCCEE
Q 000454 238 RVRGHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMETAY-------C---LAS-----CRGHEGDITDLAVSS-NNALV 300 (1491)
Q Consensus 238 tL~GH~~~Vt~VaFSp-DG~~LATGS~DGtIrIWDl~Tg~-------~---l~t-----L~gH~~~VtsLafSP-DG~lL 300 (1491)
..+-|.+.|+++.+.+ .|+|+++|+.||.|.|||++... . +.. -.+|.-.|.++.|-| |..++
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3456889999999999 58999999999999999997543 1 111 126888999999999 66688
Q ss_pred EEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCC
Q 000454 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 301 ASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
.+++.|.+++|||..+-+....|. ..+.|++-+++|-.....++++|..+-.|++-|+..|.+...+
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L------------ 184 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL------------ 184 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee------------
Confidence 999999999999999988877776 6788999999998765668888889999999999999876655
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCC-EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccc
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPDG~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~ 459 (1491)
.+|...|.++.|+|... .|++|+.||.|++||++.. ..++..+..|..
T Consensus 185 --------sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra--------sgcf~~lD~hn~--------------- 233 (397)
T KOG4283|consen 185 --------SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA--------SGCFRVLDQHNT--------------- 233 (397)
T ss_pred --------ccccCceEEEEeccCceeEEEecCCCceEEEEEeecc--------cceeEEeecccC---------------
Confidence 56899999999999776 4688999999999999642 112222222221
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1491)
+. ....+.-..|
T Consensus 234 ------------------------------------------k~--------------------------~p~~~~n~ah 245 (397)
T KOG4283|consen 234 ------------------------------------------KR--------------------------PPILKTNTAH 245 (397)
T ss_pred ------------------------------------------cc--------------------------Cccccccccc
Confidence 00 0011123457
Q ss_pred CCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEe---CCCCCeEEEEE---ecCCCcEEEEEeCCCcEEEEeCC
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT---GHTESTYVLDV---HPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~---gHs~~VtsLaf---SPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
.+.|+.+||+.+|.++++.+.|..+++|+..+|+....-. .|... ..+++ +- +...++---.++.+.++.+-
T Consensus 246 ~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~-~~~~~~~~~~-~s~vfv~~p~~~~lall~~~ 323 (397)
T KOG4283|consen 246 YGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT-TSFAVHIQSM-DSDVFVLFPNDGSLALLNLL 323 (397)
T ss_pred cceeeeeeecccchhhhhccCccceEEeecccCccccccccccccccc-ccceEEEeec-ccceEEEEecCCeEEEEEcc
Confidence 7889999999999999999999999999998875422111 11111 11111 11 22333334456899999999
Q ss_pred CCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 614 EGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 614 tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
+|..++.+.+|-..|.+.+|-|+-+.+.+|+.|+.|..|-.
T Consensus 324 sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 324 EGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 99999999999778999999999999999999999999987
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-21 Score=220.92 Aligned_cols=245 Identities=19% Similarity=0.299 Sum_probs=202.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC------
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP------ 315 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~------ 315 (1491)
-.++|.|++-+|+|.+|+.|...|.|++|.+.+|.++..+.+|-..|+|+.|+-||.+|+||+.||.|.+|.+.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred ---CCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 316 ---DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 316 ---tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
+.+++..|..|+-+|+++...+.+.+ .+|++++.|.++++||+..+.++..+.+ .
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~-~rl~TaS~D~t~k~wdlS~g~LLlti~f---------------------p 217 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTN-ARLYTASEDRTIKLWDLSLGVLLLTITF---------------------P 217 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCcc-ceEEEecCCceEEEEEeccceeeEEEec---------------------C
Confidence 34778899999999999999877533 3899999999999999999988887754 4
Q ss_pred cceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCc
Q 000454 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1491)
Q Consensus 393 ~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1491)
..+.+++.+|-+..+++|+.+|.|.+.++... .+....|..-.+++.
T Consensus 218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~---------------~~~~~~v~~k~~~~~------------------ 264 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKL---------------SGQSAGVNQKGRHEE------------------ 264 (476)
T ss_pred CcceeEEEcccccEEEecCCcceEEeeehhcC---------------Ccccccccccccccc------------------
Confidence 56899999999999999999999999887431 111111110001110
Q ss_pred cccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCC--CeeEEEEcC
Q 000454 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR--GVNMIVWSL 550 (1491)
Q Consensus 473 ~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~--~VtsVafSP 550 (1491)
+.....+.+|.. .|+|++++-
T Consensus 265 ---------------------------------------------------------~t~~~~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 265 ---------------------------------------------------------NTQINVLVGHENESAITCLAIST 287 (476)
T ss_pred ---------------------------------------------------------cceeeeeccccCCcceeEEEEec
Confidence 112223445555 899999999
Q ss_pred CCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEE
Q 000454 551 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA 598 (1491)
Q Consensus 551 DG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lL 598 (1491)
||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|.-...+
T Consensus 288 DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 288 DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGII 335 (476)
T ss_pred CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccccee
Confidence 999999999999999999999999999987888999999977544443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=218.93 Aligned_cols=319 Identities=16% Similarity=0.217 Sum_probs=233.4
Q ss_pred eeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC--EEEEEECCCeEEE
Q 000454 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA--LVASASNDCIIRV 311 (1491)
Q Consensus 234 k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~--lLASGS~DGtIrV 311 (1491)
.+...++||++.|.||..+|.|.+||+|++||+|+||.+.||+|+.++. ..+.|.||+|+|.+. .||++- ...+.|
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEE
Confidence 3456788999999999999999999999999999999999999999987 466899999999765 455544 444667
Q ss_pred EECCCCCceeeeccCCCceEEEEecCCCCceEEEEEE----eCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCC
Q 000454 312 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS----SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1491)
Q Consensus 312 WDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSg----S~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s 387 (1491)
-+..-|..+....+ . . .|+++ ..++.+..|.-........- ...
T Consensus 469 vnp~~G~~~e~~~t--~-----------e---ll~~~~~~~~p~~~~~~W~~~~~~e~~~~----------------v~~ 516 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPT--K-----------E---LLASAPNESEPDAAVVTWSRASLDELEKG----------------VCI 516 (733)
T ss_pred eCccccchhhhcch--h-----------h---hhhcCCCccCCcccceeechhhhhhhccc----------------eEE
Confidence 66544422211110 0 0 11111 23456777754321111100 000
Q ss_pred CCCCCcceEEEEECCCCCEEEEecCC---ceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccccccc
Q 000454 388 AGPQSHQIFCCAFNANGTVFVTGSSD---TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1491)
Q Consensus 388 ~~~h~~~V~slafSPDG~~LasGs~D---G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~ 464 (1491)
.-.+...|..+.|+..|.+|++...+ ..|.|+++.... ....+....+.|.++.|+|..
T Consensus 517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~---------sQ~PF~kskG~vq~v~FHPs~--------- 578 (733)
T KOG0650|consen 517 VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK---------SQSPFRKSKGLVQRVKFHPSK--------- 578 (733)
T ss_pred EEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc---------ccCchhhcCCceeEEEecCCC---------
Confidence 11267789999999999999987654 468899886532 223444556789999999874
Q ss_pred CCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCee
Q 000454 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVN 544 (1491)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vt 544 (1491)
.+|++++ ...|+|||+.... .+..+......|.
T Consensus 579 -----------------p~lfVaT-q~~vRiYdL~kqe-----------------------------lvKkL~tg~kwiS 611 (733)
T KOG0650|consen 579 -----------------PYLFVAT-QRSVRIYDLSKQE-----------------------------LVKKLLTGSKWIS 611 (733)
T ss_pred -----------------ceEEEEe-ccceEEEehhHHH-----------------------------HHHHHhcCCeeee
Confidence 3455444 4679999987522 2334455667899
Q ss_pred EEEEcCCCCEEEEEeccceEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC------CCC--
Q 000454 545 MIVWSLDNRFVLAAIMDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI------WEG-- 615 (1491)
Q Consensus 545 sVafSPDG~~LaSGs~DG~IrIWDl~tg-kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl------~tG-- 615 (1491)
.++++|.|..|++|+.|+.++.||+.-. ++.+++.-|...|+.|+||+ .--++++|+.||++.|+-- ...
T Consensus 612 ~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpl 690 (733)
T KOG0650|consen 612 SMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPL 690 (733)
T ss_pred eeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCc
Confidence 9999999999999999999999999754 67788999999999999998 5568889999999999842 111
Q ss_pred -ceEEEEeeCCc----ceEEEEEcCCCCEEEEEeCCCcEEEE
Q 000454 616 -IPIRIYEISRF----RLVDGKFSPDGASIILSDDVGQLYIL 652 (1491)
Q Consensus 616 -k~l~~l~~h~~----~VtslafSPDG~~LAsgs~DG~I~IW 652 (1491)
-++..+.+|.. .|.++.|+|...+|++++.||+|++|
T Consensus 691 iVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 691 IVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 35566666644 58899999999999999999999998
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.2e-20 Score=202.31 Aligned_cols=282 Identities=16% Similarity=0.216 Sum_probs=213.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCcee
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~ 321 (1491)
....|..|.|+|.+..|+.++.||++++|++....+...++ |..++.+++|.+ ...+++|+.||.|+++|+.++....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence 35789999999999999999999999999999886666665 899999999997 4578999999999999998887654
Q ss_pred eeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEEC
Q 000454 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1491)
Q Consensus 322 ~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafS 401 (1491)
+..|...|.||.+++... .+++|+.|++|++||.+.......+ .....|.|+..+
T Consensus 90 -igth~~~i~ci~~~~~~~---~vIsgsWD~~ik~wD~R~~~~~~~~---------------------d~~kkVy~~~v~ 144 (323)
T KOG1036|consen 90 -IGTHDEGIRCIEYSYEVG---CVISGSWDKTIKFWDPRNKVVVGTF---------------------DQGKKVYCMDVS 144 (323)
T ss_pred -eccCCCceEEEEeeccCC---eEEEcccCccEEEEecccccccccc---------------------ccCceEEEEecc
Confidence 455999999999998766 8999999999999999874433332 133468888765
Q ss_pred CCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCC
Q 000454 402 ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1491)
Q Consensus 402 PDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~ 481 (1491)
|..|++|+.+..|.+||+++..... ...-..-.-.+.+|++.|++
T Consensus 145 --g~~LvVg~~~r~v~iyDLRn~~~~~-------q~reS~lkyqtR~v~~~pn~-------------------------- 189 (323)
T KOG1036|consen 145 --GNRLVVGTSDRKVLIYDLRNLDEPF-------QRRESSLKYQTRCVALVPNG-------------------------- 189 (323)
T ss_pred --CCEEEEeecCceEEEEEcccccchh-------hhccccceeEEEEEEEecCC--------------------------
Confidence 7789999999999999998743221 11112334467888888864
Q ss_pred CeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc
Q 000454 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561 (1491)
Q Consensus 482 ~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D 561 (1491)
.-+++++.||.|.+=.+...... . ...+.++.... ...-...-.+|++|+|+|--..||||+.|
T Consensus 190 eGy~~sSieGRVavE~~d~s~~~-~----skkyaFkCHr~-----------~~~~~~~~yPVNai~Fhp~~~tfaTgGsD 253 (323)
T KOG1036|consen 190 EGYVVSSIEGRVAVEYFDDSEEA-Q----SKKYAFKCHRL-----------SEKDTEIIYPVNAIAFHPIHGTFATGGSD 253 (323)
T ss_pred CceEEEeecceEEEEccCCchHH-h----hhceeEEeeec-----------ccCCceEEEEeceeEeccccceEEecCCC
Confidence 57899999999998666543100 0 00011100000 00000112469999999999999999999
Q ss_pred ceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEe
Q 000454 562 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG 602 (1491)
Q Consensus 562 G~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS 602 (1491)
|.|.+||+.+.+.+..|......|..++|+- ++.+||.|+
T Consensus 254 G~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~ 293 (323)
T KOG1036|consen 254 GIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIAS 293 (323)
T ss_pred ceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEe
Confidence 9999999999999999988878899999998 556666665
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.6e-20 Score=201.16 Aligned_cols=308 Identities=15% Similarity=0.168 Sum_probs=217.5
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC-----ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCc
Q 000454 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL-----PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353 (1491)
Q Consensus 279 ~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk-----~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGt 353 (1491)
..|++|...|++++|+.||++||+++.|+.|+||++.+.. +++.- -.-+.-+.++|.||... .++++-...+
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s--~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKS--VVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcce--EEEEEccCCE
Confidence 3678999999999999999999999999999999997642 11111 11235678999999873 5666667778
Q ss_pred EEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCC
Q 000454 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1491)
Q Consensus 354 VrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~ 433 (1491)
+++|-+...+-- ...+ . ............|...|..+-...++.+|++++.|..|.+|++. +
T Consensus 157 l~vyk~~K~~dG-~~~~----~---~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk----------G 218 (420)
T KOG2096|consen 157 LCVYKLVKKTDG-SGSH----H---FVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK----------G 218 (420)
T ss_pred EEEEEeeecccC-CCCc----c---cccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC----------C
Confidence 999976532210 0000 0 00000011223456667777777889999999999999999996 3
Q ss_pred ceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccc
Q 000454 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1491)
Q Consensus 434 ~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1491)
+.+..+......-+..+.+|+| ..+++++.--.+++|.+--.+. +.+
T Consensus 219 q~L~~idtnq~~n~~aavSP~G--------------------------RFia~~gFTpDVkVwE~~f~kd----G~f--- 265 (420)
T KOG2096|consen 219 QLLQSIDTNQSSNYDAAVSPDG--------------------------RFIAVSGFTPDVKVWEPIFTKD----GTF--- 265 (420)
T ss_pred ceeeeeccccccccceeeCCCC--------------------------cEEEEecCCCCceEEEEEeccC----cch---
Confidence 4455555555556677889987 6888898889999997653220 000
Q ss_pred cccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC-------CceEEEE----eCCC
Q 000454 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD-------GSLVHSL----TGHT 582 (1491)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t-------gkll~tL----~gHs 582 (1491)
........+.+|...|..+|||++.+.+++.+.||+++|||+.- .+.+.+. ..-.
T Consensus 266 --------------qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag 331 (420)
T KOG2096|consen 266 --------------QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAG 331 (420)
T ss_pred --------------hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcC
Confidence 11133456788999999999999999999999999999999842 2222222 1122
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-eCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 583 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 583 ~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~-~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
+.-..++.+| .+..|| .+....|+++..++|+....+. .|...|.+++|++||+++|++++ ..++++.-..|
T Consensus 332 ~~p~RL~lsP-~g~~lA-~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd-r~vrv~~ntpg 404 (420)
T KOG2096|consen 332 SEPVRLELSP-SGDSLA-VSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD-RYVRVIRNTPG 404 (420)
T ss_pred CCceEEEeCC-CCcEEE-eecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc-eeeeeecCCCc
Confidence 3334899999 556654 4445679999999998877775 46778999999999999999876 67777764333
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=219.33 Aligned_cols=312 Identities=18% Similarity=0.247 Sum_probs=216.6
Q ss_pred EEEEcC---CCCEEEEEeCCCeEEEEECCCCeE------EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC
Q 000454 248 CAIFDR---SGRYVITGSDDRLVKIWSMETAYC------LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1491)
Q Consensus 248 ~VaFSp---DG~~LATGS~DGtIrIWDl~Tg~~------l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk 318 (1491)
++.|++ ....||.+.+||.|.++|...... +..+..|.+.|.++.|-|....|++++.|.+|++||+.+..
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 356665 346899999999999999865432 34556899999999999976799999999999999999998
Q ss_pred ceee--eccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccc--e----eecCCCCC-cccCCCCCCCCCCC
Q 000454 319 PISV--LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSP--R----IYIPRPSD-AVAGRNMAPSSSAG 389 (1491)
Q Consensus 319 ~i~~--L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~--~----i~~~~~~~-~~~g~~~~~~~s~~ 389 (1491)
++.. +.+|.+.|.+++|.|.+. ..|++|+.||.|.|||++...... . ++...... ..............
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~--~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNP--AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred eecceeecccccccchhhhccCCC--cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 8776 889999999999999976 489999999999999998554111 0 00000000 00000000011122
Q ss_pred CCCcceEE---EEECCCCCEEEEecC-CceEEEEeCCCCCCCCCCCCCceeeeecCC---CCCceEEEEccCcccccccc
Q 000454 390 PQSHQIFC---CAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGH---ENDVNYVQFSGCAVASRFSL 462 (1491)
Q Consensus 390 ~h~~~V~s---lafSPDG~~LasGs~-DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH---~~~V~sVafSpdg~as~~s~ 462 (1491)
.+...|.. +.+..|...||+++. |+.|+|||+++.......++.. ...+..| ...+.++.....|
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~-~~~~~t~skrs~G~~nL~lDssG------- 283 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG-SDKYPTHSKRSVGQVNLILDSSG------- 283 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc-ccCccCcccceeeeEEEEecCCC-------
Confidence 33444444 555578888888777 9999999999876554444322 2222333 2234444444333
Q ss_pred ccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCC-
Q 000454 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR- 541 (1491)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~- 541 (1491)
.+|++.+.|+.|++|++.+... .+...+.++..
T Consensus 284 -------------------t~L~AsCtD~sIy~ynm~s~s~---------------------------sP~~~~sg~~~~ 317 (720)
T KOG0321|consen 284 -------------------TYLFASCTDNSIYFYNMRSLSI---------------------------SPVAEFSGKLNS 317 (720)
T ss_pred -------------------CeEEEEecCCcEEEEeccccCc---------------------------CchhhccCcccc
Confidence 4566556699999999986331 11111222211
Q ss_pred -CeeEEEEcCCCCEEEEEeccceEEEEECCCCc-eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000454 542 -GVNMIVWSLDNRFVLAAIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 542 -~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgk-ll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG 615 (1491)
-...-..+||+.+|++|+.|...++|.+.+.+ ....+.||.-.|++++|.|..-.-++|++.|.+++||++..+
T Consensus 318 sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 318 SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 12233578999999999999999999998765 456778999999999999966667778899999999999654
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=227.27 Aligned_cols=287 Identities=18% Similarity=0.299 Sum_probs=225.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eEEEEEecC---CCCeEEEEEcC-CCCEEEEEECCCeEEEEECC
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETA----YCLASCRGH---EGDITDLAVSS-NNALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg----~~l~tL~gH---~~~VtsLafSP-DG~lLASGS~DGtIrVWDl~ 315 (1491)
....+|+..++-..|+.++. ..++|+.+... .+...+++. .-.+.+|.|.. +.++||+++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 34567777898888888875 46788876532 222222221 12355677875 56799999999999999998
Q ss_pred C---CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 316 D---GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 316 t---gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
. .+.+..|..|...|+++.|++... ++|++|+.||+|++||++...-..++ .+..
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep--~iliSGSQDg~vK~~DlR~~~S~~t~--------------------~~nS 176 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEP--NILISGSQDGTVKCWDLRSKKSKSTF--------------------RSNS 176 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCc--cEEEecCCCceEEEEeeecccccccc--------------------cccc
Confidence 7 567778999999999999999865 59999999999999999987765554 2356
Q ss_pred cceEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCC
Q 000454 393 HQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1491)
Q Consensus 393 ~~V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1491)
..|..+.|+| .+..|+++...|.+++||++. +.+....+.+|.+.|.++.|+|+.
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq--------p~r~~~k~~AH~GpV~c~nwhPnr---------------- 232 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ--------PDRCEKKLTAHNGPVLCLNWHPNR---------------- 232 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccC--------chhHHHHhhcccCceEEEeecCCC----------------
Confidence 7799999999 578999999999999999984 466788899999999999999975
Q ss_pred ccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC
Q 000454 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551 (1491)
Q Consensus 472 ~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD 551 (1491)
.+|+||+.|+.|+|||+.+.+.. .........+|.+|.|-|.
T Consensus 233 ----------~~lATGGRDK~vkiWd~t~~~~~----------------------------~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 233 ----------EWLATGGRDKMVKIWDMTDSRAK----------------------------PKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred ----------ceeeecCCCccEEEEeccCCCcc----------------------------ceeEEeecceeeeeeeccC
Confidence 69999999999999999864311 1122344567999999998
Q ss_pred CCE-EEEEe--ccceEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000454 552 NRF-VLAAI--MDCRICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 552 G~~-LaSGs--~DG~IrIWDl~tg-kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG 615 (1491)
..+ ||+++ .|-.|+|||++.. -+.+++..|...++.++|-..+..++.+++.||+|..-.+.++
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 876 44443 4778999999764 4567889999999999997766788999999998876655544
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=201.04 Aligned_cols=264 Identities=15% Similarity=0.200 Sum_probs=212.1
Q ss_pred EEEEECCCeEEEEECCC------------CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccce
Q 000454 300 VASASNDCIIRVWRLPD------------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367 (1491)
Q Consensus 300 LASGS~DGtIrVWDl~t------------gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~ 367 (1491)
|++|+....|.-+++.- -.++..+..|.+.|++++.+-- ++++|+.|-+|+|||+.....+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~-----~~aSGssDetI~IYDm~k~~qlg~ 78 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGP-----YVASGSSDETIHIYDMRKRKQLGI 78 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecce-----eEeccCCCCcEEEEeccchhhhcc
Confidence 56666666555555421 1235667889999999999753 899999999999999998776665
Q ss_pred eecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCC--EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCC
Q 000454 368 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT--VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND 445 (1491)
Q Consensus 368 i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~--~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~ 445 (1491)
+ ..|.+.|+++.|.++-. .|++|+.||.|.+|+... +..+..+.+|.+.
T Consensus 79 l--------------------l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~---------W~~~~slK~H~~~ 129 (362)
T KOG0294|consen 79 L--------------------LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---------WELLKSLKAHKGQ 129 (362)
T ss_pred e--------------------eccccceEEEEecCCcchhheeeecCCCcEEEEEcCC---------eEEeeeecccccc
Confidence 5 34788999999999765 899999999999999964 7889999999999
Q ss_pred ceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCC
Q 000454 446 VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525 (1491)
Q Consensus 446 V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~ 525 (1491)
|+.++++|.+ ..-++.+.|+.+++|++-.++....
T Consensus 130 Vt~lsiHPS~--------------------------KLALsVg~D~~lr~WNLV~Gr~a~v------------------- 164 (362)
T KOG0294|consen 130 VTDLSIHPSG--------------------------KLALSVGGDQVLRTWNLVRGRVAFV------------------- 164 (362)
T ss_pred cceeEecCCC--------------------------ceEEEEcCCceeeeehhhcCcccee-------------------
Confidence 9999999986 5778899999999999987552111
Q ss_pred CCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC
Q 000454 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG 605 (1491)
Q Consensus 526 ~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DG 605 (1491)
..-....+.|.|+|.|.+++++..+ .|-||.+.+..+...+... ..+.++.|- ++..|++|+.|+
T Consensus 165 -----------~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l--~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 165 -----------LNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL--DGSELLVGGDNE 229 (362)
T ss_pred -----------eccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec--CCceEEEecCCc
Confidence 1111123448999999998888766 6899999887776665533 445666664 567788999999
Q ss_pred cEEEEeCCCCceEEEEeeCCcceEEEEE--cCCCCEEEEEeCCCcEEEEECCCC
Q 000454 606 KTIVWDIWEGIPIRIYEISRFRLVDGKF--SPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 606 tIrIWDl~tGk~l~~l~~h~~~Vtslaf--SPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
.|.+||..++.++..+.+|...|-++.+ .|++.+|++++.||.|+|||+...
T Consensus 230 ~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 230 WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9999999999999999999999999874 578999999999999999998654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=214.30 Aligned_cols=282 Identities=15% Similarity=0.204 Sum_probs=232.4
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---Cceeeecc--CCCceEEEEecCCCCceEEEEEEeCCCcEEEE
Q 000454 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW 357 (1491)
Q Consensus 283 gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg---k~i~~L~g--Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIW 357 (1491)
.|..-|.++++|...+++.||+. |.|+|||+... .++..+.. ....|.++.+.||+. .|++|+.-.+|.||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr---tLivGGeastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR---TLIVGGEASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc---eEEeccccceeeee
Confidence 48888999999999999999875 67999999643 34444442 357899999999998 89999999999999
Q ss_pred ccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceee
Q 000454 358 DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1491)
Q Consensus 358 Dl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1491)
|+..........+ ....-..+.++.+||.++.++++.||.|.|||+.. ...++
T Consensus 493 DLAapTprikael------------------tssapaCyALa~spDakvcFsccsdGnI~vwDLhn---------q~~Vr 545 (705)
T KOG0639|consen 493 DLAAPTPRIKAEL------------------TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN---------QTLVR 545 (705)
T ss_pred eccCCCcchhhhc------------------CCcchhhhhhhcCCccceeeeeccCCcEEEEEccc---------ceeee
Confidence 9986543222211 11223467789999999999999999999999975 56788
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccC
Q 000454 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1491)
Q Consensus 438 ~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~ 517 (1491)
.+.+|.+.+.||.++++| ..|.||+-|.+|+.||++.++...
T Consensus 546 qfqGhtDGascIdis~dG--------------------------tklWTGGlDntvRcWDlregrqlq------------ 587 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDG--------------------------TKLWTGGLDNTVRCWDLREGRQLQ------------ 587 (705)
T ss_pred cccCCCCCceeEEecCCC--------------------------ceeecCCCccceeehhhhhhhhhh------------
Confidence 999999999999999987 589999999999999999754211
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcE
Q 000454 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 597 (1491)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~l 597 (1491)
.......|.++.++|.+.+|++|-.++.+.|.... +.....+.-|..-|.++.|.+ .+++
T Consensus 588 ------------------qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~-cGkw 647 (705)
T KOG0639|consen 588 ------------------QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAY-CGKW 647 (705)
T ss_pred ------------------hhhhhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecc-cCce
Confidence 11234568899999999999999999999988864 555667778999999999999 7788
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 598 AMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 598 LaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
+++.|.|..+..|...-|..+.... ....|.++.+|-|.++|++|+.|..-.||.+
T Consensus 648 fvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 8899999999999999998887776 5668999999999999999999988888865
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=201.51 Aligned_cols=264 Identities=19% Similarity=0.250 Sum_probs=205.6
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---CceeeeccCCCceEEEEecC--CCCceEEEEEEeCCCcEEE
Q 000454 282 RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRGHTAAVTAIAFSP--RPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 282 ~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg---k~i~~L~gHs~~VtsLaFSP--dg~s~~~LaSgS~DGtVrI 356 (1491)
..|...|.++...-.|+.|||++.|++|+|+.++.. .++..|.||.++|+.++|.. .|. +|++++.||.|.|
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~---iLAScsYDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT---ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc---EeeEeecCceEEE
Confidence 468999999988889999999999999999999764 46788999999999999975 455 9999999999999
Q ss_pred EccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCC--CCEEEEecCCceEEEEeCCCCCCCCCCCCCc
Q 000454 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN--GTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1491)
Q Consensus 357 WDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPD--G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~ 434 (1491)
|.-.+++..+.. ....|...|++++|.|. |-.|++++.||.|.|.+.+... ...
T Consensus 85 Wke~~g~w~k~~------------------e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g------~w~ 140 (299)
T KOG1332|consen 85 WKEENGRWTKAY------------------EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG------GWT 140 (299)
T ss_pred EecCCCchhhhh------------------hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC------Ccc
Confidence 998887654433 22458889999999996 5789999999999999986521 123
Q ss_pred eeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccc
Q 000454 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1491)
Q Consensus 435 ~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1491)
.......|.-.|++++|.|... .|.+.
T Consensus 141 t~ki~~aH~~GvnsVswapa~~---------------------------------~g~~~-------------------- 167 (299)
T KOG1332|consen 141 TSKIVFAHEIGVNSVSWAPASA---------------------------------PGSLV-------------------- 167 (299)
T ss_pred chhhhhccccccceeeecCcCC---------------------------------Ccccc--------------------
Confidence 3445678999999999998631 00000
Q ss_pred ccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCc--eEEEEeCCCCCeEEEEEec
Q 000454 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS--LVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgk--ll~tL~gHs~~VtsLafSP 592 (1491)
.+.. . ..-+.|++|+.|..|+||...+++ +-++|.+|.+.|..++|.|
T Consensus 168 -----------------------~~~~-~------~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP 217 (299)
T KOG1332|consen 168 -----------------------DQGP-A------AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAP 217 (299)
T ss_pred -----------------------ccCc-c------cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhcc
Confidence 0000 0 002568888899999999887753 3456899999999999999
Q ss_pred CCC---cEEEEEeCCCcEEEEeCCCC---ceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 593 FNP---RIAMSAGYDGKTIVWDIWEG---IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 593 dd~---~lLaSgS~DGtIrIWDl~tG---k~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
.-+ ..||+|+.||+|.||..... -....+......++.+.||+.|..|++++.|..|.+|.-.
T Consensus 218 ~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 218 SVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 643 58999999999999987522 1222333345689999999999999999999999999853
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-20 Score=212.82 Aligned_cols=265 Identities=19% Similarity=0.331 Sum_probs=207.9
Q ss_pred cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC
Q 000454 325 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404 (1491)
Q Consensus 325 gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG 404 (1491)
.|.+.|+.+.+-|... ..+++.+..+.|.|||.....-..... + ...+.....+|...-+.++|++..
T Consensus 122 ~h~gEVnRaRymPQnp--~iVAt~t~~~dv~Vfd~tk~~s~~~~~---------~-~~~Pdl~L~gH~~eg~glsWn~~~ 189 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNP--NIVATKTSSGDVYVFDYTKHPSKPKAS---------G-ECRPDLRLKGHEKEGYGLSWNRQQ 189 (422)
T ss_pred cCCccchhhhhCCCCC--cEEEecCCCCCEEEEEeccCCCccccc---------c-cCCCceEEEeeccccccccccccc
Confidence 4899999999999876 478888999999999986543222210 0 112223344566667789999854
Q ss_pred -CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCe
Q 000454 405 -TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1491)
Q Consensus 405 -~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~ 483 (1491)
-.|++|+.|+.|++||+...... .........+.+|...|..++|++.. .+.
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~--~~~~~p~~~~~~h~~~VeDV~~h~~h-------------------------~~l 242 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKE--DKVVDPKTIFSGHEDVVEDVAWHPLH-------------------------EDL 242 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccC--CccccceEEeecCCcceehhhccccc-------------------------hhh
Confidence 47899999999999999754332 22244567789999999999999864 468
Q ss_pred EEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC-EEEEEeccc
Q 000454 484 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDC 562 (1491)
Q Consensus 484 LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSGs~DG 562 (1491)
|++++.|+.+.|||+++.. ..+......|...|+|++|+|-+. .||+|+.|+
T Consensus 243 F~sv~dd~~L~iwD~R~~~---------------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~ 295 (422)
T KOG0264|consen 243 FGSVGDDGKLMIWDTRSNT---------------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADK 295 (422)
T ss_pred heeecCCCeEEEEEcCCCC---------------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCC
Confidence 9999999999999999521 123445677899999999999654 578899999
Q ss_pred eEEEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC--------------ceEEEEeeCCcc
Q 000454 563 RICVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG--------------IPIRIYEISRFR 627 (1491)
Q Consensus 563 ~IrIWDl~tg-kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG--------------k~l~~l~~h~~~ 627 (1491)
+|++||+++. ++++++.+|...|.+|.|+|....+||++|.|+.+.|||+..- +++..-.+|...
T Consensus 296 tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~k 375 (422)
T KOG0264|consen 296 TVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAK 375 (422)
T ss_pred cEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccc
Confidence 9999999874 5788999999999999999999999999999999999998631 233444567778
Q ss_pred eEEEEEcCCCCEEE-EEeCCCcEEEEECC
Q 000454 628 LVDGKFSPDGASII-LSDDVGQLYILNTG 655 (1491)
Q Consensus 628 VtslafSPDG~~LA-sgs~DG~I~IWdl~ 655 (1491)
|.++.|+|...+++ +...|+.+.||...
T Consensus 376 V~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 376 VSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99999999987665 67889999999985
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-20 Score=225.80 Aligned_cols=295 Identities=16% Similarity=0.205 Sum_probs=204.2
Q ss_pred eeec-cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEE
Q 000454 321 SVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1491)
Q Consensus 321 ~~L~-gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sla 399 (1491)
+.+. .|.+.|+++.|++||+ +||+||.||.|+||.+...... ............. ......+.-+.
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGK---yLAsaGeD~virVWkVie~e~~-~~~~~~~~~~~~~---------~~~~s~~~p~~ 326 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGK---YLASAGEDGVIRVWKVIESERM-RVAEGDSSCMYFE---------YNANSQIEPST 326 (712)
T ss_pred eccccccCCcEEEEEeCCCCc---eeeecCCCceEEEEEEeccchh-cccccccchhhhh---------hhhccccCccc
Confidence 4455 7999999999999998 9999999999999998763321 1100000000000 00000000000
Q ss_pred ECC---CCC--EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccc
Q 000454 400 FNA---NGT--VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1491)
Q Consensus 400 fSP---DG~--~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1491)
.++ .++ ..-.+.....+ +..... ..-..+++..+.||.+.|..|.|+.+
T Consensus 327 s~~~~~~~~~s~~~~~~~s~~~-~~p~~~-----f~f~ekP~~ef~GHt~DILDlSWSKn-------------------- 380 (712)
T KOG0283|consen 327 SSEEKISSRTSSSRKGSQSPCV-LLPLKA-----FVFSEKPFCEFKGHTADILDLSWSKN-------------------- 380 (712)
T ss_pred cccccccccccccccccCCccc-cCCCcc-----ccccccchhhhhccchhheecccccC--------------------
Confidence 000 000 11111111111 111110 00114577889999999999999986
Q ss_pred cccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC-CCC
Q 000454 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNR 553 (1491)
Q Consensus 475 ~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-DG~ 553 (1491)
++|++++.|.+|++|++... ....+..|..-|+||+|+| |.+
T Consensus 381 -------~fLLSSSMDKTVRLWh~~~~------------------------------~CL~~F~HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 381 -------NFLLSSSMDKTVRLWHPGRK------------------------------ECLKVFSHNDFVTCVAFNPVDDR 423 (712)
T ss_pred -------CeeEeccccccEEeecCCCc------------------------------ceeeEEecCCeeEEEEecccCCC
Confidence 48999999999999998853 2345677999999999999 788
Q ss_pred EEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeC--------C
Q 000454 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS--------R 625 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h--------~ 625 (1491)
|+++|+-||.|+||++...+.+.-...+ .-|++++|.| ++.+++.|+.+|.+++|+....+....+..+ +
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehhhh-hhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 9999999999999999877766655444 7899999999 5788889999999999999887777665432 2
Q ss_pred cceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCccccccc--------ceeeecCCCcceEEccCCCEEEccccccCccc
Q 000454 626 FRLVDGKFSPDG-ASIILSDDVGQLYILNTGQGESQKDAK--------YDQFFLGDYRPLVQDTYGNVLDQETQLAPHRR 696 (1491)
Q Consensus 626 ~~VtslafSPDG-~~LAsgs~DG~I~IWdl~tG~~~~~~~--------~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw 696 (1491)
..|+.+.|.|.. ..|++++.|..|+|+|..+-.++.... ....|..|+.+++....+..+ |+|
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V--------YiW 573 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV--------YIW 573 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceE--------EEE
Confidence 279999998744 368888999999999996665543332 345788899999988777755 689
Q ss_pred cCCCc
Q 000454 697 NLQDP 701 (1491)
Q Consensus 697 ~l~~~ 701 (1491)
.+..+
T Consensus 574 ~~~~~ 578 (712)
T KOG0283|consen 574 KNDSF 578 (712)
T ss_pred eCCCC
Confidence 86443
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-19 Score=197.01 Aligned_cols=295 Identities=20% Similarity=0.308 Sum_probs=211.4
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCeEEEEEecCCCCeEEEEEcC--CCCEEEEEECCCeEEEEE
Q 000454 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME----TAYCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVWR 313 (1491)
Q Consensus 240 ~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~----Tg~~l~tL~gH~~~VtsLafSP--DG~lLASGS~DGtIrVWD 313 (1491)
.+|.+-|.|+.|++.|+++|||+.|++|+|||.. +..+....+.|.+.|..|.|.+ -|+.+|+++.|++|.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4799999999999999999999999999999964 3467778889999999999976 689999999999999997
Q ss_pred CCC---------CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCC
Q 000454 314 LPD---------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1491)
Q Consensus 314 l~t---------gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~ 384 (1491)
-.. .....++......|+.|.|.|.-.+ ..|++++.||+|+||+.-..-.+....+......+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG-LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~------- 161 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG-LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV------- 161 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcc-eEEEEeccCcEEEEEecCCccccccchhhhhhhhc-------
Confidence 421 1234456667789999999998644 38999999999999987544333322211111100
Q ss_pred CCCCCCCCcceEEEEECCC---CCEEEEecCC-----ceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcc
Q 000454 385 SSSAGPQSHQIFCCAFNAN---GTVFVTGSSD-----TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPD---G~~LasGs~D-----G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~ 456 (1491)
......+.....|+.|+|. ..+||+|+.+ +.+.||..... ......+..+.+|..+|+.|+|.|+..
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~-----~rKw~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN-----GRKWLKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC-----cceeeeehhcCCCCCcceeeeeccccC
Confidence 1122335566789999974 4578888866 47888887542 223566778889999999999999741
Q ss_pred ccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceec
Q 000454 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1491)
Q Consensus 457 as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 536 (1491)
. ....|++++.|| |+||.+.......... . . ..+..........+..+
T Consensus 237 r----------------------~y~~lAvA~kDg-v~I~~v~~~~s~i~~e------e--~-~~~~~~~~l~v~~vs~~ 284 (361)
T KOG2445|consen 237 R----------------------SYHLLAVATKDG-VRIFKVKVARSAIEEE------E--V-LAPDLMTDLPVEKVSEL 284 (361)
T ss_pred C----------------------ceeeEEEeecCc-EEEEEEeeccchhhhh------c--c-cCCCCccccceEEeeec
Confidence 1 125799999999 9999988532110000 0 0 00000111122334456
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC---CceEEEEe
Q 000454 537 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD---GSLVHSLT 579 (1491)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t---gkll~tL~ 579 (1491)
..|...|..+.|.-.|..|++.+.||.|++|-..- .++...+.
T Consensus 285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~ 330 (361)
T KOG2445|consen 285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLK 330 (361)
T ss_pred cCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEe
Confidence 78999999999999999999999999999997632 34554444
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-19 Score=217.92 Aligned_cols=284 Identities=17% Similarity=0.244 Sum_probs=224.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCC
Q 000454 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1491)
Q Consensus 283 gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg-k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~t 361 (1491)
+|...-+.|+|.|+|.+|++++.||.|++|+.... ..-.++..+...|.+++.... +|++++.+++|.+|.+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-----~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-----HFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-----ceEEeeccceEEEeeCCC
Confidence 68999999999999999999999999999987655 333344437788888887654 799999999999999887
Q ss_pred CCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecC
Q 000454 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1491)
Q Consensus 362 g~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g 441 (1491)
+..-..+ ....-++.+++|+.+|.++|.|+.|-.|++.++.. ......+.+
T Consensus 86 ~~~~~iL--------------------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D---------~s~~~~lrg 136 (933)
T KOG1274|consen 86 GEEDTIL--------------------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD---------SSQEKVLRG 136 (933)
T ss_pred CCcccee--------------------eeeeccceEEEEecCCcEEEeecCceeEEEEeccc---------cchheeecc
Confidence 7643222 12355689999999999999999999999999865 345678899
Q ss_pred CCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCC
Q 000454 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1491)
Q Consensus 442 H~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~ 521 (1491)
|.++|.+|.|.|.+ ..||+.+.||.|++|++.++............
T Consensus 137 h~apVl~l~~~p~~--------------------------~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~-------- 182 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKG--------------------------NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD-------- 182 (933)
T ss_pred cCCceeeeeEcCCC--------------------------CEEEEEecCceEEEEEcccchhhhhcccCCcc--------
Confidence 99999999999986 68999999999999999975432111100000
Q ss_pred CCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeC--CCCCeEEEEEecCCCcEEE
Q 000454 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG--HTESTYVLDVHPFNPRIAM 599 (1491)
Q Consensus 522 ~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~g--Hs~~VtsLafSPdd~~lLa 599 (1491)
. -......++.++|+|+|..+++.+.|+.|++|+..++.....|.. +...+.++.|+| .+.|||
T Consensus 183 --------n-----~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiA 248 (933)
T KOG1274|consen 183 --------N-----EFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIA 248 (933)
T ss_pred --------c-----cccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEe
Confidence 0 001134577899999998899999999999999999998887753 445589999999 789999
Q ss_pred EEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 000454 600 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYIL 652 (1491)
Q Consensus 600 SgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IW 652 (1491)
+++.||.|.|||+.+-.. ......|.+++|-|++.-|-.....|...+|
T Consensus 249 As~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 249 ASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred eeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 999999999999987222 2234589999999999887776666655444
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-17 Score=192.41 Aligned_cols=343 Identities=27% Similarity=0.472 Sum_probs=261.7
Q ss_pred cccccce-eEEEEccCCC-CEEEEEE-cCCCC-EEEEEeC-CCeEEEEECCC-CeEEEEEecCCCCeEEEEEcCCCCEEE
Q 000454 228 TMVQKMQ-NIKRVRGHRN-AVYCAIF-DRSGR-YVITGSD-DRLVKIWSMET-AYCLASCRGHEGDITDLAVSSNNALVA 301 (1491)
Q Consensus 228 ~~v~t~k-~v~tL~GH~~-~Vt~VaF-SpDG~-~LATGS~-DGtIrIWDl~T-g~~l~tL~gH~~~VtsLafSPDG~lLA 301 (1491)
|...... .+..+.++.. .+..+.+ ++++. +++..+. |+.+.+|+... ......+..|...|.+++|+|++.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 171 (466)
T COG2319 92 WDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLA 171 (466)
T ss_pred EEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEE
Confidence 4433333 6777777554 7888888 88888 5555455 99999999998 888899999999999999999999999
Q ss_pred EEEC-CCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCC
Q 000454 302 SASN-DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 302 SGS~-DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
+++. |+.+++|++..+..+..+.+|...|.+++|+|++. ..+++++.|+.|++||...+......
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~d~~i~~wd~~~~~~~~~~------------ 237 (466)
T COG2319 172 SGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG--LLIASGSSDGTIRLWDLSTGKLLRST------------ 237 (466)
T ss_pred ecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc--eEEEEecCCCcEEEEECCCCcEEeee------------
Confidence 9886 99999999999899999999999999999998875 24555599999999987755444311
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccc
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
...+...+ ...|++++.++++++.++.+++|++..... .+..+.+|...|.++.|.|.+
T Consensus 238 -------~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~----- 296 (466)
T COG2319 238 -------LSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--------LLRTLSGHSSSVLSVAFSPDG----- 296 (466)
T ss_pred -------cCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--------EEEEEecCCccEEEEEECCCC-----
Confidence 12234443 338999998999999999999999975321 233336788999999999853
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 540 (1491)
..+++++.|+.+.+|+.......... ....|.
T Consensus 297 ---------------------~~~~~~~~d~~~~~~~~~~~~~~~~~---------------------------~~~~~~ 328 (466)
T COG2319 297 ---------------------KLLASGSSDGTVRLWDLETGKLLSSL---------------------------TLKGHE 328 (466)
T ss_pred ---------------------CEEEEeeCCCcEEEEEcCCCceEEEe---------------------------eecccC
Confidence 46777888999999987753311000 012444
Q ss_pred CCeeEEEEcCCCCEEEEE-eccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEE-EeCCCcEEEEeCCCCceE
Q 000454 541 RGVNMIVWSLDNRFVLAA-IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS-AGYDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 541 ~~VtsVafSPDG~~LaSG-s~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaS-gS~DGtIrIWDl~tGk~l 618 (1491)
..+..+.|.+++..++.+ ..|+.+.+|++.............. +..+.+.+ . ..++. +..++.+.+|+.......
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
T COG2319 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLL 405 (466)
T ss_pred CceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECC-C-CCEEEEecCCCceEEEecccCeee
Confidence 568888884343566665 6788999999988873333333322 88999998 7 55554 789999999999988887
Q ss_pred EEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000454 619 RIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 619 ~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~t 656 (1491)
..+......+..+.+++++..++.++.++.+.+|+..+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 406 RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 77764437888999999999999999999999999876
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-19 Score=206.53 Aligned_cols=283 Identities=11% Similarity=0.165 Sum_probs=229.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeEEEEEecCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCCc
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSME--TAYCLASCRGHEGDITDLAVSSNNA-LVASASNDCIIRVWRLPDGLP 319 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~--Tg~~l~tL~gH~~~VtsLafSPDG~-lLASGS~DGtIrVWDl~tgk~ 319 (1491)
.+.|+||.|+|....|++|+.||+++||.+. +...++.+.--..+|.+++|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999999999999999999999999885 3345666666788999999999999 899999999999999998764
Q ss_pred e--eeeccCC-CceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceE
Q 000454 320 I--SVLRGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1491)
Q Consensus 320 i--~~L~gHs-~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~ 396 (1491)
. ..+.++. ..+.....+++++ +|+..+..|.|.+....+++.+..+.+ .+.|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~---fia~~G~~G~I~lLhakT~eli~s~Ki---------------------eG~v~ 348 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSN---FIAIAGNNGHIHLLHAKTKELITSFKI---------------------EGVVS 348 (514)
T ss_pred ccccCCCCcccchhheeEecCCCC---eEEEcccCceEEeehhhhhhhhheeee---------------------ccEEe
Confidence 3 3334444 4577788999998 999999999999999999998887753 56789
Q ss_pred EEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccc
Q 000454 397 CCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 476 (1491)
Q Consensus 397 slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~ 476 (1491)
.++|+.+|+.|++.+.+|.|.+||++.. .++..+ -
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~---------~~~~rf------------~------------------------ 383 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQN---------SCLHRF------------V------------------------ 383 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCc---------ceEEEE------------e------------------------
Confidence 9999999999999999999999999641 111111 0
Q ss_pred cccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEE
Q 000454 477 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 556 (1491)
Q Consensus 477 ~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~La 556 (1491)
.+|.| .-+++|.|++|.|||
T Consensus 384 ------------D~G~v------------------------------------------------~gts~~~S~ng~ylA 403 (514)
T KOG2055|consen 384 ------------DDGSV------------------------------------------------HGTSLCISLNGSYLA 403 (514)
T ss_pred ------------ecCcc------------------------------------------------ceeeeeecCCCceEE
Confidence 11111 125688899999999
Q ss_pred EEeccceEEEEECCC------CceEEEEeCCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEeCCCCceEEEEeeCC---
Q 000454 557 AAIMDCRICVWNAAD------GSLVHSLTGHTESTYVLDVHPFNPRIAMSAG--YDGKTIVWDIWEGIPIRIYEISR--- 625 (1491)
Q Consensus 557 SGs~DG~IrIWDl~t------gkll~tL~gHs~~VtsLafSPdd~~lLaSgS--~DGtIrIWDl~tGk~l~~l~~h~--- 625 (1491)
+|+..|.|-|||..+ .+++..+..-...|+.|.|+| +..+||.|+ .+..+++-.+.+......|....
T Consensus 404 ~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~-d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~v 482 (514)
T KOG2055|consen 404 TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH-DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKV 482 (514)
T ss_pred eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc-chhhhhhhhhccccceEEEeccceeeeccCCCCCCcc
Confidence 999999999999643 567777777777899999999 667776665 57789999988877777776443
Q ss_pred cceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 626 FRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 626 ~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
+.|+|++|||.|.+||+|...|.|.+|.+.
T Consensus 483 g~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 483 GHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cceEEEEecCCCceEEeecCCCceeeEeec
Confidence 368999999999999999999999999873
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-19 Score=206.41 Aligned_cols=306 Identities=20% Similarity=0.261 Sum_probs=235.4
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCC----CceeeeccCCCceEEEEecCCCCceE
Q 000454 270 WSMETAYCLASCRGHEGDITDLAVSSNN--ALVASASNDCIIRVWRLPDG----LPISVLRGHTAAVTAIAFSPRPGSVY 343 (1491)
Q Consensus 270 WDl~Tg~~l~tL~gH~~~VtsLafSPDG--~lLASGS~DGtIrVWDl~tg----k~i~~L~gHs~~VtsLaFSPdg~s~~ 343 (1491)
.++.+-.....++-+...|++++|+|.. +++|+|+.-|+|-+||+.+. .-+..+..|.++|.+|.|+|.+. .
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~--s 248 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT--S 248 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh--h
Confidence 4455555666777889999999999954 58999999999999999532 33566788999999999999875 3
Q ss_pred EEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCC
Q 000454 344 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1491)
Q Consensus 344 ~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t 423 (1491)
.+++.+.||+|++-|+..+.....+.. ......+..+.|+.+...+++|..=|...+||+++
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~ 310 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSL------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT 310 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhc------------------CccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence 899999999999999987754333321 11344567888888888888888888999999987
Q ss_pred CCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCC
Q 000454 424 PNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 503 (1491)
Q Consensus 424 ~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~ 503 (1491)
. ......+.-|...|..|++.|.. +.+|+|++.|++++|||++....
T Consensus 311 ~--------~s~~~~~~lh~kKI~sv~~NP~~-------------------------p~~laT~s~D~T~kIWD~R~l~~ 357 (498)
T KOG4328|consen 311 D--------GSEYENLRLHKKKITSVALNPVC-------------------------PWFLATASLDQTAKIWDLRQLRG 357 (498)
T ss_pred C--------CccchhhhhhhcccceeecCCCC-------------------------chheeecccCcceeeeehhhhcC
Confidence 4 33456677888899999999974 45899999999999999986321
Q ss_pred CccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECC----CCceEEEEe
Q 000454 504 HPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAA----DGSLVHSLT 579 (1491)
Q Consensus 504 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~----tgkll~tL~ 579 (1491)
. ..+......|...|.++.|||.|..|++.+.|..|+|||.. .-.+..++.
T Consensus 358 K-------------------------~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 358 K-------------------------ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred C-------------------------CCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 1 01345667899999999999999999999999999999983 333333332
Q ss_pred CCCC------CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCc-ceEEE-EEcCCCCEEEE-EeCCCcEE
Q 000454 580 GHTE------STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF-RLVDG-KFSPDGASIIL-SDDVGQLY 650 (1491)
Q Consensus 580 gHs~------~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~-~Vtsl-afSPDG~~LAs-gs~DG~I~ 650 (1491)
|.. .....+|.| +..+++.|-.-..|-|+|-..++.+..+..... .|.++ .|+|-+..+++ ++..|.|+
T Consensus 413 -Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 413 -HNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred -ccCcccccccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEE
Confidence 221 234568999 778888999999999999988887877654333 45544 89999885554 56789999
Q ss_pred EEECC
Q 000454 651 ILNTG 655 (1491)
Q Consensus 651 IWdl~ 655 (1491)
||--.
T Consensus 491 vft~k 495 (498)
T KOG4328|consen 491 VFTNK 495 (498)
T ss_pred EEecC
Confidence 99754
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-20 Score=211.37 Aligned_cols=283 Identities=16% Similarity=0.293 Sum_probs=229.6
Q ss_pred eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCeE
Q 000454 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCR--GHEGDITDLAVSSNNALVASASNDCII 309 (1491)
Q Consensus 235 ~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg---~~l~tL~--gH~~~VtsLafSPDG~lLASGS~DGtI 309 (1491)
.+.+| .|..-|.++++|...+++.||+. |.|+|||+... ..+..|. .....|.++.+.|||+.|++|+.-.+|
T Consensus 412 q~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 412 QINTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred hhhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccccee
Confidence 33444 48899999999999999999986 67999999632 2233332 346789999999999999999999999
Q ss_pred EEEECCCCCce--eeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCC
Q 000454 310 RVWRLPDGLPI--SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1491)
Q Consensus 310 rVWDl~tgk~i--~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s 387 (1491)
.|||+....+. ..+....-..++++.+||.+ +.+++..||.|.|||+.+...+..+
T Consensus 490 siWDLAapTprikaeltssapaCyALa~spDak---vcFsccsdGnI~vwDLhnq~~Vrqf------------------- 547 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAK---VCFSCCSDGNIAVWDLHNQTLVRQF------------------- 547 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCCccc---eeeeeccCCcEEEEEcccceeeecc-------------------
Confidence 99999866443 33444445688999999998 8999999999999999987766655
Q ss_pred CCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecC--CCCCceEEEEccCccccccccccC
Q 000454 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG--HENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 388 ~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g--H~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
.+|...+.||.+++||..|.+|+-|.+||-||++.+. .+.. ....|.++..+|.+
T Consensus 548 -qGhtDGascIdis~dGtklWTGGlDntvRcWDlregr------------qlqqhdF~SQIfSLg~cP~~---------- 604 (705)
T KOG0639|consen 548 -QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR------------QLQQHDFSSQIFSLGYCPTG---------- 604 (705)
T ss_pred -cCCCCCceeEEecCCCceeecCCCccceeehhhhhhh------------hhhhhhhhhhheecccCCCc----------
Confidence 5689999999999999999999999999999998632 2222 34578888888875
Q ss_pred CCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1491)
+++++|=..+.+-|..... .....+..|...|.+
T Consensus 605 ----------------dWlavGMens~vevlh~sk------------------------------p~kyqlhlheScVLS 638 (705)
T KOG0639|consen 605 ----------------DWLAVGMENSNVEVLHTSK------------------------------PEKYQLHLHESCVLS 638 (705)
T ss_pred ----------------cceeeecccCcEEEEecCC------------------------------ccceeecccccEEEE
Confidence 7899998888887765543 223345567888999
Q ss_pred EEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 546 VafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
+.|++.|+++++.+.|..+-.|...-|..+...+ ....|.++.++- +.++++||+.|....||.+
T Consensus 639 lKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 639 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeecc-CceEEEecCCCcceEEEEE
Confidence 9999999999999999999999998888887765 456788999987 7789999999988888875
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-21 Score=228.48 Aligned_cols=257 Identities=19% Similarity=0.324 Sum_probs=219.9
Q ss_pred CCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCc
Q 000454 297 NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1491)
Q Consensus 297 G~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~ 376 (1491)
..+++.+...-.++||+.+ .+..|...|.++..-..+. .+++|+.|..+-+|.+.....+..
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r---~~~~Gg~~~k~~L~~i~kp~~i~S--------- 65 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSR---SLVTGGEDEKVNLWAIGKPNAITS--------- 65 (825)
T ss_pred ccccceeeeeeccccccch------hhhhhhhhhceeeeeccce---eeccCCCceeeccccccCCchhhe---------
Confidence 3345555556677888854 3445888888888755554 889999999999998865443332
Q ss_pred ccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcc
Q 000454 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1491)
Q Consensus 377 ~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~ 456 (1491)
+.+|...|.|+.|++...+|++|+.+|+|++||+.. .+.++.+.+|...+..|.|+|-+
T Consensus 66 -----------~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee---------Ak~vrtLtgh~~~~~sv~f~P~~- 124 (825)
T KOG0267|consen 66 -----------LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE---------AKIVRTLTGHLLNITSVDFHPYG- 124 (825)
T ss_pred -----------eeccCCcceeeecCcchhhhcccccCCceeeeehhh---------hhhhhhhhccccCcceeeeccce-
Confidence 356899999999999999999999999999999975 55678999999999999999986
Q ss_pred ccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceec
Q 000454 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1491)
Q Consensus 457 as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 536 (1491)
.++++|+.|+.+.+||++. .++...+
T Consensus 125 -------------------------~~~a~gStdtd~~iwD~Rk-----------------------------~Gc~~~~ 150 (825)
T KOG0267|consen 125 -------------------------EFFASGSTDTDLKIWDIRK-----------------------------KGCSHTY 150 (825)
T ss_pred -------------------------EEeccccccccceehhhhc-----------------------------cCceeee
Confidence 4779999999999999984 2455666
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc
Q 000454 537 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616 (1491)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk 616 (1491)
.+|...|..+.|+|+|++++.|+.|..++|||+..|+.+..|.+|.+.|..+.|+| ...++++||.|++|++||+++.+
T Consensus 151 ~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 151 KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred cCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeeccceeE
Confidence 77888999999999999999999999999999999999999999999999999999 77899999999999999999999
Q ss_pred eEEEEeeCCcceEEEEEcCCCCEEEEEeCCC
Q 000454 617 PIRIYEISRFRLVDGKFSPDGASIILSDDVG 647 (1491)
Q Consensus 617 ~l~~l~~h~~~VtslafSPDG~~LAsgs~DG 647 (1491)
.+........+|.+++|+|+|+.+++|....
T Consensus 230 ~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 230 VISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred EeeccCCccCCceeeeecCCceeeecCchhh
Confidence 8888887788999999999999999887643
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=213.22 Aligned_cols=273 Identities=12% Similarity=0.203 Sum_probs=213.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCc
Q 000454 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 319 (1491)
Q Consensus 241 GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg-~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~ 319 (1491)
+|+..-+.|+|.|+|.+|.|++.||.|++|+...- ..-.++.-+...|.+++.. +++|++|+.+++|.+|.+..+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCc
Confidence 68999999999999999999999999999998665 3334444477788888765 55999999999999999999987
Q ss_pred eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEE
Q 000454 320 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1491)
Q Consensus 320 i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sla 399 (1491)
-..+...+-++.+++|+-+|. +++.|+.|-.|++.++.+......+ .+|..+|.++.
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~---~iaagsdD~~vK~~~~~D~s~~~~l--------------------rgh~apVl~l~ 145 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGK---MIAAGSDDTAVKLLNLDDSSQEKVL--------------------RGHDAPVLQLS 145 (933)
T ss_pred cceeeeeeccceEEEEecCCc---EEEeecCceeEEEEeccccchheee--------------------cccCCceeeee
Confidence 777777788999999999998 9999999999999998877655544 56899999999
Q ss_pred ECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCC-CCCceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 400 FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 400 fSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH-~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
|+|.+.+||+.+.||.|+||++.++......... ....... ...+..++|+|++
T Consensus 146 ~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v--~k~n~~~~s~i~~~~aW~Pk~----------------------- 200 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV--DKDNEFILSRICTRLAWHPKG----------------------- 200 (933)
T ss_pred EcCCCCEEEEEecCceEEEEEcccchhhhhcccC--CccccccccceeeeeeecCCC-----------------------
Confidence 9999999999999999999999765432111110 0011111 4456778999985
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG 558 (1491)
..|+..+.|+.|++|+..+.. ..+.+. ...+...+..++|+|+|+|||++
T Consensus 201 ---g~la~~~~d~~Vkvy~r~~we---------~~f~Lr------------------~~~~ss~~~~~~wsPnG~YiAAs 250 (933)
T KOG1274|consen 201 ---GTLAVPPVDNTVKVYSRKGWE---------LQFKLR------------------DKLSSSKFSDLQWSPNGKYIAAS 250 (933)
T ss_pred ---CeEEeeccCCeEEEEccCCce---------eheeec------------------ccccccceEEEEEcCCCcEEeee
Confidence 478889999999999887532 222211 12233448999999999999999
Q ss_pred eccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcE
Q 000454 559 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 597 (1491)
Q Consensus 559 s~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~l 597 (1491)
+.+|.|.|||.++-.. ......|++++|.|+.+.+
T Consensus 251 ~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 251 TLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred ccCCcEEEEecccchh----ccccceeEEEecCCCCCee
Confidence 9999999999987221 2234579999999965543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-20 Score=224.73 Aligned_cols=238 Identities=23% Similarity=0.409 Sum_probs=208.7
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 000454 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD 316 (1491)
Q Consensus 237 ~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~t 316 (1491)
+.+-.|...|.|+..-..++.+++|+.|..+-+|.+..-..+..|.+|..+|.+|.|++...+|++|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 35567999999999988899999999999999999988888888999999999999999999999999999999999999
Q ss_pred CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceE
Q 000454 317 GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1491)
Q Consensus 317 gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~ 396 (1491)
++.+++|.+|...+..+.|+|-+. ++++++.|+.+++||++...|...+ .+|...|.
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~---~~a~gStdtd~~iwD~Rk~Gc~~~~--------------------~s~~~vv~ 158 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGE---FFASGSTDTDLKIWDIRKKGCSHTY--------------------KSHTRVVD 158 (825)
T ss_pred hhhhhhhhccccCcceeeeccceE---EeccccccccceehhhhccCceeee--------------------cCCcceeE
Confidence 999999999999999999999987 8899999999999999876666554 34788899
Q ss_pred EEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccc
Q 000454 397 CCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 476 (1491)
Q Consensus 397 slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~ 476 (1491)
++.|+|+|++++.|+.|..++|||+.. ++.+..+..|.+.|.++.|+|.-
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~a---------gk~~~ef~~~e~~v~sle~hp~e--------------------- 208 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTA---------GKLSKEFKSHEGKVQSLEFHPLE--------------------- 208 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccc---------cccccccccccccccccccCchh---------------------
Confidence 999999999999999999999999965 55677889999999999999863
Q ss_pred cccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEE
Q 000454 477 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 556 (1491)
Q Consensus 477 ~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~La 556 (1491)
-.+++|+.|+++++||+++-.. +....+...+|.+.+|+|+|..++
T Consensus 209 -----~Lla~Gs~d~tv~f~dletfe~-----------------------------I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 209 -----VLLAPGSSDRTVRFWDLETFEV-----------------------------ISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred -----hhhccCCCCceeeeeccceeEE-----------------------------eeccCCccCCceeeeecCCceeee
Confidence 3688999999999999986321 111223356799999999999999
Q ss_pred EEecc
Q 000454 557 AAIMD 561 (1491)
Q Consensus 557 SGs~D 561 (1491)
+|...
T Consensus 255 ~G~q~ 259 (825)
T KOG0267|consen 255 SGEQI 259 (825)
T ss_pred cCchh
Confidence 88755
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=191.82 Aligned_cols=285 Identities=16% Similarity=0.220 Sum_probs=215.8
Q ss_pred cccccccccccccCccccccCCCcceeeeccccCCCcccccc-eeE-EEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 000454 192 ADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKM-QNI-KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI 269 (1491)
Q Consensus 192 ~d~V~~l~~r~~Gg~~~~~~~~~sl~s~~~~~a~~~~~v~t~-k~v-~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrI 269 (1491)
.|.|..|+|++... ..+.+..++..+..|.++.- ..+ +....|.++|.|++|+.||..+++|+.|+.+++
T Consensus 27 ~DsIS~l~FSP~~~--------~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 27 EDSISALAFSPQAD--------NLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred ccchheeEeccccC--------ceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 47788888876221 22334456666666666542 211 456679999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEE
Q 000454 270 WSMETAYCLASCRGHEGDITDLAVSSNNA--LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347 (1491)
Q Consensus 270 WDl~Tg~~l~tL~gH~~~VtsLafSPDG~--lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaS 347 (1491)
||+.++ .+..+..|.++|.++.|-+... .|+||+.|.+|+.||++...++.++. -...|+++..-.. .+++
T Consensus 99 wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~p-----m~vV 171 (347)
T KOG0647|consen 99 WDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLYP-----MAVV 171 (347)
T ss_pred EEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccCc-----eeEE
Confidence 999999 5556677999999999988665 89999999999999999999988887 5677888876554 7888
Q ss_pred EeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCC
Q 000454 348 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTD 427 (1491)
Q Consensus 348 gS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~ 427 (1491)
+..+..|.+|+++.+...... ...+....+.|++..+|....|.|+-.|.+.|..+..+..
T Consensus 172 ata~r~i~vynL~n~~te~k~------------------~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~- 232 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPPTEFKR------------------IESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP- 232 (347)
T ss_pred EecCCcEEEEEcCCCcchhhh------------------hcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-
Confidence 999999999999766432221 1233567799999999998899999999999998864211
Q ss_pred CCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccc
Q 000454 428 DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKA 507 (1491)
Q Consensus 428 ~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~ 507 (1491)
..-..++.|...- +.++ .|
T Consensus 233 ------~~nFtFkCHR~~~-----------------------------------------~~~~--~V------------ 251 (347)
T KOG0647|consen 233 ------KDNFTFKCHRSTN-----------------------------------------SVND--DV------------ 251 (347)
T ss_pred ------cCceeEEEeccCC-----------------------------------------CCCC--ce------------
Confidence 1111222222100 0000 11
Q ss_pred cccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEE
Q 000454 508 ARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYV 587 (1491)
Q Consensus 508 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~Vts 587 (1491)
..|++|+|+|.-..|++++.||++.+||-.....+.+...|..+|++
T Consensus 252 ---------------------------------YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItc 298 (347)
T KOG0647|consen 252 ---------------------------------YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITC 298 (347)
T ss_pred ---------------------------------EEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccce
Confidence 25788999999999999999999999999888888888899999999
Q ss_pred EEEecCCCcEEEEEeCC
Q 000454 588 LDVHPFNPRIAMSAGYD 604 (1491)
Q Consensus 588 LafSPdd~~lLaSgS~D 604 (1491)
..|+.+|..++.+.|+|
T Consensus 299 c~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 299 CSFNRNGSIFAYALGYD 315 (347)
T ss_pred eEecCCCCEEEEEeecc
Confidence 99999666666666666
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-19 Score=218.94 Aligned_cols=273 Identities=18% Similarity=0.266 Sum_probs=196.7
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000454 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 276 ~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVr 355 (1491)
+.++.+.||...|.|++|...|.++++|+.|..|+||.++++.+++.+.||.+.|+.++.+..+. ++++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~---~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNT---MIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhh---hhhhcccCceEE
Confidence 34456679999999999999999999999999999999999999999999999999999998876 899999999999
Q ss_pred EEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCce
Q 000454 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435 (1491)
Q Consensus 356 IWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~ 435 (1491)
+|.+.++..+..+ .+|.+.|++++|+|-. +.+.||++++||.+-........|
T Consensus 258 vWrl~~~~pvsvL--------------------rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp--- 310 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVL--------------------RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRP--- 310 (1113)
T ss_pred EEecCCCchHHHH--------------------hccccceeeeccCccc----cCCCCCceEeccccccccccCCCC---
Confidence 9999998877666 4699999999999964 678899999999861100000000
Q ss_pred eeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccc
Q 000454 436 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515 (1491)
Q Consensus 436 i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~ 515 (1491)
.. + .....+.++.|...+ ..++|++.|+....|.+.
T Consensus 311 ~~-~-~~~~~~~s~~~~~~~--------------------------~~f~Tgs~d~ea~n~e~~---------------- 346 (1113)
T KOG0644|consen 311 LK-F-TEKDLVDSILFENNG--------------------------DRFLTGSRDGEARNHEFE---------------- 346 (1113)
T ss_pred CC-c-ccccceeeeeccccc--------------------------cccccccCCcccccchhh----------------
Confidence 00 0 011223333333322 355666666655555322
Q ss_pred cCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCC
Q 000454 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP 595 (1491)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~ 595 (1491)
+++|...+-.+++.+. +-.
T Consensus 347 -----------------------------~l~~~~~~lif~t~ss--------------------------------d~~ 365 (1113)
T KOG0644|consen 347 -----------------------------QLAWRSNLLIFVTRSS--------------------------------DLS 365 (1113)
T ss_pred -----------------------------HhhhhccceEEEeccc--------------------------------ccc
Confidence 1223222222222222 112
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEE-EEeCCCcEEEEECCCCcccccc------cceee
Q 000454 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASII-LSDDVGQLYILNTGQGESQKDA------KYDQF 668 (1491)
Q Consensus 596 ~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LA-sgs~DG~I~IWdl~tG~~~~~~------~~~~~ 668 (1491)
.+.+++-.+..+++|++.+|.+++.+.+|...+..+.|+|-...++ +++.||...|||+..|..++.. ..+..
T Consensus 366 ~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~k 445 (1113)
T KOG0644|consen 366 SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGK 445 (1113)
T ss_pred ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccc
Confidence 3455666677899999999999999999999999999999887776 6899999999999888664422 23446
Q ss_pred ecCCCcceEE-ccCCC
Q 000454 669 FLGDYRPLVQ-DTYGN 683 (1491)
Q Consensus 669 fs~D~r~La~-d~~G~ 683 (1491)
|++||..++. +.+|.
T Consensus 446 FSqdgts~~lsd~hgq 461 (1113)
T KOG0644|consen 446 FSQDGTSIALSDDHGQ 461 (1113)
T ss_pred cCCCCceEecCCCCCc
Confidence 7777766543 34444
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=197.77 Aligned_cols=309 Identities=18% Similarity=0.243 Sum_probs=227.6
Q ss_pred cccceeEEEEccCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEECCCC----eEEEEEecCCCCeEEEEEcCCC-CEEEE
Q 000454 230 VQKMQNIKRVRGHRNAVYCAIFDRSG--RYVITGSDDRLVKIWSMETA----YCLASCRGHEGDITDLAVSSNN-ALVAS 302 (1491)
Q Consensus 230 v~t~k~v~tL~GH~~~Vt~VaFSpDG--~~LATGS~DGtIrIWDl~Tg----~~l~tL~gH~~~VtsLafSPDG-~lLAS 302 (1491)
...+......+-|.+.|+|++|+|.. ++||+|..-|+|-+||+.+. .-+..+..|.++|.+|.|+|.+ ..+++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 34456667788899999999999965 58899999999999999522 3355677899999999999954 58889
Q ss_pred EECCCeEEEEECCCCCceeeec--cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCC
Q 000454 303 ASNDCIIRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 303 GS~DGtIrVWDl~tgk~i~~L~--gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
.+.||+|++-|++.+..-..+. .-...+..+.|+.+.. .++.+..=|.+.+||++++......
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~---~vl~~~~~G~f~~iD~R~~~s~~~~------------ 317 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR---SVLFGDNVGNFNVIDLRTDGSEYEN------------ 317 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCc---cEEEeecccceEEEEeecCCccchh------------
Confidence 9999999999998775433333 3556778888988876 6777777789999999977542111
Q ss_pred CCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccc
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~ 459 (1491)
...|...|..++++|-. .+||+++.|++++|||++......+ ++.....|...|.+..|+|.+
T Consensus 318 -------~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyFSPs~---- 381 (498)
T KOG4328|consen 318 -------LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYFSPSG---- 381 (498)
T ss_pred -------hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEEcCCC----
Confidence 13366789999999954 6789999999999999986432111 245567899999999999986
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1491)
..|+|.+.|..|+|||..- ...|.. +. ..+..-..+
T Consensus 382 ----------------------gtl~TT~~D~~IRv~dss~------~sa~~~-------p~---------~~I~Hn~~t 417 (498)
T KOG4328|consen 382 ----------------------GTLLTTCQDNEIRVFDSSC------ISAKDE-------PL---------GTIPHNNRT 417 (498)
T ss_pred ----------------------CceEeeccCCceEEeeccc------ccccCC-------cc---------ceeeccCcc
Confidence 3599999999999998741 000100 00 000000111
Q ss_pred CC--CeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCC-CeEE-EEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 540 PR--GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTE-STYV-LDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 540 ~~--~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~-~Vts-LafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
.. .....+|.|+..+|++|-.-..|-|+|...++.+..+..... .|.+ ..|||.+..+++-++..|.|+||--.
T Consensus 418 ~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 418 GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 11 134468999999999999999999999999998888765543 4544 58999655577666678888888653
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-19 Score=212.24 Aligned_cols=287 Identities=11% Similarity=0.203 Sum_probs=215.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----CceeeeccC---CCceEEEEecCCCCceEEEEEEeCCCcEEEEc
Q 000454 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDG----LPISVLRGH---TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358 (1491)
Q Consensus 286 ~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg----k~i~~L~gH---s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWD 358 (1491)
..+.+|...++-..|+.++.. .+.||.+... .+...+... ...+..|.|..... ++|++++..|.|.+||
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~--NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYS--NLIATCSTNGVISVWD 116 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchh--hhheeecCCCcEEEEe
Confidence 445667777887777777654 6778776532 122222211 12355677875433 4899999999999999
Q ss_pred cCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCCCCCCCCCCCCCceee
Q 000454 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437 (1491)
Q Consensus 359 l~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~ 437 (1491)
+...--...+ ..+..|...+.++.|++. ..+|++|+.||+|++||++. .....
T Consensus 117 lnk~~rnk~l-----------------~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~---------~~S~~ 170 (839)
T KOG0269|consen 117 LNKSIRNKLL-----------------TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS---------KKSKS 170 (839)
T ss_pred cCccccchhh-----------------hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec---------ccccc
Confidence 9752111111 112458889999999984 57899999999999999986 33455
Q ss_pred eecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccC
Q 000454 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1491)
Q Consensus 438 ~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~ 517 (1491)
.+.+....|..|+|+|.. +..|+++...|.+++||++...
T Consensus 171 t~~~nSESiRDV~fsp~~-------------------------~~~F~s~~dsG~lqlWDlRqp~--------------- 210 (839)
T KOG0269|consen 171 TFRSNSESIRDVKFSPGY-------------------------GNKFASIHDSGYLQLWDLRQPD--------------- 210 (839)
T ss_pred cccccchhhhceeeccCC-------------------------CceEEEecCCceEEEeeccCch---------------
Confidence 667788899999999864 5789999999999999999532
Q ss_pred CCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCC-CCCeEEEEEecCCCc
Q 000454 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-TESTYVLDVHPFNPR 596 (1491)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH-s~~VtsLafSPdd~~ 596 (1491)
.....+..|.+.|.|+.|+|++.+||+|+.|+.|+|||+.+++.-....-+ ..+|.+|.|-|....
T Consensus 211 -------------r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 211 -------------RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred -------------hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 345567889999999999999999999999999999999876543333222 457999999998888
Q ss_pred EEEEEe--CCCcEEEEeCCCC-ceEEEEeeCCcceEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 000454 597 IAMSAG--YDGKTIVWDIWEG-IPIRIYEISRFRLVDGKFSP-DGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 597 lLaSgS--~DGtIrIWDl~tG-k~l~~l~~h~~~VtslafSP-DG~~LAsgs~DG~I~IWdl 654 (1491)
.|++++ .|-.|+|||+... -+..+|..|...++.++|-. |-..|.+++.||.|..-.+
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 888886 5889999999764 67888998999999999965 4455667777777654443
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=195.78 Aligned_cols=201 Identities=15% Similarity=0.158 Sum_probs=141.8
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC-CCEEEE
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-NRFVLA 557 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD-G~~LaS 557 (1491)
|+..+|++++.||.|++|.+..+... .....+...+..|...|+++.|+|- ...|++
T Consensus 638 FD~~rLAVa~ddg~i~lWr~~a~gl~----------------------e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~ 695 (1012)
T KOG1445|consen 638 FDDERLAVATDDGQINLWRLTANGLP----------------------ENEMTPEKILTIHGEKITSLRFHPLAADVLAV 695 (1012)
T ss_pred CChHHeeecccCceEEEEEeccCCCC----------------------cccCCcceeeecccceEEEEEecchhhhHhhh
Confidence 45679999999999999988753311 1123455667889999999999994 457889
Q ss_pred EeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEeeCC-cceEEEEEcC
Q 000454 558 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI-PIRIYEISR-FRLVDGKFSP 635 (1491)
Q Consensus 558 Gs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk-~l~~l~~h~-~~VtslafSP 635 (1491)
++.|.+|+|||+.+++....|.+|++.|..++|+| +++.+|+.+.||+|+||....++ ++..-.+.. ..--.|.|.-
T Consensus 696 asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac 774 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC 774 (1012)
T ss_pred hhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe
Confidence 99999999999999999999999999999999999 78899999999999999987764 333322211 1234688999
Q ss_pred CCCEEEEEeCC----CcEEEEECCCCcc--cccc-----c--ceeeecCCCcceEEccCCCE---EEccccccCccccCC
Q 000454 636 DGASIILSDDV----GQLYILNTGQGES--QKDA-----K--YDQFFLGDYRPLVQDTYGNV---LDQETQLAPHRRNLQ 699 (1491)
Q Consensus 636 DG~~LAsgs~D----G~I~IWdl~tG~~--~~~~-----~--~~~~fs~D~r~La~d~~G~v---Lde~tq~~p~Lw~l~ 699 (1491)
||++|++.+.| .+|.+|+..+-.. +... + .-.++..|...|.....|.. +.+-+-..|++.++.
T Consensus 775 dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~ 854 (1012)
T KOG1445|consen 775 DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLA 854 (1012)
T ss_pred cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecc
Confidence 99999987654 4788888755331 1111 1 11244455555555555532 122334445555544
Q ss_pred Ccc
Q 000454 700 DPL 702 (1491)
Q Consensus 700 ~~l 702 (1491)
.+.
T Consensus 855 ~f~ 857 (1012)
T KOG1445|consen 855 PFM 857 (1012)
T ss_pred ccc
Confidence 443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=202.47 Aligned_cols=334 Identities=16% Similarity=0.271 Sum_probs=238.7
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000454 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 277 ~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrI 356 (1491)
+...++||++.|.+|...|.|.+||+|+.||+|+||.+.+|.|+.++. ..+.|.||+|+|.+.. ..||++-.. .+.|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~-~vLAvA~~~-~~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDL-CVLAVAVGE-CVLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCc-eeEEEEecC-ceEE
Confidence 445678999999999999999999999999999999999999999887 5678999999999853 345444444 4667
Q ss_pred EccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEe----cCCceEEEEeCCCCCCCCCCCC
Q 000454 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG----SSDTLARVWNACKPNTDDSDQP 432 (1491)
Q Consensus 357 WDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasG----s~DG~IrVWDl~t~~~~~s~~~ 432 (1491)
.+..-|..+... +....|+.+ ..++.+..|.-.... +.
T Consensus 469 vnp~~G~~~e~~---------------------------------~t~ell~~~~~~~~p~~~~~~W~~~~~~-----e~ 510 (733)
T KOG0650|consen 469 VNPIFGDRLEVG---------------------------------PTKELLASAPNESEPDAAVVTWSRASLD-----EL 510 (733)
T ss_pred eCccccchhhhc---------------------------------chhhhhhcCCCccCCcccceeechhhhh-----hh
Confidence 665444211110 000111111 123456677653211 11
Q ss_pred CceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCC---CeEEEEecCCCCCCccccc
Q 000454 433 NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD---GSAIIWIPRSRRSHPKAAR 509 (1491)
Q Consensus 433 ~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~D---GtIrIWDl~s~k~~~~~~~ 509 (1491)
..-+.....|...|..|.|+..| ++|++...+ ..|.|.++...+.
T Consensus 511 ~~~v~~~I~~~k~i~~vtWHrkG--------------------------DYlatV~~~~~~~~VliHQLSK~~s------ 558 (733)
T KOG0650|consen 511 EKGVCIVIKHPKSIRQVTWHRKG--------------------------DYLATVMPDSGNKSVLIHQLSKRKS------ 558 (733)
T ss_pred ccceEEEEecCCccceeeeecCC--------------------------ceEEEeccCCCcceEEEEecccccc------
Confidence 12245556788899999999876 788887654 4577777764321
Q ss_pred cccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEE
Q 000454 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD 589 (1491)
Q Consensus 510 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLa 589 (1491)
..-+....+.|.++.|+|...+|++++. ..|+|||+..+.++..+......|..++
T Consensus 559 -----------------------Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~ms 614 (733)
T KOG0650|consen 559 -----------------------QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMS 614 (733)
T ss_pred -----------------------cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeee
Confidence 0112234456889999999999998865 4899999999888888877778899999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCC-ceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccceee
Q 000454 590 VHPFNPRIAMSAGYDGKTIVWDIWEG-IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQF 668 (1491)
Q Consensus 590 fSPdd~~lLaSgS~DGtIrIWDl~tG-k~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~ 668 (1491)
+|| ++.-|+.++.|+.+..+|+.-+ ++.+++..|...|++++|++--.++++|+.||.+.||--
T Consensus 615 ihp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg-------------- 679 (733)
T KOG0650|consen 615 IHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG-------------- 679 (733)
T ss_pred ecC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee--------------
Confidence 999 4555557999999999999754 688888889999999999999999999999999999863
Q ss_pred ecCCCcceEEccCCCEEEccccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCc
Q 000454 669 FLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQG 748 (1491)
Q Consensus 669 fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~ 748 (1491)
.| ..+..+.|.+.++.- +++..-...++|+.+.|+|.-.+|.++ ..|++
T Consensus 680 --------------~V-Y~Dl~qnpliVPlK~-------------L~gH~~~~~~gVLd~~wHP~qpWLfsA---GAd~t 728 (733)
T KOG0650|consen 680 --------------MV-YNDLLQNPLIVPLKR-------------LRGHEKTNDLGVLDTIWHPRQPWLFSA---GADGT 728 (733)
T ss_pred --------------ee-ehhhhcCCceEeeee-------------ccCceeecccceEeecccCCCceEEec---CCCce
Confidence 11 111112222222211 111111245779999999999999998 89999
Q ss_pred EEecc
Q 000454 749 YQLQP 753 (1491)
Q Consensus 749 v~lw~ 753 (1491)
++||.
T Consensus 729 irlfT 733 (733)
T KOG0650|consen 729 IRLFT 733 (733)
T ss_pred EEeeC
Confidence 99984
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-18 Score=193.62 Aligned_cols=310 Identities=19% Similarity=0.279 Sum_probs=220.8
Q ss_pred CCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC---------eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 000454 243 RNAVYCAIFDRSGR-YVITGSDDRLVKIWSMETA---------YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~-~LATGS~DGtIrIWDl~Tg---------~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVW 312 (1491)
..+|+.+.|.+... +||||+.|..|+||-+..+ +.+..|..|...|++|.|+|+|.+||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999999776 9999999999999988543 2345677899999999999999999999999999999
Q ss_pred ECC--------C--------CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCc
Q 000454 313 RLP--------D--------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1491)
Q Consensus 313 Dl~--------t--------gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~ 376 (1491)
-.. + ......+.+|...|+.++|+|++. ++++++.|..+++||+..|+....+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~---~l~s~s~dns~~l~Dv~~G~l~~~~-------- 161 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN---FLVSGSVDNSVRLWDVHAGQLLAIL-------- 161 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc---eeeeeeccceEEEEEeccceeEeec--------
Confidence 765 2 122456778999999999999997 9999999999999999999876655
Q ss_pred ccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCC-ceEEEEccCc
Q 000454 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND-VNYVQFSGCA 455 (1491)
Q Consensus 377 ~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~-V~sVafSpdg 455 (1491)
..|...+..++|.|-++++++-+.|...+++.+... .....|... +...++.+.
T Consensus 162 ------------~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~------------~~~~~~~~~~m~~~~~~~~- 216 (434)
T KOG1009|consen 162 ------------DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLK------------QVIKRHGLDIMPAKAFNER- 216 (434)
T ss_pred ------------cccccccceeecchhhhhhhhhccCcccceeeeeee------------eeeeeeeeeEeeecccCCC-
Confidence 458899999999999999999998887777766321 111111100 000001100
Q ss_pred cccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcee
Q 000454 456 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535 (1491)
Q Consensus 456 ~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 535 (1491)
.....+++.=.+.
T Consensus 217 ---------------------------------e~~s~rLfhDeTl---------------------------------- 229 (434)
T KOG1009|consen 217 ---------------------------------EGKSTRLFHDETL---------------------------------- 229 (434)
T ss_pred ---------------------------------CcceeeeeecCch----------------------------------
Confidence 0111222221110
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEec---------cceEEEEECCC-CceEEEEeCCCCCeEEEEEecC------------
Q 000454 536 ILPTPRGVNMIVWSLDNRFVLAAIM---------DCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPF------------ 593 (1491)
Q Consensus 536 l~~h~~~VtsVafSPDG~~LaSGs~---------DG~IrIWDl~t-gkll~tL~gHs~~VtsLafSPd------------ 593 (1491)
..-...++|+|||.+|++... -+..++|+-.. .++...+.+...++..+.|+|-
T Consensus 230 ----ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~ 305 (434)
T KOG1009|consen 230 ----KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKF 305 (434)
T ss_pred ----hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccc
Confidence 011344678888888887431 12345555432 3445566666666666666651
Q ss_pred -----CCcEEEEEeCCCcEEEEeCCCCceEEEEe-eCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCccc
Q 000454 594 -----NPRIAMSAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 660 (1491)
Q Consensus 594 -----d~~lLaSgS~DGtIrIWDl~tGk~l~~l~-~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~ 660 (1491)
-+..+|.++ -..|.|||..+-.++.... .|-..|++++|++||.+|++.+.||...+.-+...++-
T Consensus 306 ~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 306 LFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 112333344 5579999999988887664 46668999999999999999999999988888776653
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-16 Score=197.32 Aligned_cols=363 Identities=16% Similarity=0.186 Sum_probs=253.0
Q ss_pred CCcccccceeEEEEccCCCCEEEEEEcCCC---CEEEEEeCCCeEEEEECCCCeEEEEE---------------------
Q 000454 226 PSTMVQKMQNIKRVRGHRNAVYCAIFDRSG---RYVITGSDDRLVKIWSMETAYCLASC--------------------- 281 (1491)
Q Consensus 226 ~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG---~~LATGS~DGtIrIWDl~Tg~~l~tL--------------------- 281 (1491)
......+..+++.|.+|..+++.+.+.|.. .++++++.||+|++||...+.+++++
T Consensus 40 ~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~ 119 (792)
T KOG1963|consen 40 KVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISAN 119 (792)
T ss_pred EEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccce
Confidence 345567889999999999999999999854 47889999999999998654432221
Q ss_pred --------------------------------------------------------------------------------
Q 000454 282 -------------------------------------------------------------------------------- 281 (1491)
Q Consensus 282 -------------------------------------------------------------------------------- 281 (1491)
T Consensus 120 ~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~ 199 (792)
T KOG1963|consen 120 VYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRD 199 (792)
T ss_pred eEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccch
Confidence
Q ss_pred --ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--C--CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000454 282 --RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD--G--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 282 --~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~t--g--k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVr 355 (1491)
..|.-.++|.+++|+++++|+|..||.|.||.--. + .....+.-|...|.+++|+++|. +|++|+..|.+.
T Consensus 200 ~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~---~LlSGG~E~VLv 276 (792)
T KOG1963|consen 200 ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA---YLLSGGREGVLV 276 (792)
T ss_pred hhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc---eEeecccceEEE
Confidence 02445578899999999999999999999996322 1 23456777999999999999998 999999999999
Q ss_pred EEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCce
Q 000454 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435 (1491)
Q Consensus 356 IWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~ 435 (1491)
+|.+.+++ +++ + ..-+..|..+.++||+.+.+....|..|.+..+.+.......+....
T Consensus 277 ~Wq~~T~~--kqf-L------------------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~ 335 (792)
T KOG1963|consen 277 LWQLETGK--KQF-L------------------PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP 335 (792)
T ss_pred EEeecCCC--ccc-c------------------cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC
Confidence 99999887 222 1 12467899999999999999999999999998754322111110000
Q ss_pred e--eeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccc
Q 000454 436 I--DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1491)
Q Consensus 436 i--~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1491)
. ..-....+-.+.+.+.|.. +.++-.+..|.|.+||+.+.....+.......
T Consensus 336 ~~~~~k~~~~~l~t~~~idpr~--------------------------~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n 389 (792)
T KOG1963|consen 336 PTPSTKTRPQSLTTGVSIDPRT--------------------------NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDEN 389 (792)
T ss_pred CCccccccccccceeEEEcCCC--------------------------CceeecCCCceEEEEeccccceeeeEEEEeec
Confidence 0 0011123345556666632 47888899999999999875533221111111
Q ss_pred cccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe--------cc--ceEEEEECCCC----ceEEEE-
Q 000454 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI--------MD--CRICVWNAADG----SLVHSL- 578 (1491)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs--------~D--G~IrIWDl~tg----kll~tL- 578 (1491)
+.. +. ..+...++.++.+..|.+++|+- .| -.+++|-.... .+...+
T Consensus 390 ~~~-------------~~-----~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~ 451 (792)
T KOG1963|consen 390 YSD-------------GD-----VNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKIN 451 (792)
T ss_pred ccC-------------Cc-----ceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEe
Confidence 000 00 02334678888999999999853 22 35788876443 333322
Q ss_pred eCCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEeCCC------C----ceEEEEeeCCcceEEEEEcCCCCEEEEEeCCC
Q 000454 579 TGHTESTYVLDVHPFNPR-IAMSAGYDGKTIVWDIWE------G----IPIRIYEISRFRLVDGKFSPDGASIILSDDVG 647 (1491)
Q Consensus 579 ~gHs~~VtsLafSPdd~~-lLaSgS~DGtIrIWDl~t------G----k~l~~l~~h~~~VtslafSPDG~~LAsgs~DG 647 (1491)
..|...+...++.+.... .+++++.||.++||-+.. . .|...-..|..+++.++||.||..|+++ .++
T Consensus 452 ~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~ 530 (792)
T KOG1963|consen 452 NPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDD 530 (792)
T ss_pred cCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCC
Confidence 467777666666553444 888999999999998832 1 2222222367799999999999766655 458
Q ss_pred cEEEEECCCC
Q 000454 648 QLYILNTGQG 657 (1491)
Q Consensus 648 ~I~IWdl~tG 657 (1491)
.|.|||..+.
T Consensus 531 ~Itiwd~~~~ 540 (792)
T KOG1963|consen 531 TITIWDYDTK 540 (792)
T ss_pred EEEEecCCCh
Confidence 9999999883
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-18 Score=188.36 Aligned_cols=294 Identities=17% Similarity=0.197 Sum_probs=211.4
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccce
Q 000454 288 ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367 (1491)
Q Consensus 288 VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~ 367 (1491)
..|+.|++.|.+||+|+.||.|.|||+.|...-..+.+|..+|++++|+++|. .|++++.|..|.+||+..|.++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr---~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR---KLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCC---EeeeecCCceeEEEeccCCCceeE
Confidence 78999999999999999999999999999998899999999999999999998 999999999999999999999888
Q ss_pred eecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEE-EecCCceEEEEeCCCCCCCCCCCCCceeeeecCC-CCC
Q 000454 368 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV-TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-END 445 (1491)
Q Consensus 368 i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~La-sGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH-~~~ 445 (1491)
+.+ ..+|+.+.|+|.....+ +.-.+..-.+.++..+. ...+... .+.
T Consensus 103 irf---------------------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~----------h~~Lp~d~d~d 151 (405)
T KOG1273|consen 103 IRF---------------------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK----------HSVLPKDDDGD 151 (405)
T ss_pred EEc---------------------cCccceeeeccccCCeEEEEEecCCcEEEEecCCc----------eeeccCCCccc
Confidence 864 55688999998543222 22222223333332110 0000000 000
Q ss_pred ----ceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCC
Q 000454 446 ----VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1491)
Q Consensus 446 ----V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~ 521 (1491)
-.+..|.+. ++++++|...|.+.++|..+.+...
T Consensus 152 ln~sas~~~fdr~--------------------------g~yIitGtsKGkllv~~a~t~e~va---------------- 189 (405)
T KOG1273|consen 152 LNSSASHGVFDRR--------------------------GKYIITGTSKGKLLVYDAETLECVA---------------- 189 (405)
T ss_pred cccccccccccCC--------------------------CCEEEEecCcceEEEEecchheeee----------------
Confidence 001122222 4799999999999999988743211
Q ss_pred CCCCCCCCCCCceeccCC-CCCeeEEEEcCCCCEEEEEeccceEEEEECCC-------Cc--eEEEEeC--CCCCeEEEE
Q 000454 522 PMPPQPPRGGPRQRILPT-PRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD-------GS--LVHSLTG--HTESTYVLD 589 (1491)
Q Consensus 522 ~~~~~~~~~~~~~~l~~h-~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t-------gk--ll~tL~g--Hs~~VtsLa 589 (1491)
.+... ...|..+.++..|++|++-+.|..|+.|++.. ++ +.+.+.. ..-.=.+++
T Consensus 190 -------------s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 190 -------------SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred -------------eeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 11111 35688899999999999999999999999863 11 1111110 011224678
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCc-ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccceee
Q 000454 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF-RLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQF 668 (1491)
Q Consensus 590 fSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~-~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~ 668 (1491)
|+.++..++++...-..++||.-..|.+++.+.+..+ ...++.|.|-...|++- ..|.|+||.... .+.-.+
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~------~enwsa 329 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ------VENWSA 329 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec------ccchhh
Confidence 8885545554445567899999999999999998874 67799999999888877 679999998743 334457
Q ss_pred ecCCCcceE
Q 000454 669 FLGDYRPLV 677 (1491)
Q Consensus 669 fs~D~r~La 677 (1491)
|+||++.|.
T Consensus 330 fAPdFqele 338 (405)
T KOG1273|consen 330 FAPDFQELE 338 (405)
T ss_pred cCchHHHHH
Confidence 888888763
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=184.57 Aligned_cols=272 Identities=15% Similarity=0.200 Sum_probs=204.4
Q ss_pred ccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-
Q 000454 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA- 402 (1491)
Q Consensus 324 ~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP- 402 (1491)
.+|..-|+++.|.+.|+ ++++|+.|++|+|||.+...-.... ......|.+.|..+.|.+
T Consensus 10 s~h~DlihdVs~D~~GR---RmAtCSsDq~vkI~d~~~~s~~W~~----------------Ts~Wrah~~Si~rV~WAhP 70 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGR---RMATCSSDQTVKIWDSTSDSGTWSC----------------TSSWRAHDGSIWRVVWAHP 70 (361)
T ss_pred cCCcceeeeeeecccCc---eeeeccCCCcEEEEeccCCCCceEE----------------eeeEEecCCcEEEEEecCc
Confidence 46889999999999998 9999999999999997654322222 233456889999999966
Q ss_pred -CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCC
Q 000454 403 -NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1491)
Q Consensus 403 -DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~ 481 (1491)
-|+.+|+++.|+++.||.-.................+......|+.|.|.|... +
T Consensus 71 EfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl------------------------G 126 (361)
T KOG2445|consen 71 EFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL------------------------G 126 (361)
T ss_pred cccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhc------------------------c
Confidence 489999999999999998643332233334566777888889999999998642 2
Q ss_pred CeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC---CCEEEEE
Q 000454 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD---NRFVLAA 558 (1491)
Q Consensus 482 ~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD---G~~LaSG 558 (1491)
=.+++++.||.++||+.-.. .....|.-...+..-.. ....+.....|+.|+|. ..+||+|
T Consensus 127 LklA~~~aDG~lRIYEA~dp---~nLs~W~Lq~Ei~~~~~-------------pp~~~~~~~~CvsWn~sr~~~p~iAvg 190 (361)
T KOG2445|consen 127 LKLAAASADGILRIYEAPDP---MNLSQWTLQHEIQNVID-------------PPGKNKQPCFCVSWNPSRMHEPLIAVG 190 (361)
T ss_pred eEEEEeccCcEEEEEecCCc---cccccchhhhhhhhccC-------------CcccccCcceEEeeccccccCceEEEE
Confidence 37999999999999986642 23344544433321111 01123445678899874 3578888
Q ss_pred ecc-----ceEEEEECCCC----ceEEEEeCCCCCeEEEEEecCCC---cEEEEEeCCCcEEEEeCCCC-----------
Q 000454 559 IMD-----CRICVWNAADG----SLVHSLTGHTESTYVLDVHPFNP---RIAMSAGYDGKTIVWDIWEG----------- 615 (1491)
Q Consensus 559 s~D-----G~IrIWDl~tg----kll~tL~gHs~~VtsLafSPdd~---~lLaSgS~DGtIrIWDl~tG----------- 615 (1491)
+.+ +.++||....+ ..+.+|.+|..+|+.|+|.|.-+ .+||+++.|| |+||.+...
T Consensus 191 s~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~ 269 (361)
T KOG2445|consen 191 SDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLA 269 (361)
T ss_pred cccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccC
Confidence 766 47888876543 34557889999999999999655 5899999999 999998621
Q ss_pred ---------ceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 616 ---------IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 616 ---------k~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
+.+..+..|.+.|+.+.|.-.|..|++++.||.|++|...
T Consensus 270 ~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 270 PDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred CCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 2345567889999999999999999999999999999863
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-18 Score=192.07 Aligned_cols=267 Identities=16% Similarity=0.285 Sum_probs=196.3
Q ss_pred eccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC
Q 000454 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA 402 (1491)
Q Consensus 323 L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP 402 (1491)
...|.+.|..+...+-++. .+.++-+..|.|.||++...- ..+ ..+..........+.....+|...=+.++|||
T Consensus 147 ~i~h~g~~NRvr~~~~~~~-~~~aswse~G~V~Vw~l~~~l--~~l--~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp 221 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNE-VLCASWSENGRVQVWDLAPHL--NAL--SEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP 221 (440)
T ss_pred ccccccccceeeecccCCc-ceeeeecccCcEEEEEchhhh--hhh--cCccccccccccCceEEecccCccceeeeccc
Confidence 3457778888877776643 277788889999999986321 111 11111111233444556677888889999999
Q ss_pred CC-CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCC
Q 000454 403 NG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1491)
Q Consensus 403 DG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~ 481 (1491)
-. ..|++|..-+.|++|...++.-. .-...+.+|+..|..++|+|.- .
T Consensus 222 ~~~g~LlsGDc~~~I~lw~~~~g~W~------vd~~Pf~gH~~SVEDLqWSptE-------------------------~ 270 (440)
T KOG0302|consen 222 IKTGRLLSGDCVKGIHLWEPSTGSWK------VDQRPFTGHTKSVEDLQWSPTE-------------------------D 270 (440)
T ss_pred ccccccccCccccceEeeeeccCcee------ecCccccccccchhhhccCCcc-------------------------C
Confidence 32 34788888899999998764321 1223467799999999999974 4
Q ss_pred CeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc
Q 000454 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561 (1491)
Q Consensus 482 ~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D 561 (1491)
..|++||.||+|+|||++.+.. .+......|...|+.|.|+.+-.+||+|+.|
T Consensus 271 ~vfaScS~DgsIrIWDiRs~~~---------------------------~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd 323 (440)
T KOG0302|consen 271 GVFASCSCDGSIRIWDIRSGPK---------------------------KAAVSTKAHNSDVNVISWNRREPLLASGGDD 323 (440)
T ss_pred ceEEeeecCceEEEEEecCCCc---------------------------cceeEeeccCCceeeEEccCCcceeeecCCC
Confidence 6899999999999999997431 1223336788899999999999999999999
Q ss_pred ceEEEEECCC---CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc----------------eEEEEe
Q 000454 562 CRICVWNAAD---GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI----------------PIRIYE 622 (1491)
Q Consensus 562 G~IrIWDl~t---gkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk----------------~l~~l~ 622 (1491)
|+++|||++. ++++..|+-|..+|++|.|+|.....|+++|.|.+|.|||+.-.. +-+.+.
T Consensus 324 Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLF 403 (440)
T KOG0302|consen 324 GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLF 403 (440)
T ss_pred ceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEE
Confidence 9999999975 678999999999999999999888999999999999999985211 112233
Q ss_pred eC--CcceEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 000454 623 IS--RFRLVDGKFSPDGA-SIILSDDVGQLYILN 653 (1491)
Q Consensus 623 ~h--~~~VtslafSPDG~-~LAsgs~DG~I~IWd 653 (1491)
.| ...|..+.|++.-. +|++++.|| +.||.
T Consensus 404 VHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 404 VHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred EecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 33 34678899999754 566666666 45554
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-17 Score=189.00 Aligned_cols=287 Identities=15% Similarity=0.139 Sum_probs=215.1
Q ss_pred CCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
+..+.|+++.|+|...+|++++.|+.++||.+.. .....+..+.-..-+|.+..|.|+|
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDG-------k~N~~lqS~~l~~fPi~~a~f~p~G-------------- 269 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDG-------KVNPKLQSIHLEKFPIQKAEFAPNG-------------- 269 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecC-------ccChhheeeeeccCccceeeecCCC--------------
Confidence 3567799999999999999999999999999863 2234555555567789999999987
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC-CCCeeEEEE
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT-PRGVNMIVW 548 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h-~~~VtsVaf 548 (1491)
+..+++++....++.||+.+.+... +....++ ...+..+..
T Consensus 270 -----------~~~i~~s~rrky~ysyDle~ak~~k---------------------------~~~~~g~e~~~~e~FeV 311 (514)
T KOG2055|consen 270 -----------HSVIFTSGRRKYLYSYDLETAKVTK---------------------------LKPPYGVEEKSMERFEV 311 (514)
T ss_pred -----------ceEEEecccceEEEEeecccccccc---------------------------ccCCCCcccchhheeEe
Confidence 3589999999999999998755211 1111122 234677889
Q ss_pred cCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCc-c
Q 000454 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF-R 627 (1491)
Q Consensus 549 SPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~-~ 627 (1491)
|+++++|+..+..|.|.|....+++++.+++ -.+.|..++|+. +++.|++++.+|.|.+||+....+++.+....+ .
T Consensus 312 Shd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~ 389 (514)
T KOG2055|consen 312 SHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVH 389 (514)
T ss_pred cCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccc
Confidence 9999999999999999999999999999887 467799999998 556666777899999999999999999873322 3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------c------cccccceeeecCCCcceEEccCCCEEEccccccCcc
Q 000454 628 LVDGKFSPDGASIILSDDVGQLYILNTGQGE------S------QKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHR 695 (1491)
Q Consensus 628 VtslafSPDG~~LAsgs~DG~I~IWdl~tG~------~------~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~L 695 (1491)
-+.+|.|++|.|||+|+..|.|.|||..+.- + +...+..+.|.+|...|+..+...- . +..|
T Consensus 390 gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~k---n---alrL 463 (514)
T KOG2055|consen 390 GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKK---N---ALRL 463 (514)
T ss_pred eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccc---c---ceEE
Confidence 4578889999999999999999999965432 1 2234567789999988876554431 0 1123
Q ss_pred ccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccC
Q 000454 696 RNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPL 754 (1491)
Q Consensus 696 w~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~ 754 (1491)
..+|...+- +..|.+. . .-..+..++|||.|-+||+| ...+++.||-+
T Consensus 464 VHvPS~TVF-sNfP~~n--~-----~vg~vtc~aFSP~sG~lAvG---Ne~grv~l~kL 511 (514)
T KOG2055|consen 464 VHVPSCTVF-SNFPTSN--T-----KVGHVTCMAFSPNSGYLAVG---NEAGRVHLFKL 511 (514)
T ss_pred Eeccceeee-ccCCCCC--C-----cccceEEEEecCCCceEEee---cCCCceeeEee
Confidence 334443332 2222221 1 12247789999999999999 88889999976
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-18 Score=216.80 Aligned_cols=287 Identities=21% Similarity=0.354 Sum_probs=222.3
Q ss_pred EEEEEcCCCC-EEEEE----------eCCCeEEEEECC--CCe----EEEEEecCCCCeEEEEEcCCCCE----EEEEEC
Q 000454 247 YCAIFDRSGR-YVITG----------SDDRLVKIWSME--TAY----CLASCRGHEGDITDLAVSSNNAL----VASASN 305 (1491)
Q Consensus 247 t~VaFSpDG~-~LATG----------S~DGtIrIWDl~--Tg~----~l~tL~gH~~~VtsLafSPDG~l----LASGS~ 305 (1491)
-.++|+|++. ++|+| +.+.++-||.+. +.. .+..+. -......++|.+.|.. ||.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 3578888886 55655 334566666553 222 333333 3456789999987764 899999
Q ss_pred CCeEEEEECCC---C---CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccC
Q 000454 306 DCIIRVWRLPD---G---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 379 (1491)
Q Consensus 306 DGtIrVWDl~t---g---k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g 379 (1491)
||.|.+||... + ..+..+..|++.|..+.|++... ++|++|+.||.|.|||+...+..... +
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~--nlLASGa~~geI~iWDlnn~~tP~~~----------~ 156 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQG--NLLASGADDGEILIWDLNKPETPFTP----------G 156 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCC--ceeeccCCCCcEEEeccCCcCCCCCC----------C
Confidence 99999999765 2 34567778999999999999876 48999999999999999864422221 0
Q ss_pred CCCCCCCCCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCC--CceEEEEccCcc
Q 000454 380 RNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN--DVNYVQFSGCAV 456 (1491)
Q Consensus 380 ~~~~~~~s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~--~V~sVafSpdg~ 456 (1491)
.......|.+++|+.. ...|++++.+|.+.|||++.. +.+..+..+.+ .+..|+|+|+..
T Consensus 157 --------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~---------~pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 157 --------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK---------KPIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred --------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC---------CcccccccCCCccceeeeeeCCCCc
Confidence 1235678999999874 467889999999999999863 34444444443 578999999862
Q ss_pred ccccccccCCCCCCCccccccccCCCeEEEEeCCC---eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000454 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1491)
Q Consensus 457 as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG---tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (1491)
..+++++.|. .|.+||++.. ..+.
T Consensus 220 -------------------------Tql~~As~dd~~PviqlWDlR~a----------------------------ssP~ 246 (1049)
T KOG0307|consen 220 -------------------------TQLLVASGDDSAPVIQLWDLRFA----------------------------SSPL 246 (1049)
T ss_pred -------------------------eeeeeecCCCCCceeEeeccccc----------------------------CCch
Confidence 4677776653 5889998852 2456
Q ss_pred eeccCCCCCeeEEEEcCCC-CEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 534 QRILPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG-~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
+.+.+|..+|.++.|++.+ ++|++++.|+.|.+|+..+|+.+..+......++.+.|+|-++.+++.++.||.|.|+.+
T Consensus 247 k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 247 KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeee
Confidence 6678899999999999977 889999999999999999999999999888999999999988889999999999999999
Q ss_pred CCCc
Q 000454 613 WEGI 616 (1491)
Q Consensus 613 ~tGk 616 (1491)
..+.
T Consensus 327 ~~~~ 330 (1049)
T KOG0307|consen 327 QGTD 330 (1049)
T ss_pred ecCC
Confidence 6543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-18 Score=183.19 Aligned_cols=312 Identities=17% Similarity=0.237 Sum_probs=218.0
Q ss_pred eeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 000454 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 234 k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~-gH~~~VtsLafSPDG~lLASGS~DGtIrVW 312 (1491)
.++..|++|.+.|+|+.|..+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+.--|+ ..|.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 45678889999999999999876 8999999999999999999998888 57889999999887 467788899999999
Q ss_pred ECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCC-cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCC
Q 000454 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG-TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1491)
Q Consensus 313 Dl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DG-tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h 391 (1491)
++.-+..+. .|.-.+.++.|++.. +...+... .+.+++-+.............. ..........+.
T Consensus 83 ~ia~s~~i~---i~Si~~nslgFCrfS-----l~~~~k~~eqll~yp~rgsde~h~~D~g~~t-----qv~i~dd~~~~K 149 (323)
T KOG0322|consen 83 TIAYSAFIS---IHSIVVNSLGFCRFS-----LVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-----QVQIADDSERSK 149 (323)
T ss_pred EccCcceEE---Eeeeeccccccccce-----eccCCCcchhheecCCcccchhhhhccCccc-----eeEccCchhccc
Confidence 997655433 355667777777642 22222221 1222222111110000000000 000011122345
Q ss_pred CcceEEEEECC-CC--CEEEEecCCceEEEEeCCCCCCC-CCCCCCceeeeecCCCCCceEEEEccCccccccccccCCC
Q 000454 392 SHQIFCCAFNA-NG--TVFVTGSSDTLARVWNACKPNTD-DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1491)
Q Consensus 392 ~~~V~slafSP-DG--~~LasGs~DG~IrVWDl~t~~~~-~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1491)
.+.++|..+.. ++ -++++|..+|.|.+||+.++... ...+..+.......|..+|.++.+.+..
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~------------ 217 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC------------ 217 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh------------
Confidence 56677777544 23 35778999999999999875221 1222334555667899999999998642
Q ss_pred CCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000454 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1491)
Q Consensus 468 ~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1491)
+.=++|+.+..+..|.+...... ........-...+|..+.
T Consensus 218 --------------~rGisgga~dkl~~~Sl~~s~gs-------------------------lq~~~e~~lknpGv~gvr 258 (323)
T KOG0322|consen 218 --------------DRGISGGADDKLVMYSLNHSTGS-------------------------LQIRKEITLKNPGVSGVR 258 (323)
T ss_pred --------------cCCcCCCccccceeeeeccccCc-------------------------ccccceEEecCCCccceE
Confidence 34566777778888877642100 001111222345688899
Q ss_pred EcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
+-||++.+|+++.|+.|+||..++..++..|+-|.+.|++++|+| +..++|+++.|++|.+|++
T Consensus 259 IRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 259 IRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred EccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999999999 6678889999999999987
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-17 Score=180.92 Aligned_cols=312 Identities=17% Similarity=0.260 Sum_probs=220.3
Q ss_pred EEccCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCC---eEEEEEe--cCCCCeEEEEEcCC----CCEEEEE
Q 000454 238 RVRGHRNAVYCAIFDR-----SGRYVITGSDDRLVKIWSMETA---YCLASCR--GHEGDITDLAVSSN----NALVASA 303 (1491)
Q Consensus 238 tL~GH~~~Vt~VaFSp-----DG~~LATGS~DGtIrIWDl~Tg---~~l~tL~--gH~~~VtsLafSPD----G~lLASG 303 (1491)
...+|..+|+.++|.+ .-..+||++. ..|.||..... +.++++. .|......++|+-+ +.+||+|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457889999999985 2346666655 56888887533 3444443 37778888999864 3489999
Q ss_pred ECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCC
Q 000454 304 SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1491)
Q Consensus 304 S~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~ 383 (1491)
+.-|.|+|.|+.++++...+.+|...|..|.|+|+.. ++|++++.|..|++|++++..++..+-
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~--qlvls~SkD~svRlwnI~~~~Cv~VfG-------------- 175 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP--QLVLSASKDHSVRLWNIQTDVCVAVFG-------------- 175 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCC--cEEEEecCCceEEEEeccCCeEEEEec--------------
Confidence 9999999999999999999999999999999999965 589999999999999999999887762
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCC------CCC-------------ceeeeecCCCC
Q 000454 384 PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD------QPN-------------HEIDVLSGHEN 444 (1491)
Q Consensus 384 ~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~------~~~-------------~~i~~l~gH~~ 444 (1491)
...+|...|.++.|+++|.+|++++.|..|.+|++......... .+. .......-|..
T Consensus 176 ---G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn 252 (385)
T KOG1034|consen 176 ---GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN 252 (385)
T ss_pred ---ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccc
Confidence 23569999999999999999999999999999999743211000 000 00001122333
Q ss_pred CceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCC
Q 000454 445 DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMP 524 (1491)
Q Consensus 445 ~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~ 524 (1491)
.|.|+.|- ++++++-|.++.|..|.+..-. ..++ .+.+
T Consensus 253 yVDCvrw~----------------------------gd~ilSkscenaI~~w~pgkl~---------e~~~-~vkp---- 290 (385)
T KOG1034|consen 253 YVDCVRWF----------------------------GDFILSKSCENAIVCWKPGKLE---------ESIH-NVKP---- 290 (385)
T ss_pred hHHHHHHH----------------------------hhheeecccCceEEEEecchhh---------hhhh-ccCC----
Confidence 34443333 3689999999999999763110 0000 0000
Q ss_pred CCCCCCCCceeccCCCCCeeE--EEEcCCCCEEEEEeccceEEEEECCCCceE--EEEeC--CCCCeEEEEEecCCCcEE
Q 000454 525 PQPPRGGPRQRILPTPRGVNM--IVWSLDNRFVLAAIMDCRICVWNAADGSLV--HSLTG--HTESTYVLDVHPFNPRIA 598 (1491)
Q Consensus 525 ~~~~~~~~~~~l~~h~~~Vts--VafSPDG~~LaSGs~DG~IrIWDl~tgkll--~tL~g--Hs~~VtsLafSPdd~~lL 598 (1491)
.........++.-....|.- .+|.|-+++||.|...|.|++||+....+. .++.. -...|...+|+. ++.+|
T Consensus 291 -~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-dgs~l 368 (385)
T KOG1034|consen 291 -PESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-DGSIL 368 (385)
T ss_pred -CccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-cCcEE
Confidence 00011112222233334444 466777899999999999999999876653 23322 234688999998 77888
Q ss_pred EEEeCCCcEEEEeCC
Q 000454 599 MSAGYDGKTIVWDIW 613 (1491)
Q Consensus 599 aSgS~DGtIrIWDl~ 613 (1491)
+....|++|.-||..
T Consensus 369 v~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 369 VLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEeCCCcEEEEEee
Confidence 889999999999863
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-17 Score=194.30 Aligned_cols=264 Identities=21% Similarity=0.357 Sum_probs=189.1
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCC-CEEEEEECCCeEEEE
Q 000454 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS--CRGHEGDITDLAVSSNN-ALVASASNDCIIRVW 312 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~t--L~gH~~~VtsLafSPDG-~lLASGS~DGtIrVW 312 (1491)
++....|.++|..++|-|-...|++++.|.+|++||+.+++++.. +.||.+.|.++||.|.+ ..+++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 456678999999999999667899999999999999999998877 88999999999999965 488999999999999
Q ss_pred ECCCCC--------------------c-------eeeeccCCCceEE---EEecCCCCceEEEEEEeC-CCcEEEEccCC
Q 000454 313 RLPDGL--------------------P-------ISVLRGHTAAVTA---IAFSPRPGSVYQLLSSSD-DGTCRIWDARY 361 (1491)
Q Consensus 313 Dl~tgk--------------------~-------i~~L~gHs~~Vts---LaFSPdg~s~~~LaSgS~-DGtVrIWDl~t 361 (1491)
|+.-.. + +.....+...|.+ +.+..|.. .||+++. |+.|+|||++.
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~---tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES---TLASAGAADSTIKVWDLRK 249 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc---eeeeccCCCcceEEEeecc
Confidence 984211 1 1112234444444 44445554 7888887 99999999997
Q ss_pred CCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecC
Q 000454 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1491)
Q Consensus 362 g~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g 441 (1491)
........- . +... ..........+.++.....|.+|++.+.|+.|++|++..... .++..+.+
T Consensus 250 ~~~~~r~ep-~------~~~~--~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~-------sP~~~~sg 313 (720)
T KOG0321|consen 250 NYTAYRQEP-R------GSDK--YPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI-------SPVAEFSG 313 (720)
T ss_pred cccccccCC-C------cccC--ccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc-------CchhhccC
Confidence 765443210 0 0000 001112345678888888899999988999999999976332 23333333
Q ss_pred CCCCceEE--EEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCC
Q 000454 442 HENDVNYV--QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 519 (1491)
Q Consensus 442 H~~~V~sV--afSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~ 519 (1491)
+...-..+ ..+|+ +.++++|+.|..+.+|.+.+..
T Consensus 314 ~~~~sf~vks~lSpd--------------------------~~~l~SgSsd~~ayiw~vs~~e----------------- 350 (720)
T KOG0321|consen 314 KLNSSFYVKSELSPD--------------------------DCSLLSGSSDEQAYIWVVSSPE----------------- 350 (720)
T ss_pred cccceeeeeeecCCC--------------------------CceEeccCCCcceeeeeecCcc-----------------
Confidence 33221111 12333 3689999999999999888633
Q ss_pred CCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC-CEEEEEeccceEEEEECCCC
Q 000454 520 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAADG 572 (1491)
Q Consensus 520 ~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG-~~LaSGs~DG~IrIWDl~tg 572 (1491)
.+...+.+|...|++++|.|.. .-+++++.|..++||++..+
T Consensus 351 -----------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 351 -----------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred -----------CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 2344567889999999998853 34777799999999999654
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=190.49 Aligned_cols=248 Identities=20% Similarity=0.313 Sum_probs=189.5
Q ss_pred EEEEEcC-------CCCEEEEEeCCCeEEEEECCCC---eEEEE------------------EecCCCCeEEEEEcCC-C
Q 000454 247 YCAIFDR-------SGRYVITGSDDRLVKIWSMETA---YCLAS------------------CRGHEGDITDLAVSSN-N 297 (1491)
Q Consensus 247 t~VaFSp-------DG~~LATGS~DGtIrIWDl~Tg---~~l~t------------------L~gH~~~VtsLafSPD-G 297 (1491)
.|++|.. .|+|+|.|..|..|.|||+.-. .+..+ ..+|+..|.+|+|+.+ .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666643 3789999999999999998521 11111 2369999999999875 4
Q ss_pred CEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcc
Q 000454 298 ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1491)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~ 377 (1491)
+.||+||.|.+|++||+.+|++..++..|.+.|.++.|+|... .+|++|+.|++|.+.|.+.........
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p--~~LLsGs~D~~V~l~D~R~~~~s~~~w-------- 326 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEP--SVLLSGSYDGTVALKDCRDPSNSGKEW-------- 326 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCc--eEEEeccccceEEeeeccCccccCceE--------
Confidence 5899999999999999999999999999999999999999865 489999999999999998533222211
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcc
Q 000454 378 AGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1491)
Q Consensus 378 ~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~ 456 (1491)
...+.|-.++|.|.. ..+++++.||+|+-+|++.. .+++..+.+|.+.|.+|++++..
T Consensus 327 ------------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~--------~~~vwt~~AHd~~ISgl~~n~~~- 385 (463)
T KOG0270|consen 327 ------------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP--------GKPVWTLKAHDDEISGLSVNIQT- 385 (463)
T ss_pred ------------EeccceEEEEecCCCceeEEEecCCceEEeeecCCC--------CCceeEEEeccCCcceEEecCCC-
Confidence 135678999999965 56788889999999999863 47888999999999999998754
Q ss_pred ccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceec
Q 000454 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1491)
Q Consensus 457 as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 536 (1491)
+..+++++.|+.+++|++....... ...-
T Consensus 386 ------------------------p~~l~t~s~d~~Vklw~~~~~~~~~---------------------------v~~~ 414 (463)
T KOG0270|consen 386 ------------------------PGLLSTASTDKVVKLWKFDVDSPKS---------------------------VKEH 414 (463)
T ss_pred ------------------------CcceeeccccceEEEEeecCCCCcc---------------------------cccc
Confidence 4689999999999999987532100 0000
Q ss_pred cCCCCCeeEEEEcCCCCE-EEEEeccceEEEEECCCCceEE
Q 000454 537 LPTPRGVNMIVWSLDNRF-VLAAIMDCRICVWNAADGSLVH 576 (1491)
Q Consensus 537 ~~h~~~VtsVafSPDG~~-LaSGs~DG~IrIWDl~tgkll~ 576 (1491)
.-.-+...|+++.|+-.+ ++.|+..+.++|||+.+...+.
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 000112566777777654 6667788889999998765543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=185.25 Aligned_cols=215 Identities=19% Similarity=0.303 Sum_probs=176.5
Q ss_pred EEEccCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEECCC----------------CeEEEEEecCCCCeEEEEEcCCC-
Q 000454 237 KRVRGHRNAVYCAIFDRSG--RYVITGSDDRLVKIWSMET----------------AYCLASCRGHEGDITDLAVSSNN- 297 (1491)
Q Consensus 237 ~tL~GH~~~Vt~VaFSpDG--~~LATGS~DGtIrIWDl~T----------------g~~l~tL~gH~~~VtsLafSPDG- 297 (1491)
...-+|.+.|..+..++-| .+.|+-+..|.|.||++.. .+.+.++.+|...=+.|+|||--
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 3445688888888888865 4556667899999999842 35678889999999999999932
Q ss_pred CEEEEEECCCeEEEEECCCCCc---eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCC
Q 000454 298 ALVASASNDCIIRVWRLPDGLP---ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1491)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tgk~---i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~ 374 (1491)
..|++|..-+.|++|...+|.- ...|.+|+..|-.++|+|... ..|++|+.||+|+|||++.+.....+..
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~--~vfaScS~DgsIrIWDiRs~~~~~~~~~---- 298 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED--GVFASCSCDGSIRIWDIRSGPKKAAVST---- 298 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC--ceEEeeecCceEEEEEecCCCccceeEe----
Confidence 2588888889999999888742 234667999999999999876 3899999999999999998854444422
Q ss_pred CcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 375 ~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
..|...|+.|.|+..-.+||+|+.||+++|||++.- +...++..+..|..+|++|.|+|.
T Consensus 299 --------------kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~------~~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 299 --------------KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF------KSGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred --------------eccCCceeeEEccCCcceeeecCCCceEEEEEhhhc------cCCCcceeEEeccCCeeEEEeccc
Confidence 457889999999998889999999999999999863 335778899999999999999986
Q ss_pred ccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCC
Q 000454 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1491)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k 502 (1491)
- ...|++++.|.+|.|||+....
T Consensus 359 e-------------------------~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 359 E-------------------------DSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred c-------------------------CceEEeccCCCcEEEEEeeccC
Confidence 4 3579999999999999998543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-17 Score=183.47 Aligned_cols=305 Identities=15% Similarity=0.229 Sum_probs=218.3
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC------CeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCe
Q 000454 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET------AYCLASCR-GHEGDITDLAVSSNNALVASASNDCI 308 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T------g~~l~tL~-gH~~~VtsLafSPDG~lLASGS~DGt 308 (1491)
.+.+.+|.+.|.+|.|+.++++||+|++|..++||++.. .+++.... .|...|.|++|...+++|.+|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 356889999999999999999999999999999999853 34444433 36689999999999999999999999
Q ss_pred EEEEECCCCCceeeecc--CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 309 IRVWRLPDGLPISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 309 IrVWDl~tgk~i~~L~g--Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
|.+.|+++.+.+.++.. ..+.|+.+..+|..+ .|++.+.+|.|.+||++.........++
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN---~~~~~t~~~~V~~~D~Rd~~~~~~~~~~--------------- 190 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN---TLIVVTRAKLVSFIDNRDRQNPISLVLP--------------- 190 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCc---eEEEEecCceEEEEeccCCCCCCceeee---------------
Confidence 99999999988877752 235999999999976 8999999999999999876533222221
Q ss_pred CCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccC
Q 000454 387 SAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 387 s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
.........+.|+|. ..+|++.+..+-+-|||++........ ......+......-.++.|+|.|
T Consensus 191 --AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~--~~~~~~L~~~~~~~M~~~~~~~G---------- 256 (609)
T KOG4227|consen 191 --ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ--RSMFKGLPQENTEWMGSLWSPSG---------- 256 (609)
T ss_pred --cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHh--hhccccCcccchhhhheeeCCCC----------
Confidence 123455778899995 468888888999999999864321000 00111122222234567788876
Q ss_pred CCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1491)
+.|++.-....-.+||+.+.++...... ..+.+ ......+.+
T Consensus 257 ----------------~Q~msiRR~~~P~~~D~~S~R~~V~k~D----------------~N~~G------Y~N~~T~KS 298 (609)
T KOG4227|consen 257 ----------------NQFMSIRRGKCPLYFDFISQRCFVLKSD----------------HNPNG------YCNIKTIKS 298 (609)
T ss_pred ----------------CeehhhhccCCCEEeeeecccceeEecc----------------CCCCc------ceeeeeeee
Confidence 4555555555556667665331110000 00000 011234667
Q ss_pred EEEcCCCCEEEEEeccceEEEEECCC----------C-------------ceEEEEeCCCCCeEEEEEecCCCcEEEEEe
Q 000454 546 IVWSLDNRFVLAAIMDCRICVWNAAD----------G-------------SLVHSLTGHTESTYVLDVHPFNPRIAMSAG 602 (1491)
Q Consensus 546 VafSPDG~~LaSGs~DG~IrIWDl~t----------g-------------kll~tL~gHs~~VtsLafSPdd~~lLaSgS 602 (1491)
++|--| ..+++|+.+-.|++|.+.. | +.+..|+||...++.|.|+| ...+|++.|
T Consensus 299 ~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-H~~~l~SSG 376 (609)
T KOG4227|consen 299 MTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-HNNLLVSSG 376 (609)
T ss_pred eeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC-CcceEeccc
Confidence 788655 4599999999999998742 1 23457899999999999999 678888999
Q ss_pred CCCcEEEEeC
Q 000454 603 YDGKTIVWDI 612 (1491)
Q Consensus 603 ~DGtIrIWDl 612 (1491)
....++||.-
T Consensus 377 VE~~~KlWS~ 386 (609)
T KOG4227|consen 377 VENSFKLWSD 386 (609)
T ss_pred hhhheecccc
Confidence 9999999975
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-17 Score=186.02 Aligned_cols=284 Identities=14% Similarity=0.179 Sum_probs=208.0
Q ss_pred CCeEEEEECCCCeEEEEEecC--CCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCC---c--eeeeccCCCceEEEEe
Q 000454 264 DRLVKIWSMETAYCLASCRGH--EGDITDLAVSSNNAL-VASASNDCIIRVWRLPDGL---P--ISVLRGHTAAVTAIAF 335 (1491)
Q Consensus 264 DGtIrIWDl~Tg~~l~tL~gH--~~~VtsLafSPDG~l-LASGS~DGtIrVWDl~tgk---~--i~~L~gHs~~VtsLaF 335 (1491)
...++|||+........+-.| ...|.++.|+....+ +|+.+.|..|++|.- .|+ . +..+.+. .-.|++.
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~~gd--~~~Cv~~ 87 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEK-DGKTPEVPRVRKLTGD--NAFCVAC 87 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecc-cCCCCccceeeccccc--hHHHHhh
Confidence 346999999876655544433 234899999987642 333455788999974 332 1 1122222 3334444
Q ss_pred cCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCce
Q 000454 336 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415 (1491)
Q Consensus 336 SPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~ 415 (1491)
....- ++++|+..++|+|||++...+...+ ..|...|+++.++-...+||+++..|.
T Consensus 88 ~s~S~---y~~sgG~~~~Vkiwdl~~kl~hr~l--------------------kdh~stvt~v~YN~~DeyiAsvs~gGd 144 (673)
T KOG4378|consen 88 ASQSL---YEISGGQSGCVKIWDLRAKLIHRFL--------------------KDHQSTVTYVDYNNTDEYIASVSDGGD 144 (673)
T ss_pred hhcce---eeeccCcCceeeehhhHHHHHhhhc--------------------cCCcceeEEEEecCCcceeEEeccCCc
Confidence 33333 8999999999999999844433332 458899999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCceeeeecCC-CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEE
Q 000454 416 ARVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1491)
Q Consensus 416 IrVWDl~t~~~~~s~~~~~~i~~l~gH-~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIr 494 (1491)
|.|..+.++. ....+... ...|.-+.|++.. ...|.+++.+|.|.
T Consensus 145 iiih~~~t~~---------~tt~f~~~sgqsvRll~ys~sk-------------------------r~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 145 IIIHGTKTKQ---------KTTTFTIDSGQSVRLLRYSPSK-------------------------RFLLSIASDKGAVT 190 (673)
T ss_pred EEEEecccCc---------cccceecCCCCeEEEeeccccc-------------------------ceeeEeeccCCeEE
Confidence 9999987642 22233322 3345678888753 34788999999999
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC-EEEEEeccceEEEEECCCCc
Q 000454 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAADGS 573 (1491)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSGs~DG~IrIWDl~tgk 573 (1491)
+||+..... ...-...|..+...|||+|... +|++.+.|..|++||+...+
T Consensus 191 lwDv~g~sp----------------------------~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 191 LWDVQGMSP----------------------------IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred EEeccCCCc----------------------------ccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 999986331 1122345778888999999665 57778999999999998877
Q ss_pred eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceEEEEeeCCcceEEEEEcCCC
Q 000454 574 LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDG 637 (1491)
Q Consensus 574 ll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t-Gk~l~~l~~h~~~VtslafSPDG 637 (1491)
....+. ...+...|+|.+ ++.+|+.|...|.|..||+.. ..++.++..|...|++++|-|--
T Consensus 243 s~~~l~-y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 243 STDRLT-YSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccceee-ecCCcceeeecC-CceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 776665 355788999999 889999999999999999975 46899999999999999997765
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-15 Score=185.78 Aligned_cols=438 Identities=17% Similarity=0.216 Sum_probs=280.2
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC---CEEEEEECCCeEEEEECC
Q 000454 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN---ALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 239 L~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG---~lLASGS~DGtIrVWDl~ 315 (1491)
|-|-...-....||+|+++++.... ..|+||.+.||.++..+.+|..+++.+.+.|.. .++++++.+|.|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 4444444455679999999988754 689999999999999999999999999998854 478899999999999999
Q ss_pred CCCceeeeccCCCceEEEEecCC----CC-------ceEEEEEEeC--CCcEEEEccCCC-----CccceeecC-----C
Q 000454 316 DGLPISVLRGHTAAVTAIAFSPR----PG-------SVYQLLSSSD--DGTCRIWDARYS-----QFSPRIYIP-----R 372 (1491)
Q Consensus 316 tgk~i~~L~gHs~~VtsLaFSPd----g~-------s~~~LaSgS~--DGtVrIWDl~tg-----~~~~~i~~~-----~ 372 (1491)
.+..+.++..+ ..|..+.+.|. .. ....+.+.+. .+.++-+.+.+. ........+ .
T Consensus 91 ~~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~ 169 (792)
T KOG1963|consen 91 DGELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN 169 (792)
T ss_pred CcEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc
Confidence 99888877633 23333333221 00 0001111111 111111111100 000000000 0
Q ss_pred CCCccc----------------CCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCcee
Q 000454 373 PSDAVA----------------GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1491)
Q Consensus 373 ~~~~~~----------------g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1491)
+..... ............|...++|.+++|+++++|+|..||.|.+|.--.. .......
T Consensus 170 ~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-----~~~~~t~ 244 (792)
T KOG1963|consen 170 NSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-----SDDSETC 244 (792)
T ss_pred CCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-----ccccccc
Confidence 000000 0111222233446666899999999999999999999999976321 1112345
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccccccccc
Q 000454 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1491)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1491)
..+.-|...|.++.|+++| .+|++|+..|.+.+|.+.+++
T Consensus 245 t~lHWH~~~V~~L~fS~~G--------------------------~~LlSGG~E~VLv~Wq~~T~~-------------- 284 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDG--------------------------AYLLSGGREGVLVLWQLETGK-------------- 284 (792)
T ss_pred eEEEecccccceeEEecCC--------------------------ceEeecccceEEEEEeecCCC--------------
Confidence 6677899999999999987 699999999999999888743
Q ss_pred CCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCC-----------CCCe
Q 000454 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-----------TEST 585 (1491)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH-----------s~~V 585 (1491)
.+-+..-...|..+.+|||+.+.+....|..|.+..+.+.....++.|- .+-.
T Consensus 285 ----------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 285 ----------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred ----------------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 1112223567899999999999999999999999988765554444332 3346
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-----------CCcceEEEEEcCCCCEEEEEe--------CC
Q 000454 586 YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI-----------SRFRLVDGKFSPDGASIILSD--------DV 646 (1491)
Q Consensus 586 tsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~-----------h~~~VtslafSPDG~~LAsgs--------~D 646 (1491)
+.+++.| ....++-.+..|.|.+||+.+...+..+.. +.-.++.++++-.|.+++++. .|
T Consensus 349 t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~ 427 (792)
T KOG1963|consen 349 TGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD 427 (792)
T ss_pred eeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence 7788888 556666789999999999988877665542 123577888888999999873 23
Q ss_pred --CcEEEEECCCCcccccc-----------c-ceeeecCCCc-ceEEccCCCEEEccccccCccccCCCccccccCCCCC
Q 000454 647 --GQLYILNTGQGESQKDA-----------K-YDQFFLGDYR-PLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYP 711 (1491)
Q Consensus 647 --G~I~IWdl~tG~~~~~~-----------~-~~~~fs~D~r-~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p 711 (1491)
-.+++|-......-..+ . ...++.+.-. ..++...+..+ .+|-+++..-.. +..
T Consensus 428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~--------KiW~~~~~~n~~---k~~ 496 (792)
T KOG1963|consen 428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDF--------KIWVFTDDSNIY---KKS 496 (792)
T ss_pred ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeE--------EEEEEecccccC---cCc
Confidence 35678877544321111 1 1222333322 33444344433 246543322111 111
Q ss_pred Cc----chhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCc
Q 000454 712 EP----YQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADL 757 (1491)
Q Consensus 712 ~~----~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~ 757 (1491)
.. .++.+ +.....+++||.||..||++ .+..+.+|+..+.
T Consensus 497 s~W~c~~i~sy--~k~~i~a~~fs~dGslla~s----~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 497 SNWTCKAIGSY--HKTPITALCFSQDGSLLAVS----FDDTITIWDYDTK 540 (792)
T ss_pred cceEEeeeecc--ccCcccchhhcCCCcEEEEe----cCCEEEEecCCCh
Confidence 11 11112 45567779999999999995 7889999999764
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-17 Score=177.65 Aligned_cols=263 Identities=21% Similarity=0.290 Sum_probs=194.1
Q ss_pred EccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC---CCEEEEEECCCeEEEEEC
Q 000454 239 VRGHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN---NALVASASNDCIIRVWRL 314 (1491)
Q Consensus 239 L~GH~~~Vt~VaFSp-DG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPD---G~lLASGS~DGtIrVWDl 314 (1491)
-.+|.-.|..+.|-| |.-++.+++-|.+++|||+.|.+....|+ ..+.|.+-++||- -.+||+|..+-.|++-|+
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence 347889999999999 66688899999999999999998888877 5778999999983 448888999999999999
Q ss_pred CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC-CccceeecCCCCCcccCCCCCCCCCCCCCCc
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS-QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg-~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1491)
.+|.+.+++.||.+.|.++.|+|... +.|++|+.||.|++||++.. .+...+.... +...........|.+
T Consensus 176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e--~vLatgsaDg~irlWDiRrasgcf~~lD~hn------~k~~p~~~~n~ah~g 247 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRDGVLAVEWSPSSE--WVLATGSADGAIRLWDIRRASGCFRVLDQHN------TKRPPILKTNTAHYG 247 (397)
T ss_pred cCCcceeeeccccCceEEEEeccCce--eEEEecCCCceEEEEEeecccceeEEeeccc------CccCccccccccccc
Confidence 99999999999999999999999876 68999999999999999865 3333332111 111222233556889
Q ss_pred ceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcc
Q 000454 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 394 ~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
.|..++|..+|.++++.+.|..+++|+..++....... +..+..-..|- .+. +. +.+
T Consensus 248 kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~-g~~~~n~~~~~-~~~-~~-~~~------------------- 304 (397)
T KOG4283|consen 248 KVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREF-GPIIHNQTTSF-AVH-IQ-SMD------------------- 304 (397)
T ss_pred eeeeeeecccchhhhhccCccceEEeecccCccccccc-ccccccccccc-eEE-Ee-ecc-------------------
Confidence 99999999999999999999999999997764321110 01111000000 000 11 111
Q ss_pred ccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1491)
Q Consensus 474 ~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~ 553 (1491)
...|+-.-.++.+.++.+-.+ ..+..+..|...|.|.++-|+-+
T Consensus 305 -------s~vfv~~p~~~~lall~~~sg-----------------------------s~ir~l~~h~k~i~c~~~~~~fq 348 (397)
T KOG4283|consen 305 -------SDVFVLFPNDGSLALLNLLEG-----------------------------SFVRRLSTHLKRINCAAYRPDFE 348 (397)
T ss_pred -------cceEEEEecCCeEEEEEccCc-----------------------------eEEEeeecccceeeEEeecCchh
Confidence 124444445567777665532 23444556777799999999999
Q ss_pred EEEEEeccceEEEEEC
Q 000454 554 FVLAAIMDCRICVWNA 569 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl 569 (1491)
...+|..|+.|+.|-.
T Consensus 349 ~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 349 QCFTGDMNGNIYMWSP 364 (397)
T ss_pred hhhccccCCccccccc
Confidence 9999999999999976
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=209.91 Aligned_cols=293 Identities=18% Similarity=0.305 Sum_probs=216.4
Q ss_pred EEEEcCCCC-EEEEE----------ECCCeEEEEECC--CC----CceeeeccCCCceEEEEecCCCCce-EEEEEEeCC
Q 000454 290 DLAVSSNNA-LVASA----------SNDCIIRVWRLP--DG----LPISVLRGHTAAVTAIAFSPRPGSV-YQLLSSSDD 351 (1491)
Q Consensus 290 sLafSPDG~-lLASG----------S~DGtIrVWDl~--tg----k~i~~L~gHs~~VtsLaFSPdg~s~-~~LaSgS~D 351 (1491)
.++|+|++. +||+| +.+.++-||.+. +. +++..+. -....+.++|.+.+... -+|+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 467888886 56655 234456666543 22 2333333 34567899999877521 148889999
Q ss_pred CcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCC
Q 000454 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSD 430 (1491)
Q Consensus 352 GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1491)
|.|.+||...-.. +...........|.+.|..+.|++.. ++||+|+.+|.|.|||+.+.......
T Consensus 90 G~I~ly~p~~~~~--------------~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~ 155 (1049)
T KOG0307|consen 90 GNIVLYDPASIIA--------------NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP 155 (1049)
T ss_pred CceEEecchhhcc--------------CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC
Confidence 9999999864200 11111123345689999999999965 59999999999999999764321111
Q ss_pred CCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccc
Q 000454 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
. -......|.+++|.... ...|++++.+|.+.|||++..+..
T Consensus 156 ~-------~~~~~~eI~~lsWNrkv-------------------------qhILAS~s~sg~~~iWDlr~~~pi------ 197 (1049)
T KOG0307|consen 156 G-------SQAPPSEIKCLSWNRKV-------------------------SHILASGSPSGRAVIWDLRKKKPI------ 197 (1049)
T ss_pred C-------CCCCcccceEeccchhh-------------------------hHHhhccCCCCCceeccccCCCcc------
Confidence 0 22346789999998643 357999999999999999964321
Q ss_pred ccccccCCCCCCCCCCCCCCCCceeccCC--CCCeeEEEEcCCCC-EEEEEeccc---eEEEEECCC-CceEEEEeCCCC
Q 000454 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPT--PRGVNMIVWSLDNR-FVLAAIMDC---RICVWNAAD-GSLVHSLTGHTE 583 (1491)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h--~~~VtsVafSPDG~-~LaSGs~DG---~IrIWDl~t-gkll~tL~gHs~ 583 (1491)
..+..+ ...+..++|+|++. .|++++.|. .|.+||++. ..+++++.+|..
T Consensus 198 -----------------------i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~ 254 (1049)
T KOG0307|consen 198 -----------------------IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR 254 (1049)
T ss_pred -----------------------cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc
Confidence 111111 23477899999875 466666543 599999875 457788899999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 000454 584 STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA-SIILSDDVGQLYILNTGQGE 658 (1491)
Q Consensus 584 ~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~-~LAsgs~DG~I~IWdl~tG~ 658 (1491)
.|.+|.|++.|.++|+|++.|+.|.+|+..+|+.+..+......++.+.|+|... .|++++-+|.|.|+.+..+.
T Consensus 255 GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999999999999999999999999999999998788899999999776 77888999999999986654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.6e-17 Score=186.24 Aligned_cols=265 Identities=15% Similarity=0.198 Sum_probs=205.3
Q ss_pred CEEEEEEcCCCC-EEEEEeCCCeEEEEECCC--CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCcee
Q 000454 245 AVYCAIFDRSGR-YVITGSDDRLVKIWSMET--AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1491)
Q Consensus 245 ~Vt~VaFSpDG~-~LATGS~DGtIrIWDl~T--g~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~ 321 (1491)
.|..+.|+.... .+|+.+.|..|++|.-.. ++....-+.....-.|++......|+++|+..++|+|||++...+.+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 389999998764 223445688999997532 22222111112244555555556899999999999999999777888
Q ss_pred eeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEEC
Q 000454 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1491)
Q Consensus 322 ~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafS 401 (1491)
.+++|...|++|.+.-... +|++++..|.|.|..+.++.....+.. +.+..|.-+.|+
T Consensus 116 ~lkdh~stvt~v~YN~~De---yiAsvs~gGdiiih~~~t~~~tt~f~~-------------------~sgqsvRll~ys 173 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDE---YIASVSDGGDIIIHGTKTKQKTTTFTI-------------------DSGQSVRLLRYS 173 (673)
T ss_pred hccCCcceeEEEEecCCcc---eeEEeccCCcEEEEecccCccccceec-------------------CCCCeEEEeecc
Confidence 8999999999999988776 999999999999999988876555532 234456789999
Q ss_pred CCCC-EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccC
Q 000454 402 ANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480 (1491)
Q Consensus 402 PDG~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~ 480 (1491)
+..+ +|.+++.+|.|.+||+... .........|..+...|+|+|..
T Consensus 174 ~skr~lL~~asd~G~VtlwDv~g~--------sp~~~~~~~HsAP~~gicfspsn------------------------- 220 (673)
T KOG4378|consen 174 PSKRFLLSIASDKGAVTLWDVQGM--------SPIFHASEAHSAPCRGICFSPSN------------------------- 220 (673)
T ss_pred cccceeeEeeccCCeEEEEeccCC--------CcccchhhhccCCcCcceecCCc-------------------------
Confidence 9766 5667899999999999642 23455678899999999999974
Q ss_pred CCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec
Q 000454 481 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM 560 (1491)
Q Consensus 481 ~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~ 560 (1491)
...|++.+.|..|.+||+...+.. ..+....+...++|+++|.+|++|..
T Consensus 221 e~l~vsVG~Dkki~~yD~~s~~s~------------------------------~~l~y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 221 EALLVSVGYDKKINIYDIRSQAST------------------------------DRLTYSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred cceEEEecccceEEEeeccccccc------------------------------ceeeecCCcceeeecCCceEEEeecC
Confidence 358999999999999999864311 11223456788999999999999999
Q ss_pred cceEEEEECCC-CceEEEEeCCCCCeEEEEEecCCC
Q 000454 561 DCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNP 595 (1491)
Q Consensus 561 DG~IrIWDl~t-gkll~tL~gHs~~VtsLafSPdd~ 595 (1491)
.|.|+.||++. ..++.++..|...|++|+|-| .+
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~-s~ 305 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP-SP 305 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeee-cc
Confidence 99999999975 568889999999999999988 44
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-16 Score=180.33 Aligned_cols=306 Identities=16% Similarity=0.237 Sum_probs=210.6
Q ss_pred EEEEEcCCCCEEEEEECC---Ce--EEEEECCCCCceeeeccCC----CceEEEEecCC----CCceEEEEEEeCCCcEE
Q 000454 289 TDLAVSSNNALVASASND---CI--IRVWRLPDGLPISVLRGHT----AAVTAIAFSPR----PGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 289 tsLafSPDG~lLASGS~D---Gt--IrVWDl~tgk~i~~L~gHs----~~VtsLaFSPd----g~s~~~LaSgS~DGtVr 355 (1491)
-.+.+-|..++|+++-.+ .. |+||+- ... ..+-.|. ..-.|++|... +...+++|.|+.|..|.
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~--~e~-nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNE--EEE-NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcC--CCc-ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 345566766677776443 22 445542 221 1122222 23356666533 22235999999999999
Q ss_pred EEccCCCCc-cceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCCCCCCCCCCCCC
Q 000454 356 IWDARYSQF-SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1491)
Q Consensus 356 IWDl~tg~~-~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~ 433 (1491)
|||+.-... .+.+.+...................+|...|..++|+.. .+.||+|+.|.+|.+||+.++
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g--------- 276 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG--------- 276 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC---------
Confidence 999874322 122222111111111111223344568888999999875 468999999999999999874
Q ss_pred ceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccc
Q 000454 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1491)
Q Consensus 434 ~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1491)
++...+..|.+.|.++.|+|.. +..|++|+.|+++.+.|.+.....
T Consensus 277 ~p~~s~~~~~k~Vq~l~wh~~~-------------------------p~~LLsGs~D~~V~l~D~R~~~~s--------- 322 (463)
T KOG0270|consen 277 KPKSSITHHGKKVQTLEWHPYE-------------------------PSVLLSGSYDGTVALKDCRDPSNS--------- 322 (463)
T ss_pred CcceehhhcCCceeEEEecCCC-------------------------ceEEEeccccceEEeeeccCcccc---------
Confidence 4566777899999999999865 468999999999999999852211
Q ss_pred cccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCE-EEEEeccceEEEEECCC-CceEEEEeCCCCCeEEEEEe
Q 000454 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF-VLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVH 591 (1491)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~-LaSGs~DG~IrIWDl~t-gkll~tL~gHs~~VtsLafS 591 (1491)
.......+.|-.++|.|.... ++++..||+|+-+|++. ++++.++.+|.++|.+|+++
T Consensus 323 --------------------~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n 382 (463)
T KOG0270|consen 323 --------------------GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVN 382 (463)
T ss_pred --------------------CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEec
Confidence 111223456888999987654 66677999999999987 49999999999999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCce--EEEEeeCCcceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCccc
Q 000454 592 PFNPRIAMSAGYDGKTIVWDIWEGIP--IRIYEISRFRLVDGKFSPDGA-SIILSDDVGQLYILNTGQGESQ 660 (1491)
Q Consensus 592 Pdd~~lLaSgS~DGtIrIWDl~tGk~--l~~l~~h~~~VtslafSPDG~-~LAsgs~DG~I~IWdl~tG~~~ 660 (1491)
+..+.+++|++.|+.|++|++..-.+ +..-...-+...|+++.|+-. +||+|+..+.++|||+.++...
T Consensus 383 ~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 383 IQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 98899999999999999999864433 221111122355778888754 5677888889999999877543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.2e-16 Score=170.50 Aligned_cols=277 Identities=19% Similarity=0.280 Sum_probs=204.1
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCC--------Ce----EEEEEe-cCCCCeEEEEEc-------CCCCEEEEEECC
Q 000454 247 YCAIFDRSGRYVITGSDDRLVKIWSMET--------AY----CLASCR-GHEGDITDLAVS-------SNNALVASASND 306 (1491)
Q Consensus 247 t~VaFSpDG~~LATGS~DGtIrIWDl~T--------g~----~l~tL~-gH~~~VtsLafS-------PDG~lLASGS~D 306 (1491)
..+.|+|||..|++-+.|..+.+|++.. +. ...+++ .-...|.+.+|- |+..++|+.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 3578999999999999999999999842 11 111222 123567777775 577799999999
Q ss_pred CeEEEEECCCCCceeeecc--CCC---ceEEEEecCCCCceEEEEEEeCCCcEEEEcc-CCCCccceeecCCCCCcccCC
Q 000454 307 CIIRVWRLPDGLPISVLRG--HTA---AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA-RYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~g--Hs~---~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl-~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
.-|.+||.-+|+....+.+ |.. ...+++|+|||. +|++ +....|+++|+ +.|..-......
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---qlfa-GykrcirvFdt~RpGr~c~vy~t~--------- 199 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---QLFA-GYKRCIRVFDTSRPGRDCPVYTTV--------- 199 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---eEee-cccceEEEeeccCCCCCCcchhhh---------
Confidence 9999999999998887764 332 457899999997 5554 55678999999 555433322110
Q ss_pred CCCCCCCCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccc
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~ 459 (1491)
.....+..+-|.|++|+|. ...+++|+....+-||.-.. ..++..+-+|.+.|+.++|.++|
T Consensus 200 ----~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~---------~~pl~llggh~gGvThL~~~edG---- 262 (406)
T KOG2919|consen 200 ----TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG---------RRPLQLLGGHGGGVTHLQWCEDG---- 262 (406)
T ss_pred ----hcccccccceeeeeeccCCCCcceeeecccceeeeEecCC---------CCceeeecccCCCeeeEEeccCc----
Confidence 0112345677899999995 45899999888888887654 45677888999999999999997
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeC-CCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~-DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
+.|++|+. |-.|..||++..+ .++..+..
T Consensus 263 ----------------------n~lfsGaRk~dkIl~WDiR~~~----------------------------~pv~~L~r 292 (406)
T KOG2919|consen 263 ----------------------NKLFSGARKDDKILCWDIRYSR----------------------------DPVYALER 292 (406)
T ss_pred ----------------------CeecccccCCCeEEEEeehhcc----------------------------chhhhhhh
Confidence 57777765 7889999999633 11112222
Q ss_pred CCC---CeeEEEEcCCCCEEEEEeccceEEEEECCC-CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCC
Q 000454 539 TPR---GVNMIVWSLDNRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD 604 (1491)
Q Consensus 539 h~~---~VtsVafSPDG~~LaSGs~DG~IrIWDl~t-gkll~tL~gHs~~VtsLafSPdd~~lLaSgS~D 604 (1491)
|.. .-.-+...|+|++|++|+.||.|++||+++ |..+..+..|...|+.++++|. --++++++..
T Consensus 293 hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~-mpilatssGq 361 (406)
T KOG2919|consen 293 HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI-MPILATSSGQ 361 (406)
T ss_pred hccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcc-cceeeeccCc
Confidence 221 112355678999999999999999999998 7888889999999999999994 4566666543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-16 Score=179.83 Aligned_cols=297 Identities=21% Similarity=0.231 Sum_probs=207.1
Q ss_pred ccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC--------C--------CeEEEEEecCCCCeEEEEEc
Q 000454 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME--------T--------AYCLASCRGHEGDITDLAVS 294 (1491)
Q Consensus 231 ~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~--------T--------g~~l~tL~gH~~~VtsLafS 294 (1491)
.+.+.+..|.+|..+|++|.|+|+|..||+|+++|.|.+|-.. + ....+.+++|...|..++|+
T Consensus 53 ~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws 132 (434)
T KOG1009|consen 53 MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS 132 (434)
T ss_pred eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc
Confidence 3556778899999999999999999999999999999999865 3 34566788999999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCC-C
Q 000454 295 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR-P 373 (1491)
Q Consensus 295 PDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~-~ 373 (1491)
|++.++++++.|..+++||+..|..+..+..|...|..++|.|-++ ++++-+.|...+.+.+...+.+..+.... +
T Consensus 133 ~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q---yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~ 209 (434)
T KOG1009|consen 133 PDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ---YVASKSSDRHPEGFSAKLKQVIKRHGLDIMP 209 (434)
T ss_pred CCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhh---hhhhhccCcccceeeeeeeeeeeeeeeeEee
Confidence 9999999999999999999999999999999999999999999987 89999999877877776555444332100 0
Q ss_pred CCcccCCCCCC--CCCCCCCCcceEEEEECCCCCEEEEecC----Cc-----eEEEEeCCCCCCCCCCCCCceeeeecCC
Q 000454 374 SDAVAGRNMAP--SSSAGPQSHQIFCCAFNANGTVFVTGSS----DT-----LARVWNACKPNTDDSDQPNHEIDVLSGH 442 (1491)
Q Consensus 374 ~~~~~g~~~~~--~~s~~~h~~~V~slafSPDG~~LasGs~----DG-----~IrVWDl~t~~~~~s~~~~~~i~~l~gH 442 (1491)
........... .........-...++|+|+|.+|++... .+ ..++|+-. ...+++..+.+.
T Consensus 210 ~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk--------~l~rP~~~lp~~ 281 (434)
T KOG1009|consen 210 AKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRK--------DLKRPAARLPSP 281 (434)
T ss_pred ecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccc--------cccCceeecCCC
Confidence 00000000000 0001112233557899999999988642 22 22344332 124456667777
Q ss_pred CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCC
Q 000454 443 ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP 522 (1491)
Q Consensus 443 ~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~ 522 (1491)
...+..+.|+|-....+ ....... .+. .....++.......+.+||..+.....
T Consensus 282 ~k~~lavr~~pVy~elr----p~~~~~~--~~~---lpyrlvfaiAt~~svyvydtq~~~P~~----------------- 335 (434)
T KOG1009|consen 282 KKPALAVRFSPVYYELR----PLSSEKF--LFV---LPYRLVFAIATKNSVYVYDTQTLEPLA----------------- 335 (434)
T ss_pred CcceEEEEeeeeEEEec----ccccccc--ccc---cccceEEEEeecceEEEeccccccceE-----------------
Confidence 77888888887532111 1111100 011 112345555666789999988633211
Q ss_pred CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceE
Q 000454 523 MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV 575 (1491)
Q Consensus 523 ~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll 575 (1491)
....-|-..|+.++|++||.+|+..+.||...+..+...++-
T Consensus 336 -----------~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 336 -----------VVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred -----------EEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 112236678999999999999999999998888777665543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-16 Score=173.22 Aligned_cols=286 Identities=19% Similarity=0.241 Sum_probs=207.6
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCC-------Cc-----eeeec-cCCCceEEEEecCCC----CceEEEEEEeC
Q 000454 288 ITDLAVSSNNALVASASNDCIIRVWRLPDG-------LP-----ISVLR-GHTAAVTAIAFSPRP----GSVYQLLSSSD 350 (1491)
Q Consensus 288 VtsLafSPDG~lLASGS~DGtIrVWDl~tg-------k~-----i~~L~-gHs~~VtsLaFSPdg----~s~~~LaSgS~ 350 (1491)
...+.|+|||..|++-+.|..+.+|++... .. ...++ .....|+..+|-+.- ....++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 446789999999999999999999998531 11 11111 234578888886321 12238999999
Q ss_pred CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCC
Q 000454 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1491)
Q Consensus 351 DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1491)
+.-|++||.-+|+....+......+ .-....+++|+|||..|++|. ...|+|||+..+......
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~d---------------e~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQD---------------EYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred cCceeeeeccccccccchhhhhhHH---------------hhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcc
Confidence 9999999999998766553211111 112356899999999999876 578999999543322111
Q ss_pred CCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccc
Q 000454 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
.+. ....-.+..+.|.+++|+|.. ...++.|+....+-|+.-..
T Consensus 196 y~t-~~~~k~gq~giisc~a~sP~~-------------------------~~~~a~gsY~q~~giy~~~~---------- 239 (406)
T KOG2919|consen 196 YTT-VTKGKFGQKGIISCFAFSPMD-------------------------SKTLAVGSYGQRVGIYNDDG---------- 239 (406)
T ss_pred hhh-hhcccccccceeeeeeccCCC-------------------------CcceeeecccceeeeEecCC----------
Confidence 110 111123446788899999864 24788888888887775443
Q ss_pred ccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec-cceEEEEECCC-CceEEEEeCCCC-CeEE
Q 000454 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAAD-GSLVHSLTGHTE-STYV 587 (1491)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~-DG~IrIWDl~t-gkll~tL~gHs~-~Vts 587 (1491)
..++..+.+|.++|+.++|.++|..|++|.. |-.|..||++. +.++..|..|.+ .-..
T Consensus 240 -------------------~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQR 300 (406)
T KOG2919|consen 240 -------------------RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQR 300 (406)
T ss_pred -------------------CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccce
Confidence 2456667789999999999999999999874 67899999975 566777877766 3334
Q ss_pred EEE--ecCCCcEEEEEeCCCcEEEEeCCC-CceEEEEeeCCcceEEEEEcCCCCEEEEEeC
Q 000454 588 LDV--HPFNPRIAMSAGYDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDGASIILSDD 645 (1491)
Q Consensus 588 Laf--SPdd~~lLaSgS~DGtIrIWDl~t-Gk~l~~l~~h~~~VtslafSPDG~~LAsgs~ 645 (1491)
|-| .| .+.+|++|+.||.|++||+.+ |..+..+..+..-|..+++.|--.++|+++.
T Consensus 301 I~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 301 ILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred EEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 444 45 668999999999999999998 7778888888889999999999877777765
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.2e-17 Score=186.20 Aligned_cols=331 Identities=18% Similarity=0.308 Sum_probs=240.8
Q ss_pred cccCCCcccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcC--CCC
Q 000454 222 AIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSS--NNA 298 (1491)
Q Consensus 222 ~~a~~~~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~-gH~~~VtsLafSP--DG~ 298 (1491)
.+......++.+.+...|.+|.+.|..|.|...|..|++||+|.+|.+||+..+.....+. ||...|....|-| +..
T Consensus 121 ~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 121 EACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred HhhhhHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCc
Confidence 3333445678888999999999999999999999999999999999999999998877765 8999999999988 456
Q ss_pred EEEEEECCCeEEEEECCC-CCc--eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCC
Q 000454 299 LVASASNDCIIRVWRLPD-GLP--ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1491)
Q Consensus 299 lLASGS~DGtIrVWDl~t-gk~--i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~ 375 (1491)
.|++++.||.|++=.+.. +.+ ...+..|.++|.-++.-|+.. +.|++++.|+.|.-+|++++.....+.....
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~-- 276 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCREA-- 276 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCC--CcccccccccceeeeeeccCCccceeeeecc--
Confidence 899999999999987643 322 345667999999999999865 5799999999999999988765544431110
Q ss_pred cccCCCCCCCCCCCCCCcceEEEEECCCCC-EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeec------CCCCCceE
Q 000454 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS------GHENDVNY 448 (1491)
Q Consensus 376 ~~~g~~~~~~~s~~~h~~~V~slafSPDG~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~------gH~~~V~s 448 (1491)
.....-....++..|-.. .+++|+.|..+++||.+........ ..+..+. ...-.|++
T Consensus 277 ------------~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n---~~~~~f~p~hl~~d~~v~ITg 341 (559)
T KOG1334|consen 277 ------------DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN---GVLDKFCPHHLVEDDPVNITG 341 (559)
T ss_pred ------------CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc---chhhhcCCccccccCccccee
Confidence 001123567888988654 8999999999999998764321111 1122222 22346888
Q ss_pred EEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCC
Q 000454 449 VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528 (1491)
Q Consensus 449 VafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~ 528 (1491)
++|+.++ .-|++.-.|-.|+++...-+. + ..+.+..+.
T Consensus 342 l~Ysh~~--------------------------sElLaSYnDe~IYLF~~~~~~--G--------------~~p~~~s~~ 379 (559)
T KOG1334|consen 342 LVYSHDG--------------------------SELLASYNDEDIYLFNKSMGD--G--------------SEPDPSSPR 379 (559)
T ss_pred EEecCCc--------------------------cceeeeecccceEEecccccc--C--------------CCCCCCcch
Confidence 8888664 356666677778888332211 0 000000000
Q ss_pred CCCCceeccCCCC--CeeEEE-EcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC
Q 000454 529 RGGPRQRILPTPR--GVNMIV-WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG 605 (1491)
Q Consensus 529 ~~~~~~~l~~h~~--~VtsVa-fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DG 605 (1491)
.......+.+|.. .|..+- |-|...|+++|+..|.|.||+-.+++++..+.+....|+||.-||.. -+||++|-|.
T Consensus 380 ~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~-PvLAsSGid~ 458 (559)
T KOG1334|consen 380 EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL-PVLASSGIDH 458 (559)
T ss_pred hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC-chhhccCCcc
Confidence 0111122455543 355554 57888999999999999999999999999998888899999999955 4778999999
Q ss_pred cEEEEeCCC
Q 000454 606 KTIVWDIWE 614 (1491)
Q Consensus 606 tIrIWDl~t 614 (1491)
-|+||-..+
T Consensus 459 DVKIWTP~~ 467 (559)
T KOG1334|consen 459 DVKIWTPLT 467 (559)
T ss_pred ceeeecCCc
Confidence 999998633
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=187.45 Aligned_cols=271 Identities=23% Similarity=0.283 Sum_probs=196.3
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------CeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--------AYCLASCRGHEGDITDLAVSSNNALVASA 303 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T--------g~~l~tL~gH~~~VtsLafSPDG~lLASG 303 (1491)
++.+-.++..|.+.|+.++|.+....|++|+.||+|++|+++. -+.+.+|++|.++|.|+++.+++..+++|
T Consensus 283 ~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 283 KWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred ecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence 3445558999999999999999999999999999999999932 35788999999999999999999999999
Q ss_pred ECCCeEEEEECCCC----------CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCC
Q 000454 304 SNDCIIRVWRLPDG----------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373 (1491)
Q Consensus 304 S~DGtIrVWDl~tg----------k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~ 373 (1491)
+.||+|+.|++... .....+.||++.|+.+++++... .|++++.||+|++|+...... .++..
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~---~Llscs~DgTvr~w~~~~~~~-~~f~~--- 435 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD---RLLSCSSDGTVRLWEPTEESP-CTFGE--- 435 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc---ceeeecCCceEEeeccCCcCc-cccCC---
Confidence 99999999976421 23456789999999999999876 899999999999999876553 11110
Q ss_pred CCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEc
Q 000454 374 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS 452 (1491)
Q Consensus 374 ~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafS 452 (1491)
....+...++.|-... ..+++ +.....+.+.+.. -+..+.+.
T Consensus 436 ---------------~~e~g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~e-------------------v~s~~~~~ 478 (577)
T KOG0642|consen 436 ---------------PKEHGYPLSVDRTSSRPAHSLA---SFRFGYTSIDDME-------------------VVSDLLIF 478 (577)
T ss_pred ---------------ccccCCcceEeeccchhHhhhh---hcccccccchhhh-------------------hhhheeec
Confidence 0112223334432211 11111 1112222221100 00011111
Q ss_pred cCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 000454 453 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532 (1491)
Q Consensus 453 pdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 532 (1491)
+. +.++..
T Consensus 479 ~s---------------------------------~~~~~~--------------------------------------- 486 (577)
T KOG0642|consen 479 ES---------------------------------SASPGP--------------------------------------- 486 (577)
T ss_pred cc---------------------------------cCCCcc---------------------------------------
Confidence 10 000000
Q ss_pred ceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 533 ~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
.....++.+.+.|.+.+.+++..|+.|+++|..++.+++....|...++++++.| ++-+|++++.||.|++|.+
T Consensus 487 -----~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 487 -----RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred -----cccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC-CCceEEeecCCceeehhhc
Confidence 0112466788999999999999999999999999999999999999999999999 7778889999999999999
Q ss_pred CCCceEEEEeeC
Q 000454 613 WEGIPIRIYEIS 624 (1491)
Q Consensus 613 ~tGk~l~~l~~h 624 (1491)
....++.....|
T Consensus 561 d~k~~~~es~~~ 572 (577)
T KOG0642|consen 561 DVKTCVLESTAH 572 (577)
T ss_pred cchheeeccccc
Confidence 877776655443
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-16 Score=174.71 Aligned_cols=276 Identities=15% Similarity=0.325 Sum_probs=202.0
Q ss_pred cCCCCEEEEEEcCCC----CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECC
Q 000454 241 GHRNAVYCAIFDRSG----RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN-ALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 241 GH~~~Vt~VaFSpDG----~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG-~lLASGS~DGtIrVWDl~ 315 (1491)
.|...-+.++|+-|- .+||.|+.-|.|+|.|+.++++...+.+|...|..|.|.|+. ++|++++.|..|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 377888999998753 478999999999999999999999999999999999999965 699999999999999999
Q ss_pred CCCceeeec---cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecC-----CCCCc--cc-CCCCCC
Q 000454 316 DGLPISVLR---GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP-----RPSDA--VA-GRNMAP 384 (1491)
Q Consensus 316 tgk~i~~L~---gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~-----~~~~~--~~-g~~~~~ 384 (1491)
+..++..+. +|.+.|.++.|++++. +|++++.|.+|++|++...++...+... ..... .. ......
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd---~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGD---RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCC---eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 999999875 7999999999999998 9999999999999999865443322111 00000 00 001111
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCC-----CCCCCCceeeeecCCCCCceEEEEccCccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTD-----DSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~-----~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~ 459 (1491)
..+..-|...|-|+.|- |.++++-+.++.|..|........ ........+..+......|.-|.|.-+.
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~---- 317 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP---- 317 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH----
Confidence 22445677888888886 578999999999999987321111 0111112333444445566666665332
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1491)
..+.||.|...|.|.+||+...... ......-...
T Consensus 318 --------------------~~~~la~gnq~g~v~vwdL~~~ep~-------------------------~~ttl~~s~~ 352 (385)
T KOG1034|consen 318 --------------------WQKMLALGNQSGKVYVWDLDNNEPP-------------------------KCTTLTHSKS 352 (385)
T ss_pred --------------------HHHHHhhccCCCcEEEEECCCCCCc-------------------------cCceEEeccc
Confidence 1468999999999999999863311 0111111223
Q ss_pred CCCeeEEEEcCCCCEEEEEeccceEEEEECC
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAA 570 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~ 570 (1491)
...|...+||.||.+|+..+.|++|.-||..
T Consensus 353 ~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 353 GSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 4568899999999999999999999999863
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=166.74 Aligned_cols=270 Identities=21% Similarity=0.347 Sum_probs=203.2
Q ss_pred CCCeEEEEECCCCe---EEEEEecCCCCeEEEEEcCC-CCEEEEEECC-------CeEEEEECCCC---------Cceee
Q 000454 263 DDRLVKIWSMETAY---CLASCRGHEGDITDLAVSSN-NALVASASND-------CIIRVWRLPDG---------LPISV 322 (1491)
Q Consensus 263 ~DGtIrIWDl~Tg~---~l~tL~gH~~~VtsLafSPD-G~lLASGS~D-------GtIrVWDl~tg---------k~i~~ 322 (1491)
.|+.|.+.++..+. .-..|..|.+.|+.|+-+|- .++|+++..+ -.+.||.+... +++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 36788887776542 23456778999999999994 4566666542 24789988643 33444
Q ss_pred ec-cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCcc-ceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEE
Q 000454 323 LR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS-PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1491)
Q Consensus 323 L~-gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~-~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slaf 400 (1491)
+. .+-+.|.|+.|.|++. .|++-. |..|.+|++..+..+ ..+.. .....+....++-+|
T Consensus 118 Ldteavg~i~cvew~Pns~---klasm~-dn~i~l~~l~ess~~vaev~s---------------s~s~e~~~~ftsg~W 178 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSD---KLASMD-DNNIVLWSLDESSKIVAEVLS---------------SESAEMRHSFTSGAW 178 (370)
T ss_pred CCHHHhCceeeEEEcCCCC---eeEEec-cCceEEEEcccCcchheeecc---------------cccccccceeccccc
Confidence 54 4567899999999886 666665 788999999877652 22211 111225667888899
Q ss_pred CC--CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 401 NA--NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 401 SP--DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
+| +|+.+++.+ |+++..||+++.+. ....-.+|...|..+.|.|+.
T Consensus 179 spHHdgnqv~tt~-d~tl~~~D~RT~~~--------~~sI~dAHgq~vrdlDfNpnk----------------------- 226 (370)
T KOG1007|consen 179 SPHHDGNQVATTS-DSTLQFWDLRTMKK--------NNSIEDAHGQRVRDLDFNPNK----------------------- 226 (370)
T ss_pred CCCCccceEEEeC-CCcEEEEEccchhh--------hcchhhhhcceeeeccCCCCc-----------------------
Confidence 98 677777654 89999999987432 233346788899999999975
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC-CCEEEE
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD-NRFVLA 557 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD-G~~LaS 557 (1491)
..+|++|+.||.|+|||.+..+ .++..+.+|...|.+|.|.|. .++|++
T Consensus 227 --q~~lvt~gDdgyvriWD~R~tk----------------------------~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 227 --QHILVTCGDDGYVRIWDTRKTK----------------------------FPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred --eEEEEEcCCCccEEEEeccCCC----------------------------ccccccCCCceEEEEEEecCccceEEEe
Confidence 3589999999999999998633 466778889999999999995 467888
Q ss_pred EeccceEEEEECCCC-----------------------------ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 000454 558 AIMDCRICVWNAADG-----------------------------SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608 (1491)
Q Consensus 558 Gs~DG~IrIWDl~tg-----------------------------kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIr 608 (1491)
|+.|..|.+|.+..- ..+.++..|.+.|++++|+..++.++|+-++||.+.
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 999999999976421 124567789999999999999999999999999999
Q ss_pred EEeCC
Q 000454 609 VWDIW 613 (1491)
Q Consensus 609 IWDl~ 613 (1491)
|=.+.
T Consensus 357 Is~V~ 361 (370)
T KOG1007|consen 357 ISSVP 361 (370)
T ss_pred eecCC
Confidence 87764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.3e-16 Score=181.38 Aligned_cols=276 Identities=13% Similarity=0.190 Sum_probs=214.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccc
Q 000454 287 DITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSP 366 (1491)
Q Consensus 287 ~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~ 366 (1491)
.|..++|-|||..|+.+.. ..+.|||...|..+.++++|...|++++|+.+|+ .+++|+.|..|.+|.-.-...+.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk---rFASG~aDK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK---RFASGSADKSVIIWTSKLEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCc---eeccCCCceeEEEecccccceee
Confidence 7999999999998877754 4799999999999999999999999999999998 99999999999999864322111
Q ss_pred eeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCc
Q 000454 367 RIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDV 446 (1491)
Q Consensus 367 ~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V 446 (1491)
..|...|.|+.|+|-...|++++-. ..-+|..... .+. -......|
T Consensus 90 ----------------------YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK----------~V~-K~kss~R~ 135 (1081)
T KOG1538|consen 90 ----------------------YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK----------SVS-KHKSSSRI 135 (1081)
T ss_pred ----------------------eccCCeeeEeecCchHHHhhhcchh-hccccChhhh----------hHH-hhhhheeE
Confidence 2488999999999999888887743 3457876421 111 11223467
Q ss_pred eEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCC
Q 000454 447 NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQ 526 (1491)
Q Consensus 447 ~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~ 526 (1491)
.+.+|..+| .+|+.|-.+|+|.|-+-....
T Consensus 136 ~~CsWtnDG--------------------------qylalG~~nGTIsiRNk~gEe------------------------ 165 (1081)
T KOG1538|consen 136 ICCSWTNDG--------------------------QYLALGMFNGTISIRNKNGEE------------------------ 165 (1081)
T ss_pred EEeeecCCC--------------------------cEEEEeccCceEEeecCCCCc------------------------
Confidence 888998886 699999999999987433211
Q ss_pred CCCCCCceeccCCCCCeeEEEEcCCC-----CEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEE
Q 000454 527 PPRGGPRQRILPTPRGVNMIVWSLDN-----RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601 (1491)
Q Consensus 527 ~~~~~~~~~l~~h~~~VtsVafSPDG-----~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSg 601 (1491)
...+.+.-+.+.+|.+++|+|.. ..+++.....++.+|.+ +|+.+..-+.-.-.-.|+.+.| ++.+++.|
T Consensus 166 ---k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~-NGEy~LiG 240 (1081)
T KOG1538|consen 166 ---KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFT-NGEYILLG 240 (1081)
T ss_pred ---ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheecc-CCcEEEEc
Confidence 12233344567889999999963 46888888888888887 4555543332233346888888 67777789
Q ss_pred eCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000454 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 602 S~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~t 656 (1491)
|.|+.+.+|-- .|..+.++-.....|+.++..|++++++.|+.||+|..|++..
T Consensus 241 Gsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 241 GSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 99999999975 7888888877777999999999999999999999999999854
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=171.71 Aligned_cols=281 Identities=17% Similarity=0.277 Sum_probs=209.6
Q ss_pred CEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcc
Q 000454 298 ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1491)
Q Consensus 298 ~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~ 377 (1491)
+.+|++...|.|++||..+++.+..++++...+..+.|.... .++.+++|+.||+|++||++......++....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d-s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~----- 114 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD-SPHGVISCSSDGTVRLWDIRSQAESARISWTQ----- 114 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCC-CCCeeEEeccCCeEEEEEeecchhhhheeccC-----
Confidence 578888899999999999999999999999999999998753 23489999999999999999887666653311
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC----CceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEcc
Q 000454 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS----DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 453 (1491)
Q Consensus 378 ~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~----DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSp 453 (1491)
.......|++..-.++.+++|+. +-.|.+||++..+. ..-.....|...|++|.|+|
T Consensus 115 ------------~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq-------~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 115 ------------QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ-------LLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred ------------CCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccc-------hhhhhhhhccCcceeEEecC
Confidence 12345678888778889998864 67899999986432 12334578999999999999
Q ss_pred CccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000454 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1491)
Q Consensus 454 dg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (1491)
.. +++|++||.||.|.+||+.... ....+
T Consensus 176 ~~-------------------------pnlLlSGSvDGLvnlfD~~~d~--------------------------EeDaL 204 (376)
T KOG1188|consen 176 SD-------------------------PNLLLSGSVDGLVNLFDTKKDN--------------------------EEDAL 204 (376)
T ss_pred CC-------------------------CCeEEeecccceEEeeecCCCc--------------------------chhhH
Confidence 75 6899999999999999988521 12344
Q ss_pred eeccCCCCCeeEEEEcCCC-CEEEEEeccceEEEEECCCCceEEEEeCCC----------CCeEEEE-EecCCCcEEEEE
Q 000454 534 QRILPTPRGVNMIVWSLDN-RFVLAAIMDCRICVWNAADGSLVHSLTGHT----------ESTYVLD-VHPFNPRIAMSA 601 (1491)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG-~~LaSGs~DG~IrIWDl~tgkll~tL~gHs----------~~VtsLa-fSPdd~~lLaSg 601 (1491)
.....+...|.++.|..++ +.|.+-+...+..+|++..+.....+.... .--+-|. .+|-+..+++.+
T Consensus 205 ~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~ 284 (376)
T KOG1188|consen 205 LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALA 284 (376)
T ss_pred HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEe
Confidence 5556677889999999887 458888889999999999887655443221 0001122 235445555555
Q ss_pred eC-CCcEEEEeCC---C---CceEEEEeeCCc-ceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 602 GY-DGKTIVWDIW---E---GIPIRIYEISRF-RLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 602 S~-DGtIrIWDl~---t---Gk~l~~l~~h~~-~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
+. -|...++-+. + ++.+..+.+++. -|.++.|.-.+.++.+|++||.|.+|..
T Consensus 285 g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 285 GTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 54 5555555433 2 456667776444 5668899889999999999999999996
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.2e-15 Score=181.73 Aligned_cols=288 Identities=17% Similarity=0.232 Sum_probs=209.6
Q ss_pred CeEEEEECCCC-CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCC
Q 000454 307 CIIRVWRLPDG-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1491)
Q Consensus 307 GtIrVWDl~tg-k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~ 385 (1491)
+.+.||++... .+-..+. ....|++++|+|... .+|+.|..+|.|.+||++.+...... ...
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p--~ll~gG~y~GqV~lWD~~~~~~~~~s--------------~ls 284 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDP--NLLAGGCYNGQVVLWDLRKGSDTPPS--------------GLS 284 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCc--ceEEeeccCceEEEEEccCCCCCCCc--------------ccc
Confidence 47999999876 4444444 567899999999865 48999999999999999877653211 112
Q ss_pred CCCCCCCcceEEEEECCCC--CEEEEecCCceEEEEeCCCCCCCCCCCCCcee---eeecCCCCCceEEEEccCcccccc
Q 000454 386 SSAGPQSHQIFCCAFNANG--TVFVTGSSDTLARVWNACKPNTDDSDQPNHEI---DVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 386 ~s~~~h~~~V~slafSPDG--~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i---~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
.....|...++.+.|..+- .-|++++.||.|..|+++.-............ ..-......++++.|.+.-
T Consensus 285 ~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~----- 359 (555)
T KOG1587|consen 285 ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD----- 359 (555)
T ss_pred cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC-----
Confidence 3345688899999997654 44999999999999988653321111110000 0001223456777777643
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 540 (1491)
+..|+.|+.+|.|..-+-...+... ............|.
T Consensus 360 --------------------p~~FiVGTe~G~v~~~~r~g~~~~~---------------------~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 360 --------------------PNHFIVGTEEGKVYKGCRKGYTPAP---------------------EVSYKGHSTFITHI 398 (555)
T ss_pred --------------------CceEEEEcCCcEEEEEeccCCcccc---------------------cccccccccccccC
Confidence 5689999999998873322211000 00112233556788
Q ss_pred CCeeEEEEcCCCCEEEEEeccceEEEEECC-CCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC--ce
Q 000454 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAA-DGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG--IP 617 (1491)
Q Consensus 541 ~~VtsVafSPDG~~LaSGs~DG~IrIWDl~-tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG--k~ 617 (1491)
+.|+++.++|-+..++..+.|.+|+||... ...++..+..+...|++++|||..+.+++++..||.|.|||+... .+
T Consensus 399 g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred cceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 999999999998877776679999999988 777888888888889999999988899999999999999999643 45
Q ss_pred EEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 618 IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 618 l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
+.....+....+.+.|++.|+.|++|+..|.+++|++...
T Consensus 479 v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 479 VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 6665555556778899999999999999999999999643
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.9e-16 Score=168.31 Aligned_cols=302 Identities=14% Similarity=0.165 Sum_probs=205.3
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeec-cCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000454 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 277 ~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~-gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVr 355 (1491)
+...+++|.+.|+++.|-.++. |.+|..-|.|++|++++...+..++ .|...|+.+.-.|++ .|.+-+.|+.+.
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d----~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND----SLDTQGRDPLLI 80 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc----chhhcCCCceEE
Confidence 4567889999999999988775 8899999999999999999888888 677899999999985 599999999999
Q ss_pred EEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-----CCC----EEEEecCCc-eEEEEeCCCCC
Q 000454 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-----NGT----VFVTGSSDT-LARVWNACKPN 425 (1491)
Q Consensus 356 IWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-----DG~----~LasGs~DG-~IrVWDl~t~~ 425 (1491)
+|++..+..+..-.+ .+.++.|.+ .++ .++.-+... .+.+-|.....
T Consensus 81 lw~ia~s~~i~i~Si-----------------------~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t 137 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSI-----------------------VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT 137 (323)
T ss_pred EEEccCcceEEEeee-----------------------eccccccccceeccCCCcchhheecCCcccchhhhhccCccc
Confidence 999987655433211 122222221 111 111110000 01111111000
Q ss_pred CCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCc
Q 000454 426 TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHP 505 (1491)
Q Consensus 426 ~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~ 505 (1491)
.. .-.-..-.+..+.+.+..+...- ...-.++.|-.+|.+.+||+.++....
T Consensus 138 qv-----~i~dd~~~~Klgsvmc~~~~~~c-----------------------~s~~lllaGyEsghvv~wd~S~~~~~~ 189 (323)
T KOG0322|consen 138 QV-----QIADDSERSKLGSVMCQDKDHAC-----------------------GSTFLLLAGYESGHVVIWDLSTGDKII 189 (323)
T ss_pred ee-----EccCchhccccCceeeeeccccc-----------------------cceEEEEEeccCCeEEEEEccCCceee
Confidence 00 00000011223344444432110 001267889999999999999753111
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC--CceE--EEEeCC
Q 000454 506 KAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD--GSLV--HSLTGH 581 (1491)
Q Consensus 506 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t--gkll--~tL~gH 581 (1491)
. + +...........|..+|.++.|.+.-..=++|+.+..+..|++.. +.+. ..+.-.
T Consensus 190 ~---~----------------~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk 250 (323)
T KOG0322|consen 190 Q---L----------------PQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK 250 (323)
T ss_pred c---c----------------ccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec
Confidence 0 0 011122334566888999999987666667788888899998753 3322 222323
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 582 TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 582 s~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
.-.|..+.+-| +++++||+|+|+.|+||...++.++..+..|...|.+++|+||...||+++.|++|.+|++
T Consensus 251 npGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 251 NPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 44578888999 8899999999999999999999999999999999999999999999999999999999986
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=165.53 Aligned_cols=279 Identities=20% Similarity=0.267 Sum_probs=198.4
Q ss_pred EEEccCCCCEEEEEEcCC-CCEEEEEeCC-------CeEEEEECCC---------CeEEEEEe-cCCCCeEEEEEcCCCC
Q 000454 237 KRVRGHRNAVYCAIFDRS-GRYVITGSDD-------RLVKIWSMET---------AYCLASCR-GHEGDITDLAVSSNNA 298 (1491)
Q Consensus 237 ~tL~GH~~~Vt~VaFSpD-G~~LATGS~D-------GtIrIWDl~T---------g~~l~tL~-gH~~~VtsLafSPDG~ 298 (1491)
+.|..|.+.|+.++-+|. .++|+|+-.+ -.+.||.+.. .+++..|. .+-+.|.||.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 467778999999999994 5566666431 2578998853 23444554 4566999999999999
Q ss_pred EEEEEECCCeEEEEECCCCCc-eeeec-----cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCC
Q 000454 299 LVASASNDCIIRVWRLPDGLP-ISVLR-----GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR 372 (1491)
Q Consensus 299 lLASGS~DGtIrVWDl~tgk~-i~~L~-----gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~ 372 (1491)
.||+-. |..|.+|++..+.. ++.+. +|....++-+|+|.-.. ..+....|+++..||+++..+...+
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg--nqv~tt~d~tl~~~D~RT~~~~~sI---- 209 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG--NQVATTSDSTLQFWDLRTMKKNNSI---- 209 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc--ceEEEeCCCcEEEEEccchhhhcch----
Confidence 998876 78999999988765 44332 35667888999994321 2344456899999999987765554
Q ss_pred CCCcccCCCCCCCCCCCCCCcceEEEEECCCCC-EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEE
Q 000454 373 PSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451 (1491)
Q Consensus 373 ~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVaf 451 (1491)
...|...|..+.|+|+.. +|++++.||.|+|||.+.. ..++..+.+|...|.+|.|
T Consensus 210 ---------------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--------k~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 210 ---------------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--------KFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred ---------------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------CccccccCCCceEEEEEEe
Confidence 245888899999999875 6788999999999999863 4578889999999999999
Q ss_pred ccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 000454 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 531 (1491)
Q Consensus 452 Spdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 531 (1491)
.|.- .+.+++|+.|..|.+|...+-........-...-............+...+
T Consensus 267 n~~h-------------------------dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg 321 (370)
T KOG1007|consen 267 NPEH-------------------------DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG 321 (370)
T ss_pred cCcc-------------------------ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc
Confidence 9864 468899999999999977653211110000000000000001111234456
Q ss_pred CceeccCCCCCeeEEEEcCCCCE-EEEEeccceEEEEECC
Q 000454 532 PRQRILPTPRGVNMIVWSLDNRF-VLAAIMDCRICVWNAA 570 (1491)
Q Consensus 532 ~~~~l~~h~~~VtsVafSPDG~~-LaSGs~DG~IrIWDl~ 570 (1491)
.+.++..|...|.+++||.-..+ +|+-+.||.+.|=.+.
T Consensus 322 ~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 322 QLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 67778889999999999987776 5567899999886653
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.1e-15 Score=166.83 Aligned_cols=301 Identities=13% Similarity=0.138 Sum_probs=219.2
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC------CCCceeeecc-CCCceEEEEecCCCCceEEEEEEeC
Q 000454 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP------DGLPISVLRG-HTAAVTAIAFSPRPGSVYQLLSSSD 350 (1491)
Q Consensus 278 l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~------tgk~i~~L~g-Hs~~VtsLaFSPdg~s~~~LaSgS~ 350 (1491)
.+.+.+|.+.|.+|.|+.++++||+|+.|..++||++. +.+++..... |...|.|++|.-.+. .|++|+.
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~---~~~SG~~ 125 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR---FLYSGER 125 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe---eEecCCC
Confidence 34567899999999999999999999999999999985 3466666543 458999999998876 8999999
Q ss_pred CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCC
Q 000454 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1491)
Q Consensus 351 DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1491)
+++|.+-|+.+.+.+..+.. ....+.|+.+..+|..+.|++.+.++.|.+||.+...
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~----- 182 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANE------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ----- 182 (609)
T ss_pred cceeEeeecccceeeeeecc------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCC-----
Confidence 99999999998876555421 2244579999999999999999999999999997532
Q ss_pred CCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccc
Q 000454 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
.+..+ ..+.........+.|.|.. +.+|++.+..|-+-+||++...... +
T Consensus 183 ~~~~~-~~~AN~~~~F~t~~F~P~~-------------------------P~Li~~~~~~~G~~~~D~R~~~~~~----~ 232 (609)
T KOG4227|consen 183 NPISL-VLPANSGKNFYTAEFHPET-------------------------PALILVNSETGGPNVFDRRMQARPV----Y 232 (609)
T ss_pred CCCce-eeecCCCccceeeeecCCC-------------------------ceeEEeccccCCCCceeeccccchH----H
Confidence 12222 2223334456677787764 4588999999999999998633110 0
Q ss_pred ccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCC-------C
Q 000454 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHT-------E 583 (1491)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs-------~ 583 (1491)
.... ...+......-..+.|+|.|..|++.-....-.+||+.+.++..--..|. .
T Consensus 233 ~~~~------------------~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~ 294 (609)
T KOG4227|consen 233 QRSM------------------FKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIK 294 (609)
T ss_pred hhhc------------------cccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeee
Confidence 0000 00011112223567899999999887655566678887655432222232 2
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCC----------C-------------ceEEEEeeCCcceEEEEEcCCCCEE
Q 000454 584 STYVLDVHPFNPRIAMSAGYDGKTIVWDIWE----------G-------------IPIRIYEISRFRLVDGKFSPDGASI 640 (1491)
Q Consensus 584 ~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t----------G-------------k~l~~l~~h~~~VtslafSPDG~~L 640 (1491)
.|.+++|. +.+-+++|+.+-.|++|.+.. | +.+..+.+|..-+..+.|+|...+|
T Consensus 295 T~KS~~F~--~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l 372 (609)
T KOG4227|consen 295 TIKSMTFI--DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLL 372 (609)
T ss_pred eeeeeeee--cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceE
Confidence 45667775 456688999999999998742 1 2345677888888999999999999
Q ss_pred EEEeCCCcEEEEEC
Q 000454 641 ILSDDVGQLYILNT 654 (1491)
Q Consensus 641 Asgs~DG~I~IWdl 654 (1491)
++.+-...++||.-
T Consensus 373 ~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 373 VSSGVENSFKLWSD 386 (609)
T ss_pred eccchhhheecccc
Confidence 99999999999974
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-15 Score=182.49 Aligned_cols=290 Identities=17% Similarity=0.273 Sum_probs=211.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC---CCCeEEEEEcC--CCCEEEEEECCCeEEEEEC-CCC
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGH---EGDITDLAVSS--NNALVASASNDCIIRVWRL-PDG 317 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH---~~~VtsLafSP--DG~lLASGS~DGtIrVWDl-~tg 317 (1491)
..-..+.|+|-...|+++.+.-.|+|||.+.++++..|..+ ...|+.+.+-. |..+|++|+.||.|+||+- .++
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 34566889998889999987889999999999998887643 45788888865 4569999999999999963 222
Q ss_pred ----CceeeeccC-------CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 318 ----LPISVLRGH-------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 318 ----k~i~~L~gH-------s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
+.+..+.+- .+.=.-+.|....+ +|+++|.-..|+|||+....+...+..
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G---~Ll~tGd~r~IRIWDa~~E~~~~diP~---------------- 1205 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG---HLLVTGDVRSIRIWDAHKEQVVADIPY---------------- 1205 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCC---eEEecCCeeEEEEEecccceeEeeccc----------------
Confidence 233222211 11123467777766 788888789999999987776555422
Q ss_pred CCCCCCcceEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCC--ceEEEEccCccccccccc
Q 000454 387 SAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND--VNYVQFSGCAVASRFSLA 463 (1491)
Q Consensus 387 s~~~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~--V~sVafSpdg~as~~s~~ 463 (1491)
.....|+++.-+- .|+.|++|..||.|++||.+... +...+.....|... |..+.+.+.|.
T Consensus 1206 ---~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~------~ds~v~~~R~h~~~~~Iv~~slq~~G~------- 1269 (1387)
T KOG1517|consen 1206 ---GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP------PDSLVCVYREHNDVEPIVHLSLQRQGL------- 1269 (1387)
T ss_pred ---CCCccceeecccccCCceEEEeecCCceEEeecccCC------ccccceeecccCCcccceeEEeecCCC-------
Confidence 1233455555433 57999999999999999997643 23567778888887 99999988762
Q ss_pred cCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC---C
Q 000454 464 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT---P 540 (1491)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h---~ 540 (1491)
..|++|+.+|.|++||++..... . ...+..| .
T Consensus 1270 ------------------~elvSgs~~G~I~~~DlR~~~~e--------------------------~-~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1270 ------------------GELVSGSQDGDIQLLDLRMSSKE--------------------------T-FLTIVAHWEYG 1304 (1387)
T ss_pred ------------------cceeeeccCCeEEEEecccCccc--------------------------c-cceeeeccccC
Confidence 37999999999999999962100 0 0001111 1
Q ss_pred CCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCC-------CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 541 RGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-------TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 541 ~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH-------s~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
..++++..+++...+|+|+. +.|+||++. |+.+..++.+ .+.+.|++||| -..++|+|+.|.+|.||...
T Consensus 1305 s~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred ccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecC
Confidence 24899999999999999988 999999985 5555444322 34679999999 66788889999999999886
Q ss_pred CCc
Q 000454 614 EGI 616 (1491)
Q Consensus 614 tGk 616 (1491)
.+.
T Consensus 1382 k~~ 1384 (1387)
T KOG1517|consen 1382 KPR 1384 (1387)
T ss_pred CcC
Confidence 543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-14 Score=175.42 Aligned_cols=285 Identities=16% Similarity=0.203 Sum_probs=199.0
Q ss_pred CCeEEEEECCCC-eEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCCc--eee----eccCCCceEEEEe
Q 000454 264 DRLVKIWSMETA-YCLASCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDGLP--ISV----LRGHTAAVTAIAF 335 (1491)
Q Consensus 264 DGtIrIWDl~Tg-~~l~tL~gH~~~VtsLafSP-DG~lLASGS~DGtIrVWDl~tgk~--i~~----L~gHs~~VtsLaF 335 (1491)
++.+.||++... .....+. -...|+|++|+| +..+||.|+.+|.|.+||+..+.. ... ...|..+|+.+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 358999999876 3334443 577899999999 567889999999999999987754 222 2368899999999
Q ss_pred cCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEEecCCc
Q 000454 336 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDT 414 (1491)
Q Consensus 336 SPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG~~LasGs~DG 414 (1491)
..+..+ .-|++++.||.|+.|+++.-........ ................++++.|.+ +-..|++|+..|
T Consensus 300 ~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~--------~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G 370 (555)
T KOG1587|consen 300 LQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLL--------LESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG 370 (555)
T ss_pred eccCCC-CceEEEecCCcEeeeeccccccchhhcc--------cccccccccccccccceeeEeeccCCCceEEEEcCCc
Confidence 887653 4699999999999998765443211110 000000111223456789999988 456899999999
Q ss_pred eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEE
Q 000454 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1491)
Q Consensus 415 ~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIr 494 (1491)
.|..-.-....... ....+....+..|.+.|+++.++|-+ +..|++++ |.+++
T Consensus 371 ~v~~~~r~g~~~~~-~~~~~~~~~~~~h~g~v~~v~~nPF~-------------------------~k~fls~g-DW~vr 423 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAP-EVSYKGHSTFITHIGPVYAVSRNPFY-------------------------PKNFLSVG-DWTVR 423 (555)
T ss_pred EEEEEeccCCcccc-cccccccccccccCcceEeeecCCCc-------------------------cceeeeec-cceeE
Confidence 98773332211110 01123344667889999999999854 34556655 99999
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC-EEEEEeccceEEEEECCC--
Q 000454 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVWNAAD-- 571 (1491)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSGs~DG~IrIWDl~t-- 571 (1491)
||..... ..++..+..+...|++++|||--. .++++..||.|.|||+..
T Consensus 424 iWs~~~~----------------------------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 424 IWSEDVI----------------------------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred eccccCC----------------------------CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 9975521 133444455666799999999764 566777899999999954
Q ss_pred CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000454 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1491)
Q Consensus 572 gkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t 614 (1491)
..++.+..-+....+.+.|++ .+++|+.|...|.|.+|++..
T Consensus 476 ~~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 476 EEPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCcccccccccccceeecCC-CCcEEEEecCCCcEEEEEcCc
Confidence 345555555556667777877 789999999999999999953
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-15 Score=167.30 Aligned_cols=286 Identities=13% Similarity=0.187 Sum_probs=196.2
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCCceeee--ccCC-Cce
Q 000454 256 RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSS--NNALVASASNDCIIRVWRLPDGLPISVL--RGHT-AAV 330 (1491)
Q Consensus 256 ~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSP--DG~lLASGS~DGtIrVWDl~tgk~i~~L--~gHs-~~V 330 (1491)
..+|++...|.|+|||..+|+.+..++++...+..+.|.. ....+.+|+.||+|++||+++......+ ..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999987 4568999999999999999887655444 4454 455
Q ss_pred EEEEecCCCCceEEEEEEe----CCCcEEEEccCCCCcc-ceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CC
Q 000454 331 TAIAFSPRPGSVYQLLSSS----DDGTCRIWDARYSQFS-PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NG 404 (1491)
Q Consensus 331 tsLaFSPdg~s~~~LaSgS----~DGtVrIWDl~tg~~~-~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG 404 (1491)
.+++..-... .+++|. .+-.|.+||++..+.. ..+ ...|...|+++.|+| +.
T Consensus 121 ~~ld~nck~~---ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~-------------------~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 121 ICLDLNCKKN---IIACGTELTRSDASVVLWDVRSEQQLLRQL-------------------NESHNDDVTQLRFHPSDP 178 (376)
T ss_pred eEeeccCcCC---eEEeccccccCceEEEEEEeccccchhhhh-------------------hhhccCcceeEEecCCCC
Confidence 6666654544 566654 3667999999987652 222 245889999999999 55
Q ss_pred CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeE
Q 000454 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1491)
Q Consensus 405 ~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~L 484 (1491)
++|++|+.||.|.|||+.... ....+.....|...|..+.|...+ .+.|
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~------EeDaL~~viN~~sSI~~igw~~~~-------------------------ykrI 227 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDN------EEDALLHVINHGSSIHLIGWLSKK-------------------------YKRI 227 (376)
T ss_pred CeEEeecccceEEeeecCCCc------chhhHHHhhcccceeeeeeeecCC-------------------------cceE
Confidence 799999999999999996531 122334445677789999998765 2579
Q ss_pred EEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec-cce
Q 000454 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM-DCR 563 (1491)
Q Consensus 485 aSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~-DG~ 563 (1491)
.+.+..++..+|++..+....... ...+ ...-.........-|.+.. .-++.++++++. -+.
T Consensus 228 ~clTH~Etf~~~ele~~~~~~~~~----~~~~------------~~~d~r~~~~~dY~I~~~~-~~~~~~~~l~g~~~n~ 290 (376)
T KOG1188|consen 228 MCLTHMETFAIYELEDGSEETWLE----NPDV------------SADDLRKEDNCDYVINEHS-PGDKDTCALAGTDSNK 290 (376)
T ss_pred EEEEccCceeEEEccCCChhhccc----Cccc------------hhhhHHhhhhhhheeeccc-CCCcceEEEeccccCc
Confidence 999999999999998754211110 0000 0000000001111122221 123344444433 455
Q ss_pred EEEEEC---CC---CceEEEEeC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 564 ICVWNA---AD---GSLVHSLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 564 IrIWDl---~t---gkll~tL~g-Hs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
..++-+ .+ .+.+..+.+ |...|.++.|.. .+.+++|||.||.+.+|..
T Consensus 291 ~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 291 GTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eeEEEeeecccccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceEEEEec
Confidence 554433 22 345566666 666778888865 6688999999999999986
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-14 Score=178.00 Aligned_cols=321 Identities=16% Similarity=0.198 Sum_probs=217.6
Q ss_pred cccceeEEEEccCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEcCCCCEEE
Q 000454 230 VQKMQNIKRVRGHRNAVYCAIFDRSG-RYVITGSDDRLVKIWSMET-------AYCLASCRGHEGDITDLAVSSNNALVA 301 (1491)
Q Consensus 230 v~t~k~v~tL~GH~~~Vt~VaFSpDG-~~LATGS~DGtIrIWDl~T-------g~~l~tL~gH~~~VtsLafSPDG~lLA 301 (1491)
-.++..+.+|..|...|..++.++.. .+++|||.||+|+||++.. .+...++..-...+.++.+.+.+..+|
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 45678899999999999999988754 9999999999999999853 233444544578899999999999999
Q ss_pred EEECCCeEEEEECCCC--C-----ceeee--ccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCC
Q 000454 302 SASNDCIIRVWRLPDG--L-----PISVL--RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR 372 (1491)
Q Consensus 302 SGS~DGtIrVWDl~tg--k-----~i~~L--~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~ 372 (1491)
.++.||.|++.++... . +.... ......|..-+|.....+ ..|+.+..-+.|..||++......++..
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S-~~lvy~T~~~~iv~~D~r~~~~~w~lk~-- 1191 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS-HVLVYATDLSRIVSWDTRMRHDAWRLKN-- 1191 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc-eeEEEEEeccceEEecchhhhhHHhhhc--
Confidence 9999999999998652 1 11111 122234445556555544 3788888889999999988766555532
Q ss_pred CCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceee-eecCCCCCceEEEE
Q 000454 373 PSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQF 451 (1491)
Q Consensus 373 ~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~-~l~gH~~~V~sVaf 451 (1491)
....+.|++++.+|.+.+++.|+..|.+.+||++-. .++. .-.++..++..+..
T Consensus 1192 ----------------~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---------~~i~sw~~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1192 ----------------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---------VPILSWEHPARAPIRHVWL 1246 (1431)
T ss_pred ----------------CccccceeEEEecCCceEEEEecCCceEEEEEeecC---------ceeecccCcccCCcceEEe
Confidence 335678999999999999999999999999999742 1222 22344567777777
Q ss_pred ccCccccccccccCCCCCCCccccccccCCCe-EEEEe-CCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCC
Q 000454 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDN-IVTCS-RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1491)
Q Consensus 452 Spdg~as~~s~~~~~~~~~~~~~~~~~~~~~~-LaSgS-~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~ 529 (1491)
+|... .... +.+++ ..+.|.+|++.++. .....|... ..+.+....+.
T Consensus 1247 ~~~~~-----------------------~~S~~vs~~~~~~nevs~wn~~~g~--~~~vl~~s~-----~~p~ls~~~Ps 1296 (1431)
T KOG1240|consen 1247 CPTYP-----------------------QESVSVSAGSSSNNEVSTWNMETGL--RQTVLWASD-----GAPILSYALPS 1296 (1431)
T ss_pred eccCC-----------------------CCceEEEecccCCCceeeeecccCc--ceEEEEcCC-----CCcchhhhccc
Confidence 76420 0023 33444 67889999999864 233333320 01111111111
Q ss_pred CCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceE----------------------------------
Q 000454 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV---------------------------------- 575 (1491)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll---------------------------------- 575 (1491)
. ....++.-.....++..-+.++++|+.|..|+.||.......
T Consensus 1297 ~---~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~ 1373 (1431)
T KOG1240|consen 1297 N---DARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFII 1373 (1431)
T ss_pred c---cCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhh
Confidence 1 000122222333445555678999999999999997532110
Q ss_pred --------------EEE--------eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 000454 576 --------------HSL--------TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 576 --------------~tL--------~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
..+ ..|..+|+++++......+|++++.||.|+||.
T Consensus 1374 ~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1374 YQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 136778899988876778999999999999993
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-15 Score=174.40 Aligned_cols=182 Identities=24% Similarity=0.370 Sum_probs=144.8
Q ss_pred ccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcC--CCCEEEEEEC
Q 000454 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSS--NNALVASASN 305 (1491)
Q Consensus 229 ~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~-gH~~~VtsLafSP--DG~lLASGS~ 305 (1491)
++..+.+-+.|.||++.|.|++|+.+|.+||+||+|-.|.|||.-..++++.+. ||.+.|.++.|-| +++++++|..
T Consensus 36 ~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg 115 (758)
T KOG1310|consen 36 WLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG 115 (758)
T ss_pred HHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccC
Confidence 344466667899999999999999999999999999999999999888888775 8999999999999 5669999999
Q ss_pred CCeEEEEECCC----------CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCC
Q 000454 306 DCIIRVWRLPD----------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1491)
Q Consensus 306 DGtIrVWDl~t----------gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~ 375 (1491)
|..|+|+|+.. ...+..+..|...|..|+-.|++. +.+.+++.||+|+-+|++.......-
T Consensus 116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--htfwsasEDGtirQyDiREph~c~p~------- 186 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--HTFWSASEDGTIRQYDIREPHVCNPD------- 186 (758)
T ss_pred cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC--ceEEEecCCcceeeecccCCccCCcc-------
Confidence 99999999974 234566778999999999999975 48999999999999999864321110
Q ss_pred cccCCCCCCCCCCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCC
Q 000454 376 AVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 376 ~~~g~~~~~~~s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~ 422 (1491)
+..........+.--...|+.++|. ..+||+|+.|-.+++||.+
T Consensus 187 ---~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 187 ---EDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ---ccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 0000000111122245789999995 5689999999999999964
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-14 Score=174.48 Aligned_cols=299 Identities=15% Similarity=0.160 Sum_probs=204.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccC---CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC
Q 000454 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGH---TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1491)
Q Consensus 286 ~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gH---s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg 362 (1491)
..-..+.|+|-...|+++...-.|+|||.+.++.+..|..+ ...|+.+.+..... ..+|++|+.||.|+||+--..
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D-~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQD-DALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccc-hhheeeeccCceEEEeccccc
Confidence 35667788998888999887779999999999988777643 35788998876543 238999999999999964322
Q ss_pred C-ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeee-c
Q 000454 363 Q-FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL-S 440 (1491)
Q Consensus 363 ~-~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l-~ 440 (1491)
. ....+. .+............... .-+.|.....+|+++|.-..|+|||+.+.. ....+ .
T Consensus 1144 ~~~~~eLV--------Taw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~---------~~~diP~ 1205 (1387)
T KOG1517|consen 1144 KWKKPELV--------TAWSSLSDQLPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ---------VVADIPY 1205 (1387)
T ss_pred ccCCceeE--------EeeccccccCccCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccce---------eEeeccc
Confidence 1 111110 01000000111111122 557787766677777768899999996521 22222 2
Q ss_pred CCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCC
Q 000454 441 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520 (1491)
Q Consensus 441 gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~ 520 (1491)
+....|+++.-.-. .++.|+.|-.||.|++||.+....
T Consensus 1206 ~s~t~vTaLS~~~~-------------------------~gn~i~AGfaDGsvRvyD~R~a~~----------------- 1243 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLV-------------------------HGNIIAAGFADGSVRVYDRRMAPP----------------- 1243 (1387)
T ss_pred CCCccceeeccccc-------------------------CCceEEEeecCCceEEeecccCCc-----------------
Confidence 22334444432211 147999999999999999885221
Q ss_pred CCCCCCCCCCCCceeccCCCCC--eeEEEEcCCCCE-EEEEeccceEEEEECCCCceE--EEEeCCC--C-CeEEEEEec
Q 000454 521 PPMPPQPPRGGPRQRILPTPRG--VNMIVWSLDNRF-VLAAIMDCRICVWNAADGSLV--HSLTGHT--E-STYVLDVHP 592 (1491)
Q Consensus 521 ~~~~~~~~~~~~~~~l~~h~~~--VtsVafSPDG~~-LaSGs~DG~IrIWDl~tgkll--~tL~gHs--~-~VtsLafSP 592 (1491)
...+.....|... |..+.+-+.|-- |++|+.+|.|++||++..... .++..|. + .++++..|+
T Consensus 1244 ---------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~ 1314 (1387)
T KOG1517|consen 1244 ---------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE 1314 (1387)
T ss_pred ---------cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc
Confidence 1233444556655 888889887655 999999999999999874222 2233343 3 589999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEeeC-------CcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 593 FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS-------RFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 593 dd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h-------~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
...++|+|+. +.|+||++ .|+.+..+... .+.+.|++|+|-.-+||+|..|..|.||....+
T Consensus 1315 -hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1315 -HAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred -CCCeeeecCc-ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 6788889888 99999999 67666655432 346789999999999999999999999987654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.7e-14 Score=156.42 Aligned_cols=365 Identities=14% Similarity=0.117 Sum_probs=228.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCCceeeeccC
Q 000454 248 CAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA-SNDCIIRVWRLPDGLPISVLRGH 326 (1491)
Q Consensus 248 ~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASG-S~DGtIrVWDl~tgk~i~~L~gH 326 (1491)
-+.|||+|++||+++.- .+.|-|..+.+.++.+.. -..|..|.|..|..+++++ ..++.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 36799999999999876 788889888766554432 4568888999988877665 55789999999988888888888
Q ss_pred CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCE
Q 000454 327 TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV 406 (1491)
Q Consensus 327 s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~ 406 (1491)
...+.+++|+|+|+ ..|.+...+-.|.+|.+.+.+..... . ....+..++|+|||++
T Consensus 91 ~agls~~~WSPdgr--hiL~tseF~lriTVWSL~t~~~~~~~---~------------------pK~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 91 QAGLSSISWSPDGR--HILLTSEFDLRITVWSLNTQKGYLLP---H------------------PKTNVKGYAFHPDGQF 147 (447)
T ss_pred CCcceeeeECCCcc--eEeeeecceeEEEEEEeccceeEEec---c------------------cccCceeEEECCCCce
Confidence 88999999999996 47888889999999999876543221 1 2334577888888888
Q ss_pred EEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCC--------CCCCccccccc
Q 000454 407 FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK--------EDSTPKFKNSW 478 (1491)
Q Consensus 407 LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~--------~~~~~~~~~~~ 478 (1491)
.+..+.......+.+.. -+....+..+.-.+-..+.+.|+|+|..... .+..- .....++..-.
T Consensus 148 ~ai~sRrDCkdyv~i~~------c~~W~ll~~f~~dT~DltgieWsPdg~~laV--wd~~Leykv~aYe~~lG~k~v~ws 219 (447)
T KOG4497|consen 148 CAILSRRDCKDYVQISS------CKAWILLKEFKLDTIDLTGIEWSPDGNWLAV--WDNVLEYKVYAYERGLGLKFVEWS 219 (447)
T ss_pred eeeeecccHHHHHHHHh------hHHHHHHHhcCCCcccccCceECCCCcEEEE--ecchhhheeeeeeeccceeEEEec
Confidence 77766432211111110 0112334444445556666777776532111 11000 00111111112
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCcccccc------------c---c-----ccccCCCCCCCCCCC-----------
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW------------T---Q-----AYHLKVPPPPMPPQP----------- 527 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~------------~---~-----~~~l~~~~~~~~~~~----------- 527 (1491)
.+++.|+.|+.|+.++|.+--+-+..+..... . . ...+..++.......
T Consensus 220 P~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~ 299 (447)
T KOG4497|consen 220 PCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQ 299 (447)
T ss_pred cccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhh
Confidence 23678999999999998543332221110000 0 0 000111111110000
Q ss_pred ------CCCCCceeccCCCCCeeEEEEcCCCCEEEEEec--cceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEE
Q 000454 528 ------PRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM--DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAM 599 (1491)
Q Consensus 528 ------~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~--DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLa 599 (1491)
....+.........++..++|++|..++++-.. -..+.|||++..++...+. ...+|....|+|..+++++
T Consensus 300 ~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~v 378 (447)
T KOG4497|consen 300 MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVV 378 (447)
T ss_pred hcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEE
Confidence 000111111222456888999999999998643 3579999998877665554 4567999999996666665
Q ss_pred EEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCc
Q 000454 600 SAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQ 648 (1491)
Q Consensus 600 SgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~ 648 (1491)
+.....+++|...-...+.. ......|..++|.-+|..|+..+.|..
T Consensus 379 -ctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 379 -CTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred -EcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 44456799999854344433 334468999999999999999888753
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-15 Score=171.85 Aligned_cols=315 Identities=17% Similarity=0.220 Sum_probs=233.1
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeec-cCCCceEEEEecCCCCceEEEEEEeCCCcE
Q 000454 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1491)
Q Consensus 276 ~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~-gHs~~VtsLaFSPdg~s~~~LaSgS~DGtV 354 (1491)
.+...|.+|.+.|..|.|+..|..|++|+.|..|.+||+..+++...+. +|...|....|.|.... ..|++++.||.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d-~ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGD-RTIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCC-cCceeccccCce
Confidence 4456788999999999999999999999999999999999998776664 79889988889987643 379999999999
Q ss_pred EEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCCCC
Q 000454 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1491)
Q Consensus 355 rIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~~~ 433 (1491)
++=.+........ ......|.+.|.-++.-|+. ..|.+++.|+.+.-+|++.... .
T Consensus 212 r~s~i~~t~~~e~-----------------t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p------a 268 (559)
T KOG1334|consen 212 RVSEILETGYVEN-----------------TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP------A 268 (559)
T ss_pred eeeeeccccceec-----------------ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCc------c
Confidence 9876643332221 11235588889999998865 5688899999999999876422 2
Q ss_pred ceeeeecCCCC---CceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccc
Q 000454 434 HEIDVLSGHEN---DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 434 ~~i~~l~gH~~---~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
..+.....+.. ....|+..|.. ...|++++.|-.+++||.+.-.........
T Consensus 269 ~~~~cr~~~~~~~v~L~~Ia~~P~n-------------------------t~~faVgG~dqf~RvYD~R~~~~e~~n~~~ 323 (559)
T KOG1334|consen 269 EKFVCREADEKERVGLYTIAVDPRN-------------------------TNEFAVGGSDQFARVYDQRRIDKEENNGVL 323 (559)
T ss_pred ceeeeeccCCccceeeeeEecCCCC-------------------------ccccccCChhhhhhhhcccchhhccccchh
Confidence 22223333333 45566666643 358999999999999998753311110000
Q ss_pred ccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC--C----------ceEE-E
Q 000454 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD--G----------SLVH-S 577 (1491)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t--g----------kll~-t 577 (1491)
....+..........|++++|+.++.-|+++..|-.|++|.-.- | ..+. .
T Consensus 324 -----------------~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~v 386 (559)
T KOG1334|consen 324 -----------------DKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRV 386 (559)
T ss_pred -----------------hhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchh
Confidence 00001111123445699999998888888888898999995432 3 2333 3
Q ss_pred EeCCCC--CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 578 LTGHTE--STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 578 L~gHs~--~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
++||.. .|..+-|---...|+++|+.-|.|.||+-.+++.++.+.+...-|.||.=+|--..||+++-|..|+||-..
T Consensus 387 YKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 387 YKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred hcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence 789975 467776632246799999999999999999999999999888788899999999999999999999999864
Q ss_pred C
Q 000454 656 Q 656 (1491)
Q Consensus 656 t 656 (1491)
+
T Consensus 467 ~ 467 (559)
T KOG1334|consen 467 T 467 (559)
T ss_pred c
Confidence 3
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-14 Score=160.04 Aligned_cols=227 Identities=22% Similarity=0.368 Sum_probs=168.1
Q ss_pred EEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC-------CceeeeccCCCceEEEEecCCCCceEEEEEEeCC
Q 000454 280 SCRGHEGDITDLAVSS-NNALVASASNDCIIRVWRLPDG-------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 351 (1491)
Q Consensus 280 tL~gH~~~VtsLafSP-DG~lLASGS~DGtIrVWDl~tg-------k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D 351 (1491)
.+.||.++|.+++|+| +...||+||.|.+|.||.+..+ +++..|.+|...|--|+|+|... +.|++++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--NVLlsag~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--NVLLSAGSD 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch--hhHhhccCC
Confidence 4569999999999999 5678999999999999998754 56778899999999999999865 489999999
Q ss_pred CcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCC
Q 000454 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431 (1491)
Q Consensus 352 GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~ 431 (1491)
.+|.+|++.+++.+..+ .|...|++++|+.||.+|++.+.|..|+|||.+++
T Consensus 154 n~v~iWnv~tgeali~l---------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~------- 205 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITL---------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG------- 205 (472)
T ss_pred ceEEEEeccCCceeeec---------------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCC-------
Confidence 99999999999866554 28889999999999999999999999999999874
Q ss_pred CCceeeeecCCCCC-ceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEE----eCCCeEEEEecCCCCCCcc
Q 000454 432 PNHEIDVLSGHEND-VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC----SRDGSAIIWIPRSRRSHPK 506 (1491)
Q Consensus 432 ~~~~i~~l~gH~~~-V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSg----S~DGtIrIWDl~s~k~~~~ 506 (1491)
..+....+|.+. -.-+.|..++ . +++. -.+..+-+||......
T Consensus 206 --~~v~e~~~heG~k~~Raifl~~g--------------------------~-i~tTGfsr~seRq~aLwdp~nl~e--- 253 (472)
T KOG0303|consen 206 --TVVSEGVAHEGAKPARAIFLASG--------------------------K-IFTTGFSRMSERQIALWDPNNLEE--- 253 (472)
T ss_pred --cEeeecccccCCCcceeEEeccC--------------------------c-eeeeccccccccceeccCcccccC---
Confidence 344445566652 2334444443 2 3333 3477899998875221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE-eccceEEEEECCCCce-EEEEeC--CC
Q 000454 507 AARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNAADGSL-VHSLTG--HT 582 (1491)
Q Consensus 507 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG-s~DG~IrIWDl~tgkl-l~tL~g--Hs 582 (1491)
...........+|..--|.+|...|..+ -.|+.|+.|.+..-.+ ++-|.. ..
T Consensus 254 ------------------------P~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 254 ------------------------PIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred ------------------------cceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 0112233455677777889998887654 4799999999876543 333321 12
Q ss_pred CCeEEEEEec
Q 000454 583 ESTYVLDVHP 592 (1491)
Q Consensus 583 ~~VtsLafSP 592 (1491)
.+-..+.|-|
T Consensus 310 epQRG~g~mP 319 (472)
T KOG0303|consen 310 EPQRGMGFMP 319 (472)
T ss_pred Cccccccccc
Confidence 2334555555
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.3e-13 Score=157.27 Aligned_cols=277 Identities=12% Similarity=0.124 Sum_probs=173.9
Q ss_pred EEEEECCCeEEEEECCC-CC--ceeeeccCCCceEEEEecCCCCceEEEEEE-eCCCcEEEEccCC-CCccceeecCCCC
Q 000454 300 VASASNDCIIRVWRLPD-GL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSS-SDDGTCRIWDARY-SQFSPRIYIPRPS 374 (1491)
Q Consensus 300 LASGS~DGtIrVWDl~t-gk--~i~~L~gHs~~VtsLaFSPdg~s~~~LaSg-S~DGtVrIWDl~t-g~~~~~i~~~~~~ 374 (1491)
+++...++.|.+|++.+ ++ .+..+. +.+....++|+|+++ +|+++ ..++.|.+|++.. +.+ .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~---~lyv~~~~~~~i~~~~~~~~g~l-~~~~~---- 75 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKR---HLYVGVRPEFRVLSYRIADDGAL-TFAAE---- 75 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCC---EEEEEECCCCcEEEEEECCCCce-EEeee----
Confidence 34446789999999964 33 344444 346678899999987 56554 4578899999863 322 11100
Q ss_pred CcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec-CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEcc
Q 000454 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 453 (1491)
Q Consensus 375 ~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs-~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSp 453 (1491)
......+..++|+|+|++|++++ .++.|.+|++.+.... ...+..+. +......++++|
T Consensus 76 --------------~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~-----~~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 76 --------------SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIP-----VAPIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred --------------ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC-----CCceeecc-CCCcccEeEeCC
Confidence 00122356899999999888765 4889999998532110 11122222 223456778888
Q ss_pred CccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000454 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1491)
Q Consensus 454 dg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (1491)
++ ...+++...++.|.+||+.+........ ...
T Consensus 136 ~g-------------------------~~l~v~~~~~~~v~v~d~~~~g~l~~~~----------------------~~~ 168 (330)
T PRK11028 136 DN-------------------------RTLWVPCLKEDRIRLFTLSDDGHLVAQE----------------------PAE 168 (330)
T ss_pred CC-------------------------CEEEEeeCCCCEEEEEEECCCCcccccC----------------------CCc
Confidence 76 1244666778999999997522100000 000
Q ss_pred eeccCCCCCeeEEEEcCCCCEEEEEec-cceEEEEECCC--Cc--eEEEEeCCC------CCeEEEEEecCCCcEEEEE-
Q 000454 534 QRILPTPRGVNMIVWSLDNRFVLAAIM-DCRICVWNAAD--GS--LVHSLTGHT------ESTYVLDVHPFNPRIAMSA- 601 (1491)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs~-DG~IrIWDl~t--gk--ll~tL~gHs------~~VtsLafSPdd~~lLaSg- 601 (1491)
.. .........++|+|+|++|+++.. ++.|.+|++.. ++ .+..+..+. .....+.|+| ++++|+++
T Consensus 169 ~~-~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~ 246 (330)
T PRK11028 169 VT-TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACD 246 (330)
T ss_pred ee-cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEec
Confidence 00 011234567899999999988876 89999999973 33 344443221 1234688999 55555555
Q ss_pred eCCCcEEEEeCCCCc----eEEEEeeCCcceEEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 000454 602 GYDGKTIVWDIWEGI----PIRIYEISRFRLVDGKFSPDGASIILSDD-VGQLYILNTG 655 (1491)
Q Consensus 602 S~DGtIrIWDl~tGk----~l~~l~~h~~~VtslafSPDG~~LAsgs~-DG~I~IWdl~ 655 (1491)
..++.|.+|++.... .+..+... .....+.|+|||++|+++.. ++.|.||++.
T Consensus 247 ~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 247 RTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 457899999996533 23333322 24457899999999998765 8999999874
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-13 Score=147.35 Aligned_cols=285 Identities=14% Similarity=0.189 Sum_probs=200.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCC---------C-CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000454 287 DITDLAVSSNNALVASASNDCIIRVWRLPD---------G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 287 ~VtsLafSPDG~lLASGS~DGtIrVWDl~t---------g-k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrI 356 (1491)
.|.+-+|+|.+++|++|..+|.|.|..+.+ | ..+...++|.++|+.++|..+ +|++++. |.|+-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~-----~Lls~gd-G~V~g 85 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD-----FLLSGGD-GLVYG 85 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh-----heeeccC-ceEEE
Confidence 456678999999999999999999998853 2 345556899999999999954 6777665 99999
Q ss_pred EccCCCCcc------ceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCC
Q 000454 357 WDARYSQFS------PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1491)
Q Consensus 357 WDl~tg~~~------~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1491)
|..+..... .....|. ......-..|+++...|..+-++.++.|+.++-||+++
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~-------------~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~------- 145 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPM-------------QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED------- 145 (325)
T ss_pred eeehhhhhhccchhhhhhcCcc-------------ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC-------
Confidence 987643321 1111111 11112334688999999877777777899999999987
Q ss_pred CCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccc
Q 000454 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
++....+.+|++.|.++.--.. ...+++|+.||++++||.++.+.......+
T Consensus 146 --G~i~r~~rGHtDYvH~vv~R~~--------------------------~~qilsG~EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 146 --GRIQREYRGHTDYVHSVVGRNA--------------------------NGQILSGAEDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred --CEEEEEEcCCcceeeeeeeccc--------------------------CcceeecCCCccEEEEeccccceeEEeccc
Confidence 5678899999999999987322 248999999999999999987643222211
Q ss_pred ccccccCCCCCCCCCCCCCCCCceeccCC-CCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEE
Q 000454 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPT-PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD 589 (1491)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h-~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLa 589 (1491)
.. ...+.++ ...|.+++. +..+|++|+ ...+.+|.+...++..++. -...|..+.
T Consensus 198 k~--------------------~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~ 253 (325)
T KOG0649|consen 198 KN--------------------PNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVD 253 (325)
T ss_pred cC--------------------hhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe-cccceeEee
Confidence 10 1112222 234666665 456888775 4579999999988888775 344577777
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 000454 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPD-GASIILSDDVGQLYILN 653 (1491)
Q Consensus 590 fSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPD-G~~LAsgs~DG~I~IWd 653 (1491)
|- ...++++|....|.-|.+ .|.+-......+...+...|+.. -++|-+++....+.|+.
T Consensus 254 F~---~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 254 FV---DDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ee---cceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 74 457778888889999998 67777777666666776666544 34455566667777663
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=170.43 Aligned_cols=266 Identities=20% Similarity=0.313 Sum_probs=191.0
Q ss_pred eeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEEC
Q 000454 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1491)
Q Consensus 322 ~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafS 401 (1491)
++..|...|+.++|.|... .|++++.||+|.+|++..... .......+...+.+|.++|.|+++.
T Consensus 289 tl~s~~d~ir~l~~~~sep---~lit~sed~~lk~WnLqk~~~------------s~~~~~epi~tfraH~gPVl~v~v~ 353 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP---VLITASEDGTLKLWNLQKAKK------------SAEKDVEPILTFRAHEGPVLCVVVP 353 (577)
T ss_pred eeecchhhhhhhhcCCCCC---eEEEeccccchhhhhhcccCC------------ccccceeeeEEEecccCceEEEEec
Confidence 5667899999999999887 899999999999999943111 0122333445667899999999999
Q ss_pred CCCCEEEEecCCceEEEEeCCCCCCC--CCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcccccccc
Q 000454 402 ANGTVFVTGSSDTLARVWNACKPNTD--DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 479 (1491)
Q Consensus 402 PDG~~LasGs~DG~IrVWDl~t~~~~--~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~ 479 (1491)
+++..+++|+.||+|+.|++. .+.. ....+......+.||.+.|+.+++++.
T Consensus 354 ~n~~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~------------------------- 407 (577)
T KOG0642|consen 354 SNGEHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST------------------------- 407 (577)
T ss_pred CCceEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeeccc-------------------------
Confidence 999999999999999999886 2222 122344566788999999999999976
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC-CEEEEE
Q 000454 480 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAA 558 (1491)
Q Consensus 480 ~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG-~~LaSG 558 (1491)
+++|++|+.||++++|........ .+. .........++.+-... .+.++.
T Consensus 408 -~~~Llscs~DgTvr~w~~~~~~~~----~f~------------------------~~~e~g~Plsvd~~ss~~a~~~~s 458 (577)
T KOG0642|consen 408 -KDRLLSCSSDGTVRLWEPTEESPC----TFG------------------------EPKEHGYPLSVDRTSSRPAHSLAS 458 (577)
T ss_pred -ccceeeecCCceEEeeccCCcCcc----ccC------------------------CccccCCcceEeeccchhHhhhhh
Confidence 368999999999999988753310 000 00001112223332211 112222
Q ss_pred eccceEEEEECCCCceEEEEeCC-------CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEE
Q 000454 559 IMDCRICVWNAADGSLVHSLTGH-------TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG 631 (1491)
Q Consensus 559 s~DG~IrIWDl~tgkll~tL~gH-------s~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~Vtsl 631 (1491)
..-+.--++++..+..+..+..- ...+..+.++| +..+.+++..|+.|+++|..+|.++.....|...|+++
T Consensus 459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsl 537 (577)
T KOG0642|consen 459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSL 537 (577)
T ss_pred cccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceecce
Confidence 22222333444444444443211 13467788999 55778899999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCc
Q 000454 632 KFSPDGASIILSDDVGQLYILNTGQGE 658 (1491)
Q Consensus 632 afSPDG~~LAsgs~DG~I~IWdl~tG~ 658 (1491)
++.|+|-+|++++.||.|.+|.+....
T Consensus 538 ai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 538 AIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred eecCCCceEEeecCCceeehhhccchh
Confidence 999999999999999999999985543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-12 Score=152.52 Aligned_cols=284 Identities=13% Similarity=0.157 Sum_probs=172.8
Q ss_pred EEEeCCCeEEEEECCC-Ce--EEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECC-CCCc--eeeeccCCCceE
Q 000454 259 ITGSDDRLVKIWSMET-AY--CLASCRGHEGDITDLAVSSNNALVASAS-NDCIIRVWRLP-DGLP--ISVLRGHTAAVT 331 (1491)
Q Consensus 259 ATGS~DGtIrIWDl~T-g~--~l~tL~gH~~~VtsLafSPDG~lLASGS-~DGtIrVWDl~-tgk~--i~~L~gHs~~Vt 331 (1491)
++...++.|.+|++.+ ++ .+..+. +.+....++|+|++++|++++ .++.|.+|++. ++.. +.... ..+...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 4446789999999964 43 445554 346678899999999887765 47889999986 3432 22222 234567
Q ss_pred EEEecCCCCceEEEEEEe-CCCcEEEEccCCCC-ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEE
Q 000454 332 AIAFSPRPGSVYQLLSSS-DDGTCRIWDARYSQ-FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409 (1491)
Q Consensus 332 sLaFSPdg~s~~~LaSgS-~DGtVrIWDl~tg~-~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~Las 409 (1491)
.++|+|+++ +|++++ .++.|.+|++.+.. ....+.. ..+...+.+++|+|+|+++++
T Consensus 84 ~i~~~~~g~---~l~v~~~~~~~v~v~~~~~~g~~~~~~~~------------------~~~~~~~~~~~~~p~g~~l~v 142 (330)
T PRK11028 84 HISTDHQGR---FLFSASYNANCVSVSPLDKDGIPVAPIQI------------------IEGLEGCHSANIDPDNRTLWV 142 (330)
T ss_pred EEEECCCCC---EEEEEEcCCCeEEEEEECCCCCCCCceee------------------ccCCCcccEeEeCCCCCEEEE
Confidence 899999997 566555 58899999986432 1111100 011234677889999988865
Q ss_pred e-cCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEe
Q 000454 410 G-SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 488 (1491)
Q Consensus 410 G-s~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS 488 (1491)
+ ..++.|.+||+.+..... ........ .. .......+.|+|++ .+++++.
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~-~~~~~~~~-~~-~g~~p~~~~~~pdg--------------------------~~lyv~~ 193 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLV-AQEPAEVT-TV-EGAGPRHMVFHPNQ--------------------------QYAYCVN 193 (330)
T ss_pred eeCCCCEEEEEEECCCCccc-ccCCCcee-cC-CCCCCceEEECCCC--------------------------CEEEEEe
Confidence 4 456999999996521110 00000111 11 12345678999886 4665554
Q ss_pred -CCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec-cceEEE
Q 000454 489 -RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM-DCRICV 566 (1491)
Q Consensus 489 -~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~-DG~IrI 566 (1491)
.+++|.+|++...... . ........ .+. -..+......+.|+|+|++|+++.. ++.|.+
T Consensus 194 ~~~~~v~v~~~~~~~~~--~-~~~~~~~~-~p~---------------~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v 254 (330)
T PRK11028 194 ELNSSVDVWQLKDPHGE--I-ECVQTLDM-MPA---------------DFSDTRWAADIHITPDGRHLYACDRTASLISV 254 (330)
T ss_pred cCCCEEEEEEEeCCCCC--E-EEEEEEec-CCC---------------cCCCCccceeEEECCCCCEEEEecCCCCeEEE
Confidence 4999999999742100 0 00000000 000 0001122346889999999999854 789999
Q ss_pred EECCCCceEEEEeCCC---CCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 567 WNAADGSLVHSLTGHT---ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 567 WDl~tgkll~tL~gHs---~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
|++........+.++. .....+.|+|++..++++...+++|.||++.
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 255 FSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9986533222222221 2345789999655555555569999999874
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=151.44 Aligned_cols=247 Identities=19% Similarity=0.295 Sum_probs=183.3
Q ss_pred cCCCCEEEEEEcCCC-----CEEEEEeCCCeEEEEECCC--CeE--EEEE-----ecCCCCeEEEEEcC-CCCEEEEEEC
Q 000454 241 GHRNAVYCAIFDRSG-----RYVITGSDDRLVKIWSMET--AYC--LASC-----RGHEGDITDLAVSS-NNALVASASN 305 (1491)
Q Consensus 241 GH~~~Vt~VaFSpDG-----~~LATGS~DGtIrIWDl~T--g~~--l~tL-----~gH~~~VtsLafSP-DG~lLASGS~ 305 (1491)
.|.-+++.+.|.|+. ++|||.++ .++||.+.. .+. ...+ ..+.+++++..|+. +-++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 588899999999986 46777654 699999873 221 1112 24678999999987 6779999999
Q ss_pred CCeEEEEECCCCCc---eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCC
Q 000454 306 DCIIRVWRLPDGLP---ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1491)
Q Consensus 306 DGtIrVWDl~tgk~---i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~ 382 (1491)
|-+..|||++++.. ...+-.|...|+.|+|...+. ..|++++.||.|++||++...-...++-..
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~--~~FASvgaDGSvRmFDLR~leHSTIIYE~p---------- 239 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSR--DVFASVGADGSVRMFDLRSLEHSTIIYEDP---------- 239 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCcc--ceEEEecCCCcEEEEEecccccceEEecCC----------
Confidence 99999999998743 456778999999999999654 489999999999999999776554443211
Q ss_pred CCCCCCCCCCcceEEEEECC-CCCEEEEecCC-ceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccc
Q 000454 383 APSSSAGPQSHQIFCCAFNA-NGTVFVTGSSD-TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 383 ~~~~s~~~h~~~V~slafSP-DG~~LasGs~D-G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
........++|++ |-+++|+-..| ..|.|.|++. |...+..+.+|.+.|++|+|.|..
T Consensus 240 -------~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~--------P~tpva~L~~H~a~VNgIaWaPhS----- 299 (364)
T KOG0290|consen 240 -------SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV--------PCTPVARLRNHQASVNGIAWAPHS----- 299 (364)
T ss_pred -------CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC--------CCcceehhhcCcccccceEecCCC-----
Confidence 1145678899988 45677775554 4699999985 356788999999999999999975
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 540 (1491)
...|++++.|..+.|||+...-. .....++.... ..
T Consensus 300 --------------------~~hictaGDD~qaliWDl~q~~~-----------------------~~~~dPilay~-a~ 335 (364)
T KOG0290|consen 300 --------------------SSHICTAGDDCQALIWDLQQMPR-----------------------ENGEDPILAYT-AG 335 (364)
T ss_pred --------------------CceeeecCCcceEEEEecccccc-----------------------cCCCCchhhhh-cc
Confidence 46899999999999999985210 00111222222 45
Q ss_pred CCeeEEEEcC-CCCEEEEEeccceEEE
Q 000454 541 RGVNMIVWSL-DNRFVLAAIMDCRICV 566 (1491)
Q Consensus 541 ~~VtsVafSP-DG~~LaSGs~DG~IrI 566 (1491)
..|+.+.|++ .+.+|+++.. .++.|
T Consensus 336 ~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 336 GEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ceeeeeeecccCCCEEEEEec-CeeeE
Confidence 6799999995 5667777653 34433
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6e-14 Score=159.59 Aligned_cols=210 Identities=19% Similarity=0.268 Sum_probs=160.2
Q ss_pred EEEccCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------eEEEEEecCCCCeEEEEEcCC-CCEEEEEECCC
Q 000454 237 KRVRGHRNAVYCAIFDR-SGRYVITGSDDRLVKIWSMETA-------YCLASCRGHEGDITDLAVSSN-NALVASASNDC 307 (1491)
Q Consensus 237 ~tL~GH~~~Vt~VaFSp-DG~~LATGS~DGtIrIWDl~Tg-------~~l~tL~gH~~~VtsLafSPD-G~lLASGS~DG 307 (1491)
-.+.||+++|..++|+| +...||+||.|.+|.||.+..+ +.+..|.||...|--|+|+|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 35789999999999999 5678999999999999998654 346778899999999999995 56899999999
Q ss_pred eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s 387 (1491)
+|.||++.+|+.+..+. |...|+++.|+-+|. +|++++.|..|+|||.++++.+..-.
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs---~l~TtckDKkvRv~dpr~~~~v~e~~------------------ 212 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS---LLCTTCKDKKVRVIDPRRGTVVSEGV------------------ 212 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCc---eeeeecccceeEEEcCCCCcEeeecc------------------
Confidence 99999999999988888 999999999999998 99999999999999999998765531
Q ss_pred CCCCCcceEEEEECCCCCEEEEec---CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccccccc
Q 000454 388 AGPQSHQIFCCAFNANGTVFVTGS---SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1491)
Q Consensus 388 ~~~h~~~V~slafSPDG~~LasGs---~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~ 464 (1491)
...+.....+.|-.+|.++.+|. .+..+.+||...... + -.+..+.. ...|.---|.++.
T Consensus 213 -~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e-----P-~~~~elDt-SnGvl~PFyD~dt--------- 275 (472)
T KOG0303|consen 213 -AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEE-----P-IALQELDT-SNGVLLPFYDPDT--------- 275 (472)
T ss_pred -cccCCCcceeEEeccCceeeeccccccccceeccCcccccC-----c-ceeEEecc-CCceEEeeecCCC---------
Confidence 11233445667888888666654 367899999864221 1 11122221 2233333334432
Q ss_pred CCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCC
Q 000454 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 501 (1491)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~ 501 (1491)
.-..++|-.|+.|+.|.+...
T Consensus 276 ----------------~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 276 ----------------SIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ----------------CEEEEEecCCcceEEEEecCC
Confidence 124567788999999988763
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-13 Score=147.88 Aligned_cols=300 Identities=17% Similarity=0.220 Sum_probs=205.7
Q ss_pred EEEEecCCCCeEEEEEcC--C-CCEEEEEEC----CCeEEEEECC--CCCceeee-ccCCCceEEEEecCCCC--ceEEE
Q 000454 278 LASCRGHEGDITDLAVSS--N-NALVASASN----DCIIRVWRLP--DGLPISVL-RGHTAAVTAIAFSPRPG--SVYQL 345 (1491)
Q Consensus 278 l~tL~gH~~~VtsLafSP--D-G~lLASGS~----DGtIrVWDl~--tgk~i~~L-~gHs~~VtsLaFSPdg~--s~~~L 345 (1491)
+..+.. .-.+.++.|+. + .-+||.|+. .+.|.|-.+. +++.+..- ..|.-+++.+.|.|+.. .+.+|
T Consensus 38 iy~Y~a-p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 38 IYTYNA-PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred EEEecC-CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence 344433 34677888873 2 347888865 3556665543 34333221 25889999999999873 23345
Q ss_pred EEEeCCCcEEEEccCCCC--ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEEecCCceEEEEeCC
Q 000454 346 LSSSDDGTCRIWDARYSQ--FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 346 aSgS~DGtVrIWDl~tg~--~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~ 422 (1491)
++++ ..+++|.+.... ......+ .......+..+++++.|+. +-++|.+.+-|.+..|||+.
T Consensus 117 ATs~--D~LRlWri~~ee~~~~~~~~L-------------~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie 181 (364)
T KOG0290|consen 117 ATSS--DFLRLWRIGDEESRVELQSVL-------------NNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIE 181 (364)
T ss_pred hccc--CeEEEEeccCcCCceehhhhh-------------ccCcccccCCcccccccccCCcceeEeecccCeEEEEEEe
Confidence 4444 359999987432 1111111 0111234566899999987 67899999999999999997
Q ss_pred CCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCC
Q 000454 423 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1491)
Q Consensus 423 t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k 502 (1491)
++ ........+-+|...|..|+|...+ .+.|++++.||.+++||++...
T Consensus 182 ~~------~~~~vkTQLIAHDKEV~DIaf~~~s-------------------------~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 182 TG------VSGTVKTQLIAHDKEVYDIAFLKGS-------------------------RDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred ec------cccceeeEEEecCcceeEEEeccCc-------------------------cceEEEecCCCcEEEEEecccc
Confidence 64 2244566788999999999999754 3689999999999999999633
Q ss_pred CCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC-CEEEEEec-cceEEEEECCC-CceEEEEe
Q 000454 503 SHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN-RFVLAAIM-DCRICVWNAAD-GSLVHSLT 579 (1491)
Q Consensus 503 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG-~~LaSGs~-DG~IrIWDl~t-gkll~tL~ 579 (1491)
..... |+ -.....+...++|++.. +++|+-.. ...|.|.|++. ..++..|.
T Consensus 231 HSTII------YE--------------------~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~ 284 (364)
T KOG0290|consen 231 HSTII------YE--------------------DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR 284 (364)
T ss_pred cceEE------ec--------------------CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh
Confidence 11110 00 00113445667887754 45666443 45799999986 56788999
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC------ceEEEEeeCCcceEEEEEcC-CCCEEEEEeCCCcEEEE
Q 000454 580 GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG------IPIRIYEISRFRLVDGKFSP-DGASIILSDDVGQLYIL 652 (1491)
Q Consensus 580 gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG------k~l~~l~~h~~~VtslafSP-DG~~LAsgs~DG~I~IW 652 (1491)
+|.+.|++|+|.|.....|+|||.|..+.|||+... .++..+. ..+.|..+.|++ .+.+|+++.. ..+.|.
T Consensus 285 ~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kkleiL 362 (364)
T KOG0290|consen 285 NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEIL 362 (364)
T ss_pred cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeEE
Confidence 999999999999998999999999999999999653 2333444 456899999996 5677887765 444443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=158.75 Aligned_cols=264 Identities=14% Similarity=0.178 Sum_probs=186.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEE-cC-------CCCEEEEEECCCeEEEE
Q 000454 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAV-SS-------NNALVASASNDCIIRVW 312 (1491)
Q Consensus 241 GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLaf-SP-------DG~lLASGS~DGtIrVW 312 (1491)
.|...|.|+.|+.+...+.+++++..++-|++.+. ....+.-....|....+ -+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 36677789999998877777655555555555432 22222211222211111 11 23478888999999998
Q ss_pred ECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 313 Dl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
+ ..++.-..+..|.+.|.+-.|+|+|. -|++++.||.|++|.-. |-+..++ ....
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGt---gLlt~GEDG~iKiWSrs-GMLRStl--------------------~Q~~ 145 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGA---GLLTAGEDGVIKIWSRS-GMLRSTV--------------------VQNE 145 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCc---eeeeecCCceEEEEecc-chHHHHH--------------------hhcC
Confidence 8 57888888899999999999999998 89999999999999843 3322222 2246
Q ss_pred cceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCc
Q 000454 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1491)
Q Consensus 393 ~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1491)
..|.|++|.|+..-++.+- .+.+.|=.+. +...+....+|.+-|.++.|++..
T Consensus 146 ~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~---------~n~k~i~WkAHDGiiL~~~W~~~s----------------- 198 (737)
T KOG1524|consen 146 ESIRCARWAPNSNSIVFCQ-GGHISIKPLA---------ANSKIIRWRAHDGLVLSLSWSTQS----------------- 198 (737)
T ss_pred ceeEEEEECCCCCceEEec-CCeEEEeecc---------cccceeEEeccCcEEEEeecCccc-----------------
Confidence 6799999999887555443 3455554442 245677889999999999999874
Q ss_pred cccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC
Q 000454 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1491)
Q Consensus 473 ~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 552 (1491)
+.+++|+.|-..+|||-.. ..+.....|..+|++++|.|+
T Consensus 199 ---------~lI~sgGED~kfKvWD~~G------------------------------~~Lf~S~~~ey~ITSva~npd- 238 (737)
T KOG1524|consen 199 ---------NIIASGGEDFRFKIWDAQG------------------------------ANLFTSAAEEYAITSVAFNPE- 238 (737)
T ss_pred ---------cceeecCCceeEEeecccC------------------------------cccccCChhccceeeeeeccc-
Confidence 7999999999999998763 334445668889999999999
Q ss_pred CEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000454 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1491)
Q Consensus 553 ~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIW 610 (1491)
+.++.++.+ ++++ -....+.|..++|++ ++..++.|...|.+.+=
T Consensus 239 ~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 239 KDYLLWSYN-TARF-----------SSPRVGSIFNLSWSA-DGTQATCGTSTGQLIVA 283 (737)
T ss_pred cceeeeeee-eeee-----------cCCCccceEEEEEcC-CCceeeccccCceEEEe
Confidence 666666543 3441 123457799999999 67777777777776543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-12 Score=153.00 Aligned_cols=338 Identities=15% Similarity=0.110 Sum_probs=205.7
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecC
Q 000454 258 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337 (1491)
Q Consensus 258 LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSP 337 (1491)
+++-..++.|.|.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+..+... ....++++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC
Confidence 356667899999999999999999865544456789999999999999999999999999999998754 4568899999
Q ss_pred CCCceEEEE-EEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEE-ecCCce
Q 000454 338 RPGSVYQLL-SSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT-GSSDTL 415 (1491)
Q Consensus 338 dg~s~~~La-SgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~Las-Gs~DG~ 415 (1491)
|++ +++ +....+.|.++|..+.+.+..+...... .......+..+..+|....+++ .-..+.
T Consensus 88 DG~---~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~-------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 88 DGK---YVYVANYEPGTVSVIDAETLEPVKTIPTGGMP-------------VDGPESRVAAIVASPGRPEFVVNLKDTGE 151 (369)
T ss_dssp TTT---EEEEEEEETTEEEEEETTT--EEEEEE--EE--------------TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred CCC---EEEEEecCCCceeEeccccccceeeccccccc-------------ccccCCCceeEEecCCCCEEEEEEccCCe
Confidence 998 555 4557899999999999888777431100 0013456778888888875554 445588
Q ss_pred EEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeE-EEEeCCCeEE
Q 000454 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI-VTCSRDGSAI 494 (1491)
Q Consensus 416 IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~L-aSgS~DGtIr 494 (1491)
|.+.|.... ..................|.|++ .++ ++......|.
T Consensus 152 I~vVdy~d~--------~~~~~~~i~~g~~~~D~~~dpdg--------------------------ry~~va~~~sn~i~ 197 (369)
T PF02239_consen 152 IWVVDYSDP--------KNLKVTTIKVGRFPHDGGFDPDG--------------------------RYFLVAANGSNKIA 197 (369)
T ss_dssp EEEEETTTS--------SCEEEEEEE--TTEEEEEE-TTS--------------------------SEEEEEEGGGTEEE
T ss_pred EEEEEeccc--------cccceeeecccccccccccCccc--------------------------ceeeecccccceeE
Confidence 888887542 11121222233455677888875 344 4456677888
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCce
Q 000454 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 574 (1491)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkl 574 (1491)
++|..+.+...... ... .+...+... ..|...=.--+....+.+.++.-....+.+|+..+++.
T Consensus 198 viD~~~~k~v~~i~---------~g~------~p~~~~~~~-~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv 261 (369)
T PF02239_consen 198 VIDTKTGKLVALID---------TGK------KPHPGPGAN-FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV 261 (369)
T ss_dssp EEETTTTEEEEEEE----------SS------SBEETTEEE-EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred EEeeccceEEEEee---------ccc------ccccccccc-ccCCCcceEEeeccccceecccccCCccccchhhcCeE
Confidence 99988644221100 000 000001111 11222100111223344444444445677899999999
Q ss_pred EEEEeCCCCCeEEEEEecCCCcEEEEE----eCCCcEEEEeCCCCceEEEEeeCCc-ceEEEEEcCCCCEEEEE--eCCC
Q 000454 575 VHSLTGHTESTYVLDVHPFNPRIAMSA----GYDGKTIVWDIWEGIPIRIYEISRF-RLVDGKFSPDGASIILS--DDVG 647 (1491)
Q Consensus 575 l~tL~gHs~~VtsLafSPdd~~lLaSg----S~DGtIrIWDl~tGk~l~~l~~h~~-~VtslafSPDG~~LAsg--s~DG 647 (1491)
++++....++ .-+..||+ ++++... ...+.|.|+|..+.+.+..+....+ .+..+.|++||+++.++ ..+|
T Consensus 262 v~~I~~~G~g-lFi~thP~-s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~ 339 (369)
T PF02239_consen 262 VKTIPTQGGG-LFIKTHPD-SRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG 339 (369)
T ss_dssp EEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT
T ss_pred EEEEECCCCc-ceeecCCC-CccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC
Confidence 9999987777 77888995 4555444 5568999999999988887753332 58899999999987765 3445
Q ss_pred cEEEEECCCCccccccc
Q 000454 648 QLYILNTGQGESQKDAK 664 (1491)
Q Consensus 648 ~I~IWdl~tG~~~~~~~ 664 (1491)
.|.|||..+.+..+.++
T Consensus 340 ~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 340 AIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCcEEEEEEE
Confidence 79999999998876654
|
... |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-12 Score=145.25 Aligned_cols=258 Identities=18% Similarity=0.218 Sum_probs=187.8
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000454 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 239 L~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg---~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~ 315 (1491)
+.--..+|+|.||++|+..+|.+.....|.||..... +..+++..|...|+.|+|+|..+.|++|+.|..-+||...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 3334579999999999999999999999999988654 5788999999999999999999999999999999999984
Q ss_pred CC---CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 316 DG---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 316 tg---k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
.+ ++..++..+...+++|.|+|.++ .|++|+.-..|.||-++...-- ........+..
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~en---kFAVgSgar~isVcy~E~ENdW----------------WVsKhikkPir 146 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKEN---KFAVGSGARLISVCYYEQENDW----------------WVSKHIKKPIR 146 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCc---eEEeccCccEEEEEEEecccce----------------ehhhhhCCccc
Confidence 33 56666777999999999999987 8999999999999876543211 11112234567
Q ss_pred cceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCc
Q 000454 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1491)
Q Consensus 393 ~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1491)
..|.+++|+|++-+|++|+.|+.++||..-- +.+..-. .|.
T Consensus 147 Stv~sldWhpnnVLlaaGs~D~k~rVfSayI----------K~Vdekp-----------ap~------------------ 187 (361)
T KOG1523|consen 147 STVTSLDWHPNNVLLAAGSTDGKCRVFSAYI----------KGVDEKP-----------APT------------------ 187 (361)
T ss_pred cceeeeeccCCcceecccccCcceeEEEEee----------eccccCC-----------CCC------------------
Confidence 7899999999999999999999999997621 1110000 000
Q ss_pred cccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCC
Q 000454 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1491)
Q Consensus 473 ~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG 552 (1491)
-|+-+ .+.+..+.......+.|..+.|+|+|
T Consensus 188 ----------------------pWgsk---------------------------~PFG~lm~E~~~~ggwvh~v~fs~sG 218 (361)
T KOG1523|consen 188 ----------------------PWGSK---------------------------MPFGQLMSEASSSGGWVHGVLFSPSG 218 (361)
T ss_pred ----------------------CCccC---------------------------CcHHHHHHhhccCCCceeeeEeCCCC
Confidence 01100 00111122222456779999999999
Q ss_pred CEEEEEeccceEEEEECCCCc-eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC
Q 000454 553 RFVLAAIMDCRICVWNAADGS-LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG 605 (1491)
Q Consensus 553 ~~LaSGs~DG~IrIWDl~tgk-ll~tL~gHs~~VtsLafSPdd~~lLaSgS~DG 605 (1491)
..|+-.+.|..+.+-|..... .+..+....-+..++.|-. ...++.+++|.
T Consensus 219 ~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is--e~~vv~ag~~c 270 (361)
T KOG1523|consen 219 NRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS--ENSVVAAGYDC 270 (361)
T ss_pred CEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeec--CCceeecCCCC
Confidence 999999999999999987664 3444433335666676654 33444566663
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-12 Score=139.59 Aligned_cols=279 Identities=15% Similarity=0.247 Sum_probs=192.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------C-eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMET---------A-YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T---------g-~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWD 313 (1491)
..|.+-+++|.+++|+.|..+|+|-+..+.. | ..+...++|.++|..++|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 4677889999999999999999999999853 2 3345568999999999998 44677775 59999998
Q ss_pred CCCCCc------eeeec--cC-----CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCC
Q 000454 314 LPDGLP------ISVLR--GH-----TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 314 l~tgk~------i~~L~--gH-----s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
+..... +..+. -| --.|+++-..|..+ -++.++.|+.+..||+++|+....+
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en---Si~~AgGD~~~y~~dlE~G~i~r~~------------ 152 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN---SILFAGGDGVIYQVDLEDGRIQREY------------ 152 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC---cEEEecCCeEEEEEEecCCEEEEEE------------
Confidence 754321 11111 12 23688999999876 5777779999999999999877666
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCC-CceEEEEccCccccc
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN-DVNYVQFSGCAVASR 459 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~-~V~sVafSpdg~as~ 459 (1491)
.+|...|.+++--.....+++|+.||+++|||.++.+......+.+....+..|-+ .|-+++.+.
T Consensus 153 --------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e------ 218 (325)
T KOG0649|consen 153 --------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE------ 218 (325)
T ss_pred --------cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC------
Confidence 56999999999855556789999999999999998766544444333333444433 455665543
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1491)
+.+++| ....+.+|.+++.. ...+.+.
T Consensus 219 ----------------------dWlvCG-gGp~lslwhLrsse------------------------------~t~vfpi 245 (325)
T KOG0649|consen 219 ----------------------DWLVCG-GGPKLSLWHLRSSE------------------------------STCVFPI 245 (325)
T ss_pred ----------------------ceEEec-CCCceeEEeccCCC------------------------------ceEEEec
Confidence 355554 45678999998633 1223344
Q ss_pred CCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIW 610 (1491)
...+..+.|.. ..+++++....|.-|.+ +|.+-..........+...|+..--+++..++..+.+.|+
T Consensus 246 pa~v~~v~F~~--d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 246 PARVHLVDFVD--DCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ccceeEeeeec--ceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 55667777754 46777877788888886 4555555554444455555554222455556666666554
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=161.73 Aligned_cols=233 Identities=17% Similarity=0.135 Sum_probs=160.2
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCCc--eeeeccCCCceEEEEecCC
Q 000454 264 DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLP--ISVLRGHTAAVTAIAFSPR 338 (1491)
Q Consensus 264 DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D---GtIrVWDl~tgk~--i~~L~gHs~~VtsLaFSPd 338 (1491)
+..|.|||.... ....+..|...|.+++|+|||+.||.++.+ ..|++||+.++.. +..+.+ ....++|+||
T Consensus 183 ~~~i~i~d~dg~-~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGF-NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCC-CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCC
Confidence 579999998644 456677788899999999999999988754 4699999988764 333333 3457899999
Q ss_pred CCceEEEEEE-eCCCcEEEE--ccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec-CCc
Q 000454 339 PGSVYQLLSS-SDDGTCRIW--DARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDT 414 (1491)
Q Consensus 339 g~s~~~LaSg-S~DGtVrIW--Dl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs-~DG 414 (1491)
+. .|+.+ +.+|.+.|| |+.++.. ..+ ..+...+...+|+|||+.|+..+ .+|
T Consensus 259 G~---~La~~~~~~g~~~Iy~~d~~~~~~-~~l--------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g 314 (429)
T PRK01742 259 GS---RLAFASSKDGVLNIYVMGANGGTP-SQL--------------------TSGAGNNTEPSWSPDGQSILFTSDRSG 314 (429)
T ss_pred CC---EEEEEEecCCcEEEEEEECCCCCe-Eee--------------------ccCCCCcCCEEECCCCCEEEEEECCCC
Confidence 97 66655 468876665 5554432 111 11334567899999999777654 578
Q ss_pred eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEE
Q 000454 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1491)
Q Consensus 415 ~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIr 494 (1491)
...||++.... .....+ .+.. ....|+|++ +.|+..+.++ +.
T Consensus 315 ~~~I~~~~~~~--------~~~~~l-~~~~--~~~~~SpDG--------------------------~~ia~~~~~~-i~ 356 (429)
T PRK01742 315 SPQVYRMSASG--------GGASLV-GGRG--YSAQISADG--------------------------KTLVMINGDN-VV 356 (429)
T ss_pred CceEEEEECCC--------CCeEEe-cCCC--CCccCCCCC--------------------------CEEEEEcCCC-EE
Confidence 88888874311 111112 2332 456788876 5676666655 55
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEEC--CCC
Q 000454 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA--ADG 572 (1491)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl--~tg 572 (1491)
+||+.++... .+... .....+.|+|||++|++++.++.+.+|.+ .+|
T Consensus 357 ~~Dl~~g~~~------------------------------~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G 405 (429)
T PRK01742 357 KQDLTSGSTE------------------------------VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADG 405 (429)
T ss_pred EEECCCCCeE------------------------------EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 6888764310 00000 01235779999999999999998888875 468
Q ss_pred ceEEEEeCCCCCeEEEEEecC
Q 000454 573 SLVHSLTGHTESTYVLDVHPF 593 (1491)
Q Consensus 573 kll~tL~gHs~~VtsLafSPd 593 (1491)
..++.+.+|.+.+..++|+|.
T Consensus 406 ~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 406 RFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CceEEccCCCCCCCCcccCCC
Confidence 889999999998999999983
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-12 Score=161.84 Aligned_cols=279 Identities=16% Similarity=0.233 Sum_probs=190.7
Q ss_pred EECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCC
Q 000454 312 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1491)
Q Consensus 312 WDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h 391 (1491)
|++ .|..++.+..|...|..++.++... .+|++|+.||+|++|+.+.-..-.. ...........
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~--s~FvsgS~DGtVKvW~~~k~~~~~~-------------s~rS~ltys~~ 1097 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHT--SLFVSGSDDGTVKVWNLRKLEGEGG-------------SARSELTYSPE 1097 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCC--ceEEEecCCceEEEeeehhhhcCcc-------------eeeeeEEEecc
Confidence 664 5888899999999999999988763 2899999999999999864321100 00011122235
Q ss_pred CcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCC-CCceEE-EEccCccccccccccCCCCC
Q 000454 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE-NDVNYV-QFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 392 ~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~-~~V~sV-afSpdg~as~~s~~~~~~~~ 469 (1491)
...+.++.+.+.|..+|+++.||.|++.++...+... ...........+. +.+..+ +|...
T Consensus 1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~--~~~~~~ri~n~~~~g~vv~m~a~~~~--------------- 1160 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSK--RVATQVRIPNLKKDGVVVSMHAFTAI--------------- 1160 (1431)
T ss_pred CCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccc--ceeeeeecccccCCCceEEeeccccc---------------
Confidence 6778999999999999999999999999986421100 0000111111111 112111 11111
Q ss_pred CCccccccccCCC-eEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEE
Q 000454 470 STPKFKNSWFCHD-NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1491)
Q Consensus 470 ~~~~~~~~~~~~~-~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 548 (1491)
... .++.+..-+.|..||++... ..|.. ......+.|++++.
T Consensus 1161 ----------~~S~~lvy~T~~~~iv~~D~r~~~-----~~w~l----------------------k~~~~hG~vTSi~i 1203 (1431)
T KOG1240|consen 1161 ----------VQSHVLVYATDLSRIVSWDTRMRH-----DAWRL----------------------KNQLRHGLVTSIVI 1203 (1431)
T ss_pred ----------ccceeEEEEEeccceEEecchhhh-----hHHhh----------------------hcCccccceeEEEe
Confidence 122 78888889999999998633 12221 12234567999999
Q ss_pred cCCCCEEEEEeccceEEEEECCCCceEEEEe-CCCCCeEEEEEecCCC--cEEEEEe--CCCcEEEEeCCCCceEEEEee
Q 000454 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPFNP--RIAMSAG--YDGKTIVWDIWEGIPIRIYEI 623 (1491)
Q Consensus 549 SPDG~~LaSGs~DG~IrIWDl~tgkll~tL~-gHs~~VtsLafSPdd~--~lLaSgS--~DGtIrIWDl~tGk~l~~l~~ 623 (1491)
+|.+.++++|+..|.+.+||++-+.++..+. ++..+|..+..+|.-+ ...++++ ..+.|.+|++.+|.+..++..
T Consensus 1204 dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1204 DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence 9999999999999999999999888888774 4557888998888655 4554444 477899999999977776654
Q ss_pred CCc-------------------ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCccc
Q 000454 624 SRF-------------------RLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 660 (1491)
Q Consensus 624 h~~-------------------~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~ 660 (1491)
... ....+++..-+.++.+|+.|+.|+.||....+..
T Consensus 1284 s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1284 SDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred CCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 311 1223455556678899999999999999776543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-11 Score=146.87 Aligned_cols=318 Identities=14% Similarity=0.186 Sum_probs=208.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE-----EC-----CCeEEEE
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA-----SN-----DCIIRVW 312 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASG-----S~-----DGtIrVW 312 (1491)
...+...+++++|+++|.+ .+..|+|++..++..+.+...- .++++-|+|.|++|.+- .. .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 3457888999999988876 4578999999988655444432 89999999999998763 11 2347899
Q ss_pred ECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 313 Dl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
++.++.....+......-+++.|++|.. |++--..+.|.+|++...+.... .-+.
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEs----l~arlv~nev~f~~~~~f~~~~~---------------------kl~~ 165 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDES----LAARLVSNEVQFYDLGSFKTIQH---------------------KLSV 165 (566)
T ss_pred eeccceehhheehhhhcCcccccccchh----hhhhhhcceEEEEecCCccceee---------------------eeec
Confidence 9999665555543333336899999975 44444456799999876332211 1256
Q ss_pred cceEEEEECCCC--CEEEE-----ecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccC
Q 000454 393 HQIFCCAFNANG--TVFVT-----GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 393 ~~V~slafSPDG--~~Las-----Gs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
..|..+.++|.+ ..+|+ ++.-+.|+||....... ...+..-.-....-..+.|.+.|.
T Consensus 166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~------~~~~a~ksFFkadkvqm~WN~~gt--------- 230 (566)
T KOG2315|consen 166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ------HQPVANKSFFKADKVQMKWNKLGT--------- 230 (566)
T ss_pred cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc------cchhhhccccccceeEEEeccCCc---------
Confidence 678888998874 34443 45567899998742110 111111111112223455665442
Q ss_pred CCCCCCccccccccCCCeEEEEeC--C---------CeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCce
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTCSR--D---------GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSgS~--D---------GtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 534 (1491)
..|+.++. | .++.+.++.. ....
T Consensus 231 ----------------~LLvLastdVDktn~SYYGEq~Lyll~t~g------------------------------~s~~ 264 (566)
T KOG2315|consen 231 ----------------ALLVLASTDVDKTNASYYGEQTLYLLATQG------------------------------ESVS 264 (566)
T ss_pred ----------------eEEEEEEEeecCCCccccccceEEEEEecC------------------------------ceEE
Confidence 12222222 2 2233333331 1112
Q ss_pred eccCCCCCeeEEEEcCCCCEEEE--EeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC---CCcEEE
Q 000454 535 RILPTPRGVNMIVWSLDNRFVLA--AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY---DGKTIV 609 (1491)
Q Consensus 535 ~l~~h~~~VtsVafSPDG~~LaS--Gs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~---DGtIrI 609 (1491)
......++|.++.|+|+|+-+++ |-+-..+.|||++ +.++..+ ..++-+++-|+| .+++|+.+|. -|.|-|
T Consensus 265 V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 265 VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEE
Confidence 22334678999999999987665 5577789999984 6666665 356678899999 5566666664 478999
Q ss_pred EeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeC------CCcEEEEECC
Q 000454 610 WDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD------VGQLYILNTG 655 (1491)
Q Consensus 610 WDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~------DG~I~IWdl~ 655 (1491)
||+.+.+++..+.... -+-+.|+|||+++++++. |..++||+..
T Consensus 341 wDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 341 WDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred EeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 9999999998887443 445899999999998754 6889999973
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=146.22 Aligned_cols=356 Identities=14% Similarity=0.097 Sum_probs=204.5
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceee
Q 000454 290 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1491)
Q Consensus 290 sLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~ 369 (1491)
-++|||+|++||+++.- .+.|-|..+-+..+.+.. -..|.-|.|..+.- +.|.....++.|.+|++...+....+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~--~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSC--HILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccce--eeeeeeeccceEEEEEeecceeEEEec
Confidence 46799999999999865 788889888776665543 45678899998864 467778889999999998777665552
Q ss_pred cCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEE-EEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceE
Q 000454 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF-VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY 448 (1491)
Q Consensus 370 ~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~L-asGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~s 448 (1491)
.....+..++|+|||+.| .+..-+-.|.||.+.+. ....+.-....+..
T Consensus 89 --------------------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~----------~~~~~~~pK~~~kg 138 (447)
T KOG4497|consen 89 --------------------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ----------KGYLLPHPKTNVKG 138 (447)
T ss_pred --------------------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccc----------eeEEecccccCcee
Confidence 256678999999999655 45566889999999752 22333444556788
Q ss_pred EEEccCccccccccccCCCCCCCcccccccc-----C-CCeEEE---EeCC-CeEEEEecCCCCCCccccccccccccCC
Q 000454 449 VQFSGCAVASRFSLADSSKEDSTPKFKNSWF-----C-HDNIVT---CSRD-GSAIIWIPRSRRSHPKAARWTQAYHLKV 518 (1491)
Q Consensus 449 VafSpdg~as~~s~~~~~~~~~~~~~~~~~~-----~-~~~LaS---gS~D-GtIrIWDl~s~k~~~~~~~~~~~~~l~~ 518 (1491)
++|+|+|..........-+..-.......|. . +..=.+ -+.| ..+.+||--- ..
T Consensus 139 ~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L--------------ey-- 202 (447)
T KOG4497|consen 139 YAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL--------------EY-- 202 (447)
T ss_pred EEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh--------------hh--
Confidence 9999987321111000000000000000000 0 000000 0111 1233332110 00
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCC--------------
Q 000454 519 PPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES-------------- 584 (1491)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~-------------- 584 (1491)
..-...-.-++..++|+|.+++|++|+.|+.++|.+--+.+....+- |-..
T Consensus 203 --------------kv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~ 267 (447)
T KOG4497|consen 203 --------------KVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETF 267 (447)
T ss_pred --------------eeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhc
Confidence 00011223456777777777777777777777777665554443321 1110
Q ss_pred ------eEEEEEecCCCcEEEEEeCCCcEEEEeCC--------------CCceEEEEeeCCcceEEEEEcCCCCEEEEEe
Q 000454 585 ------TYVLDVHPFNPRIAMSAGYDGKTIVWDIW--------------EGIPIRIYEISRFRLVDGKFSPDGASIILSD 644 (1491)
Q Consensus 585 ------VtsLafSPdd~~lLaSgS~DGtIrIWDl~--------------tGk~l~~l~~h~~~VtslafSPDG~~LAsgs 644 (1491)
..++.|.|. |-...+|... ..++...+.....++.-++||+|..++|+-.
T Consensus 268 ~~~ql~~~cLsf~p~----------~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrn 337 (447)
T KOG4497|consen 268 SIVQLLHHCLSFTPT----------DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRN 337 (447)
T ss_pred chhhhcccccccCCC----------ccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeec
Confidence 123333331 1111222221 0111111222234677799999999999865
Q ss_pred C--CCcEEEEECCCCcccccc-----cceeeecCCCcceEEccCCCEEEccccccCccccCCCccccccCCCCCCcchhh
Q 000454 645 D--VGQLYILNTGQGESQKDA-----KYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTM 717 (1491)
Q Consensus 645 ~--DG~I~IWdl~tG~~~~~~-----~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l 717 (1491)
+ -..+++||+..-+....+ .....|.|..-.|+.-..+..| ++|.+ .+ |-.-+.|
T Consensus 338 d~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srL--------Y~W~p-sg-~~~V~vP-------- 399 (447)
T KOG4497|consen 338 DKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRL--------YFWAP-SG-PRVVGVP-------- 399 (447)
T ss_pred CCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceE--------EEEcC-CC-ceEEecC--------
Confidence 4 478999999877653322 3445677777667766555554 57773 33 2122223
Q ss_pred hhhcccccccEEEcCCCCeEEEe
Q 000454 718 YQQRRLGALGIEWRPSSLKLAVG 740 (1491)
Q Consensus 718 ~q~~~~~vl~lafSPDG~~LAvg 740 (1491)
+....+..+.|.-+|..++..
T Consensus 400 --~~GF~i~~l~W~~~g~~i~l~ 420 (447)
T KOG4497|consen 400 --KKGFNIQKLQWLQPGEFIVLC 420 (447)
T ss_pred --CCCceeeeEEecCCCcEEEEE
Confidence 233556779999999999987
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-13 Score=156.97 Aligned_cols=203 Identities=19% Similarity=0.233 Sum_probs=154.3
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeecc-
Q 000454 247 YCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG- 325 (1491)
Q Consensus 247 t~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~g- 325 (1491)
.+++|+.+|..|++|+.||+++||++.....+.....|...|.++.|+|||++||+.+.| ..+||++.+|.+++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999999898888888999999999999999999999999 899999999987776652
Q ss_pred -CCCceEEEEecCCCCc--eEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC
Q 000454 326 -HTAAVTAIAFSPRPGS--VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA 402 (1491)
Q Consensus 326 -Hs~~VtsLaFSPdg~s--~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP 402 (1491)
-......+.|+.++.. .+.++....-+.|+.|++........+ ...........|.+++.++
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l---------------~~~~~~~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL---------------RLRKKIKRFKSISSLAVSD 291 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc---------------chhhhhhccCcceeEEEcC
Confidence 2345667888877621 223333444567777776543321111 0111122345799999999
Q ss_pred CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCC
Q 000454 403 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482 (1491)
Q Consensus 403 DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~ 482 (1491)
+|+++|.|+.||.|.|++..+.+ .....-..|...|+.+.|+|+. +
T Consensus 292 dGkf~AlGT~dGsVai~~~~~lq--------~~~~vk~aH~~~VT~ltF~Pds--------------------------r 337 (398)
T KOG0771|consen 292 DGKFLALGTMDGSVAIYDAKSLQ--------RLQYVKEAHLGFVTGLTFSPDS--------------------------R 337 (398)
T ss_pred CCcEEEEeccCCcEEEEEeceee--------eeEeehhhheeeeeeEEEcCCc--------------------------C
Confidence 99999999999999999986532 2333456899999999999985 4
Q ss_pred eEEEEeCCCeEEEEecC
Q 000454 483 NIVTCSRDGSAIIWIPR 499 (1491)
Q Consensus 483 ~LaSgS~DGtIrIWDl~ 499 (1491)
++++.+.+..+.+..+.
T Consensus 338 ~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 338 YLASVSSDNEAAVTKLA 354 (398)
T ss_pred cccccccCCceeEEEEe
Confidence 66666777776666544
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=161.32 Aligned_cols=235 Identities=15% Similarity=0.080 Sum_probs=162.7
Q ss_pred CCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCC---CcEEEEccCCCCccceeecCCCCCcccCCCC
Q 000454 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---GTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1491)
Q Consensus 306 DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D---GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~ 382 (1491)
+..|.|||..... ...+..|...|.+++|+|+++ .|+.++.+ ..|.+||+.++.......
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~---~la~~s~~~~~~~i~i~dl~tg~~~~l~~------------- 245 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGS---KLAYVSFENKKSQLVVHDLRSGARKVVAS------------- 245 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCC---EEEEEEecCCCcEEEEEeCCCCceEEEec-------------
Confidence 4689999985444 566777888999999999998 67766543 369999998775322110
Q ss_pred CCCCCCCCCCcceEEEEECCCCCEEEEec-CCceEEEE--eCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccc
Q 000454 383 APSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVW--NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 383 ~~~~s~~~h~~~V~slafSPDG~~LasGs-~DG~IrVW--Dl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~ 459 (1491)
.......++|+|||+.|+++. .+|.+.|| |+.+ .....+..+...+....|+|++
T Consensus 246 --------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~----------~~~~~lt~~~~~~~~~~wSpDG---- 303 (429)
T PRK01742 246 --------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG----------GTPSQLTSGAGNNTEPSWSPDG---- 303 (429)
T ss_pred --------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCC----------CCeEeeccCCCCcCCEEECCCC----
Confidence 111233689999999888764 57766655 5432 1234456677778899999987
Q ss_pred cccccCCCCCCCccccccccCCCeEE-EEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIV-TCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~La-SgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
..|+ +...+|...||++.... .....+ .
T Consensus 304 ----------------------~~i~f~s~~~g~~~I~~~~~~~----------------------------~~~~~l-~ 332 (429)
T PRK01742 304 ----------------------QSILFTSDRSGSPQVYRMSASG----------------------------GGASLV-G 332 (429)
T ss_pred ----------------------CEEEEEECCCCCceEEEEECCC----------------------------CCeEEe-c
Confidence 3444 45567888999765311 001111 1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC--CCCc
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI--WEGI 616 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl--~tGk 616 (1491)
+.. ..++|+|||++|++++.++ |.+||+.+++.......+ ....+.|+| ++++|+.++.+|.+.+|.+ .+|.
T Consensus 333 ~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 333 GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECC-CCCEEEEEEcCCCceEEEEEECCCC
Confidence 221 3468999999999887764 666999988765433332 235678999 6677778888998888876 3688
Q ss_pred eEEEEeeCCcceEEEEEcCC
Q 000454 617 PIRIYEISRFRLVDGKFSPD 636 (1491)
Q Consensus 617 ~l~~l~~h~~~VtslafSPD 636 (1491)
.+..+..+.+.+...+|||-
T Consensus 407 ~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ceEEccCCCCCCCCcccCCC
Confidence 88888877888899999984
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.1e-11 Score=143.58 Aligned_cols=314 Identities=14% Similarity=0.100 Sum_probs=188.5
Q ss_pred cccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CC
Q 000454 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS-ND 306 (1491)
Q Consensus 228 ~~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS-~D 306 (1491)
.+..+.+.+.++......-..++|+|||+++.+++.||.|.++|+.+++.+++++.. ....++++++||++++++. ..
T Consensus 21 iD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~ 99 (369)
T PF02239_consen 21 IDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEP 99 (369)
T ss_dssp EETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEET
T ss_pred EECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCC
Confidence 345667888899866554455789999999999999999999999999999999854 4568899999999998776 57
Q ss_pred CeEEEEECCCCCceeeeccC-------CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccC
Q 000454 307 CIIRVWRLPDGLPISVLRGH-------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 379 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~gH-------s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g 379 (1491)
+.|.|+|.++.++++.+... ...+.+|..+|... .++++.-..+.|.+.|............
T Consensus 100 ~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~--~fVv~lkd~~~I~vVdy~d~~~~~~~~i--------- 168 (369)
T PF02239_consen 100 GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP--EFVVNLKDTGEIWVVDYSDPKNLKVTTI--------- 168 (369)
T ss_dssp TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS--EEEEEETTTTEEEEEETTTSSCEEEEEE---------
T ss_pred CceeEeccccccceeecccccccccccCCCceeEEecCCCC--EEEEEEccCCeEEEEEeccccccceeee---------
Confidence 99999999999998877532 34678888888876 2344444558787778766543322211
Q ss_pred CCCCCCCCCCCCCcceEEEEECCCCCEEEEe-cCCceEEEEeCCCCCCCCCCCCCceeeee----cCCCCCceEEEEccC
Q 000454 380 RNMAPSSSAGPQSHQIFCCAFNANGTVFVTG-SSDTLARVWNACKPNTDDSDQPNHEIDVL----SGHENDVNYVQFSGC 454 (1491)
Q Consensus 380 ~~~~~~~s~~~h~~~V~slafSPDG~~LasG-s~DG~IrVWDl~t~~~~~s~~~~~~i~~l----~gH~~~V~sVafSpd 454 (1491)
..........|+|++++++++ .....|.++|..+.+ .+..+ ..|...+..+- +|.
T Consensus 169 ----------~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k---------~v~~i~~g~~p~~~~~~~~p-hp~ 228 (369)
T PF02239_consen 169 ----------KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK---------LVALIDTGKKPHPGPGANFP-HPG 228 (369)
T ss_dssp ----------E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE---------EEEEEE-SSSBEETTEEEEE-ETT
T ss_pred ----------cccccccccccCcccceeeecccccceeEEEeeccce---------EEEEeecccccccccccccc-CCC
Confidence 123346788999999987664 556789999986532 22221 12333333321 111
Q ss_pred ccccccccccCCCCCCCccccccc---cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCC
Q 000454 455 AVASRFSLADSSKEDSTPKFKNSW---FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 531 (1491)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~~~---~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 531 (1491)
. ...| ......++.-....+.+||.... .
T Consensus 229 ~-------------------g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-----------------------------k 260 (369)
T PF02239_consen 229 F-------------------GPVWATSGLGYFAIPLIGTDPVSVHDDYAW-----------------------------K 260 (369)
T ss_dssp T-------------------EEEEEEEBSSSSEEEEEE--TTT-STTTBT-----------------------------S
T ss_pred c-------------------ceEEeeccccceecccccCCccccchhhcC-----------------------------e
Confidence 0 0000 00011212222223333443321 1
Q ss_pred CceeccCCCCCeeEEEEcCCCCEEEEE----eccceEEEEECCCCceEEEEeCC-CCCeEEEEEecCCCcEEEEEeCCC-
Q 000454 532 PRQRILPTPRGVNMIVWSLDNRFVLAA----IMDCRICVWNAADGSLVHSLTGH-TESTYVLDVHPFNPRIAMSAGYDG- 605 (1491)
Q Consensus 532 ~~~~l~~h~~~VtsVafSPDG~~LaSG----s~DG~IrIWDl~tgkll~tL~gH-s~~VtsLafSPdd~~lLaSgS~DG- 605 (1491)
.+..+.....+ .-+..+|++++|++. .....|.|+|..+.+.+..+... ...+..+.|++++..+.+|.-..+
T Consensus 261 vv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~ 339 (369)
T PF02239_consen 261 VVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG 339 (369)
T ss_dssp EEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT
T ss_pred EEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC
Confidence 22333333334 567889999999998 45689999999999888877532 235889999997776666666555
Q ss_pred cEEEEeCCCCceEEEEe
Q 000454 606 KTIVWDIWEGIPIRIYE 622 (1491)
Q Consensus 606 tIrIWDl~tGk~l~~l~ 622 (1491)
.|.|||..+.+.+..+.
T Consensus 340 ~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 340 AIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCcEEEEEEE
Confidence 89999999999998887
|
... |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=150.78 Aligned_cols=201 Identities=19% Similarity=0.283 Sum_probs=148.7
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCcccee
Q 000454 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1491)
Q Consensus 289 tsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i 368 (1491)
.+++|+.+|..|++|+.||++|||++.+...+.....|.+.|.++.|+||++ .|++.+.| ..+||++.++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk---~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGK---FLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCc---EEEEecCC-ceEEEEeccCchhhhc
Confidence 7899999999999999999999999999998888889999999999999998 89999999 8999999998665554
Q ss_pred ecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC---C--EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCC
Q 000454 369 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG---T--VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1491)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG---~--~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1491)
.- ......+..|.|+.|+ . +++....-+.|+.|++
T Consensus 224 t~------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~---------------------- 263 (398)
T KOG0771|consen 224 TP------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI---------------------- 263 (398)
T ss_pred CC------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEe----------------------
Confidence 10 1223344556666554 1 1111111222222222
Q ss_pred CCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCC
Q 000454 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523 (1491)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~ 523 (1491)
.+|+-.. .
T Consensus 264 --------------------------------------------------~~w~~~~------~---------------- 271 (398)
T KOG0771|consen 264 --------------------------------------------------SLWSGSN------F---------------- 271 (398)
T ss_pred --------------------------------------------------eeecccc------c----------------
Confidence 1221100 0
Q ss_pred CCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEE-eCCCCCeEEEEEecCCCcEEEEEe
Q 000454 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPFNPRIAMSAG 602 (1491)
Q Consensus 524 ~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL-~gHs~~VtsLafSPdd~~lLaSgS 602 (1491)
............|++++.|+||+++|.|+.||.|-|++..+.++++.. +.|...|+.|.|+| +.+++++.+
T Consensus 272 -------l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svS 343 (398)
T KOG0771|consen 272 -------LRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVS 343 (398)
T ss_pred -------cchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccc
Confidence 011112223346899999999999999999999999999998887765 57999999999999 778888888
Q ss_pred CCCcEEEEeCC
Q 000454 603 YDGKTIVWDIW 613 (1491)
Q Consensus 603 ~DGtIrIWDl~ 613 (1491)
.|..+.|..+.
T Consensus 344 s~~~~~v~~l~ 354 (398)
T KOG0771|consen 344 SDNEAAVTKLA 354 (398)
T ss_pred cCCceeEEEEe
Confidence 88888887764
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-11 Score=136.69 Aligned_cols=316 Identities=13% Similarity=0.142 Sum_probs=210.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCCce
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND--CIIRVWRLPDGLPI 320 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D--GtIrVWDl~tgk~i 320 (1491)
...|..+.|..+...|..|+.|| -++|.................|.-+-|+ ..+||..+.+ ..+++.++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 45677888999999999999998 5788876554422222233456666676 4467766654 34899998888777
Q ss_pred eeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEE
Q 000454 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1491)
Q Consensus 321 ~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slaf 400 (1491)
..+. ....|.+|.+..+ +|+++-.+. |.|||+++.+.+.++.. ..++...+.++++
T Consensus 82 Ce~~-fpt~IL~VrmNr~-----RLvV~Lee~-IyIydI~~MklLhTI~t-----------------~~~n~~gl~AlS~ 137 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNRK-----RLVVCLEES-IYIYDIKDMKLLHTIET-----------------TPPNPKGLCALSP 137 (391)
T ss_pred EEEe-cCCceEEEEEccc-----eEEEEEccc-EEEEecccceeehhhhc-----------------cCCCccceEeecc
Confidence 7665 5678999999876 566666555 99999999988877632 1234556777777
Q ss_pred CCCCCEEEEec--CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 401 NANGTVFVTGS--SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 401 SPDG~~LasGs--~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
++.+.++|.-+ ..|.|.|||+.+ .+.+..+..|.+.+.+++|+++|
T Consensus 138 n~~n~ylAyp~s~t~GdV~l~d~~n---------l~~v~~I~aH~~~lAalafs~~G----------------------- 185 (391)
T KOG2110|consen 138 NNANCYLAYPGSTTSGDVVLFDTIN---------LQPVNTINAHKGPLAALAFSPDG----------------------- 185 (391)
T ss_pred CCCCceEEecCCCCCceEEEEEccc---------ceeeeEEEecCCceeEEEECCCC-----------------------
Confidence 77778888643 468999999965 55677888999999999999997
Q ss_pred cCCCeEEEEeCCCe-EEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE
Q 000454 479 FCHDNIVTCSRDGS-AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1491)
Q Consensus 479 ~~~~~LaSgS~DGt-IrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS 557 (1491)
.+|+|+|..|+ |||+.+.+++.... +.+ -.....|.+++|+|++.+|++
T Consensus 186 ---~llATASeKGTVIRVf~v~~G~kl~e---FRR------------------------G~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 186 ---TLLATASEKGTVIRVFSVPEGQKLYE---FRR------------------------GTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred ---CEEEEeccCceEEEEEEcCCccEeee---eeC------------------------CceeeEEEEEEECCCCCeEEE
Confidence 69999999998 57888876542211 000 001345889999999999999
Q ss_pred EeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEE--EEEe-CCCcEEEEeCCCCceEEEEeeCCcce-EEEEE
Q 000454 558 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA--MSAG-YDGKTIVWDIWEGIPIRIYEISRFRL-VDGKF 633 (1491)
Q Consensus 558 Gs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lL--aSgS-~DGtIrIWDl~tGk~l~~l~~h~~~V-tslaf 633 (1491)
.+..++|+||-+.... ......+-....| .+.+. +++- -.+.-.+||.... ........... ..+.+
T Consensus 236 sS~TeTVHiFKL~~~~----~~~~~~p~~~~~~---~~~~sk~~~sylps~V~~~~~~~R~--FAt~~l~~s~~~~~~~l 306 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVS----NNPPESPTAGTSW---FGKVSKAATSYLPSQVSSVLDQSRK--FATAKLPESGRKNICSL 306 (391)
T ss_pred ecCCCeEEEEEecccc----cCCCCCCCCCCcc---cchhhhhhhhhcchhhhhhhhhccc--eeEEEccCCCccceEEe
Confidence 9999999999986543 1111111000000 00000 0110 0122234555332 23332222222 23344
Q ss_pred c--CCCCEEEEEeCCCcEEEEECCC
Q 000454 634 S--PDGASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 634 S--PDG~~LAsgs~DG~I~IWdl~t 656 (1491)
. +...++.+++.||.++.|.+..
T Consensus 307 ~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 307 SSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred eccCCCCEEEEEEcCCeEEEEEcCC
Confidence 4 5788999999999999999854
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.3e-12 Score=147.20 Aligned_cols=267 Identities=16% Similarity=0.249 Sum_probs=184.4
Q ss_pred cCCCceEEEEecCCCCceEEEEEEeCCCcEEEE-ccCCCCccceeecCCCCCcccC-CCCCCCCCCCCCCcceEEEEECC
Q 000454 325 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW-DARYSQFSPRIYIPRPSDAVAG-RNMAPSSSAGPQSHQIFCCAFNA 402 (1491)
Q Consensus 325 gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIW-Dl~tg~~~~~i~~~~~~~~~~g-~~~~~~~s~~~h~~~V~slafSP 402 (1491)
.|...|.++.|+.... ++.++.|..+.+| ++.+.. ...+..+. +.+.. .......... -.
T Consensus 12 r~~e~vc~v~w~~~ee----i~~~~dDh~~~~~~~~~~~s-~~~~~~p~--df~pt~~h~~~rs~~~-----------g~ 73 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE----IYFVSDDHQIFKWSDVSRDS-VEVAKLPD--DFVPTDMHLGGRSSGG-----------GK 73 (737)
T ss_pred ccceeEEeecccccce----EEEeccCceEEEeecccchh-hhhhhCCc--ccCCccccccccccCC-----------CC
Confidence 4667778999998864 5555555555555 554332 22222111 00000 0000000000 01
Q ss_pred CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCC
Q 000454 403 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482 (1491)
Q Consensus 403 DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~ 482 (1491)
....|+.++.||.+.|.+-. .+.-..+.+|.+.|.+-.|+|+| .
T Consensus 74 ~~d~~~i~s~DGkf~il~k~----------~rVE~sv~AH~~A~~~gRW~~dG--------------------------t 117 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKS----------ARVERSISAHAAAISSGRWSPDG--------------------------A 117 (737)
T ss_pred CcceEEEEcCCceEEEeccc----------chhhhhhhhhhhhhhhcccCCCC--------------------------c
Confidence 23467888889998887653 34455678999999999999997 5
Q ss_pred eEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccc
Q 000454 483 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC 562 (1491)
Q Consensus 483 ~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG 562 (1491)
-|++++.||.|++|.-.. .....+......|.|++|.|+..-++.+ ..+
T Consensus 118 gLlt~GEDG~iKiWSrsG------------------------------MLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~ 166 (737)
T KOG1524|consen 118 GLLTAGEDGVIKIWSRSG------------------------------MLRSTVVQNEESIRCARWAPNSNSIVFC-QGG 166 (737)
T ss_pred eeeeecCCceEEEEeccc------------------------------hHHHHHhhcCceeEEEEECCCCCceEEe-cCC
Confidence 799999999999996431 1222344456789999999998877665 455
Q ss_pred eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEE
Q 000454 563 RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIIL 642 (1491)
Q Consensus 563 ~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAs 642 (1491)
.+.|=.+.....+-.+++|.+-|.++.|+| -..++++||.|-..+|||. -|..+..-..|..+|++++|.|| +.+++
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v 243 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLL 243 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceee
Confidence 777877777777788899999999999999 6788999999999999998 67887777778889999999999 66666
Q ss_pred EeCCCcEEEEECCCCcccccccceeeecCCCcceEEc-cCCCEE
Q 000454 643 SDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQD-TYGNVL 685 (1491)
Q Consensus 643 gs~DG~I~IWdl~tG~~~~~~~~~~~fs~D~r~La~d-~~G~vL 685 (1491)
++. .++++=....| ....+.|++||..++.. ..|.++
T Consensus 244 ~S~-nt~R~~~p~~G-----SifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 244 WSY-NTARFSSPRVG-----SIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred eee-eeeeecCCCcc-----ceEEEEEcCCCceeeccccCceEE
Confidence 665 45553333333 45677899999988765 444443
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.1e-13 Score=153.59 Aligned_cols=278 Identities=19% Similarity=0.282 Sum_probs=206.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeee
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L 323 (1491)
..-+.+.|+.+|+.|+.|+.-|.|-.+|+.++.+...+.. ...|.++.|-.+.+++|++ ....+.||| ..|..++.+
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHCl 206 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCL 206 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeeh
Confidence 3447799999999999999999999999999999998873 5679999999999888887 456899999 578888888
Q ss_pred ccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCC
Q 000454 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1491)
Q Consensus 324 ~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPD 403 (1491)
+.| ..|..+.|.|.- ++|++++..|.++.-|+.+|+.+..+.. ..+.+..++-+|-
T Consensus 207 k~~-~~v~rLeFLPyH---fLL~~~~~~G~L~Y~DVS~GklVa~~~t--------------------~~G~~~vm~qNP~ 262 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYH---FLLVAASEAGFLKYQDVSTGKLVASIRT--------------------GAGRTDVMKQNPY 262 (545)
T ss_pred hhc-Cchhhhcccchh---heeeecccCCceEEEeechhhhhHHHHc--------------------cCCccchhhcCCc
Confidence 865 568999999974 4888999999999999999988776632 2333444444444
Q ss_pred CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCe
Q 000454 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDN 483 (1491)
Q Consensus 404 G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~ 483 (1491)
...+-+|..
T Consensus 263 NaVih~Ghs----------------------------------------------------------------------- 271 (545)
T KOG1272|consen 263 NAVIHLGHS----------------------------------------------------------------------- 271 (545)
T ss_pred cceEEEcCC-----------------------------------------------------------------------
Confidence 444444444
Q ss_pred EEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccce
Q 000454 484 IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR 563 (1491)
Q Consensus 484 LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~ 563 (1491)
.|+|.+|.+.. ..++..+..|.++|.+|++.++|+|+||.+.|..
T Consensus 272 ------nGtVSlWSP~s-----------------------------kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~ 316 (545)
T KOG1272|consen 272 ------NGTVSLWSPNS-----------------------------KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK 316 (545)
T ss_pred ------CceEEecCCCC-----------------------------cchHHHHHhcCCCcceEEECCCCcEEeecccccc
Confidence 45555554432 1345556778889999999999999999999999
Q ss_pred EEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC-CC--CceEEEEeeC--CcceEEEEEcCCCC
Q 000454 564 ICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI-WE--GIPIRIYEIS--RFRLVDGKFSPDGA 638 (1491)
Q Consensus 564 IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl-~t--Gk~l~~l~~h--~~~VtslafSPDG~ 638 (1491)
|+|||++....++++.. .-+...++||. +-+++++....|.||.= -. +..-..+-.| .+.|.++.|.|-..
T Consensus 317 ~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq---kglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 317 VKIWDLRNFYQLHTYRT-PHPASNLSLSQ---KGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED 392 (545)
T ss_pred eeEeeeccccccceeec-CCCcccccccc---ccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH
Confidence 99999999887777665 34456788865 33334666678999952 22 1222222222 34899999999998
Q ss_pred EEEEEeCCCcEEEEECCCCc
Q 000454 639 SIILSDDVGQLYILNTGQGE 658 (1491)
Q Consensus 639 ~LAsgs~DG~I~IWdl~tG~ 658 (1491)
.|-+|-..|--.|.=.+.|+
T Consensus 393 vLGIGH~~G~tsilVPGsGe 412 (545)
T KOG1272|consen 393 VLGIGHAGGITSILVPGSGE 412 (545)
T ss_pred eeeccccCCceeEeccCCCC
Confidence 99888877766666555554
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-12 Score=149.99 Aligned_cols=187 Identities=19% Similarity=0.217 Sum_probs=138.6
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeee-ccCCCceEEEEecCCCCceEEEEEEeCCCcEE
Q 000454 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 277 ~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L-~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVr 355 (1491)
+.+.|.||.+.|.|+.|+.+|.+|++|+.|-.|.|||.-.-+++..+ .+|.+.|.++.|-|...+ .++++|..|..|+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnn-riv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNN-RIVLSGAGDKLIK 120 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCC-eEEEeccCcceEE
Confidence 34678899999999999999999999999999999999888887776 489999999999998643 4899999999999
Q ss_pred EEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCCCCCCCCC-CC
Q 000454 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKPNTDDSDQ-PN 433 (1491)
Q Consensus 356 IWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~~~~~s~~-~~ 433 (1491)
++|+...+.-..- .....+......|...|..++..|++ ..|.+++.||+|+-||++.+..-.... -.
T Consensus 121 lfdl~~~~~~~~d----------~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~ 190 (758)
T KOG1310|consen 121 LFDLDSSKEGGMD----------HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP 190 (758)
T ss_pred EEecccccccccc----------cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence 9999753311110 11112233445688889999999988 889999999999999998643211111 11
Q ss_pred ceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecC
Q 000454 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1491)
Q Consensus 434 ~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~ 499 (1491)
..+..+...--...++.++|.. +.+|++|+.|-.+++||.+
T Consensus 191 ~~l~ny~~~lielk~ltisp~r-------------------------p~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPSR-------------------------PYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred HHHHHhchhhheeeeeeecCCC-------------------------CceEEecCCCchhhhhhhh
Confidence 1111122222345567777653 5689999999999999965
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-11 Score=144.09 Aligned_cols=298 Identities=13% Similarity=0.129 Sum_probs=205.3
Q ss_pred ceeEEEEccCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYV-ITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311 (1491)
Q Consensus 233 ~k~v~tL~GH~~~Vt~VaFSpDG~~L-ATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrV 311 (1491)
.++++-|. |....+.|..+|||+|| |||..-..|++||+....+...-.-....|.-.-++.|-..++.-..|.+|-+
T Consensus 42 ieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ief 120 (703)
T KOG2321|consen 42 IELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEF 120 (703)
T ss_pred HHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeee
Confidence 33444443 78889999999999987 67777889999999876654443323445555566666666666677888877
Q ss_pred EECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCC
Q 000454 312 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1491)
Q Consensus 312 WDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h 391 (1491)
... -|.... ++ -...-..|+++.-.- -|++++....|.-+++..|.++..+.. .
T Consensus 121 Hak-~G~hy~-~R-IP~~GRDm~y~~~sc---Dly~~gsg~evYRlNLEqGrfL~P~~~--------------------~ 174 (703)
T KOG2321|consen 121 HAK-YGRHYR-TR-IPKFGRDMKYHKPSC---DLYLVGSGSEVYRLNLEQGRFLNPFET--------------------D 174 (703)
T ss_pred hhh-cCeeee-ee-cCcCCccccccCCCc---cEEEeecCcceEEEEcccccccccccc--------------------c
Confidence 652 222111 11 112234455554332 355555566688899999988776632 3
Q ss_pred CcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCC
Q 000454 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1491)
Q Consensus 392 ~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1491)
...+++|..++-..+|++|+.+|.|.+||.+... .+..+..... |.+ .|
T Consensus 175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks---------rv~~l~~~~~-v~s---~p------------------ 223 (703)
T KOG2321|consen 175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS---------RVGTLDAASS-VNS---HP------------------ 223 (703)
T ss_pred cccceeeeecCccceEEecccCceEEEecchhhh---------hheeeecccc-cCC---Cc------------------
Confidence 4679999999999999999999999999997521 1111110000 000 00
Q ss_pred ccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC
Q 000454 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551 (1491)
Q Consensus 472 ~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD 551 (1491)
.......|+++.|+.+
T Consensus 224 ----------------------------------------------------------------g~~~~~svTal~F~d~ 239 (703)
T KOG2321|consen 224 ----------------------------------------------------------------GGDAAPSVTALKFRDD 239 (703)
T ss_pred ----------------------------------------------------------------cccccCcceEEEecCC
Confidence 0011235899999999
Q ss_pred CCEEEEEeccceEEEEECCCCceEEEEe-CCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeeCCcceE
Q 000454 552 NRFVLAAIMDCRICVWNAADGSLVHSLT-GHTESTYVLDVHPFNPR-IAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV 629 (1491)
Q Consensus 552 G~~LaSGs~DG~IrIWDl~tgkll~tL~-gHs~~VtsLafSPdd~~-lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~Vt 629 (1491)
|-.+++|+.+|.|+|||+++.+++..-. +..-+|..+.|.+.+.. .|+ ......++|||-.+|+....+.. ...+.
T Consensus 240 gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~-S~Dk~~~kiWd~~~Gk~~asiEp-t~~lN 317 (703)
T KOG2321|consen 240 GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVV-SMDKRILKIWDECTGKPMASIEP-TSDLN 317 (703)
T ss_pred ceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEE-ecchHHhhhcccccCCceeeccc-cCCcC
Confidence 9999999999999999999988776542 33457889999775443 443 44566899999999999999884 44599
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 630 DGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 630 slafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
++|+-|++.+++++-.++.+..|=+
T Consensus 318 D~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 318 DFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred ceeeecCCceEEEecCCCcceeEEc
Confidence 9999999999999988887766655
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.9e-11 Score=135.27 Aligned_cols=239 Identities=15% Similarity=0.213 Sum_probs=168.9
Q ss_pred CceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEE
Q 000454 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 407 (1491)
Q Consensus 328 ~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~L 407 (1491)
..+..+.|..+.. .|..|+.|| .++|....-..... .......|.-+-|+.. ++
T Consensus 6 ~ti~~~~~Nqd~~---~lsvGs~~G-yk~~~~~~~~k~~~--------------------~~~~~~~IvEmLFSSS--Lv 59 (391)
T KOG2110|consen 6 PTINFIGFNQDST---LLSVGSKDG-YKIFSCSPFEKCFS--------------------KDTEGVSIVEMLFSSS--LV 59 (391)
T ss_pred cceeeeeecccee---EEEccCCCc-eeEEecCchHHhhc--------------------ccCCCeEEEEeecccc--ee
Confidence 4566777888875 777788887 57776653322100 1113344666667644 44
Q ss_pred EEecCC--ceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEE
Q 000454 408 VTGSSD--TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV 485 (1491)
Q Consensus 408 asGs~D--G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~La 485 (1491)
|..+.+ ..++++++.+. ..+..+ .....|.+|.+.. ++|+
T Consensus 60 aiV~~~qpr~Lkv~~~Kk~---------~~ICe~-~fpt~IL~VrmNr----------------------------~RLv 101 (391)
T KOG2110|consen 60 AIVSIKQPRKLKVVHFKKK---------TTICEI-FFPTSILAVRMNR----------------------------KRLV 101 (391)
T ss_pred EEEecCCCceEEEEEcccC---------ceEEEE-ecCCceEEEEEcc----------------------------ceEE
Confidence 444433 34788887542 122222 1234566666653 4666
Q ss_pred EEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE--eccce
Q 000454 486 TCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA--IMDCR 563 (1491)
Q Consensus 486 SgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG--s~DG~ 563 (1491)
++=.+. |.|||+++.+.... +....++..++.++.++..+.+||.- ...|.
T Consensus 102 V~Lee~-IyIydI~~MklLhT--------------------------I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 102 VCLEES-IYIYDIKDMKLLHT--------------------------IETTPPNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred EEEccc-EEEEecccceeehh--------------------------hhccCCCccceEeeccCCCCceEEecCCCCCce
Confidence 665544 99999997543211 11222355567777777777788863 35689
Q ss_pred EEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc-EEEEeCCCCceEEEEeeCCc--ceEEEEEcCCCCEE
Q 000454 564 ICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK-TIVWDIWEGIPIRIYEISRF--RLVDGKFSPDGASI 640 (1491)
Q Consensus 564 IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGt-IrIWDl~tGk~l~~l~~h~~--~VtslafSPDG~~L 640 (1491)
|.|||+.+-+.+..+..|.+.+.+|+|++ ++.+||||+..|+ |||+.+.+|+.+..|..+.. .|.+++|+||+++|
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 99999999999999999999999999999 8899999999996 58999999999999986544 57799999999999
Q ss_pred EEEeCCCcEEEEECCCCc
Q 000454 641 ILSDDVGQLYILNTGQGE 658 (1491)
Q Consensus 641 Asgs~DG~I~IWdl~tG~ 658 (1491)
++.+..++|+||.+..-.
T Consensus 234 ~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEecCCCeEEEEEecccc
Confidence 999999999999997654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7e-11 Score=145.69 Aligned_cols=234 Identities=12% Similarity=0.021 Sum_probs=154.2
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCCceeeeccCCCceEEEEecCCCCc
Q 000454 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN---DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1491)
Q Consensus 265 GtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~---DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s 341 (1491)
..|.+||...... ..+..+...+.+.+|+|||+.||..+. +..|.+|++.+++.... ....+.+..++|+||++
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~- 255 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGS- 255 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCC-
Confidence 4799999875443 444556778999999999999987643 35799999988764332 22334455789999997
Q ss_pred eEEEEE-EeCCC--cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCC-ceEE
Q 000454 342 VYQLLS-SSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD-TLAR 417 (1491)
Q Consensus 342 ~~~LaS-gS~DG--tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~D-G~Ir 417 (1491)
.|+. .+.+| .|.+||+.++...... .....+...+|+|||+.|+..+.+ +...
T Consensus 256 --~La~~~~~~g~~~I~~~d~~tg~~~~lt---------------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~ 312 (429)
T PRK03629 256 --KLAFALSKTGSLNLYVMDLASGQIRQVT---------------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQ 312 (429)
T ss_pred --EEEEEEcCCCCcEEEEEECCCCCEEEcc---------------------CCCCCcCceEECCCCCEEEEEeCCCCCce
Confidence 5554 34455 4888999876542211 122346778999999988776653 4445
Q ss_pred EE--eCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeC-C--Ce
Q 000454 418 VW--NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-D--GS 492 (1491)
Q Consensus 418 VW--Dl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~-D--Gt 492 (1491)
|| ++.++ ....+..+...+....|+|++ ..|+..+. + ..
T Consensus 313 Iy~~d~~~g----------~~~~lt~~~~~~~~~~~SpDG--------------------------~~Ia~~~~~~g~~~ 356 (429)
T PRK03629 313 VYKVNINGG----------APQRITWEGSQNQDADVSSDG--------------------------KFMVMVSSNGGQQH 356 (429)
T ss_pred EEEEECCCC----------CeEEeecCCCCccCEEECCCC--------------------------CEEEEEEccCCCce
Confidence 55 55432 122333334455678899986 45555443 3 35
Q ss_pred EEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccce---EEEEEC
Q 000454 493 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR---ICVWNA 569 (1491)
Q Consensus 493 IrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~---IrIWDl 569 (1491)
|.+||+.++.. ..+.. ........|+|||++|+.++.++. ++++++
T Consensus 357 I~~~dl~~g~~------------------------------~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 357 IAKQDLATGGV------------------------------QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred EEEEECCCCCe------------------------------EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 77788775331 01110 111235679999999999887764 777787
Q ss_pred CCCceEEEEeCCCCCeEEEEEec
Q 000454 570 ADGSLVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 570 ~tgkll~tL~gHs~~VtsLafSP 592 (1491)
+|.....+.+|.+.+...+|+|
T Consensus 406 -~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 406 -DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred -CCCCeEECccCCCCcCCcccCC
Confidence 5777788888888899999988
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-11 Score=144.26 Aligned_cols=198 Identities=11% Similarity=0.121 Sum_probs=142.6
Q ss_pred CCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeee--cCCCCCceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 401 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL--SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 401 SPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l--~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
.+.|--+++|-.-|.|.++|..... ...+... ......|+++.|-|..
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~-------~sklfne~r~i~ktsvT~ikWvpg~----------------------- 231 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFE-------VSKLFNEERLINKSSVTCIKWVPGS----------------------- 231 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhH-------HHHhhhhcccccccceEEEEEEeCC-----------------------
Confidence 4567778888889999998875311 1111111 1123689999999865
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCC---CCCCCCCCCCceeccCCCCCeeEEEEcCCCCEE
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPP---MPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~L 555 (1491)
...|+.+-.+|.+.++|....... ....|.. ++.+... .........++.+.......|+.++|+|||++|
T Consensus 232 --~~~Fl~a~~sGnlyly~~~~~~~~-t~p~~~~---~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~L 305 (636)
T KOG2394|consen 232 --DSLFLVAHASGNLYLYDKEIVCGA-TAPSYQA---LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYL 305 (636)
T ss_pred --CceEEEEEecCceEEeeccccccC-CCCcccc---cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceE
Confidence 457888889999999976421100 0000000 0000000 000001113444444556689999999999999
Q ss_pred EEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcC
Q 000454 556 LAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSP 635 (1491)
Q Consensus 556 aSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSP 635 (1491)
|+.+.||.++|||..+.+++..++..-+...|++|+| |+++|++||.|-.|.||.+..++.+..-++|...|..|+|.|
T Consensus 306 A~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 306 ATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999888888888999999999 889999999999999999999999999999999999999985
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-10 Score=141.13 Aligned_cols=233 Identities=15% Similarity=0.079 Sum_probs=151.2
Q ss_pred eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEe---CCCcEEEEccCCCCccceeecCCCCCcccCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS---DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS---~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~ 384 (1491)
.|.+||...... ..+..+...+.+.+|+||++ .|+..+ .+..|.+|++.+++......
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~---~la~~s~~~g~~~i~i~dl~~G~~~~l~~--------------- 240 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGS---KLAYVTFESGRSALVIQTLANGAVRQVAS--------------- 240 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCC---EEEEEEecCCCcEEEEEECCCCCeEEccC---------------
Confidence 699999865444 44455677899999999997 565443 24568999998775322111
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEe-cCCc--eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVTG-SSDT--LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~LasG-s~DG--~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s 461 (1491)
....+..++|+|||+.|+.. +.+| .|++||+.++ .+..+..+...+....|+|++
T Consensus 241 ------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg----------~~~~lt~~~~~~~~~~wSPDG------ 298 (429)
T PRK03629 241 ------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG----------QIRQVTDGRSNNTEPTWFPDS------ 298 (429)
T ss_pred ------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC----------CEEEccCCCCCcCceEECCCC------
Confidence 11223457999999988765 4344 5888998653 223344445567889999986
Q ss_pred cccCCCCCCCccccccccCCCeEEEEeC-CCeEEEE--ecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 462 LADSSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIW--IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~LaSgS~-DGtIrIW--Dl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
+.|+..+. +|...|| |+.++. ...+..
T Consensus 299 --------------------~~I~f~s~~~g~~~Iy~~d~~~g~------------------------------~~~lt~ 328 (429)
T PRK03629 299 --------------------QNLAYTSDQAGRPQVYKVNINGGA------------------------------PQRITW 328 (429)
T ss_pred --------------------CEEEEEeCCCCCceEEEEECCCCC------------------------------eEEeec
Confidence 45555544 4555555 443311 111222
Q ss_pred CCCCeeEEEEcCCCCEEEEEecc---ceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc---EEEEeC
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK---TIVWDI 612 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~D---G~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGt---IrIWDl 612 (1491)
........+|+|||++|+..+.+ ..|++||+.++... .+... .......|+| ++++|+.++.++. +.+|++
T Consensus 329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 329 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAP-NGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECC-CCCEEEEEEcCCCceEEEEEEC
Confidence 22334568899999999886543 35899999888654 34322 2234678999 5555656665653 677788
Q ss_pred CCCceEEEEeeCCcceEEEEEcC
Q 000454 613 WEGIPIRIYEISRFRLVDGKFSP 635 (1491)
Q Consensus 613 ~tGk~l~~l~~h~~~VtslafSP 635 (1491)
+|.....+..+.+.+...+|+|
T Consensus 406 -~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 406 -DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred -CCCCeEECccCCCCcCCcccCC
Confidence 6777777777778888999997
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-10 Score=138.16 Aligned_cols=353 Identities=14% Similarity=0.206 Sum_probs=217.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeC-----------CCcEE
Q 000454 287 DITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-----------DGTCR 355 (1491)
Q Consensus 287 ~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~-----------DGtVr 355 (1491)
.-+-+.|||-|+||+|--..| |.+|--.+...++.+. |.+ |.-+.|||..+ +|++-+. ...|+
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~Ek---YLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEK---YLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccc---eEEEecCCccccCcccCCCceEE
Confidence 456789999999999987776 8999877766676665 544 88999999987 8888653 25699
Q ss_pred EEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCce
Q 000454 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435 (1491)
Q Consensus 356 IWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~ 435 (1491)
|||+.+|.....+.... .....-.-+.||.|++++|.-.. ..|.||+..+ ...
T Consensus 286 IWDI~tG~lkrsF~~~~-----------------~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps---------f~l 338 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIK-----------------SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS---------FML 338 (698)
T ss_pred EEEccccchhcceeccC-----------------CCccccceEEeccCCceeEEecc-ceEEEEecCc---------eee
Confidence 99999999877764321 11112335789999999998776 5688998743 112
Q ss_pred eeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccc
Q 000454 436 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515 (1491)
Q Consensus 436 i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~ 515 (1491)
+..-.-....|....|+|.+ ..|..|-..+....
T Consensus 339 ld~Kslki~gIr~FswsP~~-----------------------------------~llAYwtpe~~~~p----------- 372 (698)
T KOG2314|consen 339 LDKKSLKISGIRDFSWSPTS-----------------------------------NLLAYWTPETNNIP----------- 372 (698)
T ss_pred ecccccCCccccCcccCCCc-----------------------------------ceEEEEcccccCCc-----------
Confidence 22222234567778888864 12233433321100
Q ss_pred cCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe----------ccceEEEEECCCCceEEEEeCCCCCe
Q 000454 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI----------MDCRICVWNAADGSLVHSLTGHTEST 585 (1491)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs----------~DG~IrIWDl~tgkll~tL~gHs~~V 585 (1491)
........+....+....-+.-.=..+-|-.+|.+|++-. .-..+.|+.++..........-...|
T Consensus 373 ----arvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 373 ----ARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred ----ceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 0000011111122222112222223466778888887632 11235566655443322222345678
Q ss_pred EEEEEecCCCcEEEEEeCC--CcEEEEeCCC-C---ceEEEEeeCCcceEEEEEcCCCCEEEEE---eCCCcEEEEECCC
Q 000454 586 YVLDVHPFNPRIAMSAGYD--GKTIVWDIWE-G---IPIRIYEISRFRLVDGKFSPDGASIILS---DDVGQLYILNTGQ 656 (1491)
Q Consensus 586 tsLafSPdd~~lLaSgS~D--GtIrIWDl~t-G---k~l~~l~~h~~~VtslafSPDG~~LAsg---s~DG~I~IWdl~t 656 (1491)
...+|-|.+.++.+..+.+ .++.+|-+.+ + .++..+. ....+.+.|||.|++++++ +..|.+.++|+.-
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 8999999888877666654 5788888873 2 3444443 2456789999999999876 4567788887632
Q ss_pred CcccccccceeeecCCCcceEEccCCCEEEccccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCe
Q 000454 657 GESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLK 736 (1491)
Q Consensus 657 G~~~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~ 736 (1491)
. ++. .+.. |+ ...+..+.|.|.|+|
T Consensus 527 a--------------~~k-------------~~~~-------------------~e---------h~~at~veWDPtGRY 551 (698)
T KOG2314|consen 527 A--------------DLK-------------DTAS-------------------PE---------HFAATEVEWDPTGRY 551 (698)
T ss_pred h--------------hhh-------------hccC-------------------cc---------ccccccceECCCCCE
Confidence 0 000 0111 11 112335899999999
Q ss_pred EEEee---CCCCCCcEEeccCCCccccccCCcccccccccccCCcCC
Q 000454 737 LAVGP---DFSLDQGYQLQPLADLDVMIDPLPEFIDVMDWEPENEVQ 780 (1491)
Q Consensus 737 LAvg~---d~s~d~~v~lw~~~~~~~lieplp~~i~~~~W~P~~ev~ 780 (1491)
++++. .+.+|..++||+.......-.-+..+.. +.|.|.++.+
T Consensus 552 vvT~ss~wrhk~d~GYri~tfqGrll~~~~i~~f~q-F~WRPRPps~ 597 (698)
T KOG2314|consen 552 VVTSSSSWRHKVDNGYRIFTFQGRLLKEDIIDRFKQ-FLWRPRPPSL 597 (698)
T ss_pred EEEeeehhhhccccceEEEEeecHHHHHHHHHHHHh-hccCCCCCcc
Confidence 99985 5678889999999644322222334443 7899999964
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=137.19 Aligned_cols=208 Identities=21% Similarity=0.284 Sum_probs=170.1
Q ss_pred CcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCC
Q 000454 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1491)
Q Consensus 392 ~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1491)
...|+|.+|++|+..+|++.....|.||..... +......++..|...|++|.|+|..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~------~~w~~~htls~Hd~~vtgvdWap~s---------------- 67 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA------DLWEPAHTLSEHDKIVTGVDWAPKS---------------- 67 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCC------CCceeceehhhhCcceeEEeecCCC----------------
Confidence 457999999999999999999999999998653 3467889999999999999999975
Q ss_pred ccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCC
Q 000454 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551 (1491)
Q Consensus 472 ~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPD 551 (1491)
+.|++|+.|...++|....+ ..| .+...+..++...++|.|+|.
T Consensus 68 ----------nrIvtcs~drnayVw~~~~~------~~W--------------------kptlvLlRiNrAAt~V~WsP~ 111 (361)
T KOG1523|consen 68 ----------NRIVTCSHDRNAYVWTQPSG------GTW--------------------KPTLVLLRINRAATCVKWSPK 111 (361)
T ss_pred ----------CceeEccCCCCccccccCCC------Cee--------------------ccceeEEEeccceeeEeecCc
Confidence 69999999999999976421 223 234456667889999999999
Q ss_pred CCEEEEEeccceEEEEECCCCceE----EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC-----C--------
Q 000454 552 NRFVLAAIMDCRICVWNAADGSLV----HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW-----E-------- 614 (1491)
Q Consensus 552 G~~LaSGs~DG~IrIWDl~tgkll----~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~-----t-------- 614 (1491)
+..||+|+....|.||-++...-- +.-+.+...|+++.||| ++-+|++|+.|+..+|+..- +
T Consensus 112 enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWg 190 (361)
T KOG1523|consen 112 ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWG 190 (361)
T ss_pred CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCc
Confidence 999999999999999987653322 22345677899999999 88899999999999999641 1
Q ss_pred -----CceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 000454 615 -----GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 658 (1491)
Q Consensus 615 -----Gk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~ 658 (1491)
|+++..+....+.|..+.|+|+|..|+-.+.|+.|.+-|.....
T Consensus 191 sk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 191 SKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 34455554456789999999999999999999999999976654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-10 Score=143.97 Aligned_cols=235 Identities=15% Similarity=0.050 Sum_probs=150.6
Q ss_pred CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeC---CCcEEEEccCCCCccceeecCCCCCcccCCCCC
Q 000454 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~---DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~ 383 (1491)
..|.+||.. +.....+..+...+.+.+|+|+++ .|+.++. ...|.+||+.+++.....
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~---~la~~s~~~~~~~l~~~dl~~g~~~~l~--------------- 244 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGK---KLAYVSFERGRSAIYVQDLATGQRELVA--------------- 244 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCC---EEEEEecCCCCcEEEEEECCCCCEEEec---------------
Confidence 469999985 444555666778899999999998 6666653 346999999877532211
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEE-ecCCc--eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccc
Q 000454 384 PSSSAGPQSHQIFCCAFNANGTVFVT-GSSDT--LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 384 ~~~s~~~h~~~V~slafSPDG~~Las-Gs~DG--~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
.......+++|+|||+.|+. .+.+| .|++|++.++ .+..+..+......+.|+|++
T Consensus 245 ------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g----------~~~~lt~~~~~~~~~~~spDG----- 303 (433)
T PRK04922 245 ------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR----------QLTRLTNHFGIDTEPTWAPDG----- 303 (433)
T ss_pred ------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC----------CeEECccCCCCccceEECCCC-----
Confidence 01223457899999987764 44444 5999998653 233444555556678999986
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEe-CCCe--EEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceecc
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCS-RDGS--AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS-~DGt--IrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1491)
..|+.++ .+|. |.++++.+++ ...+.
T Consensus 304 ---------------------~~l~f~sd~~g~~~iy~~dl~~g~------------------------------~~~lt 332 (433)
T PRK04922 304 ---------------------KSIYFTSDRGGRPQIYRVAASGGS------------------------------AERLT 332 (433)
T ss_pred ---------------------CEEEEEECCCCCceEEEEECCCCC------------------------------eEEee
Confidence 4555544 4555 4445544321 11111
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeccc---eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEeC
Q 000454 538 PTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD--GKTIVWDI 612 (1491)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~DG---~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~D--GtIrIWDl 612 (1491)
........++|+|||++|+..+.++ .|++||+.+++.. .+. +........|+|++..++++.... +.|.+|++
T Consensus 333 ~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 333 FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 1122344689999999998865443 6999999888765 333 222345679999555555554433 45788888
Q ss_pred CCCceEEEEeeCCcceEEEEEcC
Q 000454 613 WEGIPIRIYEISRFRLVDGKFSP 635 (1491)
Q Consensus 613 ~tGk~l~~l~~h~~~VtslafSP 635 (1491)
+|.....+..+.+.+...+|+|
T Consensus 411 -~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 411 -DGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCCceEEcccCCCCCCCCccCC
Confidence 4555666665566777888887
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-10 Score=127.56 Aligned_cols=177 Identities=17% Similarity=0.252 Sum_probs=130.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC----
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG-HEGDITDLAVSSNN-ALVASASNDCIIRVWRLPDG---- 317 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~g-H~~~VtsLafSPDG-~lLASGS~DGtIrVWDl~tg---- 317 (1491)
..+..++|++.-..+|++..|-.|+||+-.. ++...++. -...|+|++|-|.+ +-|+.|+.. -|.||.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 3567788988766778889999999999876 55555552 45689999999954 567777765 5999976421
Q ss_pred Cc--------ee--eeccCCCceEEEEecCCCCceEEEEEEeC-CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 318 LP--------IS--VLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 318 k~--------i~--~L~gHs~~VtsLaFSPdg~s~~~LaSgS~-DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
.. .. ...+| ..|++|+|.+|+. .|++++. |..|.|||..++..+....
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt---~l~tAS~gsssi~iWdpdtg~~~pL~~----------------- 235 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT---ILVTASFGSSSIMIWDPDTGQKIPLIP----------------- 235 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCC---EEeecccCcceEEEEcCCCCCcccccc-----------------
Confidence 11 11 22344 6899999999997 7777764 5789999999998765542
Q ss_pred CCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCc
Q 000454 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455 (1491)
Q Consensus 387 s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg 455 (1491)
...+.+.-+.|||||.+|++++-|+..++|.... ......... -.+.|..-+|+|+|
T Consensus 236 ---~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q--------~wt~erw~l-gsgrvqtacWspcG 292 (445)
T KOG2139|consen 236 ---KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ--------SWTKERWIL-GSGRVQTACWSPCG 292 (445)
T ss_pred ---cCCCceeeEEEcCCCCEEEEecccceeeeehhcc--------cceecceec-cCCceeeeeecCCC
Confidence 1455688999999999999999999999996532 122222222 34489999999998
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.3e-10 Score=131.04 Aligned_cols=342 Identities=13% Similarity=0.128 Sum_probs=214.5
Q ss_pred ccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC---
Q 000454 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDC--- 307 (1491)
Q Consensus 231 ~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DG--- 307 (1491)
+....-.++..-.-++..++|||.|++|++....| |.+|....+..+..+. ...|..+.|+|.++||.+-+..+
T Consensus 20 ~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~ 96 (561)
T COG5354 20 QSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIE 96 (561)
T ss_pred ccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccC
Confidence 33333444444667899999999999999887655 8999988777666665 35699999999999999976543
Q ss_pred ------------eEEEEECCCCCceeeeccCCCc--eE-EEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCC
Q 000454 308 ------------IIRVWRLPDGLPISVLRGHTAA--VT-AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPR 372 (1491)
Q Consensus 308 ------------tIrVWDl~tgk~i~~L~gHs~~--Vt-sLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~ 372 (1491)
.+.|||+.+|..+..+.+-..+ .+ -+.|+-+.. +++-. ....+.|+++ ++.....-
T Consensus 97 pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~---y~ARv-v~~sl~i~e~-t~n~~~~p---- 167 (561)
T COG5354 97 PEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK---YVARV-VGSSLYIHEI-TDNIEEHP---- 167 (561)
T ss_pred hhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecch---hhhhh-ccCeEEEEec-CCccccCc----
Confidence 4999999999999988876655 55 678888876 33333 3345899997 44322110
Q ss_pred CCCcccCCCCCCCCCCCCCCcceEEEEECCCC--CEEEE-----ecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCC
Q 000454 373 PSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG--TVFVT-----GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND 445 (1491)
Q Consensus 373 ~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG--~~Las-----Gs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~ 445 (1491)
........|...+|+|.| ..||. ++..+.++||.+... ..+....-....
T Consensus 168 --------------~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~---------s~l~tk~lfk~~ 224 (561)
T COG5354 168 --------------FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN---------SVLVTKNLFKVS 224 (561)
T ss_pred --------------hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC---------CeeeeeeeEeec
Confidence 001123568888888864 33443 456788888888532 122211111122
Q ss_pred ceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCC
Q 000454 446 VNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525 (1491)
Q Consensus 446 V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~ 525 (1491)
-..+.|.+.|......+.... +...+++ ....+.|+++....
T Consensus 225 ~~qLkW~~~g~~ll~l~~t~~------ksnKsyf---------gesnLyl~~~~e~~----------------------- 266 (561)
T COG5354 225 GVQLKWQVLGKYLLVLVMTHT------KSNKSYF---------GESNLYLLRITERS----------------------- 266 (561)
T ss_pred ccEEEEecCCceEEEEEEEee------eccccee---------ccceEEEEeecccc-----------------------
Confidence 234556555411100000000 0000000 12344555544211
Q ss_pred CCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE--eccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC
Q 000454 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA--IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY 603 (1491)
Q Consensus 526 ~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG--s~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~ 603 (1491)
+.......++|..++|.|.++.+++. -++..+.++|+... +...+ ....-+.+.|+| ..++++.++.
T Consensus 267 -------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp-~~r~il~agF 335 (561)
T COG5354 267 -------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSP-HERYILFAGF 335 (561)
T ss_pred -------cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccC-cccEEEEecC
Confidence 11112446789999999999887764 47888999999755 44443 334446688999 6677777775
Q ss_pred C---CcEEEEeCCCCceEE-EEeeCCcceEEEEEcCCCCEEEEEe------CCCcEEEEECCCCc
Q 000454 604 D---GKTIVWDIWEGIPIR-IYEISRFRLVDGKFSPDGASIILSD------DVGQLYILNTGQGE 658 (1491)
Q Consensus 604 D---GtIrIWDl~tGk~l~-~l~~h~~~VtslafSPDG~~LAsgs------~DG~I~IWdl~tG~ 658 (1491)
| |.|-|||......+. .+.+. ...-+.|||||+++.+.. .|..|.||++....
T Consensus 336 ~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 336 DNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 5 689999997654444 55533 345578999999988753 37889999986543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-10 Score=140.60 Aligned_cols=234 Identities=14% Similarity=0.062 Sum_probs=154.2
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCCceeeeccCCCceEEEEecCCCCc
Q 000454 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN---DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1491)
Q Consensus 265 GtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~---DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s 341 (1491)
..|.+||.. |.....+..|...|.+.+|+|||+.|+..+. +..|.+||+.++... .+..+.+.+.+.+|+|+++
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~- 258 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR- 258 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC-
Confidence 479999985 5555667778889999999999999988764 468999999888653 4455667788999999997
Q ss_pred eEEEEEEeCCCc--EEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-Cc--eE
Q 000454 342 VYQLLSSSDDGT--CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--LA 416 (1491)
Q Consensus 342 ~~~LaSgS~DGt--VrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-DG--~I 416 (1491)
.++++.+.+|. |.+||+.++.... + ..+.......+|+|||+.|+..+. +| .|
T Consensus 259 -~la~~~~~~g~~~Iy~~d~~~~~~~~-L--------------------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~I 316 (435)
T PRK05137 259 -KVVMSLSQGGNTDIYTMDLRSGTTTR-L--------------------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQL 316 (435)
T ss_pred -EEEEEEecCCCceEEEEECCCCceEE-c--------------------cCCCCccCceeEcCCCCEEEEEECCCCCCeE
Confidence 23445666665 6777887765322 1 112233556899999998887664 33 57
Q ss_pred EEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCC---CeE
Q 000454 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD---GSA 493 (1491)
Q Consensus 417 rVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~D---GtI 493 (1491)
++|++..+ ....+..+...+....|+|++ +.|+..+.+ ..|
T Consensus 317 y~~d~~g~----------~~~~lt~~~~~~~~~~~SpdG--------------------------~~ia~~~~~~~~~~i 360 (435)
T PRK05137 317 YVMNADGS----------NPRRISFGGGRYSTPVWSPRG--------------------------DLIAFTKQGGGQFSI 360 (435)
T ss_pred EEEECCCC----------CeEEeecCCCcccCeEECCCC--------------------------CEEEEEEcCCCceEE
Confidence 77787532 122333344556678899986 455554433 357
Q ss_pred EEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc------ceEEEE
Q 000454 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD------CRICVW 567 (1491)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D------G~IrIW 567 (1491)
.+||+.... ... ......+..+.|+|||++|+..+.+ ..|+++
T Consensus 361 ~~~d~~~~~------------------------------~~~-lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 361 GVMKPDGSG------------------------------ERI-LTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred EEEECCCCc------------------------------eEe-ccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 777765321 000 1111235568899999998876543 368888
Q ss_pred ECCCCceEEEEeCCCCCeEEEEEec
Q 000454 568 NAADGSLVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 568 Dl~tgkll~tL~gHs~~VtsLafSP 592 (1491)
|+..+.. ..+. ..+.+...+|+|
T Consensus 410 dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 410 DLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred ECCCCce-EEcc-CCCCccCcccCC
Confidence 9866554 4444 244567778877
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-10 Score=142.88 Aligned_cols=235 Identities=14% Similarity=0.050 Sum_probs=153.9
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCCceeeeccCCCceEEEEecCCCCc
Q 000454 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1491)
Q Consensus 265 GtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D---GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s 341 (1491)
..|.|||.. +.....+..+...+.+.+|+|||+.|+.++.. ..|.+|++.+++... +..+.+...+++|+|+++
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~- 260 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGR- 260 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCC-
Confidence 479999986 44555666678889999999999999988743 469999998876543 333455566889999997
Q ss_pred eEEEEEEeCCC--cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-Cce--E
Q 000454 342 VYQLLSSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTL--A 416 (1491)
Q Consensus 342 ~~~LaSgS~DG--tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-DG~--I 416 (1491)
.++++.+.+| .|.+||+.++...... .+.......+|+|||+.|+.++. +|. |
T Consensus 261 -~l~~~~s~~g~~~Iy~~d~~~g~~~~lt---------------------~~~~~~~~~~~spDG~~l~f~sd~~g~~~i 318 (433)
T PRK04922 261 -RLALTLSRDGNPEIYVMDLGSRQLTRLT---------------------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQI 318 (433)
T ss_pred -EEEEEEeCCCCceEEEEECCCCCeEECc---------------------cCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 2334555555 5899999877632211 12223456799999998887664 444 5
Q ss_pred EEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCC---eE
Q 000454 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SA 493 (1491)
Q Consensus 417 rVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG---tI 493 (1491)
+++++.++. ...+..+......++|+|++ +.|+..+.++ .|
T Consensus 319 y~~dl~~g~----------~~~lt~~g~~~~~~~~SpDG--------------------------~~Ia~~~~~~~~~~I 362 (433)
T PRK04922 319 YRVAASGGS----------AERLTFQGNYNARASVSPDG--------------------------KKIAMVHGSGGQYRI 362 (433)
T ss_pred EEEECCCCC----------eEEeecCCCCccCEEECCCC--------------------------CEEEEEECCCCceeE
Confidence 666664321 12222233345568999986 4555544332 58
Q ss_pred EEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc---ceEEEEECC
Q 000454 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAA 570 (1491)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D---G~IrIWDl~ 570 (1491)
.+||+.+++.. .+. +........|+|||++|+..+.+ +.|+++++.
T Consensus 363 ~v~d~~~g~~~------------------------------~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 363 AVMDLSTGSVR------------------------------TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred EEEECCCCCeE------------------------------ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 89988753310 011 11123346899999998877653 468888884
Q ss_pred CCceEEEEeCCCCCeEEEEEec
Q 000454 571 DGSLVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 571 tgkll~tL~gHs~~VtsLafSP 592 (1491)
|.....+..+.+.+...+|+|
T Consensus 412 -g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 -GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCceEEcccCCCCCCCCccCC
Confidence 556666766667778888887
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-10 Score=140.86 Aligned_cols=236 Identities=15% Similarity=0.107 Sum_probs=153.0
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCCceeeeccCCCceEEEEecCCCCc
Q 000454 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1491)
Q Consensus 265 GtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D---GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s 341 (1491)
..|.+||.. |.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+||++
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~- 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR- 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC-
Confidence 468888874 55555666778899999999999999887653 459999999887543 333445677899999997
Q ss_pred eEEEE-EEeCCCcEEEEccC--CCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-CceEE
Q 000454 342 VYQLL-SSSDDGTCRIWDAR--YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLAR 417 (1491)
Q Consensus 342 ~~~La-SgS~DGtVrIWDl~--tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-DG~Ir 417 (1491)
.|+ +.+.+|...||.+. ++. ...+ ..+........|+|||+.|+..+. +|...
T Consensus 253 --~la~~~~~~g~~~Iy~~d~~~~~-~~~l--------------------t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~ 309 (427)
T PRK02889 253 --TLAVALSRDGNSQIYTVNADGSG-LRRL--------------------TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQ 309 (427)
T ss_pred --EEEEEEccCCCceEEEEECCCCC-cEEC--------------------CCCCCCCcCeEEcCCCCEEEEEecCCCCcE
Confidence 454 66778887777553 332 1111 112223456789999998876554 46666
Q ss_pred EEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCC---eEE
Q 000454 418 VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SAI 494 (1491)
Q Consensus 418 VWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG---tIr 494 (1491)
||.+.... . ....+..+........|+|++ +.|+..+.++ .|.
T Consensus 310 Iy~~~~~~-------g-~~~~lt~~g~~~~~~~~SpDG--------------------------~~Ia~~s~~~g~~~I~ 355 (427)
T PRK02889 310 IYRMPASG-------G-AAQRVTFTGSYNTSPRISPDG--------------------------KLLAYISRVGGAFKLY 355 (427)
T ss_pred EEEEECCC-------C-ceEEEecCCCCcCceEECCCC--------------------------CEEEEEEccCCcEEEE
Confidence 66653210 1 111122222334467888886 5666655543 688
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccc---eEEEEECCC
Q 000454 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAAD 571 (1491)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG---~IrIWDl~t 571 (1491)
+||+.+++. ..+.. ......+.|+|||++|+.++.++ .+++.++ +
T Consensus 356 v~d~~~g~~------------------------------~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~ 403 (427)
T PRK02889 356 VQDLATGQV------------------------------TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-D 403 (427)
T ss_pred EEECCCCCe------------------------------EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-C
Confidence 999876331 01111 11234578999999998877544 4666676 5
Q ss_pred CceEEEEeCCCCCeEEEEEec
Q 000454 572 GSLVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 572 gkll~tL~gHs~~VtsLafSP 592 (1491)
|.....+..+.+.+...+|+|
T Consensus 404 g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 404 GRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CCceEEeecCCCCCCCCccCC
Confidence 777777777778888889988
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.2e-10 Score=139.80 Aligned_cols=240 Identities=14% Similarity=0.078 Sum_probs=151.6
Q ss_pred CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCC---CcEEEEccCCCCccceeecCCCCCcccCCCCC
Q 000454 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D---GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~ 383 (1491)
..|.+||. +|.....+..+...+.+.+|+|+++ .|+.++.+ ..|.+||+.+++.....
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~---~la~~s~~~~~~~I~~~dl~~g~~~~l~--------------- 236 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGT---KLAYVSFESKKPVVYVHDLATGRRRVVA--------------- 236 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCC---EEEEEEccCCCcEEEEEECCCCCEEEee---------------
Confidence 46777786 4555556666788899999999997 66665532 35999999887643221
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEE-ecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccccc
Q 000454 384 PSSSAGPQSHQIFCCAFNANGTVFVT-GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1491)
Q Consensus 384 ~~~s~~~h~~~V~slafSPDG~~Las-Gs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~ 462 (1491)
.....+.+.+|+|||+.|+. .+.+|...||.+... ......+..+...+....|+|++
T Consensus 237 ------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~--------~~~~~~lt~~~~~~~~~~wSpDG------- 295 (427)
T PRK02889 237 ------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD--------GSGLRRLTQSSGIDTEPFFSPDG------- 295 (427)
T ss_pred ------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECC--------CCCcEECCCCCCCCcCeEEcCCC-------
Confidence 01233567899999998864 567777666665321 11233445555556778899987
Q ss_pred ccCCCCCCCccccccccCCCeEEEEe-CCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCC
Q 000454 463 ADSSKEDSTPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 541 (1491)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~LaSgS-~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~ 541 (1491)
..|+..+ .+|...||.+.... .....+.....
T Consensus 296 -------------------~~l~f~s~~~g~~~Iy~~~~~~----------------------------g~~~~lt~~g~ 328 (427)
T PRK02889 296 -------------------RSIYFTSDRGGAPQIYRMPASG----------------------------GAAQRVTFTGS 328 (427)
T ss_pred -------------------CEEEEEecCCCCcEEEEEECCC----------------------------CceEEEecCCC
Confidence 4454444 45677777654211 00111111112
Q ss_pred CeeEEEEcCCCCEEEEEeccc---eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEeCCCCc
Q 000454 542 GVNMIVWSLDNRFVLAAIMDC---RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK--TIVWDIWEGI 616 (1491)
Q Consensus 542 ~VtsVafSPDG~~LaSGs~DG---~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGt--IrIWDl~tGk 616 (1491)
.....+|||||++|+..+.++ .|++||+.+++......+ .....+.|+|++..++++....|. +.+.++ +|.
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~ 405 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGR 405 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCC
Confidence 234578999999999877554 699999988875543322 234678999965555555544443 555566 576
Q ss_pred eEEEEeeCCcceEEEEEcCC
Q 000454 617 PIRIYEISRFRLVDGKFSPD 636 (1491)
Q Consensus 617 ~l~~l~~h~~~VtslafSPD 636 (1491)
....+..+.+.+...+|+|-
T Consensus 406 ~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 406 IKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ceEEeecCCCCCCCCccCCC
Confidence 66667656667777888874
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=133.03 Aligned_cols=264 Identities=13% Similarity=0.170 Sum_probs=182.4
Q ss_pred CCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCCceee------eccCCCceEEEEecCCCCceEEEEEEeCCCcEEE
Q 000454 285 EGDITDLAVSSNNA--LVASASNDCIIRVWRLPDGLPISV------LRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 285 ~~~VtsLafSPDG~--lLASGS~DGtIrVWDl~tgk~i~~------L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrI 356 (1491)
...|..++|.-+++ .|...+.+..+....+....+... ....++.|..++.... .|++|-.+|.+.+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg-----~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG-----TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC-----EEEEEecCCcEEE
Confidence 45677777776554 455554666677777665544433 3345667777776543 7999999999999
Q ss_pred EccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC-CEEEEecCC--ceEEEEeCCCCCCCCCCCCC
Q 000454 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-TVFVTGSSD--TLARVWNACKPNTDDSDQPN 433 (1491)
Q Consensus 357 WDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-~~LasGs~D--G~IrVWDl~t~~~~~s~~~~ 433 (1491)
|....+........ .-.....+..+.-++.. .++|+|+.. ..+.|||+....
T Consensus 130 ~~~k~~d~hss~l~-----------------~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-------- 184 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLI-----------------KLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK-------- 184 (412)
T ss_pred EeccCCccccccce-----------------eeecCCceeeeccCCCCCceEecCchhcccceeeeecccce--------
Confidence 99875542211000 00112344555555543 456669888 889999996531
Q ss_pred ceeeeecCC-----------CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCC
Q 000454 434 HEIDVLSGH-----------ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1491)
Q Consensus 434 ~~i~~l~gH-----------~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k 502 (1491)
..+.+. .-+++.+.|.+.. .+..|++++.-+.+++||++.++
T Consensus 185 ---qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~------------------------~~~~fat~T~~hqvR~YDt~~qR 237 (412)
T KOG3881|consen 185 ---QIWSAKNVPNDRLGLRVPVWITDIRFLEGS------------------------PNYKFATITRYHQVRLYDTRHQR 237 (412)
T ss_pred ---eeeeccCCCCccccceeeeeeccceecCCC------------------------CCceEEEEecceeEEEecCcccC
Confidence 111111 1234455555431 14689999999999999999654
Q ss_pred CCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEE-EeCC
Q 000454 503 SHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS-LTGH 581 (1491)
Q Consensus 503 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~t-L~gH 581 (1491)
.|+..+.-...+|+++...|+|++|++|..-+.+..||++.++++.. +.+-
T Consensus 238 ----------------------------RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 238 ----------------------------RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred ----------------------------cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence 34444445567899999999999999999999999999999998876 8999
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcC
Q 000454 582 TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSP 635 (1491)
Q Consensus 582 s~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSP 635 (1491)
.+.|.+|..|| ...+|++||-|..|+|+|+.+.+++.... -...+++|.+.+
T Consensus 290 tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~ 341 (412)
T KOG3881|consen 290 TGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD 341 (412)
T ss_pred cCCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence 99999999999 77899999999999999999877665433 123455555543
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4e-09 Score=118.63 Aligned_cols=239 Identities=13% Similarity=0.194 Sum_probs=155.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CC------CeEEEEECCCCC
Q 000454 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS-ND------CIIRVWRLPDGL 318 (1491)
Q Consensus 246 Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS-~D------GtIrVWDl~tgk 318 (1491)
...++|..|..-++.|.++| .+||+++-.+.......+.+.+.-+..---.++||-.+ .. ..|.|||=...+
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 44599999999999988777 89999876444333332333322221111234555433 22 469999966667
Q ss_pred ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCC-CCccceeecCCCCCcccCCCCCCCCCCCCCCcceEE
Q 000454 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY-SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 397 (1491)
Q Consensus 319 ~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~t-g~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~s 397 (1491)
++..+. ...+|.+|.+.++ .|++.- .+.|.||...+ .+.+..+.
T Consensus 87 ~i~el~-f~~~I~~V~l~r~-----riVvvl-~~~I~VytF~~n~k~l~~~e---------------------------- 131 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRRD-----RIVVVL-ENKIYVYTFPDNPKLLHVIE---------------------------- 131 (346)
T ss_pred EEEEEE-eccceeeEEEcCC-----eEEEEe-cCeEEEEEcCCChhheeeee----------------------------
Confidence 777776 6789999999997 455554 46799998763 22222221
Q ss_pred EEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCcccccc
Q 000454 398 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 477 (1491)
Q Consensus 398 lafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~ 477 (1491)
..-+|.| |.+ ... ...-..++| |
T Consensus 132 t~~NPkG--lC~---------~~~---------------------~~~k~~Laf-P------------------------ 154 (346)
T KOG2111|consen 132 TRSNPKG--LCS---------LCP---------------------TSNKSLLAF-P------------------------ 154 (346)
T ss_pred cccCCCc--eEe---------ecC---------------------CCCceEEEc-C------------------------
Confidence 1112333 110 000 000001111 1
Q ss_pred ccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE
Q 000454 478 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1491)
Q Consensus 478 ~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS 557 (1491)
|-.-|.|+|-|+...+ ..+...+..|...|.|++++.+|..||+
T Consensus 155 ---------g~k~GqvQi~dL~~~~---------------------------~~~p~~I~AH~s~Iacv~Ln~~Gt~vAT 198 (346)
T KOG2111|consen 155 ---------GFKTGQVQIVDLASTK---------------------------PNAPSIINAHDSDIACVALNLQGTLVAT 198 (346)
T ss_pred ---------CCccceEEEEEhhhcC---------------------------cCCceEEEcccCceeEEEEcCCccEEEE
Confidence 1123666776666422 0123456778999999999999999999
Q ss_pred Eeccce-EEEEECCCCceEEEEeC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 000454 558 AIMDCR-ICVWNAADGSLVHSLTG--HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1491)
Q Consensus 558 Gs~DG~-IrIWDl~tgkll~tL~g--Hs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t 614 (1491)
++..|+ |+|||..+|+++..++- ....|++|+|+| +..+|+.+|..|+|.|+.+..
T Consensus 199 aStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 199 ASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 999997 89999999999999863 234799999999 788999999999999998865
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.2e-10 Score=134.81 Aligned_cols=454 Identities=15% Similarity=0.175 Sum_probs=266.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC------------CEEEEEECCCeEE
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN------------ALVASASNDCIIR 310 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG------------~lLASGS~DGtIr 310 (1491)
...-.++.|+|.| +||-|+. ..|.|-|..+.+.+.++.-|...|+.|.|.|-. -+||++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3345678899887 5777664 679999999999999999999999999998721 2678888889999
Q ss_pred EEECCCCCceeeeccCCCceEEEEecCCCCce-EEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 311 VWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV-YQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 311 VWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~-~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
|||+..+..+..+..|..+|..++|-+..... ..|++-....+|.+|+..+|+......
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-------------------- 152 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-------------------- 152 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc--------------------
Confidence 99999999998999999999999998754322 467777888899999999998665542
Q ss_pred CCCcceEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCC-------ceEEEEccCccccccc
Q 000454 390 PQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND-------VNYVQFSGCAVASRFS 461 (1491)
Q Consensus 390 ~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~-------V~sVafSpdg~as~~s 461 (1491)
.......|+.+.| |.+.|..-+..|.|.+.+.-... ....+++.+.....|... ++....+... ++..-
T Consensus 153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s--ep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~-~sa~f 229 (1062)
T KOG1912|consen 153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLS--EPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP-ASAYF 229 (1062)
T ss_pred cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCC--CCCCCceeEEEecCccchhhhhhhhhccccccCCC-cchhH
Confidence 1334566788888 67778887888888777763211 222344444444444331 0000000000 00000
Q ss_pred cccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCC
Q 000454 462 LADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 541 (1491)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~ 541 (1491)
+ .......+...| ..++-...-..+.++|+.-.. ++..+.-..+
T Consensus 230 i----ty~a~faf~p~~---rn~lfi~~prellv~dle~~~-----------------------------~l~vvpier~ 273 (1062)
T KOG1912|consen 230 I----TYCAQFAFSPHW---RNILFITFPRELLVFDLEYEC-----------------------------CLAVVPIERG 273 (1062)
T ss_pred H----HHHHhhhcChhh---hceEEEEeccceEEEcchhhc-----------------------------eeEEEEeccC
Confidence 0 000000011111 223333445667788776422 1111222233
Q ss_pred CeeEEEEcCCCC--EEEEEeccceEEEEECCC----------------CceEEEEeCCC-CCeEEEEEecCCCcEEEEEe
Q 000454 542 GVNMIVWSLDNR--FVLAAIMDCRICVWNAAD----------------GSLVHSLTGHT-ESTYVLDVHPFNPRIAMSAG 602 (1491)
Q Consensus 542 ~VtsVafSPDG~--~LaSGs~DG~IrIWDl~t----------------gkll~tL~gHs-~~VtsLafSPdd~~lLaSgS 602 (1491)
.+.-+.|-|+++ .|++...||.+.||-.+. +..++.+..-. -.+...+..|..+..++.--
T Consensus 274 ~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~ 353 (1062)
T KOG1912|consen 274 GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLY 353 (1062)
T ss_pred CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhh
Confidence 344456666654 688999999999997654 22233222111 12233344564455444445
Q ss_pred CCCcEEEEeCCCCceEEEEe-------------------------------eCCcceEEEEEc-----------CCC---
Q 000454 603 YDGKTIVWDIWEGIPIRIYE-------------------------------ISRFRLVDGKFS-----------PDG--- 637 (1491)
Q Consensus 603 ~DGtIrIWDl~tGk~l~~l~-------------------------------~h~~~VtslafS-----------PDG--- 637 (1491)
.+|.+.+|.+.+|+.-.... .|..+.++.... |.|
T Consensus 354 s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~ 433 (1062)
T KOG1912|consen 354 SSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTP 433 (1062)
T ss_pred hcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCcc
Confidence 67888999887654321110 122223322221 222
Q ss_pred ----CEEEEEeCCCcEEEEECCCCccccc------ccceeeecCCCcceEEcc------CCCEEEccccccCccccCCCc
Q 000454 638 ----ASIILSDDVGQLYILNTGQGESQKD------AKYDQFFLGDYRPLVQDT------YGNVLDQETQLAPHRRNLQDP 701 (1491)
Q Consensus 638 ----~~LAsgs~DG~I~IWdl~tG~~~~~------~~~~~~fs~D~r~La~d~------~G~vLde~tq~~p~Lw~l~~~ 701 (1491)
.++|+|+..|+|.++|+.++..... ....+.|.+.++.+-+.. .|.|.. +.+ +-++++|
T Consensus 434 ~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN-~l~----vtdLrtG 508 (1062)
T KOG1912|consen 434 AGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRN-DLV----VTDLRTG 508 (1062)
T ss_pred ceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceee-eEE----EEEcccc
Confidence 2577899999999999999875432 234446666655543321 222211 111 1223333
Q ss_pred cccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCcccc---ccCCcccccccccc
Q 000454 702 LCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDVM---IDPLPEFIDVMDWE 774 (1491)
Q Consensus 702 l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~~~l---ieplp~~i~~~~W~ 774 (1491)
+- .++.++....+..+..|..|..|+|||+. -.+.-+.+|++.+...+ -..+|-++ .++|.
T Consensus 509 ls--------k~fR~l~~~despI~~irvS~~~~yLai~---Fr~~plEiwd~kt~~~lr~mS~a~P~it-~leWs 572 (1062)
T KOG1912|consen 509 LS--------KRFRGLQKPDESPIRAIRVSSSGRYLAIL---FRREPLEIWDLKTLRMLRLMSLALPLIT-VLEWS 572 (1062)
T ss_pred cc--------cccccCCCCCcCcceeeeecccCceEEEE---ecccchHHHhhccchHHHHHhhcCCcEE-EEeec
Confidence 21 11222222234556778999999999998 55667899998554322 23455444 69998
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.1e-10 Score=127.77 Aligned_cols=209 Identities=13% Similarity=0.219 Sum_probs=140.8
Q ss_pred CcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeee-cCCCCCceEEEEccCccccccccccCCCCCC
Q 000454 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL-SGHENDVNYVQFSGCAVASRFSLADSSKEDS 470 (1491)
Q Consensus 392 ~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l-~gH~~~V~sVafSpdg~as~~s~~~~~~~~~ 470 (1491)
...+..++|++.-..||++..|-.|++|+-.. .....+ ......|++++|-|.+
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss----------t~pt~Lks~sQrnvtclawRPls--------------- 152 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS----------TCPTKLKSVSQRNVTCLAWRPLS--------------- 152 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC----------CCCceecchhhcceeEEEeccCC---------------
Confidence 34577899999877889999999999999753 111222 2335689999999976
Q ss_pred CccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC
Q 000454 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL 550 (1491)
Q Consensus 471 ~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP 550 (1491)
...|+.|+.. -|.||.....-........ -......+.+-.+| ..|+++.|.+
T Consensus 153 ----------aselavgCr~-gIciW~~s~tln~~r~~~~---------------~s~~~~qvl~~pgh-~pVtsmqwn~ 205 (445)
T KOG2139|consen 153 ----------ASELAVGCRA-GICIWSDSRTLNANRNIRM---------------MSTHHLQVLQDPGH-NPVTSMQWNE 205 (445)
T ss_pred ----------cceeeeeecc-eeEEEEcCccccccccccc---------------ccccchhheeCCCC-ceeeEEEEcC
Confidence 3456666654 5889966531100000000 00000111222233 6799999999
Q ss_pred CCCEEEEEe-ccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceE
Q 000454 551 DNRFVLAAI-MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV 629 (1491)
Q Consensus 551 DG~~LaSGs-~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~Vt 629 (1491)
||..+++++ .+..|.|||..++..+....---+.++-+.||| ++.+|+++.-|+..++|+.....-........+.|.
T Consensus 206 dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvq 284 (445)
T KOG2139|consen 206 DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQ 284 (445)
T ss_pred CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCcee
Confidence 999999987 467899999999987766544556788999999 556666788999999996544332233333566999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 630 DGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 630 slafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
..+|+|+|++|..+.. |.-.+|.+
T Consensus 285 tacWspcGsfLLf~~s-gsp~lysl 308 (445)
T KOG2139|consen 285 TACWSPCGSFLLFACS-GSPRLYSL 308 (445)
T ss_pred eeeecCCCCEEEEEEc-CCceEEEE
Confidence 9999999999886654 33344444
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=130.90 Aligned_cols=334 Identities=17% Similarity=0.192 Sum_probs=231.2
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeE
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSM-ETAYCLASCR-GHEGDITDLAVSSNNALVASASNDCII 309 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl-~Tg~~l~tL~-gH~~~VtsLafSPDG~lLASGS~DGtI 309 (1491)
+...++.++||.+.|+....-|-..-+++.+.|.+|+||-- ..++.-..+. ....+++++.+.+....|+.|-..|++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 45567889999999999999998888999999999999953 3444433332 245789999999999999999999999
Q ss_pred EEEECC----CCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCC
Q 000454 310 RVWRLP----DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1491)
Q Consensus 310 rVWDl~----tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~ 385 (1491)
.-+.+. ....++....|...|..+.|+-... .+++.+.|..+.---.+.+..+....+...
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e---~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~------------ 157 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE---WVLSTGKDKQFAWHCTESGNRLGGYNFETP------------ 157 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce---eEEEeccccceEEEeeccCCcccceEeecc------------
Confidence 988664 3455666778999999999998766 899999988665444444443333221110
Q ss_pred CCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccC
Q 000454 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 386 ~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
..++.|.-. +...|...|.|.+..+.. .....+..+.+|.+.+.++.|.+.
T Consensus 158 ---------~t~~~~d~~--~~fvGd~~gqvt~lr~~~-------~~~~~i~~~~~h~~~~~~l~Wd~~----------- 208 (404)
T KOG1409|consen 158 ---------ASALQFDAL--YAFVGDHSGQITMLKLEQ-------NGCQLITTFNGHTGEVTCLKWDPG----------- 208 (404)
T ss_pred ---------CCCCceeeE--EEEecccccceEEEEEee-------cCCceEEEEcCcccceEEEEEcCC-----------
Confidence 001111111 445555666666555532 124578889999999999999986
Q ss_pred CCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeE
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNM 545 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vts 545 (1491)
+..|++|..|..+.+||+-..+ +....+.+|...|..
T Consensus 209 ---------------~~~LfSg~~d~~vi~wdigg~~----------------------------g~~~el~gh~~kV~~ 245 (404)
T KOG1409|consen 209 ---------------QRLLFSGASDHSVIMWDIGGRK----------------------------GTAYELQGHNDKVQA 245 (404)
T ss_pred ---------------CcEEEeccccCceEEEeccCCc----------------------------ceeeeeccchhhhhh
Confidence 3689999999999999987533 234456778888888
Q ss_pred EEEcCCCCEEEEEeccceEEEEECCCCceEE-----------------------------EEeCC-----CCCeEEEEEe
Q 000454 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVH-----------------------------SLTGH-----TESTYVLDVH 591 (1491)
Q Consensus 546 VafSPDG~~LaSGs~DG~IrIWDl~tgkll~-----------------------------tL~gH-----s~~VtsLafS 591 (1491)
+..-+--+.+++++.||.|.+|++....... -+..| ...|...+-+
T Consensus 246 l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s 325 (404)
T KOG1409|consen 246 LSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSS 325 (404)
T ss_pred hhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccccc
Confidence 8888888899999999999999986432110 00001 0111111111
Q ss_pred cCCCcEEEEEeCCCcE--------EEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 000454 592 PFNPRIAMSAGYDGKT--------IVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 592 Pdd~~lLaSgS~DGtI--------rIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
......+-+..-.+ .|+|. +..+++.+...+..|+.+.+-.+-.+|++++.|..|+|||+.
T Consensus 326 --~~~~~p~mg~e~~vR~~~~c~~~i~~~-~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~ 394 (404)
T KOG1409|consen 326 --NRSSYPTMGFEFSVRVCDSCYPTIKDE-ERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVR 394 (404)
T ss_pred --CccccccccceeEEEEecccchhhhcC-CCCccccccccccceeEEEhhhhccceeecCCceEEEEEech
Confidence 11111122222233 34444 335677777677789999999999999999999999999984
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=137.85 Aligned_cols=171 Identities=19% Similarity=0.255 Sum_probs=129.3
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeEEEEEe----cCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCC----------
Q 000454 252 DRSGRYVITGSDDRLVKIWSMETAYCLASCR----GHEGDITDLAVSSNN-ALVASASNDCIIRVWRLPD---------- 316 (1491)
Q Consensus 252 SpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~----gH~~~VtsLafSPDG-~lLASGS~DGtIrVWDl~t---------- 316 (1491)
.+.|--|+.|-.-|.|.+.|....+..+.+. -....|+|+.|-|.+ ..++.+-.+|.+.++|..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 3466678888888899988876522221111 134789999999954 4556667789999997521
Q ss_pred ----C--------------CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCccc
Q 000454 317 ----G--------------LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378 (1491)
Q Consensus 317 ----g--------------k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~ 378 (1491)
+ .++..+.--.+.|..++|+||++ +||+.+.||.++|||..+.+++....
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~---~LA~VSqDGfLRvF~fdt~eLlg~mk--------- 329 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK---YLATVSQDGFLRIFDFDTQELLGVMK--------- 329 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc---eEEEEecCceEEEeeccHHHHHHHHH---------
Confidence 1 12222323345789999999998 99999999999999998877655442
Q ss_pred CCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 379 g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
.--+...|++|+|||++|++|+.|-.|.||.+.. .+.+..-.+|..+|..|+|.|-
T Consensus 330 -----------SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e---------rRVVARGqGHkSWVs~VaFDpy 385 (636)
T KOG2394|consen 330 -----------SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE---------RRVVARGQGHKSWVSVVAFDPY 385 (636)
T ss_pred -----------hhccceEEEEEcCCccEEEecCCcceEEEEEecc---------ceEEEeccccccceeeEeeccc
Confidence 1345689999999999999999999999999964 5677888999999999999974
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-09 Score=132.43 Aligned_cols=394 Identities=10% Similarity=0.038 Sum_probs=242.9
Q ss_pred cccccceeEEEEccCCCCEEEEEEcCC------------CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 000454 228 TMVQKMQNIKRVRGHRNAVYCAIFDRS------------GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSS 295 (1491)
Q Consensus 228 ~~v~t~k~v~tL~GH~~~Vt~VaFSpD------------G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSP 295 (1491)
.+..+.+.++++.-|...|+.|.|.|- .-+||++...|.|.|||...+..+..+..|..+|.+++|-+
T Consensus 40 VDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~ 119 (1062)
T KOG1912|consen 40 VDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVP 119 (1062)
T ss_pred EehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeee
Confidence 344667889999999999999999873 12577788889999999999999999999999999999977
Q ss_pred ---CC-CEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCC----ccce
Q 000454 296 ---NN-ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ----FSPR 367 (1491)
Q Consensus 296 ---DG-~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~----~~~~ 367 (1491)
+. .+|++-....+|.+|+..+|..+...........|+.+.|-.. ..+...+..|.|.+-+.-... ..+.
T Consensus 120 ~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~--rh~~~l~s~g~vl~~~~l~~sep~~pgk~ 197 (1062)
T KOG1912|consen 120 ARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS--RHFCVLGSKGFVLSCKDLGLSEPDVPGKE 197 (1062)
T ss_pred ccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc--ceEEEEccCceEEEEeccCCCCCCCCcee
Confidence 33 3666666678999999999999888876667778899999764 256666666777666543211 1222
Q ss_pred eecCCCCCc--------ccCCCCCCCCCCCCCCc---ceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCcee
Q 000454 368 IYIPRPSDA--------VAGRNMAPSSSAGPQSH---QIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1491)
Q Consensus 368 i~~~~~~~~--------~~g~~~~~~~s~~~h~~---~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1491)
+++..+... ..+.. ......... ....++|+|.-+.++...-...+.|+|+.- ...+
T Consensus 198 ~qI~sd~Sdl~~lere~at~ns---~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~---------~~~l 265 (1062)
T KOG1912|consen 198 FQITSDHSDLAHLERETATGNS---TTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY---------ECCL 265 (1062)
T ss_pred EEEecCccchhhhhhhhhcccc---ccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh---------hcee
Confidence 222222111 00100 000000111 122467788665555555567788999853 3344
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEE--------------------
Q 000454 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW-------------------- 496 (1491)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIW-------------------- 496 (1491)
....-..+.+.-+.|-|++. .+.|++...||.+.+|
T Consensus 266 ~vvpier~~akfv~vlP~~~------------------------rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl 321 (1062)
T KOG1912|consen 266 AVVPIERGGAKFVDVLPDPR------------------------RDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDL 321 (1062)
T ss_pred EEEEeccCCcceeEeccCCC------------------------cceEEEEecCCeEEEEEeeccCccccccchhhcccc
Confidence 44444555566666666541 2344455555555555
Q ss_pred ----------------------------------------ecCCCCCCcccccccccc--ccCCCCCCCCCCCCCCCCce
Q 000454 497 ----------------------------------------IPRSRRSHPKAARWTQAY--HLKVPPPPMPPQPPRGGPRQ 534 (1491)
Q Consensus 497 ----------------------------------------Dl~s~k~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~ 534 (1491)
.+.+++.+.....-.... .+.+..............+.
T Consensus 322 ~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS 401 (1062)
T KOG1912|consen 322 GEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLS 401 (1062)
T ss_pred ccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchh
Confidence 444322211100000000 00000000000000000000
Q ss_pred eccCCCCCeeEEEEcC-----------CC-------CEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCc
Q 000454 535 RILPTPRGVNMIVWSL-----------DN-------RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1491)
Q Consensus 535 ~l~~h~~~VtsVafSP-----------DG-------~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~ 596 (1491)
.--.|..+.++....| .| .++|.|...|+|.|+|+.++.....+..|+..|.++.|-. ..
T Consensus 402 ~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g--~s 479 (1062)
T KOG1912|consen 402 DDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG--NS 479 (1062)
T ss_pred hcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc--ce
Confidence 1112344444433322 22 2678899999999999999999999999999999999964 33
Q ss_pred EEEEEe----------CCCcEEEEeCCCCceE--EEEe-eCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 000454 597 IAMSAG----------YDGKTIVWDIWEGIPI--RIYE-ISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1491)
Q Consensus 597 lLaSgS----------~DGtIrIWDl~tGk~l--~~l~-~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~ 661 (1491)
-|++.+ .-+.+.|-|+.+|... +.++ ....+|..+..|.-|+||++.-.+--+-|||+.+-..+.
T Consensus 480 slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr 557 (1062)
T KOG1912|consen 480 SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLR 557 (1062)
T ss_pred eEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHH
Confidence 333433 2345778899888543 3233 234589999999999999999999999999997766543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-09 Score=133.88 Aligned_cols=234 Identities=16% Similarity=0.051 Sum_probs=150.1
Q ss_pred CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeC---CCcEEEEccCCCCccceeecCCCCCcccCCCCC
Q 000454 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~---DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~ 383 (1491)
..|.+||.. |.....+..|...+.+.+|+||++ .|+..+. +..|.+||+.++......
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~---~lay~s~~~g~~~i~~~dl~~g~~~~l~--------------- 242 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQ---EITYMSYANGRPRVYLLDLETGQRELVG--------------- 242 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCC---EEEEEEecCCCCEEEEEECCCCcEEEee---------------
Confidence 378899974 555566777888999999999997 6666543 468999999887642211
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEE-EecCCce--EEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccc
Q 000454 384 PSSSAGPQSHQIFCCAFNANGTVFV-TGSSDTL--ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 384 ~~~s~~~h~~~V~slafSPDG~~La-sGs~DG~--IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
.....+...+|+|||+.|+ +.+.++. |++||+.++ ....+..+........|+|++
T Consensus 243 ------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~----------~~~~Lt~~~~~~~~~~~spDG----- 301 (435)
T PRK05137 243 ------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG----------TTTRLTDSPAIDTSPSYSPDG----- 301 (435)
T ss_pred ------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC----------ceEEccCCCCccCceeEcCCC-----
Confidence 1233466789999998775 4445554 777787642 234455566667778999986
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEe-CCC--eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceecc
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCS-RDG--SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS-~DG--tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1491)
..|+..+ .+| .|.+||+.++. ...+.
T Consensus 302 ---------------------~~i~f~s~~~g~~~Iy~~d~~g~~------------------------------~~~lt 330 (435)
T PRK05137 302 ---------------------SQIVFESDRSGSPQLYVMNADGSN------------------------------PRRIS 330 (435)
T ss_pred ---------------------CEEEEEECCCCCCeEEEEECCCCC------------------------------eEEee
Confidence 4555444 344 56666665422 11222
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecc---ceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEE
Q 000454 538 PTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD-----GKTIV 609 (1491)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~D---G~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~D-----GtIrI 609 (1491)
.....+....|+|||++|+....+ ..|.+||+.++.. ..+. ....+..+.|+|++..+++++... ..|.+
T Consensus 331 ~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 331 FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence 223345668899999999887643 3688999865543 3333 223467889999655555544433 35788
Q ss_pred EeCCCCceEEEEeeCCcceEEEEEcC
Q 000454 610 WDIWEGIPIRIYEISRFRLVDGKFSP 635 (1491)
Q Consensus 610 WDl~tGk~l~~l~~h~~~VtslafSP 635 (1491)
+|+..+.. ..+. ..+.+...+|+|
T Consensus 409 ~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 409 VDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred EECCCCce-EEcc-CCCCccCcccCC
Confidence 88855544 4444 344566778876
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-08 Score=120.96 Aligned_cols=364 Identities=13% Similarity=0.170 Sum_probs=223.9
Q ss_pred eEEEEECCCCeEEEEEecC---CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCce
Q 000454 266 LVKIWSMETAYCLASCRGH---EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 342 (1491)
Q Consensus 266 tIrIWDl~Tg~~l~tL~gH---~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~ 342 (1491)
.+.+|.........+...+ ...+...+++++|+++|.+. +..|+|++..++..+.+... ..++++.|+|.+.
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~-- 86 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGN-- 86 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--ceeeeeeeccccc--
Confidence 3677776543333332223 44577888999998888765 56899999988864444432 2799999999987
Q ss_pred EEEEEE-----eCC-----CcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC
Q 000454 343 YQLLSS-----SDD-----GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS 412 (1491)
Q Consensus 343 ~~LaSg-----S~D-----GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~ 412 (1491)
+|.+- ..+ -.+.+|++.++.....+.. ....+ ++..|+.|..+. +--.
T Consensus 87 -yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~------------------k~Q~~--W~~qfs~dEsl~-arlv 144 (566)
T KOG2315|consen 87 -YLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQK------------------KMQNG--WVPQFSIDESLA-ARLV 144 (566)
T ss_pred -ccccccccccccCCCCCCCceeeeeeccceehhheeh------------------hhhcC--cccccccchhhh-hhhh
Confidence 55442 222 2467999888544333321 01111 588888887543 3333
Q ss_pred CceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEE-----E
Q 000454 413 DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT-----C 487 (1491)
Q Consensus 413 DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaS-----g 487 (1491)
.+.+.+|++..- ....-.-|...|..+.++|... +..+++ .
T Consensus 145 ~nev~f~~~~~f----------~~~~~kl~~~~i~~f~lSpgp~------------------------~~~vAvyvPe~k 190 (566)
T KOG2315|consen 145 SNEVQFYDLGSF----------KTIQHKLSVSGITMLSLSPGPE------------------------PPFVAVYVPEKK 190 (566)
T ss_pred cceEEEEecCCc----------cceeeeeeccceeeEEecCCCC------------------------CceEEEEccCCC
Confidence 567999998541 1122234567788888888641 123332 3
Q ss_pred eCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE-Ee--c----
Q 000454 488 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA-AI--M---- 560 (1491)
Q Consensus 488 S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS-Gs--~---- 560 (1491)
+.-+.++||...-...+... ..+.+ ....-..+.|.+-|.-|++ ++ -
T Consensus 191 GaPa~vri~~~~~~~~~~~~------------------------a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPV------------------------ANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred CCCcEEEEeccccccccchh------------------------hhccc--cccceeEEEeccCCceEEEEEEEeecCCC
Confidence 44567888865521111000 00001 1112234678877764332 22 2
Q ss_pred -----cceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCceEEEEeeCCcceEEEEEc
Q 000454 561 -----DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAG-YDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 634 (1491)
Q Consensus 561 -----DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS-~DGtIrIWDl~tGk~l~~l~~h~~~VtslafS 634 (1491)
..+++++++....++..+. -.++|.++.|+|.+..+.++-| .-..+.|+|+ .+.++..+. .++-.++-|+
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~--egpRN~~~fn 320 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFP--EGPRNTAFFN 320 (566)
T ss_pred ccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCC--CCCccceEEC
Confidence 2368888887444444443 4789999999996665655544 5678999999 677776664 6677889999
Q ss_pred CCCCEEEEEeC---CCcEEEEECCCCcccccccceeeecCCCcceEEccCCCEEEccccccCccccCCCccccccCCCCC
Q 000454 635 PDGASIILSDD---VGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYP 711 (1491)
Q Consensus 635 PDG~~LAsgs~---DG~I~IWdl~tG~~~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~~p~p 711 (1491)
|.|++|+.++- -|.|-|||+.+-+++.... +
T Consensus 321 p~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~--------------------------------------a-------- 354 (566)
T KOG2315|consen 321 PHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK--------------------------------------A-------- 354 (566)
T ss_pred CCCCEEEEeecCCCCCceEEEeccchhhccccc--------------------------------------c--------
Confidence 99999998754 5899999986643332110 0
Q ss_pred CcchhhhhhcccccccEEEcCCCCeEEEe---eCCCCCCcEEeccCCCcccccc-CCc-ccccccccccCCcC
Q 000454 712 EPYQTMYQQRRLGALGIEWRPSSLKLAVG---PDFSLDQGYQLQPLADLDVMID-PLP-EFIDVMDWEPENEV 779 (1491)
Q Consensus 712 ~~~q~l~q~~~~~vl~lafSPDG~~LAvg---~d~s~d~~v~lw~~~~~~~lie-plp-~~i~~~~W~P~~ev 779 (1491)
....-.+|+|||.++.++ |..-+|..+.+|+.. +..+-+ ..+ ++-. +.|.|....
T Consensus 355 -----------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~sEL~q-v~W~P~~~~ 414 (566)
T KOG2315|consen 355 -----------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKSELLQ-VEWRPFNDK 414 (566)
T ss_pred -----------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhHhHhh-eeeeecCCc
Confidence 001127899999999987 366778899999985 332322 233 3443 778877664
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-11 Score=140.00 Aligned_cols=229 Identities=15% Similarity=0.183 Sum_probs=184.6
Q ss_pred eEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEE
Q 000454 330 VTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409 (1491)
Q Consensus 330 VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~Las 409 (1491)
-+.+.++.+|. .|+.++.-|.|..+|+.++.+...+.+ ...|..+.|-.+.++||+
T Consensus 132 PY~~~ytrnGr---hlllgGrKGHlAa~Dw~t~~L~~Ei~v---------------------~Etv~Dv~~LHneq~~AV 187 (545)
T KOG1272|consen 132 PYHLDYTRNGR---HLLLGGRKGHLAAFDWVTKKLHFEINV---------------------METVRDVTFLHNEQFFAV 187 (545)
T ss_pred CeeeeecCCcc---EEEecCCccceeeeecccceeeeeeeh---------------------hhhhhhhhhhcchHHHHh
Confidence 46788999987 899999999999999999998877743 455888899888888887
Q ss_pred ecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeC
Q 000454 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR 489 (1491)
Q Consensus 410 Gs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~ 489 (1491)
+- ...++|||-. +..+..+..| ..|..+.|.|.- -.|++++.
T Consensus 188 AQ-K~y~yvYD~~----------GtElHClk~~-~~v~rLeFLPyH--------------------------fLL~~~~~ 229 (545)
T KOG1272|consen 188 AQ-KKYVYVYDNN----------GTELHCLKRH-IRVARLEFLPYH--------------------------FLLVAASE 229 (545)
T ss_pred hh-hceEEEecCC----------CcEEeehhhc-Cchhhhcccchh--------------------------heeeeccc
Confidence 64 5689999874 3455555554 467888888863 37888999
Q ss_pred CCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEEC
Q 000454 490 DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1491)
Q Consensus 490 DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl 569 (1491)
.|.+..-|+.+++.. ..+....+.+..++-.|-+..+-+|...|+|.+|..
T Consensus 230 ~G~L~Y~DVS~GklV-----------------------------a~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 230 AGFLKYQDVSTGKLV-----------------------------ASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP 280 (545)
T ss_pred CCceEEEeechhhhh-----------------------------HHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence 999999999876532 223334456677888898889999999999999999
Q ss_pred CCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcE
Q 000454 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQL 649 (1491)
Q Consensus 570 ~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I 649 (1491)
...+++..+..|.++|.+|++.+ +++++||+|.|..|+|||+..-..+.++.. ..+...++||..|- ||++ ....|
T Consensus 281 ~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl-LA~~-~G~~v 356 (545)
T KOG1272|consen 281 NSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL-LALS-YGDHV 356 (545)
T ss_pred CCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeec-CCCccccccccccc-eeee-cCCee
Confidence 99999999999999999999999 889999999999999999998888877775 56788899997773 3433 33578
Q ss_pred EEEE
Q 000454 650 YILN 653 (1491)
Q Consensus 650 ~IWd 653 (1491)
.||.
T Consensus 357 ~iw~ 360 (545)
T KOG1272|consen 357 QIWK 360 (545)
T ss_pred eeeh
Confidence 9995
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-09 Score=119.28 Aligned_cols=239 Identities=14% Similarity=0.202 Sum_probs=156.3
Q ss_pred ceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEE
Q 000454 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 408 (1491)
Q Consensus 329 ~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~La 408 (1491)
....++|..|.. .+++|..+| .+||+++.-+....... ...+-.+.-|-| ..++||
T Consensus 7 ~~lsvs~NQD~S---cFava~~~G-friyn~~P~ke~~~r~~------------------~~~G~~~veMLf--R~N~la 62 (346)
T KOG2111|consen 7 KTLSVSFNQDHS---CFAVATDTG-FRIYNCDPFKESASRQF------------------IDGGFKIVEMLF--RSNYLA 62 (346)
T ss_pred ceeEEEEccCCc---eEEEEecCc-eEEEecCchhhhhhhcc------------------ccCchhhhhHhh--hhceEE
Confidence 345599999976 777777777 89998875222111100 001111222222 123333
Q ss_pred -EecCC------ceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCC
Q 000454 409 -TGSSD------TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1491)
Q Consensus 409 -sGs~D------G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~ 481 (1491)
+|+.. ..|.|||-.. ..++..+ .....|.+|.+.++
T Consensus 63 LVGGg~~pky~pNkviIWDD~k---------~~~i~el-~f~~~I~~V~l~r~--------------------------- 105 (346)
T KOG2111|consen 63 LVGGGSRPKYPPNKVIIWDDLK---------ERCIIEL-SFNSEIKAVKLRRD--------------------------- 105 (346)
T ss_pred EecCCCCCCCCCceEEEEeccc---------CcEEEEE-EeccceeeEEEcCC---------------------------
Confidence 33332 4789999532 2334333 34567888888764
Q ss_pred CeEEEEeCCCeEEEEecCCC-CCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE-Ee
Q 000454 482 DNIVTCSRDGSAIIWIPRSR-RSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA-AI 559 (1491)
Q Consensus 482 ~~LaSgS~DGtIrIWDl~s~-k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS-Gs 559 (1491)
.||+. ..+.|.||.+.+. +.. ........+.++.+++-.-+-.+||. |-
T Consensus 106 -riVvv-l~~~I~VytF~~n~k~l---------------------------~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 106 -RIVVV-LENKIYVYTFPDNPKLL---------------------------HVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred -eEEEE-ecCeEEEEEcCCChhhe---------------------------eeeecccCCCceEeecCCCCceEEEcCCC
Confidence 44443 4678999987631 100 00011112233434433333344444 45
Q ss_pred ccceEEEEECCCCce--EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc-EEEEeCCCCceEEEEeeCC--cceEEEEEc
Q 000454 560 MDCRICVWNAADGSL--VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK-TIVWDIWEGIPIRIYEISR--FRLVDGKFS 634 (1491)
Q Consensus 560 ~DG~IrIWDl~tgkl--l~tL~gHs~~VtsLafSPdd~~lLaSgS~DGt-IrIWDl~tGk~l~~l~~h~--~~VtslafS 634 (1491)
.-|.|+|-|+..-+. ...+.+|...|.|++.+- .+.++||+|..|+ |+|||..+|+++..+..+. ..|++++||
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 678999999976555 477889999999999998 7899999999996 6999999999999998553 479999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCc
Q 000454 635 PDGASIILSDDVGQLYILNTGQGE 658 (1491)
Q Consensus 635 PDG~~LAsgs~DG~I~IWdl~tG~ 658 (1491)
||+.+||++++.|+|+||.+....
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeecCC
Confidence 999999999999999999986644
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-09 Score=121.26 Aligned_cols=284 Identities=13% Similarity=0.176 Sum_probs=180.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC-----ceeeeccCC------------CceEEEEecCCCCceEEEEE
Q 000454 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGL-----PISVLRGHT------------AAVTAIAFSPRPGSVYQLLS 347 (1491)
Q Consensus 285 ~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk-----~i~~L~gHs------------~~VtsLaFSPdg~s~~~LaS 347 (1491)
..-|.+|.|...|.+||+|..+|.|.++.-.... ....++.|. ..|..+.|.++++. ..++.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~-a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL-AEFLL 103 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc-cEEEE
Confidence 4678999999999999999999999999643221 223344443 35888999998754 36777
Q ss_pred EeCCCcEEEEccCCCCccc---------------eeecCCCCCccc-CCCCCCCCCCCCCCcceEEEEECCCCCEEEEec
Q 000454 348 SSDDGTCRIWDARYSQFSP---------------RIYIPRPSDAVA-GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 411 (1491)
Q Consensus 348 gS~DGtVrIWDl~tg~~~~---------------~i~~~~~~~~~~-g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs 411 (1491)
.+.|.+|++|.+....... .+.+|....... -...........|...|.+++++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 8889999999886443222 000000000000 000111223356788899999999999888764
Q ss_pred CCceEEEEeCCCCCCCCCCCCCceeeeecCC-----CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEE
Q 000454 412 SDTLARVWNACKPNTDDSDQPNHEIDVLSGH-----ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT 486 (1491)
Q Consensus 412 ~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH-----~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaS 486 (1491)
|=.|.+|++.-... .. .+..++.+ +.-|++..|+|.. .+.|+-
T Consensus 184 -dLRINLWnlei~d~-----sF-nIVDIKP~nmEeLteVITsaEFhp~~-------------------------cn~f~Y 231 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQ-----SF-NIVDIKPANMEELTEVITSAEFHPHH-------------------------CNVFVY 231 (433)
T ss_pred -ceeeeeccccccCC-----ce-eEEEccccCHHHHHHHHhhhccCHhH-------------------------ccEEEE
Confidence 77899999864221 11 11122222 2346666777653 357889
Q ss_pred EeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEE
Q 000454 487 CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICV 566 (1491)
Q Consensus 487 gS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrI 566 (1491)
.+..|+|++-|++....-.. .... ...+.......-+..--..|..+.|++.|+|+++-.. -+|+|
T Consensus 232 SSSKGtIrLcDmR~~aLCd~---hsKl----------fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~ 297 (433)
T KOG1354|consen 232 SSSKGTIRLCDMRQSALCDA---HSKL----------FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKL 297 (433)
T ss_pred ecCCCcEEEeechhhhhhcc---hhhh----------hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEE
Confidence 99999999999985221000 0000 0001111111112223356888999999999998643 58999
Q ss_pred EEC-CCCceEEEEeCCCC------------Ce---EEEEEecCCCcEEEEEeCCCcEEEEeCCCCc
Q 000454 567 WNA-ADGSLVHSLTGHTE------------ST---YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGI 616 (1491)
Q Consensus 567 WDl-~tgkll~tL~gHs~------------~V---tsLafSPdd~~lLaSgS~DGtIrIWDl~tGk 616 (1491)
||+ ...+++.++.-|.. .| .-++|+- +..+++||+....++++++..|.
T Consensus 298 wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 298 WDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCc
Confidence 999 56777777766632 22 4477877 56788899999999999987664
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-08 Score=119.93 Aligned_cols=362 Identities=12% Similarity=0.128 Sum_probs=230.1
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEE
Q 000454 268 KIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347 (1491)
Q Consensus 268 rIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaS 347 (1491)
.+|...+...-..+..-.-++..++|||.|++|++....| |.+|.-..+..+..+. | ..|..+.|+|.+. +|.+
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~k---YL~t 88 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEK---YLVT 88 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccc---eeee
Confidence 3455555444444444677899999999999999987664 9999988777555554 3 5699999999998 8888
Q ss_pred EeCCCc---------------EEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceE-EEEECCCCCEEEEec
Q 000454 348 SSDDGT---------------CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF-CCAFNANGTVFVTGS 411 (1491)
Q Consensus 348 gS~DGt---------------VrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~-slafSPDG~~LasGs 411 (1491)
-+..+. +.+||+.++..+..+.... .....+ -+.|+-+..++|-.
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~------------------q~~~~Wp~~k~s~~D~y~ARv- 149 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGIS------------------QPYLGWPVLKFSIDDKYVARV- 149 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEeeccccC------------------Ccccccceeeeeecchhhhhh-
Confidence 765443 9999999998776653211 111123 56788777766544
Q ss_pred CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEE-----
Q 000454 412 SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT----- 486 (1491)
Q Consensus 412 ~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaS----- 486 (1491)
....+.|+++ +.+.. ..+...+. ...|....|+|.+- +..|+.
T Consensus 150 v~~sl~i~e~-t~n~~-----~~p~~~lr--~~gi~dFsisP~~n------------------------~~~la~~tPEk 197 (561)
T COG5354 150 VGSSLYIHEI-TDNIE-----EHPFKNLR--PVGILDFSISPEGN------------------------HDELAYWTPEK 197 (561)
T ss_pred ccCeEEEEec-CCccc-----cCchhhcc--ccceeeEEecCCCC------------------------CceEEEEcccc
Confidence 3456889997 33221 11122222 34577778887641 122332
Q ss_pred EeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe-------
Q 000454 487 CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI------- 559 (1491)
Q Consensus 487 gS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs------- 559 (1491)
....++++||.+...... ....-....-..+.|.+.|.+|++-.
T Consensus 198 ~~kpa~~~i~sIp~~s~l-----------------------------~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 198 LNKPAMVRILSIPKNSVL-----------------------------VTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred CCCCcEEEEEEccCCCee-----------------------------eeeeeEeecccEEEEecCCceEEEEEEEeeecc
Confidence 345677777766532211 00000111123577888888876532
Q ss_pred ----ccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEE-eCCCcEEEEeCCCCceEEEEeeCCcceEEEEEc
Q 000454 560 ----MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA-GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 634 (1491)
Q Consensus 560 ----~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSg-S~DGtIrIWDl~tGk~l~~l~~h~~~VtslafS 634 (1491)
....++|+++.. .-+....+-.++|..++|.|.+.++.+.. -.+..+.++|+... +...+ ....=..+.||
T Consensus 249 KsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fs 324 (561)
T COG5354 249 KSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFS 324 (561)
T ss_pred cceeccceEEEEeecc-cccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCccccccccc
Confidence 134688898863 33333336688999999999777766554 57889999999544 43333 34455678899
Q ss_pred CCCCEEEEEeC---CCcEEEEECCCCcccc-----cccceeeecCCCcceEEccCCCEEEccccccCccccCCCcccccc
Q 000454 635 PDGASIILSDD---VGQLYILNTGQGESQK-----DAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSA 706 (1491)
Q Consensus 635 PDG~~LAsgs~---DG~I~IWdl~tG~~~~-----~~~~~~~fs~D~r~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s 706 (1491)
|.++++++++- .|.|.||+........ .-..-+.|+||+..+..+..+..+..+.. ..+|++....+
T Consensus 325 p~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~--i~l~~v~g~~~--- 399 (561)
T COG5354 325 PHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNS--IKLWDVYGAKV--- 399 (561)
T ss_pred CcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcc--eEEEEecCchh---
Confidence 99999998755 4789999986543322 11244578888888777766665432222 25676433221
Q ss_pred CCCCCCcchhhhhhcccccccEEEcCCCCeEEEe
Q 000454 707 MIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVG 740 (1491)
Q Consensus 707 ~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg 740 (1491)
...+.+.|.|.|++..+.
T Consensus 400 ----------------fel~~~~W~p~~~~~tts 417 (561)
T COG5354 400 ----------------FELTNITWDPSGQYVTTS 417 (561)
T ss_pred ----------------hhhhhccccCCcccceee
Confidence 134568999999888876
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-08 Score=115.10 Aligned_cols=264 Identities=16% Similarity=0.132 Sum_probs=170.8
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC----------CCeEEEEECCCCCceeeeccC-------C
Q 000454 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN----------DCIIRVWRLPDGLPISVLRGH-------T 327 (1491)
Q Consensus 265 GtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~----------DGtIrVWDl~tgk~i~~L~gH-------s 327 (1491)
++|.|.|..+++.+.++.....+-. + ++|||+.|+.+.. +..|.|||+.+.+.+..+... .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999999998875443333 4 9999998877765 678999999999998887632 2
Q ss_pred CceEEEEecCCCCceEEEEEEe-C-CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCC
Q 000454 328 AAVTAIAFSPRPGSVYQLLSSS-D-DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1491)
Q Consensus 328 ~~VtsLaFSPdg~s~~~LaSgS-~-DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~ 405 (1491)
.....++++|+++ +|++.. . +..|.++|+.+++.+..+.. |++.
T Consensus 105 ~~~~~~~ls~dgk---~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-------------------------------p~~~ 150 (352)
T TIGR02658 105 TYPWMTSLTPDNK---TLLFYQFSPSPAVGVVDLEGKAFVRMMDV-------------------------------PDCY 150 (352)
T ss_pred CccceEEECCCCC---EEEEecCCCCCEEEEEECCCCcEEEEEeC-------------------------------CCCc
Confidence 2345789999998 666554 3 78999999999988777632 4444
Q ss_pred EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEE
Q 000454 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIV 485 (1491)
Q Consensus 406 ~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~La 485 (1491)
.++..+.++...+| .++ ....+
T Consensus 151 ~vy~t~e~~~~~~~---------------------------------~Dg-------------------------~~~~v 172 (352)
T TIGR02658 151 HIFPTANDTFFMHC---------------------------------RDG-------------------------SLAKV 172 (352)
T ss_pred EEEEecCCccEEEe---------------------------------ecC-------------------------ceEEE
Confidence 44333322211111 000 00111
Q ss_pred EEeCCCeEE-----EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC-CCCEEEEEe
Q 000454 486 TCSRDGSAI-----IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNRFVLAAI 559 (1491)
Q Consensus 486 SgS~DGtIr-----IWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-DG~~LaSGs 559 (1491)
+-..+|... +++... . -+..+ + .|++ +|+++++..
T Consensus 173 ~~d~~g~~~~~~~~vf~~~~------------------------------~---~v~~r--P----~~~~~dg~~~~vs~ 213 (352)
T TIGR02658 173 GYGTKGNPKIKPTEVFHPED------------------------------E---YLINH--P----AYSNKSGRLVWPTY 213 (352)
T ss_pred EecCCCceEEeeeeeecCCc------------------------------c---ccccC--C----ceEcCCCcEEEEec
Confidence 111122211 111100 0 00001 1 2345 788877776
Q ss_pred ccceEEEEECCC-----CceEEEEeC-------CCCCeEEEEEecCCCcEEEEE-e--------CCCcEEEEeCCCCceE
Q 000454 560 MDCRICVWNAAD-----GSLVHSLTG-------HTESTYVLDVHPFNPRIAMSA-G--------YDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 560 ~DG~IrIWDl~t-----gkll~tL~g-------Hs~~VtsLafSPdd~~lLaSg-S--------~DGtIrIWDl~tGk~l 618 (1491)
. |.|++.|+.. ...+..+.. ..+.+.-++++|+++++++.. + ..+.|.++|..+++.+
T Consensus 214 e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi 292 (352)
T TIGR02658 214 T-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL 292 (352)
T ss_pred C-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE
Confidence 6 9999999543 233333221 233455699999777766633 1 1258999999999999
Q ss_pred EEEeeCCcceEEEEEcCCCC-EEEEEe-CCCcEEEEECCCCcccccc
Q 000454 619 RIYEISRFRLVDGKFSPDGA-SIILSD-DVGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 619 ~~l~~h~~~VtslafSPDG~-~LAsgs-~DG~I~IWdl~tG~~~~~~ 663 (1491)
..+... ..+..++|+|||+ +|++.. .++.|.|+|+.+++.++..
T Consensus 293 ~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 293 RKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999854 4788999999999 887766 5788999999999876654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-09 Score=127.86 Aligned_cols=233 Identities=16% Similarity=0.061 Sum_probs=146.8
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCCceeeeccCCCceEEEEecCCCC
Q 000454 264 DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 340 (1491)
Q Consensus 264 DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D---GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~ 340 (1491)
...|.++|.. +.....+..+...+.+.+|+|||++||.++.. ..|++|++.+++... +..+.+.+.+++|+|+++
T Consensus 169 ~~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 3468888875 44445555677789999999999999987654 479999998886543 334556677899999987
Q ss_pred ceEEEE-EEeCCC--cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-Cc--
Q 000454 341 SVYQLL-SSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT-- 414 (1491)
Q Consensus 341 s~~~La-SgS~DG--tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-DG-- 414 (1491)
.|+ +.+.++ .|.+|++.++...... .+........|+|+|+.|+..+. .+
T Consensus 247 ---~l~~~~~~~~~~~i~~~d~~~~~~~~l~---------------------~~~~~~~~~~~s~dg~~l~~~s~~~g~~ 302 (417)
T TIGR02800 247 ---KLAVSLSKDGNPDIYVMDLDGKQLTRLT---------------------NGPGIDTEPSWSPDGKSIAFTSDRGGSP 302 (417)
T ss_pred ---EEEEEECCCCCccEEEEECCCCCEEECC---------------------CCCCCCCCEEECCCCCEEEEEECCCCCc
Confidence 444 445444 5888888776432111 01122345689999998876554 33
Q ss_pred eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCC---
Q 000454 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG--- 491 (1491)
Q Consensus 415 ~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG--- 491 (1491)
.|++|++.++ ....+..+...+..+.|+|++ ..++.++.++
T Consensus 303 ~iy~~d~~~~----------~~~~l~~~~~~~~~~~~spdg--------------------------~~i~~~~~~~~~~ 346 (417)
T TIGR02800 303 QIYMMDADGG----------EVRRLTFRGGYNASPSWSPDG--------------------------DLIAFVHREGGGF 346 (417)
T ss_pred eEEEEECCCC----------CEEEeecCCCCccCeEECCCC--------------------------CEEEEEEccCCce
Confidence 5777777532 122334445566778898876 4666666655
Q ss_pred eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccc---eEEEEE
Q 000454 492 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWN 568 (1491)
Q Consensus 492 tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG---~IrIWD 568 (1491)
.|.+||+.++.. ..+. ........+|+|||++|+.++.++ .+++.+
T Consensus 347 ~i~~~d~~~~~~------------------------------~~l~-~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 347 NIAVMDLDGGGE------------------------------RVLT-DTGLDESPSFAPNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred EEEEEeCCCCCe------------------------------EEcc-CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEE
Confidence 677888765220 0000 011123457999999998877654 455655
Q ss_pred CCCCceEEEEeCCCCCeEEEEE
Q 000454 569 AADGSLVHSLTGHTESTYVLDV 590 (1491)
Q Consensus 569 l~tgkll~tL~gHs~~VtsLaf 590 (1491)
. +|.....+..+.+.+..++|
T Consensus 396 ~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 396 T-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred C-CCceeeECCCCCCCcCCCCC
Confidence 4 45555555544444444444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-09 Score=131.83 Aligned_cols=150 Identities=25% Similarity=0.399 Sum_probs=126.5
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCcee-eeccCC
Q 000454 249 AIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS-VLRGHT 327 (1491)
Q Consensus 249 VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~-~L~gHs 327 (1491)
+-++++.-++++|+.-+.|.+|+..--..-..+.||.+.|.++.|+-||.++++.|.|.++++|.+.+.+... +.-+|+
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 4467777899999999999999987333333588999999999999999999999999999999999988776 677899
Q ss_pred CceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEE
Q 000454 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 407 (1491)
Q Consensus 328 ~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~L 407 (1491)
+.|+.++|.|. .+++++.|.++++|+....++. .+ .......|+.++..++...+
T Consensus 219 aRvw~~~~~~n-----~i~t~gedctcrvW~~~~~~l~-~y-------------------~~h~g~~iw~~~~~~~~~~~ 273 (967)
T KOG0974|consen 219 ARVWACCFLPN-----RIITVGEDCTCRVWGVNGTQLE-VY-------------------DEHSGKGIWKIAVPIGVIIK 273 (967)
T ss_pred ceeEEEEeccc-----eeEEeccceEEEEEecccceeh-hh-------------------hhhhhcceeEEEEcCCceEE
Confidence 99999999997 6999999999999976544322 21 12245669999999999999
Q ss_pred EEecCCceEEEEeCCC
Q 000454 408 VTGSSDTLARVWNACK 423 (1491)
Q Consensus 408 asGs~DG~IrVWDl~t 423 (1491)
++++.|+.+++|++..
T Consensus 274 vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 274 VTGGNDSTLKLWDLNG 289 (967)
T ss_pred EeeccCcchhhhhhhc
Confidence 9999999999999854
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-08 Score=120.09 Aligned_cols=311 Identities=12% Similarity=0.056 Sum_probs=187.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEE
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334 (1491)
Q Consensus 255 G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLa 334 (1491)
+.+|++++.+|.|..+|..+|+.+....-.......++. ++..++.++.++.|..+|..+|+.+...... +.+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence 568888889999999999999998876643332223332 4677888889999999999999988766532 2222211
Q ss_pred ecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCc
Q 000454 335 FSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT 414 (1491)
Q Consensus 335 FSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG 414 (1491)
... +. .++.++.+|.|..||..+++.+.......+... ..... +..+. + ..++++..+|
T Consensus 142 ~v~-~~---~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~-----------~~~~~----sp~~~-~-~~v~~~~~~g 200 (377)
T TIGR03300 142 LVA-NG---LVVVRTNDGRLTALDAATGERLWTYSRVTPALT-----------LRGSA----SPVIA-D-GGVLVGFAGG 200 (377)
T ss_pred EEE-CC---EEEEECCCCeEEEEEcCCCceeeEEccCCCcee-----------ecCCC----CCEEE-C-CEEEEECCCC
Confidence 111 22 577788899999999999987666532111000 00000 01111 2 3677788889
Q ss_pred eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEE
Q 000454 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAI 494 (1491)
Q Consensus 415 ~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIr 494 (1491)
.+..+|+.++...-.. ......+.. .+..+.. ........++.+++++.+|.+.
T Consensus 201 ~v~ald~~tG~~~W~~----~~~~~~g~~-~~~~~~~---------------------~~~~p~~~~~~vy~~~~~g~l~ 254 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQ----RVALPKGRT-ELERLVD---------------------VDGDPVVDGGQVYAVSYQGRVA 254 (377)
T ss_pred EEEEEEccCCCEeeee----ccccCCCCC-chhhhhc---------------------cCCccEEECCEEEEEEcCCEEE
Confidence 9999998764321000 000000000 0000000 0000111245788888999999
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCce
Q 000454 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 574 (1491)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkl 574 (1491)
.||+.+++. .|.... ......+ .++..|++++.+|.|+.+|..+|+.
T Consensus 255 a~d~~tG~~-----~W~~~~--------------------------~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 255 ALDLRSGRV-----LWKRDA--------------------------SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred EEECCCCcE-----EEeecc--------------------------CCccCce--EeCCEEEEECCCCeEEEEECCCCcE
Confidence 999987542 232110 0011111 2466788888999999999999988
Q ss_pred EEEEeCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEE
Q 000454 575 VHSLTGHTE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYIL 652 (1491)
Q Consensus 575 l~tL~gHs~-~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IW 652 (1491)
+........ ....... .+..|++++.+|.|++||..+|+.+..+..+...+..--...++ .|++++.||.|+.|
T Consensus 302 ~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 302 LWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 766532211 1222222 23466678999999999999999999998665444332222333 58888999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-09 Score=119.09 Aligned_cols=117 Identities=20% Similarity=0.369 Sum_probs=92.6
Q ss_pred CCCeeEEEEcCCCCEEEEE--eccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC---CCcEEEEeCCC
Q 000454 540 PRGVNMIVWSLDNRFVLAA--IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY---DGKTIVWDIWE 614 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSG--s~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~---DGtIrIWDl~t 614 (1491)
...|..++|+|+|+.||+. ..+..|.|||+. ++.+..+. ...+..|.|+| .+++|++|+. .|.|.+||+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 4469999999999987654 467799999996 77777764 46678999999 5667777764 46799999999
Q ss_pred CceEEEEeeCCcceEEEEEcCCCCEEEEEeC------CCcEEEEECCCCcccccc
Q 000454 615 GIPIRIYEISRFRLVDGKFSPDGASIILSDD------VGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 615 Gk~l~~l~~h~~~VtslafSPDG~~LAsgs~------DG~I~IWdl~tG~~~~~~ 663 (1491)
.+.+..+. +..++.++|||||++|+++.. |..++||++ +|+.+...
T Consensus 135 ~~~i~~~~--~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 135 KKKISTFE--HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CEEeeccc--cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 99888876 345789999999999998753 789999998 46554433
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-08 Score=121.43 Aligned_cols=316 Identities=11% Similarity=0.122 Sum_probs=193.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-----------CCeEEEEE
Q 000454 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN-----------DCIIRVWR 313 (1491)
Q Consensus 245 ~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~-----------DGtIrVWD 313 (1491)
.-+-+.|||-|.||+|-..-| |.+|--.+...++.+. |. .|.-+.|||+.+||+|-+. ...++|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 457789999999999998877 8899877666666664 44 5899999999999999753 25799999
Q ss_pred CCCCCceeeeccC--CCceE-EEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCC
Q 000454 314 LPDGLPISVLRGH--TAAVT-AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1491)
Q Consensus 314 l~tgk~i~~L~gH--s~~Vt-sLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~ 390 (1491)
+.+|...+.+... ...++ -..||.|++ ++|.-..+ .|.||+...-.++... .-
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdK---y~Arm~~~-sisIyEtpsf~lld~K--------------------sl 344 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDK---YFARMTGN-SISIYETPSFMLLDKK--------------------SL 344 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCc---eeEEeccc-eEEEEecCceeeeccc--------------------cc
Confidence 9999988887652 22232 457999987 77766664 5889887543222111 11
Q ss_pred CCcceEEEEECCCCCEEEEecCC-----ceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccC
Q 000454 391 QSHQIFCCAFNANGTVFVTGSSD-----TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 391 h~~~V~slafSPDG~~LasGs~D-----G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
.-..|....|+|.+++||.-... ..+.+..+.+ .+.++...-|.-.=..+.|...|
T Consensus 345 ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs---------~~~iRt~nlfnVsDckLhWQk~g---------- 405 (698)
T KOG2314|consen 345 KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS---------KREIRTKNLFNVSDCKLHWQKSG---------- 405 (698)
T ss_pred CCccccCcccCCCcceEEEEcccccCCcceEEEEecCc---------cceeeeccceeeeccEEEeccCC----------
Confidence 34458889999998877743211 1222222211 12222222222111223333322
Q ss_pred CCCCCCccccccccCCCeEEEE----------eCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcee
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTC----------SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR 535 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSg----------S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 535 (1491)
++|+.- +.--.+.|+.++... ....
T Consensus 406 ----------------dyLcvkvdR~tK~~~~g~f~n~eIfrireKd-----------------------------Ipve 440 (698)
T KOG2314|consen 406 ----------------DYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-----------------------------IPVE 440 (698)
T ss_pred ----------------cEEEEEEEeeccccccceEeeEEEEEeeccC-----------------------------CCce
Confidence 222211 111123333333211 0011
Q ss_pred ccCCCCCeeEEEEcCCCCEEEEEec---cceEEEEECCC----CceEEEEeCCCCCeEEEEEecCCCcEEEEE---eCCC
Q 000454 536 ILPTPRGVNMIVWSLDNRFVLAAIM---DCRICVWNAAD----GSLVHSLTGHTESTYVLDVHPFNPRIAMSA---GYDG 605 (1491)
Q Consensus 536 l~~h~~~VtsVafSPDG~~LaSGs~---DG~IrIWDl~t----gkll~tL~gHs~~VtsLafSPdd~~lLaSg---S~DG 605 (1491)
.......|..++|-|.|..+++-+. ..++.+|.+.+ .+++..+.. ...+.|.|+|.| ++++.+ |..|
T Consensus 441 ~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG-~fvvva~l~s~~g 517 (698)
T KOG2314|consen 441 VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKG-RFVVVAALVSRRG 517 (698)
T ss_pred eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCC-cEEEEEEeccccc
Confidence 1233456888999999998877543 34688887763 234444433 345789999954 554443 4578
Q ss_pred cEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeC------CCcEEEEEC
Q 000454 606 KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDD------VGQLYILNT 654 (1491)
Q Consensus 606 tIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~------DG~I~IWdl 654 (1491)
.+.++|+.-..+..+-...+...+.+.|.|.|+|+++++. |...+||++
T Consensus 518 ~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 518 DLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred ceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence 9999999754444444445667888999999999999865 334456655
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-09 Score=134.04 Aligned_cols=199 Identities=19% Similarity=0.243 Sum_probs=157.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC----eEEEEEcCCCCEEEEEECCCeEEEEECCCCCc
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD----ITDLAVSSNNALVASASNDCIIRVWRLPDGLP 319 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~----VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~ 319 (1491)
+.|....+.-+.+.++.+..+..+.|||...+..+..+...... ..-+.++++.-++++|+.-+.|.+|+......
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 44555666677888999999999999999988777666533222 12233566777999999999999999874433
Q ss_pred eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEE
Q 000454 320 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399 (1491)
Q Consensus 320 i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sla 399 (1491)
-..+.+|.+.|..+.|+-++. ++++++.|.++++|++.+.+.... ...+|...|+.++
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~---~i~s~SdDRsiRlW~i~s~~~~~~-------------------~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGR---YIASVSDDRSIRLWPIDSREVLGC-------------------TGFGHSARVWACC 225 (967)
T ss_pred cceecccCCceEEEEEccCCc---EEEEEecCcceeeeecccccccCc-------------------ccccccceeEEEE
Confidence 336889999999999999998 999999999999999998876541 1245899999999
Q ss_pred ECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCC-CceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 400 FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN-DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 400 fSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~-~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
|.|+ .|++++.|.+.++|+.. ...+..+.+|.+ .|..++..+..
T Consensus 226 ~~~n--~i~t~gedctcrvW~~~----------~~~l~~y~~h~g~~iw~~~~~~~~----------------------- 270 (967)
T KOG0974|consen 226 FLPN--RIITVGEDCTCRVWGVN----------GTQLEVYDEHSGKGIWKIAVPIGV----------------------- 270 (967)
T ss_pred eccc--eeEEeccceEEEEEecc----------cceehhhhhhhhcceeEEEEcCCc-----------------------
Confidence 9998 89999999999999764 334456777754 57777777653
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCC
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRR 502 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k 502 (1491)
..++|++.||.+++|++....
T Consensus 271 ---~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 271 ---IIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred ---eEEEeeccCcchhhhhhhccc
Confidence 478999999999999988654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-08 Score=120.63 Aligned_cols=418 Identities=12% Similarity=0.129 Sum_probs=251.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---------------EEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY---------------CLASCRGHEGDITDLAVSSNNALVASASNDCI 308 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~---------------~l~tL~gH~~~VtsLafSPDG~lLASGS~DGt 308 (1491)
....|++|+....|||+|+.||.++|..+.+.. .-+++.||.+.|.-+.|+.+.+.|-+...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 457899999999999999999999999876431 23467899999999999999999999999999
Q ss_pred EEEEECCCCCceeeec--cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 309 IRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 309 IrVWDl~tgk~i~~L~--gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
|.||-+-.|.-..... ...+.|.+++|..+|. .++....||.|.+=.++....-..-
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~---kIcIvYeDGavIVGsvdGNRIwgKe------------------ 153 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT---KICIVYEDGAVIVGSVDGNRIWGKE------------------ 153 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc---EEEEEEccCCEEEEeeccceecchh------------------
Confidence 9999998775443322 3456799999999998 8888899998888776644321110
Q ss_pred CCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCC--CceeeeecCCCCCceEEEEccCcccccccccc
Q 000454 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP--NHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1491)
Q Consensus 387 s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~--~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~ 464 (1491)
-.......+.|++|...++.+-..|.+.+||....-....... ......+......|..+.|....
T Consensus 154 ---Lkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~--------- 221 (1189)
T KOG2041|consen 154 ---LKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP--------- 221 (1189)
T ss_pred ---cchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc---------
Confidence 0122345789999999999999999999999853210000000 00001111122234455554221
Q ss_pred CCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCee
Q 000454 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVN 544 (1491)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vt 544 (1491)
......+...|+.+-..|.+.|..-.+. +.-.+......+.
T Consensus 222 ---------~~~v~pdrP~lavcy~nGr~QiMR~eND------------------------------~~Pvv~dtgm~~v 262 (1189)
T KOG2041|consen 222 ---------YQPVPPDRPRLAVCYANGRMQIMRSEND------------------------------PEPVVVDTGMKIV 262 (1189)
T ss_pred ---------cccCCCCCCEEEEEEcCceehhhhhcCC------------------------------CCCeEEecccEee
Confidence 0011122357999999998887533221 1111223345688
Q ss_pred EEEEcCCCCEEEEEeccc---------eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000454 545 MIVWSLDNRFVLAAIMDC---------RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 545 sVafSPDG~~LaSGs~DG---------~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG 615 (1491)
.+.|+++|.+||+++.+. .|.+|.. -|+.+.+++.....|++++|-. .+..++ -..|+.|.+=++...
T Consensus 263 gakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg-~gLriA-~AvdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 263 GAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEG-TGLRIA-IAVDSFIYFANIRPE 339 (1189)
T ss_pred cceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcC-CceEEE-EEecceEEEEeeccc
Confidence 899999999999987642 4666654 4888889998889999999976 343333 345888888776421
Q ss_pred ceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCccccccc---ceeeecCCCcceEEccCCCEEEcccccc
Q 000454 616 IPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAK---YDQFFLGDYRPLVQDTYGNVLDQETQLA 692 (1491)
Q Consensus 616 k~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~---~~~~fs~D~r~La~d~~G~vLde~tq~~ 692 (1491)
- .+-+. ...|.-+---++ .-.-.|.+||+.+.+..-... ....|..+.-.|+......++-+...+-
T Consensus 340 y-kWgy~--e~TvVy~y~~~e-------~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le 409 (1189)
T KOG2041|consen 340 Y-KWGYI--EETVVYVYQKEE-------LPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLE 409 (1189)
T ss_pred c-eEEEe--eeEEEEEEccCC-------CcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhh
Confidence 1 11111 001110000011 112357889988776532221 2334545555555444444433221110
Q ss_pred CccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCcc
Q 000454 693 PHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLD 758 (1491)
Q Consensus 693 p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~~ 758 (1491)
.......-.+|-..+.+....|....|. -.--.|..++++ +. ..+.+|....+.
T Consensus 410 ~~~~~~~l~LCNSIGT~lD~kytdirP~--------Fv~vn~~~vviA---S~-e~~~iWhy~~pK 463 (1189)
T KOG2041|consen 410 NRSRVYFLQLCNSIGTSLDYKYTDIRPK--------FVCVNGICVVIA---SE-ERYFIWHYVLPK 463 (1189)
T ss_pred cccceEEEeeecccCCcCCCCcceeeee--------EEEecceEEEEe---cc-ccEEEEEEeccc
Confidence 0111112234555555655556554322 112245666665 44 468888875443
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.5e-09 Score=121.71 Aligned_cols=271 Identities=12% Similarity=0.091 Sum_probs=190.2
Q ss_pred CCCEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCeEEEE------EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000454 243 RNAVYCAIFDRSG--RYVITGSDDRLVKIWSMETAYCLAS------CRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG--~~LATGS~DGtIrIWDl~Tg~~l~t------L~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl 314 (1491)
...|..++|--++ ..|...+.+..+..+.+....+... .....+.|..++.. +..|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 4566777776654 3455555666777777766554443 33456777777665 336778888999999998
Q ss_pred CCCC----ceeeeccCCCceEEEEecCCCCceEEEEEEeCC--CcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCC
Q 000454 315 PDGL----PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD--GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1491)
Q Consensus 315 ~tgk----~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D--GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~ 388 (1491)
..+. ++..+..+ ..+..|.-++... ..+++|+.. ..+.|||+...+.+..-. +.......
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p--~Iva~GGke~~n~lkiwdle~~~qiw~aK-----------NvpnD~L~ 198 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDP--YIVATGGKENINELKIWDLEQSKQIWSAK-----------NVPNDRLG 198 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCC--ceEecCchhcccceeeeecccceeeeecc-----------CCCCcccc
Confidence 7542 33444433 4566777777654 367779988 889999998874333221 11111111
Q ss_pred CCCCcceEEEEECCC--CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCC
Q 000454 389 GPQSHQIFCCAFNAN--GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSS 466 (1491)
Q Consensus 389 ~~h~~~V~slafSPD--G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~ 466 (1491)
-.-.-+++.+.|-+. ...||+++.-+.|++||.+.. .+++..+..-...|+++...|.+
T Consensus 199 LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q--------RRPV~~fd~~E~~is~~~l~p~g----------- 259 (412)
T KOG3881|consen 199 LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ--------RRPVAQFDFLENPISSTGLTPSG----------- 259 (412)
T ss_pred ceeeeeeccceecCCCCCceEEEEecceeEEEecCccc--------CcceeEeccccCcceeeeecCCC-----------
Confidence 223446778899887 789999999999999999753 45666777778888898888875
Q ss_pred CCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEE
Q 000454 467 KEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI 546 (1491)
Q Consensus 467 ~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsV 546 (1491)
+.+++|..-|.+..||++.++..+ ..+.+..+.|++|
T Consensus 260 ---------------n~Iy~gn~~g~l~~FD~r~~kl~g----------------------------~~~kg~tGsirsi 296 (412)
T KOG3881|consen 260 ---------------NFIYTGNTKGQLAKFDLRGGKLLG----------------------------CGLKGITGSIRSI 296 (412)
T ss_pred ---------------cEEEEecccchhheecccCceeec----------------------------cccCCccCCcceE
Confidence 689999999999999999755321 1245567789999
Q ss_pred EEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEec
Q 000454 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 547 afSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSP 592 (1491)
..+|.+++|++++-|..|+|+|+.+.++++...- ...+++|.+.+
T Consensus 297 h~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~ 341 (412)
T KOG3881|consen 297 HCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRD 341 (412)
T ss_pred EEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecC
Confidence 9999999999999999999999999777664431 22345565544
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-09 Score=117.70 Aligned_cols=148 Identities=19% Similarity=0.281 Sum_probs=107.3
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEECC-CCeEEEEEec-CCCCeEEEEEcCCCCEEEEE--ECCCeEEEE
Q 000454 247 YCAIFDRSGRYVITGSD----------DRLVKIWSME-TAYCLASCRG-HEGDITDLAVSSNNALVASA--SNDCIIRVW 312 (1491)
Q Consensus 247 t~VaFSpDG~~LATGS~----------DGtIrIWDl~-Tg~~l~tL~g-H~~~VtsLafSPDG~lLASG--S~DGtIrVW 312 (1491)
..+.|+++|++|+.-.. -|...||-+. .+.....+.- ..++|.+++|+|+|+.||+. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35779999988765433 2345555552 2333444432 35579999999999987654 456799999
Q ss_pred ECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeC---CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCC
Q 000454 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 313 Dl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~---DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
|++ ++.+..+. ...+..|.|+|+|+ +|++++. .|.|.+||+.+.+.+...
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~---~l~~~g~~n~~G~l~~wd~~~~~~i~~~--------------------- 141 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGR---FLVLAGFGNLNGDLEFWDVRKKKKISTF--------------------- 141 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCC---EEEEEEccCCCcEEEEEECCCCEEeecc---------------------
Confidence 996 66666664 56788999999998 7787764 467999999976655443
Q ss_pred CCCcceEEEEECCCCCEEEEecC------CceEEEEeCC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSS------DTLARVWNAC 422 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~------DG~IrVWDl~ 422 (1491)
....+..++|+|+|++|+++.. |..++||+..
T Consensus 142 -~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 142 -EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred -ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 2334789999999999999874 6788999984
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-08 Score=122.16 Aligned_cols=233 Identities=15% Similarity=0.053 Sum_probs=141.9
Q ss_pred CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCC---CcEEEEccCCCCccceeecCCCCCcccCCCCC
Q 000454 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D---GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~ 383 (1491)
..|.++|.. +.....+..+...+...+|+|+++ +|+.+... ..|.+||+.++......
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~---~la~~~~~~~~~~i~v~d~~~g~~~~~~--------------- 230 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQ---KLAYVSFESGKPEIYVQDLATGQREKVA--------------- 230 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCCCCC---EEEEEEcCCCCcEEEEEECCCCCEEEee---------------
Confidence 358888875 444455555777899999999998 66665543 47999999877532211
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEE-ecCCc--eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccc
Q 000454 384 PSSSAGPQSHQIFCCAFNANGTVFVT-GSSDT--LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 384 ~~~s~~~h~~~V~slafSPDG~~Las-Gs~DG--~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
.....+.+++|+|||+.|+. .+.++ .|++|++.++ ....+..+........|+|++
T Consensus 231 ------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~----------~~~~l~~~~~~~~~~~~s~dg----- 289 (417)
T TIGR02800 231 ------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK----------QLTRLTNGPGIDTEPSWSPDG----- 289 (417)
T ss_pred ------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC----------CEEECCCCCCCCCCEEECCCC-----
Confidence 12234566899999987764 44444 5888888642 123334444445567888875
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEe-CCC--eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceecc
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCS-RDG--SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS-~DG--tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1491)
..|+..+ ..| .|.+|++.+++ ...+.
T Consensus 290 ---------------------~~l~~~s~~~g~~~iy~~d~~~~~------------------------------~~~l~ 318 (417)
T TIGR02800 290 ---------------------KSIAFTSDRGGSPQIYMMDADGGE------------------------------VRRLT 318 (417)
T ss_pred ---------------------CEEEEEECCCCCceEEEEECCCCC------------------------------EEEee
Confidence 4555444 344 46666655321 11122
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeccc---eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeC
Q 000454 538 PTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG--KTIVWDI 612 (1491)
Q Consensus 538 ~h~~~VtsVafSPDG~~LaSGs~DG---~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DG--tIrIWDl 612 (1491)
.+...+..++|+|+|++|+.++.++ .|++||+.++... .+... .......|+|++..++++...++ .+.+.+.
T Consensus 319 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 319 FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 2334456789999999999988776 8999999876543 33322 22345689996555555554443 3455554
Q ss_pred CCCceEEEEeeCCcceEEEEE
Q 000454 613 WEGIPIRIYEISRFRLVDGKF 633 (1491)
Q Consensus 613 ~tGk~l~~l~~h~~~Vtslaf 633 (1491)
+|.....+....+.+..+.|
T Consensus 397 -~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 397 -DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred -CCceeeECCCCCCCcCCCCC
Confidence 45555555444444544444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.2e-08 Score=124.30 Aligned_cols=234 Identities=12% Similarity=0.005 Sum_probs=142.2
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCCceeeeccCCCceEEEEecCCCCce
Q 000454 266 LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 342 (1491)
Q Consensus 266 tIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D---GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~ 342 (1491)
.|.++|..... .+.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|+++
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~-- 274 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGK-- 274 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCC--
Confidence 67778875443 34555667889999999999998877543 358899998876533 222233445789999997
Q ss_pred EEEEEEeCCCc--EEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-Cc--eEE
Q 000454 343 YQLLSSSDDGT--CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--LAR 417 (1491)
Q Consensus 343 ~~LaSgS~DGt--VrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-DG--~Ir 417 (1491)
.++++.+.+|. |.+||+.+++..... .+.......+|+|||+.|+..+. ++ .|.
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt---------------------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy 333 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTRIT---------------------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIY 333 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEECc---------------------cCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 23345566675 777788766532111 12233456799999998876553 34 466
Q ss_pred EEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEE-eCCCeE--E
Q 000454 418 VWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC-SRDGSA--I 494 (1491)
Q Consensus 418 VWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSg-S~DGtI--r 494 (1491)
++++.++. ...+...........|+|++ +.|+.. ..++.. .
T Consensus 334 ~~dl~~g~----------~~~Lt~~g~~~~~~~~SpDG--------------------------~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 334 RVNLASGK----------VSRLTFEGEQNLGGSITPDG--------------------------RSMIMVNRTNGKFNIA 377 (448)
T ss_pred EEECCCCC----------EEEEecCCCCCcCeeECCCC--------------------------CEEEEEEecCCceEEE
Confidence 66664421 11221122223456888886 344443 334444 4
Q ss_pred EEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc-c--eEEEEECCC
Q 000454 495 IWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD-C--RICVWNAAD 571 (1491)
Q Consensus 495 IWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D-G--~IrIWDl~t 571 (1491)
++|+.++.. ..+... .......|+|||++|+..+.+ + .|++++. +
T Consensus 378 ~~dl~~g~~------------------------------~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~ 425 (448)
T PRK04792 378 RQDLETGAM------------------------------QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-D 425 (448)
T ss_pred EEECCCCCe------------------------------EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence 456554221 000000 011134799999998876543 2 4788887 6
Q ss_pred CceEEEEeCCCCCeEEEEEec
Q 000454 572 GSLVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 572 gkll~tL~gHs~~VtsLafSP 592 (1491)
|.....+..+.+.+...+|+|
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 777777777777778888987
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-08 Score=122.26 Aligned_cols=233 Identities=14% Similarity=0.032 Sum_probs=144.7
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCCceeeeccCCCceEEEEecCCCCce
Q 000454 266 LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 342 (1491)
Q Consensus 266 tIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D---GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~ 342 (1491)
.|.++|...+. ...+..+...+...+|+|||+.|+..+.+ ..|.+|++.++.... +....+.+...+|+|+++
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~-- 255 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGS-- 255 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCC--
Confidence 58888887544 45555677889999999999999887644 369999998886543 333344566789999997
Q ss_pred EEEE-EEeCCC--cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-Cc--eE
Q 000454 343 YQLL-SSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DT--LA 416 (1491)
Q Consensus 343 ~~La-SgS~DG--tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-DG--~I 416 (1491)
.|+ +...+| .|.+||+.++.... +. .+........|+|||+.|+..+. +| .|
T Consensus 256 -~la~~~~~~g~~~Iy~~d~~~~~~~~-lt--------------------~~~~~~~~~~~spDg~~i~f~s~~~g~~~i 313 (430)
T PRK00178 256 -KLAFVLSKDGNPEIYVMDLASRQLSR-VT--------------------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQI 313 (430)
T ss_pred -EEEEEEccCCCceEEEEECCCCCeEE-cc--------------------cCCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence 454 555555 57888988765322 11 11223455789999998776553 33 56
Q ss_pred EEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeC-CC--eE
Q 000454 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-DG--SA 493 (1491)
Q Consensus 417 rVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~-DG--tI 493 (1491)
+++++.++. ...+...........|+|++ +.|+..+. ++ .|
T Consensus 314 y~~d~~~g~----------~~~lt~~~~~~~~~~~Spdg--------------------------~~i~~~~~~~~~~~l 357 (430)
T PRK00178 314 YKVNVNGGR----------AERVTFVGNYNARPRLSADG--------------------------KTLVMVHRQDGNFHV 357 (430)
T ss_pred EEEECCCCC----------EEEeecCCCCccceEECCCC--------------------------CEEEEEEccCCceEE
Confidence 677765432 11111111223456788876 35544443 33 47
Q ss_pred EEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc---ceEEEEECC
Q 000454 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAA 570 (1491)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D---G~IrIWDl~ 570 (1491)
.+||+.++.. ..+. .........|+|||++|+..+.+ ..|+++++.
T Consensus 358 ~~~dl~tg~~------------------------------~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 358 AAQDLQRGSV------------------------------RILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EEEECCCCCE------------------------------EEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 7788775331 0000 01111235799999999887654 357888874
Q ss_pred CCceEEEEeCCCCCeEEEEEec
Q 000454 571 DGSLVHSLTGHTESTYVLDVHP 592 (1491)
Q Consensus 571 tgkll~tL~gHs~~VtsLafSP 592 (1491)
|.....+..+.+.+...+|+|
T Consensus 407 -g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 407 -GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred -CCceEECcCCCCCcCCCccCC
Confidence 555556665666777788877
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.8e-07 Score=108.04 Aligned_cols=317 Identities=13% Similarity=0.118 Sum_probs=184.8
Q ss_pred EEEEeCC----CeEEEEEC--CCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCC--C--ceee
Q 000454 258 VITGSDD----RLVKIWSM--ETAYCLASC-RGHEGDITDLAVSSNNALVASASN----DCIIRVWRLPDG--L--PISV 322 (1491)
Q Consensus 258 LATGS~D----GtIrIWDl--~Tg~~l~tL-~gH~~~VtsLafSPDG~lLASGS~----DGtIrVWDl~tg--k--~i~~ 322 (1491)
++.|+.. +.|.+|.+ .++++...- ..-......|+++|++++|.++.. .+.|..|.+... . .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4455554 68888887 555543221 123456778999999999999877 478999988653 2 2333
Q ss_pred eccCCCceEEEEecCCCCceEEEEEEe-CCCcEEEEccCC-CCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEE
Q 000454 323 LRGHTAAVTAIAFSPRPGSVYQLLSSS-DDGTCRIWDARY-SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1491)
Q Consensus 323 L~gHs~~VtsLaFSPdg~s~~~LaSgS-~DGtVrIWDl~t-g~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slaf 400 (1491)
..........++++|+++ +|+++. .+|.|.++++.. +........... .+.. ..........+.++.|
T Consensus 82 ~~~~g~~p~~i~~~~~g~---~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~----~g~g---~~~~rq~~~h~H~v~~ 151 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGR---FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH----EGSG---PNPDRQEGPHPHQVVF 151 (345)
T ss_dssp EEESSSCEEEEEECTTSS---EEEEEETTTTEEEEEEECTTSEEEEEEEEEES----EEEE---SSTTTTSSTCEEEEEE
T ss_pred eccCCCCcEEEEEecCCC---EEEEEEccCCeEEEEEccCCcccceeeeeccc----CCCC---CcccccccccceeEEE
Confidence 332345567899999987 555554 689999999987 333322111000 0000 0011223445789999
Q ss_pred CCCCCEEEEecC-CceEEEEeCCCCCCCCCCCCCceeeee-cCCCCCceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 401 NANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVL-SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 401 SPDG~~LasGs~-DG~IrVWDl~t~~~~~s~~~~~~i~~l-~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
+|+|++|++... ...|.+|++...... ......+ ......-..+.|+|++
T Consensus 152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~-----l~~~~~~~~~~G~GPRh~~f~pdg----------------------- 203 (345)
T PF10282_consen 152 SPDGRFVYVPDLGADRVYVYDIDDDTGK-----LTPVDSIKVPPGSGPRHLAFSPDG----------------------- 203 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEE-TTS-T-----EEEEEEEECSTTSSEEEEEE-TTS-----------------------
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCce-----EEEeeccccccCCCCcEEEEcCCc-----------------------
Confidence 999998877543 457999998642210 1111122 2333456788999886
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG 558 (1491)
...+++...+++|.++++..... .+.........+ .-.........|+++|||++|+++
T Consensus 204 --~~~Yv~~e~s~~v~v~~~~~~~g-----~~~~~~~~~~~~--------------~~~~~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 204 --KYAYVVNELSNTVSVFDYDPSDG-----SLTEIQTISTLP--------------EGFTGENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp --SEEEEEETTTTEEEEEEEETTTT-----EEEEEEEEESCE--------------TTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred --CEEEEecCCCCcEEEEeecccCC-----ceeEEEEeeecc--------------ccccccCCceeEEEecCCCEEEEE
Confidence 23456677789999998873221 111100000000 000111257789999999998886
Q ss_pred e-ccceEEEEECC--CCce--EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC--CCCceEEEEe-eCCcceEE
Q 000454 559 I-MDCRICVWNAA--DGSL--VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI--WEGIPIRIYE-ISRFRLVD 630 (1491)
Q Consensus 559 s-~DG~IrIWDl~--tgkl--l~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl--~tGk~l~~l~-~h~~~Vts 630 (1491)
. ....|.+|++. +|.+ +..+.........++++|++..++++.-.++.|.+|++ .+|.+...-. ..-....|
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~c 342 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVC 342 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEE
T ss_pred eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEE
Confidence 6 46689999983 3443 33444334447899999966555555567889999976 4676554442 23345667
Q ss_pred EEE
Q 000454 631 GKF 633 (1491)
Q Consensus 631 laf 633 (1491)
|.|
T Consensus 343 i~f 345 (345)
T PF10282_consen 343 IVF 345 (345)
T ss_dssp EEE
T ss_pred EeC
Confidence 766
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.2e-07 Score=119.35 Aligned_cols=364 Identities=13% Similarity=0.149 Sum_probs=213.5
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE------------------------EEEec----
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL------------------------ASCRG---- 283 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l------------------------~tL~g---- 283 (1491)
..+.+-.+ ...|.|++||||+..||....+++|.+-+-. ...+ ..|+|
T Consensus 112 ~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK 187 (928)
T PF04762_consen 112 EIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGK 187 (928)
T ss_pred eeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhh
Confidence 34444444 4689999999999999999989988876421 1111 01110
Q ss_pred --------------------CCCCeEEEEEcCCCCEEEEEEC---C---CeEEEEECCCCCceeeeccCCCceEEEEecC
Q 000454 284 --------------------HEGDITDLAVSSNNALVASASN---D---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337 (1491)
Q Consensus 284 --------------------H~~~VtsLafSPDG~lLASGS~---D---GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSP 337 (1491)
+...-..|+|-.||.|+|+.+. . ..|+||+- .|....+-..-.+--.+++|.|
T Consensus 188 ~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrP 266 (928)
T PF04762_consen 188 AAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRP 266 (928)
T ss_pred hhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCC
Confidence 2334567899999999998875 2 57999994 4665444443444456789999
Q ss_pred CCCceEEEEEEeC---CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCc
Q 000454 338 RPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT 414 (1491)
Q Consensus 338 dg~s~~~LaSgS~---DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG 414 (1491)
.|. +|++... .-.|.+|.- +|.....+.++. ......|..+.|++|+..||+...|.
T Consensus 267 sG~---lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~----------------~~~~~~v~~l~Wn~ds~iLAv~~~~~ 326 (928)
T PF04762_consen 267 SGN---LIASSQRLPDRHDVVFFER-NGLRHGEFTLRF----------------DPEEEKVIELAWNSDSEILAVWLEDR 326 (928)
T ss_pred CCC---EEEEEEEcCCCcEEEEEec-CCcEeeeEecCC----------------CCCCceeeEEEECCCCCEEEEEecCC
Confidence 997 6776654 344666653 333233332211 23456789999999999999977655
Q ss_pred eEEEEeCCCCCCCCCCCCCceeeeecC-CCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeE
Q 000454 415 LARVWNACKPNTDDSDQPNHEIDVLSG-HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSA 493 (1491)
Q Consensus 415 ~IrVWDl~t~~~~~s~~~~~~i~~l~g-H~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtI 493 (1491)
|.+|-..... +.....+.. ....+..+.|+|.. ...|...+.+|.+
T Consensus 327 -vqLWt~~NYH-------WYLKqei~~~~~~~~~~~~Wdpe~-------------------------p~~L~v~t~~g~~ 373 (928)
T PF04762_consen 327 -VQLWTRSNYH-------WYLKQEIRFSSSESVNFVKWDPEK-------------------------PLRLHVLTSNGQY 373 (928)
T ss_pred -ceEEEeeCCE-------EEEEEEEEccCCCCCCceEECCCC-------------------------CCEEEEEecCCcE
Confidence 9999886421 333333332 23345558998863 2355566555665
Q ss_pred EEEec----CCCCCC-----ccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceE
Q 000454 494 IIWIP----RSRRSH-----PKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI 564 (1491)
Q Consensus 494 rIWDl----~s~k~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I 564 (1491)
..+++ ...... +..... .-..+.+.+......|+. ...........|..++|++++..+++-..||.|
T Consensus 374 ~~~~~~~~v~~s~~~~~~D~g~vaVI-DG~~lllTpf~~a~VPPP--Ms~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l 450 (928)
T PF04762_consen 374 EIYDFAWDVSRSPGSSPNDNGTVAVI-DGNKLLLTPFRRAVVPPP--MSSYELELPSPVNDVAFSPSNSRFAVLTSDGSL 450 (928)
T ss_pred EEEEEEEEEEecCCCCccCceEEEEE-eCCeEEEecccccCCCch--HhceEEcCCCCcEEEEEeCCCCeEEEEECCCCE
Confidence 54332 211100 000000 000111111111111111 111223345679999999999989999999999
Q ss_pred EEEECCCCce--------EEEEe----------CCCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCc---eEEE
Q 000454 565 CVWNAADGSL--------VHSLT----------GHTESTYVLDVHPFNPRIAMSAGYD---GKTIVWDIWEGI---PIRI 620 (1491)
Q Consensus 565 rIWDl~tgkl--------l~tL~----------gHs~~VtsLafSPdd~~lLaSgS~D---GtIrIWDl~tGk---~l~~ 620 (1491)
.+|....... ...+. .....+..++|.. ...+++....+ ..|.++++.... .+..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 529 (928)
T PF04762_consen 451 SIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTLLVLSDSDSNQSKIVLVDIDDSENSASVES 529 (928)
T ss_pred EEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC-CCEEEEEEecCcccceEEEEEeccCCCceeEEE
Confidence 9998543221 11111 1233567788876 44444444443 678888885432 3333
Q ss_pred EeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 621 YEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 621 l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
.......+..+...++...++.-..+|.|...+....
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 530 STEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred EeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 3334455666666666665777788899987766544
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-08 Score=114.85 Aligned_cols=272 Identities=18% Similarity=0.261 Sum_probs=167.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-----EEEEEecCC------------CCeEEEEEcCCCC--EEEEE
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-----CLASCRGHE------------GDITDLAVSSNNA--LVASA 303 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~-----~l~tL~gH~------------~~VtsLafSPDG~--lLASG 303 (1491)
.+-|.+|.|..+|.+||||..+|.|.++.-.... ....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4678999999999999999999999999754322 233344443 4688899998765 55666
Q ss_pred ECCCeEEEEECCCCC-----------------------------------ceeee-ccCCCceEEEEecCCCCceEEEEE
Q 000454 304 SNDCIIRVWRLPDGL-----------------------------------PISVL-RGHTAAVTAIAFSPRPGSVYQLLS 347 (1491)
Q Consensus 304 S~DGtIrVWDl~tgk-----------------------------------~i~~L-~gHs~~VtsLaFSPdg~s~~~LaS 347 (1491)
+.|.+|++|.+.... +.+++ .+|+..|.+|.+..|.. .+++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E---t~lS 181 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE---TFLS 181 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc---eEee
Confidence 789999999874210 00111 25788899999999986 5665
Q ss_pred EeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCCCCCC
Q 000454 348 SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNT 426 (1491)
Q Consensus 348 gS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~t~~~ 426 (1491)
+ .|=.|-+|++.-......+.--.|.. ...-..-|++..|+|. .++|+-.+..|+|++.|++....
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~n------------mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPAN------------MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccC------------HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 5 46679999987443333221111110 0112345788889995 56888888999999999984321
Q ss_pred C-------CCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecC
Q 000454 427 D-------DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1491)
Q Consensus 427 ~-------~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~ 499 (1491)
- ..........-+..-...|..+.|++.| .++++ -.--+|++||+.
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG--------------------------ryils-RDyltvk~wD~n 301 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG--------------------------RYILS-RDYLTVKLWDLN 301 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCC--------------------------cEEEE-eccceeEEEecc
Confidence 1 0001111112233334567888898876 34443 334789999996
Q ss_pred CCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCC---eeEEEEcCCCCEEEEEeccceEEEEECCCCc
Q 000454 500 SRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRG---VNMIVWSLDNRFVLAAIMDCRICVWNAADGS 573 (1491)
Q Consensus 500 s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~---VtsVafSPDG~~LaSGs~DG~IrIWDl~tgk 573 (1491)
................ ..+..+. .... -..++|+-++.++++|+....+++|++..|.
T Consensus 302 me~~pv~t~~vh~~lr---------------~kLc~lY-EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 302 MEAKPVETYPVHEYLR---------------SKLCSLY-ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ccCCcceEEeehHhHH---------------HHHHHHh-hccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 4221110000000000 0000000 1111 2458899999999999999999999976553
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-07 Score=117.43 Aligned_cols=249 Identities=12% Similarity=0.043 Sum_probs=147.3
Q ss_pred CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCC--cEEEEccCCCCccceeecCCCCCcccCCCCCC
Q 000454 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DG--tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~ 384 (1491)
..|.+.|...+.. ..+......+..-+|+||++...++++...+| .|.+.++.+++......
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~--------------- 228 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA--------------- 228 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec---------------
Confidence 3577777654443 44544556677889999987332333444444 46777887765332221
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEecC-----CceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVTGSS-----DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~LasGs~-----DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~ 459 (1491)
..+.....+|+|||+.|+..+. +-.+.+|++..+.. .........+........|+|+|
T Consensus 229 ------~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~------g~~~~lt~~~~~~~~~p~wSPDG---- 292 (428)
T PRK01029 229 ------LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI------GKPRRLLNEAFGTQGNPSFSPDG---- 292 (428)
T ss_pred ------CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC------CcceEeecCCCCCcCCeEECCCC----
Confidence 1223446799999988876543 22344466643210 11122222233345678999987
Q ss_pred cccccCCCCCCCccccccccCCCeEEEE-eCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTC-SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSg-S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
..|+.. ..+|...+|.+.... .+.....+..
T Consensus 293 ----------------------~~Laf~s~~~g~~~ly~~~~~~--------------------------~g~~~~~lt~ 324 (428)
T PRK01029 293 ----------------------TRLVFVSNKDGRPRIYIMQIDP--------------------------EGQSPRLLTK 324 (428)
T ss_pred ----------------------CEEEEEECCCCCceEEEEECcc--------------------------cccceEEecc
Confidence 445544 456766666443100 0011122222
Q ss_pred CCCCeeEEEEcCCCCEEEEEecc---ceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEeCC
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGY--DGKTIVWDIW 613 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~D---G~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~--DGtIrIWDl~ 613 (1491)
....+...+|||||++|+....+ ..|++||+.+++.... ......+....|+|++..+++++.. ...|.+||+.
T Consensus 325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 33456778999999999876543 4699999998876543 3333456789999965555555543 3578899998
Q ss_pred CCceEEEEeeCCcceEEEEEcCCC
Q 000454 614 EGIPIRIYEISRFRLVDGKFSPDG 637 (1491)
Q Consensus 614 tGk~l~~l~~h~~~VtslafSPDG 637 (1491)
.++...... ..+.+...+|+|-.
T Consensus 404 ~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 404 TKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred CCCEEEeec-CCCcccCceecCCC
Confidence 777655443 45567778888854
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.8e-07 Score=106.92 Aligned_cols=283 Identities=14% Similarity=0.181 Sum_probs=171.8
Q ss_pred EEEEECC----CeEEEEEC--CCCCce--eeeccCCCceEEEEecCCCCceEEEEEEeC----CCcEEEEccCCC--Ccc
Q 000454 300 VASASND----CIIRVWRL--PDGLPI--SVLRGHTAAVTAIAFSPRPGSVYQLLSSSD----DGTCRIWDARYS--QFS 365 (1491)
Q Consensus 300 LASGS~D----GtIrVWDl--~tgk~i--~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~----DGtVrIWDl~tg--~~~ 365 (1491)
++.|+.. +.|.+|.+ .+++.. ..+ ........++++|+++ +|+++.. .|.|..|.+... .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~---~LY~~~e~~~~~g~v~~~~i~~~~g~L~ 77 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGR---RLYVVNEGSGDSGGVSSYRIDPDTGTLT 77 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSS---EEEEEETTSSTTTEEEEEEEETTTTEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCC---EEEEEEccccCCCCEEEEEECCCcceeE
Confidence 4555555 68998888 444322 221 1334556789999987 7777765 578999988764 221
Q ss_pred ceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec-CCceEEEEeCCCCCCCCCCCCCceeeee-----
Q 000454 366 PRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVL----- 439 (1491)
Q Consensus 366 ~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs-~DG~IrVWDl~t~~~~~s~~~~~~i~~l----- 439 (1491)
..-.. .........++++|++++|+++. .+|.|.+|++..... .......+
T Consensus 78 ~~~~~------------------~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~-----l~~~~~~~~~~g~ 134 (345)
T PF10282_consen 78 LLNSV------------------PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS-----LGEVVQTVRHEGS 134 (345)
T ss_dssp EEEEE------------------EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE-----EEEEEEEEESEEE
T ss_pred Eeeee------------------ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc-----cceeeeecccCCC
Confidence 11110 00344567899999999888775 589999999964210 01111111
Q ss_pred -----cCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeE-EEEeCCCeEEEEecCCCCCCccccccccc
Q 000454 440 -----SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI-VTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1491)
Q Consensus 440 -----~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~L-aSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1491)
........++.|+|++ +++ ++.-....|.+|++...... ...
T Consensus 135 g~~~~rq~~~h~H~v~~~pdg--------------------------~~v~v~dlG~D~v~~~~~~~~~~~-----l~~- 182 (345)
T PF10282_consen 135 GPNPDRQEGPHPHQVVFSPDG--------------------------RFVYVPDLGADRVYVYDIDDDTGK-----LTP- 182 (345)
T ss_dssp ESSTTTTSSTCEEEEEE-TTS--------------------------SEEEEEETTTTEEEEEEE-TTS-T-----EEE-
T ss_pred CCcccccccccceeEEECCCC--------------------------CEEEEEecCCCEEEEEEEeCCCce-----EEE-
Confidence 1123345678888876 344 44445567888888753210 000
Q ss_pred cccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe-ccceEEEEECC--CCce--EEEEeC----CC--
Q 000454 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAA--DGSL--VHSLTG----HT-- 582 (1491)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs-~DG~IrIWDl~--tgkl--l~tL~g----Hs-- 582 (1491)
..............++|+|+|+++++.. .++.|.+|++. ++.+ +..+.. ..
T Consensus 183 ------------------~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 183 ------------------VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp ------------------EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred ------------------eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence 0001123455688999999999987765 57789999987 4433 233321 11
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCC--CCc--eEEEEeeCCcceEEEEEcCCCCEEEEEe-CCCcEEEEEC--C
Q 000454 583 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW--EGI--PIRIYEISRFRLVDGKFSPDGASIILSD-DVGQLYILNT--G 655 (1491)
Q Consensus 583 ~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~--tGk--~l~~l~~h~~~VtslafSPDG~~LAsgs-~DG~I~IWdl--~ 655 (1491)
.....|+++|++..++++.-....|.+|++. +|. .+..+.........++|+|+|++|+++. .++.|.+|++ .
T Consensus 245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 2578899999666666666678899999993 343 3444544444578999999999999886 5678999876 4
Q ss_pred CCcc
Q 000454 656 QGES 659 (1491)
Q Consensus 656 tG~~ 659 (1491)
+|.+
T Consensus 325 tG~l 328 (345)
T PF10282_consen 325 TGKL 328 (345)
T ss_dssp TTEE
T ss_pred CCcE
Confidence 5543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-08 Score=121.15 Aligned_cols=234 Identities=15% Similarity=0.038 Sum_probs=143.1
Q ss_pred eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeC-CC--cEEEEccCCCCccceeecCCCCCcccCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DG--TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~-DG--tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~ 384 (1491)
.|.++|..... ...+..+...+.+..|+||++ .|+..+. ++ .|.+||+.+++......
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~---~La~~s~~~g~~~L~~~dl~tg~~~~lt~--------------- 259 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGR---KLAYVSFENRKAEIFVQDIYTQVREKVTS--------------- 259 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCC---EEEEEEecCCCcEEEEEECCCCCeEEecC---------------
Confidence 57777865443 345555677899999999997 5655443 33 58888988765322110
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEE-ecCCce--EEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVT-GSSDTL--ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~Las-Gs~DG~--IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s 461 (1491)
........+|+|||+.|+. ...+|. |++||+.++ ....+..+...+....|+|++
T Consensus 260 ------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg----------~~~~lt~~~~~~~~p~wSpDG------ 317 (448)
T PRK04792 260 ------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK----------ALTRITRHRAIDTEPSWHPDG------ 317 (448)
T ss_pred ------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC----------CeEECccCCCCccceEECCCC------
Confidence 1112336799999997765 455664 777777542 233344455566778899986
Q ss_pred cccCCCCCCCccccccccCCCeE-EEEeCCCe--EEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 462 LADSSKEDSTPKFKNSWFCHDNI-VTCSRDGS--AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~L-aSgS~DGt--IrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
..| ++...+|. |.++|+.+++ ...+..
T Consensus 318 --------------------~~I~f~s~~~g~~~Iy~~dl~~g~------------------------------~~~Lt~ 347 (448)
T PRK04792 318 --------------------KSLIFTSERGGKPQIYRVNLASGK------------------------------VSRLTF 347 (448)
T ss_pred --------------------CEEEEEECCCCCceEEEEECCCCC------------------------------EEEEec
Confidence 344 44444454 4445554322 111111
Q ss_pred CCCCeeEEEEcCCCCEEEEEecc-c--eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEeCC
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMD-C--RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK--TIVWDIW 613 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~D-G--~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGt--IrIWDl~ 613 (1491)
........+|+|||++|+..+.+ + .|.++|+.+++... +.... ......|+|++..++++...+|. |.++++
T Consensus 348 ~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~- 424 (448)
T PRK04792 348 EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI- 424 (448)
T ss_pred CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 11122346899999999886553 3 56778888876533 33221 22345799976666666666654 677787
Q ss_pred CCceEEEEeeCCcceEEEEEcC
Q 000454 614 EGIPIRIYEISRFRLVDGKFSP 635 (1491)
Q Consensus 614 tGk~l~~l~~h~~~VtslafSP 635 (1491)
+|.....+..+.+.+...+|||
T Consensus 425 ~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 425 DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCCceEECcCCCCCcCCCccCC
Confidence 6777777766666677888887
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.9e-08 Score=117.87 Aligned_cols=235 Identities=12% Similarity=0.041 Sum_probs=142.8
Q ss_pred eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCC---CcEEEEccCCCCccceeecCCCCCcccCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD---GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D---GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~ 384 (1491)
.|.++|...+. ...+..+...+...+|+|+++ .|+..+.+ ..|.+|++.++......
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~---~la~~s~~~~~~~l~~~~l~~g~~~~l~---------------- 239 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGK---RIAYVSFEQKRPRIFVQNLDTGRREQIT---------------- 239 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCC---EEEEEEcCCCCCEEEEEECCCCCEEEcc----------------
Confidence 47788876444 455555778899999999997 66655433 35888999877532211
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEE-ecCCc--eEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVT-GSSDT--LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~Las-Gs~DG--~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s 461 (1491)
...+.+...+|+|||+.|+. ...+| .|++||+.++. ...+..+........|+|++
T Consensus 240 -----~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~----------~~~lt~~~~~~~~~~~spDg------ 298 (430)
T PRK00178 240 -----NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ----------LSRVTNHPAIDTEPFWGKDG------ 298 (430)
T ss_pred -----CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC----------eEEcccCCCCcCCeEECCCC------
Confidence 01123446899999998874 44444 68888886532 23344455556677899886
Q ss_pred cccCCCCCCCccccccccCCCeEE-EEeCCC--eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 462 LADSSKEDSTPKFKNSWFCHDNIV-TCSRDG--SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~La-SgS~DG--tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
..|+ +...+| .|.++++.+++. ..+..
T Consensus 299 --------------------~~i~f~s~~~g~~~iy~~d~~~g~~------------------------------~~lt~ 328 (430)
T PRK00178 299 --------------------RTLYFTSDRGGKPQIYKVNVNGGRA------------------------------ERVTF 328 (430)
T ss_pred --------------------CEEEEEECCCCCceEEEEECCCCCE------------------------------EEeec
Confidence 3444 333444 455666654321 00000
Q ss_pred CCCCeeEEEEcCCCCEEEEEecc-c--eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCC
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMD-C--RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG--KTIVWDIW 613 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~D-G--~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DG--tIrIWDl~ 613 (1491)
........+|+|||++|+..... + .|.+||+.+++... +.. ........|+|++..++++...+| .|.++++
T Consensus 329 ~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~- 405 (430)
T PRK00178 329 VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI- 405 (430)
T ss_pred CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEEC-
Confidence 11122346899999999887643 2 58899998886533 321 222235689996655655554444 4667777
Q ss_pred CCceEEEEeeCCcceEEEEEcCC
Q 000454 614 EGIPIRIYEISRFRLVDGKFSPD 636 (1491)
Q Consensus 614 tGk~l~~l~~h~~~VtslafSPD 636 (1491)
+|.....+..+.+.+...+|||-
T Consensus 406 ~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 406 NGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCCceEECcCCCCCcCCCccCCC
Confidence 45555555545556777778763
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-06 Score=116.57 Aligned_cols=344 Identities=13% Similarity=0.175 Sum_probs=204.8
Q ss_pred CEEEEEEcCCCCEEE--EEeCCC--eEEEEECCCC---eEEEEEe-----cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 000454 245 AVYCAIFDRSGRYVI--TGSDDR--LVKIWSMETA---YCLASCR-----GHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 245 ~Vt~VaFSpDG~~LA--TGS~DG--tIrIWDl~Tg---~~l~tL~-----gH~~~VtsLafSPDG~lLASGS~DGtIrVW 312 (1491)
.+...+|.+....+. ++.... .|.+...... ..+..+. ...+.|.++.|-++...|+.+..+|.|.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 566667776554443 332222 3444433322 2333443 245789999999999999999999999999
Q ss_pred ----ECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCC--------------
Q 000454 313 ----RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS-------------- 374 (1491)
Q Consensus 313 ----Dl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~-------------- 374 (1491)
+..+.. +.....-...|.+++||||.. .|+.++.+++|.+..-. ...+....+....
T Consensus 103 ~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~E---lla~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 103 REDPDPDEDE-IEIVGSVDSGILAASWSPDEE---LLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EccCCCCCce-eEEEEEEcCcEEEEEECCCcC---EEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcc
Confidence 443332 223333457899999999998 88888888888876421 1111111110000
Q ss_pred -CcccCCCCCC--------C------CCCCCCCcceEEEEECCCCCEEEEecC---C---ceEEEEeCCCCCCCCCCCCC
Q 000454 375 -DAVAGRNMAP--------S------SSAGPQSHQIFCCAFNANGTVFVTGSS---D---TLARVWNACKPNTDDSDQPN 433 (1491)
Q Consensus 375 -~~~~g~~~~~--------~------~s~~~h~~~V~slafSPDG~~LasGs~---D---G~IrVWDl~t~~~~~s~~~~ 433 (1491)
....|..... . .... ....-..++|-.||.+||+.+. . ..|+||+-. +
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re----------G 246 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE----------G 246 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC----------c
Confidence 0000100000 0 0111 3445678999999999998874 2 478999874 1
Q ss_pred ceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeC---CCeEEEEecCCCCCCcccccc
Q 000454 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR---DGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 434 ~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~---DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
........-.+--.+++|.|.| +.|++... ...|.+|.-+..+ ++.
T Consensus 247 ~L~stSE~v~gLe~~l~WrPsG--------------------------~lIA~~q~~~~~~~VvFfErNGLr-hge---- 295 (928)
T PF04762_consen 247 ELQSTSEPVDGLEGALSWRPSG--------------------------NLIASSQRLPDRHDVVFFERNGLR-HGE---- 295 (928)
T ss_pred eEEeccccCCCccCCccCCCCC--------------------------CEEEEEEEcCCCcEEEEEecCCcE-eee----
Confidence 1222222223334567888876 45555443 2445566433211 110
Q ss_pred ccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCc--eEEEEeCC-CCCeEE
Q 000454 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS--LVHSLTGH-TESTYV 587 (1491)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgk--ll~tL~gH-s~~Vts 587 (1491)
....+......|..++|++|+..||+...|. |.+|-..+.. +.+.+... ...+..
T Consensus 296 ---------------------F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~ 353 (928)
T PF04762_consen 296 ---------------------FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNF 353 (928)
T ss_pred ---------------------EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCc
Confidence 0111123345689999999999999987665 9999987754 33444422 234455
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeC----CCCc--------eEEEEe-----------------------eCCcceEEEE
Q 000454 588 LDVHPFNPRIAMSAGYDGKTIVWDI----WEGI--------PIRIYE-----------------------ISRFRLVDGK 632 (1491)
Q Consensus 588 LafSPdd~~lLaSgS~DGtIrIWDl----~tGk--------~l~~l~-----------------------~h~~~Vtsla 632 (1491)
+.|+|..+..|.....+|.+.++++ ..+. .+..+. .-..+|.+++
T Consensus 354 ~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~va 433 (928)
T PF04762_consen 354 VKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVA 433 (928)
T ss_pred eEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEE
Confidence 9999988877777777677655432 2110 122111 1245789999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 633 FSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 633 fSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
|++++..+|+-..||.|.+|.....
T Consensus 434 f~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 434 FSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EeCCCCeEEEEECCCCEEEEEecCC
Confidence 9999998999999999999986543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.7e-08 Score=115.88 Aligned_cols=257 Identities=12% Similarity=0.161 Sum_probs=171.4
Q ss_pred EEEccCCC--CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 000454 237 KRVRGHRN--AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 237 ~tL~GH~~--~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl 314 (1491)
-.|.-|.. .|.-.-++.|-..++.-..|.+|-+...- |.... ++ -...-.+|+++.-..-|.+++....|+-+++
T Consensus 86 LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~hy~-~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNL 162 (703)
T KOG2321|consen 86 LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRHYR-TR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNL 162 (703)
T ss_pred eeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Ceeee-ee-cCcCCccccccCCCccEEEeecCcceEEEEc
Confidence 34445543 46666667676666666778877665432 32221 11 1122345555543333444455567999999
Q ss_pred CCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
+.|..+..|....+.+++|..++-.. +|++|+.+|.|.+||.++...+..+....... ..........
T Consensus 163 EqGrfL~P~~~~~~~lN~v~in~~hg---Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~---------s~pg~~~~~s 230 (703)
T KOG2321|consen 163 EQGRFLNPFETDSGELNVVSINEEHG---LLACGTEDGVVEFWDPRDKSRVGTLDAASSVN---------SHPGGDAAPS 230 (703)
T ss_pred cccccccccccccccceeeeecCccc---eEEecccCceEEEecchhhhhheeeecccccC---------CCccccccCc
Confidence 99999999998889999999999876 88889999999999999888777775432211 1112223446
Q ss_pred eEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccc
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1491)
|+++.|+.+|-.+++|+..|.|.|||+++... .+..-.+..-+|..+.|.+.+
T Consensus 231 vTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--------l~~kdh~~e~pi~~l~~~~~~------------------- 283 (703)
T KOG2321|consen 231 VTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--------LLVKDHGYELPIKKLDWQDTD------------------- 283 (703)
T ss_pred ceEEEecCCceeEEeeccCCcEEEEEcccCCc--------eeecccCCccceeeecccccC-------------------
Confidence 99999999999999999999999999986321 122222334467777776542
Q ss_pred cccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCE
Q 000454 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 554 (1491)
Q Consensus 475 ~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~ 554 (1491)
....+.......++|||-.+++... .......++.+|+-|++.+
T Consensus 284 ------~q~~v~S~Dk~~~kiWd~~~Gk~~a------------------------------siEpt~~lND~C~~p~sGm 327 (703)
T KOG2321|consen 284 ------QQNKVVSMDKRILKIWDECTGKPMA------------------------------SIEPTSDLNDFCFVPGSGM 327 (703)
T ss_pred ------CCceEEecchHHhhhcccccCCcee------------------------------eccccCCcCceeeecCCce
Confidence 1223333455688999988755221 1222345889999999999
Q ss_pred EEEEeccceEEEEECCC
Q 000454 555 VLAAIMDCRICVWNAAD 571 (1491)
Q Consensus 555 LaSGs~DG~IrIWDl~t 571 (1491)
+++|-.++.+..|=+..
T Consensus 328 ~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 328 FFTANESSKMHTYYIPS 344 (703)
T ss_pred EEEecCCCcceeEEccc
Confidence 99998887776665543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-06 Score=101.58 Aligned_cols=141 Identities=16% Similarity=0.125 Sum_probs=113.7
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeccc-eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000454 537 LPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 537 ~~h~~~VtsVafSPDG~~LaSGs~DG-~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG 615 (1491)
.++...|.-..+.-++.-++.|..|| .|-|+|..+++ +..+...-+.|.++..+| ++++++.+.....|.+.|+.+|
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCC
Confidence 45666788888888888999999999 89999998765 445556677899999999 7777778888889999999999
Q ss_pred ceEEEEeeCCcceEEEEEcCCCCEEEEEeCCC----cEEEEECCCCcccccc-----cceeeecCCCcceEEc
Q 000454 616 IPIRIYEISRFRLVDGKFSPDGASIILSDDVG----QLYILNTGQGESQKDA-----KYDQFFLGDYRPLVQD 679 (1491)
Q Consensus 616 k~l~~l~~h~~~VtslafSPDG~~LAsgs~DG----~I~IWdl~tG~~~~~~-----~~~~~fs~D~r~La~d 679 (1491)
.....-+...+-|+.+.|+|++++||-+--+| .|+++|+..++..... .++.+|.+|++.|.+-
T Consensus 434 nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 87666665667899999999999999886555 7899999998864422 3566888888887543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-07 Score=113.59 Aligned_cols=242 Identities=12% Similarity=0.058 Sum_probs=143.5
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE---EEECC--CeEEEEECCCCCceeeeccCCCceEEEEecCCC
Q 000454 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA---SASND--CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP 339 (1491)
Q Consensus 265 GtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLA---SGS~D--GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg 339 (1491)
..|.+.|...+. ...+......+.+-+|+|||+.++ +...+ ..|.+.++.+++.... ....+.....+|+|||
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCC
Confidence 467788876444 344554566678889999997522 33333 3578889887765433 3345556678999999
Q ss_pred CceEEEEEEe-CCC----cEEEEccCCCCc--cceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec-
Q 000454 340 GSVYQLLSSS-DDG----TCRIWDARYSQF--SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS- 411 (1491)
Q Consensus 340 ~s~~~LaSgS-~DG----tVrIWDl~tg~~--~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs- 411 (1491)
+ .|+..+ .+| .+.+|++..+.. ...+. ..........+|+|||+.|+..+
T Consensus 243 ~---~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-------------------~~~~~~~~~p~wSPDG~~Laf~s~ 300 (428)
T PRK01029 243 K---LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-------------------NEAFGTQGNPSFSPDGTRLVFVSN 300 (428)
T ss_pred C---EEEEEECCCCCcceeEEEeecccCCCCcceEee-------------------cCCCCCcCCeEECCCCCEEEEEEC
Confidence 7 555443 223 344466654321 11110 01112235679999999877665
Q ss_pred CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeC-C
Q 000454 412 SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR-D 490 (1491)
Q Consensus 412 ~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~-D 490 (1491)
.+|...||.+.... .......+..+...+....|+|++ +.|+..+. +
T Consensus 301 ~~g~~~ly~~~~~~------~g~~~~~lt~~~~~~~~p~wSPDG--------------------------~~Laf~~~~~ 348 (428)
T PRK01029 301 KDGRPRIYIMQIDP------EGQSPRLLTKKYRNSSCPAWSPDG--------------------------KKIAFCSVIK 348 (428)
T ss_pred CCCCceEEEEECcc------cccceEEeccCCCCccceeECCCC--------------------------CEEEEEEcCC
Confidence 46655555442100 011233344455567788999987 45554433 2
Q ss_pred --CeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec---cceEE
Q 000454 491 --GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM---DCRIC 565 (1491)
Q Consensus 491 --GtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~---DG~Ir 565 (1491)
..|.+||+.+++. ..+......+....|+|||++|+.... ...|+
T Consensus 349 g~~~I~v~dl~~g~~------------------------------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 349 GVRQICVYDLATGRD------------------------------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred CCcEEEEEECCCCCe------------------------------EEccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 3688888876431 111112224566899999998876443 35799
Q ss_pred EEECCCCceEEEEeCCCCCeEEEEEecC
Q 000454 566 VWNAADGSLVHSLTGHTESTYVLDVHPF 593 (1491)
Q Consensus 566 IWDl~tgkll~tL~gHs~~VtsLafSPd 593 (1491)
+||+.+++...... ..+.+...+|+|.
T Consensus 399 ~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~ 425 (428)
T PRK01029 399 LISLITKKTRKIVI-GSGEKRFPSWGAF 425 (428)
T ss_pred EEECCCCCEEEeec-CCCcccCceecCC
Confidence 99998877554443 4455677888874
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-09 Score=123.46 Aligned_cols=174 Identities=18% Similarity=0.257 Sum_probs=135.1
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC-------CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 000454 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME-------TAYCLASCRGHEGDITDLAVSSNNALVASASNDCI 308 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~-------Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGt 308 (1491)
+..+.||+..|.+++--.+.+-+++++.|.+|++|.+. |..+..++..|..+|.++.|-.+.++++++ ||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 45678999999999988888899999999999999985 335788899999999999999999888875 788
Q ss_pred EEEEECCCCCceeeec--cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 309 IRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 309 IrVWDl~tgk~i~~L~--gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
|.+||.--|+++.... ...+.+..+...++-.....++-++...+|+++|.+.+.....+.+-.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn-------------- 871 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN-------------- 871 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc--------------
Confidence 9999988787766432 122344444444442222234445788999999999988777664321
Q ss_pred CCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCC
Q 000454 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNT 426 (1491)
Q Consensus 387 s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~ 426 (1491)
..+....+.+++..+.|++++++-..|.|.+.|.+++..
T Consensus 872 -a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 872 -APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred -CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce
Confidence 123456789999999999999999999999999988643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-07 Score=114.46 Aligned_cols=293 Identities=13% Similarity=0.149 Sum_probs=196.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC---------------ceeeeccCCCceEEEEecCCCCceEEEEEE
Q 000454 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL---------------PISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk---------------~i~~L~gHs~~VtsLaFSPdg~s~~~LaSg 348 (1491)
......|++|+....+||+|+.||.++|..+.+.. .-+++.||.+.|.-+.|..... .|-+.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q---KLTtS 89 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ---KLTTS 89 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc---ccccc
Confidence 34567899999999999999999999999876531 1246789999999999999876 89999
Q ss_pred eCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCC
Q 000454 349 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDD 428 (1491)
Q Consensus 349 S~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~ 428 (1491)
..+|.|.+|-+-.+........ ......|.+++|+.||..|+....||.|.|=.+......
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiN------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIw- 150 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMIN------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIW- 150 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhh------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceec-
Confidence 9999999999988776554422 224567899999999999999999999877666432111
Q ss_pred CCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccc
Q 000454 429 SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAA 508 (1491)
Q Consensus 429 s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~ 508 (1491)
++. +. ......+.|+++. ..++.+-..|.+.++|....
T Consensus 151 ----gKe---Lk--g~~l~hv~ws~D~--------------------------~~~Lf~~ange~hlydnqgn------- 188 (1189)
T KOG2041|consen 151 ----GKE---LK--GQLLAHVLWSEDL--------------------------EQALFKKANGETHLYDNQGN------- 188 (1189)
T ss_pred ----chh---cc--hheccceeecccH--------------------------HHHHhhhcCCcEEEeccccc-------
Confidence 111 11 1123467888874 34455556688888886631
Q ss_pred ccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEE--------cCCCCEEEEEeccceEEEEECCCCceEEEEeC
Q 000454 509 RWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW--------SLDNRFVLAAIMDCRICVWNAADGSLVHSLTG 580 (1491)
Q Consensus 509 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf--------SPDG~~LaSGs~DG~IrIWDl~tgkll~tL~g 580 (1491)
+...+........ ...+......|..+.| -||-..|+++-.+|.+.|..-.+......+..
T Consensus 189 -F~~Kl~~~c~Vn~----------tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt 257 (1189)
T KOG2041|consen 189 -FERKLEKDCEVNG----------TGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT 257 (1189)
T ss_pred -HHHhhhhceEEee----------eeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec
Confidence 1111110000000 0000001111222333 35778899999999988876544332222221
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCC---------CcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 000454 581 HTESTYVLDVHPFNPRIAMSAGYD---------GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYI 651 (1491)
Q Consensus 581 Hs~~VtsLafSPdd~~lLaSgS~D---------GtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~I 651 (1491)
.-.|..+.|++ ++.+|+.+|.+ +.|.+|.. -|..+.+++.....|+.++|-..|-.+|.+- |+.|++
T Consensus 258 -gm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyf 333 (1189)
T KOG2041|consen 258 -GMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYF 333 (1189)
T ss_pred -ccEeecceecC-CCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEE
Confidence 24578889999 77788888754 35666665 6888899998888999999998888887765 477877
Q ss_pred EECC
Q 000454 652 LNTG 655 (1491)
Q Consensus 652 Wdl~ 655 (1491)
=++.
T Consensus 334 anIR 337 (1189)
T KOG2041|consen 334 ANIR 337 (1189)
T ss_pred Eeec
Confidence 6664
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-06 Score=103.42 Aligned_cols=274 Identities=9% Similarity=0.022 Sum_probs=164.5
Q ss_pred cccceeEEEEccCCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeEEEEEecC-------CCCeEEEE
Q 000454 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSD----------DRLVKIWSMETAYCLASCRGH-------EGDITDLA 292 (1491)
Q Consensus 230 v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~----------DGtIrIWDl~Tg~~l~tL~gH-------~~~VtsLa 292 (1491)
..+++.+.++..-..+-. + ++|||+.|..+.. +..|.|||+.+++.+..+.-. ......++
T Consensus 34 ~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ 111 (352)
T TIGR02658 34 GEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTS 111 (352)
T ss_pred CCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEE
Confidence 345666777764333332 4 9999998877654 789999999999999988742 22334789
Q ss_pred EcCCCCEEEEEE-C-CCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeec
Q 000454 293 VSSNNALVASAS-N-DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370 (1491)
Q Consensus 293 fSPDG~lLASGS-~-DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~ 370 (1491)
++|||++|+... . +..|-|.|+.+++.+..+... +...-+..+... +.+-+.||......+...........
T Consensus 112 ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~-----~~~~~~Dg~~~~v~~d~~g~~~~~~~ 185 (352)
T TIGR02658 112 LTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDT-----FFMHCRDGSLAKVGYGTKGNPKIKPT 185 (352)
T ss_pred ECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCc-----cEEEeecCceEEEEecCCCceEEeee
Confidence 999999988765 3 689999999999988877642 222222232221 22333444444433322111111000
Q ss_pred CCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEE
Q 000454 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449 (1491)
Q Consensus 371 ~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sV 449 (1491)
+ ...+.. ... ...+ .|.+ +|+++.+... |.|.+.|+..... ..
T Consensus 186 ~----vf~~~~----~~v--~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~----------~~----------- 229 (352)
T TIGR02658 186 E----VFHPED----EYL--INHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDA----------KF----------- 229 (352)
T ss_pred e----eecCCc----ccc--ccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcc----------ee-----------
Confidence 0 000000 000 0111 3345 7887777766 8899888743110 00
Q ss_pred EEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCC
Q 000454 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1491)
Q Consensus 450 afSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~ 529 (1491)
...|.+-+.. .....|
T Consensus 230 -------------------------------------------~~~~~~~~~~--~~~~~w------------------- 245 (352)
T TIGR02658 230 -------------------------------------------LPAIEAFTEA--EKADGW------------------- 245 (352)
T ss_pred -------------------------------------------cceeeecccc--cccccc-------------------
Confidence 0011100000 000000
Q ss_pred CCCceeccCCCCCeeEEEEcCCCCEEEEEe----------ccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCC-cEE
Q 000454 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAI----------MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP-RIA 598 (1491)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~LaSGs----------~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~-~lL 598 (1491)
....+.-++++++|+.++++. ..+.|.++|..+++.+..+.. ...+..|+++|++. .++
T Consensus 246 ---------rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~ly 315 (352)
T TIGR02658 246 ---------RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLY 315 (352)
T ss_pred ---------CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEE
Confidence 122334488999999888853 124799999999999998863 34688999999666 444
Q ss_pred EEEeCCCcEEEEeCCCCceEEEE
Q 000454 599 MSAGYDGKTIVWDIWEGIPIRIY 621 (1491)
Q Consensus 599 aSgS~DGtIrIWDl~tGk~l~~l 621 (1491)
++...++.|.|.|+.+++.++.+
T Consensus 316 vtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 316 ALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EeCCCCCcEEEEECcCCeEEeee
Confidence 45557899999999999999998
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.6e-08 Score=110.34 Aligned_cols=309 Identities=13% Similarity=0.230 Sum_probs=185.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSME----TAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~----Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk 318 (1491)
..+++++.+.+..+.|+.|-..|+|.-+.+. ....++.+..|...|..+.|+-...++++.+.|..+.--..+.+.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~ 147 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN 147 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence 4679999999999999999999999988764 345566667899999999999999999999999876655666655
Q ss_pred ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEE
Q 000454 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1491)
Q Consensus 319 ~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sl 398 (1491)
.+..+.- ....+++.|.- .+...|...|.|..-.+....+.. .....+|...+.++
T Consensus 148 ~lg~Y~~-~~~~t~~~~d~-----~~~fvGd~~gqvt~lr~~~~~~~~------------------i~~~~~h~~~~~~l 203 (404)
T KOG1409|consen 148 RLGGYNF-ETPASALQFDA-----LYAFVGDHSGQITMLKLEQNGCQL------------------ITTFNGHTGEVTCL 203 (404)
T ss_pred cccceEe-eccCCCCceee-----EEEEecccccceEEEEEeecCCce------------------EEEEcCcccceEEE
Confidence 4432210 00011111110 023334444555444333222111 12235688999999
Q ss_pred EECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 399 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 399 afSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
+|.+...+|.+|..|..|.+||+... ......+.+|.+.|..+...+..
T Consensus 204 ~Wd~~~~~LfSg~~d~~vi~wdigg~--------~g~~~el~gh~~kV~~l~~~~~t----------------------- 252 (404)
T KOG1409|consen 204 KWDPGQRLLFSGASDHSVIMWDIGGR--------KGTAYELQGHNDKVQALSYAQHT----------------------- 252 (404)
T ss_pred EEcCCCcEEEeccccCceEEEeccCC--------cceeeeeccchhhhhhhhhhhhh-----------------------
Confidence 99999999999999999999999532 33566788999999888776543
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCC------CCCCCceec-cCCCCCeeEEEEcCC
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQP------PRGGPRQRI-LPTPRGVNMIVWSLD 551 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~l-~~h~~~VtsVafSPD 551 (1491)
..+++++.||.|.+|+++..+. ....|.......-...+..... ...+..+.. ..-...|...+-+..
T Consensus 253 ---~~l~S~~edg~i~~w~mn~~r~--etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~ 327 (404)
T KOG1409|consen 253 ---RQLISCGEDGGIVVWNMNVKRV--ETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNR 327 (404)
T ss_pred ---eeeeeccCCCeEEEEeccceee--cCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCc
Confidence 5899999999999999986442 2233332221111111110000 000000000 001112222222222
Q ss_pred CCEEEEEeccceEEEEECC-------CCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 552 NRFVLAAIMDCRICVWNAA-------DGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 552 G~~LaSGs~DG~IrIWDl~-------tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
..+ .+-+..-.+++.|.. +..++..+..-...|+.+.+-. .-.+|+|+|.|..|+|||+.
T Consensus 328 ~~~-p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe-tlglLvTsG~~Rvi~iwd~~ 394 (404)
T KOG1409|consen 328 SSY-PTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE-TLGLLVTSGTDRVIKIWDVR 394 (404)
T ss_pred ccc-ccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh-hccceeecCCceEEEEEech
Confidence 112 222223344444431 1223444332233578887766 44677899999999999985
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.8e-08 Score=115.98 Aligned_cols=185 Identities=15% Similarity=0.127 Sum_probs=132.1
Q ss_pred CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeee--cCCCCCceEEEEccCccccccccccCCCCCCCccccccccC
Q 000454 403 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL--SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480 (1491)
Q Consensus 403 DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l--~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~ 480 (1491)
+-..++-|...|.|.+|++..++ ....+ ..|.+.|.++.++...
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~---------it~~~st~~h~~~v~~~~~~~~~------------------------- 114 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGE---------ITAKLSTDKHYGNVNEILDAQRL------------------------- 114 (541)
T ss_pred CceEEEeecCCccEEEEEecCCe---------EEEEEecCCCCCcceeeeccccc-------------------------
Confidence 45578888899999999997532 22233 4789999999988653
Q ss_pred CCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec
Q 000454 481 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM 560 (1491)
Q Consensus 481 ~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~ 560 (1491)
..|.+++.|+.+..|++...+. ..........+.+++++|||..+++|+
T Consensus 115 -~ciyS~~ad~~v~~~~~~~~~~-----------------------------~~~~~~~~~~~~sl~is~D~~~l~~as- 163 (541)
T KOG4547|consen 115 -GCIYSVGADLKVVYILEKEKVI-----------------------------IRIWKEQKPLVSSLCISPDGKILLTAS- 163 (541)
T ss_pred -CceEecCCceeEEEEeccccee-----------------------------eeeeccCCCccceEEEcCCCCEEEecc-
Confidence 4799999999999999886431 222334455688899999999999886
Q ss_pred cceEEEEECCCCceEEEEeCCCCCeEEEEEecC-----CCcEEEEEeCCCcEEEEeCCC----CceEEEEeeCCcceEEE
Q 000454 561 DCRICVWNAADGSLVHSLTGHTESTYVLDVHPF-----NPRIAMSAGYDGKTIVWDIWE----GIPIRIYEISRFRLVDG 631 (1491)
Q Consensus 561 DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPd-----d~~lLaSgS~DGtIrIWDl~t----Gk~l~~l~~h~~~Vtsl 631 (1491)
+.|++||+.+++.+.+|.||.++|.++.|.-. +.++|.++..+..|.+|-+.. +.....+...+-+|+.=
T Consensus 164 -~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~d 242 (541)
T KOG4547|consen 164 -RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTSD 242 (541)
T ss_pred -ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEec
Confidence 57999999999999999999999999999875 456776777777888897654 23444555444455432
Q ss_pred EE-cCCCC--E-EEEEeCCCcEEEEE
Q 000454 632 KF-SPDGA--S-IILSDDVGQLYILN 653 (1491)
Q Consensus 632 af-SPDG~--~-LAsgs~DG~I~IWd 653 (1491)
.+ ..|+. + ||+....|.+.++.
T Consensus 243 s~~~ed~~~~l~lAst~~~g~v~~~~ 268 (541)
T KOG4547|consen 243 SGLLEDGTIPLVLASTLIPGIVHLKL 268 (541)
T ss_pred cccccccccceEEeeeccCceeeecc
Confidence 22 33444 3 33444455555444
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.8e-08 Score=116.49 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=139.3
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeEEEEEec---CCCCeEEEEE--------------------cCCCCEEEEEECCCe
Q 000454 252 DRSGRYVITGSDDRLVKIWSMETAYCLASCRG---HEGDITDLAV--------------------SSNNALVASASNDCI 308 (1491)
Q Consensus 252 SpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~g---H~~~VtsLaf--------------------SPDG~lLASGS~DGt 308 (1491)
.|-+.++|....||.++||++.++++...+.. -.+..++..| +.|-..||-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 45678999999999999999999988776652 2344455555 223447888888999
Q ss_pred EEEEECCCCCceeeec--cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 309 IRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 309 IrVWDl~tgk~i~~L~--gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
|.+|++..|+....+. .|.+.|.++.++.+-. .|.+++.|+.|..|+...........
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~---ciyS~~ad~~v~~~~~~~~~~~~~~~----------------- 141 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG---CIYSVGADLKVVYILEKEKVIIRIWK----------------- 141 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccC---ceEecCCceeEEEEecccceeeeeec-----------------
Confidence 9999999998887776 6899999999999876 89999999999999998887665543
Q ss_pred CCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 387 s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
.....+.+++++|||..+++++ +.|.+|++.+ .+.+..+.+|.+.|.++.|.-.
T Consensus 142 ---~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~---------kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 142 ---EQKPLVSSLCISPDGKILLTAS--RQIKVLDIET---------KEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ---cCCCccceEEEcCCCCEEEecc--ceEEEEEccC---------ceEEEEecCCCcceEEEEEEEe
Confidence 2455688999999999999886 6799999976 6788999999999999999754
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.7e-08 Score=120.79 Aligned_cols=288 Identities=19% Similarity=0.216 Sum_probs=188.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEEe-cCCCCeEEEEEcCCCC---EEEEEECCCeEEEEECCCC
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMET-AYCLASCR-GHEGDITDLAVSSNNA---LVASASNDCIIRVWRLPDG 317 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T-g~~l~tL~-gH~~~VtsLafSPDG~---lLASGS~DGtIrVWDl~tg 317 (1491)
.+++.++.++|.|+-+|.++.-|. .|-|+.. +....-+. -..-.|-++.|+|... ++++. ....-.||++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVst-s~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVST-SNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEec-CcchhhhhhhhcC
Confidence 467899999999999999998874 4556543 33333332 1133577788888543 44444 4456789998643
Q ss_pred ---CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 318 ---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 318 ---k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
..-..+.+|+..|+.+.|.|... ..|++++.|-.|..||++........ .......
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~p--dVlatcsvdt~vh~wd~rSp~~p~ys-------------------~~~w~s~ 160 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHP--DVLATCSVDTYVHAWDMRSPHRPFYS-------------------TSSWRSA 160 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCC--cceeeccccccceeeeccCCCcceee-------------------eeccccc
Confidence 33456779999999999999865 48999999999999999876532221 1112334
Q ss_pred eEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccc
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1491)
...+.|+-....+.+.+....|.+||++.+ ..++..+++|...|+.+.|..--
T Consensus 161 asqVkwnyk~p~vlasshg~~i~vwd~r~g--------s~pl~s~K~~vs~vn~~~fnr~~------------------- 213 (1081)
T KOG0309|consen 161 ASQVKWNYKDPNVLASSHGNDIFVWDLRKG--------STPLCSLKGHVSSVNSIDFNRFK------------------- 213 (1081)
T ss_pred CceeeecccCcchhhhccCCceEEEeccCC--------CcceEEecccceeeehHHHhhhh-------------------
Confidence 566788775445555566778999999875 34677888899899888887432
Q ss_pred cccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC-
Q 000454 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR- 553 (1491)
Q Consensus 475 ~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~- 553 (1491)
...+.+++.||+|+.||....... |. .......+|..-.+-|-|.
T Consensus 214 ------~s~~~s~~~d~tvkfw~y~kSt~e-----~~-----------------------~~vtt~~piw~~r~~Pfg~g 259 (1081)
T KOG0309|consen 214 ------YSEIMSSSNDGTVKFWDYSKSTTE-----SK-----------------------RTVTTNFPIWRGRYLPFGEG 259 (1081)
T ss_pred ------hhhhcccCCCCceeeecccccccc-----cc-----------------------eeccccCcceeccccccCce
Confidence 357899999999999998753211 11 1111222233333333222
Q ss_pred ----------EEEEEeccceEEEEECCC-CceEEEEeCCCCCeEEEEEecC---------CCcEEEEEeCCCcEEEEeCC
Q 000454 554 ----------FVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPF---------NPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 554 ----------~LaSGs~DG~IrIWDl~t-gkll~tL~gHs~~VtsLafSPd---------d~~lLaSgS~DGtIrIWDl~ 613 (1491)
.+..---+.....|+..+ .+++++|.||.+.|....|-.. ....|+|-+.|..+++|-+.
T Consensus 260 ~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 260 YCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 111111222334455544 4789999999998876666321 12478899999999999875
Q ss_pred C
Q 000454 614 E 614 (1491)
Q Consensus 614 t 614 (1491)
+
T Consensus 340 ~ 340 (1081)
T KOG0309|consen 340 S 340 (1081)
T ss_pred H
Confidence 3
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.8e-06 Score=96.10 Aligned_cols=167 Identities=15% Similarity=0.169 Sum_probs=117.5
Q ss_pred CCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEeCCCCceEEEEeeCCcceE
Q 000454 551 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG-KTIVWDIWEGIPIRIYEISRFRLV 629 (1491)
Q Consensus 551 DG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DG-tIrIWDl~tGk~l~~l~~h~~~Vt 629 (1491)
+|.+++..+ -|...|.+.-.+-.++. +|.+.|.-..+..+ +.-++.|..|| .|-|+|..+++ +..+...-+.|.
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~ 405 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIE 405 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCeeEEc--CCCCceEEEEEccC-CcceEEeccCCceEEEEecCCce-EEEeeCCccceE
Confidence 577777765 45677776655544443 57777877777763 44666788898 99999996665 445555778999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcc------cccccceeeecCCCcceEEc-cCCCEEEccccccCccccCCCcc
Q 000454 630 DGKFSPDGASIILSDDVGQLYILNTGQGES------QKDAKYDQFFLGDYRPLVQD-TYGNVLDQETQLAPHRRNLQDPL 702 (1491)
Q Consensus 630 slafSPDG~~LAsgs~DG~I~IWdl~tG~~------~~~~~~~~~fs~D~r~La~d-~~G~vLde~tq~~p~Lw~l~~~l 702 (1491)
+++.+|||++++++.....|++.|+.+|.. ...+..+..|+++.++++.. +.|.+. +..++.++..+.
T Consensus 406 av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~t-----q~Iklydm~~~K 480 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYT-----QSIKLYDMDGGK 480 (668)
T ss_pred EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceee-----eeEEEEecCCCe
Confidence 999999999999999999999999999975 23556778999999999876 444442 334566654432
Q ss_pred c-cccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEe
Q 000454 703 C-DSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVG 740 (1491)
Q Consensus 703 ~-d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg 740 (1491)
. +++ .|..- -.+-+|.|||++|---
T Consensus 481 iy~vT-T~ta~------------DfsPaFD~d~ryLYfL 506 (668)
T COG4946 481 IYDVT-TPTAY------------DFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEEec-CCccc------------ccCcccCCCCcEEEEE
Confidence 2 222 12211 1236899999998754
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-06 Score=103.57 Aligned_cols=267 Identities=15% Similarity=0.108 Sum_probs=159.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceE--
Q 000454 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVT-- 331 (1491)
Q Consensus 254 DG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~Vt-- 331 (1491)
++..++.++.+|.|..||..+|+.+...... ..+.+.-.. .+..++.++.+|.|..||..+|+.+..+......+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 4677888889999999999999998776532 222221111 345677778899999999999998877654322111
Q ss_pred ---EEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcce-EEEEECCCCCEE
Q 000454 332 ---AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI-FCCAFNANGTVF 407 (1491)
Q Consensus 332 ---sLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V-~slafSPDG~~L 407 (1491)
+..+. + . .++.+..+|.|..+|+.+++.........+. +... . .....+ ....+ .+..+
T Consensus 182 ~~~sp~~~-~-~---~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~----g~~~--~----~~~~~~~~~p~~--~~~~v 244 (377)
T TIGR03300 182 GSASPVIA-D-G---GVLVGFAGGKLVALDLQTGQPLWEQRVALPK----GRTE--L----ERLVDVDGDPVV--DGGQV 244 (377)
T ss_pred CCCCCEEE-C-C---EEEEECCCCEEEEEEccCCCEeeeeccccCC----CCCc--h----hhhhccCCccEE--ECCEE
Confidence 11111 2 2 5778888899999999998765443211100 0000 0 000000 00111 24567
Q ss_pred EEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEE
Q 000454 408 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC 487 (1491)
Q Consensus 408 asGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSg 487 (1491)
++++.+|.++.||..+++ .+-... . ....... ..++.++.+
T Consensus 245 y~~~~~g~l~a~d~~tG~---------~~W~~~-~-~~~~~p~----------------------------~~~~~vyv~ 285 (377)
T TIGR03300 245 YAVSYQGRVAALDLRSGR---------VLWKRD-A-SSYQGPA----------------------------VDDNRLYVT 285 (377)
T ss_pred EEEEcCCEEEEEECCCCc---------EEEeec-c-CCccCce----------------------------EeCCEEEEE
Confidence 778889999999997642 111111 0 0000111 113578888
Q ss_pred eCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEE
Q 000454 488 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 567 (1491)
Q Consensus 488 S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIW 567 (1491)
+.+|.+..+|..+++.. |.... + .......... .+..|++++.+|.|++|
T Consensus 286 ~~~G~l~~~d~~tG~~~-----W~~~~---------------------~--~~~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 286 DADGVVVALDRRSGSEL-----WKNDE---------------------L--KYRQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred CCCCeEEEEECCCCcEE-----Ecccc---------------------c--cCCccccCEE--ECCEEEEEeCCCEEEEE
Confidence 89999999999875521 22100 0 0001111122 35688899999999999
Q ss_pred ECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 000454 568 NAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVW 610 (1491)
Q Consensus 568 Dl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIW 610 (1491)
|..+|+.+..+..+...+..--... +++ |+.++.||.|..|
T Consensus 336 d~~tG~~~~~~~~~~~~~~~sp~~~-~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 336 SREDGSFVARLKTDGSGIASPPVVV-GDG-LLVQTRDGDLYAF 376 (377)
T ss_pred ECCCCCEEEEEEcCCCccccCCEEE-CCE-EEEEeCCceEEEe
Confidence 9999999999887665433322222 344 5568889988775
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-08 Score=130.89 Aligned_cols=226 Identities=12% Similarity=0.216 Sum_probs=168.8
Q ss_pred CCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCc
Q 000454 297 NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1491)
Q Consensus 297 G~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~ 376 (1491)
++.+.....++...-|..+-+.. .++.+-..|.++.-+|... +.++|+.||.|++|....++.+..+..
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~---~Yltgs~dgsv~~~~w~~~~~v~~~rt------ 2248 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDP---YYLTGSQDGSVRMFEWGHGQQVVCFRT------ 2248 (2439)
T ss_pred cccCCcccCCccccceeccccee--EeecccCceeeecCCCCCc---eEEecCCCceEEEEeccCCCeEEEeec------
Confidence 34444445555556565433222 2333556788888888766 889999999999999988876655532
Q ss_pred ccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcc
Q 000454 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1491)
Q Consensus 377 ~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~ 456 (1491)
.....|+.+.|+.+|+.+..+..||.+.+|.+. .++......|......+.|-..
T Consensus 2249 -------------~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~----------pk~~~s~qchnk~~~Df~Fi~s-- 2303 (2439)
T KOG1064|consen 2249 -------------AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS----------PKPYTSWQCHNKALSDFRFIGS-- 2303 (2439)
T ss_pred -------------cCcchhhhhhhcccCCceeeeccCCceeecccC----------CcceeccccCCccccceeeeeh--
Confidence 123779999999999999999999999999985 3456667778888888887653
Q ss_pred ccccccccCCCCCCCccccccccCCCeEEEE---eCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCc
Q 000454 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1491)
Q Consensus 457 as~~s~~~~~~~~~~~~~~~~~~~~~~LaSg---S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (1491)
.++++ +.++.+.+||..-.. ....+
T Consensus 2304 --------------------------~~~tag~s~d~~n~~lwDtl~~~--------------------------~~s~v 2331 (2439)
T KOG1064|consen 2304 --------------------------LLATAGRSSDNRNVCLWDTLLPP--------------------------MNSLV 2331 (2439)
T ss_pred --------------------------hhhccccCCCCCcccchhcccCc--------------------------cccee
Confidence 34443 357889999865311 01111
Q ss_pred eeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
. ..|..+++++++-|..+.|++|+.+|.|+|||++..++++++.. ++ ...++++|+..|.|+||++.
T Consensus 2332 ~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2332 H--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred e--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh--hhheeeccCcccceEEEEcc
Confidence 1 67889999999999999999999999999999999888887764 32 35688899999999999998
Q ss_pred CCceEEEEee
Q 000454 614 EGIPIRIYEI 623 (1491)
Q Consensus 614 tGk~l~~l~~ 623 (1491)
....+.++..
T Consensus 2399 ~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2399 EFGLLHTFPS 2408 (2439)
T ss_pred ccchhhcCch
Confidence 8888877763
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.4e-07 Score=100.87 Aligned_cols=277 Identities=15% Similarity=0.140 Sum_probs=177.9
Q ss_pred CCeEEEEECCCCCcee--ee-ccCCCceEEEEecCC--CCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCC
Q 000454 306 DCIIRVWRLPDGLPIS--VL-RGHTAAVTAIAFSPR--PGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 306 DGtIrVWDl~tgk~i~--~L-~gHs~~VtsLaFSPd--g~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
-|.+.+|++...+.+. .+ ..-+..+..+.|+-. +.. ..|+-+...|.|.++..........+.
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~-~~l~~a~a~G~i~~~r~~~~~ss~~L~----------- 112 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGD-FNLLDAHARGQIQLYRNDEDESSVHLR----------- 112 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCcc-ceeeeccccceEEEEeeccceeeeeec-----------
Confidence 4678888887665443 11 223456777777643 222 367778888999998765433222221
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccc
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~ 460 (1491)
+.....-......++.|++.|..++++..+|.+.+-+.... ....+..++.|.-.+....|+-..
T Consensus 113 ---~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-------~le~vq~wk~He~E~Wta~f~~~~----- 177 (339)
T KOG0280|consen 113 ---GLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM-------VLEKVQTWKVHEFEAWTAKFSDKE----- 177 (339)
T ss_pred ---ccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee-------eeeecccccccceeeeeeecccCC-----
Confidence 00000111114678899999999999999999985554321 133445678888888887776432
Q ss_pred ccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC
Q 000454 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP 540 (1491)
Q Consensus 461 s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~ 540 (1491)
++.+.+|+.||.+..||++..+ ...| .....|.
T Consensus 178 --------------------pnlvytGgDD~~l~~~D~R~p~----~~i~-----------------------~n~kvH~ 210 (339)
T KOG0280|consen 178 --------------------PNLVYTGGDDGSLSCWDIRIPK----TFIW-----------------------HNSKVHT 210 (339)
T ss_pred --------------------CceEEecCCCceEEEEEecCCc----ceee-----------------------ecceeee
Confidence 4689999999999999998422 1111 1234577
Q ss_pred CCeeEEEEcC-CCCEEEEEeccceEEEEECCC-CceEEEEeCCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCc-
Q 000454 541 RGVNMIVWSL-DNRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPR-IAMSAGYDGKTIVWDIWEGI- 616 (1491)
Q Consensus 541 ~~VtsVafSP-DG~~LaSGs~DG~IrIWDl~t-gkll~tL~gHs~~VtsLafSPdd~~-lLaSgS~DGtIrIWDl~tGk- 616 (1491)
.+|.+|.-+| .+.+|++|+.|-.|++||.++ ++++..-. -.+.|+.+.++|.... +|+++-+. -.+|-++..+.
T Consensus 211 ~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 211 SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVL 288 (339)
T ss_pred cceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhc-CceEEEeccccc
Confidence 8898888776 577999999999999999984 66665433 3478999999996553 44444444 46777776542
Q ss_pred ----eEEEEeeCCcceEEEEEcCCCCEEEEEe-CCCcEE-EEECCCCc
Q 000454 617 ----PIRIYEISRFRLVDGKFSPDGASIILSD-DVGQLY-ILNTGQGE 658 (1491)
Q Consensus 617 ----~l~~l~~h~~~VtslafSPDG~~LAsgs-~DG~I~-IWdl~tG~ 658 (1491)
.+.....|..-++...|.....+||+++ .|..++ +|-..+++
T Consensus 289 e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 289 EFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred chheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 3344455555566666644445677753 466644 77766654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.6e-08 Score=126.60 Aligned_cols=192 Identities=15% Similarity=0.257 Sum_probs=154.1
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 000454 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317 (1491)
Q Consensus 239 L~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~-gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg 317 (1491)
++.|-..|.|+.-+|.-.+.+||+.||.|++|....+..+..++ +....|+.+.|+.+|+.+..+..||.+.+|.+. .
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 44566789999999999999999999999999999998888776 234889999999999999999999999999975 7
Q ss_pred CceeeeccCCCceEEEEecCCCCceEEEEEEe---CCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS---DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 318 k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS---~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
++....+.|......+.|... .+++++ .++.+.+||.--......+ ...|.+.
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~s-----~~~tag~s~d~~n~~lwDtl~~~~~s~v-------------------~~~H~~g 2338 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIGS-----LLATAGRSSDNRNVCLWDTLLPPMNSLV-------------------HTCHDGG 2338 (2439)
T ss_pred cceeccccCCccccceeeeeh-----hhhccccCCCCCcccchhcccCccccee-------------------eeecCCC
Confidence 778888899999999999873 566664 5688999996433221111 1458889
Q ss_pred eEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccc
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~ 474 (1491)
++++++-|...+|++|+.+|.|++||++.. +.+..+.. +.
T Consensus 2339 aT~l~~~P~~qllisggr~G~v~l~D~rqr---------ql~h~~~~---------~~---------------------- 2378 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGGRKGEVCLFDIRQR---------QLRHTFQA---------LD---------------------- 2378 (2439)
T ss_pred ceEEEEcCcceEEEecCCcCcEEEeehHHH---------HHHHHhhh---------hh----------------------
Confidence 999999999999999999999999999642 22222221 11
Q ss_pred cccccCCCeEEEEeCCCeEEEEecCC
Q 000454 475 KNSWFCHDNIVTCSRDGSAIIWIPRS 500 (1491)
Q Consensus 475 ~~~~~~~~~LaSgS~DGtIrIWDl~s 500 (1491)
...+|++|+..|.|+||++..
T Consensus 2379 -----~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2379 -----TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred -----hhheeeccCcccceEEEEccc
Confidence 135899999999999999885
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.2e-06 Score=99.43 Aligned_cols=309 Identities=13% Similarity=0.067 Sum_probs=181.5
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCC-C---------Ce-EEEEEcCCCCEEEEEECCCeEEEEECCCCCceeee
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHE-G---------DI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1491)
Q Consensus 255 G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~-~---------~V-tsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L 323 (1491)
+..|++++.+|.|.-+|..+|+.+....-.. . .+ ..++. ++..|+.++.+|.|..+|..+|+.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 5577777788899999999998887654221 0 00 01111 3556777888999999999999998877
Q ss_pred ccCCCceEE-EEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC
Q 000454 324 RGHTAAVTA-IAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA 402 (1491)
Q Consensus 324 ~gHs~~Vts-LaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP 402 (1491)
.... .+.+ .... ++ .++.+..+|.|..+|..+|+.+.......+... ......++ .
T Consensus 147 ~~~~-~~~ssP~v~-~~----~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~-----------~~~~~sP~----v-- 203 (394)
T PRK11138 147 KVAG-EALSRPVVS-DG----LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT-----------LRGESAPA----T-- 203 (394)
T ss_pred cCCC-ceecCCEEE-CC----EEEEECCCCEEEEEEccCCCEeeeecCCCCccc-----------ccCCCCCE----E--
Confidence 6432 2222 1222 22 577788899999999999987766643211000 00001111 1
Q ss_pred CCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecC-CC-CCceEEEEccCccccccccccCCCCCCCccccccccC
Q 000454 403 NGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG-HE-NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480 (1491)
Q Consensus 403 DG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~g-H~-~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~ 480 (1491)
.+..++.++.+|.+..+|..+++..-... +....+ +. .....+..+| ...
T Consensus 204 ~~~~v~~~~~~g~v~a~d~~~G~~~W~~~----~~~~~~~~~~~~~~~~~~sP------------------------~v~ 255 (394)
T PRK11138 204 AFGGAIVGGDNGRVSAVLMEQGQLIWQQR----ISQPTGATEIDRLVDVDTTP------------------------VVV 255 (394)
T ss_pred ECCEEEEEcCCCEEEEEEccCChhhheec----cccCCCccchhcccccCCCc------------------------EEE
Confidence 12346667778888888886643210000 000000 00 0000000011 111
Q ss_pred CCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEec
Q 000454 481 HDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM 560 (1491)
Q Consensus 481 ~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~ 560 (1491)
++.++.++.+|.+..+|+.+++. .|...+. . ...++ ..+..|++++.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~-----~W~~~~~-----------------------~---~~~~~--~~~~~vy~~~~ 302 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQI-----VWKREYG-----------------------S---VNDFA--VDGGRIYLVDQ 302 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCE-----EEeecCC-----------------------C---ccCcE--EECCEEEEEcC
Confidence 35677788899999999987652 2322110 0 00111 24567777888
Q ss_pred cceEEEEECCCCceEEEEeCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEE-EEEcCCCC
Q 000454 561 DCRICVWNAADGSLVHSLTGHTE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVD-GKFSPDGA 638 (1491)
Q Consensus 561 DG~IrIWDl~tgkll~tL~gHs~-~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~Vts-lafSPDG~ 638 (1491)
+|.|+.+|..+|+.+.....-.. ......+. ++ .|+.++.||.|.+.|..+|+.+..+......+.. ..+ .+.
T Consensus 303 ~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~ 377 (394)
T PRK11138 303 NDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NG-YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADD 377 (394)
T ss_pred CCeEEEEECCCCcEEEcccccCCCcccCCEEE--CC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECC
Confidence 99999999999987664432111 12222222 33 4556889999999999999999888754333332 122 345
Q ss_pred EEEEEeCCCcEEEEEC
Q 000454 639 SIILSDDVGQLYILNT 654 (1491)
Q Consensus 639 ~LAsgs~DG~I~IWdl 654 (1491)
.|++++.+|.|+.++.
T Consensus 378 ~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 378 KLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEeCCceEEEEeC
Confidence 7888999999998874
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.9e-06 Score=112.84 Aligned_cols=116 Identities=14% Similarity=0.076 Sum_probs=82.4
Q ss_pred eeEEEEcCCCCEEE-EEeccceEEEEECCCCceEEEEeC-------------C--------CCCeEEEEEecCCCcEEEE
Q 000454 543 VNMIVWSLDNRFVL-AAIMDCRICVWNAADGSLVHSLTG-------------H--------TESTYVLDVHPFNPRIAMS 600 (1491)
Q Consensus 543 VtsVafSPDG~~La-SGs~DG~IrIWDl~tgkll~tL~g-------------H--------s~~VtsLafSPdd~~lLaS 600 (1491)
...|+|+|+|.+|+ +-..++.|++||+.++.......+ + -.....|+|++ ++.++++
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVA 820 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVA 820 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEE
Confidence 56689999988554 445668899999887653211100 0 01235788998 5567778
Q ss_pred EeCCCcEEEEeCCCCceEEEEeeC-------------CcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 000454 601 AGYDGKTIVWDIWEGIPIRIYEIS-------------RFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659 (1491)
Q Consensus 601 gS~DGtIrIWDl~tGk~l~~l~~h-------------~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~ 659 (1491)
-..++.|++||..++........+ -.....|+++++|+++++-+.++.|++|++.+++.
T Consensus 821 Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 888999999999887665433211 11456899999999888888899999999988754
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=114.74 Aligned_cols=233 Identities=23% Similarity=0.356 Sum_probs=159.4
Q ss_pred CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC--
Q 000454 327 TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG-- 404 (1491)
Q Consensus 327 s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG-- 404 (1491)
.+.+.++..+|.+. -++.++.-| +.+.|+...-...+... ......|-.+.|+|..
T Consensus 24 ~~~~~a~si~p~gr---di~lAsr~g-l~i~dld~p~~ppr~l~------------------h~tpw~vad~qws~h~a~ 81 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGR---DIVLASRQG-LYIIDLDDPFTPPRWLH------------------HITPWQVADVQWSPHPAK 81 (1081)
T ss_pred cCcccceeeccccc---hhhhhhhcC-eEEEeccCCCCCceeee------------------ccCcchhcceecccCCCC
Confidence 45678889999887 567777666 56667654432222211 1123345566676643
Q ss_pred CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeE
Q 000454 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1491)
Q Consensus 405 ~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~L 484 (1491)
.+-++........+|++.... ....-..+-+|...|+.+.|.|.. ++.+
T Consensus 82 ~~wiVsts~qkaiiwnlA~ss------~~aIef~lhghsraitd~n~~~q~-------------------------pdVl 130 (1081)
T KOG0309|consen 82 PYWIVSTSNQKAIIWNLAKSS------SNAIEFVLHGHSRAITDINFNPQH-------------------------PDVL 130 (1081)
T ss_pred ceeEEecCcchhhhhhhhcCC------ccceEEEEecCccceeccccCCCC-------------------------Ccce
Confidence 234444445555689886532 233445678999999999999864 5789
Q ss_pred EEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceE
Q 000454 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRI 564 (1491)
Q Consensus 485 aSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~I 564 (1491)
++++.|-.+..||+++... +......-......|+|+.....+.+.+....|
T Consensus 131 atcsvdt~vh~wd~rSp~~----------------------------p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 131 ATCSVDTYVHAWDMRSPHR----------------------------PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred eeccccccceeeeccCCCc----------------------------ceeeeecccccCceeeecccCcchhhhccCCce
Confidence 9999999999999997431 111112222345668898876677777788889
Q ss_pred EEEECCCC-ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE-EEEeeCCcceEEEEEcCCCCEE
Q 000454 565 CVWNAADG-SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI-RIYEISRFRLVDGKFSPDGASI 640 (1491)
Q Consensus 565 rIWDl~tg-kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l-~~l~~h~~~VtslafSPDG~~L 640 (1491)
.|||.+.| .++..+++|...|+.++|...-...+++++.||+|++||....... ........+|+...|-|-|.-.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence 99999765 6788999999999999998766677889999999999998754322 2222356688888888866533
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.3e-06 Score=95.92 Aligned_cols=271 Identities=16% Similarity=0.129 Sum_probs=175.0
Q ss_pred CCCeEEEEECCCCeEEE--EE-ecCCCCeEEEEEcC---CCC-EEEEEECCCeEEEEECCCCCceeeeccCC------Cc
Q 000454 263 DDRLVKIWSMETAYCLA--SC-RGHEGDITDLAVSS---NNA-LVASASNDCIIRVWRLPDGLPISVLRGHT------AA 329 (1491)
Q Consensus 263 ~DGtIrIWDl~Tg~~l~--tL-~gH~~~VtsLafSP---DG~-lLASGS~DGtIrVWDl~tgk~i~~L~gHs------~~ 329 (1491)
.-|.+.++++...+... ++ ......+..|.|.- +|. .|+-+...|.|.++..........|.+-. ..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 34678899887665543 11 22345677777764 455 56667778999999865444333333221 12
Q ss_pred eEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC-CCCEEE
Q 000454 330 VTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA-NGTVFV 408 (1491)
Q Consensus 330 VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP-DG~~La 408 (1491)
..++.|++.+. .++++..+|.+.+-+........ ......|...++.+.|+- +.+++.
T Consensus 124 ~lslD~~~~~~---~i~vs~s~G~~~~v~~t~~~le~------------------vq~wk~He~E~Wta~f~~~~pnlvy 182 (339)
T KOG0280|consen 124 ALSLDISTSGT---KIFVSDSRGSISGVYETEMVLEK------------------VQTWKVHEFEAWTAKFSDKEPNLVY 182 (339)
T ss_pred eeEEEeeccCc---eEEEEcCCCcEEEEecceeeeee------------------cccccccceeeeeeecccCCCceEE
Confidence 45778888877 78899899998855544332211 123356888889999976 447899
Q ss_pred EecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEe
Q 000454 409 TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 488 (1491)
Q Consensus 409 sGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS 488 (1491)
+|+.|+.+..||++.++ ........-|...|.+|.-+|.- +.++++|+
T Consensus 183 tGgDD~~l~~~D~R~p~-------~~i~~n~kvH~~GV~SI~ss~~~-------------------------~~~I~TGs 230 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPK-------TFIWHNSKVHTSGVVSIYSSPPK-------------------------PTYIATGS 230 (339)
T ss_pred ecCCCceEEEEEecCCc-------ceeeecceeeecceEEEecCCCC-------------------------CceEEEec
Confidence 99999999999998432 12233356788899999887642 46899999
Q ss_pred CCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC-EEEEEeccceEEEE
Q 000454 489 RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR-FVLAAIMDCRICVW 567 (1491)
Q Consensus 489 ~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~-~LaSGs~DG~IrIW 567 (1491)
.|-.|++||.++-. .++.. ....++|..+.++|.-. .|+.+++-.-.+|.
T Consensus 231 YDe~i~~~DtRnm~----------------------------kPl~~-~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~ 281 (339)
T KOG0280|consen 231 YDECIRVLDTRNMG----------------------------KPLFK-AKVGGGVWRIKHHPEIFHRLLAACMHNGAKIL 281 (339)
T ss_pred cccceeeeehhccc----------------------------Ccccc-CccccceEEEEecchhhhHHHHHHHhcCceEE
Confidence 99999999998521 01100 11237899999998533 23344455556777
Q ss_pred ECCCCc-----eEEEEeCCCCCeEEEEEecCCCcEEEEEe-CCCcEE-EEeCCCCc
Q 000454 568 NAADGS-----LVHSLTGHTESTYVLDVHPFNPRIAMSAG-YDGKTI-VWDIWEGI 616 (1491)
Q Consensus 568 Dl~tgk-----ll~tL~gHs~~VtsLafSPdd~~lLaSgS-~DGtIr-IWDl~tGk 616 (1491)
+...+. .....+.|.+-++.-.|.. -..+|+||+ +|..|+ +|-.-++.
T Consensus 282 ~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~-~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 282 DSSDKVLEFQIVLPSDKIHDSLCYGGDWDS-KDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred Eecccccchheeeeccccccceeecccccc-ccceeeeeeccccceeeeeeeccCC
Confidence 765532 2344567777777777744 235677765 677755 77654543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.9e-08 Score=120.91 Aligned_cols=201 Identities=18% Similarity=0.284 Sum_probs=139.1
Q ss_pred CCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccC
Q 000454 386 SSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465 (1491)
Q Consensus 386 ~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~ 465 (1491)
.....+....+|++|+.+.++|++|+..|.|++|++.++ ........|...|+.|.-+.+|.
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG---------~~e~s~ncH~SavT~vePs~dgs--------- 1156 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG---------SMEESVNCHQSAVTLVEPSVDGS--------- 1156 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc---------cccccccccccccccccccCCcc---------
Confidence 344567788999999999999999999999999999874 34556678999999998887761
Q ss_pred CCCCCCccccccccCCCeEEEEeCCC-eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCee
Q 000454 466 SKEDSTPKFKNSWFCHDNIVTCSRDG-SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVN 544 (1491)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~LaSgS~DG-tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~Vt 544 (1491)
.+|.+.+... -..+|++.+. +++...+ ..-.
T Consensus 1157 ----------------~~Ltsss~S~PlsaLW~~~s~----------------------------~~~~Hsf----~ed~ 1188 (1516)
T KOG1832|consen 1157 ----------------TQLTSSSSSSPLSALWDASST----------------------------GGPRHSF----DEDK 1188 (1516)
T ss_pred ----------------eeeeeccccCchHHHhccccc----------------------------cCccccc----cccc
Confidence 1333333332 4567876641 1111111 2235
Q ss_pred EEEEcCCCCEEEEEeccceEEEEECCCCceEEEE-eC---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE
Q 000454 545 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TG---HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRI 620 (1491)
Q Consensus 545 sVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL-~g---Hs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~ 620 (1491)
++.|+..-.+-+.|+......|||+.++..+.++ .+ ..-.-+++.|+|.+..+| .|| .+||+...+.++.
T Consensus 1189 ~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl----ndG--vLWDvR~~~aIh~ 1262 (1516)
T KOG1832|consen 1189 AVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL----NDG--VLWDVRIPEAIHR 1262 (1516)
T ss_pred eeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe----eCc--eeeeeccHHHHhh
Confidence 6778776666666766678999999999887763 22 122236788999554444 465 5799998888887
Q ss_pred EeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCccccccc
Q 000454 621 YEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAK 664 (1491)
Q Consensus 621 l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~ 664 (1491)
|..... -..-.|+|.|.-++.-+. |||+.+-+.+...+
T Consensus 1263 FD~ft~-~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1263 FDQFTD-YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVP 1300 (1516)
T ss_pred hhhhee-cccccccCCCceEEeech-----hhhhHHHHHHhcCc
Confidence 764431 224579999999998775 89998887766554
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-05 Score=109.01 Aligned_cols=275 Identities=12% Similarity=0.076 Sum_probs=158.5
Q ss_pred EEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEEec--C------------CCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q 000454 248 CAIFDRS-GRYVITGSDDRLVKIWSMETAYCLASCRG--H------------EGDITDLAVSSNNALVASAS-NDCIIRV 311 (1491)
Q Consensus 248 ~VaFSpD-G~~LATGS~DGtIrIWDl~Tg~~l~tL~g--H------------~~~VtsLafSPDG~lLASGS-~DGtIrV 311 (1491)
.++++++ |.++++-+..+.|.+||.. |..+..+.+ . -.....|+|.++++.|+.+. ..+.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5888874 6677777888999999986 554444432 1 12357899999888665554 4578999
Q ss_pred EECCCCCceeeeccC-----------------CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCC
Q 000454 312 WRLPDGLPISVLRGH-----------------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPS 374 (1491)
Q Consensus 312 WDl~tgk~i~~L~gH-----------------s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~ 374 (1491)
+|+.++. +.++.+- -..-+.|+|+|++. .++++...++.|++||..++... .+.-....
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g--~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE--KVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC--eEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 9987654 3333210 11236799999544 26677778899999998876532 11100000
Q ss_pred CcccCCCCCCCCCCCCCCcceEEEEECCCCC-EEEEecCCceEEEEeCCCCCCCCC--CCC--CceeeeecCC-------
Q 000454 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDS--DQP--NHEIDVLSGH------- 442 (1491)
Q Consensus 375 ~~~~g~~~~~~~s~~~h~~~V~slafSPDG~-~LasGs~DG~IrVWDl~t~~~~~s--~~~--~~~i~~l~gH------- 442 (1491)
....+ .............|+|+|+|. ++++-+.++.|++||+.++..... ..+ ......+..+
T Consensus 727 ~~~~g-----~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 727 RNLNG-----SSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred ccCCC-----CccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 00000 000011224567899999998 455566679999999875321000 000 0000000000
Q ss_pred -CCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCC
Q 000454 443 -ENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1491)
Q Consensus 443 -~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~ 521 (1491)
-..-..++++++ +..+++-+.++.|++||..++........
T Consensus 802 ~l~~P~Gvavd~d--------------------------G~LYVADs~N~rIrviD~~tg~v~tiaG~------------ 843 (1057)
T PLN02919 802 LLQHPLGVLCAKD--------------------------GQIYVADSYNHKIKKLDPATKRVTTLAGT------------ 843 (1057)
T ss_pred hccCCceeeEeCC--------------------------CcEEEEECCCCEEEEEECCCCeEEEEecc------------
Confidence 001124444443 35788888899999999886432111000
Q ss_pred CCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCce
Q 000454 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 574 (1491)
Q Consensus 522 ~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkl 574 (1491)
.... ...+. .....-.....|+++++|+++++-+.++.|++||+.+++.
T Consensus 844 G~~G-~~dG~---~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 844 GKAG-FKDGK---ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCcC-CCCCc---ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 0000 00000 0112223567899999999988888999999999998865
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-05 Score=98.82 Aligned_cols=201 Identities=9% Similarity=0.024 Sum_probs=121.7
Q ss_pred CeeEEEEcCCCCE-EEEEec---cceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEeCCCC
Q 000454 542 GVNMIVWSLDNRF-VLAAIM---DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYD--GKTIVWDIWEG 615 (1491)
Q Consensus 542 ~VtsVafSPDG~~-LaSGs~---DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~D--GtIrIWDl~tG 615 (1491)
.+....|+|||+. ++..+. ...|+++|+.+++...... ..+.+....|+|++.+++++.+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5667899999985 554443 3569999998887655443 455566788999777777776655 46778888777
Q ss_pred ceEEEEeeCCcceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCcccccc---cceeeecCCCcceEEccCCCEEEcc-
Q 000454 616 IPIRIYEISRFRLVDGKFSPDGASIILSDD-VG--QLYILNTGQGESQKDA---KYDQFFLGDYRPLVQDTYGNVLDQE- 688 (1491)
Q Consensus 616 k~l~~l~~h~~~VtslafSPDG~~LAsgs~-DG--~I~IWdl~tG~~~~~~---~~~~~fs~D~r~La~d~~G~vLde~- 688 (1491)
.... +..+........|+|||+.|+..+. .| .|+++++.+|+..+.. .+...|+||++.|++.....--+..
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~ 346 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFGK 346 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccCC
Confidence 6443 4333333445689999998887654 23 7889999887752221 1234789999998765432100000
Q ss_pred ccccCccccCCCccccccCCCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCcEEeccCCCc
Q 000454 689 TQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADL 757 (1491)
Q Consensus 689 tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~v~lw~~~~~ 757 (1491)
.....+++++.++.. +.+.... ......|||||++|+..........+.+.++...
T Consensus 347 ~~~~I~v~d~~~g~~-----------~~LT~~~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 347 NTFNLYLISTNSDYI-----------RRLTANG--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCcEEEEEECCCCCe-----------EECCCCC--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 001123344332221 1111111 1234889999999988743333334666666443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.1e-05 Score=88.02 Aligned_cols=277 Identities=13% Similarity=0.061 Sum_probs=167.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEECCC--CeEEEE--EecCCCCeEEEEEcCCCCEEEEEEC-CCeEEEE
Q 000454 241 GHRNAVYCAIFDRSGRYVITGSD---DRLVKIWSMET--AYCLAS--CRGHEGDITDLAVSSNNALVASASN-DCIIRVW 312 (1491)
Q Consensus 241 GH~~~Vt~VaFSpDG~~LATGS~---DGtIrIWDl~T--g~~l~t--L~gH~~~VtsLafSPDG~lLASGS~-DGtIrVW 312 (1491)
.+.+..+-|+|+|++++|.++.. +|.|-.|.+.. |++... ......+-+.++++++|++|+++.. -|.|.|+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 46678899999999999988854 47787777764 554332 2222334489999999999999876 4889999
Q ss_pred ECCC-CCcee--eeccCCCc----------eEEEEecCCCCceEEEEEEeC-CCcEEEEccCCCCccceeecCCCCCccc
Q 000454 313 RLPD-GLPIS--VLRGHTAA----------VTAIAFSPRPGSVYQLLSSSD-DGTCRIWDARYSQFSPRIYIPRPSDAVA 378 (1491)
Q Consensus 313 Dl~t-gk~i~--~L~gHs~~----------VtsLaFSPdg~s~~~LaSgS~-DGtVrIWDl~tg~~~~~i~~~~~~~~~~ 378 (1491)
-++. |.+.. .+..|.+. +....|.|+++ +|++..- --.|.+|++..+.+......
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~---~l~v~DLG~Dri~~y~~~dg~L~~~~~~-------- 185 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR---YLVVPDLGTDRIFLYDLDDGKLTPADPA-------- 185 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC---EEEEeecCCceEEEEEcccCcccccccc--------
Confidence 9865 43322 12235555 89999999997 6665542 23589999987765443211
Q ss_pred CCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-CceEEEEeCCCCCCCCCCCCCceeeeec---CCCCCceEEEEccC
Q 000454 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLS---GHENDVNYVQFSGC 454 (1491)
Q Consensus 379 g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-DG~IrVWDl~t~~~~~s~~~~~~i~~l~---gH~~~V~sVafSpd 454 (1491)
....+.....|+|+|+|++..+.+. +++|-+|...... ......+.+..+. .-.....+|.++++
T Consensus 186 ---------~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~--g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 186 ---------EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV--GKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ---------ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC--ceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 1124556789999999998876654 8999999986531 0001111111111 11335567777777
Q ss_pred ccccccccccCCCCCCCccccccccCCCeEEEEeCC--CeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 000454 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD--GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532 (1491)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~D--GtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 532 (1491)
| .++-+|.- ..|.+|.+...... . ..
T Consensus 255 G---------------------------rFLYasNRg~dsI~~f~V~~~~g~--L-----------------------~~ 282 (346)
T COG2706 255 G---------------------------RFLYASNRGHDSIAVFSVDPDGGK--L-----------------------EL 282 (346)
T ss_pred C---------------------------CEEEEecCCCCeEEEEEEcCCCCE--E-----------------------EE
Confidence 6 33333332 34555544421100 0 00
Q ss_pred ceeccCCCCCeeEEEEcCCCCEEEEEeccc-eEEEEEC--CCCceEEEEe-CCCCCeEEEEEe
Q 000454 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNA--ADGSLVHSLT-GHTESTYVLDVH 591 (1491)
Q Consensus 533 ~~~l~~h~~~VtsVafSPDG~~LaSGs~DG-~IrIWDl--~tgkll~tL~-gHs~~VtsLafS 591 (1491)
......+......+.|++.|++|+++..++ .|.||.+ .+|++-.... .......||.|.
T Consensus 283 ~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 283 VGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 111122233357788999999999988654 5777765 4565544332 233334555553
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00017 Score=83.77 Aligned_cols=270 Identities=11% Similarity=0.127 Sum_probs=163.5
Q ss_pred CCeEEEEECCCC--Cc-eeeeccCCCceEEEEecCCCCceEEEEEEeC---CCcEEEEccCC--CCccceeecCCCCCcc
Q 000454 306 DCIIRVWRLPDG--LP-ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARY--SQFSPRIYIPRPSDAV 377 (1491)
Q Consensus 306 DGtIrVWDl~tg--k~-i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~---DGtVrIWDl~t--g~~~~~i~~~~~~~~~ 377 (1491)
+.-|.+|++.+. +. ...+-.+.+.++-|+|+|+.+ .|.++-. +|.|..|.++. |.+...-..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~---~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~------- 84 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQR---HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ------- 84 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCC---EEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-------
Confidence 456999998732 21 122234677889999999987 5666543 57787776664 443211100
Q ss_pred cCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec-CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCC----------c
Q 000454 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVLSGHEND----------V 446 (1491)
Q Consensus 378 ~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs-~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~----------V 446 (1491)
.......+.++++++|++++++. ..|.|.++-+..... .........|.+. +
T Consensus 85 -----------~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~------l~~~v~~~~h~g~~p~~rQ~~~h~ 147 (346)
T COG2706 85 -----------TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGS------LQPVVQVVKHTGSGPHERQESPHV 147 (346)
T ss_pred -----------ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCc------cccceeeeecCCCCCCccccCCcc
Confidence 01222338899999999888775 468899998854211 1112222233333 6
Q ss_pred eEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEe-CCCeEEEEecCCCCCCccccccccccccCCCCCCCCC
Q 000454 447 NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS-RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525 (1491)
Q Consensus 447 ~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS-~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~ 525 (1491)
....+.|++ ++|+++. .--.|.+|++..++....
T Consensus 148 H~a~~tP~~--------------------------~~l~v~DLG~Dri~~y~~~dg~L~~~------------------- 182 (346)
T COG2706 148 HSANFTPDG--------------------------RYLVVPDLGTDRIFLYDLDDGKLTPA------------------- 182 (346)
T ss_pred ceeeeCCCC--------------------------CEEEEeecCCceEEEEEcccCccccc-------------------
Confidence 667777764 4555543 234688888885442110
Q ss_pred CCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe-ccceEEEEECCCC-ceEEEEeC---------CCCCeEEEEEecCC
Q 000454 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADG-SLVHSLTG---------HTESTYVLDVHPFN 594 (1491)
Q Consensus 526 ~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs-~DG~IrIWDl~tg-kll~tL~g---------Hs~~VtsLafSPdd 594 (1491)
.........+...|+|+|+|++..+.+ -+++|.+|..... ..+..++. -.....+|.++| +
T Consensus 183 -------~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-d 254 (346)
T COG2706 183 -------DPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-D 254 (346)
T ss_pred -------cccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-C
Confidence 001113445678899999999987765 5889999998763 22222221 123456788899 6
Q ss_pred CcEEEEEe-CCCcEEEEeCCCC-ceEEEEe---eCCcceEEEEEcCCCCEEEEEeCC-CcEEEEECC
Q 000454 595 PRIAMSAG-YDGKTIVWDIWEG-IPIRIYE---ISRFRLVDGKFSPDGASIILSDDV-GQLYILNTG 655 (1491)
Q Consensus 595 ~~lLaSgS-~DGtIrIWDl~tG-k~l~~l~---~h~~~VtslafSPDG~~LAsgs~D-G~I~IWdl~ 655 (1491)
+++|.++. ....|.+|.+... ..+..+. .+...-.++.|+|+|++|+++..+ ..|.+|...
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 67776553 2347888877542 2233222 222235688999999999988664 467888763
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.5e-06 Score=95.69 Aligned_cols=281 Identities=13% Similarity=0.228 Sum_probs=168.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-----CceeeeccCC------------CceEEEEecCCCCceEEEE
Q 000454 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDG-----LPISVLRGHT------------AAVTAIAFSPRPGSVYQLL 346 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg-----k~i~~L~gHs------------~~VtsLaFSPdg~s~~~La 346 (1491)
....|+++.|...|.||++|...|.|.++.-... +....+++|. ..|..|.|..+++. ..++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r-~hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR-NHFL 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc-ceEE
Confidence 3467999999999999999999999999975432 2233455554 35788999877643 3677
Q ss_pred EEeCCCcEEEEccCCCCccc--------eeecCCCCCccc------CC--------CCCC-CCCCCCCCcceEEEEECCC
Q 000454 347 SSSDDGTCRIWDARYSQFSP--------RIYIPRPSDAVA------GR--------NMAP-SSSAGPQSHQIFCCAFNAN 403 (1491)
Q Consensus 347 SgS~DGtVrIWDl~tg~~~~--------~i~~~~~~~~~~------g~--------~~~~-~~s~~~h~~~V~slafSPD 403 (1491)
..+.|.+|++|.+....... .+..+....... ++ ...+ ......|...|.+++|+.|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 77889999999986542111 010000000000 00 0000 1122457778999999999
Q ss_pred CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCC-----CCceEEEEccCccccccccccCCCCCCCccccccc
Q 000454 404 GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE-----NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 404 G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~-----~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
...++++. |=.|.+|++..... ...+..+..|. .-|++..|+|..
T Consensus 184 ~et~lSaD-dLrINLWnl~i~D~------sFnIVDiKP~nmeeLteVItSaeFhp~~----------------------- 233 (460)
T COG5170 184 KETLLSAD-DLRINLWNLEIIDG------SFNIVDIKPHNMEELTEVITSAEFHPEM----------------------- 233 (460)
T ss_pred hheeeecc-ceeeeeccccccCC------ceEEEeccCccHHHHHHHHhhcccCHhH-----------------------
Confidence 88887664 77899999864211 11222233332 245666666653
Q ss_pred cCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEE
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1491)
Q Consensus 479 ~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSG 558 (1491)
...|.-.+..|.|++-|++........ ...+.+ ...+....-+..-...|..+.|+++|++|++-
T Consensus 234 --cn~fmYSsSkG~Ikl~DlRq~alcdn~---~klfe~----------~~D~v~~~ff~eivsSISD~kFs~ngryIlsR 298 (460)
T COG5170 234 --CNVFMYSSSKGEIKLNDLRQSALCDNS---KKLFEL----------TIDGVDVDFFEEIVSSISDFKFSDNGRYILSR 298 (460)
T ss_pred --cceEEEecCCCcEEehhhhhhhhccCc---hhhhhh----------ccCcccchhHHHHhhhhcceEEcCCCcEEEEe
Confidence 346778889999999999842210000 000000 00001111122234568889999999999987
Q ss_pred eccceEEEEECCC-CceEEEEeCCC------------CCe---EEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 559 IMDCRICVWNAAD-GSLVHSLTGHT------------EST---YVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 559 s~DG~IrIWDl~t-gkll~tL~gHs------------~~V---tsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
.. -+|+|||... ..++.++.-|. ..| ..+.|+. +...+++|+.....-||-+
T Consensus 299 dy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 299 DY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred cc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecC-Ccccccccccccceeeecc
Confidence 54 4899999875 45677765443 223 3466776 4455668887777666654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.5e-07 Score=105.63 Aligned_cols=290 Identities=15% Similarity=0.221 Sum_probs=182.2
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-------CCceeeeccCCCceEEEEecCCCCceEEEEEEeC
Q 000454 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD-------GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350 (1491)
Q Consensus 278 l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~t-------gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~ 350 (1491)
+..+.||...|..++--.+.+-+++++.|.+|++|.++. ..+..+++.|..+|.++.|..+.+ +++ +.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr---~i~--Sc 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR---SIA--SC 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc---eee--ec
Confidence 456779999999998877888899999999999999853 246678889999999999999865 444 45
Q ss_pred CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEe-cCCceEEEEeCCCCCCCCC
Q 000454 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG-SSDTLARVWNACKPNTDDS 429 (1491)
Q Consensus 351 DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasG-s~DG~IrVWDl~t~~~~~s 429 (1491)
||.|.+||.--+..+....- ....+..+.|.|+-- -+..++++| +...+|+++|.+.....
T Consensus 803 D~giHlWDPFigr~Laq~~d---------------apk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~-- 864 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMED---------------APKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWT-- 864 (1034)
T ss_pred cCcceeecccccchhHhhhc---------------CcccCCCceeEeccc-Ccchheeeeccchhhheeeecccccce--
Confidence 78899999876665543311 001112233444422 234445554 67889999998764321
Q ss_pred CCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccc
Q 000454 430 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509 (1491)
Q Consensus 430 ~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~ 509 (1491)
....+....+....+.+++..+.| +.++.+-..|+|.+.|.++++.+ ..
T Consensus 865 --~E~kVcna~~Pna~~R~iaVa~~G--------------------------N~lAa~LSnGci~~LDaR~G~vI---Ns 913 (1034)
T KOG4190|consen 865 --CELKVCNAPGPNALTRAIAVADKG--------------------------NKLAAALSNGCIAILDARNGKVI---NS 913 (1034)
T ss_pred --eeEEeccCCCCchheeEEEeccCc--------------------------chhhHHhcCCcEEEEecCCCcee---cc
Confidence 011222234556678888888775 68999999999999999986522 22
Q ss_pred cccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEE-EECCCCceEEEEeCCCCCeEEE
Q 000454 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICV-WNAADGSLVHSLTGHTESTYVL 588 (1491)
Q Consensus 510 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrI-WDl~tgkll~tL~gHs~~VtsL 588 (1491)
|... ......++ .|..+.|+....|.++.| |-...|....+.+....+..-+
T Consensus 914 wrpm--------------------------ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl 966 (1034)
T KOG4190|consen 914 WRPM--------------------------ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL 966 (1034)
T ss_pred CCcc--------------------------cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh
Confidence 3211 01111121 245566777777888888 8877776655554433332111
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCC-C---ceEEEEe--eCCcceEEEEEcCCCCEEEEEeCCCcEEE
Q 000454 589 DVHPFNPRIAMSAGYDGKTIVWDIWE-G---IPIRIYE--ISRFRLVDGKFSPDGASIILSDDVGQLYI 651 (1491)
Q Consensus 589 afSPdd~~lLaSgS~DGtIrIWDl~t-G---k~l~~l~--~h~~~VtslafSPDG~~LAsgs~DG~I~I 651 (1491)
. .-++ -|+++.....+.||--.. . ..+..+. ...+..++++.-|-+.-+.+|...|.|.+
T Consensus 967 q--svgp-SLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 967 Q--SVGP-SLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred h--ccCc-eeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 1 0122 344666666677774211 1 1111111 23456778888888888888888898875
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.2e-07 Score=113.20 Aligned_cols=166 Identities=14% Similarity=0.215 Sum_probs=125.0
Q ss_pred cccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC--
Q 000454 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDC-- 307 (1491)
Q Consensus 230 v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DG-- 307 (1491)
...++..++|+.|+...+|++|+.+.+.|+.|+..|.|+++++.+|.......+|..+|+.|.-+-||.++++.+.-.
T Consensus 1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 356788899999999999999999999999999999999999999999999999999999999999999777765433
Q ss_pred eEEEEECCC-CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 308 IIRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 308 tIrVWDl~t-gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
-..+|++.. +.+.+.|.+ -.++.|+.... .-+.|..-..+.|||+.++....++..+.
T Consensus 1168 lsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q---~r~~gt~~d~a~~YDvqT~~~l~tylt~~-------------- 1226 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDE----DKAVKFSNSLQ---FRALGTEADDALLYDVQTCSPLQTYLTDT-------------- 1226 (1516)
T ss_pred hHHHhccccccCccccccc----cceeehhhhHH---HHHhcccccceEEEecccCcHHHHhcCcc--------------
Confidence 478999854 455555553 35678887643 22334434568999999998777653211
Q ss_pred CCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCC
Q 000454 387 SAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1491)
Q Consensus 387 s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t 423 (1491)
......-.+..|+|+..+|+- || .+||++.
T Consensus 1227 --~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1227 --VTSSYSNNLAHFSPCDTLILN---DG--VLWDVRI 1256 (1516)
T ss_pred --hhhhhhccccccCCCcceEee---Cc--eeeeecc
Confidence 111222367889998887763 44 3788865
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3e-06 Score=95.02 Aligned_cols=237 Identities=17% Similarity=0.237 Sum_probs=149.1
Q ss_pred CCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCC------------CceEEEEccCcccc
Q 000454 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHEN------------DVNYVQFSGCAVAS 458 (1491)
Q Consensus 391 h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~------------~V~sVafSpdg~as 458 (1491)
....|+++.|...|.+|++|...|.|.+|.-.... .-..+.+..+.+|.. .|..|.|..++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~----~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t--- 97 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSY----GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT--- 97 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeeccccc----ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC---
Confidence 34568999999999999999999999999765321 001223334555542 35555555432
Q ss_pred ccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcc-ccccccccccCCCCCCCCC------CC----
Q 000454 459 RFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPK-AARWTQAYHLKVPPPPMPP------QP---- 527 (1491)
Q Consensus 459 ~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~-~~~~~~~~~l~~~~~~~~~------~~---- 527 (1491)
....++..+.|.+|++|.+........ .......++..+..+.... ..
T Consensus 98 ---------------------~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd 156 (460)
T COG5170 98 ---------------------GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHD 156 (460)
T ss_pred ---------------------CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccc
Confidence 124688889999999998876432111 0111111111111100000 00
Q ss_pred --CCCCCcee-ccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCce---EEEEeCCC-----CCeEEEEEecCCCc
Q 000454 528 --PRGGPRQR-ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL---VHSLTGHT-----ESTYVLDVHPFNPR 596 (1491)
Q Consensus 528 --~~~~~~~~-l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkl---l~tL~gHs-----~~VtsLafSPdd~~ 596 (1491)
....+... ...|...|+++.|..|...++++ .|-.|-+|++.-... +..++.|. ..|++..|||..-.
T Consensus 157 ~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn 235 (460)
T COG5170 157 EIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCN 235 (460)
T ss_pred eEEEeccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcc
Confidence 00111111 24577789999999999888876 577899999864322 22334443 36889999997777
Q ss_pred EEEEEeCCCcEEEEeCCCCceE----EE------------EeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 597 IAMSAGYDGKTIVWDIWEGIPI----RI------------YEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 597 lLaSgS~DGtIrIWDl~tGk~l----~~------------l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
++.-.+..|.|++-|++...+. .. +..-...|.++.|++.|++|++-+. -+|.|||+...
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 7777888999999999743211 01 1112236788999999999998877 78999998654
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=8e-06 Score=95.78 Aligned_cols=290 Identities=16% Similarity=0.131 Sum_probs=182.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C-eEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCC
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--A-YCLASCRGHEGDITDLAVSSNNALVASASN-DCIIRVWRLPDG 317 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~T--g-~~l~tL~gH~~~VtsLafSPDG~lLASGS~-DGtIrVWDl~tg 317 (1491)
|.+.|+.+.-. -.+++++++.||.++.|.-.. | +.+..++.|-+.|.+++.+-++.++.|++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 78888877655 457999999999999997543 2 344556789999999999999999999877 999999999876
Q ss_pred Cceeeec--cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcce
Q 000454 318 LPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1491)
Q Consensus 318 k~i~~L~--gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V 395 (1491)
..+..++ .-.+.+..+ .++...-...-++.-.+|.|.|+|-....+...+ ...-|..+|
T Consensus 87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~------------------fkklH~sPV 147 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY------------------FKKLHFSPV 147 (558)
T ss_pred chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccce------------------ecccccCce
Confidence 5543332 122222221 2222111112333446788999997655433322 124488899
Q ss_pred EEEEECCCCCEEEEecCCceEEEEeCCCC-C-----CCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 396 FCCAFNANGTVFVTGSSDTLARVWNACKP-N-----TDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 396 ~slafSPDG~~LasGs~DG~IrVWDl~t~-~-----~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
.++.+++-+..+++....|.|.-|..... + ..-.......+..+........++.|+|++
T Consensus 148 ~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-------------- 213 (558)
T KOG0882|consen 148 KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-------------- 213 (558)
T ss_pred EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc--------------
Confidence 99999999999999999999999998621 0 000011111222233344567788888876
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCC---CCceeccCCC-CCeeE
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG---GPRQRILPTP-RGVNM 545 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~l~~h~-~~Vts 545 (1491)
..+.+-+.|..|+++++.+++............+.....+.......-+ .....+..+. ..-+.
T Consensus 214 ------------~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~ 281 (558)
T KOG0882|consen 214 ------------AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN 281 (558)
T ss_pred ------------CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence 5778888999999999998775433222111111110000000000000 0001111222 23456
Q ss_pred EEEcCCCCEEEEEeccceEEEEECCCCceEEEE
Q 000454 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL 578 (1491)
Q Consensus 546 VafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL 578 (1491)
++|...|++|+-|+.=| |+|.++.++.+++.+
T Consensus 282 ~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 282 AVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred eEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 88999999999887654 899999998887766
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.6e-06 Score=99.25 Aligned_cols=122 Identities=28% Similarity=0.335 Sum_probs=96.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceee
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~ 322 (1491)
..+|+.+.++......-.+++...+.+|....+.+.. +-||-.-+++|+|+||+++|+++..|..|+|-.......+..
T Consensus 110 ~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies 188 (390)
T KOG3914|consen 110 PTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES 188 (390)
T ss_pred cceeeeeeccceEEEEeecCCceeeeeecccccCcch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh
Confidence 3445555555444444455677788888887755443 458999999999999999999999999999988776655555
Q ss_pred e-ccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceee
Q 000454 323 L-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1491)
Q Consensus 323 L-~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~ 369 (1491)
| -||+..|..++..++. .|++++.|++|++||+.+++++..+.
T Consensus 189 fclGH~eFVS~isl~~~~----~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 189 FCLGHKEFVSTISLTDNY----LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred hccccHhheeeeeeccCc----eeeecCCCCcEEEEecccCCcccccc
Confidence 4 4799999999999874 58999999999999999999886654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.4e-05 Score=82.30 Aligned_cols=245 Identities=10% Similarity=-0.016 Sum_probs=150.5
Q ss_pred CeEEEEECCCCe--EEEEEecCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECCCCCc-eeeeccCCCceEEEEec
Q 000454 265 RLVKIWSMETAY--CLASCRGHEGDITDLAVSS-----NNALVASASNDCIIRVWRLPDGLP-ISVLRGHTAAVTAIAFS 336 (1491)
Q Consensus 265 GtIrIWDl~Tg~--~l~tL~gH~~~VtsLafSP-----DG~lLASGS~DGtIrVWDl~tgk~-i~~L~gHs~~VtsLaFS 336 (1491)
..|-+|++.+.. .+..+ +.|.|.| .-.+||.|+.-|...+|...+... +.....|...|+-+.=.
T Consensus 52 ~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 52 ISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY 124 (344)
T ss_pred eeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence 456677765443 22222 3344544 334899999999999999886543 33334444444333222
Q ss_pred CCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceE
Q 000454 337 PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 416 (1491)
Q Consensus 337 Pdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~I 416 (1491)
-+.. ..+..++.|.++++.++..+........ ..-.+.++++++|++++++.+....|
T Consensus 125 cd~~--~~~~i~sndht~k~~~~~~~s~~~~~h~--------------------~~~~~ns~~~snd~~~~~~Vgds~~V 182 (344)
T KOG4532|consen 125 CDLK--FPLNIASNDHTGKTMVVSGDSNKFAVHN--------------------QNLTQNSLHYSNDPSWGSSVGDSRRV 182 (344)
T ss_pred cccc--cceeeccCCcceeEEEEecCcccceeec--------------------cccceeeeEEcCCCceEEEecCCCcc
Confidence 2222 2577888899999998876554333321 11237899999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCceee-eecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEE
Q 000454 417 RVWNACKPNTDDSDQPNHEID-VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAII 495 (1491)
Q Consensus 417 rVWDl~t~~~~~s~~~~~~i~-~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrI 495 (1491)
..|.+.... ..... .....++.-.+..|+.. ...||++..||++.|
T Consensus 183 f~y~id~~s-------ey~~~~~~a~t~D~gF~~S~s~~--------------------------~~~FAv~~Qdg~~~I 229 (344)
T KOG4532|consen 183 FRYAIDDES-------EYIENIYEAPTSDHGFYNSFSEN--------------------------DLQFAVVFQDGTCAI 229 (344)
T ss_pred eEEEeCCcc-------ceeeeeEecccCCCceeeeeccC--------------------------cceEEEEecCCcEEE
Confidence 999886421 11111 22223333445555543 258999999999999
Q ss_pred EecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCC--EEEEEeccceEEEEECCCCc
Q 000454 496 WIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR--FVLAAIMDCRICVWNAADGS 573 (1491)
Q Consensus 496 WDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~--~LaSGs~DG~IrIWDl~tgk 573 (1491)
||++..... + ......-..|.+.+..+.|++.|. +|+..-.-+.+.|.|++++.
T Consensus 230 ~DVR~~~tp------------------m------~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 230 YDVRNMATP------------------M------AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred EEecccccc------------------h------hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 999963210 0 001111233778899999998764 35555556789999999987
Q ss_pred eEEEEeCC-------C-CCeEEEEEecCCC
Q 000454 574 LVHSLTGH-------T-ESTYVLDVHPFNP 595 (1491)
Q Consensus 574 ll~tL~gH-------s-~~VtsLafSPdd~ 595 (1491)
-.+.+... . ..|+.-.|+..+.
T Consensus 286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 286 NHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred eeeEEecCccccccccccccccccccCCCc
Confidence 76655322 2 2255556655333
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.6e-06 Score=94.98 Aligned_cols=160 Identities=18% Similarity=0.120 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCCc----eeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCC
Q 000454 288 ITDLAVSSNNALVASASNDCIIRVWRLPDGLP----ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1491)
Q Consensus 288 VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~----i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~ 363 (1491)
+..+.+++.+++||.+..+....++++..... +... .-...-+++.|..+.........++....+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34455677788888887777766666644332 1111 122333455555554422233334445556666655433
Q ss_pred ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCC
Q 000454 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1491)
Q Consensus 364 ~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1491)
+.. ..+|-..++.++|+||+++|+++..|..|+|-..... ...-....||.
T Consensus 144 ~~~---------------------~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~--------f~IesfclGH~ 194 (390)
T KOG3914|consen 144 CEP---------------------ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT--------FVIESFCLGHK 194 (390)
T ss_pred cch---------------------hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc--------cchhhhccccH
Confidence 322 2358888999999999999999999999999876431 22223346799
Q ss_pred CCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCC
Q 000454 444 NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSH 504 (1491)
Q Consensus 444 ~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~ 504 (1491)
.-|..++..++ ..|++++.|++|++||+.+++..
T Consensus 195 eFVS~isl~~~---------------------------~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 195 EFVSTISLTDN---------------------------YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hheeeeeeccC---------------------------ceeeecCCCCcEEEEecccCCcc
Confidence 99999998875 36899999999999999997754
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0002 Score=83.27 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=75.4
Q ss_pred EEEEEEcC-CCCEEEEEeCCC-eEEEEECCCCeEEEEEecCCCCeE--EEEEcCCCCEEEEEEC-----CCeEEEEECC-
Q 000454 246 VYCAIFDR-SGRYVITGSDDR-LVKIWSMETAYCLASCRGHEGDIT--DLAVSSNNALVASASN-----DCIIRVWRLP- 315 (1491)
Q Consensus 246 Vt~VaFSp-DG~~LATGS~DG-tIrIWDl~Tg~~l~tL~gH~~~Vt--sLafSPDG~lLASGS~-----DGtIrVWDl~- 315 (1491)
...++.+| .+..+|.+-.-| ...+||..+++.+..+....+.-. .-+||+||++|++.=. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34678888 566677776665 578899999999887764333221 4579999999998643 4889999998
Q ss_pred CCCceeeeccCCCceEEEEecCCCCceEEEEEE
Q 000454 316 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348 (1491)
Q Consensus 316 tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSg 348 (1491)
+.+.+..+..|.-.-..|.+.||+. .|+++
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~---tLvVA 116 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGE---TLVVA 116 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCC---EEEEE
Confidence 5677888888877778899999996 55554
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00012 Score=82.98 Aligned_cols=148 Identities=19% Similarity=0.261 Sum_probs=95.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEEe---cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceee
Q 000454 248 CAIFDRSGRYVITGSDDRLVKIWSMETA--YCLASCR---GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1491)
Q Consensus 248 ~VaFSpDG~~LATGS~DGtIrIWDl~Tg--~~l~tL~---gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~ 322 (1491)
.++.+.+|+.||.- .|..|-|-...+. ..+.... ...-.-.-++||||+.+||.+...|+|+|+|+.. ..+..
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 36788999988876 5667777766543 2333333 2233457899999999999999999999999864 33333
Q ss_pred ecc-------CCCceEEEEecCCCCc---eEEEEEEeCCCcEEEEccCCCC---ccceeecCCCCCcccCCCCCCCCCCC
Q 000454 323 LRG-------HTAAVTAIAFSPRPGS---VYQLLSSSDDGTCRIWDARYSQ---FSPRIYIPRPSDAVAGRNMAPSSSAG 389 (1491)
Q Consensus 323 L~g-------Hs~~VtsLaFSPdg~s---~~~LaSgS~DGtVrIWDl~tg~---~~~~i~~~~~~~~~~g~~~~~~~s~~ 389 (1491)
+.. -...|..|.|.+-..+ ...|++-...|.++-|-+..+. ...... .....
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hs---------------fsf~~ 144 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHS---------------FSFSS 144 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEE---------------EEecc
Confidence 321 2356777878664311 1367777888888777653321 111110 01112
Q ss_pred CCCcceEEEEECCCCCEEEEecC
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSS 412 (1491)
Q Consensus 390 ~h~~~V~slafSPDG~~LasGs~ 412 (1491)
.....|.++.|+|..++|++|+.
T Consensus 145 ~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 145 HYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred cCCCceeEEEEcCCCCEEEEecc
Confidence 34668999999999898888774
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.6e-05 Score=84.71 Aligned_cols=245 Identities=13% Similarity=0.065 Sum_probs=156.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe-EEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCCceeeeccCCCceE
Q 000454 254 SGRYVITGSDDRLVKIWSMETAY-CLASCRGHEGDITDLAVSSNN-ALVASASNDCIIRVWRLPDGLPISVLRGHTAAVT 331 (1491)
Q Consensus 254 DG~~LATGS~DGtIrIWDl~Tg~-~l~tL~gH~~~VtsLafSPDG-~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~Vt 331 (1491)
...+||.|+.-|...+|...+.. .+..+..|...|+-+.=..+. --+..++.|.++++.++.-+..-..+.-..-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 34589999999999999998654 344445555555433322222 2456677888888888765433222221112388
Q ss_pred EEEecCCCCceEEEEEEeCCCcEEEEccCCCC-ccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEe
Q 000454 332 AIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ-FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410 (1491)
Q Consensus 332 sLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~-~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasG 410 (1491)
++++++++. ++++.+....|.+|.+.... .+..++. .+....-.+..|+.....+|++
T Consensus 163 s~~~snd~~---~~~~Vgds~~Vf~y~id~~sey~~~~~~------------------a~t~D~gF~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 163 SLHYSNDPS---WGSSVGDSRRVFRYAIDDESEYIENIYE------------------APTSDHGFYNSFSENDLQFAVV 221 (344)
T ss_pred eeEEcCCCc---eEEEecCCCcceEEEeCCccceeeeeEe------------------cccCCCceeeeeccCcceEEEE
Confidence 999999998 89999999999999886432 2222211 2233445788999999999999
Q ss_pred cCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCC
Q 000454 411 SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD 490 (1491)
Q Consensus 411 s~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~D 490 (1491)
..||++.|||++...... .........|.+.+..+.|++.|. -++|+..-.-
T Consensus 222 ~Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~------------------------lDLLf~sEhf 273 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGL------------------------LDLLFISEHF 273 (344)
T ss_pred ecCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCc------------------------ceEEEEecCc
Confidence 999999999998643221 112233456899999999998652 2467777777
Q ss_pred CeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCC-CCeeEEEEcCCCCEEEEEeccceEEEEEC
Q 000454 491 GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTP-RGVNMIVWSLDNRFVLAAIMDCRICVWNA 569 (1491)
Q Consensus 491 GtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~-~~VtsVafSPDG~~LaSGs~DG~IrIWDl 569 (1491)
+.+.+.|+++.+........ ......|. ..|...+|+.++.-+.+...+ .+.=|++
T Consensus 274 s~~hv~D~R~~~~~q~I~i~----------------------~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni 330 (344)
T KOG4532|consen 274 SRVHVVDTRNYVNHQVIVIP----------------------DDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNI 330 (344)
T ss_pred ceEEEEEcccCceeeEEecC----------------------ccccccccccccccccccCCCcccccccch-hhheeec
Confidence 88899999875532111100 00112222 337777788877776666544 3444554
Q ss_pred C
Q 000454 570 A 570 (1491)
Q Consensus 570 ~ 570 (1491)
.
T Consensus 331 ~ 331 (344)
T KOG4532|consen 331 L 331 (344)
T ss_pred c
Confidence 3
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00025 Score=80.32 Aligned_cols=215 Identities=13% Similarity=0.117 Sum_probs=114.7
Q ss_pred CcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCC
Q 000454 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1491)
Q Consensus 392 ~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1491)
..+-..++||||+.+||.+...|+|++||+...... ...+.. .....-...|..+.|....
T Consensus 43 ~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~--~~~~d~~~Aiagl~Fl~~~---------------- 103 (282)
T PF15492_consen 43 NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAM--SFPGDLSDAIAGLIFLEYK---------------- 103 (282)
T ss_pred CchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCccc--ccCCccccceeeeEeeccc----------------
Confidence 344678999999999999999999999999632111 000100 0001112345555554321
Q ss_pred ccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceec-cCCCCCeeEEEEcC
Q 000454 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI-LPTPRGVNMIVWSL 550 (1491)
Q Consensus 472 ~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l-~~h~~~VtsVafSP 550 (1491)
....| ...|++....|.++-|-+..+... .+.... ...+ .....+|++++|+|
T Consensus 104 --~s~~w--s~ELlvi~Y~G~L~Sy~vs~gt~q----~y~e~h------------------sfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 104 --KSAQW--SYELLVINYRGQLRSYLVSVGTNQ----GYQENH------------------SFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred --ccccc--ceeEEEEeccceeeeEEEEcccCC----cceeeE------------------EEEecccCCCceeEEEEcC
Confidence 00111 125777778888877765321100 000000 0111 22467899999999
Q ss_pred CCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEE-EEEeCCC------cEEEEeCCCCceEEEEee
Q 000454 551 DNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIA-MSAGYDG------KTIVWDIWEGIPIRIYEI 623 (1491)
Q Consensus 551 DG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lL-aSgS~DG------tIrIWDl~tGk~l~~l~~ 623 (1491)
..++|++|+.... .++. -.+....+++-.+-.+.+.+. ++...|+ +..+|.+-+.+.......
T Consensus 158 ~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 227 (282)
T PF15492_consen 158 KHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQ 227 (282)
T ss_pred CCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecccc
Confidence 9999888764321 0000 001111222222211122222 1122222 123444433322222222
Q ss_pred CCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 000454 624 SRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1491)
Q Consensus 624 h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~ 661 (1491)
....|..|..||||+.||+...+|.|.+|++..-..+.
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence 45679999999999999999999999999997655544
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00037 Score=79.60 Aligned_cols=230 Identities=14% Similarity=0.074 Sum_probs=145.2
Q ss_pred EEEEcC-CCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEec-CCCCceEEEEEEeCCCcEEEEccCCCCccce
Q 000454 290 DLAVSS-NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS-PRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367 (1491)
Q Consensus 290 sLafSP-DG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFS-Pdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~ 367 (1491)
+++|.+ ++.++++-...+.|..|+..++.... +.... ...+++. +++ .|+.+...+ +.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g----~l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG----RLYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS----EEEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC----EEEEEEcCc-eEEEecCCCcEEEE
Confidence 578888 67777777678999999988775432 22222 6777787 664 566666655 55669888765444
Q ss_pred eecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCC--------ceEEEEeCCCCCCCCCCCCCceeeee
Q 000454 368 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD--------TLARVWNACKPNTDDSDQPNHEIDVL 439 (1491)
Q Consensus 368 i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~D--------G~IrVWDl~t~~~~~s~~~~~~i~~l 439 (1491)
...+. .......++.+++.++|++.++.... |.|..++.. ..+..+
T Consensus 76 ~~~~~---------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-----------~~~~~~ 129 (246)
T PF08450_consen 76 ADLPD---------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-----------GKVTVV 129 (246)
T ss_dssp EEEET---------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-----------SEEEEE
T ss_pred eeccC---------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-----------CeEEEE
Confidence 32210 01135568899999999977765433 556666653 122333
Q ss_pred cCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCC
Q 000454 440 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 519 (1491)
Q Consensus 440 ~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~ 519 (1491)
...-...+.|+|+|++ ..++++-+..+.|..+++..........
T Consensus 130 ~~~~~~pNGi~~s~dg-------------------------~~lyv~ds~~~~i~~~~~~~~~~~~~~~----------- 173 (246)
T PF08450_consen 130 ADGLGFPNGIAFSPDG-------------------------KTLYVADSFNGRIWRFDLDADGGELSNR----------- 173 (246)
T ss_dssp EEEESSEEEEEEETTS-------------------------SEEEEEETTTTEEEEEEEETTTCCEEEE-----------
T ss_pred ecCcccccceEECCcc-------------------------hheeecccccceeEEEeccccccceeee-----------
Confidence 3334567889999986 1245677888888888886422100000
Q ss_pred CCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEe-cCCCcEE
Q 000454 520 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH-PFNPRIA 598 (1491)
Q Consensus 520 ~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafS-Pdd~~lL 598 (1491)
.....+.......-.+++..+|++.++....+.|.+++.. |+++..+......+++++|. ++...++
T Consensus 174 -----------~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 174 -----------RVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp -----------EEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred -----------eeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence 0000111112346789999999988888889999999987 99998887666689999995 4445566
Q ss_pred EEE
Q 000454 599 MSA 601 (1491)
Q Consensus 599 aSg 601 (1491)
+|.
T Consensus 242 vTt 244 (246)
T PF08450_consen 242 VTT 244 (246)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00038 Score=85.37 Aligned_cols=267 Identities=14% Similarity=0.086 Sum_probs=154.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEE-EEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEE-
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITD-LAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTA- 332 (1491)
Q Consensus 255 G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~Vts-LafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~Vts- 332 (1491)
+..|+.++.+|.|..+|..+|+.+....... .+.+ ..+ .+..++.++.++.|..+|..+|+.+..+......+..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 5567778889999999999999988776432 2221 122 2446667778899999999999988776532111100
Q ss_pred EEecC--CCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECC--CCCEEE
Q 000454 333 IAFSP--RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNA--NGTVFV 408 (1491)
Q Consensus 333 LaFSP--dg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSP--DG~~La 408 (1491)
..-+| .+. .++.++.+|.|..+|..+++.........+.... .......+..+| .+..++
T Consensus 197 ~~~sP~v~~~---~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~-------------~~~~~~~~~~sP~v~~~~vy 260 (394)
T PRK11138 197 GESAPATAFG---GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT-------------EIDRLVDVDTTPVVVGGVVY 260 (394)
T ss_pred CCCCCEEECC---EEEEEcCCCEEEEEEccCChhhheeccccCCCcc-------------chhcccccCCCcEEECCEEE
Confidence 00111 112 5677788999999999998876554321111000 000000011112 244566
Q ss_pred EecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEe
Q 000454 409 TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 488 (1491)
Q Consensus 409 sGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS 488 (1491)
+++.+|.+..+|+.+++. +-... ......+.. .++.++.++
T Consensus 261 ~~~~~g~l~ald~~tG~~---------~W~~~--~~~~~~~~~----------------------------~~~~vy~~~ 301 (394)
T PRK11138 261 ALAYNGNLVALDLRSGQI---------VWKRE--YGSVNDFAV----------------------------DGGRIYLVD 301 (394)
T ss_pred EEEcCCeEEEEECCCCCE---------EEeec--CCCccCcEE----------------------------ECCEEEEEc
Confidence 677789999999876431 11100 000111111 135788888
Q ss_pred CCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEE
Q 000454 489 RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 568 (1491)
Q Consensus 489 ~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWD 568 (1491)
.+|.+..+|..+++. .|..... . .....+.++ .+.+|++++.+|.|+++|
T Consensus 302 ~~g~l~ald~~tG~~-----~W~~~~~----------------------~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 302 QNDRVYALDTRGGVE-----LWSQSDL----------------------L-HRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CCCeEEEEECCCCcE-----EEccccc----------------------C-CCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 999999999987542 2321100 0 000111111 245778889999999999
Q ss_pred CCCCceEEEEeCCCCCeEE-EEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 569 AADGSLVHSLTGHTESTYV-LDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 569 l~tgkll~tL~gHs~~Vts-LafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
..+|+.+....-....+.+ ..+. ++ .|+.++.||.|+.+++
T Consensus 352 ~~tG~~~~~~~~~~~~~~s~P~~~--~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 352 REDGRFVAQQKVDSSGFLSEPVVA--DD-KLLIQARDGTVYAITR 393 (394)
T ss_pred CCCCCEEEEEEcCCCcceeCCEEE--CC-EEEEEeCCceEEEEeC
Confidence 9999998877644333332 2221 44 4456788999888764
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-05 Score=88.60 Aligned_cols=111 Identities=19% Similarity=0.315 Sum_probs=81.2
Q ss_pred CeeEEEEcCCCC-EEEEEeccceEEEEECCCCceE-EEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 000454 542 GVNMIVWSLDNR-FVLAAIMDCRICVWNAADGSLV-HSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619 (1491)
Q Consensus 542 ~VtsVafSPDG~-~LaSGs~DG~IrIWDl~tgkll-~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~ 619 (1491)
.|++++-+|..+ .+++|+.||.+-+||.+..... ..+..|..+|+.+-|||.++..|++++.||.+.-||..+ +.+.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l~ 259 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFLS 259 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ceEE
Confidence 388888888654 5667889999999999887543 356889999999999999999999999999999999853 3222
Q ss_pred EEee--------CCcce--------------EEE-EEcCCCCEEEEEeCCCcEEEEE
Q 000454 620 IYEI--------SRFRL--------------VDG-KFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 620 ~l~~--------h~~~V--------------tsl-afSPDG~~LAsgs~DG~I~IWd 653 (1491)
.-.. ...+| .++ .|.--|..|++|++-+.|++++
T Consensus 260 i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 260 ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 1000 00011 111 3444678889988888888875
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00026 Score=87.36 Aligned_cols=226 Identities=6% Similarity=-0.014 Sum_probs=125.0
Q ss_pred eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeC---CCcEEEEccCCCCccceeecCCCCCcccCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD---DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~---DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~ 384 (1491)
.|.+-|.. |...+.+... +.+....|+|+++. .++..+. ...|.++|+.+++......
T Consensus 170 ~l~~~d~d-g~~~~~~~~~-~~~~~p~wSpDG~~--~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--------------- 230 (419)
T PRK04043 170 NIVLADYT-LTYQKVIVKG-GLNIFPKWANKEQT--AFYYTSYGERKPTLYKYNLYTGKKEKIAS--------------- 230 (419)
T ss_pred eEEEECCC-CCceeEEccC-CCeEeEEECCCCCc--EEEEEEccCCCCEEEEEECCCCcEEEEec---------------
Confidence 45555553 3333334333 37889999999872 1333332 3568888998776433221
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEe-cC--CceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVTG-SS--DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~LasG-s~--DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s 461 (1491)
..+......|+|||+.|+.. +. +..|.++++.++ ....+..+........|+|+|
T Consensus 231 ------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g----------~~~~LT~~~~~d~~p~~SPDG------ 288 (419)
T PRK04043 231 ------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK----------TLTQITNYPGIDVNGNFVEDD------ 288 (419)
T ss_pred ------CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC----------cEEEcccCCCccCccEECCCC------
Confidence 23345567899999877654 32 356777787542 223333333333456799987
Q ss_pred cccCCCCCCCccccccccCCCeEEEEeCCC--eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCC
Q 000454 462 LADSSKEDSTPKFKNSWFCHDNIVTCSRDG--SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1491)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG--tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1491)
...+++....| .|.++|+.+++ ..++...
T Consensus 289 -------------------~~I~F~Sdr~g~~~Iy~~dl~~g~------------------------------~~rlt~~ 319 (419)
T PRK04043 289 -------------------KRIVFVSDRLGYPNIFMKKLNSGS------------------------------VEQVVFH 319 (419)
T ss_pred -------------------CEEEEEECCCCCceEEEEECCCCC------------------------------eEeCccC
Confidence 12333433444 45555655422 1111111
Q ss_pred CCCeeEEEEcCCCCEEEEEecc---------ceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC--cEE
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMD---------CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG--KTI 608 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~D---------G~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DG--tIr 608 (1491)
.. ....|||||++|+..... ..|++.|+.++... .+... .......|+|++..++++....+ .|.
T Consensus 320 g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~ 395 (419)
T PRK04043 320 GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALG 395 (419)
T ss_pred CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEE
Confidence 11 124899999998876643 36889999888653 34332 22335889996665555544333 355
Q ss_pred EEeCCCCceEEEEeeCCcce
Q 000454 609 VWDIWEGIPIRIYEISRFRL 628 (1491)
Q Consensus 609 IWDl~tGk~l~~l~~h~~~V 628 (1491)
+.++ +|.....+....+.+
T Consensus 396 ~~~l-~g~~~~~l~~~~g~~ 414 (419)
T PRK04043 396 IIRL-NYNKSFLFPLKVGKI 414 (419)
T ss_pred EEec-CCCeeEEeecCCCcc
Confidence 6666 444444444333333
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.6e-06 Score=67.64 Aligned_cols=38 Identities=21% Similarity=0.686 Sum_probs=36.8
Q ss_pred eeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000454 234 QNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 271 (1491)
Q Consensus 234 k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWD 271 (1491)
++++++.+|.+.|++|+|+|++.+||+|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 67899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00042 Score=77.97 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=89.4
Q ss_pred CCCeEEEEECCCCeEEEEEecC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCC
Q 000454 263 DDRLVKIWSMETAYCLASCRGH--EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 340 (1491)
Q Consensus 263 ~DGtIrIWDl~Tg~~l~tL~gH--~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~ 340 (1491)
++|+|..||..+|+.+....-- .....+. ..+++.+|++++.++.|..||..+|+.+..+.. ...+.......++
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~- 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG- 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT-
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccc-
Confidence 4789999999999999887631 1222222 233566777878999999999999998877764 2222111222222
Q ss_pred ceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEe
Q 000454 341 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420 (1491)
Q Consensus 341 s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWD 420 (1491)
.+++++.++.|..+|..+|+.+......... .......+.....+..++++..++.|..+|
T Consensus 78 ---~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d 138 (238)
T PF13360_consen 78 ---RVYVGTSDGSLYALDAKTGKVLWSIYLTSSP----------------PAGVRSSSSPAVDGDRLYVGTSSGKLVALD 138 (238)
T ss_dssp ---EEEEEETTSEEEEEETTTSCEEEEEEE-SSC----------------TCSTB--SEEEEETTEEEEEETCSEEEEEE
T ss_pred ---ccccccceeeeEecccCCcceeeeecccccc----------------ccccccccCceEecCEEEEEeccCcEEEEe
Confidence 5777778889999999999987763211000 000111122222377888888899999999
Q ss_pred CCC
Q 000454 421 ACK 423 (1491)
Q Consensus 421 l~t 423 (1491)
+.+
T Consensus 139 ~~t 141 (238)
T PF13360_consen 139 PKT 141 (238)
T ss_dssp TTT
T ss_pred cCC
Confidence 865
|
... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.6e-05 Score=88.33 Aligned_cols=296 Identities=13% Similarity=0.097 Sum_probs=189.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--C-CceeeeccCCCceEEEEecCCCCceEEEEEEeC-CCcEEEEcc
Q 000454 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPD--G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD-DGTCRIWDA 359 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~t--g-k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~-DGtVrIWDl 359 (1491)
|...|+.+... -.+++.+++.||.++.|--.. | ..+..+..|-+.|.+++.+-++. ++.+.+. |..++++|+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~---L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW---LFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce---eEeeccCcccceeEEEe
Confidence 77777777654 456999999999999997432 2 34555678889999999999986 7778677 999999999
Q ss_pred CCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCC--CEEEE-ecCCceEEEEeCCCCCCCCCCCCCcee
Q 000454 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG--TVFVT-GSSDTLARVWNACKPNTDDSDQPNHEI 436 (1491)
Q Consensus 360 ~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG--~~Las-Gs~DG~IrVWDl~t~~~~~s~~~~~~i 436 (1491)
.+-..+..+.+... .+.+ ++..++.. ..|++ .-.+|.|.|+|-.... ....
T Consensus 84 En~DminmiKL~~l------------------Pg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~-------~q~~ 137 (558)
T KOG0882|consen 84 ENFDMINMIKLVDL------------------PGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF-------CQDG 137 (558)
T ss_pred eccchhhhcccccC------------------CCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCc-------Cccc
Confidence 87665544322111 1111 11122211 13333 3357889999875422 1234
Q ss_pred eeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCC-CCCCccccccccccc
Q 000454 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS-RRSHPKAARWTQAYH 515 (1491)
Q Consensus 437 ~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s-~k~~~~~~~~~~~~~ 515 (1491)
..-.-|..+|..+.+.+.+ +.+++....|.|..|.... -+.......|.
T Consensus 138 ~fkklH~sPV~~i~y~qa~--------------------------Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~---- 187 (558)
T KOG0882|consen 138 YFKKLHFSPVKKIRYNQAG--------------------------DSAVSIDISGMVEYWSAEGPFQFPRTNLNFE---- 187 (558)
T ss_pred eecccccCceEEEEeeccc--------------------------cceeeccccceeEeecCCCcccCcccccccc----
Confidence 4456688999999998865 6788888899999997662 11000001111
Q ss_pred cCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeC---------------
Q 000454 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG--------------- 580 (1491)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~g--------------- 580 (1491)
.....-+..+.......+++.|+|+|..+.+-..|..|+++++.+|++++.+..
T Consensus 188 -----------~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l 256 (558)
T KOG0882|consen 188 -----------LKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGL 256 (558)
T ss_pred -----------ccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccc
Confidence 111111222333455678999999999999999999999999999987665421
Q ss_pred -----------------CCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCC-----------------
Q 000454 581 -----------------HTE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR----------------- 625 (1491)
Q Consensus 581 -----------------Hs~-~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~----------------- 625 (1491)
|.. .-+.+.|.. .+.+|+-++-=| |+|.++.++++++.+-...
T Consensus 257 ~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~ 334 (558)
T KOG0882|consen 257 MHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSN 334 (558)
T ss_pred ceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhcc
Confidence 111 123345554 456666555443 8999999998887763110
Q ss_pred cce--------EEEEEcCCCCEEEEEeCCCcEEEE
Q 000454 626 FRL--------VDGKFSPDGASIILSDDVGQLYIL 652 (1491)
Q Consensus 626 ~~V--------tslafSPDG~~LAsgs~DG~I~IW 652 (1491)
.+. -.+.|-+|-..++++-...++++|
T Consensus 335 ~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 335 LAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred chhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 000 012366677777777777888888
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00032 Score=78.91 Aligned_cols=222 Identities=14% Similarity=0.094 Sum_probs=134.0
Q ss_pred CCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCC
Q 000454 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1491)
Q Consensus 351 DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~ 430 (1491)
+|+|..||..+++.+....+.. ......+.. .+++..+++++.++.|..||..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~------------------~~~~~~~~~-~~~~~~v~~~~~~~~l~~~d~~tG------ 56 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP------------------GIGGPVATA-VPDGGRVYVASGDGNLYALDAKTG------ 56 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS------------------SCSSEEETE-EEETTEEEEEETTSEEEEEETTTS------
T ss_pred CCEEEEEECCCCCEEEEEECCC------------------CCCCccceE-EEeCCEEEEEcCCCEEEEEECCCC------
Confidence 6889999999988877764311 011122112 235666777788999999998763
Q ss_pred CCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCcccccc
Q 000454 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
+.+-.... ...+..... .....++.++.++.|..+|..+++. .|
T Consensus 57 ---~~~W~~~~-~~~~~~~~~---------------------------~~~~~v~v~~~~~~l~~~d~~tG~~-----~W 100 (238)
T PF13360_consen 57 ---KVLWRFDL-PGPISGAPV---------------------------VDGGRVYVGTSDGSLYALDAKTGKV-----LW 100 (238)
T ss_dssp ---EEEEEEEC-SSCGGSGEE---------------------------EETTEEEEEETTSEEEEEETTTSCE-----EE
T ss_pred ---CEEEEeec-cccccceee---------------------------ecccccccccceeeeEecccCCcce-----ee
Confidence 23322222 111111101 1135778888899999999888663 23
Q ss_pred cc-ccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCC-----
Q 000454 511 TQ-AYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES----- 584 (1491)
Q Consensus 511 ~~-~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~----- 584 (1491)
.. .... .............++..++++..++.|..+|+.+|+.+.........
T Consensus 101 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 101 SIYLTSS---------------------PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEEE-SS---------------------CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred eeccccc---------------------cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence 21 1000 00001111222223788888888999999999999999888764422
Q ss_pred -----e-EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 000454 585 -----T-YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 658 (1491)
Q Consensus 585 -----V-tsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~ 658 (1491)
+ ..+.+. ++ .++.++.++.+..+|+.+|+.+.... ...+.. ....++..|++++.+|.|.+||+.+|+
T Consensus 160 ~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 160 SSFSDINGSPVIS--DG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEETTEEEEEECC--TT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred eeecccccceEEE--CC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 1 222222 34 55556667754444999999775333 222222 256788888888899999999999997
Q ss_pred cc
Q 000454 659 SQ 660 (1491)
Q Consensus 659 ~~ 660 (1491)
..
T Consensus 234 ~~ 235 (238)
T PF13360_consen 234 VV 235 (238)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.8e-05 Score=85.09 Aligned_cols=196 Identities=13% Similarity=0.157 Sum_probs=118.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE------------EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000454 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL------------ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1491)
Q Consensus 246 Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l------------~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWD 313 (1491)
|+.+.|+.+ ..|+++..++.+......++.+. +.+..|..+-.+-+.+-.++.++++..||.+.+.+
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 566666644 35677766666666655444433 23333444433444444577899999999999998
Q ss_pred CCCCCce-eeec-cCCCceEEEEecCCCCceEEEEEEeCC------CcEEEEccCCCCccceeecCCCCCcccCCCCCCC
Q 000454 314 LPDGLPI-SVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDD------GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS 385 (1491)
Q Consensus 314 l~tgk~i-~~L~-gHs~~VtsLaFSPdg~s~~~LaSgS~D------GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~ 385 (1491)
.+.-..+ ..+. .|.+ -.+.+....+. ++.+..= +..++|+++..+.....
T Consensus 118 ~~~~~~~~~~i~~~~~~-~as~~~~~~~~----~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~----------------- 175 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSG-SASRKICRHGN----SILSGGCGNWNAQDNFYANTLDPIKTLIPS----------------- 175 (319)
T ss_pred chHHHhhhhhccccccc-ccccceeeccc----EEecCCcceEeeccceeeeccccccccccc-----------------
Confidence 7652111 1111 1111 11222223332 2222222 23445554422211100
Q ss_pred CCCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccccccc
Q 000454 386 SSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLAD 464 (1491)
Q Consensus 386 ~s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~ 464 (1491)
......|.+++-+|. ..++++|+.||.+.+||++.. ..+...+..|...+..|.|+|..
T Consensus 176 ---~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--------~~p~S~l~ahk~~i~eV~FHpk~--------- 235 (319)
T KOG4714|consen 176 ---KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--------AMPVSLLKAHKAEIWEVHFHPKN--------- 235 (319)
T ss_pred ---ccccccchhhhCCcccccEEEEecCCCeEEEEEcccc--------cchHHHHHHhhhhhhheeccCCC---------
Confidence 011223888888885 457788999999999999864 23566788999999999999864
Q ss_pred CCCCCCCccccccccCCCeEEEEeCCCeEEEEecCC
Q 000454 465 SSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 500 (1491)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s 500 (1491)
+..|++++.||.+..||..+
T Consensus 236 ----------------p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 ----------------PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ----------------chheeEecCCCcEEEEcCCC
Confidence 57999999999999999874
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0023 Score=83.60 Aligned_cols=260 Identities=11% Similarity=0.122 Sum_probs=146.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEcc----C
Q 000454 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA----R 360 (1491)
Q Consensus 285 ~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl----~ 360 (1491)
...|.++.|..+..-|+.+...|.|.+-|..+.... ....-...|.+++|+||.. .++..+..++|.+-.- -
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee---~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEE---LLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCc---EEEEEeCCcEEEEEeccccch
Confidence 468999999999999999999999999988766432 2223457899999999998 7777877777776432 1
Q ss_pred CCCccceeec--CCCCCcccCCCCCCCCCC---------------C---CCCcceEEEEECCCCCEEEEe-----cCCce
Q 000454 361 YSQFSPRIYI--PRPSDAVAGRNMAPSSSA---------------G---PQSHQIFCCAFNANGTVFVTG-----SSDTL 415 (1491)
Q Consensus 361 tg~~~~~i~~--~~~~~~~~g~~~~~~~s~---------------~---~h~~~V~slafSPDG~~LasG-----s~DG~ 415 (1491)
..+.+..-.. ........|+........ . .....=+.++|--||.++|+. .....
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 1111100000 000000001100000000 0 012223469999999999983 33378
Q ss_pred EEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEE---eCCCe
Q 000454 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGS 492 (1491)
Q Consensus 416 IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSg---S~DGt 492 (1491)
|+|||-. +..... -....+.-.+++|-|.| ..+++. ..|+.
T Consensus 224 irV~drE-g~Lns~---------se~~~~l~~~LsWkPsg--------------------------s~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 224 IRVYDRE-GALNST---------SEPVEGLQHSLSWKPSG--------------------------SLIAAIQCKTSDSD 267 (1265)
T ss_pred EEEeccc-chhhcc---------cCcccccccceeecCCC--------------------------CeEeeeeecCCCCc
Confidence 9999985 221111 11122333567888865 344443 44667
Q ss_pred EEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEE---EeccceEEEEEC
Q 000454 493 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA---AIMDCRICVWNA 569 (1491)
Q Consensus 493 IrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaS---Gs~DG~IrIWDl 569 (1491)
|.++.-+..+ ++. + ..........|..++|+.++..||+ ......|++|-+
T Consensus 268 IvffErNGL~-hg~-------f------------------~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 268 IVFFERNGLR-HGE-------F------------------VLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred EEEEecCCcc-ccc-------c------------------ccCCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence 8888655321 100 0 0011112223889999999999998 445556999998
Q ss_pred CCCc--eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 000454 570 ADGS--LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 570 ~tgk--ll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
.+-. +.+.+.-..... +.|+|-....+..-..+|.+.++++
T Consensus 322 ~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 322 GNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred cCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 7643 233343333222 7788744443333335555555544
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0016 Score=74.42 Aligned_cols=194 Identities=12% Similarity=0.040 Sum_probs=119.5
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEc-CCCCEEEEEECCCeEEEEECCCCCceeeecc
Q 000454 248 CAIFDR-SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVS-SNNALVASASNDCIIRVWRLPDGLPISVLRG 325 (1491)
Q Consensus 248 ~VaFSp-DG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafS-PDG~lLASGS~DGtIrVWDl~tgk~i~~L~g 325 (1491)
+++|.+ +|.++++--..+.|..|+..++.... +.... ...+++. +++.++ .+... .+.++|+.+++....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~-v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLY-VADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEE-EEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEE-EEEcC-ceEEEecCCCcEEEEeec
Confidence 678998 78888887789999999999886543 22222 7777887 665554 44454 456669988854433332
Q ss_pred -----CCCceEEEEecCCCCceEEEEEEeCC--------CcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCC
Q 000454 326 -----HTAAVTAIAFSPRPGSVYQLLSSSDD--------GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 326 -----Hs~~VtsLaFSPdg~s~~~LaSgS~D--------GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~ 392 (1491)
.....+.+++.|++. +.++.... |.|..++.. ++...... .-
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~---ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~---------------------~~ 133 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN---LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD---------------------GL 133 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS----EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE---------------------EE
T ss_pred cCCCcccCCCceEEEcCCCC---EEEEecCCCccccccccceEEECCC-CeEEEEec---------------------Cc
Confidence 345688999999986 55554433 446666665 33222110 12
Q ss_pred cceEEEEECCCCCEEE-EecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCC
Q 000454 393 HQIFCCAFNANGTVFV-TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1491)
Q Consensus 393 ~~V~slafSPDG~~La-sGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1491)
.....++|+|+++.|+ +-+..+.|..|++...... ......+..+....+....+++..+|
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~g~pDG~~vD~~G---------------- 195 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE--LSNRRVFIDFPGGPGYPDGLAVDSDG---------------- 195 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC--EEEEEEEEE-SSSSCEEEEEEEBTTS----------------
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccc--eeeeeeEEEcCCCCcCCCcceEcCCC----------------
Confidence 3467999999998665 5667888999988532110 00011122222222346677777665
Q ss_pred ccccccccCCCeEEEEeCCCeEEEEecC
Q 000454 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1491)
Q Consensus 472 ~~~~~~~~~~~~LaSgS~DGtIrIWDl~ 499 (1491)
+..++....+.|.+++..
T Consensus 196 ----------~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 196 ----------NLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp -----------EEEEEETTTEEEEEETT
T ss_pred ----------CEEEEEcCCCEEEEECCC
Confidence 466666678899999877
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00083 Score=81.23 Aligned_cols=304 Identities=15% Similarity=0.074 Sum_probs=156.2
Q ss_pred cCCCCEEEEEe---------CCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceee
Q 000454 252 DRSGRYVITGS---------DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1491)
Q Consensus 252 SpDG~~LATGS---------~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~ 322 (1491)
|||+++++... ..+.+.|||+.+++....... ...+....|||+|+.||... ++.|.++++.++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 68899888752 346899999999876554443 67899999999999999986 57899999877744332
Q ss_pred ec-c-------C---------CCceEEEEecCCCCceEEEEEEe-CCCcEEEEccCCCCccceeecCCCCCcccCCCCCC
Q 000454 323 LR-G-------H---------TAAVTAIAFSPRPGSVYQLLSSS-DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384 (1491)
Q Consensus 323 L~-g-------H---------s~~VtsLaFSPdg~s~~~LaSgS-~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~ 384 (1491)
-. + - -+.-.++-|+||++ +|+... .+..|..+.+-.......
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~---~la~~~~d~~~v~~~~~~~~~~~~~----------------- 138 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK---YLAFLRFDEREVPEYPLPDYSPPDS----------------- 138 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS---EEEEEEEE-TTS-EEEEEEESSSTE-----------------
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCC---EEEEEEECCcCCceEEeeccCCccc-----------------
Confidence 21 1 0 11235688999998 555443 444455444321100000
Q ss_pred CCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeee---ecCCCCCceEEEEccCccccccc
Q 000454 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV---LSGHENDVNYVQFSGCAVASRFS 461 (1491)
Q Consensus 385 ~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~---l~gH~~~V~sVafSpdg~as~~s 461 (1491)
.-..+..+.+-.-|.-.. .-.+.|+++.+++.. .+.. +..-..-+..+.|.+++..
T Consensus 139 ------~yp~~~~~~YPk~G~~np----~v~l~v~~~~~~~~~-------~~~~~~~~~~~~~yl~~v~W~~d~~~---- 197 (353)
T PF00930_consen 139 ------QYPEVESIRYPKAGDPNP----RVSLFVVDLASGKTT-------ELDPPNSLNPQDYYLTRVGWSPDGKR---- 197 (353)
T ss_dssp ------SS-EEEEEE--BTTS-------EEEEEEEESSSTCCC-------EE---HHHHTSSEEEEEEEEEETTEE----
T ss_pred ------cCCcccccccCCCCCcCC----ceEEEEEECCCCcEE-------EeeeccccCCCccCcccceecCCCcE----
Confidence 001233343322222111 113566777654321 1111 1233456778888877510
Q ss_pred cccCCCCCCCccccccccCCCeEEEEeCCC---eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccC
Q 000454 462 LADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538 (1491)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG---tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 538 (1491)
=.+.....+. .+.+.|+.++........ ...+
T Consensus 198 --------------------l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e-------------------------~~~~ 232 (353)
T PF00930_consen 198 --------------------LWVQWLNRDQNRLDLVLCDASTGETRVVLEE-------------------------TSDG 232 (353)
T ss_dssp --------------------EEEEEEETTSTEEEEEEEEECTTTCEEEEEE-------------------------ESSS
T ss_pred --------------------EEEEEcccCCCEEEEEEEECCCCceeEEEEe-------------------------cCCc
Confidence 0122223322 234445544321110000 0000
Q ss_pred CCCCeeEEEEc-CCCCE-EEEEeccc--eEEEEECCCCceEEEEeCCCCCeEE-EEEecCCCcEEEEEeCCC----cEEE
Q 000454 539 TPRGVNMIVWS-LDNRF-VLAAIMDC--RICVWNAADGSLVHSLTGHTESTYV-LDVHPFNPRIAMSAGYDG----KTIV 609 (1491)
Q Consensus 539 h~~~VtsVafS-PDG~~-LaSGs~DG--~IrIWDl~tgkll~tL~gHs~~Vts-LafSPdd~~lLaSgS~DG----tIrI 609 (1491)
--.....+.|. +++.. |.....+| .|++++...+. ...+....-.|.. +.|.+.++.++++|..++ .|..
T Consensus 233 Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~ 311 (353)
T PF00930_consen 233 WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYR 311 (353)
T ss_dssp SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred ceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEE
Confidence 00112234443 55554 44444555 46677776665 3455544555644 678887777777887643 5555
Q ss_pred EeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEe
Q 000454 610 WDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSD 644 (1491)
Q Consensus 610 WDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs 644 (1491)
-++..+..+..+....+.-..+.|||||++++...
T Consensus 312 v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 312 VSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 56653455556654443336899999999998654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0045 Score=78.26 Aligned_cols=315 Identities=12% Similarity=0.058 Sum_probs=163.6
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCCC------CeE--EEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccC
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEG------DIT--DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGH 326 (1491)
Q Consensus 255 G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~------~Vt--sLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gH 326 (1491)
+..|..++.++.|.-.|..+|+.+..+..... .+. .+++. ++..++.++.++.|..+|..+|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44566777789999999999998877653322 110 11111 2257788888999999999999998776543
Q ss_pred CCc-----eE-EEEecCCCCceEEEEEEe---------CCCcEEEEccCCCCccceeecCCCCCcccCCCCCCC-CCCCC
Q 000454 327 TAA-----VT-AIAFSPRPGSVYQLLSSS---------DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPS-SSAGP 390 (1491)
Q Consensus 327 s~~-----Vt-sLaFSPdg~s~~~LaSgS---------~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~-~s~~~ 390 (1491)
... |. ...+.. . .++.++ .+|.|..+|..+++.+-.+....+...... ..... .....
T Consensus 140 ~~~~~~~~i~ssP~v~~--~---~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~-~~~~~~~~~~~ 213 (488)
T cd00216 140 DQVPPGYTMTGAPTIVK--K---LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFP-TWGPDRQMWGP 213 (488)
T ss_pred CCcCcceEecCCCEEEC--C---EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCC-CCCCCcceecC
Confidence 221 11 112222 1 344443 468899999999988777654211100000 00000 00000
Q ss_pred CCcce-EEEEECCCCCEEEEecCCc------------------eEEEEeCCCCCCCCCCCCCceeeeec--CCCCCceEE
Q 000454 391 QSHQI-FCCAFNANGTVFVTGSSDT------------------LARVWNACKPNTDDSDQPNHEIDVLS--GHENDVNYV 449 (1491)
Q Consensus 391 h~~~V-~slafSPDG~~LasGs~DG------------------~IrVWDl~t~~~~~s~~~~~~i~~l~--gH~~~V~sV 449 (1491)
....| ...++.+.+..+++++.++ .|.-+|+.+++. .-... .|.......
T Consensus 214 ~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~---------~W~~~~~~~~~~~~~~ 284 (488)
T cd00216 214 GGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV---------KWFYQTTPHDLWDYDG 284 (488)
T ss_pred CCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE---------EEEeeCCCCCCccccc
Confidence 11112 1345555566777776665 566666655321 11111 110000000
Q ss_pred EEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCC
Q 000454 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1491)
Q Consensus 450 afSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~ 529 (1491)
...|.. .... .... .....++.++.+|.+...|..+++.. |.....
T Consensus 285 ~s~p~~-------~~~~------~~~g--~~~~~V~~g~~~G~l~ald~~tG~~~-----W~~~~~-------------- 330 (488)
T cd00216 285 PNQPSL-------ADIK------PKDG--KPVPAIVHAPKNGFFYVLDRTTGKLI-----SARPEV-------------- 330 (488)
T ss_pred CCCCeE-------Eecc------ccCC--CeeEEEEEECCCceEEEEECCCCcEe-----eEeEee--------------
Confidence 000000 0000 0000 00125778889999999999987633 322111
Q ss_pred CCCceeccCCCCCeeEEEEcCCCCEEEE------------------EeccceEEEEECCCCceEEEEeCCC--------C
Q 000454 530 GGPRQRILPTPRGVNMIVWSLDNRFVLA------------------AIMDCRICVWNAADGSLVHSLTGHT--------E 583 (1491)
Q Consensus 530 ~~~~~~l~~h~~~VtsVafSPDG~~LaS------------------Gs~DG~IrIWDl~tgkll~tL~gHs--------~ 583 (1491)
...++.+| ..+++ ...+|.|.-.|+.+|+.+....... .
T Consensus 331 -------------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~ 395 (488)
T cd00216 331 -------------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGF 395 (488)
T ss_pred -------------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCC
Confidence 00011111 11111 2245678888888888776654321 1
Q ss_pred Ce--EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceEE--EEEcCCCC
Q 000454 584 ST--YVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVD--GKFSPDGA 638 (1491)
Q Consensus 584 ~V--tsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~Vts--lafSPDG~ 638 (1491)
+. ..+.. .+.+|+.++.||.|+.+|..+|+.+..+... ..+.. +.|..+|+
T Consensus 396 ~~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~-~~~~a~P~~~~~~g~ 450 (488)
T cd00216 396 PHWGGSLAT---AGNLVFAGAADGYFRAFDATTGKELWKFRTP-SGIQATPMTYEVNGK 450 (488)
T ss_pred cccCcceEe---cCCeEEEECCCCeEEEEECCCCceeeEEECC-CCceEcCEEEEeCCE
Confidence 11 11222 3356777889999999999999999998753 33332 33444554
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0099 Score=66.55 Aligned_cols=109 Identities=13% Similarity=0.022 Sum_probs=79.0
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEE
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334 (1491)
Q Consensus 255 G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLa 334 (1491)
..+++.|+..+.+.--|..+|.+...-. -...|.+-+.- -|++++.|+..|.+++.++.+|..+..+.....--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4577788888888888888888776432 12233332222 477899999999999999999988877764333222334
Q ss_pred ecCCCCceEEEEEEeCCCcEEEEccCCCCcccee
Q 000454 335 FSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1491)
Q Consensus 335 FSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i 368 (1491)
..+++. .+..++.|++....|.++..++...
T Consensus 101 ~d~~~g---lIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 101 CDFDGG---LIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred EcCCCc---eEEEecCCCcEEEecccccceEEec
Confidence 556666 8999999999999999988776664
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.4e-05 Score=91.30 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=112.9
Q ss_pred EEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEE
Q 000454 408 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC 487 (1491)
Q Consensus 408 asGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSg 487 (1491)
++.+.+..|-+-++.++.. ..-.....|.+++|...+ +.++.|
T Consensus 228 fs~G~sqqv~L~nvetg~~-----------qsf~sksDVfAlQf~~s~--------------------------nLv~~G 270 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-----------QSFQSKSDVFALQFAGSD--------------------------NLVFNG 270 (425)
T ss_pred ecccccceeEEEEeecccc-----------cccccchhHHHHHhcccC--------------------------CeeEec
Confidence 3344466677888876421 111245678888887543 689999
Q ss_pred eCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC-CCCEEEEEeccceEEE
Q 000454 488 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-DNRFVLAAIMDCRICV 566 (1491)
Q Consensus 488 S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-DG~~LaSGs~DG~IrI 566 (1491)
...|.|..+|++.+.. .........-|...|+++..-. ++++|++.+++|+|++
T Consensus 271 cRngeI~~iDLR~rnq-------------------------G~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikL 325 (425)
T KOG2695|consen 271 CRNGEIFVIDLRCRNQ-------------------------GNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKL 325 (425)
T ss_pred ccCCcEEEEEeeeccc-------------------------CCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeE
Confidence 9999999999996421 0112233455788888887766 7889999999999999
Q ss_pred EECCCCce---EEEEeCCCCCeEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeeC
Q 000454 567 WNAADGSL---VHSLTGHTESTYVLDVHPF-NPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1491)
Q Consensus 567 WDl~tgkl---l~tL~gHs~~VtsLafSPd-d~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h 624 (1491)
||.+.-++ +.++.||...-.-+-++-+ ...+++++|.|...+||.+..|.++.++...
T Consensus 326 yD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 326 YDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 99987766 8999999765444444321 4467888999999999999999999988743
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00068 Score=78.89 Aligned_cols=219 Identities=15% Similarity=0.057 Sum_probs=134.8
Q ss_pred eeEEEEcC-CCCEEEEEeccce-EEEEECCCCceEEEEeCCCCCeE--EEEEecCCCcEEEEE----eCCCcEEEEeCC-
Q 000454 543 VNMIVWSL-DNRFVLAAIMDCR-ICVWNAADGSLVHSLTGHTESTY--VLDVHPFNPRIAMSA----GYDGKTIVWDIW- 613 (1491)
Q Consensus 543 VtsVafSP-DG~~LaSGs~DG~-IrIWDl~tgkll~tL~gHs~~Vt--sLafSPdd~~lLaSg----S~DGtIrIWDl~- 613 (1491)
...++.+| .+..++.+-.-|+ +.+||..+++..+.+....+.-. .-+|++++..+++|- ...|.|-|||+.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 45678888 5556666666554 78999999999887755444322 357999554444432 346899999998
Q ss_pred CCceEEEEeeCCcceEEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCcccccccceee-ecCCCc
Q 000454 614 EGIPIRIYEISRFRLVDGKFSPDGASIILSDD------------------VGQLYILNTGQGESQKDAKYDQF-FLGDYR 674 (1491)
Q Consensus 614 tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~------------------DG~I~IWdl~tG~~~~~~~~~~~-fs~D~r 674 (1491)
..+.+..|..+.-.-..+.+.|||+.|+++-. +-.|.+.|..+|+++........ -.-.-|
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 66788888877667778999999988888621 23455666777766554221111 112356
Q ss_pred ceEEccCCCEEEccccccCccccCCCccccccC------CCCCCcchhhhhhcccccccEEEcCCCCeEEEeeCCCCCCc
Q 000454 675 PLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAM------IPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQG 748 (1491)
Q Consensus 675 ~La~d~~G~vLde~tq~~p~Lw~l~~~l~d~s~------~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~s~d~~ 748 (1491)
.|+.+..|.|+.. .|.-...+..++.+..... .+.|+.... .-.--+-+|+++++|..+|+. ....+.
T Consensus 167 HLa~~~~G~V~~a-~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~---~l~~Y~gSIa~~~~g~~ia~t--sPrGg~ 240 (305)
T PF07433_consen 167 HLAVDGDGTVAFA-MQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWR---RLNGYIGSIAADRDGRLIAVT--SPRGGR 240 (305)
T ss_pred eEEecCCCcEEEE-EecCCCCCccCCeEEEEcCCCcceeccCChHHHH---hhCCceEEEEEeCCCCEEEEE--CCCCCE
Confidence 7888888888763 2222222332332222111 112211111 112236689999999999876 134459
Q ss_pred EEeccCCCcccccc-CCccc
Q 000454 749 YQLQPLADLDVMID-PLPEF 767 (1491)
Q Consensus 749 v~lw~~~~~~~lie-plp~~ 767 (1491)
+.+|+..++..+.. ++++.
T Consensus 241 ~~~~d~~tg~~~~~~~l~D~ 260 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPLPDA 260 (305)
T ss_pred EEEEECCCCCEeeccccCce
Confidence 99999988875433 34443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.8e-05 Score=63.48 Aligned_cols=39 Identities=38% Similarity=0.708 Sum_probs=37.2
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000454 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1491)
Q Consensus 275 g~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWD 313 (1491)
|+++.++.+|...|.+|+|+|++.+|++|+.|+.|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00031 Score=82.12 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=83.0
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEE
Q 000454 267 VKIWSMETAYCLASCRGHEGDITDLAVSSNNA-LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 345 (1491)
Q Consensus 267 IrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~-lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~L 345 (1491)
|++.+..+.+....+.+|...|.+|+|||... +|..++.+..|.|.|+++...+..+..+ ..+++++|.-+.. ++|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~--h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDER--HVI 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCc--cee
Confidence 77777777777777788999999999999877 7888999999999999999988888877 8899999998875 589
Q ss_pred EEEeCCCcEEEEccCCCC
Q 000454 346 LSSSDDGTCRIWDARYSQ 363 (1491)
Q Consensus 346 aSgS~DGtVrIWDl~tg~ 363 (1491)
+.|...|.|.|||++..+
T Consensus 252 YaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EEeccCceEEEEEccCCC
Confidence 999999999999998654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00011 Score=92.56 Aligned_cols=169 Identities=15% Similarity=0.228 Sum_probs=126.8
Q ss_pred ccccceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC---
Q 000454 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN--- 305 (1491)
Q Consensus 229 ~v~t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~--- 305 (1491)
+..+.+..+...--.+.|+-+. .+++++.+|...|+|.+-|..+.+.++++..|++.|.++... |++|++++.
T Consensus 163 Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--GNlLitCG~S~R 238 (1118)
T KOG1275|consen 163 DLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--GNLLITCGYSMR 238 (1118)
T ss_pred ecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--CCeEEEeecccc
Confidence 4445555555554444555444 468899999999999999999999999999999999987764 889998875
Q ss_pred ------CCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCC-ccceeecCCCCCccc
Q 000454 306 ------DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ-FSPRIYIPRPSDAVA 378 (1491)
Q Consensus 306 ------DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~-~~~~i~~~~~~~~~~ 378 (1491)
|..|+|||++..+.+.-+.-+.++ .-+.|+|.-. ..+++++..|.+.+-|..+-. ......
T Consensus 239 ~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~--t~~~V~S~sGq~q~vd~~~lsNP~~~~~--------- 306 (1118)
T KOG1275|consen 239 RYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT--TRLAVTSQSGQFQFVDTATLSNPPAGVK--------- 306 (1118)
T ss_pred cccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc--ceEEEEecccceeeccccccCCCcccee---------
Confidence 556899999988777666655554 6678888754 378999999999998843211 101110
Q ss_pred CCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeC
Q 000454 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421 (1491)
Q Consensus 379 g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl 421 (1491)
...+.+..+..++++++|..+|.|..+|.|.+|.-
T Consensus 307 --------~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 307 --------MVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred --------EEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 11224455999999999999999999999999984
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.9e-05 Score=87.80 Aligned_cols=126 Identities=16% Similarity=0.140 Sum_probs=102.9
Q ss_pred CCCCeeEEEEcCCCCEEEEEeccceEEEEECCCC-----ceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG-----SLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg-----kll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
....|.++.|...+.+|+.|+.+|.|.++|++.+ .+.+.+. |...|+++..-.+.+.+|++.+.+|+|++||+.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 5567888889888999999999999999999764 4555554 888899988777677888889999999999998
Q ss_pred CCce---EEEEeeCCcceE--EEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccc
Q 000454 614 EGIP---IRIYEISRFRLV--DGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKY 665 (1491)
Q Consensus 614 tGk~---l~~l~~h~~~Vt--slafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~ 665 (1491)
--++ +..+.+|...-. -+.+.+....|+++++|...+||.+..|.++...+.
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 7666 888888755332 345567788899999999999999999998776663
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0087 Score=78.55 Aligned_cols=265 Identities=11% Similarity=0.110 Sum_probs=141.2
Q ss_pred CceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEE
Q 000454 328 AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVF 407 (1491)
Q Consensus 328 ~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~L 407 (1491)
..|.++.|..+.. .++.+...|.|.+-|..+...... +.-...|.+++|+||+.++
T Consensus 69 ~~i~s~~fl~d~~---~i~v~~~~G~iilvd~et~~~eiv---------------------g~vd~GI~aaswS~Dee~l 124 (1265)
T KOG1920|consen 69 DEIVSVQFLADTN---SICVITALGDIILVDPETLELEIV---------------------GNVDNGISAASWSPDEELL 124 (1265)
T ss_pred cceEEEEEecccc---eEEEEecCCcEEEEcccccceeee---------------------eeccCceEEEeecCCCcEE
Confidence 5899999999886 788888899999988776543221 2245679999999999999
Q ss_pred EEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEcc-------Ccc-c-cccccccCC----CCCCCccc
Q 000454 408 VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG-------CAV-A-SRFSLADSS----KEDSTPKF 474 (1491)
Q Consensus 408 asGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSp-------dg~-a-s~~s~~~~~----~~~~~~~~ 474 (1491)
+..+..+++.+-.-.- ... ..+ .+..-....+....+-|-. ... . .+....... ......+.
T Consensus 125 ~liT~~~tll~mT~~f-~~i-~E~---~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~ 199 (1265)
T KOG1920|consen 125 ALITGRQTLLFMTKDF-EPI-AEK---PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKT 199 (1265)
T ss_pred EEEeCCcEEEEEeccc-cch-hcc---ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCc
Confidence 9998888876643310 000 000 0000000001111111111 000 0 000000000 00011111
Q ss_pred cccccC-CCeEEEE----eCC-CeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEE
Q 000454 475 KNSWFC-HDNIVTC----SRD-GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1491)
Q Consensus 475 ~~~~~~-~~~LaSg----S~D-GtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 548 (1491)
.-.|.. +++|++. -.+ ..|++||-. +... ..-.+...--.+++|
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Ln-----------------------------s~se~~~~l~~~LsW 249 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALN-----------------------------STSEPVEGLQHSLSW 249 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhh-----------------------------cccCcccccccceee
Confidence 223432 3455552 233 789999866 1100 000111222357899
Q ss_pred cCCCCEEEEEe---ccceEEEEECCC---CceEEEEeCCCCCeEEEEEecCCCcEEEE---EeCCCcEEEEeCCCCc--e
Q 000454 549 SLDNRFVLAAI---MDCRICVWNAAD---GSLVHSLTGHTESTYVLDVHPFNPRIAMS---AGYDGKTIVWDIWEGI--P 617 (1491)
Q Consensus 549 SPDG~~LaSGs---~DG~IrIWDl~t---gkll~tL~gHs~~VtsLafSPdd~~lLaS---gS~DGtIrIWDl~tGk--~ 617 (1491)
-|.|..+++-. .|+.|.+|.-.. |.....+......|..++|+. ++.+|+. ......|++|-+.+-. +
T Consensus 250 kPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~NyhWYL 328 (1265)
T KOG1920|consen 250 KPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNYHWYL 328 (1265)
T ss_pred cCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEecCeEEEE
Confidence 99999998843 456798988532 222222333334589999998 6667765 4445569999986643 1
Q ss_pred EEEEeeCCcceEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 000454 618 IRIYEISRFRLVDGKFSPDG-ASIILSDDVGQLYILNT 654 (1491)
Q Consensus 618 l~~l~~h~~~VtslafSPDG-~~LAsgs~DG~I~IWdl 654 (1491)
-..+....... +.|+|-- ..|.+-..+|.+.++++
T Consensus 329 Kq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 329 KQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred EEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 22222122222 8899843 34444447787777775
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0015 Score=82.08 Aligned_cols=105 Identities=11% Similarity=0.028 Sum_probs=78.9
Q ss_pred EcCCCCEEEEEeccceEEEEECCC-----CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-----
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAAD-----GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP----- 617 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~t-----gkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~----- 617 (1491)
+.++|++...+ ++.|.++|..+ ...+..+.- ......|+++|++..+++++..+.+|.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 45688877763 67899999988 345555543 334578999997777777888899999999987552
Q ss_pred -------EEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 000454 618 -------IRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 618 -------l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~t 656 (1491)
+.....+.+++ ..+|.++|....+-..|..|..|++..
T Consensus 361 ~~~~~~vvaevevGlGPL-HTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLGPL-HTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCCcc-eEEECCCCCEEEeEeecceeEEEehHH
Confidence 44555444444 479999999888888899999999865
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0003 Score=88.86 Aligned_cols=195 Identities=10% Similarity=0.115 Sum_probs=136.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEE
Q 000454 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAI 333 (1491)
Q Consensus 254 DG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsL 333 (1491)
++..++.|+--..+..+|+.+++..+...-....|+-|+. ++++|.+|...|+|.+-|..+.+.++++..|++.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4556777877778888999988888776655555666655 58899999999999999999999999999999999887
Q ss_pred EecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCC
Q 000454 334 AFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD 413 (1491)
Q Consensus 334 aFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~D 413 (1491)
...-+ .|+++|..+. .+.+ ..|
T Consensus 224 Dv~GN-----lLitCG~S~R--~~~l---------------------------------------------------~~D 245 (1118)
T KOG1275|consen 224 DVQGN-----LLITCGYSMR--RYNL---------------------------------------------------AMD 245 (1118)
T ss_pred eccCC-----eEEEeecccc--cccc---------------------------------------------------ccc
Confidence 76543 7888886532 1100 125
Q ss_pred ceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeE
Q 000454 414 TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSA 493 (1491)
Q Consensus 414 G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtI 493 (1491)
..|.|||++... .+..+.-+.++ .-+.|.|.- ...+++++..|..
T Consensus 246 ~FvkVYDLRmmr---------al~PI~~~~~P-~flrf~Psl-------------------------~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 246 PFVKVYDLRMMR---------ALSPIQFPYGP-QFLRFHPSL-------------------------TTRLAVTSQSGQF 290 (1118)
T ss_pred chhhhhhhhhhh---------ccCCcccccCc-hhhhhcccc-------------------------cceEEEEecccce
Confidence 667788887532 12222222222 334455542 3578889999998
Q ss_pred EEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEE
Q 000454 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 568 (1491)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWD 568 (1491)
.+-|..+... + ......+.+....+..+.+|++|..+|.|..+|.|.+|.
T Consensus 291 q~vd~~~lsN-----------------------P--~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 291 QFVDTATLSN-----------------------P--PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeccccccCC-----------------------C--ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8887543110 0 011222334455689999999999999999999999998
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00042 Score=86.98 Aligned_cols=149 Identities=15% Similarity=0.197 Sum_probs=109.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceee
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~ 322 (1491)
.+.++|++++ +++||-|..+|.|++.+.. |.. .+...|... .-+|.++++|+.||.|.|-.+-+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 4678888887 6799999999999999976 443 444445443 55799999999999999999988887776
Q ss_pred eccCCCceEEEEecCC--CCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEE
Q 000454 323 LRGHTAAVTAIAFSPR--PGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400 (1491)
Q Consensus 323 L~gHs~~VtsLaFSPd--g~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slaf 400 (1491)
+. ...++.+|+++|+ ......+++|+.-| +.++.-+=-..... .......+.|.++.|
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~------------------v~l~~~eG~I~~i~W 168 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS------------------VVLSEGEGPIHSIKW 168 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc------------------eeeecCccceEEEEe
Confidence 66 4578999999998 22223799999988 77765321110000 012346778999999
Q ss_pred CCCCCEEEEecCCceEEEEeCCCC
Q 000454 401 NANGTVFVTGSSDTLARVWNACKP 424 (1491)
Q Consensus 401 SPDG~~LasGs~DG~IrVWDl~t~ 424 (1491)
. |++||-++.+| |+|||+.+.
T Consensus 169 ~--g~lIAWand~G-v~vyd~~~~ 189 (846)
T KOG2066|consen 169 R--GNLIAWANDDG-VKVYDTPTR 189 (846)
T ss_pred c--CcEEEEecCCC-cEEEecccc
Confidence 6 77888887666 899999653
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.058 Score=68.84 Aligned_cols=110 Identities=14% Similarity=0.094 Sum_probs=69.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCC-CCeE---E-------EEEcCCCCEEEEEECCCeEEEEECCCCCceeee
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHE-GDIT---D-------LAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1491)
Q Consensus 255 G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~-~~Vt---s-------LafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L 323 (1491)
+.+|+.++.++.|.-.|..+|+.+..+.... ..+. + +++ .+..|+.++.|+.|.-.|..+|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778889999999999988765311 1111 1 122 2346777888999999999999988765
Q ss_pred ccC--C--CceEEEEecCCCCceEEEEEEe------CCCcEEEEccCCCCccceeec
Q 000454 324 RGH--T--AAVTAIAFSPRPGSVYQLLSSS------DDGTCRIWDARYSQFSPRIYI 370 (1491)
Q Consensus 324 ~gH--s--~~VtsLaFSPdg~s~~~LaSgS------~DGtVrIWDl~tg~~~~~i~~ 370 (1491)
... . ..+++.-..-++ .++++. .+|.|..+|+.+|+.+-.+..
T Consensus 147 ~~~~~~~~~~~tssP~v~~g----~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG----KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ccccccccccccCCcEEECC----EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 421 1 111111111122 344443 368999999999998776643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0039 Score=73.52 Aligned_cols=281 Identities=13% Similarity=0.112 Sum_probs=159.8
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC----------CCeEEEEECCCCCceeeeccCC-------
Q 000454 265 RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN----------DCIIRVWRLPDGLPISVLRGHT------- 327 (1491)
Q Consensus 265 GtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~----------DGtIrVWDl~tgk~i~~L~gHs------- 327 (1491)
+.|.|.|..+++.+..+.. +-.-.+.++|+++.+++++. .-.|.+||..+-.+...+.-..
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5799999999999888763 33445778999998887532 3359999999887665443111
Q ss_pred CceEEEEecCCCCceEEEEE--EeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCC-C
Q 000454 328 AAVTAIAFSPRPGSVYQLLS--SSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-G 404 (1491)
Q Consensus 328 ~~VtsLaFSPdg~s~~~LaS--gS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPD-G 404 (1491)
.....++++.+++ +++. .+---.|.|.|+...+.+..+..|. |.-.-|. .
T Consensus 95 ~~~~~~~ls~dgk---~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------------------------C~~iyP~~~ 147 (342)
T PF06433_consen 95 PYKNMFALSADGK---FLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------------------------CWLIYPSGN 147 (342)
T ss_dssp --GGGEEE-TTSS---EEEEEEESSSEEEEEEETTTTEEEEEEEGTS------------------------EEEEEEEET
T ss_pred ccccceEEccCCc---EEEEEccCCCCeEEEEECCCCceeeeecCCC------------------------EEEEEecCC
Confidence 1223467888877 4443 3445668888998888877775421 2222232 2
Q ss_pred CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccc--cCCC
Q 000454 405 TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW--FCHD 482 (1491)
Q Consensus 405 ~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~--~~~~ 482 (1491)
.-|.+-|.||.+.-..+... ++.... ++ -.|.++. .+.+.... ....
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~--------Gk~~~~---~t-----~~F~~~~---------------dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDAD--------GKEAQK---ST-----KVFDPDD---------------DPLFEHPAYSRDGG 196 (342)
T ss_dssp TEEEEEETTSCEEEEEETST--------SSEEEE---EE-----EESSTTT---------------S-B-S--EEETTTT
T ss_pred CceEEEecCCceEEEEECCC--------CCEeEe---ec-----cccCCCC---------------cccccccceECCCC
Confidence 45777778888888777531 111111 00 1222211 01111110 1124
Q ss_pred eEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccc
Q 000454 483 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC 562 (1491)
Q Consensus 483 ~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG 562 (1491)
.++-.+..|.|+-.|+..... .+...+.+.... ...-.-.+++-.-+++++....|++.-..|
T Consensus 197 ~~~F~Sy~G~v~~~dlsg~~~-----~~~~~~~~~t~~------------e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g 259 (342)
T PF06433_consen 197 RLYFVSYEGNVYSADLSGDSA-----KFGKPWSLLTDA------------EKADGWRPGGWQLIAYHAASGRLYVLMHQG 259 (342)
T ss_dssp EEEEEBTTSEEEEEEETTSSE-----EEEEEEESS-HH------------HHHTTEEE-SSS-EEEETTTTEEEEEEEE-
T ss_pred eEEEEecCCEEEEEeccCCcc-----cccCcccccCcc------------ccccCcCCcceeeeeeccccCeEEEEecCC
Confidence 566678888888888775331 111111110000 000000123344578887666665532211
Q ss_pred ----------eEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEE-eCCCcEEEEeCCCCceEEEEee
Q 000454 563 ----------RICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA-GYDGKTIVWDIWEGIPIRIYEI 623 (1491)
Q Consensus 563 ----------~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSg-S~DGtIrIWDl~tGk~l~~l~~ 623 (1491)
.|.+||+.+++.+..+.. ..++.+|+++.++.-+|++. ..++.|.|||..+|+.++.+..
T Consensus 260 ~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 260 GEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp -TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 388999999999998874 23477899998666566544 5689999999999999998873
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00065 Score=79.54 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=76.8
Q ss_pred EEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCC
Q 000454 309 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1491)
Q Consensus 309 IrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~ 388 (1491)
|++.+..+.+....+.+|...|..++|+|.... ++..++.+..|.|.|+++..++..+..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~G--Ll~~asl~nkiki~dlet~~~vssy~a------------------ 234 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEG--LLGLASLGNKIKIMDLETSCVVSSYIA------------------ 234 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccc--eeeeeccCceEEEEecccceeeeheec------------------
Confidence 677777777777788889999999999998753 688899999999999998877666532
Q ss_pred CCCCcceEEEEECCCC-CEEEEecCCceEEEEeCCCC
Q 000454 389 GPQSHQIFCCAFNANG-TVFVTGSSDTLARVWNACKP 424 (1491)
Q Consensus 389 ~~h~~~V~slafSPDG-~~LasGs~DG~IrVWDl~t~ 424 (1491)
...+++++|.-|. ++|.+|...|.|.|||++..
T Consensus 235 ---~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 235 ---YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ---cCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 3679999998865 57888889999999999854
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0048 Score=76.99 Aligned_cols=117 Identities=23% Similarity=0.255 Sum_probs=92.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCce
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS-CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~t-L~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i 320 (1491)
|...|.--+++..+++|+.|+.-|.|.+|+-.++..... ..+..+.+..+.++++..++|+|+..|.|.|+-+..+.+-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 455666677888899999999999999999887765443 2235566777788999999999999999999988764321
Q ss_pred e-----ee-ccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCC
Q 000454 321 S-----VL-RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1491)
Q Consensus 321 ~-----~L-~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~t 361 (1491)
. .+ +.|...|++++|++++. .|++|...|.|.+-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~---k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGM---KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEeccccc---EEeecCCCceEEEEEech
Confidence 1 11 24778999999999998 899999999999988776
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.011 Score=69.76 Aligned_cols=276 Identities=13% Similarity=0.117 Sum_probs=158.4
Q ss_pred CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEe----------CCCcEEEEccCCCCccceeecCCCCCc
Q 000454 307 CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS----------DDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1491)
Q Consensus 307 GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS----------~DGtVrIWDl~tg~~~~~i~~~~~~~~ 376 (1491)
+.|.|+|..+++.+..+.. +..-.+..+|+++ .+++++ ..-.|.+||..+-.....+.+|.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk---~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGK---TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSS---EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCC---EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 4799999988887776652 3344577899987 444432 334699999999888887776542111
Q ss_pred ccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec--CCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS--SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 377 ~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs--~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
.. ......++++.||+++++.. --..|.|.|+.. .+.+..+.- . . |....|.
T Consensus 92 ~~-------------~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~---------~kvv~ei~~-P-G--C~~iyP~ 145 (342)
T PF06433_consen 92 QV-------------VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAA---------KKVVGEIDT-P-G--CWLIYPS 145 (342)
T ss_dssp -B-------------S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTT---------TEEEEEEEG-T-S--EEEEEEE
T ss_pred ee-------------cccccceEEccCCcEEEEEccCCCCeEEEEECCC---------CceeeeecC-C-C--EEEEEec
Confidence 10 11233467888888777643 345677777754 222222221 1 1 2222232
Q ss_pred ccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCce
Q 000454 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534 (1491)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 534 (1491)
+ +..|.+.+.||.+....+...-.... .-..
T Consensus 146 ~-------------------------~~~F~~lC~DGsl~~v~Ld~~Gk~~~--~~t~---------------------- 176 (342)
T PF06433_consen 146 G-------------------------NRGFSMLCGDGSLLTVTLDADGKEAQ--KSTK---------------------- 176 (342)
T ss_dssp E-------------------------TTEEEEEETTSCEEEEEETSTSSEEE--EEEE----------------------
T ss_pred C-------------------------CCceEEEecCCceEEEEECCCCCEeE--eecc----------------------
Confidence 2 35788999999999888874221110 0000
Q ss_pred eccCCCC-CeeEEEEcCCCCEEEEEeccceEEEEECCCCce--EEEEeCC----------CCCeEEEEEecCCCcEEEEE
Q 000454 535 RILPTPR-GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL--VHSLTGH----------TESTYVLDVHPFNPRIAMSA 601 (1491)
Q Consensus 535 ~l~~h~~-~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkl--l~tL~gH----------s~~VtsLafSPdd~~lLaSg 601 (1491)
.+..... .+..-+++..+..++.-+.+|.|+-.|+..... ...+.-- .+.-.-+++++..+++++.-
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 0111111 122334555555555577888888888765432 2222111 11234577887555554432
Q ss_pred e--CCC-------cEEEEeCCCCceEEEEeeCCcceEEEEEcCCCC-EEEEE-eCCCcEEEEECCCCcccccc
Q 000454 602 G--YDG-------KTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGA-SIILS-DDVGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 602 S--~DG-------tIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~-~LAsg-s~DG~I~IWdl~tG~~~~~~ 663 (1491)
- .+| .|.++|+.+++.+..+... .++.+|..+.|.+ +|++. ..++.|.|||..+|+.+...
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 1 122 4788899999999999843 4687999999887 55444 45799999999999876643
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=82.76 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=103.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC-----CCEEEEEECCCeEEEEECC--CCCceeeeccC
Q 000454 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSN-----NALVASASNDCIIRVWRLP--DGLPISVLRGH 326 (1491)
Q Consensus 254 DG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPD-----G~lLASGS~DGtIrVWDl~--tgk~i~~L~gH 326 (1491)
+|.++||||.||+|.|-.+-+.+...++. ...++.+|+++|+ .+.+++|+.-| +.++.-. ..+.-..+..-
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence 59999999999999999999988877765 4578999999997 56889999888 7776421 11111245566
Q ss_pred CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCE
Q 000454 327 TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV 406 (1491)
Q Consensus 327 s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~ 406 (1491)
.++|.++.|..+ ++|-++.+| |+|||+.+.+.+..+..+.. . .........+.|.++.+
T Consensus 160 eG~I~~i~W~g~-----lIAWand~G-v~vyd~~~~~~l~~i~~p~~--~------------~R~e~fpphl~W~~~~~- 218 (846)
T KOG2066|consen 160 EGPIHSIKWRGN-----LIAWANDDG-VKVYDTPTRQRLTNIPPPSQ--S------------VRPELFPPHLHWQDEDR- 218 (846)
T ss_pred ccceEEEEecCc-----EEEEecCCC-cEEEeccccceeeccCCCCC--C------------CCcccCCCceEecCCCe-
Confidence 799999999875 788888887 89999998876665533221 0 11122234577876654
Q ss_pred EEEecCCceEEEEeCC
Q 000454 407 FVTGSSDTLARVWNAC 422 (1491)
Q Consensus 407 LasGs~DG~IrVWDl~ 422 (1491)
|+.|= ..+|+|..++
T Consensus 219 LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 219 LVIGW-GDSVKICSIK 233 (846)
T ss_pred EEEec-CCeEEEEEEe
Confidence 44443 3467787775
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.018 Score=72.74 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=70.2
Q ss_pred EEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEE-----------------EeCCCcEEEEeCCCCc
Q 000454 554 FVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS-----------------AGYDGKTIVWDIWEGI 616 (1491)
Q Consensus 554 ~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaS-----------------gS~DGtIrIWDl~tGk 616 (1491)
.+++++.+|.++.+|..+|+.+....... ..++..| +.+++. ...+|.|.-.|+.+|+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 67788899999999999999987654211 1233333 222221 1246889999999999
Q ss_pred eEEEEeeCC--------cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCccccc
Q 000454 617 PIRIYEISR--------FRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKD 662 (1491)
Q Consensus 617 ~l~~l~~h~--------~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~ 662 (1491)
.+....... .+...-...-.+.+|++++.+|.|+.+|..+|+.+-.
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeE
Confidence 998887441 1111111123567889999999999999999987543
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0048 Score=78.28 Aligned_cols=82 Identities=11% Similarity=0.021 Sum_probs=57.9
Q ss_pred CCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCce-EEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 000454 539 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL-VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 617 (1491)
Q Consensus 539 h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkl-l~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~ 617 (1491)
...+|+.+++..+++.++.+..-..|.+|.+....+ +..+..|...+.|..|++..+.+++ | .+..|.+|+.....+
T Consensus 170 ~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIc-a-~~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 170 GKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFIC-A-GSEFLYFYDSDGRGP 247 (933)
T ss_pred CCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEE-e-cCceEEEEcCCCcce
Confidence 345789999999988744444556789999874442 4557888889999999984444553 3 355799999976666
Q ss_pred EEEEe
Q 000454 618 IRIYE 622 (1491)
Q Consensus 618 l~~l~ 622 (1491)
...|.
T Consensus 248 cfaf~ 252 (933)
T KOG2114|consen 248 CFAFE 252 (933)
T ss_pred eeeec
Confidence 66665
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.039 Score=67.68 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=66.3
Q ss_pred eeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEE-EEEecCC-----------------C
Q 000454 534 QRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYV-LDVHPFN-----------------P 595 (1491)
Q Consensus 534 ~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~Vts-LafSPdd-----------------~ 595 (1491)
..+......+.+++.+|++++.|+...-|.|.++|+.++..++.++|..+.-.. +...... -
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 334455667899999999999999888899999999999999988887654211 1111101 1
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEeeC
Q 000454 596 RIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1491)
Q Consensus 596 ~lLaSgS~DGtIrIWDl~tGk~l~~l~~h 624 (1491)
.+++-+-.-|.|.||.+.+|..+..+...
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 24445667899999999999888877643
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.033 Score=69.09 Aligned_cols=114 Identities=15% Similarity=0.242 Sum_probs=79.0
Q ss_pred CCeeEEEEcC-CCCEEEEE----eccce----EEEEECCCCceEE--EE-eCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 000454 541 RGVNMIVWSL-DNRFVLAA----IMDCR----ICVWNAADGSLVH--SL-TGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608 (1491)
Q Consensus 541 ~~VtsVafSP-DG~~LaSG----s~DG~----IrIWDl~tgkll~--tL-~gHs~~VtsLafSPdd~~lLaSgS~DGtIr 608 (1491)
....++.||. +...+.+. +.+|. .++|+....+... .. -.....|.+.+++| +...|+.|+.||.|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEE
Confidence 3345666766 33334432 22332 4567765544322 11 24667899999999 566667899999999
Q ss_pred EEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 000454 609 VWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 609 IWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
+||...+... +.......+.++|+|+|.++++|+..|.|.+||++-+
T Consensus 285 LyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999766433 3334556788999999999999999999999999765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0027 Score=79.52 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=85.9
Q ss_pred EEEEcCCCCEEEEEe----CCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeee
Q 000454 248 CAIFDRSGRYVITGS----DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL 323 (1491)
Q Consensus 248 ~VaFSpDG~~LATGS----~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L 323 (1491)
-..|+|...++|.++ ..|.|.||- .+|++..... ..-.+++++|+|..-.||.|=.-|.+.||...+.+.-...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~ 97 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV 97 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence 345788777777775 357888884 5666443322 1223567999999889999988899999998877777777
Q ss_pred ccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccC
Q 000454 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360 (1491)
Q Consensus 324 ~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~ 360 (1491)
..|..+|..+.|+++|. .|+++..-|.|.+|...
T Consensus 98 ~th~a~i~~l~wS~~G~---~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGT---VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCCCCceeEEecCCCC---eEEEcCCCceeEEEEee
Confidence 78999999999999998 99999999999999775
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.086 Score=59.32 Aligned_cols=106 Identities=11% Similarity=0.025 Sum_probs=75.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEE
Q 000454 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAI 333 (1491)
Q Consensus 254 DG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsL 333 (1491)
-|++++.|+..|.+.+.+..+|.....+..-..--......+++.+|..|+.|++....|..+..++...+...+...+-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 47789999999999999999998777665432222233456789999999999999999999988888776544444444
Q ss_pred EecCCCCceEEEEEEeCCCcEEEEccCCC
Q 000454 334 AFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1491)
Q Consensus 334 aFSPdg~s~~~LaSgS~DGtVrIWDl~tg 362 (1491)
+..|-.. .|+.+...|.|.--.....
T Consensus 142 ~i~~g~~---sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 142 VIAPGDG---SLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred eecCCCc---eEEEEeccceEEEEccCCC
Confidence 5555322 4566666666655544433
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.071 Score=65.99 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=64.2
Q ss_pred CCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH-TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH-s~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l 618 (1491)
.+++..|++||+|++||.-..+|.+.|....-.+.+..+... ......|.|+- .|..+..|. ..+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG----------~dav~l~~~----~~l 281 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG----------NDAVVLSWE----DEL 281 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC----------CCcEEEEeC----CEE
Confidence 457899999999999999999999999987666666655533 23445666654 343344442 112
Q ss_pred EEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCccccccc
Q 000454 619 RIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAK 664 (1491)
Q Consensus 619 ~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~ 664 (1491)
..+..... .+.|.-++..++..-.|| |+|+.-...+.+...+
T Consensus 282 ~lvg~~~~---~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp 323 (410)
T PF04841_consen 282 LLVGPDGD---SISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVP 323 (410)
T ss_pred EEECCCCC---ceEEeccCceEEeccCCc-eEEEeCCceEEEEECC
Confidence 11111111 134444555555555566 7777766665555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.01 Score=71.82 Aligned_cols=306 Identities=13% Similarity=0.105 Sum_probs=158.5
Q ss_pred cCCCCEEEEEE---------CCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCc
Q 000454 294 SSNNALVASAS---------NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1491)
Q Consensus 294 SPDG~lLASGS---------~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~ 364 (1491)
|||+++++... ..+.+.|||+.+++....... ...+....|+|+++ .|+... ++.|.++++.++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~---~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGK---YIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSST---EEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCC---eeEEEe-cCceEEEECCCCCe
Confidence 67888777642 246799999998765544433 67788999999987 555554 57799999887743
Q ss_pred cceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCC-ceEEEEeCCCCCCCCCCCCCceeeeecCCC
Q 000454 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD-TLARVWNACKPNTDDSDQPNHEIDVLSGHE 443 (1491)
Q Consensus 365 ~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~D-G~IrVWDl~t~~~~~s~~~~~~i~~l~gH~ 443 (1491)
.+.. .........|........ .--..-..+-|||||+.||....| ..|..+.+-. .....
T Consensus 76 ~~lT-~dg~~~i~nG~~dwvyeE--Ev~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~---------------~~~~~ 137 (353)
T PF00930_consen 76 TQLT-TDGEPGIYNGVPDWVYEE--EVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD---------------YSPPD 137 (353)
T ss_dssp EESE-S--TTTEEESB--HHHHH--HTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE---------------ESSST
T ss_pred EEec-cccceeEEcCccceeccc--cccccccceEECCCCCEEEEEEECCcCCceEEeec---------------cCCcc
Confidence 3222 211111111111000000 001123568899999999876543 3333333210 01110
Q ss_pred ---CCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCC--eEEEEecCCCCCCccccccccccccCC
Q 000454 444 ---NDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG--SAIIWIPRSRRSHPKAARWTQAYHLKV 518 (1491)
Q Consensus 444 ---~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DG--tIrIWDl~s~k~~~~~~~~~~~~~l~~ 518 (1491)
..+..+.+-.-| ...- .+.|+|+.+++....
T Consensus 138 ~~yp~~~~~~YPk~G--------------------------------~~np~v~l~v~~~~~~~~~~~------------ 173 (353)
T PF00930_consen 138 SQYPEVESIRYPKAG--------------------------------DPNPRVSLFVVDLASGKTTEL------------ 173 (353)
T ss_dssp ESS-EEEEEE--BTT--------------------------------S---EEEEEEEESSSTCCCEE------------
T ss_pred ccCCcccccccCCCC--------------------------------CcCCceEEEEEECCCCcEEEe------------
Confidence 122223221111 1111 345677765442100
Q ss_pred CCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc-----ceEEEEECCCCceEEEEeC-CCCC---eEEEE
Q 000454 519 PPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD-----CRICVWNAADGSLVHSLTG-HTES---TYVLD 589 (1491)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D-----G~IrIWDl~tgkll~tL~g-Hs~~---VtsLa 589 (1491)
............+..+.|++++..|++...+ ..+.++|..++.+...+.. ..+. ...+.
T Consensus 174 ------------~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~ 241 (353)
T PF00930_consen 174 ------------DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPH 241 (353)
T ss_dssp ---------------HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEE
T ss_pred ------------eeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccc
Confidence 0000112234568899999999955543322 3578889888766444322 2222 23455
Q ss_pred Ee-cCCCcEEEEEeCCCcEE--EEeCCCCceEEEEeeCCcceEE-EEEcCCCCEEEE-EeCC----CcEEEEECC-CCcc
Q 000454 590 VH-PFNPRIAMSAGYDGKTI--VWDIWEGIPIRIYEISRFRLVD-GKFSPDGASIIL-SDDV----GQLYILNTG-QGES 659 (1491)
Q Consensus 590 fS-Pdd~~lLaSgS~DGtIr--IWDl~tGk~l~~l~~h~~~Vts-lafSPDG~~LAs-gs~D----G~I~IWdl~-tG~~ 659 (1491)
|. +++..+|.....||.-. +.+...+. ...+..+...|.. +.|+++++.|.. +..+ -.|+..++. .++.
T Consensus 242 ~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~ 320 (353)
T PF00930_consen 242 FLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP 320 (353)
T ss_dssp E-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE
T ss_pred cccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe
Confidence 55 66777777777888554 45554444 4455556667755 688999887764 4432 366667777 5543
Q ss_pred ccc----cc-ceeeecCCCcceEEc
Q 000454 660 QKD----AK-YDQFFLGDYRPLVQD 679 (1491)
Q Consensus 660 ~~~----~~-~~~~fs~D~r~La~d 679 (1491)
... .. ....|+++++.++..
T Consensus 321 ~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 321 KCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred EeccCCCCCceEEEECCCCCEEEEE
Confidence 221 11 367788887776543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.13 Score=62.14 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=46.8
Q ss_pred ECCCCeEEEEEecCCCCeE-----EEEEcCCCCEEEEEEC-C--CeEEEEECCCCCceeeeccCCCceEEEEecCCCCce
Q 000454 271 SMETAYCLASCRGHEGDIT-----DLAVSSNNALVASASN-D--CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSV 342 (1491)
Q Consensus 271 Dl~Tg~~l~tL~gH~~~Vt-----sLafSPDG~lLASGS~-D--GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~ 342 (1491)
|..||..+..|..+...-. .=+|.+||+.|+.++. | ..+.+.|+.+++..+.-.+-........++|+++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~-- 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDR-- 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSS--
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCC--
Confidence 6678877777764433222 2357788976655554 4 4577778888876655443323333567778876
Q ss_pred EEEEEEeCCCcEEEEccCCCCcccee
Q 000454 343 YQLLSSSDDGTCRIWDARYSQFSPRI 368 (1491)
Q Consensus 343 ~~LaSgS~DGtVrIWDl~tg~~~~~i 368 (1491)
.|+-......|+-.|+.+.+....+
T Consensus 94 -~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 94 -ALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -EEEEEETTTEEEEEETTT--EEEEE
T ss_pred -eEEEEECCCeEEEEECCcCcEEEEE
Confidence 5555555567888899887754443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.015 Score=74.02 Aligned_cols=178 Identities=15% Similarity=0.206 Sum_probs=117.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEEECCC-----eEEEEECCCC-
Q 000454 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD-ITDLAVSSNNALVASASNDC-----IIRVWRLPDG- 317 (1491)
Q Consensus 245 ~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~-VtsLafSPDG~lLASGS~DG-----tIrVWDl~tg- 317 (1491)
.|+| |++.+..+|.|+.+|.|.+.+-. .+.++.++.+... |..+-...+..+|++.+.|+ .|+||+++.-
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 5555 67888899999999988877642 4455777777777 55544443446888887764 4899998642
Q ss_pred -----Ccee--eecc-----CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCC--CCccceeecCCCCCcccCCCCC
Q 000454 318 -----LPIS--VLRG-----HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY--SQFSPRIYIPRPSDAVAGRNMA 383 (1491)
Q Consensus 318 -----k~i~--~L~g-----Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~t--g~~~~~i~~~~~~~~~~g~~~~ 383 (1491)
.++. .+.+ ...++.+++.+.+-. .+|+|-.+|.|.++.-+- ..-..
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~---~Iv~Gf~nG~V~~~~GDi~RDrgsr----------------- 163 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK---TIVCGFTNGLVICYKGDILRDRGSR----------------- 163 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc---EEEEEecCcEEEEEcCcchhccccc-----------------
Confidence 2231 1112 356788999998865 899999999999884321 11111
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 384 PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 384 ~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
.........+|+.++|..++..++....-..|.+|.+.. ++ .....+..|...+.|..+++.
T Consensus 164 -~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-------r~-p~~~~ld~~G~~lnCss~~~~ 225 (933)
T KOG2114|consen 164 -QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-------RT-PSLKVLDNNGISLNCSSFSDG 225 (933)
T ss_pred -eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecC-------CC-cceeeeccCCccceeeecCCC
Confidence 111233577899999999988733333446788998852 11 234456777778888888765
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00015 Score=88.70 Aligned_cols=198 Identities=13% Similarity=0.177 Sum_probs=127.2
Q ss_pred CEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcC-CCCEEEEEE----CCCeEEEEECC
Q 000454 245 AVYCAIFDRS--GRYVITGSDDRLVKIWSMETAYC--LASCRGHEGDITDLAVSS-NNALVASAS----NDCIIRVWRLP 315 (1491)
Q Consensus 245 ~Vt~VaFSpD--G~~LATGS~DGtIrIWDl~Tg~~--l~tL~gH~~~VtsLafSP-DG~lLASGS----~DGtIrVWDl~ 315 (1491)
.+.|+++.-+ ..+++.|..+|.|-+-.+....- .....+|....++++|++ |.+.||+|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 4556665443 34788888999998887754321 233457888999999998 566787773 25679999998
Q ss_pred CC--Cce--eeecc-CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCC
Q 000454 316 DG--LPI--SVLRG-HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1491)
Q Consensus 316 tg--k~i--~~L~g-Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~ 390 (1491)
++ .+. ..+.+ -.....+++|..+.+ ++++|.....|.++|++........ -
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~k---lvlaGm~sr~~~ifdlRqs~~~~~s---------------------v 193 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTK---LVLAGMTSRSVHIFDLRQSLDSVSS---------------------V 193 (783)
T ss_pred cccCCCccccccccccccCccccccccCcc---hhhcccccchhhhhhhhhhhhhhhh---------------------h
Confidence 77 222 12222 334556888887665 8888888889999999833211110 0
Q ss_pred CCcceEEEEECC-CCCEEEEecCCceEEEEeC-CCCCCCCCCCCCceeeeecCC----CCCceEEEEccCcccccccccc
Q 000454 391 QSHQIFCCAFNA-NGTVFVTGSSDTLARVWNA-CKPNTDDSDQPNHEIDVLSGH----ENDVNYVQFSGCAVASRFSLAD 464 (1491)
Q Consensus 391 h~~~V~slafSP-DG~~LasGs~DG~IrVWDl-~t~~~~~s~~~~~~i~~l~gH----~~~V~sVafSpdg~as~~s~~~ 464 (1491)
....+..+...| .+.++++-. ||.|.+||. ++- ...+..+... ...+..++|+|..
T Consensus 194 nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni--------enpl~~i~~~~N~~~~~l~~~aycPtr--------- 255 (783)
T KOG1008|consen 194 NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI--------ENPLQIILRNENKKPKQLFALAYCPTR--------- 255 (783)
T ss_pred hhhhcccceecCCCCCceeccc-cCceeeccchhhh--------ccHHHHHhhCCCCcccceeeEEeccCC---------
Confidence 233466677778 677777665 999999994 221 1112222111 2348899999864
Q ss_pred CCCCCCCccccccccCCCeEEEEeC-CCeEEEEecCC
Q 000454 465 SSKEDSTPKFKNSWFCHDNIVTCSR-DGSAIIWIPRS 500 (1491)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~LaSgS~-DGtIrIWDl~s 500 (1491)
...+++... .++|+++|+..
T Consensus 256 ----------------tglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 256 ----------------TGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ----------------cchhhhhccCcceEEEecccc
Confidence 235565555 47899998874
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0028 Score=78.08 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=64.4
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 000454 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD 316 (1491)
Q Consensus 241 GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~t 316 (1491)
.+...|.|++++|+...|+.|+.||.|++||..++....+ ...-.++.++|+|+|.++++|+..|.|.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 4678999999999999999999999999999987744433 3456689999999999999999999999999853
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0037 Score=78.31 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=63.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000454 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 246 Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~ 315 (1491)
+++++|+|..-.||.|-.-|.+.+|...+.+.......|..+|.-+.||++|+.|+++..=|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5679999999999999999999999998877766667899999999999999999999999999999875
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.041 Score=67.51 Aligned_cols=306 Identities=13% Similarity=0.109 Sum_probs=143.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--------
Q 000454 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPD-------- 316 (1491)
Q Consensus 245 ~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~t-------- 316 (1491)
.|++|.|+++..-||.|...|.|.||.+...+... ..-...-..+.|.+- ...++.-.|-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999999999999999999999876433221 000111111111110 00111122223321
Q ss_pred C-CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcce
Q 000454 317 G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1491)
Q Consensus 317 g-k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V 395 (1491)
| .+...+....+.|++++.+.-| +++.|..+|.+.|.|++....+....+.. ..........|
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG----Fvaigy~~G~l~viD~RGPavI~~~~i~~------------~~~~~~~~~~v 138 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG----FVAIGYESGSLVVIDLRGPAVIYNENIRE------------SFLSKSSSSYV 138 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS----EEEEEETTSEEEEEETTTTEEEEEEEGGG--------------T-SS----E
T ss_pred ccCchhheeccCCcEeEEecCCCc----EEEEEecCCcEEEEECCCCeEEeeccccc------------cccccccccCe
Confidence 1 2344555568999999998766 89999999999999999887666543311 01112245567
Q ss_pred EEEEECC-----CC---CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCC
Q 000454 396 FCCAFNA-----NG---TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1491)
Q Consensus 396 ~slafSP-----DG---~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1491)
+++.|.. |+ -.+++|+..|.+.+|.+--... . ............+.+.|..
T Consensus 139 t~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~-g-~f~v~~~~~~~~~~~~i~~------------------- 197 (395)
T PF08596_consen 139 TSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSN-G-RFSVQFAGATTNHDSPILS------------------- 197 (395)
T ss_dssp EEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GG-G--EEEEEEEEE--SS----E-------------------
T ss_pred eEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCC-C-ceEEEEeeccccCCCceEE-------------------
Confidence 7787753 33 4788899999999998731000 0 0000000000011111111
Q ss_pred CCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000454 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1491)
Q Consensus 468 ~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1491)
|...+..++........- ... ......+
T Consensus 198 -------------------------I~~i~~~~G~~a~At~~~----------------------~~~-l~~g~~i---- 225 (395)
T PF08596_consen 198 -------------------------IIPINADTGESALATISA----------------------MQG-LSKGISI---- 225 (395)
T ss_dssp -------------------------EEEEETTT--B-B-BHHH----------------------HHG-GGGT-------
T ss_pred -------------------------EEEEECCCCCcccCchhH----------------------hhc-cccCCCc----
Confidence 112222221110000000 000 0000011
Q ss_pred EcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEec----CCCcEEEEEeCCCcEEEEeCCCCceEEEEee
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP----FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI 623 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSP----dd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~ 623 (1491)
..+++.+.+..|+|+...+.+..+......-....+.+-+ ..+..|++-..+|.|+++.+-.-+.+..+..
T Consensus 226 -----~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 226 -----PGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp ------EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred -----CcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 1233344567899999988887776552222233344421 2456777888999999999999998888875
Q ss_pred CC----cceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 624 SR----FRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 624 h~----~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
.. ..+....|+++|..++..+. ..+.+|.
T Consensus 301 ~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~s 333 (395)
T PF08596_consen 301 PPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFS 333 (395)
T ss_dssp SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEE
T ss_pred CCccccccccccEECCCCCEEEEeCc-ccEEEEE
Confidence 32 13445678899987766644 3444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.73 Score=60.32 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=91.9
Q ss_pred eeEEEEcCC-CCEEEEEec----------cceEEEEECCCCceEEEEeCC--CCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 000454 543 VNMIVWSLD-NRFVLAAIM----------DCRICVWNAADGSLVHSLTGH--TESTYVLDVHPFNPRIAMSAGYDGKTIV 609 (1491)
Q Consensus 543 VtsVafSPD-G~~LaSGs~----------DG~IrIWDl~tgkll~tL~gH--s~~VtsLafSPdd~~lLaSgS~DGtIrI 609 (1491)
+.++.|..| +.++++|+. .|.|.||.+..+..+.....+ .+.+.++.. ++++++ ++-...|++
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~--fngkll--A~In~~vrL 852 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE--FNGKLL--AGINQSVRL 852 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh--hCCeEE--EecCcEEEE
Confidence 455568777 778888762 578888888774444433322 344555443 467887 455678999
Q ss_pred EeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--ccc-------cccceeeecCCCcceEEcc
Q 000454 610 WDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE--SQK-------DAKYDQFFLGDYRPLVQDT 680 (1491)
Q Consensus 610 WDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~--~~~-------~~~~~~~fs~D~r~La~d~ 680 (1491)
|++.+++.++.-..+..++..+...-.|..+++|+--+.|.+......+ ... .......+..+-..+..+.
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~ 932 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAEN 932 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecc
Confidence 9999998887777788899999999999999999998888776654333 321 1123334444444455555
Q ss_pred CCCE
Q 000454 681 YGNV 684 (1491)
Q Consensus 681 ~G~v 684 (1491)
+|.+
T Consensus 933 ~gNl 936 (1096)
T KOG1897|consen 933 SGNL 936 (1096)
T ss_pred cccE
Confidence 5554
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.41 Score=58.74 Aligned_cols=286 Identities=14% Similarity=0.073 Sum_probs=171.8
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEE
Q 000454 267 VKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS-NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 345 (1491)
Q Consensus 267 IrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS-~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~L 345 (1491)
+.+++..+......+.-+. ....+.+.+++..+.... ....+.+.+............-...-..+++++.+. ..+
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~--~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGN--KVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCC--eEE
Confidence 6677776666666655333 567778888885444332 222455555442111111111113345778888876 245
Q ss_pred EEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC---CceEEEEeCC
Q 000454 346 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS---DTLARVWNAC 422 (1491)
Q Consensus 346 aSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~---DG~IrVWDl~ 422 (1491)
++...+..|.+.|..+......+.. ......+++++++..+.++.. ++.+.+.|..
T Consensus 90 v~~~~~~~v~vid~~~~~~~~~~~v---------------------G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~ 148 (381)
T COG3391 90 VTTGDSNTVSVIDTATNTVLGSIPV---------------------GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA 148 (381)
T ss_pred EecCCCCeEEEEcCcccceeeEeee---------------------ccCCceEEECCCCCEEEEEecccCCceEEEEeCC
Confidence 5555678899999776665554422 225678999999987776655 6788888876
Q ss_pred CCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCC
Q 000454 423 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1491)
Q Consensus 423 t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k 502 (1491)
+. ..+.....-..+ ..+++.|++ ...+++-..++.|.+.|.....
T Consensus 149 t~---------~~~~~~~vG~~P-~~~a~~p~g-------------------------~~vyv~~~~~~~v~vi~~~~~~ 193 (381)
T COG3391 149 TN---------KVTATIPVGNTP-TGVAVDPDG-------------------------NKVYVTNSDDNTVSVIDTSGNS 193 (381)
T ss_pred CC---------eEEEEEecCCCc-ceEEECCCC-------------------------CeEEEEecCCCeEEEEeCCCcc
Confidence 53 233332222233 788888886 2245555688999999876532
Q ss_pred CCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEecc---ceEEEEECCCCceEEE-E
Q 000454 503 SHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---CRICVWNAADGSLVHS-L 578 (1491)
Q Consensus 503 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~D---G~IrIWDl~tgkll~t-L 578 (1491)
... ...............++++|+|.++.+.... +.+.+.|..++..... +
T Consensus 194 v~~-------------------------~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 194 VVR-------------------------GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred eec-------------------------cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 110 0000011122334568999999987776544 5899999988877765 2
Q ss_pred eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCc---ceEEEEEcCC
Q 000454 579 TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF---RLVDGKFSPD 636 (1491)
Q Consensus 579 ~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~---~VtslafSPD 636 (1491)
..-......+.++|.+..+.+.-+..+.+.+-|..+......+..+.. .+..+++.+.
T Consensus 249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 221114567889995555554445568899999988887777654433 3444555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.054 Score=67.38 Aligned_cols=145 Identities=14% Similarity=0.104 Sum_probs=82.2
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC
Q 000454 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1491)
Q Consensus 239 L~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk 318 (1491)
+-...-....+.++|+|++++.+ .||.-.|+.....+.... +.-..++|.+.+ .+|+-...++|.|+.--+..
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccc
Confidence 33344557899999999999984 567788888555554433 234567898855 56666668889996432333
Q ss_pred ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEE
Q 000454 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1491)
Q Consensus 319 ~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sl 398 (1491)
....+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.+.++.+ ..|..+
T Consensus 101 ~~k~i~~-~~~~~~If~---G~---LL~~~~-~~~i~~yDw~~~~~i~~i~v----------------------~~vk~V 150 (443)
T PF04053_consen 101 VVKSIKL-PFSVEKIFG---GN---LLGVKS-SDFICFYDWETGKLIRRIDV----------------------SAVKYV 150 (443)
T ss_dssp TT------SS-EEEEE----SS---SEEEEE-TTEEEEE-TTT--EEEEESS-----------------------E-EEE
T ss_pred cceEEcC-CcccceEEc---Cc---EEEEEC-CCCEEEEEhhHcceeeEEec----------------------CCCcEE
Confidence 3233331 122333333 44 455544 44899999999998888732 248999
Q ss_pred EECCCCCEEEEecCCceEEEEeC
Q 000454 399 AFNANGTVFVTGSSDTLARVWNA 421 (1491)
Q Consensus 399 afSPDG~~LasGs~DG~IrVWDl 421 (1491)
.|+++|.++|..+.+ .+.|++.
T Consensus 151 ~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 151 IWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp EE-TTSSEEEEE-S--SEEEEEE
T ss_pred EEECCCCEEEEEeCC-eEEEEEe
Confidence 999999999988755 5667665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.14 Score=59.05 Aligned_cols=205 Identities=13% Similarity=0.125 Sum_probs=113.0
Q ss_pred CcceEEEEECCC-CCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCC-CCCceEEEEccCccccccccccCCCCC
Q 000454 392 SHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGH-ENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 392 ~~~V~slafSPD-G~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH-~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
...+..++|+|+ +.++++....+.|..++.. +..+..+.-. .+....|++..++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~----------G~vlr~i~l~g~~D~EgI~y~g~~-------------- 76 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD----------GKVLRRIPLDGFGDYEGITYLGNG-------------- 76 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT------------EEEEEE-SS-SSEEEEEE-STT--------------
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC----------CCEEEEEeCCCCCCceeEEEECCC--------------
Confidence 345999999997 4577777888888888763 2334333222 3566777776543
Q ss_pred CCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 549 (1491)
.++++--.++.+.++++........... ...+.+. ....++.++-.++|+
T Consensus 77 ------------~~vl~~Er~~~L~~~~~~~~~~~~~~~~-~~~~~l~-----------------~~~~~N~G~EGla~D 126 (248)
T PF06977_consen 77 ------------RYVLSEERDQRLYIFTIDDDTTSLDRAD-VQKISLG-----------------FPNKGNKGFEGLAYD 126 (248)
T ss_dssp ------------EEEEEETTTTEEEEEEE----TT--EEE-EEEEE--------------------S---SS--EEEEEE
T ss_pred ------------EEEEEEcCCCcEEEEEEeccccccchhh-ceEEecc-----------------cccCCCcceEEEEEc
Confidence 2344444589999988854221110000 0011111 012345678999999
Q ss_pred CCCCEEEEEeccceEEEEECCC---CceEEEE--------eCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000454 550 LDNRFVLAAIMDCRICVWNAAD---GSLVHSL--------TGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 550 PDG~~LaSGs~DG~IrIWDl~t---gkll~tL--------~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l 618 (1491)
+.+..|+++-...-..||.+.. ...+... ......+.+++++|..+.+++.......|.++| .+|+++
T Consensus 127 ~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~ 205 (248)
T PF06977_consen 127 PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVV 205 (248)
T ss_dssp TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EE
T ss_pred CCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEE
Confidence 9988888887766666666543 2222211 123345789999998888998888999999999 588888
Q ss_pred EEEeeCC---------cceEEEEEcCCCCEEEEEeCCCcEEEE
Q 000454 619 RIYEISR---------FRLVDGKFSPDGASIILSDDVGQLYIL 652 (1491)
Q Consensus 619 ~~l~~h~---------~~VtslafSPDG~~LAsgs~DG~I~IW 652 (1491)
..+.-.. ...-.|+|.++|++.+++ +-+.+++|
T Consensus 206 ~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 206 SSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred EEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 7776433 145689999999655554 55666655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.25 Score=63.14 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=38.4
Q ss_pred CcEEEEeCCCCceEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 000454 605 GKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1491)
Q Consensus 605 GtIrIWDl~tGk~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~ 661 (1491)
|.|.-||+.+|+.+..+.... +...-.+.-.|.++++++.+|.|+.+|..+|+.+-
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~-p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDF-PLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred eeEEEEeCCCCceeeEecCCC-CCCCcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 568888999998888776332 21111122355577778889999999999997654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0061 Score=76.12 Aligned_cols=156 Identities=14% Similarity=0.166 Sum_probs=105.0
Q ss_pred CCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEE-EeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS-LTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~t-L~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l 618 (1491)
...|.--+++..+++++.|+.-|.+++|+...+..... ..+-.+.+..+.+|+ ...++|.|+..|.|.|+-+..+.+-
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCC
Confidence 34455567788899999999999999999877765443 233445566667777 7788889999999999998765322
Q ss_pred EE-----E-eeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcccccccceeeecCCCcceEEccCCCEEEcccccc
Q 000454 619 RI-----Y-EISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLA 692 (1491)
Q Consensus 619 ~~-----l-~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~~~~~~~~~~fs~D~r~La~d~~G~vLde~tq~~ 692 (1491)
.. + ..|...|++++|++|+..|.+|+..|+|..-.+... .....+...-..-|+-.+-.|....+|-..+-+.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r 190 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTR 190 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechh-hhhccccceeeccCcceEEeecccceehHhhhhh
Confidence 11 1 125668999999999999999999999999888772 2222222223334444444454444443344443
Q ss_pred Ccccc
Q 000454 693 PHRRN 697 (1491)
Q Consensus 693 p~Lw~ 697 (1491)
-+|.+
T Consensus 191 ~~Lc~ 195 (726)
T KOG3621|consen 191 CILCQ 195 (726)
T ss_pred hheee
Confidence 34444
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.26 Score=57.14 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=86.0
Q ss_pred CCCCEEEEEeCCCeEEEEECC-CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeee--------
Q 000454 253 RSGRYVITGSDDRLVKIWSME-TAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL-------- 323 (1491)
Q Consensus 253 pDG~~LATGS~DGtIrIWDl~-Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L-------- 323 (1491)
..++.|+.|..+| |.++++. ......... ...|..|...++-+.|++-+ |+.|.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4678999999999 8999983 333333332 33499999999877777765 599999998765433311
Q ss_pred ------ccCCCceEEEE-ecCCCCceEEEEEEeCCCcEEEEccCCCC-----ccceeecCCCCCcccCCCCCCCCCCCCC
Q 000454 324 ------RGHTAAVTAIA-FSPRPGSVYQLLSSSDDGTCRIWDARYSQ-----FSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391 (1491)
Q Consensus 324 ------~gHs~~VtsLa-FSPdg~s~~~LaSgS~DGtVrIWDl~tg~-----~~~~i~~~~~~~~~~g~~~~~~~s~~~h 391 (1491)
......+...+ -..... ...|+ +.....|.+|.+.... ....+. -
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~---------------------l 137 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEG-SRRLC-VAVKKKILIYEWNDPRNSFSKLLKEIS---------------------L 137 (275)
T ss_pred ccccccccccCCeeEEeecccccc-ceEEE-EEECCEEEEEEEECCcccccceeEEEE---------------------c
Confidence 11223344444 112221 12444 4444588888876531 222222 2
Q ss_pred CcceEEEEECCCCCEEEEecCCceEEEEeCCCC
Q 000454 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKP 424 (1491)
Q Consensus 392 ~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~ 424 (1491)
...+.+++|. ++.|++|..++ ..+.|+.++
T Consensus 138 p~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~ 167 (275)
T PF00780_consen 138 PDPPSSIAFL--GNKICVGTSKG-FYLIDLNTG 167 (275)
T ss_pred CCCcEEEEEe--CCEEEEEeCCc-eEEEecCCC
Confidence 3568888888 56677776554 667888653
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.24 Score=59.77 Aligned_cols=108 Identities=14% Similarity=0.057 Sum_probs=57.1
Q ss_pred ccceeEEEEccCCCCEEE-----EEEcCCCCEEEEEeC-C--CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 000454 231 QKMQNIKRVRGHRNAVYC-----AIFDRSGRYVITGSD-D--RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVAS 302 (1491)
Q Consensus 231 ~t~k~v~tL~GH~~~Vt~-----VaFSpDG~~LATGS~-D--GtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLAS 302 (1491)
.++..|.+|..+.+.... =+|.+||+.|+.+++ | ..+.+.|+.+++..+.-.+-........++|+++.|+-
T Consensus 18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence 445555566544332222 356789977766655 4 46778889988776654433233335667888888877
Q ss_pred EECCCeEEEEECCCCCceeeeccCCCceEEEEecCC
Q 000454 303 ASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPR 338 (1491)
Q Consensus 303 GS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPd 338 (1491)
......|+-.|+.+.+....+......+-...|..+
T Consensus 98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n 133 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVAN 133 (386)
T ss_dssp EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-
T ss_pred EECCCeEEEEECCcCcEEEEEECCcccccccceeeC
Confidence 666678999999998876667666676766666533
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.065 Score=66.43 Aligned_cols=132 Identities=18% Similarity=0.109 Sum_probs=82.5
Q ss_pred eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE---CC-CeEEEEECCCCCceeeeccCCCceEEEEecCCCCc
Q 000454 266 LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS---ND-CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS 341 (1491)
Q Consensus 266 tIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS---~D-GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s 341 (1491)
.+.+=|.. |.....+..-...+..-+|+|++..++..+ .. ..|.++++.++.....+. ..+.-..-+|+||++
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~- 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS- 250 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC-
Confidence 44444444 555566665667788889999998766542 22 469999999887655554 344455679999997
Q ss_pred eEEEEEEeCCCcEE--EEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC-Cce--E
Q 000454 342 VYQLLSSSDDGTCR--IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTL--A 416 (1491)
Q Consensus 342 ~~~LaSgS~DGtVr--IWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~-DG~--I 416 (1491)
.++++...||... +.|+.++.... +.. ..+.-..=.|+|||+.|+..+. .|. |
T Consensus 251 -~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~--------------------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I 308 (425)
T COG0823 251 -KLAFSSSRDGSPDIYLMDLDGKNLPR-LTN--------------------GFGINTSPSWSPDGSKIVFTSDRGGRPQI 308 (425)
T ss_pred -EEEEEECCCCCccEEEEcCCCCccee-ccc--------------------CCccccCccCCCCCCEEEEEeCCCCCcce
Confidence 4666777777654 55776665222 210 1111124578999998877654 444 4
Q ss_pred EEEeCC
Q 000454 417 RVWNAC 422 (1491)
Q Consensus 417 rVWDl~ 422 (1491)
.++++.
T Consensus 309 ~~~~~~ 314 (425)
T COG0823 309 YLYDLE 314 (425)
T ss_pred EEECCC
Confidence 444543
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00051 Score=84.21 Aligned_cols=205 Identities=20% Similarity=0.312 Sum_probs=130.0
Q ss_pred CcceEEEEECCCC--CEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCC
Q 000454 392 SHQIFCCAFNANG--TVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 392 ~~~V~slafSPDG--~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~ 469 (1491)
...+.|+++.-+. ..+++|..+|.|.+-.++.... .......+|...+++++|.+-.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------Ss~E~tp~~ar~Ct~lAwneLD-------------- 114 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------SSAEVTPGYARPCTSLAWNELD-------------- 114 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccc-------ccceeccccccccccccccccc--------------
Confidence 3457788776544 4788999999999998865321 1234557788899999998742
Q ss_pred CCccccccccCCCeEEEE----eCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceecc-CCCCCee
Q 000454 470 STPKFKNSWFCHDNIVTC----SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL-PTPRGVN 544 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LaSg----S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~-~h~~~Vt 544 (1491)
.+.||.| -.|-.+.|||+.+.-.. | . ..+ .+. .......
T Consensus 115 -----------tn~LAagldkhrnds~~~Iwdi~s~ltv--------------P---k------e~~--~fs~~~l~gqn 158 (783)
T KOG1008|consen 115 -----------TNHLAAGLDKHRNDSSLKIWDINSLLTV--------------P---K------ESP--LFSSSTLDGQN 158 (783)
T ss_pred -----------HHHHHhhhhhhcccCCccceecccccCC--------------C---c------ccc--ccccccccCcc
Confidence 1345554 24667999999863210 0 0 000 000 1334456
Q ss_pred EEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC-CC-CceEEEEe
Q 000454 545 MIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI-WE-GIPIRIYE 622 (1491)
Q Consensus 545 sVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl-~t-Gk~l~~l~ 622 (1491)
+++|-.+.++|++|.....+.++|++.. +...-.-.+..+..+.+.|..+.++++ ..||.|.+||. .. ..++..+.
T Consensus 159 s~cwlrd~klvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs-~~dg~iAiwD~~rnienpl~~i~ 236 (783)
T KOG1008|consen 159 SVCWLRDTKLVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFCS-NSDGDIAIWDTYRNIENPLQIIL 236 (783)
T ss_pred ccccccCcchhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCCCceec-cccCceeeccchhhhccHHHHHh
Confidence 8999999999999999999999998621 111111123346677888877788854 45999999994 22 12333222
Q ss_pred eC----CcceEEEEEcCCC--CEEEEEeCCCcEEEEECC
Q 000454 623 IS----RFRLVDGKFSPDG--ASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 623 ~h----~~~VtslafSPDG--~~LAsgs~DG~I~IWdl~ 655 (1491)
.. ...+..++|+|.. ...+..-..++|+++++.
T Consensus 237 ~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 237 RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 11 1248899999964 333344556899999873
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0031 Score=47.57 Aligned_cols=39 Identities=31% Similarity=0.682 Sum_probs=35.4
Q ss_pred ceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWS 271 (1491)
Q Consensus 233 ~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWD 271 (1491)
.+++..+.+|...|+++.|.+++.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 356778889999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.089 Score=65.23 Aligned_cols=207 Identities=16% Similarity=0.093 Sum_probs=113.1
Q ss_pred eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCC-CcEEEEccCCCCccceeecCCCCCcccCCCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD-GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSS 386 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D-GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~ 386 (1491)
.+.+-|.. |.....+..-...+..-+|+|++....++..-... ..+.++++.++.......
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----------------- 235 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----------------- 235 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------
Confidence 34444433 55555565556677888999998744333333333 468999999887554442
Q ss_pred CCCCCCcceEEEEECCCCCEEEEe-cCCce--EEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccc
Q 000454 387 SAGPQSHQIFCCAFNANGTVFVTG-SSDTL--ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLA 463 (1491)
Q Consensus 387 s~~~h~~~V~slafSPDG~~LasG-s~DG~--IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~ 463 (1491)
..+.-..-+|+|||+.|+.. ..||. |.++|+.... +..+..-.+.-..-.|+|+|
T Consensus 236 ----~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~----------~~~Lt~~~gi~~~Ps~spdG-------- 293 (425)
T COG0823 236 ----FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN----------LPRLTNGFGINTSPSWSPDG-------- 293 (425)
T ss_pred ----cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc----------ceecccCCccccCccCCCCC--------
Confidence 12223456799999877654 45665 5666665422 22223222333355677776
Q ss_pred cCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCe
Q 000454 464 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGV 543 (1491)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~V 543 (1491)
...+++.+..|.-.||-+... +....++......-
T Consensus 294 -----------------~~ivf~Sdr~G~p~I~~~~~~----------------------------g~~~~riT~~~~~~ 328 (425)
T COG0823 294 -----------------SKIVFTSDRGGRPQIYLYDLE----------------------------GSQVTRLTFSGGGN 328 (425)
T ss_pred -----------------CEEEEEeCCCCCcceEEECCC----------------------------CCceeEeeccCCCC
Confidence 235556666777666643321 11112222222222
Q ss_pred eEEEEcCCCCEEEEEecc-ce--EEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEE
Q 000454 544 NMIVWSLDNRFVLAAIMD-CR--ICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMS 600 (1491)
Q Consensus 544 tsVafSPDG~~LaSGs~D-G~--IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaS 600 (1491)
..-.|||||++|+..+.. |. |.+.|+.++.-++.+. +......-.|.|++..++.+
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEe
Confidence 256799999999887643 33 7777776665444443 22223344566644333333
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.58 Score=57.78 Aligned_cols=254 Identities=15% Similarity=0.186 Sum_probs=126.2
Q ss_pred eEEEEEcCCCCEEEEE-ECC----CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEe-CC----------
Q 000454 288 ITDLAVSSNNALVASA-SND----CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS-DD---------- 351 (1491)
Q Consensus 288 VtsLafSPDG~lLASG-S~D----GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS-~D---------- 351 (1491)
+..++++|+|++||.+ +.. ..|+|+|+.+|+.+...-.. .....+.|.+++. .|+... .+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~---~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGK---GFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSS---EEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCC---EEEEEEeCcccccccCCCC
Confidence 3467899999988865 333 35999999999765432111 1123499999987 344333 22
Q ss_pred CcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC---C-ceEEEEeCCCCCCC
Q 000454 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS---D-TLARVWNACKPNTD 427 (1491)
Q Consensus 352 GtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~---D-G~IrVWDl~t~~~~ 427 (1491)
..|.+|.+.+......+.+... ........+..++|+++|+.... + ..|.+.++....
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~----------------~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~-- 263 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEP----------------DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG-- 263 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-T----------------TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT--
T ss_pred cEEEEEECCCChHhCeeEEeec----------------CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC--
Confidence 2377778776654322222110 01112667889999998775432 2 457777775421
Q ss_pred CCCCCCceeeeecCCCCCc-eEEEEccCccccccccccCCCCCCCccccccccCCCeEEEE---eCCCeEEEEecCCCCC
Q 000454 428 DSDQPNHEIDVLSGHENDV-NYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSAIIWIPRSRRS 503 (1491)
Q Consensus 428 ~s~~~~~~i~~l~gH~~~V-~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSg---S~DGtIrIWDl~s~k~ 503 (1491)
.+......+......+ ..+....+ .+++.. ...+.|...++.....
T Consensus 264 ---~~~~~~~~l~~~~~~~~~~v~~~~~---------------------------~~yi~Tn~~a~~~~l~~~~l~~~~~ 313 (414)
T PF02897_consen 264 ---SPDAKPKLLSPREDGVEYYVDHHGD---------------------------RLYILTNDDAPNGRLVAVDLADPSP 313 (414)
T ss_dssp ---TSS-SEEEEEESSSS-EEEEEEETT---------------------------EEEEEE-TT-TT-EEEEEETTSTSG
T ss_pred ---CCcCCcEEEeCCCCceEEEEEccCC---------------------------EEEEeeCCCCCCcEEEEeccccccc
Confidence 0111222232222222 22322211 122221 2234555555554210
Q ss_pred CccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEe-ccc--eEEEEECCCCceEEEEeC
Q 000454 504 HPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI-MDC--RICVWNAADGSLVHSLTG 580 (1491)
Q Consensus 504 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs-~DG--~IrIWDl~tgkll~tL~g 580 (1491)
..| ...+..+...+.-..+...+.+|+... .++ .|++|++..+.....+..
T Consensus 314 ----~~~----------------------~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~ 367 (414)
T PF02897_consen 314 ----AEW----------------------WTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPL 367 (414)
T ss_dssp ----GGE----------------------EEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEES
T ss_pred ----ccc----------------------eeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecC
Confidence 001 112334444333333444455555543 333 589999984444444433
Q ss_pred -CCCCeEEEEEecCCCcEEEEEeC---CCcEEEEeCCCCceEE
Q 000454 581 -HTESTYVLDVHPFNPRIAMSAGY---DGKTIVWDIWEGIPIR 619 (1491)
Q Consensus 581 -Hs~~VtsLafSPdd~~lLaSgS~---DGtIrIWDl~tGk~l~ 619 (1491)
-.+.|..+...+....+.++.+. -++|..||+.+++...
T Consensus 368 p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 368 PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 33445666655655555555442 4578889998887543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.69 E-value=1.4 Score=54.68 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=46.3
Q ss_pred EEEcCCCCEEEEEeCC----------C-eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000454 249 AIFDRSGRYVITGSDD----------R-LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 249 VaFSpDG~~LATGS~D----------G-tIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~ 315 (1491)
++.+|.|.-||...++ . .|.||+.. |+++.++.-..+.|.++.|+.+. .|+....||.++++|+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 4455555555554333 2 59999876 77777766444899999999865 45566789999999985
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.072 Score=69.76 Aligned_cols=143 Identities=11% Similarity=0.113 Sum_probs=96.4
Q ss_pred CCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCC-eEEEEEcC-----CCCEEEEEECCCeEEEEECCCC-Cceeeec-
Q 000454 254 SGRYVITG-SDDRLVKIWSMETAYCLASCRGHEGD-ITDLAVSS-----NNALVASASNDCIIRVWRLPDG-LPISVLR- 324 (1491)
Q Consensus 254 DG~~LATG-S~DGtIrIWDl~Tg~~l~tL~gH~~~-VtsLafSP-----DG~lLASGS~DGtIrVWDl~tg-k~i~~L~- 324 (1491)
+..+|+.- .....|.-.|+++|+.+..+..|... |..++=.. +..-.+.|-.+..|..||.+-. ..+..-.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444443 34578999999999999999977654 55554221 1234456667788999998753 2221111
Q ss_pred ---cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEEC
Q 000454 325 ---GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1491)
Q Consensus 325 ---gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafS 401 (1491)
.......|++-+.+| +||+|+.+|.||+||- .+.... ....+.+.+|..|..+
T Consensus 572 k~Y~~~~~Fs~~aTt~~G----~iavgs~~G~IRLyd~-~g~~AK-------------------T~lp~lG~pI~~iDvt 627 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG----YIAVGSNKGDIRLYDR-LGKRAK-------------------TALPGLGDPIIGIDVT 627 (794)
T ss_pred cccccCCCceEEEecCCc----eEEEEeCCCcEEeecc-cchhhh-------------------hcCCCCCCCeeEEEec
Confidence 133467788888887 6999999999999993 222111 1123457889999999
Q ss_pred CCCCEEEEecCCceEEEEeC
Q 000454 402 ANGTVFVTGSSDTLARVWNA 421 (1491)
Q Consensus 402 PDG~~LasGs~DG~IrVWDl 421 (1491)
.||++|++.+ +..|.|++.
T Consensus 628 ~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 628 ADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCCcEEEEee-cceEEEEEE
Confidence 9999988766 566777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.82 Score=56.47 Aligned_cols=250 Identities=17% Similarity=0.156 Sum_probs=130.0
Q ss_pred eEEEEecCCCCceEEEEEEeCCC----cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCC
Q 000454 330 VTAIAFSPRPGSVYQLLSSSDDG----TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1491)
Q Consensus 330 VtsLaFSPdg~s~~~LaSgS~DG----tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~ 405 (1491)
+..+.++|+++ .++++.+..| .|+++|+.+++.+..... ......++|.+++.
T Consensus 126 ~~~~~~Spdg~--~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~---------------------~~~~~~~~W~~d~~ 182 (414)
T PF02897_consen 126 LGGFSVSPDGK--RLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE---------------------NPKFSSVSWSDDGK 182 (414)
T ss_dssp EEEEEETTTSS--EEEEEEEETTSSEEEEEEEETTTTEEEEEEEE---------------------EEESEEEEECTTSS
T ss_pred eeeeeECCCCC--EEEEEecCCCCceEEEEEEECCCCcCcCCccc---------------------ccccceEEEeCCCC
Confidence 44678899987 2333444444 499999999876543210 11123499999988
Q ss_pred EEEEecC-----------CceEEEEeCCCCCCCCCCCCCceeeeecCCCCC--ceEEEEccCccccccccccCCCCCCCc
Q 000454 406 VFVTGSS-----------DTLARVWNACKPNTDDSDQPNHEIDVLSGHEND--VNYVQFSGCAVASRFSLADSSKEDSTP 472 (1491)
Q Consensus 406 ~LasGs~-----------DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~--V~sVafSpdg~as~~s~~~~~~~~~~~ 472 (1491)
.|+.... ...|+.|.+.+.. ......+...... ...+..++++
T Consensus 183 ~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~-------~~d~lvfe~~~~~~~~~~~~~s~d~----------------- 238 (414)
T PF02897_consen 183 GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ-------SEDELVFEEPDEPFWFVSVSRSKDG----------------- 238 (414)
T ss_dssp EEEEEECSTTTSS-CCGCCEEEEEEETTS-G-------GG-EEEEC-TTCTTSEEEEEE-TTS-----------------
T ss_pred EEEEEEeCcccccccCCCCcEEEEEECCCCh-------HhCeeEEeecCCCcEEEEEEecCcc-----------------
Confidence 7665542 2347778775421 1112333333333 4456666664
Q ss_pred cccccccCCCeEE-EEeCCC---eEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEE
Q 000454 473 KFKNSWFCHDNIV-TCSRDG---SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1491)
Q Consensus 473 ~~~~~~~~~~~La-SgS~DG---tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVaf 548 (1491)
.+|+ ...... .+.+.++.... ........+......+....-
T Consensus 239 ---------~~l~i~~~~~~~~s~v~~~d~~~~~-------------------------~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 239 ---------RYLFISSSSGTSESEVYLLDLDDGG-------------------------SPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp ---------SEEEEEEESSSSEEEEEEEECCCTT-------------------------TSS-SEEEEEESSSS-EEEEE
T ss_pred ---------cEEEEEEEccccCCeEEEEeccccC-------------------------CCcCCcEEEeCCCCceEEEEE
Confidence 3433 333332 34555554310 000112222222333333333
Q ss_pred cCCCCEEEEEe---ccceEEEEECCCCce---EEEEeCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCceEEE
Q 000454 549 SLDNRFVLAAI---MDCRICVWNAADGSL---VHSLTGHTESTYVLDVHPFNPRIAMSAGYDG--KTIVWDIWEGIPIRI 620 (1491)
Q Consensus 549 SPDG~~LaSGs---~DG~IrIWDl~tgkl---l~tL~gHs~~VtsLafSPdd~~lLaSgS~DG--tIrIWDl~tGk~l~~ 620 (1491)
...+.+++... ..+.|...++..... ...+..|...+.-..+..++..+++..-.++ .|++|++..+.....
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~ 364 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESRE 364 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEee
Confidence 33444444332 346777788877653 3356666664444444444667777777666 578899973554444
Q ss_pred Eee-CCcceEEEEEcCCCCEEEEE--eC--CCcEEEEECCCCccc
Q 000454 621 YEI-SRFRLVDGKFSPDGASIILS--DD--VGQLYILNTGQGESQ 660 (1491)
Q Consensus 621 l~~-h~~~VtslafSPDG~~LAsg--s~--DG~I~IWdl~tG~~~ 660 (1491)
+.. ..+.|..+...+++..|... +- -++|+.||+.+++..
T Consensus 365 ~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 365 IPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred ecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 443 34456666666777766543 22 468999999888753
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.11 Score=66.14 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=93.4
Q ss_pred EcCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-------------------------
Q 000454 251 FDRSGRYVITG-SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS------------------------- 304 (1491)
Q Consensus 251 FSpDG~~LATG-S~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS------------------------- 304 (1491)
++|||+.|... -..+.+.+.|.++.+...++.-- +....++++++|+++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 44555544222 22455666666666555554421 2334455566666555543
Q ss_pred ---------------CCCeEEEEECCC----C-CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCc
Q 000454 305 ---------------NDCIIRVWRLPD----G-LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1491)
Q Consensus 305 ---------------~DGtIrVWDl~t----g-k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~ 364 (1491)
.++.|.|.|..+ + ..+..+. -......|.++||++ +.++++..+.+|.|.|+.+.+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGk--ylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGK--YFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCC--EEEEeCCCCCcEEEEEChhhhh
Confidence 234577777776 3 3333333 445678899999998 3556666799999999987553
Q ss_pred cceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCC
Q 000454 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1491)
Q Consensus 365 ~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t 423 (1491)
...-.+ .+...+.. ...-.-.....+|.++|..+.+-..|..|..|++.+
T Consensus 356 ~~~~~~-~~~~~vva--------evevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 356 LFDGKI-KPRDAVVA--------EPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhccC-CccceEEE--------eeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 211000 00000000 001133456788999999888888999999999964
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=1.3 Score=54.40 Aligned_cols=203 Identities=12% Similarity=0.082 Sum_probs=129.4
Q ss_pred cceEEEEECCCCC-EEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCC
Q 000454 393 HQIFCCAFNANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1491)
Q Consensus 393 ~~V~slafSPDG~-~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~ 471 (1491)
.....+++++.+. .+++...+..|.+.|..+.. ...... -......+++++++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~---------~~~~~~-vG~~P~~~~~~~~~---------------- 127 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT---------VLGSIP-VGLGPVGLAVDPDG---------------- 127 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccc---------eeeEee-eccCCceEEECCCC----------------
Confidence 4456788888887 45555566899999965421 111111 11145567777765
Q ss_pred ccccccccCCCeEEEEe--CCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEc
Q 000454 472 PKFKNSWFCHDNIVTCS--RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1491)
Q Consensus 472 ~~~~~~~~~~~~LaSgS--~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafS 549 (1491)
+...++-. .++++.+.|..+.+.. ........+ ..++++
T Consensus 128 ---------~~vYV~n~~~~~~~vsvid~~t~~~~-----------------------------~~~~vG~~P-~~~a~~ 168 (381)
T COG3391 128 ---------KYVYVANAGNGNNTVSVIDAATNKVT-----------------------------ATIPVGNTP-TGVAVD 168 (381)
T ss_pred ---------CEEEEEecccCCceEEEEeCCCCeEE-----------------------------EEEecCCCc-ceEEEC
Confidence 22344444 3678888877764311 111111122 779999
Q ss_pred CCCCEEEEEe-ccceEEEEECCCCceEE-E----EeCCCCCeEEEEEecCCCcEEEEEeCC--CcEEEEeCCCCceEEE-
Q 000454 550 LDNRFVLAAI-MDCRICVWNAADGSLVH-S----LTGHTESTYVLDVHPFNPRIAMSAGYD--GKTIVWDIWEGIPIRI- 620 (1491)
Q Consensus 550 PDG~~LaSGs-~DG~IrIWDl~tgkll~-t----L~gHs~~VtsLafSPdd~~lLaSgS~D--GtIrIWDl~tGk~l~~- 620 (1491)
|+|..++++. .++.|.+.|..+..... . +.-. ..-..+.+.|++.++.++...+ +.+.+.|..++.....
T Consensus 169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~ 247 (381)
T COG3391 169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD 247 (381)
T ss_pred CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec
Confidence 9999777665 78899999977665553 1 2112 2236788999666666555554 6999999988887776
Q ss_pred EeeCCcceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCcccc
Q 000454 621 YEISRFRLVDGKFSPDGASIILSDD-VGQLYILNTGQGESQK 661 (1491)
Q Consensus 621 l~~h~~~VtslafSPDG~~LAsgs~-DG~I~IWdl~tG~~~~ 661 (1491)
+.........+.++|+|+++.+... .+.+.+.|..+.....
T Consensus 248 ~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 248 LPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred cccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 2222214567899999999988744 4889999987766544
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.42 E-value=6 Score=52.82 Aligned_cols=112 Identities=9% Similarity=-0.017 Sum_probs=73.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC--------eEEEEEc----------------CCCCEEEEEECCCeEE
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEGD--------ITDLAVS----------------SNNALVASASNDCIIR 310 (1491)
Q Consensus 255 G~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~--------VtsLafS----------------PDG~lLASGS~DGtIr 310 (1491)
+..|..++.++.|.-.|..||+.+..+...... ...+++. .++..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777788899999999999998877532210 1122221 1344788888999999
Q ss_pred EEECCCCCceeeeccCCCceE-------------EEEecCC--CCceEEEEEEeC----------CCcEEEEccCCCCcc
Q 000454 311 VWRLPDGLPISVLRGHTAAVT-------------AIAFSPR--PGSVYQLLSSSD----------DGTCRIWDARYSQFS 365 (1491)
Q Consensus 311 VWDl~tgk~i~~L~gHs~~Vt-------------sLaFSPd--g~s~~~LaSgS~----------DGtVrIWDl~tg~~~ 365 (1491)
-.|..+|+.+..+.. .+.|. .+.-.|- +. .+++++. +|.|+-+|+.+|+.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g---~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGT---TVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECC---EEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999998876642 22211 1111110 11 4566642 688999999999988
Q ss_pred ceeec
Q 000454 366 PRIYI 370 (1491)
Q Consensus 366 ~~i~~ 370 (1491)
-.+..
T Consensus 350 W~~~~ 354 (764)
T TIGR03074 350 WAWDP 354 (764)
T ss_pred eEEec
Confidence 88764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.39 Score=55.31 Aligned_cols=171 Identities=10% Similarity=0.114 Sum_probs=98.5
Q ss_pred EEEEccCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000454 236 IKRVRGHRNAVYCAIFDRSGR-YVITGSDDRLVKIWSMETAYCLASCRGH-EGDITDLAVSSNNALVASASNDCIIRVWR 313 (1491)
Q Consensus 236 v~tL~GH~~~Vt~VaFSpDG~-~LATGS~DGtIrIWDl~Tg~~l~tL~gH-~~~VtsLafSPDG~lLASGS~DGtIrVWD 313 (1491)
.+.|.|-...|..|+|+|+.. ++|+....+.|...+. +|+.++.+.-. .+..-.|++..++.++++--.++.+.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 456777777899999999866 4555566788888886 48888887633 46789999998887777665689999998
Q ss_pred CCCCC-c--e---eeec-----cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCC---CCccceeecCCCCCcccC
Q 000454 314 LPDGL-P--I---SVLR-----GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY---SQFSPRIYIPRPSDAVAG 379 (1491)
Q Consensus 314 l~tgk-~--i---~~L~-----gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~t---g~~~~~i~~~~~~~~~~g 379 (1491)
+.... . . ..+. .+...+-.|+|.|.++ .|+.+-......||.+.. .......... ..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~---~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~----~~-- 163 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN---RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQ----DL-- 163 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTT---EEEEEEESSSEEEEEEESTT-SS--EEEE-H----HH--
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCC---EEEEEeCCCChhhEEEccccCccceeecccc----cc--
Confidence 84321 1 1 1111 2445689999999877 666777777777776654 1111111000 00
Q ss_pred CCCCCCCCCCCCCcceEEEEECCC-CCEEEEecCCceEEEEeCC
Q 000454 380 RNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 380 ~~~~~~~s~~~h~~~V~slafSPD-G~~LasGs~DG~IrVWDl~ 422 (1491)
.........+..++++|. |.+++.......|.++|..
T Consensus 164 ------~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 164 ------DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp ------H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred ------ccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC
Confidence 001113345788899885 5667777778888888853
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.7 Score=50.27 Aligned_cols=256 Identities=14% Similarity=0.156 Sum_probs=128.1
Q ss_pred CCCCEEEEEECCCeEEEEECCC-CCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCC
Q 000454 295 SNNALVASASNDCIIRVWRLPD-GLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRP 373 (1491)
Q Consensus 295 PDG~lLASGS~DGtIrVWDl~t-gk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~ 373 (1491)
..++.|+.|+.+| |.++++.. ........ ...|..+...|+-+ .|++-+ |+.|.++++..-....... +..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~---~llvLs-d~~l~~~~L~~l~~~~~~~-~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN---LLLVLS-DGQLYVYDLDSLEPVSTSA-PLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC---EEEEEc-CCccEEEEchhhccccccc-ccc
Confidence 3577899999998 89999833 33333332 33499999999865 455544 4999999987654333210 000
Q ss_pred CCcccCCCCCCCCCCCCCCcceEEEE--ECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCC-ceeeeecCCCCCceEEE
Q 000454 374 SDAVAGRNMAPSSSAGPQSHQIFCCA--FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN-HEIDVLSGHENDVNYVQ 450 (1491)
Q Consensus 374 ~~~~~g~~~~~~~s~~~h~~~V~sla--fSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~-~~i~~l~gH~~~V~sVa 450 (1491)
................+..++ -...+...++......|.+|....... .. .....+.- ...+..++
T Consensus 77 -----~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~-----~f~~~~ke~~l-p~~~~~i~ 145 (275)
T PF00780_consen 77 -----FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRN-----SFSKLLKEISL-PDPPSSIA 145 (275)
T ss_pred -----ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcc-----cccceeEEEEc-CCCcEEEE
Confidence 000000000111222344444 122333333334445888888754211 01 22333322 36677888
Q ss_pred EccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCC
Q 000454 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530 (1491)
Q Consensus 451 fSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 530 (1491)
|.+ +.++.|..++ ..+.|+.++.......... ..
T Consensus 146 ~~~----------------------------~~i~v~~~~~-f~~idl~~~~~~~l~~~~~-----------------~~ 179 (275)
T PF00780_consen 146 FLG----------------------------NKICVGTSKG-FYLIDLNTGSPSELLDPSD-----------------SS 179 (275)
T ss_pred EeC----------------------------CEEEEEeCCc-eEEEecCCCCceEEeCccC-----------------Cc
Confidence 874 3666666554 6677877543211100000 00
Q ss_pred CCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEE--EEeCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 000454 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH--SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608 (1491)
Q Consensus 531 ~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~--tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIr 608 (1491)
...........++..+.+. ++.+|++- +..-.+.|. .|+..+ .+.- ......+++.. + +|+..+ ++.|.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W-~~~p~~~~~~~--p-yli~~~-~~~iE 250 (275)
T PF00780_consen 180 SSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQW-SSAPQSVAYSS--P-YLIAFS-SNSIE 250 (275)
T ss_pred chhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEc-CCchhEEEEEC--C-EEEEEC-CCEEE
Confidence 0001111122334444443 45666643 333333443 454443 3322 22345566643 3 444344 46699
Q ss_pred EEeCCCCceEEEEeeC
Q 000454 609 VWDIWEGIPIRIYEIS 624 (1491)
Q Consensus 609 IWDl~tGk~l~~l~~h 624 (1491)
||++.+|++++.+...
T Consensus 251 V~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 251 VRSLETGELVQTIPLP 266 (275)
T ss_pred EEECcCCcEEEEEECC
Confidence 9999999999988743
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0097 Score=44.72 Aligned_cols=39 Identities=36% Similarity=0.632 Sum_probs=35.2
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 000454 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWR 313 (1491)
Q Consensus 275 g~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWD 313 (1491)
+.++..+..|...|.++.|.+++.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456777888999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.014 Score=72.19 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=79.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeE-EEEEcCCCCEEEEEECCCeEEEEECCCCCceee
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT-DLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~Vt-sLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~ 322 (1491)
..|.-+.|+|.-..||++..+|.|.+..+. .+.+.++.-|...++ +++|.|||++||.|-.||+|++.|+.++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 467889999999999999999999999988 888888887777777 999999999999999999999999999877765
Q ss_pred e-ccCCCceEEEEecC
Q 000454 323 L-RGHTAAVTAIAFSP 337 (1491)
Q Consensus 323 L-~gHs~~VtsLaFSP 337 (1491)
+ ..-...|.++.|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 3 22446677777764
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.23 Score=49.82 Aligned_cols=104 Identities=18% Similarity=0.248 Sum_probs=72.3
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCcee
Q 000454 246 VYCAIFDR---SG-RYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1491)
Q Consensus 246 Vt~VaFSp---DG-~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~ 321 (1491)
|+++++.. || ..|+.|++|..|+||+-. ..+..+.. ...|++++-... ..++.+..+|+|-||+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 56666655 33 589999999999999854 66667664 566778777665 57889999999999974 34445
Q ss_pred eeccCCCceEEEEec-CCCCceEEEEEEeCCCcEEE
Q 000454 322 VLRGHTAAVTAIAFS-PRPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 322 ~L~gHs~~VtsLaFS-Pdg~s~~~LaSgS~DGtVrI 356 (1491)
..+.... ++++++. .++.....|++|-.+|.|-+
T Consensus 76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 5553333 5555544 34434457999999997743
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.16 Score=62.40 Aligned_cols=253 Identities=12% Similarity=0.085 Sum_probs=124.5
Q ss_pred ceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEE
Q 000454 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 408 (1491)
Q Consensus 329 ~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~La 408 (1491)
.|+.|.|.++.. -|+++...|.|.||.+...+....-.. ..-..+.+.+ +
T Consensus 3 ~v~~vs~a~~t~---Elav~~~~GeVv~~k~~~n~~~~~~~~----------------------~~~~~~~~~~----~- 52 (395)
T PF08596_consen 3 SVTHVSFAPETL---ELAVGLESGEVVLFKFGKNQNYGNREQ----------------------PPDLDYNFRR----F- 52 (395)
T ss_dssp -EEEEEEETTTT---EEEEEETTS-EEEEEEEE----------------------------------------S------
T ss_pred eEEEEEecCCCc---eEEEEccCCcEEEEEcccCCCCCccCC----------------------CcccCccccc----c-
Confidence 488999999976 899999999999998865443220000 0000000000 0
Q ss_pred EecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEe
Q 000454 409 TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCS 488 (1491)
Q Consensus 409 sGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS 488 (1491)
...++.-.+-|+.........+...+...+....+.|++++.+.-| .++.|.
T Consensus 53 -~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG---------------------------Fvaigy 104 (395)
T PF08596_consen 53 -SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG---------------------------FVAIGY 104 (395)
T ss_dssp --GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS---------------------------EEEEEE
T ss_pred -cccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCc---------------------------EEEEEe
Confidence 0001111122332111100011133445556668999999998765 899999
Q ss_pred CCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcC-----CC---CEEEEEec
Q 000454 489 RDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL-----DN---RFVLAAIM 560 (1491)
Q Consensus 489 ~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSP-----DG---~~LaSGs~ 560 (1491)
.+|.+.|.|++....+.. ....- ..........|+++.|+- |+ -.+++|+.
T Consensus 105 ~~G~l~viD~RGPavI~~-----~~i~~----------------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 105 ESGSLVVIDLRGPAVIYN-----ENIRE----------------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp TTSEEEEEETTTTEEEEE-----EEGGG------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred cCCcEEEEECCCCeEEee-----ccccc----------------cccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 999999999986442211 00000 000111234567777752 33 46888999
Q ss_pred cceEEEEECCC---CceE----EEEeCCCCCeEEEE-EecC--------------------CCcEEEEEeCCCcEEEEeC
Q 000454 561 DCRICVWNAAD---GSLV----HSLTGHTESTYVLD-VHPF--------------------NPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 561 DG~IrIWDl~t---gkll----~tL~gHs~~VtsLa-fSPd--------------------d~~lLaSgS~DGtIrIWDl 612 (1491)
.|.+.+|.+.- +... .....+.+.|..|. |..+ -+.+++.+ .+..|+|+..
T Consensus 164 ~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv~~~ 242 (395)
T PF08596_consen 164 SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRVFKP 242 (395)
T ss_dssp TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEEE-T
T ss_pred CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEEEeC
Confidence 99999998741 2222 22224556666655 3221 01244434 4667999999
Q ss_pred CCCceEEEEeeCCcceEEEEE-----cCCCCEEEEEeCCCcEEEEECCCCcccc
Q 000454 613 WEGIPIRIYEISRFRLVDGKF-----SPDGASIILSDDVGQLYILNTGQGESQK 661 (1491)
Q Consensus 613 ~tGk~l~~l~~h~~~Vtslaf-----SPDG~~LAsgs~DG~I~IWdl~tG~~~~ 661 (1491)
.+.+..............+.+ ...+..|++-..+|.|+++.+..-+.+.
T Consensus 243 ~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~ 296 (395)
T PF08596_consen 243 PKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIK 296 (395)
T ss_dssp T---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEE
T ss_pred CCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhh
Confidence 888877665522223334455 2367778888999999999997755543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.3 Score=52.66 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=68.5
Q ss_pred CCCeeEEEEcCCCCEEEEEec-cceEEEEECCC--C----ce-EEEEeCCCCCeEEEEEecCCCcEEEEEeCCC-cEEEE
Q 000454 540 PRGVNMIVWSLDNRFVLAAIM-DCRICVWNAAD--G----SL-VHSLTGHTESTYVLDVHPFNPRIAMSAGYDG-KTIVW 610 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~-DG~IrIWDl~t--g----kl-l~tL~gHs~~VtsLafSPdd~~lLaSgS~DG-tIrIW 610 (1491)
-..-+.|+||||++.|+.+.. .+.|+-|++.. + +. ...+....+..-.++... ++.+.+++..+| .|.+|
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEE
Confidence 445678999999988877765 47888887752 1 11 112222334444555655 445554444444 89999
Q ss_pred eCCCCceEEEEeeCCcceEEEEE-cCCCCEEEEEeC
Q 000454 611 DIWEGIPIRIYEISRFRLVDGKF-SPDGASIILSDD 645 (1491)
Q Consensus 611 Dl~tGk~l~~l~~h~~~Vtslaf-SPDG~~LAsgs~ 645 (1491)
+.. |+++..+......+++++| .|+.+.|.+++.
T Consensus 241 ~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 241 NPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 997 9999999877678888888 456666665544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.2 Score=55.65 Aligned_cols=128 Identities=15% Similarity=0.114 Sum_probs=69.6
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEE-cc
Q 000454 281 CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIW-DA 359 (1491)
Q Consensus 281 L~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIW-Dl 359 (1491)
+.........|.++|+|++++.+ .+|...|+.....+... .+.-..++|.+.+ .+++-...+.|.|+ ++
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n----~yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN----RYAVLESSSTIKIYKNF 97 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS----EEEEE-TTS-EEEEETT
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc----cEEEEECCCeEEEEEcC
Confidence 33445568899999999999885 47788888733322221 2345568899854 57777778889996 44
Q ss_pred CCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeee
Q 000454 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL 439 (1491)
Q Consensus 360 ~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l 439 (1491)
. ......+.. ...+..+-. |.+|+..+.+ .|.+||+.+ ...+..+
T Consensus 98 ~-~~~~k~i~~---------------------~~~~~~If~---G~LL~~~~~~-~i~~yDw~~---------~~~i~~i 142 (443)
T PF04053_consen 98 K-NEVVKSIKL---------------------PFSVEKIFG---GNLLGVKSSD-FICFYDWET---------GKLIRRI 142 (443)
T ss_dssp E-E-TT--------------------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT-----------EEEEE
T ss_pred c-cccceEEcC---------------------CcccceEEc---CcEEEEECCC-CEEEEEhhH---------cceeeEE
Confidence 2 222222211 111233322 8877777655 899999975 4455555
Q ss_pred cCCCCCceEEEEccCc
Q 000454 440 SGHENDVNYVQFSGCA 455 (1491)
Q Consensus 440 ~gH~~~V~sVafSpdg 455 (1491)
... .|..|.|++++
T Consensus 143 ~v~--~vk~V~Ws~~g 156 (443)
T PF04053_consen 143 DVS--AVKYVIWSDDG 156 (443)
T ss_dssp SS---E-EEEEE-TTS
T ss_pred ecC--CCcEEEEECCC
Confidence 533 38999999886
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.29 Score=63.25 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=87.3
Q ss_pred CCEEEEEEcCCCCEEEEEe------CCC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---------
Q 000454 244 NAVYCAIFDRSGRYVITGS------DDR--LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND--------- 306 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS------~DG--tIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D--------- 306 (1491)
..|...+++|||+.+|..- .|. .|.+++.. +.......+. ..+.-.|+|||..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678999999999987665 244 45555542 3332223332 38889999999988877532
Q ss_pred ---CeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEE---EccCCCCccceeecCCCCCcccCC
Q 000454 307 ---CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI---WDARYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 307 ---GtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrI---WDl~tg~~~~~i~~~~~~~~~~g~ 380 (1491)
+.+.+..+..+.... ...+.|..+.|+|||. +|+... +|.|.+ -....|. ..+.. +
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~---RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~--~------- 488 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGV---RAAMII-GGKVYLAVVEQTEDGQ--YALTN--P------- 488 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCC---EEEEEE-CCEEEEEEEEeCCCCc--eeecc--c-------
Confidence 233333444333322 2356799999999998 555444 466666 3333332 11100 0
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeC
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421 (1491)
Q Consensus 381 ~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl 421 (1491)
..........+..+.|..++.++ ++..++...+|.+
T Consensus 489 ----~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 489 ----REVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred ----EEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 00001122335778999999855 5555555555654
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.033 Score=69.14 Aligned_cols=78 Identities=10% Similarity=0.137 Sum_probs=69.3
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCCcceE-EEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 000454 583 ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV-DGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1491)
Q Consensus 583 ~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~~~Vt-slafSPDG~~LAsgs~DG~I~IWdl~tG~~~~ 661 (1491)
..|.-+.|+| .-.++|++..+|.|.+..+. .+.++++..+...++ +++|.|||+.||+|-.||+|.+-|+.+|..+.
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3477889999 67899999999999999996 889999987777777 99999999999999999999999999987765
Q ss_pred c
Q 000454 662 D 662 (1491)
Q Consensus 662 ~ 662 (1491)
.
T Consensus 99 ~ 99 (665)
T KOG4640|consen 99 S 99 (665)
T ss_pred c
Confidence 4
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.51 Score=58.01 Aligned_cols=137 Identities=11% Similarity=0.126 Sum_probs=94.9
Q ss_pred EEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-------EEEEEECCCeEEEEECCC-CC-ceeeeccCC--
Q 000454 259 ITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA-------LVASASNDCIIRVWRLPD-GL-PISVLRGHT-- 327 (1491)
Q Consensus 259 ATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~-------lLASGS~DGtIrVWDl~t-gk-~i~~L~gHs-- 327 (1491)
.++.....|+-.|++.|+.+..+.-|.. |.-+.+.|+.+ .-+.|-.+..|+-||.+- +. .+...++|.
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 3445556688889999999999987766 88888888754 123455677899999863 22 233333332
Q ss_pred --CceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCC
Q 000454 328 --AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405 (1491)
Q Consensus 328 --~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~ 405 (1491)
....|++-..+| ++++|+.+|.|++||- .+....+. ..+.+..|..+..+.+|+
T Consensus 429 ~k~nFsc~aTT~sG----~IvvgS~~GdIRLYdr-i~~~AKTA-------------------lPgLG~~I~hVdvtadGK 484 (644)
T KOG2395|consen 429 TKNNFSCFATTESG----YIVVGSLKGDIRLYDR-IGRRAKTA-------------------LPGLGDAIKHVDVTADGK 484 (644)
T ss_pred cccccceeeecCCc----eEEEeecCCcEEeehh-hhhhhhhc-------------------ccccCCceeeEEeeccCc
Confidence 345566666665 7999999999999996 33322221 234677899999999999
Q ss_pred EEEEecCCceEEEEeC
Q 000454 406 VFVTGSSDTLARVWNA 421 (1491)
Q Consensus 406 ~LasGs~DG~IrVWDl 421 (1491)
+|++.+ +..+.+.++
T Consensus 485 wil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 485 WILATC-KTYLLLIDT 499 (644)
T ss_pred EEEEec-ccEEEEEEE
Confidence 988665 566666665
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.40 E-value=3.7 Score=49.50 Aligned_cols=73 Identities=18% Similarity=0.064 Sum_probs=44.3
Q ss_pred EEeCCCCCeEEEEEecC------CCcEEEEEeCCCcEEEEeCCCCceEEEE---e-eCCcceEEEEEcCCCCEEEEEeCC
Q 000454 577 SLTGHTESTYVLDVHPF------NPRIAMSAGYDGKTIVWDIWEGIPIRIY---E-ISRFRLVDGKFSPDGASIILSDDV 646 (1491)
Q Consensus 577 tL~gHs~~VtsLafSPd------d~~lLaSgS~DGtIrIWDl~tGk~l~~l---~-~h~~~VtslafSPDG~~LAsgs~D 646 (1491)
.+..| ..+..+.|-.. .+.++++.-..+.|....+..+..+... . .....+.+|++.|||.++++.+.+
T Consensus 248 ~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~ 326 (331)
T PF07995_consen 248 AYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSD 326 (331)
T ss_dssp EETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TT
T ss_pred eecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCC
Confidence 34434 45677777642 2346655555667888787655433222 2 223378999999999999998888
Q ss_pred CcEE
Q 000454 647 GQLY 650 (1491)
Q Consensus 647 G~I~ 650 (1491)
|.|+
T Consensus 327 G~iy 330 (331)
T PF07995_consen 327 GKIY 330 (331)
T ss_dssp TTEE
T ss_pred CeEe
Confidence 9875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.35 E-value=4.4 Score=48.32 Aligned_cols=233 Identities=11% Similarity=0.061 Sum_probs=127.4
Q ss_pred EEcCCCC-EEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeec
Q 000454 292 AVSSNNA-LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370 (1491)
Q Consensus 292 afSPDG~-lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~ 370 (1491)
.|.++.. ++.+--..+.|.-|+..+++. ..+. +.+.+.++.....+. .|+++. .| +.+++..++.....+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g---~Lv~~~-~g-~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGG---RLIACE-HG-VRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCC---eEEEEc-cc-cEEEeccCCceeEEecc
Confidence 4666666 444545567888888776643 2333 233344444444443 454444 33 66777655554222211
Q ss_pred CCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecC---------CceEEEEeCCCCCCCCCCCCCceeeeecC
Q 000454 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS---------DTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1491)
Q Consensus 371 ~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~---------DG~IrVWDl~t~~~~~s~~~~~~i~~l~g 441 (1491)
.. ........+.+...|+|.+.++... -..-.||.+.. .......+..
T Consensus 104 ~~---------------~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p--------~g~~~~l~~~ 160 (307)
T COG3386 104 PE---------------DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP--------DGGVVRLLDD 160 (307)
T ss_pred cc---------------CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC--------CCCEEEeecC
Confidence 10 0112244567777888876655433 00113343321 1334555555
Q ss_pred CCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCC
Q 000454 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1491)
Q Consensus 442 H~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~ 521 (1491)
+-..-+.|+|+|++ ..++++=+..+.|..|++..... ..
T Consensus 161 ~~~~~NGla~SpDg-------------------------~tly~aDT~~~~i~r~~~d~~~g--~~-------------- 199 (307)
T COG3386 161 DLTIPNGLAFSPDG-------------------------KTLYVADTPANRIHRYDLDPATG--PI-------------- 199 (307)
T ss_pred cEEecCceEECCCC-------------------------CEEEEEeCCCCeEEEEecCcccC--cc--------------
Confidence 56667789999986 22445555567777776652000 00
Q ss_pred CCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccc-eEEEEECCCCceEEEEeCCCCCeEEEEEecC-CCcEEE
Q 000454 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAADGSLVHSLTGHTESTYVLDVHPF-NPRIAM 599 (1491)
Q Consensus 522 ~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG-~IrIWDl~tgkll~tL~gHs~~VtsLafSPd-d~~lLa 599 (1491)
.............+..-.++...+|.+.+++..+| .|.+|+.. |+++..+.-+...+++++|--. ...+++
T Consensus 200 ------~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 200 ------GGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred ------CCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 00000111112334455678888998886665554 99999998 9999999887777888888432 234444
Q ss_pred EEe
Q 000454 600 SAG 602 (1491)
Q Consensus 600 SgS 602 (1491)
|+.
T Consensus 273 Ts~ 275 (307)
T COG3386 273 TSA 275 (307)
T ss_pred Eec
Confidence 444
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=15 Score=48.69 Aligned_cols=113 Identities=5% Similarity=-0.007 Sum_probs=68.8
Q ss_pred CCEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC------CeEEEE
Q 000454 244 NAVYCAIFDRSGRYVITGSD-----DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND------CIIRVW 312 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~-----DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~D------GtIrVW 312 (1491)
-.+..+.++|||++||.+.+ ...|+|-|+.+|..+...-.... ..++|.+|++.|+....+ ..|.+|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 35677889999999987643 23799999998864433221221 569999999866665442 368888
Q ss_pred ECCCC--CceeeeccCCCceE-EEEecCCCCceEEEEEE--eCCCcEEEEccC
Q 000454 313 RLPDG--LPISVLRGHTAAVT-AIAFSPRPGSVYQLLSS--SDDGTCRIWDAR 360 (1491)
Q Consensus 313 Dl~tg--k~i~~L~gHs~~Vt-sLaFSPdg~s~~~LaSg--S~DGtVrIWDl~ 360 (1491)
++.++ +....+........ .+..+.++.. .++.+ ..++.+.+|+..
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~--l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHY--VVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCE--EEEEEECCccccEEEEECc
Confidence 88887 33444543333333 2333436552 23222 233568888853
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.29 E-value=3.7 Score=47.43 Aligned_cols=256 Identities=12% Similarity=0.111 Sum_probs=137.7
Q ss_pred CceEEEEecCCCCceEEEEEEeCCCc-EEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCE
Q 000454 328 AAVTAIAFSPRPGSVYQLLSSSDDGT-CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV 406 (1491)
Q Consensus 328 ~~VtsLaFSPdg~s~~~LaSgS~DGt-VrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~ 406 (1491)
.....|+|+|... ..++.+-.-|+ ..++|..+.+....+..... ....-.-.|+|||.+
T Consensus 68 aR~Hgi~~~p~~~--ravafARrPGtf~~vfD~~~~~~pv~~~s~~~------------------RHfyGHGvfs~dG~~ 127 (366)
T COG3490 68 ARGHGIAFHPALP--RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG------------------RHFYGHGVFSPDGRL 127 (366)
T ss_pred cccCCeecCCCCc--ceEEEEecCCceEEEECCCCCcCcEEEecccC------------------ceeecccccCCCCcE
Confidence 3345678888754 35666666666 46789888876666532211 111223478999999
Q ss_pred EEEecC-----CceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCC
Q 000454 407 FVTGSS-----DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCH 481 (1491)
Q Consensus 407 LasGs~-----DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~ 481 (1491)
|.+.-. .|.|-|||.+.. ...+..+..|.-.-..+.|.++|
T Consensus 128 LYATEndfd~~rGViGvYd~r~~--------fqrvgE~~t~GiGpHev~lm~DG-------------------------- 173 (366)
T COG3490 128 LYATENDFDPNRGVIGVYDAREG--------FQRVGEFSTHGIGPHEVTLMADG-------------------------- 173 (366)
T ss_pred EEeecCCCCCCCceEEEEecccc--------cceecccccCCcCcceeEEecCC--------------------------
Confidence 987644 378999999742 44566777777777778888876
Q ss_pred CeEEEEeCCCeEEEE-ecCCCCCCccccccccccccCCCCCCCCCCCCCCCCce--ecc--CCCCCeeEEEEcCCCCEEE
Q 000454 482 DNIVTCSRDGSAIIW-IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ--RIL--PTPRGVNMIVWSLDNRFVL 556 (1491)
Q Consensus 482 ~~LaSgS~DGtIrIW-Dl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~l~--~h~~~VtsVafSPDG~~La 556 (1491)
..++.+ +|-|..- |+...+ -.+.....++. ......+..+. .+. .+...|..++..+||+.++
T Consensus 174 rtlvva--nGGIethpdfgR~~--lNldsMePSlv--------lld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwf 241 (366)
T COG3490 174 RTLVVA--NGGIETHPDFGRTE--LNLDSMEPSLV--------LLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWF 241 (366)
T ss_pred cEEEEe--CCceecccccCccc--cchhhcCccEE--------EEeccccchhhhccCchhhhhcceeeeeeCCCCcEEE
Confidence 222222 1222222 111000 00000000000 00000011110 111 2344578888888887666
Q ss_pred EEeccce-----EEEEECCCCceEEEEeC-------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeC
Q 000454 557 AAIMDCR-----ICVWNAADGSLVHSLTG-------HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1491)
Q Consensus 557 SGs~DG~-----IrIWDl~tgkll~tL~g-------Hs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h 624 (1491)
.+-..|- -.|=-...|+.+.-+.. ...-|-+|+.+-.++.+.+|.-..+...|||..+|..+..-...
T Consensus 242 gcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~ 321 (366)
T COG3490 242 GCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP 321 (366)
T ss_pred EEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc
Confidence 5432221 11111223333333321 12346678887766777777777788999999999887654311
Q ss_pred CcceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 000454 625 RFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 625 ~~~VtslafSPDG~~LAsgs~DG~I~IWd 653 (1491)
. +.-.-+...-+++.+.+|.+.++.
T Consensus 322 d----aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 322 D----AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred c----cccceeccCceEEecCCceEEecc
Confidence 1 122234445567777778888774
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.4 Score=57.12 Aligned_cols=116 Identities=18% Similarity=0.165 Sum_probs=64.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEE------CCC--eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCC-CcE
Q 000454 284 HEGDITDLAVSSNNALVASAS------NDC--IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD-GTC 354 (1491)
Q Consensus 284 H~~~VtsLafSPDG~lLASGS------~DG--tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~D-GtV 354 (1491)
....+.+.+++|+|+.+|... .|. .|.+++. .+.....+.+ ...+.-.|+|++. .|++.... ..+
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~---~lw~v~dg~~~~ 421 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDAD---AVWVVVDGNTVV 421 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCC---ceEEEecCcceE
Confidence 334688999999999887765 243 4555554 2333222333 2378899999976 56655433 223
Q ss_pred EEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEE
Q 000454 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418 (1491)
Q Consensus 355 rIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrV 418 (1491)
++.+-.....+..+... +... . ......|..+.|||||..|+... +|.|+|
T Consensus 422 ~v~~~~~~gql~~~~vd-------~ge~--~---~~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 422 RVIRDPATGQLARTPVD-------ASAV--A---SRVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred EEeccCCCceEEEEecc-------Cchh--h---hccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 33332211111111110 0000 0 02345699999999999888765 467766
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.2 Score=53.11 Aligned_cols=142 Identities=11% Similarity=0.127 Sum_probs=89.5
Q ss_pred CCEEEEEeC----------CCeEEEEECCCC----eEEEEE--ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCC
Q 000454 255 GRYVITGSD----------DRLVKIWSMETA----YCLASC--RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318 (1491)
Q Consensus 255 G~~LATGS~----------DGtIrIWDl~Tg----~~l~tL--~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk 318 (1491)
-.+||.|.. .|.|.++++... ..+..+ ....++|++|+-- ++ +|+++. .+.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence 467777742 299999999884 122222 2357889999876 44 455544 4789999998777
Q ss_pred -ceeeec-cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCC-CccceeecCCCCCcccCCCCCCCCCCCCCCcce
Q 000454 319 -PISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS-QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1491)
Q Consensus 319 -~i~~L~-gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg-~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V 395 (1491)
.+..-. .....|.++....+ +++.|..-..|.++.+... ..+..+. .......+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~-----~I~vgD~~~sv~~~~~~~~~~~l~~va------------------~d~~~~~v 175 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKN-----YILVGDAMKSVSLLRYDEENNKLILVA------------------RDYQPRWV 175 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETT-----EEEEEESSSSEEEEEEETTTE-EEEEE------------------EESS-BEE
T ss_pred cchhhheecceEEEEEEecccc-----EEEEEEcccCEEEEEEEccCCEEEEEE------------------ecCCCccE
Confidence 332222 12236666666644 7889988888888755431 1111110 01135568
Q ss_pred EEEEECCCCCEEEEecCCceEEEEeCC
Q 000454 396 FCCAFNANGTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 396 ~slafSPDG~~LasGs~DG~IrVWDl~ 422 (1491)
+++.|-+++..++++..+|.|.++...
T Consensus 176 ~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 176 TAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 899998777899999999999999885
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.2 Score=53.20 Aligned_cols=216 Identities=9% Similarity=0.092 Sum_probs=118.0
Q ss_pred cEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEE---EECCC----CCEEEEecC----------Cce
Q 000454 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC---AFNAN----GTVFVTGSS----------DTL 415 (1491)
Q Consensus 353 tVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sl---afSPD----G~~LasGs~----------DG~ 415 (1491)
.|++.|..+.+.+..+.++ ....+.++ .|..+ -.+|++|+. .|.
T Consensus 3 ~i~l~d~~~~~~~~~~~l~-------------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr 63 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELE-------------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR 63 (321)
T ss_dssp EEEEEETTTSSEEEEEEEE-------------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred EEEEEeCCCCeEEEEEECC-------------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE
Confidence 5778887777766665443 22334433 34332 467777753 289
Q ss_pred EEEEeCCCCCCCCCCCCCceeee--ecCCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeE
Q 000454 416 ARVWNACKPNTDDSDQPNHEIDV--LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSA 493 (1491)
Q Consensus 416 IrVWDl~t~~~~~s~~~~~~i~~--l~gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtI 493 (1491)
|.+|++... ......+.. -....++|++++... ..|+ ++..+.|
T Consensus 64 i~v~~i~~~-----~~~~~~l~~i~~~~~~g~V~ai~~~~----------------------------~~lv-~~~g~~l 109 (321)
T PF03178_consen 64 ILVFEISES-----PENNFKLKLIHSTEVKGPVTAICSFN----------------------------GRLV-VAVGNKL 109 (321)
T ss_dssp EEEEEECSS----------EEEEEEEEEESS-EEEEEEET----------------------------TEEE-EEETTEE
T ss_pred EEEEEEEcc-----cccceEEEEEEEEeecCcceEhhhhC----------------------------CEEE-EeecCEE
Confidence 999999652 000112221 123467788877652 2544 3445899
Q ss_pred EEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCC-C
Q 000454 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD-G 572 (1491)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~t-g 572 (1491)
.+|++...+.... .........+.++.. .+.+|++|.....|.++.... +
T Consensus 110 ~v~~l~~~~~l~~---------------------------~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~ 160 (321)
T PF03178_consen 110 YVYDLDNSKTLLK---------------------------KAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEEN 160 (321)
T ss_dssp EEEEEETTSSEEE---------------------------EEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTT
T ss_pred EEEEccCcccchh---------------------------hheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccC
Confidence 9999886430000 011112224555544 366999999888888775433 3
Q ss_pred ceEEEEe--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-------Cc--e--EEEEeeCCcceEEE---EEcC-
Q 000454 573 SLVHSLT--GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE-------GI--P--IRIYEISRFRLVDG---KFSP- 635 (1491)
Q Consensus 573 kll~tL~--gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t-------Gk--~--l~~l~~h~~~Vtsl---afSP- 635 (1491)
..+..+. .....++++.|-+++ ..++.+..+|.|.++.... +. + +..+. ....|+++ ++.|
T Consensus 161 ~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~ 238 (321)
T PF03178_consen 161 NKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPR 238 (321)
T ss_dssp E-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--
T ss_pred CEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeec
Confidence 3233332 234468888888645 5788899999999998752 22 2 23333 23456666 5555
Q ss_pred -CCC------EEEEEeCCCcEEEE
Q 000454 636 -DGA------SIILSDDVGQLYIL 652 (1491)
Q Consensus 636 -DG~------~LAsgs~DG~I~IW 652 (1491)
.+. .++.++.+|.|.+.
T Consensus 239 ~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 239 SGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCCCcccccceEEEEecCCEEEEE
Confidence 222 47888889998844
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.034 Score=72.38 Aligned_cols=102 Identities=22% Similarity=0.376 Sum_probs=77.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeE-EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEE
Q 000454 254 SGRYVITGSDDRLVKIWSMETAYC-LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTA 332 (1491)
Q Consensus 254 DG~~LATGS~DGtIrIWDl~Tg~~-l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~Vts 332 (1491)
.+..+|.|++.|.|-..|+...-. +..=..-.++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..|..++++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 456788999999999888764311 1111234679999999999999999999999999999999999999888777666
Q ss_pred EEec---CCCCceEEEEEEeCCCcEEEEccC
Q 000454 333 IAFS---PRPGSVYQLLSSSDDGTCRIWDAR 360 (1491)
Q Consensus 333 LaFS---Pdg~s~~~LaSgS~DGtVrIWDl~ 360 (1491)
+-+. .++. .++++...|. +|.+.
T Consensus 178 vi~v~~t~~nS---~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNS---KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeCCCc---EEEEccCCCc--eEEEE
Confidence 6543 3333 6888887776 67654
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=95.20 E-value=1 Score=59.46 Aligned_cols=150 Identities=13% Similarity=0.130 Sum_probs=96.6
Q ss_pred CCEEEEE-ECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCc----eEEEEEEeCCCcEEEEccCCCCccceeecC
Q 000454 297 NALVASA-SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGS----VYQLLSSSDDGTCRIWDARYSQFSPRIYIP 371 (1491)
Q Consensus 297 G~lLASG-S~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s----~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~ 371 (1491)
.++|+.- .....|+-.|+..|+.+..+..|... .-..|.|+.+. ....+.|-.+..|..||.+-.. ...+..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~-~k~v~~- 569 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG-NKLVDS- 569 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCC-Cceeec-
Confidence 3444443 34577899999999999999877643 23344443210 0135667777889999998532 111100
Q ss_pred CCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEE
Q 000454 372 RPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451 (1491)
Q Consensus 372 ~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVaf 451 (1491)
............|++-+.+| +||+|+.+|.||+||--. ......+.+-..+|.+|..
T Consensus 570 -------------~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g---------~~AKT~lp~lG~pI~~iDv 626 (794)
T PF08553_consen 570 -------------QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG---------KRAKTALPGLGDPIIGIDV 626 (794)
T ss_pred -------------cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc---------hhhhhcCCCCCCCeeEEEe
Confidence 00011244567888888777 689999999999999421 2233456677889999999
Q ss_pred ccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecC
Q 000454 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1491)
Q Consensus 452 Spdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~ 499 (1491)
+.+| ..+.+..+..|.+++..
T Consensus 627 t~DG---------------------------kwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 627 TADG---------------------------KWILATCKTYLLLIDTL 647 (794)
T ss_pred cCCC---------------------------cEEEEeecceEEEEEEe
Confidence 9987 44455556778888764
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.9 Score=45.72 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=68.6
Q ss_pred eeEEEEcC---CC-CEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 000454 543 VNMIVWSL---DN-RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 543 VtsVafSP---DG-~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l 618 (1491)
|+++++.. || .-|++|+.|..|+||+- ...+..+.. .+.|++++-.. ...++.+-.+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLG--GGRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcC--CCEEEEEecCCEEEEEeC--ccee
Confidence 45565544 33 47999999999999984 466777664 45577777665 355667889999999975 5556
Q ss_pred EEEeeCCcceEEEEEcC-C--C-CEEEEEeCCCcEEE
Q 000454 619 RIYEISRFRLVDGKFSP-D--G-ASIILSDDVGQLYI 651 (1491)
Q Consensus 619 ~~l~~h~~~VtslafSP-D--G-~~LAsgs~DG~I~I 651 (1491)
+..+..+ .++++++.. + | .-|++|-.+|.|-+
T Consensus 75 WRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 6666333 466665443 3 2 36888888888743
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.19 Score=65.97 Aligned_cols=71 Identities=23% Similarity=0.443 Sum_probs=58.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEE---EcCCCCEEEEEECCCeEEEEEC
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLA---VSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 242 H~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLa---fSPDG~lLASGS~DGtIrVWDl 314 (1491)
-.++|+|++|+.+|++++.|-.+|.|.+||+.+++.++.+..|..+++.+- +..++..++++...|. +|.+
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 457999999999999999999999999999999999999887766655554 4446667888877775 6654
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.46 E-value=26 Score=47.04 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=50.4
Q ss_pred CCCCeEEEEEcCCC------CEEEEEECCCeEEEEECCCCCceeeec--cCCCceEEEEecCCCC------ceEEEEEEe
Q 000454 284 HEGDITDLAVSSNN------ALVASASNDCIIRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPG------SVYQLLSSS 349 (1491)
Q Consensus 284 H~~~VtsLafSPDG------~lLASGS~DGtIrVWDl~tgk~i~~L~--gHs~~VtsLaFSPdg~------s~~~LaSgS 349 (1491)
-...|.|+++.++. ++++.++.|+++++..+.-..++..+. +-..++.++.+-+... ...+|.+|-
T Consensus 581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL 660 (1205)
T KOG1898|consen 581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGL 660 (1205)
T ss_pred eceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecc
Confidence 35678999998865 589999999999999987665555543 4445555555544321 124677888
Q ss_pred CCCcEEEE
Q 000454 350 DDGTCRIW 357 (1491)
Q Consensus 350 ~DGtVrIW 357 (1491)
.+|.+.-+
T Consensus 661 ~NGvllR~ 668 (1205)
T KOG1898|consen 661 RNGVLLRF 668 (1205)
T ss_pred cccEEEEE
Confidence 88876544
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.38 E-value=26 Score=46.74 Aligned_cols=118 Identities=15% Similarity=0.166 Sum_probs=75.9
Q ss_pred CeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEE-eCCCCCeEEEEEecC--CCc---EEEEEeCCCcEEEEe-CCC
Q 000454 542 GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL-TGHTESTYVLDVHPF--NPR---IAMSAGYDGKTIVWD-IWE 614 (1491)
Q Consensus 542 ~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL-~gHs~~VtsLafSPd--d~~---lLaSgS~DGtIrIWD-l~t 614 (1491)
.++..+.+.+...++.++.++.+...++..+.+.... ..-...|.|+.++|. ++. +++.|.++..+.+.- +.+
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd 568 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD 568 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence 4555555666677888888888888888776633222 123457899999975 334 888888776655443 334
Q ss_pred CceEEEEee----CCcceEEEEEcCCCCEEEEEeCCCcEEEE--ECCCCcc
Q 000454 615 GIPIRIYEI----SRFRLVDGKFSPDGASIILSDDVGQLYIL--NTGQGES 659 (1491)
Q Consensus 615 Gk~l~~l~~----h~~~VtslafSPDG~~LAsgs~DG~I~IW--dl~tG~~ 659 (1491)
...+..... -...|.-.+|--|+.+|.++..||.+..| |..+|..
T Consensus 569 ~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 569 LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 443333321 12245566777789999999999988654 5566654
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.35 E-value=8.9 Score=45.66 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=81.5
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEcc-C
Q 000454 282 RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA-R 360 (1491)
Q Consensus 282 ~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl-~ 360 (1491)
..-.+.+..+..++||++++++.....+.-|+--...-...-+.-...|..|.|.|++. |......|.|++=+. .
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~----lw~~~~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN----LWMLARGGQIQFSDDPD 216 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-----EEEEETTTEEEEEE-TT
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC----EEEEeCCcEEEEccCCC
Confidence 34567899999999999999887666667887432222222233467899999999975 444558888888761 1
Q ss_pred CCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeec
Q 000454 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS 440 (1491)
Q Consensus 361 tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~ 440 (1491)
....-..- ..........+..++|.+++...|+|+.. .+ +.....+ ...+......
T Consensus 217 ~~~~w~~~----------------~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgG------ktW~~~~~~~ 272 (302)
T PF14870_consen 217 DGETWSEP----------------IIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGG------KTWQKDRVGE 272 (302)
T ss_dssp EEEEE-------------------B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTT------SS-EE-GGGT
T ss_pred Cccccccc----------------cCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCC------ccceECcccc
Confidence 11100000 00111234558999999998888877654 33 2333222 2233433334
Q ss_pred CCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEE
Q 000454 441 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496 (1491)
Q Consensus 441 gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIW 496 (1491)
.-...++.|.|.+. +.-+..+.+|.|.-|
T Consensus 273 ~~~~n~~~i~f~~~---------------------------~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNP---------------------------DKGFVLGQDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEET---------------------------TEEEEE-STTEEEEE
T ss_pred CCCCceEEEEEcCC---------------------------CceEEECCCcEEEEe
Confidence 44556777877643 356666788887665
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=2.1 Score=55.29 Aligned_cols=66 Identities=9% Similarity=0.093 Sum_probs=40.1
Q ss_pred CCCCEEEEEecc------ceEEEEECCC-Cc--eEEEEeCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCceE
Q 000454 550 LDNRFVLAAIMD------CRICVWNAAD-GS--LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDG--KTIVWDIWEGIPI 618 (1491)
Q Consensus 550 PDG~~LaSGs~D------G~IrIWDl~t-gk--ll~tL~gHs~~VtsLafSPdd~~lLaSgS~DG--tIrIWDl~tGk~l 618 (1491)
-+|+..++|+.+ ..+..||..+ .+ .+..+.........+++ ++++.+.||.|| .+..||+.+.+-.
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEeeecceeehhhcCccccccc
Confidence 357777777654 2467899876 33 33344333333333333 678888999998 6777777665533
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.86 E-value=2.9 Score=48.34 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=67.7
Q ss_pred EEEEEcCCC-CEEEEEeCCCe-EEEEECCCCeEEEEEecCCCC--eEEEEEcCCCCEEEEEECC-----CeEEEEECCCC
Q 000454 247 YCAIFDRSG-RYVITGSDDRL-VKIWSMETAYCLASCRGHEGD--ITDLAVSSNNALVASASND-----CIIRVWRLPDG 317 (1491)
Q Consensus 247 t~VaFSpDG-~~LATGS~DGt-IrIWDl~Tg~~l~tL~gH~~~--VtsLafSPDG~lLASGS~D-----GtIrVWDl~tg 317 (1491)
..|+|+|.- +-++.+-.-|+ ..++|..+++...++...++. .-.=.|||||.+|...-.| |.|-|||...+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 357788854 44566655554 567888887776665422111 1122599999999876443 78999998754
Q ss_pred -CceeeeccCCCceEEEEecCCCCceEEEEEE
Q 000454 318 -LPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348 (1491)
Q Consensus 318 -k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSg 348 (1491)
+.+..+..|.-.-..+.|.+|+. .|+.+
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGr---tlvva 179 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGR---TLVVA 179 (366)
T ss_pred cceecccccCCcCcceeEEecCCc---EEEEe
Confidence 55677888887788999999997 55554
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=93.81 E-value=3.2 Score=48.06 Aligned_cols=170 Identities=9% Similarity=-0.037 Sum_probs=97.5
Q ss_pred cceeEEEEccCC-CCEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEECCC
Q 000454 232 KMQNIKRVRGHR-NAVYCAIFDRSGRYVITGSDDR--LVKIWSMETAYCLASCRGHE-GDITDLAVSSNNALVASASNDC 307 (1491)
Q Consensus 232 t~k~v~tL~GH~-~~Vt~VaFSpDG~~LATGS~DG--tIrIWDl~Tg~~l~tL~gH~-~~VtsLafSPDG~lLASGS~DG 307 (1491)
.++.++++.... .-...+.|..+|.++-+.+.-| .|+.+|+.+|+.+....-.. ----.|++.. +++..-.=.++
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~ 110 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCC
Confidence 355666665322 3456788878888888887766 79999999999876654221 1122333332 23333334578
Q ss_pred eEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCC
Q 000454 308 IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1491)
Q Consensus 308 tIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s 387 (1491)
...+||..+.+.+..+. ..+.=+.++ .++. .|+.......|.++|..+-+....+.+.....
T Consensus 111 ~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~---~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~------------ 172 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGK---RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR------------ 172 (264)
T ss_dssp EEEEEETTTTEEEEEEE--SSS--EEE--ECSS---CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE------------
T ss_pred eEEEEccccceEEEEEe-cCCcceEEE--cCCC---EEEEECCccceEEECCcccceEEEEEEEECCE------------
Confidence 99999999988888876 334556777 3444 57777777889999998877666664421110
Q ss_pred CCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCC
Q 000454 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKP 424 (1491)
Q Consensus 388 ~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~ 424 (1491)
.-..++-+.|- +|.+.|-.-....|...|..++
T Consensus 173 ---pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 173 ---PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp ---E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-
T ss_pred ---ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC
Confidence 11234445553 5555554444455555566553
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.71 E-value=3.4 Score=48.11 Aligned_cols=163 Identities=9% Similarity=0.076 Sum_probs=100.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCceee
Q 000454 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETA--YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1491)
Q Consensus 245 ~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg--~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i~~ 322 (1491)
.+.|+-|...+.+...++.. +-+|...=. -..+.+.|-...|.++.|+|+.+.|++......-.||=...|..+.+
T Consensus 45 ~f~~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt 122 (316)
T COG3204 45 VFPCAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT 122 (316)
T ss_pred eeeeEEEeccccccccccch--hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEE
Confidence 34444454444444444444 444543211 11122345566699999999999999998888888887788988877
Q ss_pred ecc-CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEEC
Q 000454 323 LRG-HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401 (1491)
Q Consensus 323 L~g-Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafS 401 (1491)
+.- .-...-.|.+..++. +.++--.++.+.++.+........+... ..+.......+...-.++|.
T Consensus 123 iPL~g~~DpE~Ieyig~n~---fvi~dER~~~l~~~~vd~~t~~~~~~~~----------~i~L~~~~k~N~GfEGlA~d 189 (316)
T COG3204 123 IPLTGFSDPETIEYIGGNQ---FVIVDERDRALYLFTVDADTTVISAKVQ----------KIPLGTTNKKNKGFEGLAWD 189 (316)
T ss_pred ecccccCChhHeEEecCCE---EEEEehhcceEEEEEEcCCccEEeccce----------EEeccccCCCCcCceeeecC
Confidence 652 123345677777765 6667777888888777655322222110 00001111125667889999
Q ss_pred CCCCEEEEecCCceEEEEeCC
Q 000454 402 ANGTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 402 PDG~~LasGs~DG~IrVWDl~ 422 (1491)
|....|.++-.-.-+.||.+.
T Consensus 190 ~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 190 PVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred CCCceEEEEEccCCcEEEEEe
Confidence 988888888777777777664
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.66 E-value=2.9 Score=55.67 Aligned_cols=146 Identities=8% Similarity=-0.035 Sum_probs=86.5
Q ss_pred CcceEEEEECCCCCEEEEec--CCceEEEEeCCCCCCCCCCC--CCceeeeecCCCCCceEEEEccCccccccccccCCC
Q 000454 392 SHQIFCCAFNANGTVFVTGS--SDTLARVWNACKPNTDDSDQ--PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1491)
Q Consensus 392 ~~~V~slafSPDG~~LasGs--~DG~IrVWDl~t~~~~~s~~--~~~~i~~l~gH~~~V~sVafSpdg~as~~s~~~~~~ 467 (1491)
...|..+...+|+.+.++.. .+-.|.+||+++-....... +.............+.++.|.|.-
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v------------ 167 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV------------ 167 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc------------
Confidence 34566677778877655543 34478999997532211111 111111111223344566676653
Q ss_pred CCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCceeccCCCCCeeEEE
Q 000454 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1491)
Q Consensus 468 ~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsVa 547 (1491)
...++.+..|+.|++..+.... ...........+++++
T Consensus 168 -------------p~n~av~l~dlsl~V~~~~~~~-----------------------------~~v~s~p~t~~~Tav~ 205 (1405)
T KOG3630|consen 168 -------------PLNSAVDLSDLSLRVKSTKQLA-----------------------------QNVTSFPVTNSQTAVL 205 (1405)
T ss_pred -------------cchhhhhccccchhhhhhhhhh-----------------------------hhhcccCcccceeeEE
Confidence 2467778888888887554211 0011123345689999
Q ss_pred EcCCCCEEEEEeccceEEEEECCCCceEEEEeCC----CCCeEEEEEec
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH----TESTYVLDVHP 592 (1491)
Q Consensus 548 fSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH----s~~VtsLafSP 592 (1491)
|+|.|+.+++|-..|++.-|-. +++....+.+. ...|.+|+|-.
T Consensus 206 WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 206 WSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred eccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEec
Confidence 9999999999999999988875 34433433221 35788999976
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=93.55 E-value=3.1 Score=49.40 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=79.6
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCC
Q 000454 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP-DGL 318 (1491)
Q Consensus 240 ~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~-tgk 318 (1491)
.+-.+.+..+..++||++||+++......-|+--...-...-+.-...|..|.|.|++.+.+.+ ..|.|++=+.. .+.
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3445789999999999999999887777788854222222223356889999999998766654 88888887621 111
Q ss_pred ----ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 319 ----PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 319 ----~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
.+..+..-.-.+..++|.+++. +.+++..|++.+ ..+.|+.-.... ........
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~----~wa~gg~G~l~~-S~DgGktW~~~~-----------------~~~~~~~n 277 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNE----IWAVGGSGTLLV-STDGGKTWQKDR-----------------VGENVPSN 277 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-----EEEEESTT-EEE-ESSTTSS-EE-G-----------------GGTTSSS-
T ss_pred ccccccCCcccCceeeEEEEecCCCC----EEEEeCCccEEE-eCCCCccceECc-----------------cccCCCCc
Confidence 1111222233489999999875 444555564433 333333222211 11123445
Q ss_pred eEEEEECCCCCEEEEecCCceEEEE
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVW 419 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVW 419 (1491)
++.|.|..+.+-+|.| .+|.|.-|
T Consensus 278 ~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 278 LYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp --EEEEEETTEEEEE--STTEEEEE
T ss_pred eEEEEEcCCCceEEEC-CCcEEEEe
Confidence 7888887666656655 46766544
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.52 E-value=22 Score=42.88 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=56.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE---EEEE----ecCCCCeEEEEEcCC----CCEEEEEECC--------
Q 000454 246 VYCAIFDRSGRYVITGSDDRLVKIWSMETAYC---LASC----RGHEGDITDLAVSSN----NALVASASND-------- 306 (1491)
Q Consensus 246 Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~---l~tL----~gH~~~VtsLafSPD----G~lLASGS~D-------- 306 (1491)
-+.|+|.|||+++++ -..|.|++++ ..+.. +..+ .........|+|+|+ +.+.++.+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 478999999988776 4599999999 55554 3333 134567899999994 4333333321
Q ss_pred CeEEEEECCCC-------Cce-eeecc---CCCceEEEEecCCCCceEEEEEEeCCC
Q 000454 307 CIIRVWRLPDG-------LPI-SVLRG---HTAAVTAIAFSPRPGSVYQLLSSSDDG 352 (1491)
Q Consensus 307 GtIrVWDl~tg-------k~i-~~L~g---Hs~~VtsLaFSPdg~s~~~LaSgS~DG 352 (1491)
..|.-|.+..+ +.+ ..+.. .......|+|.|++. ++++.+..+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~---LYvs~G~~~ 135 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK---LYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE---EEEEEB-TT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc---EEEEeCCCC
Confidence 23444444333 111 11111 234456799999985 555555444
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.49 E-value=2.3 Score=49.29 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=90.4
Q ss_pred CEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE-CCCCCc
Q 000454 245 AVYCAIFDRSGRYVITGS---DDRLVKIWSMETAYCLAS-CRGHEGDITDLAVSSNNALVASASNDCIIRVWR-LPDGLP 319 (1491)
Q Consensus 245 ~Vt~VaFSpDG~~LATGS---~DGtIrIWDl~Tg~~l~t-L~gH~~~VtsLafSPDG~lLASGS~DGtIrVWD-l~tgk~ 319 (1491)
.+...+++++|..+|... ....+.++... ..... +.+ ..+..-.|++++...+....+...+++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999999887765 33455555543 32222 233 3788889999987777666666677774 333432
Q ss_pred ee-eec--cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCcc--ceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 320 IS-VLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFS--PRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 320 i~-~L~--gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~--~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
.. .+. .-.+.|+.+.++||+....+++....++.|.+--+....-- ..+. .+..........
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~-------------~~~~~~~~~~~~ 167 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLT-------------GPRRVAPPLLSD 167 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceec-------------cceEecccccCc
Confidence 21 111 11128999999999983323333334577776654322111 1110 001111223567
Q ss_pred eEEEEECCCCCEEEEecCCc
Q 000454 395 IFCCAFNANGTVFVTGSSDT 414 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG 414 (1491)
+..++|.+++.+++.+...+
T Consensus 168 v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred ceeeeecCCCEEEEEeCCCC
Confidence 89999999998877766543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=3.4 Score=53.45 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=22.6
Q ss_pred CCCEEEEEeccc--eEEEEECCCCceEEEEeCCC
Q 000454 551 DNRFVLAAIMDC--RICVWNAADGSLVHSLTGHT 582 (1491)
Q Consensus 551 DG~~LaSGs~DG--~IrIWDl~tgkll~tL~gHs 582 (1491)
+|+..++|+.++ .+..||..+.+-...-..|.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 788888999888 67788887765544444444
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.37 E-value=11 Score=42.60 Aligned_cols=46 Identities=7% Similarity=0.038 Sum_probs=41.3
Q ss_pred EEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCCCCCeEEEEEe
Q 000454 546 IVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 591 (1491)
Q Consensus 546 VafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gHs~~VtsLafS 591 (1491)
+++..+|.+.++.-..++|..+|..+|+.+.++.-....|++++|-
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 5557789888888889999999999999999999889999999995
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.25 E-value=2.6 Score=52.16 Aligned_cols=152 Identities=12% Similarity=0.150 Sum_probs=99.2
Q ss_pred CCCEE-EEEECCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceE----EEEEEeCCCcEEEEccCCCCccceeec
Q 000454 296 NNALV-ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY----QLLSSSDDGTCRIWDARYSQFSPRIYI 370 (1491)
Q Consensus 296 DG~lL-ASGS~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~----~LaSgS~DGtVrIWDl~tg~~~~~i~~ 370 (1491)
+.++| .++.....|+-.|++.|+.+..+.-+.. |.-+.+.|+.+... .-+.|-.+..|+-||.+-.... .+..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeee
Confidence 34444 4455556688889999999999987766 88888888865221 1244566778999998732211 1110
Q ss_pred CCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEE
Q 000454 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450 (1491)
Q Consensus 371 ~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVa 450 (1491)
... ..........|++-..+| +||+|+.+|.|++||--. ...-..+++-..+|..|.
T Consensus 422 ~q~-------------kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~---------~~AKTAlPgLG~~I~hVd 478 (644)
T KOG2395|consen 422 VQS-------------KQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIG---------RRAKTALPGLGDAIKHVD 478 (644)
T ss_pred eec-------------cccccccccceeeecCCc-eEEEeecCCcEEeehhhh---------hhhhhcccccCCceeeEE
Confidence 000 011133446677776666 799999999999999721 223345677788999999
Q ss_pred EccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecC
Q 000454 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1491)
Q Consensus 451 fSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~ 499 (1491)
.+.+| ..+.|..+..+.+.++.
T Consensus 479 vtadG---------------------------Kwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 479 VTADG---------------------------KWILATCKTYLLLIDTL 500 (644)
T ss_pred eeccC---------------------------cEEEEecccEEEEEEEe
Confidence 98876 45556667777777654
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.17 Score=56.42 Aligned_cols=103 Identities=17% Similarity=0.079 Sum_probs=67.5
Q ss_pred CeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCCCCCCCCCCCCCCcee-ccCCCCCeeEEEEcCCCCEEEEEec
Q 000454 482 DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQR-ILPTPRGVNMIVWSLDNRFVLAAIM 560 (1491)
Q Consensus 482 ~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-l~~h~~~VtsVafSPDG~~LaSGs~ 560 (1491)
..+++|+.+|.|.+|....... .... ........+.|.--.++.+..+++.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~----------------------------~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~ 122 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGA----------------------------HSDRVCSGEESIDLGIPNGRDSSLGCVGAQ 122 (238)
T ss_pred ceEEeecccceEEEecCCccch----------------------------HHHhhhcccccceeccccccccceeEEecc
Confidence 5799999999999997662110 0000 0111222334444456678899999
Q ss_pred cceEEEEECCCCceEEEEeCCC-CCeEEEEEecCCCcEEEEE--eCCCcEEEEeCC
Q 000454 561 DCRICVWNAADGSLVHSLTGHT-ESTYVLDVHPFNPRIAMSA--GYDGKTIVWDIW 613 (1491)
Q Consensus 561 DG~IrIWDl~tgkll~tL~gHs-~~VtsLafSPdd~~lLaSg--S~DGtIrIWDl~ 613 (1491)
+|.|+.|++.-.+.+.....|. .++..+..+. ..++++.+ |.|..++.|++.
T Consensus 123 dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 123 DGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred CCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchh
Confidence 9999999999888888777777 4444444444 45566666 677777777764
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.05 E-value=1 Score=59.76 Aligned_cols=142 Identities=11% Similarity=-0.029 Sum_probs=90.1
Q ss_pred CCeeEEEEcCCCCEEEEEe--ccceEEEEECCCCceEE-----EEeCC------CCCeEEEEEecCCCcEEEEEeCCCcE
Q 000454 541 RGVNMIVWSLDNRFVLAAI--MDCRICVWNAADGSLVH-----SLTGH------TESTYVLDVHPFNPRIAMSAGYDGKT 607 (1491)
Q Consensus 541 ~~VtsVafSPDG~~LaSGs--~DG~IrIWDl~tgkll~-----tL~gH------s~~VtsLafSPdd~~lLaSgS~DGtI 607 (1491)
-.+..++..+|+...++.. .+-.|++||+.+...-. -|..| ..-..++.|.|.-....+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3456666777877665543 34479999987532211 11112 23356788988666677778889999
Q ss_pred EEEeCCCCc-eEEEEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--cccc-------cccceeeecCCCcceE
Q 000454 608 IVWDIWEGI-PIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQG--ESQK-------DAKYDQFFLGDYRPLV 677 (1491)
Q Consensus 608 rIWDl~tGk-~l~~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG--~~~~-------~~~~~~~fs~D~r~La 677 (1491)
+|..+.... .+..+. ....+++++|+|.|+.+++|...|++.-|...-- ..+. ..+..+.|...+..|+
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 998875432 222322 3346889999999999999999999988865322 1111 1223456777777776
Q ss_pred EccCCC
Q 000454 678 QDTYGN 683 (1491)
Q Consensus 678 ~d~~G~ 683 (1491)
+-.++.
T Consensus 260 vy~n~t 265 (1405)
T KOG3630|consen 260 VYGNVT 265 (1405)
T ss_pred Eecccc
Confidence 555444
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.89 E-value=4.4 Score=52.54 Aligned_cols=63 Identities=13% Similarity=0.234 Sum_probs=37.4
Q ss_pred CCCCEEEEEeccce-----EEEEECCCCceEEE--EeCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEeCCCC
Q 000454 550 LDNRFVLAAIMDCR-----ICVWNAADGSLVHS--LTGHTESTYVLDVHPFNPRIAMSAGYDG-----KTIVWDIWEG 615 (1491)
Q Consensus 550 PDG~~LaSGs~DG~-----IrIWDl~tgkll~t--L~gHs~~VtsLafSPdd~~lLaSgS~DG-----tIrIWDl~tG 615 (1491)
-++.+.++|+.|+. |..||..+.+.... +......+..+ ..++.+.+.||.|| +|..||..+.
T Consensus 474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~---~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV---VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE---EECCEEEEEecccCccccceeEEcCCCCC
Confidence 46778888887763 77788876554332 22222222222 23678888898876 4556665443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.88 E-value=9.1 Score=44.79 Aligned_cols=171 Identities=11% Similarity=0.136 Sum_probs=113.2
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 000454 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG-HEGDITDLAVSSNNALVASASNDCIIRVWRLPDG 317 (1491)
Q Consensus 239 L~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~g-H~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tg 317 (1491)
+.|-...|.++.|+|+.+.|++......-.||=...|..+.++.- .-...-.|.+..+|++.++-=.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 445556699999999999999988888888888888999988752 1334567788888888888777889988887655
Q ss_pred Cceeeec---------cC-CCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCC
Q 000454 318 LPISVLR---------GH-TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1491)
Q Consensus 318 k~i~~L~---------gH-s~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s 387 (1491)
..+..+. .+ ....-.++|.|... .|+.+-.-.-+.||.+..+......... ..+...
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~---~l~~aKEr~P~~I~~~~~~~~~l~~~~~----------~~~~~~ 227 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH---RLFVAKERNPIGIFEVTQSPSSLSVHAS----------LDPTAD 227 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCc---eEEEEEccCCcEEEEEecCCcccccccc----------cCcccc
Confidence 3222111 12 45677899999987 7888888888888877633211111000 000000
Q ss_pred CCCCCcceEEEEECC-CCCEEEEecCCceEEEEeCC
Q 000454 388 AGPQSHQIFCCAFNA-NGTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 388 ~~~h~~~V~slafSP-DG~~LasGs~DG~IrVWDl~ 422 (1491)
..-.-..|..+.|++ .+.+|+-+..++.+.-.|..
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 111233466788886 45666777777777777764
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=92.86 E-value=16 Score=48.45 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=55.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECC----------CCCce---eee--------ccCCCceEEEEecCCCCceE
Q 000454 285 EGDITDLAVSSNNALVASASNDCIIRVWRLP----------DGLPI---SVL--------RGHTAAVTAIAFSPRPGSVY 343 (1491)
Q Consensus 285 ~~~VtsLafSPDG~lLASGS~DGtIrVWDl~----------tgk~i---~~L--------~gHs~~VtsLaFSPdg~s~~ 343 (1491)
.-.|..|.++|+|++||..|..|. .|-.+. .|+.. +++ ..+...|..+.|+|.+....
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 347889999999999999988764 443332 12111 111 13456889999999864334
Q ss_pred EEEEEeCCCcEEEEccCCCCcc
Q 000454 344 QLLSSSDDGTCRIWDARYSQFS 365 (1491)
Q Consensus 344 ~LaSgS~DGtVrIWDl~tg~~~ 365 (1491)
.|+.-..|+++++||+......
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred eEEEEecCCEEEEEecCCCCCC
Confidence 8899999999999999765433
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.28 Score=54.83 Aligned_cols=104 Identities=11% Similarity=-0.010 Sum_probs=64.0
Q ss_pred CCEEEEEeccceEEEEECCC-CceEEEEeCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeeCC-cceE
Q 000454 552 NRFVLAAIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR-FRLV 629 (1491)
Q Consensus 552 G~~LaSGs~DG~IrIWDl~t-gkll~tL~gHs~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~~l~~h~-~~Vt 629 (1491)
+..+++|+.+|.|++|...- |.....+..-...|-++-..-.++.+..+++.||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 46789999999999998752 111111112222333333222344588899999999999998888877776665 3444
Q ss_pred EEEEcCCCCEEEEE--eCCCcEEEEECC
Q 000454 630 DGKFSPDGASIILS--DDVGQLYILNTG 655 (1491)
Q Consensus 630 slafSPDG~~LAsg--s~DG~I~IWdl~ 655 (1491)
.+..+..+++|+++ +.+..+..|++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 44444455555554 555555555553
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=92.46 E-value=24 Score=40.87 Aligned_cols=146 Identities=17% Similarity=0.111 Sum_probs=82.2
Q ss_pred CeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEc-cCCC
Q 000454 287 DITDLAVSSNNALVASAS---NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD-ARYS 362 (1491)
Q Consensus 287 ~VtsLafSPDG~lLASGS---~DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWD-l~tg 362 (1491)
.+.+.+++++++.+|... ....+.++. .+.....+. ....+..-.|.+++. ..+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~---~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGW---VWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCC---EEEEEcCCCceEEEEecCCC
Confidence 789999999999887766 234455554 333333322 223788889999965 445545555566663 2333
Q ss_pred CccceeecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEec---CCceEEEEeCCCCCCCCCCCCCceeeee
Q 000454 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS---SDTLARVWNACKPNTDDSDQPNHEIDVL 439 (1491)
Q Consensus 363 ~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs---~DG~IrVWDl~t~~~~~s~~~~~~i~~l 439 (1491)
...... +. .......|..+.+||||..+|.-. .++.|.|--+..............+...
T Consensus 99 ~~~~~~-v~----------------~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 99 TGEPVE-VD----------------WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred cceeEE-ec----------------ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 221111 00 000111799999999999877654 3577777655322111000111222333
Q ss_pred cCCCCCceEEEEccCc
Q 000454 440 SGHENDVNYVQFSGCA 455 (1491)
Q Consensus 440 ~gH~~~V~sVafSpdg 455 (1491)
......+..+.|.++.
T Consensus 162 ~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 162 PPLLSDVTDVAWSDDS 177 (253)
T ss_pred ccccCcceeeeecCCC
Confidence 3445678899998875
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.40 E-value=6 Score=51.31 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=55.0
Q ss_pred CCCCEEEEEeccc------eEEEEECCCCceEE--EEeCCCCCeEEEEEecCCCcEEEEEeCCCc-----EEEEeCCCCc
Q 000454 550 LDNRFVLAAIMDC------RICVWNAADGSLVH--SLTGHTESTYVLDVHPFNPRIAMSAGYDGK-----TIVWDIWEGI 616 (1491)
Q Consensus 550 PDG~~LaSGs~DG------~IrIWDl~tgkll~--tL~gHs~~VtsLafSPdd~~lLaSgS~DGt-----IrIWDl~tGk 616 (1491)
-+|.+.++|+.++ .+..||..+..... .+..-..... ++. .++.+.+.||.|+. |..||..+.+
T Consensus 426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV--LNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE--ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 4778888887554 47788877654332 2211111111 222 26788888998873 6778876654
Q ss_pred eEEE--EeeCCcceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Q 000454 617 PIRI--YEISRFRLVDGKFSPDGASIILSDDVG-----QLYILNTGQG 657 (1491)
Q Consensus 617 ~l~~--l~~h~~~VtslafSPDG~~LAsgs~DG-----~I~IWdl~tG 657 (1491)
-... +......+. ...-+++..|+|+.+| +|..||..+.
T Consensus 503 W~~v~~m~~~rs~~g--~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 503 WTMVAPMTSPRSAVG--VVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred eeEcccCcccccccc--EEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 3332 221111111 1233566667777665 4555554444
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=92.29 E-value=20 Score=47.74 Aligned_cols=90 Identities=7% Similarity=0.092 Sum_probs=56.2
Q ss_pred CCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCc---eee--------eecCCCCCceEEEEccCccccc
Q 000454 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH---EID--------VLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 391 h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~---~i~--------~l~gH~~~V~sVafSpdg~as~ 459 (1491)
....|..+.++|+|.+||..|..|.+.+.=.+..........+. ... ....+...|..+.|+|.+.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~--- 159 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE--- 159 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC---
Confidence 44579999999999999998887654443322111000000000 000 0123455788889988751
Q ss_pred cccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCC
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 503 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~ 503 (1491)
.+..|+.-..|+++++||+.....
T Consensus 160 --------------------~~~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 160 --------------------SDSHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred --------------------CCCeEEEEecCCEEEEEecCCCCC
Confidence 246899999999999999976443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=91.74 E-value=19 Score=48.28 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=65.6
Q ss_pred cceEEEEECCCCceEEEEeCC---------CCC--------e-EEEEEecCCCcEEEEE-----------------eCCC
Q 000454 561 DCRICVWNAADGSLVHSLTGH---------TES--------T-YVLDVHPFNPRIAMSA-----------------GYDG 605 (1491)
Q Consensus 561 DG~IrIWDl~tgkll~tL~gH---------s~~--------V-tsLafSPdd~~lLaSg-----------------S~DG 605 (1491)
+|.|+-+|+.+|+++..+..- .+. + ..+++.|..+.+++-. -..+
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS 414 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence 688999999999998876421 011 1 1223333222222110 1246
Q ss_pred cEEEEeCCCCceEEEEeeCCcceEE---------EEEcC-CCC---EEEEEeCCCcEEEEECCCCcccccc
Q 000454 606 KTIVWDIWEGIPIRIYEISRFRLVD---------GKFSP-DGA---SIILSDDVGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 606 tIrIWDl~tGk~l~~l~~h~~~Vts---------lafSP-DG~---~LAsgs~DG~I~IWdl~tG~~~~~~ 663 (1491)
.|.-.|+.+|+....++..+..+++ +.+.. +|+ .|+.++.+|.++++|-.+|+.+...
T Consensus 415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 7888899999999999864332222 22333 664 7888999999999999999876543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=10 Score=45.86 Aligned_cols=153 Identities=13% Similarity=0.080 Sum_probs=87.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEE-EEECCCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCce
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVK-IWSMETAYCLASC-RGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIr-IWDl~Tg~~l~tL-~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i 320 (1491)
.+.++++.+.+++.+++++.. |.+. .++ ..++....+ .+-...++++++.++++.++++ ..|.+++=....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 457899999999988777654 5443 222 122222222 2345689999999999877765 4676654233444332
Q ss_pred eeecc----CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceE
Q 000454 321 SVLRG----HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIF 396 (1491)
Q Consensus 321 ~~L~g----Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~ 396 (1491)
..... -...+.++.|.+++. ++.++.+|.|.. ....++.-..+. .........+
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~----~~~~G~~G~v~~-S~d~G~tW~~~~-----------------~~~~~~~~~~ 306 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGE----IWAGGGNGTLLV-SKDGGKTWEKDP-----------------VGEEVPSNFY 306 (334)
T ss_pred ccccCCccccccceeeEEEcCCCC----EEEEcCCCeEEE-eCCCCCCCeECC-----------------cCCCCCcceE
Confidence 22111 124578899998764 566667775543 333333211110 0011223577
Q ss_pred EEEECCCCCEEEEecCCceEEEEeC
Q 000454 397 CCAFNANGTVFVTGSSDTLARVWNA 421 (1491)
Q Consensus 397 slafSPDG~~LasGs~DG~IrVWDl 421 (1491)
.+.|..++..+++| ..|.|..|+-
T Consensus 307 ~~~~~~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 307 KIVFLDPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred EEEEeCCCceEEEC-CCceEEEecC
Confidence 78887777666654 5777776653
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.7 Score=39.41 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE
Q 000454 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC 277 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~ 277 (1491)
...|.+++|+|...+||.|..+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999999999999999999998 5554
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=90.26 E-value=10 Score=43.99 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=78.0
Q ss_pred eeEEEEcCCCCEEEEEeccc--eEEEEECCCCceEEEEeCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE
Q 000454 543 VNMIVWSLDNRFVLAAIMDC--RICVWNAADGSLVHSLTGHTE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619 (1491)
Q Consensus 543 VtsVafSPDG~~LaSGs~DG--~IrIWDl~tgkll~tL~gHs~-~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tGk~l~ 619 (1491)
...+.|..+|.++-+.+.-| .|+.+|+.+|+.+....-... ---.|+.. +.++..-.=.++...+||..+.+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 45677878888888877665 799999999998766543221 11234443 45566566778999999999999999
Q ss_pred EEeeCCcceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 000454 620 IYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGES 659 (1491)
Q Consensus 620 ~l~~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl~tG~~ 659 (1491)
.+... +.=+.++ .||+.|+.++....|+++|..+-+.
T Consensus 125 ~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 125 TFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp EEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred EEecC-CcceEEE--cCCCEEEEECCccceEEECCcccce
Confidence 98743 4455565 6888999999999999999876544
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.9 Score=38.74 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCce
Q 000454 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI 320 (1491)
Q Consensus 285 ~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~i 320 (1491)
...|.+++|+|...+||.|+.+|.|.|+.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 457999999999999999999999999998 55543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.39 E-value=43 Score=43.74 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=40.6
Q ss_pred CCeEEEEECCCCCceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCC
Q 000454 306 DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1491)
Q Consensus 306 DGtIrVWDl~tgk~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~t 361 (1491)
--.|+|+++ +|..+..+.-..+.+..+.|+.+. .|++...+|++.+|++..
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e----eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE----ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc----eEEEEeccceEEEeecch
Confidence 346889886 677776665455588899999986 599999999999999853
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=89.34 E-value=67 Score=40.11 Aligned_cols=145 Identities=16% Similarity=0.183 Sum_probs=88.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe-----EEEEEecCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECCC--CC---
Q 000454 254 SGRYVITGSDDRLVKIWSMETAY-----CLASCRGHEGDITDLAVSS-----NNALVASASNDCIIRVWRLPD--GL--- 318 (1491)
Q Consensus 254 DG~~LATGS~DGtIrIWDl~Tg~-----~l~tL~gH~~~VtsLafSP-----DG~lLASGS~DGtIrVWDl~t--gk--- 318 (1491)
....|++||..|.++||+...+. ++... .-..+|..|..-. +...||. -.-..+.||.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34689999999999999985432 22222 2357888887542 2335555 4456788888731 11
Q ss_pred ----ceeeeccCC--CceEEEEecCCCCc--eEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCC
Q 000454 319 ----PISVLRGHT--AAVTAIAFSPRPGS--VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390 (1491)
Q Consensus 319 ----~i~~L~gHs--~~VtsLaFSPdg~s--~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~ 390 (1491)
.+..+..|. .....+++-|-+.. ..+|++-+.||.+.+++-+.-.+...+ +
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l--p------------------- 172 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL--P------------------- 172 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc--C-------------------
Confidence 122222332 33445555554431 248889999999999987654322221 1
Q ss_pred CCcceEEEEECCCCCEEEEecCCceEEEEeC
Q 000454 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNA 421 (1491)
Q Consensus 391 h~~~V~slafSPDG~~LasGs~DG~IrVWDl 421 (1491)
..--...++|.+.-..|++++.+..|.-|..
T Consensus 173 ~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 173 DFLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 1111335778888888888888888888776
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=89.33 E-value=54 Score=38.94 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=52.2
Q ss_pred cCCCCEEEEEeccceEEEEECCCCceEEEEe--CCCCCeEEEEEec-----CCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 000454 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHP-----FNPRIAMSAGYDGKTIVWDIWEGIPIRIY 621 (1491)
Q Consensus 549 SPDG~~LaSGs~DG~IrIWDl~tgkll~tL~--gHs~~VtsLafSP-----dd~~lLaSgS~DGtIrIWDl~tGk~l~~l 621 (1491)
.++++.=+.|..-|.|-+||+ .|.+++.+. +.-..-+.|+..| ..+.+|+---.||+|.++|..+|+.+..+
T Consensus 209 d~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 209 DADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred CCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence 344444444556678999997 588888873 2333456677655 34567766567999999999999988877
Q ss_pred eeC
Q 000454 622 EIS 624 (1491)
Q Consensus 622 ~~h 624 (1491)
...
T Consensus 288 ~~~ 290 (336)
T TIGR03118 288 LDP 290 (336)
T ss_pred cCC
Confidence 643
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=89.04 E-value=7.3 Score=47.99 Aligned_cols=172 Identities=11% Similarity=0.090 Sum_probs=84.7
Q ss_pred cCCCCEEEEEe------CCCeEEEEECCCCeEEEEEecC---CCCeEEEEEcCCCCEEEEEEC-----------------
Q 000454 252 DRSGRYVITGS------DDRLVKIWSMETAYCLASCRGH---EGDITDLAVSSNNALVASASN----------------- 305 (1491)
Q Consensus 252 SpDG~~LATGS------~DGtIrIWDl~Tg~~l~tL~gH---~~~VtsLafSPDG~lLASGS~----------------- 305 (1491)
-|+|++++++- .-|-+.+.|-++...+...... ..--.++-|.|.-+.++|...
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 46898888762 2357888998888887776532 334567788888888888642
Q ss_pred ---CCeEEEEECCCCCceeeeccCC--CceEEEEecCCCCceEEEEEEeCCCcEEEEcc-CCCCccceeecCCCCCcccC
Q 000454 306 ---DCIIRVWRLPDGLPISVLRGHT--AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA-RYSQFSPRIYIPRPSDAVAG 379 (1491)
Q Consensus 306 ---DGtIrVWDl~tgk~i~~L~gHs--~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl-~tg~~~~~i~~~~~~~~~~g 379 (1491)
..++.+||+.+.+.++++.--. ..+..|.|..+.....-++.+.-.+.|..|-- ..+.......+..+...+.+
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 3579999999999998886332 35678888777654445555555556655533 44433222211111111111
Q ss_pred CCCCC-CCCCCCCCcceEEEEECCCCCEEEEec-CCceEEEEeCCC
Q 000454 380 RNMAP-SSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACK 423 (1491)
Q Consensus 380 ~~~~~-~~s~~~h~~~V~slafSPDG~~LasGs-~DG~IrVWDl~t 423 (1491)
..... ......-..-|+.|.+|.|.++|.+.+ ..|.|+.||+..
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 10000 001111245689999999999887765 589999999965
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=89.01 E-value=25 Score=43.54 Aligned_cols=149 Identities=12% Similarity=0.101 Sum_probs=87.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCCc--
Q 000454 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC--LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP-- 319 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~--l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~tgk~-- 319 (1491)
+....+..++||.+++.|.....++-||- |.. ...-......++.+.|.+++.+++++ ..|. .+|....+..
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~-l~~S~d~G~~~~ 314 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGG-LYVSKGTGLTEE 314 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCce-EEEecCCCCccc
Confidence 34566778899998888766544444553 322 11112345678999999999888766 5555 3444445532
Q ss_pred ---eeeecc--CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcc
Q 000454 320 ---ISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394 (1491)
Q Consensus 320 ---i~~L~g--Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~ 394 (1491)
...+.. -...++++.|.+++. ++.++..|.|.... ..++.-.... ....-...
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~----~~a~G~~G~v~~s~-D~G~tW~~~~-----------------~~~~~~~~ 372 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKE----AWAAGGSGILLRST-DGGKSWKRDK-----------------GADNIAAN 372 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCc----EEEEECCCcEEEeC-CCCcceeEcc-----------------ccCCCCcc
Confidence 222221 123589999998874 77777888777654 3332211110 01112345
Q ss_pred eEEEEECCCCCEEEEecCCceEEEE
Q 000454 395 IFCCAFNANGTVFVTGSSDTLARVW 419 (1491)
Q Consensus 395 V~slafSPDG~~LasGs~DG~IrVW 419 (1491)
++.+.|.++++.+++| .+|.|.-|
T Consensus 373 ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 373 LYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred eeEEEEcCCCceEEEe-CCcEEEEe
Confidence 7889998877766665 46666544
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=88.09 E-value=6.3 Score=49.73 Aligned_cols=120 Identities=15% Similarity=0.148 Sum_probs=71.0
Q ss_pred cCCCCCeeEEEEcCCC----CEEEEEeccceEEEEECC-----CCceEEEEeCCC-C--C--eEEEEEecCCCcEEEEEe
Q 000454 537 LPTPRGVNMIVWSLDN----RFVLAAIMDCRICVWNAA-----DGSLVHSLTGHT-E--S--TYVLDVHPFNPRIAMSAG 602 (1491)
Q Consensus 537 ~~h~~~VtsVafSPDG----~~LaSGs~DG~IrIWDl~-----tgkll~tL~gHs-~--~--VtsLafSPdd~~lLaSgS 602 (1491)
.+.-..|..++|.|-+ ..|++.-....|.||-+. ..+++..-..+- . + -..+.|||. ..+|+.-.
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT 131 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLT 131 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC-CceEEEEe
Confidence 3444568889999853 244445567789999875 233333222111 1 1 245689994 44444333
Q ss_pred CCCcEEEEeCCC-CceEEEEeeCCcceEEEEEcCCCCEEEEE-eCCCcEEEEECCCC
Q 000454 603 YDGKTIVWDIWE-GIPIRIYEISRFRLVDGKFSPDGASIILS-DDVGQLYILNTGQG 657 (1491)
Q Consensus 603 ~DGtIrIWDl~t-Gk~l~~l~~h~~~VtslafSPDG~~LAsg-s~DG~I~IWdl~tG 657 (1491)
....-.++++.. ...++.--...+-|.|.+|.+||+.|+++ +..=+-+|||-...
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 333334555542 23333323467789999999999999876 44457799996443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=88.01 E-value=8.9 Score=49.76 Aligned_cols=117 Identities=11% Similarity=0.110 Sum_probs=79.0
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEc--CCCCEEEEEECCCeEEEEEC
Q 000454 238 RVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVS--SNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 238 tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~-gH~~~VtsLafS--PDG~lLASGS~DGtIrVWDl 314 (1491)
++..-......+.-|.-++..++-+....+.|||...+.+...-. ...+.|.++.|. |+|+.+++.+..+.|.++.-
T Consensus 24 ~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 24 TFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 343333455555566666666665666789999999887554432 457889999996 58888888889999999853
Q ss_pred C---------CCCceeee--ccCC-CceEEEEecCCCCceEEEEEEeCCCcEEEEcc
Q 000454 315 P---------DGLPISVL--RGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359 (1491)
Q Consensus 315 ~---------tgk~i~~L--~gHs-~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl 359 (1491)
. +..++..+ ..|+ .+|.+..|.++|. |++|+. ..+.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~----LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT----LVVGSG-NQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe----EEEEeC-CEEEEECC
Confidence 2 11233332 3454 6899999999984 555553 45777764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=87.84 E-value=20 Score=47.14 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=72.5
Q ss_pred CCCeeEEEEcC--CCCEEEEEeccceEEEEECCC-------C-------------ceEEEEeCCCCCeEEEEEe--cCCC
Q 000454 540 PRGVNMIVWSL--DNRFVLAAIMDCRICVWNAAD-------G-------------SLVHSLTGHTESTYVLDVH--PFNP 595 (1491)
Q Consensus 540 ~~~VtsVafSP--DG~~LaSGs~DG~IrIWDl~t-------g-------------kll~tL~gHs~~VtsLafS--Pdd~ 595 (1491)
+..|+.|.... +...|+++..||.|.+|.+.+ . ++...+. -...+++|+++ . ..
T Consensus 100 PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~ 177 (717)
T PF08728_consen 100 PHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KS 177 (717)
T ss_pred CceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cc
Confidence 34455554433 456788999999999997632 0 0112222 23367999998 5 56
Q ss_pred cEEEEEeCCCcEEEEeCCCC--ceEE-EEeeCCcceEEEEEcCCC-----C-EEEEEeCCCcEEEEEC
Q 000454 596 RIAMSAGYDGKTIVWDIWEG--IPIR-IYEISRFRLVDGKFSPDG-----A-SIILSDDVGQLYILNT 654 (1491)
Q Consensus 596 ~lLaSgS~DGtIrIWDl~tG--k~l~-~l~~h~~~VtslafSPDG-----~-~LAsgs~DG~I~IWdl 654 (1491)
++||.++....|.||-.... +... .-..+...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888887788888765432 1111 011244467788886643 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.63 E-value=0.93 Score=58.64 Aligned_cols=121 Identities=13% Similarity=0.157 Sum_probs=75.9
Q ss_pred CCEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEE-----------cCCCCEEEEEECCCeE
Q 000454 244 NAVYCAIFDR---SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAV-----------SSNNALVASASNDCII 309 (1491)
Q Consensus 244 ~~Vt~VaFSp---DG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLaf-----------SPDG~lLASGS~DGtI 309 (1491)
..+.-|.|.| ..-++..+-.++.|++..+.+... ..+++|...+.+++| ||||+.+|+++.||.+
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 3344455554 556777777888888877664433 445678887777664 8999999999999999
Q ss_pred EEEECC-----CCCceeeeccCC-CceEEEEecCCC-------CceEEEEEEeCCCcEEEEccCCCCcc
Q 000454 310 RVWRLP-----DGLPISVLRGHT-AAVTAIAFSPRP-------GSVYQLLSSSDDGTCRIWDARYSQFS 365 (1491)
Q Consensus 310 rVWDl~-----tgk~i~~L~gHs-~~VtsLaFSPdg-------~s~~~LaSgS~DGtVrIWDl~tg~~~ 365 (1491)
+.|.+. ..+++..++.|. ++-.|.-|+... ...++|-++..+..+++|.....+|.
T Consensus 260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 988763 234566666676 333333333221 11112333344556888887666655
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.61 E-value=74 Score=38.49 Aligned_cols=110 Identities=13% Similarity=-0.010 Sum_probs=65.6
Q ss_pred CCCeeEEEEcCCCCEEEEEeccceEEEEECCCCceEEEEeCC----CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH----TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 540 ~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tgkll~tL~gH----s~~VtsLafSPdd~~lLaSgS~DGtIrIWDl~tG 615 (1491)
...++++++.++++.+++| ..|.+++=....|..-.....+ ...+..+.+.| .+.+++ ++.+|.|. .....|
T Consensus 214 ~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~-~S~d~G 289 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLL-VSKDGG 289 (334)
T ss_pred cccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEE-EeCCCC
Confidence 3568889999999987766 4566654334444433322211 23478889988 445554 55677554 444444
Q ss_pred ceEEEEe---eCCcceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 000454 616 IPIRIYE---ISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 616 k~l~~l~---~h~~~VtslafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
+.-.... .-....+.+.|..+++.+++| ..|.|..|+-
T Consensus 290 ~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 290 KTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred CCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEEecC
Confidence 4333322 122357788888777766655 4588887764
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.14 E-value=0.17 Score=64.86 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=86.7
Q ss_pred CCeEEEEECCCCC-ceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccC--CCCccceeecCCCCCcccCCCC
Q 000454 306 DCIIRVWRLPDGL-PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR--YSQFSPRIYIPRPSDAVAGRNM 382 (1491)
Q Consensus 306 DGtIrVWDl~tgk-~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~--tg~~~~~i~~~~~~~~~~g~~~ 382 (1491)
.+.|++-+..+.. .-..+++..+.|-.++|-...- . .++ -.-|.+.||++. .|+....+.+..
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~-p-k~~--~~vg~lfVy~vd~l~G~iq~~l~v~~---------- 175 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKC-P-KGR--RLVGELFVYDVDVLQGEIQPQLEVTP---------- 175 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCC-h-HHH--HHhhhhheeehHhhccccccceEEee----------
Confidence 4567777765433 2244567888888888854321 1 222 333678899875 344433332210
Q ss_pred CCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccCcccccccc
Q 000454 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSL 462 (1491)
Q Consensus 383 ~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpdg~as~~s~ 462 (1491)
....+.....|.-+-|-++..++.++-.++.|++..+.+ .....+.+|...+..++|...|+..
T Consensus 176 --~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r----------a~~~l~rsHs~~~~d~a~~~~g~~~---- 239 (1283)
T KOG1916|consen 176 --ITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINR----------ALRSLFRSHSQRVTDMAFFAEGVLK---- 239 (1283)
T ss_pred --cCcCCCCcceeeecccccccceeeeccCCCceeEeeech----------HHHHHHHhcCCCcccHHHHhhchhh----
Confidence 000111112333344445677888888899999887753 2235567799988888877655211
Q ss_pred ccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecC
Q 000454 463 ADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499 (1491)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~ 499 (1491)
+...-.++..|++.+.||.++.|.+.
T Consensus 240 -----------l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 240 -----------LASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred -----------heeeCCCCcEEEEeecCCccceeeee
Confidence 11122334567777777777777543
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=87.12 E-value=13 Score=45.54 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=54.7
Q ss_pred CCEEEEEEcCCCCEEEEEe-----------CCC-eEEEEECCC--CeE--EEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 000454 244 NAVYCAIFDRSGRYVITGS-----------DDR-LVKIWSMET--AYC--LASCRGHEGDITDLAVSSNNALVASASNDC 307 (1491)
Q Consensus 244 ~~Vt~VaFSpDG~~LATGS-----------~DG-tIrIWDl~T--g~~--l~tL~gH~~~VtsLafSPDG~lLASGS~DG 307 (1491)
....+|+|.++|+++++-. ..+ .|.+++-.+ |+. ...+...-.....|+|.++| ++++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCe
Confidence 3457899999999877753 223 777776543 332 23343334456889999988 5554 4443
Q ss_pred eEEEEECCC-C----Cceee---ecc----CCCceEEEEecCCCC
Q 000454 308 IIRVWRLPD-G----LPISV---LRG----HTAAVTAIAFSPRPG 340 (1491)
Q Consensus 308 tIrVWDl~t-g----k~i~~---L~g----Hs~~VtsLaFSPdg~ 340 (1491)
.+++.+... + +.... +.. +......++|.|++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~ 136 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW 136 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC
Confidence 333434421 1 21111 221 234577899999986
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.10 E-value=28 Score=39.54 Aligned_cols=174 Identities=12% Similarity=0.151 Sum_probs=99.2
Q ss_pred EEEEEeCCCeEEEEE--CCCCeEEEEEec-----CCCCeEEEEEcCCCCEEEEEECC---------CeEEEEECCCCCce
Q 000454 257 YVITGSDDRLVKIWS--METAYCLASCRG-----HEGDITDLAVSSNNALVASASND---------CIIRVWRLPDGLPI 320 (1491)
Q Consensus 257 ~LATGS~DGtIrIWD--l~Tg~~l~tL~g-----H~~~VtsLafSPDG~lLASGS~D---------GtIrVWDl~tgk~i 320 (1491)
+.+.++.--.|.=|| .+.....+++.. ......+-..+|+|++.+-.-.| |.++.|-. +..+
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v 150 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQV 150 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCc
Confidence 344444444455577 333344444321 13445566678999985433222 44555543 2233
Q ss_pred eeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEc--cCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEEE
Q 000454 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD--ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1491)
Q Consensus 321 ~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWD--l~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~sl 398 (1491)
..+...-+--..++|..+.+ .+.++-+.+-.|.-|| ..+|....+-.+ ...+...+..... .-.+
T Consensus 151 ~~i~~~v~IsNgl~Wd~d~K--~fY~iDsln~~V~a~dyd~~tG~~snr~~i------~dlrk~~~~e~~~-----PDGm 217 (310)
T KOG4499|consen 151 ELIWNCVGISNGLAWDSDAK--KFYYIDSLNYEVDAYDYDCPTGDLSNRKVI------FDLRKSQPFESLE-----PDGM 217 (310)
T ss_pred eeeehhccCCccccccccCc--EEEEEccCceEEeeeecCCCcccccCccee------EEeccCCCcCCCC-----CCcc
Confidence 33333334456789997765 2445566677787787 666654432211 0111111111111 2234
Q ss_pred EECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCceEEEEccC
Q 000454 399 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 399 afSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sVafSpd 454 (1491)
++..+|++.++.-..++|...|..+ ++.+..+.-....|++++|-..
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~t---------GK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTT---------GKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCC---------CcEEEEEEcCCCceEEEEecCC
Confidence 4566889999888899999999977 5567777777889999999753
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=86.57 E-value=1.3e+02 Score=40.21 Aligned_cols=94 Identities=11% Similarity=0.002 Sum_probs=50.1
Q ss_pred eEEEEECCCCceEEEEeCC-CC-CeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceEEEEe-eCCcceEEEEEc--CC
Q 000454 563 RICVWNAADGSLVHSLTGH-TE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIWE-GIPIRIYE-ISRFRLVDGKFS--PD 636 (1491)
Q Consensus 563 ~IrIWDl~tgkll~tL~gH-s~-~VtsLafSPdd~~lLaSgS~DGtIrIWDl~t-Gk~l~~l~-~h~~~VtslafS--PD 636 (1491)
.|...++........+..+ .. .|..+.+. ...++++...+|.-+++-+.. +..+..+. .....+..+.++ ++
T Consensus 294 ~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 371 (686)
T PRK10115 294 GLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPE 371 (686)
T ss_pred eEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCC
Confidence 3444455421222344444 33 57777776 457888888888766665432 33344443 222233334455 44
Q ss_pred CC-EEEEE---eCCCcEEEEECCCCc
Q 000454 637 GA-SIILS---DDVGQLYILNTGQGE 658 (1491)
Q Consensus 637 G~-~LAsg---s~DG~I~IWdl~tG~ 658 (1491)
+. ++++. ..-+.|+.+|+.+++
T Consensus 372 ~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 372 TSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CceEEEEEecCCCCCEEEEEECCCCc
Confidence 44 44333 235788889987764
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.47 E-value=17 Score=46.66 Aligned_cols=64 Identities=6% Similarity=-0.022 Sum_probs=34.1
Q ss_pred CCCCEEEEEecc------ceEEEEECCCCceEEE--EeCCCCCeEEEEEecCCCcEEEEEeCCC--------cEEEEeCC
Q 000454 550 LDNRFVLAAIMD------CRICVWNAADGSLVHS--LTGHTESTYVLDVHPFNPRIAMSAGYDG--------KTIVWDIW 613 (1491)
Q Consensus 550 PDG~~LaSGs~D------G~IrIWDl~tgkll~t--L~gHs~~VtsLafSPdd~~lLaSgS~DG--------tIrIWDl~ 613 (1491)
-++++++.|+.+ ..+..||..+.+-... +....... +++. - ++.+++.||.++ .+.+||..
T Consensus 388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-H-DGKIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-E-CCEEEEECCccCCCCCcccceEEEecCC
Confidence 356777777632 4588999876543221 11111111 2222 2 556777776432 37888887
Q ss_pred CCc
Q 000454 614 EGI 616 (1491)
Q Consensus 614 tGk 616 (1491)
+++
T Consensus 465 ~~~ 467 (534)
T PHA03098 465 TNK 467 (534)
T ss_pred CCc
Confidence 654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.30 E-value=14 Score=47.29 Aligned_cols=64 Identities=9% Similarity=0.006 Sum_probs=35.3
Q ss_pred CCCCEEEEEeCCC------eEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCC
Q 000454 253 RSGRYVITGSDDR------LVKIWSMETAYCLAS--CRGHEGDITDLAVSSNNALVASASND-----CIIRVWRLPDGL 318 (1491)
Q Consensus 253 pDG~~LATGS~DG------tIrIWDl~Tg~~l~t--L~gH~~~VtsLafSPDG~lLASGS~D-----GtIrVWDl~tgk 318 (1491)
.++..++.|+.++ .+..||..+.+-... +.........+. -++.+++.|+.+ ..+.+||..+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3556677776542 577888876654321 111111222222 257777888765 347778876653
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=86.11 E-value=12 Score=47.25 Aligned_cols=133 Identities=9% Similarity=0.105 Sum_probs=78.7
Q ss_pred CCCCCceEEEEccCccccccccccCCCCCCCccccccccCCCeEEEEeCCCeEEEEecCCCCCCccccccccccccCCCC
Q 000454 441 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520 (1491)
Q Consensus 441 gH~~~V~sVafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LaSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~ 520 (1491)
|.-..|..+.|.|.+... -..+++......|.+|.+...... ...|.....-.+.
T Consensus 54 GqFEhV~GlsW~P~~~~~----------------------~paLLAVQHkkhVtVWqL~~s~~e--~~K~l~sQtcEi~- 108 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTAD----------------------TPALLAVQHKKHVTVWQLCPSTTE--RNKLLMSQTCEIR- 108 (671)
T ss_pred eccceeeeeeecCcccCC----------------------CCceEEEeccceEEEEEeccCccc--cccceeeeeeecc-
Confidence 344568999999875211 125677778889999987632111 1111111000000
Q ss_pred CCCCCCCCCCCCceeccCCCCCeeEEEEcCCCCEEEEEeccceEEEEECCCC--ceEEEEeCCCCCeEEEEEecCCCcEE
Q 000454 521 PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADG--SLVHSLTGHTESTYVLDVHPFNPRIA 598 (1491)
Q Consensus 521 ~~~~~~~~~~~~~~~l~~h~~~VtsVafSPDG~~LaSGs~DG~IrIWDl~tg--kll~tL~gHs~~VtsLafSPdd~~lL 598 (1491)
....--...+.|+|....|++-.....-.++++... +....+ .-.+.|.|.+|.++|.+++
T Consensus 109 ----------------e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 109 ----------------EPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred ----------------CCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEE
Confidence 000011234679999888887665544455555432 222333 3457799999999888888
Q ss_pred EEEeCCCcEEEEeCCCC
Q 000454 599 MSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 599 aSgS~DGtIrIWDl~tG 615 (1491)
++.|..=.-+|||-...
T Consensus 172 VAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEeCCeEEEEEecCchh
Confidence 88887777899996443
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.42 E-value=31 Score=42.89 Aligned_cols=141 Identities=12% Similarity=0.077 Sum_probs=86.0
Q ss_pred CCCCEEE-EEeCCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC--------CEEEEEECCCeEEEEECC-CCCceee
Q 000454 253 RSGRYVI-TGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNN--------ALVASASNDCIIRVWRLP-DGLPISV 322 (1491)
Q Consensus 253 pDG~~LA-TGS~DGtIrIWDl~Tg~~l~tL~gH~~~VtsLafSPDG--------~lLASGS~DGtIrVWDl~-tgk~i~~ 322 (1491)
.|..+|. .|+....+.-.|++.|+.+..+.-|..- -+.|.|+. +.|+-.+.. .|.-.|.+ .|..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~-svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDY-SVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeeccc-ceEEecccccCCceee
Confidence 3444443 4555667777889999999998877654 56777753 245444444 44444543 3433333
Q ss_pred eccCCCceEEEEec-----CCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCcceEE
Q 000454 323 LRGHTAAVTAIAFS-----PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 397 (1491)
Q Consensus 323 L~gHs~~VtsLaFS-----Pdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~~V~s 397 (1491)
.. ....++--.|+ ..| ++++++..|.|++||--.-... ....+.+..|..
T Consensus 554 ~e-sKdY~tKn~Fss~~tTesG----yIa~as~kGDirLyDRig~rAK--------------------talP~lG~aIk~ 608 (776)
T COG5167 554 VE-SKDYKTKNKFSSGMTTESG----YIAAASRKGDIRLYDRIGKRAK--------------------TALPGLGDAIKH 608 (776)
T ss_pred ee-ehhccccccccccccccCc----eEEEecCCCceeeehhhcchhh--------------------hcCcccccceee
Confidence 22 22222222333 333 8999999999999995322211 112335677899
Q ss_pred EEECCCCCEEEEecCCceEEEEeCC
Q 000454 398 CAFNANGTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 398 lafSPDG~~LasGs~DG~IrVWDl~ 422 (1491)
+..+.+|.+|++.+. ..+.+.|+.
T Consensus 609 idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 609 IDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eEeecCCcEEEEeec-ceEEEEecc
Confidence 999999998887664 567777764
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=84.69 E-value=6.3 Score=48.85 Aligned_cols=93 Identities=14% Similarity=0.190 Sum_probs=66.9
Q ss_pred cceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCeEE-EEEc-CC-------------
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITD-LAVS-SN------------- 296 (1491)
Q Consensus 232 t~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL~gH~~~Vts-LafS-PD------------- 296 (1491)
.+.....|....-.+.+|+.+|++++.|+...=|.|.|+|+.++..++.++|..+.=.. +... ..
T Consensus 296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCC
Confidence 34555667777778999999999998888877799999999999998888875443211 1111 11
Q ss_pred ---CC-EEEEEECCCeEEEEECCCCCceeeec
Q 000454 297 ---NA-LVASASNDCIIRVWRLPDGLPISVLR 324 (1491)
Q Consensus 297 ---G~-lLASGS~DGtIrVWDl~tgk~i~~L~ 324 (1491)
.. +++-+-.-|.|-||.+++|..+..+.
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 11 33445668999999999888776665
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=84.65 E-value=95 Score=36.96 Aligned_cols=115 Identities=12% Similarity=0.222 Sum_probs=71.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECC------CC-eEEEEEec-----CCCCeEEEEEcCCCC------------EEE
Q 000454 246 VYCAIFDRSGRYVITGSDDRLVKIWSME------TA-YCLASCRG-----HEGDITDLAVSSNNA------------LVA 301 (1491)
Q Consensus 246 Vt~VaFSpDG~~LATGS~DGtIrIWDl~------Tg-~~l~tL~g-----H~~~VtsLafSPDG~------------lLA 301 (1491)
-+.|+|+|.+.+-++....+...+||.. .. .++-++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4789999999888888888999999986 12 23334432 234678888875333 356
Q ss_pred EEECCCeEEEEECCCCCc-----eeeec-cCCCce-EEEEecCCCCceEEEEEEeCCCcEEEEccC
Q 000454 302 SASNDCIIRVWRLPDGLP-----ISVLR-GHTAAV-TAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360 (1491)
Q Consensus 302 SGS~DGtIrVWDl~tgk~-----i~~L~-gHs~~V-tsLaFSPdg~s~~~LaSgS~DGtVrIWDl~ 360 (1491)
.++.||+|.-|...-+.. ...+. +..+.| ..+++...+...++.++--..++|.|+|-.
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 778999999998543322 11222 122334 456666543222344444567889998754
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.90 E-value=1.8e+02 Score=39.65 Aligned_cols=75 Identities=17% Similarity=0.325 Sum_probs=50.7
Q ss_pred CCCEEEEEEcCCC------CEEEEEeCCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcC---CC------CEEEEEEC
Q 000454 243 RNAVYCAIFDRSG------RYVITGSDDRLVKIWSMETAYCLASCR--GHEGDITDLAVSS---NN------ALVASASN 305 (1491)
Q Consensus 243 ~~~Vt~VaFSpDG------~~LATGS~DGtIrIWDl~Tg~~l~tL~--gH~~~VtsLafSP---DG------~lLASGS~ 305 (1491)
...|.|+++.+++ ++++.|+.|+++++..+....++..+. +-...+.++.+-+ ++ -+|.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 3568899999876 689999999999999998666666553 4445555555433 22 26667777
Q ss_pred CCeEEEE--ECCCC
Q 000454 306 DCIIRVW--RLPDG 317 (1491)
Q Consensus 306 DGtIrVW--Dl~tg 317 (1491)
+|.+.-. |.-+|
T Consensus 662 NGvllR~~id~v~G 675 (1205)
T KOG1898|consen 662 NGVLLRFVIDTVTG 675 (1205)
T ss_pred ccEEEEEEeccccc
Confidence 7765433 33444
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.53 E-value=1e+02 Score=36.43 Aligned_cols=160 Identities=16% Similarity=0.058 Sum_probs=86.9
Q ss_pred EccCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 000454 239 VRGHR-NAVYCAIFDRSGRYVITGSDDRLVKIWSMETA--YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLP 315 (1491)
Q Consensus 239 L~GH~-~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg--~~l~tL~gH~~~VtsLafSPDG~lLASGS~DGtIrVWDl~ 315 (1491)
+-||- ..|..+....+-.++.+|-.--..-+|+.... ..+...-.-.+-+.++.|+ +++...+..+.-++|.|+.
T Consensus 37 ~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS 114 (370)
T COG5276 37 YVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVS--EEYVYVADWSSGLRIVDIS 114 (370)
T ss_pred EeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEec--ccEEEEEcCCCceEEEecc
Confidence 44565 45666666544444444322222334554311 1112222245667788887 4566666677779999998
Q ss_pred CCCceeeecc--CCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccceeecCCCCCcccCCCCCCCCCCCCCCc
Q 000454 316 DGLPISVLRG--HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1491)
Q Consensus 316 tgk~i~~L~g--Hs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1491)
+...-..+.. -.+.-+++..+-+ +...+..|.-+.+.|+.+....... ++- .....
T Consensus 115 ~P~sP~~~~~lnt~gyaygv~vsGn-----~aYVadlddgfLivdvsdpssP~la----------gry-------a~~~~ 172 (370)
T COG5276 115 TPDSPTLIGFLNTDGYAYGVYVSGN-----YAYVADLDDGFLIVDVSDPSSPQLA----------GRY-------ALPGG 172 (370)
T ss_pred CCCCcceeccccCCceEEEEEecCC-----EEEEeeccCcEEEEECCCCCCceee----------eee-------ccCCC
Confidence 7643322211 1244455555543 6677775656788888765432211 100 11122
Q ss_pred ceEEEEECCCCCEEEEecCCceEEEEeCCCC
Q 000454 394 QIFCCAFNANGTVFVTGSSDTLARVWNACKP 424 (1491)
Q Consensus 394 ~V~slafSPDG~~LasGs~DG~IrVWDl~t~ 424 (1491)
....++.| |++...+..|+-+.|.|+..+
T Consensus 173 d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp 201 (370)
T COG5276 173 DTHDVAIS--GNYAYVAWRDGGLTIVDVSNP 201 (370)
T ss_pred CceeEEEe--cCeEEEEEeCCCeEEEEccCC
Confidence 22455555 667777778888999999653
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.32 E-value=89 Score=38.76 Aligned_cols=135 Identities=10% Similarity=0.086 Sum_probs=82.0
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCC---CceeeeccCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccce
Q 000454 291 LAVSSNNALVASASNDCIIRVWRLPDG---LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367 (1491)
Q Consensus 291 LafSPDG~lLASGS~DGtIrVWDl~tg---k~i~~L~gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~~ 367 (1491)
+-|...++.|++ ...|.+.=|-+... -++..-....++|.+|.|++|.+ .|++--.+.+|.+++....+....
T Consensus 28 vFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk---ilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 28 VFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK---ILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred eeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc---eEEEEecCceEEEEecCCCchhhH
Confidence 334433444433 34455666655322 33333345567999999999998 899999999999998744332222
Q ss_pred eecCCCCCcccCCCCCCCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCCCCCCCCCCCCceeeeecCCCCCce
Q 000454 368 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVN 447 (1491)
Q Consensus 368 i~~~~~~~~~~g~~~~~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t~~~~~s~~~~~~i~~l~gH~~~V~ 447 (1491)
... ........|...+|+.. .-+|.-...| +-+|-.... ...++....|...|.
T Consensus 104 ~~~----------------~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe--------krslRlVks~~~nvn 157 (657)
T KOG2377|consen 104 YTQ----------------ECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE--------KRSLRLVKSHNLNVN 157 (657)
T ss_pred HHH----------------HhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh--------hhhhhhhhhcccCcc
Confidence 111 11223455889999866 4455444333 555554321 334566678888899
Q ss_pred EEEEccCc
Q 000454 448 YVQFSGCA 455 (1491)
Q Consensus 448 sVafSpdg 455 (1491)
...|+++.
T Consensus 158 Wy~yc~et 165 (657)
T KOG2377|consen 158 WYMYCPET 165 (657)
T ss_pred EEEEcccc
Confidence 99998875
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.95 E-value=39 Score=44.14 Aligned_cols=166 Identities=10% Similarity=0.033 Sum_probs=83.5
Q ss_pred ceeEEEEccCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEE----ecCCCCeEEEEEcCCCCEEEEEECCCe
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC----RGHEGDITDLAVSSNNALVASASNDCI 308 (1491)
Q Consensus 233 ~k~v~tL~GH~~~Vt~VaFSpDG~~LATGS~DGtIrIWDl~Tg~~l~tL----~gH~~~VtsLafSPDG~lLASGS~DGt 308 (1491)
++++.++.-..+.+-.+.|+.+.. |++...+|+|.||++. |..+... ......|..+.|..+|-.+.+ .+|.
T Consensus 73 G~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~ 148 (829)
T KOG2280|consen 73 GQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQ 148 (829)
T ss_pred ccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEe--cCCc
Confidence 444444444445888999998865 5556799999999986 3333321 122345666666666643333 4455
Q ss_pred EEEE-ECCCCCceeeec---cCCCceEEEEecCCCCceEEEEEEe-CCCcEEEEccCCCCccceeecCCCCCcccCCCCC
Q 000454 309 IRVW-RLPDGLPISVLR---GHTAAVTAIAFSPRPGSVYQLLSSS-DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1491)
Q Consensus 309 IrVW-Dl~tgk~i~~L~---gHs~~VtsLaFSPdg~s~~~LaSgS-~DGtVrIWDl~tg~~~~~i~~~~~~~~~~g~~~~ 383 (1491)
|.+- ++... .+..+. +..-.-.|-+..++......|+-.. ..| ..+........ +
T Consensus 149 v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~-q----------------- 208 (829)
T KOG2280|consen 149 VILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRV-Q----------------- 208 (829)
T ss_pred EEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccc-c-----------------
Confidence 5443 33221 112221 1111112222222221111111111 111 11111111110 0
Q ss_pred CCCCCCCCCcceEEEEECCCCCEEEEecCCceEEEEeCCC
Q 000454 384 PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACK 423 (1491)
Q Consensus 384 ~~~s~~~h~~~V~slafSPDG~~LasGs~DG~IrVWDl~t 423 (1491)
..........+..|+.||+.++|+--...|.|.+-++..
T Consensus 209 -~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 209 -LHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDL 247 (829)
T ss_pred -ccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecch
Confidence 001111245688899999999999999999999887754
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=81.19 E-value=32 Score=42.11 Aligned_cols=100 Identities=16% Similarity=0.082 Sum_probs=56.9
Q ss_pred CeeEEEEcCCCCEEEEEe-----------ccc-eEEEEECCC--Cce--EEEEeCCCCCeEEEEEecCCCcEEEEEeCCC
Q 000454 542 GVNMIVWSLDNRFVLAAI-----------MDC-RICVWNAAD--GSL--VHSLTGHTESTYVLDVHPFNPRIAMSAGYDG 605 (1491)
Q Consensus 542 ~VtsVafSPDG~~LaSGs-----------~DG-~IrIWDl~t--gkl--l~tL~gHs~~VtsLafSPdd~~lLaSgS~DG 605 (1491)
....|+|.++|+++++-. ..+ .|.+++-.+ |+. ...+...-.....|+|.+ ++ +++ +....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCCe
Confidence 456799999999877643 223 787776543 332 234433334557899988 55 554 33443
Q ss_pred cEEEEeCCC-----CceEEE---EeeC----CcceEEEEEcCCCCEEEEEe
Q 000454 606 KTIVWDIWE-----GIPIRI---YEIS----RFRLVDGKFSPDGASIILSD 644 (1491)
Q Consensus 606 tIrIWDl~t-----Gk~l~~---l~~h----~~~VtslafSPDG~~LAsgs 644 (1491)
.+++.|... ++.... +... +.....++|.|||.+.++-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 333445431 122112 2221 23466899999998776544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=80.49 E-value=34 Score=43.45 Aligned_cols=104 Identities=11% Similarity=0.004 Sum_probs=50.5
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCC--ceee
Q 000454 254 SGRYVITGSDDR-----LVKIWSMETAYCLA--SCRGHEGDITDLAVSSNNALVASASND--CIIRVWRLPDGL--PISV 322 (1491)
Q Consensus 254 DG~~LATGS~DG-----tIrIWDl~Tg~~l~--tL~gH~~~VtsLafSPDG~lLASGS~D--GtIrVWDl~tgk--~i~~ 322 (1491)
++.++++|+.++ .+..||..+..-.. .+.........+ .-+|.+.+.|+.+ ..+..||..++. .+..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667777543 57778877654322 222111112222 2367777888764 357778865542 1122
Q ss_pred eccCCCceEEEEecCCCCceEEEEEEeCCC---cEEEEccCCCCc
Q 000454 323 LRGHTAAVTAIAFSPRPGSVYQLLSSSDDG---TCRIWDARYSQF 364 (1491)
Q Consensus 323 L~gHs~~VtsLaFSPdg~s~~~LaSgS~DG---tVrIWDl~tg~~ 364 (1491)
+....... +++. -++. ..+.||.++ .+..||..+...
T Consensus 349 l~~~r~~~-~~~~-~~g~---IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 349 LLKPRCNP-AVAS-INNV---IYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCCCCccc-EEEE-ECCE---EEEecCcCCCCccEEEEeCCCCEE
Confidence 21111111 1222 2332 556666543 366777765543
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=80.24 E-value=26 Score=43.37 Aligned_cols=142 Identities=11% Similarity=0.097 Sum_probs=64.4
Q ss_pred CCeEEEEECCCCeEEEEEecCC--CCeEEEEEcCC--CCEE-EEEECCCeEEEEEC-CCCC----ceeeec---------
Q 000454 264 DRLVKIWSMETAYCLASCRGHE--GDITDLAVSSN--NALV-ASASNDCIIRVWRL-PDGL----PISVLR--------- 324 (1491)
Q Consensus 264 DGtIrIWDl~Tg~~l~tL~gH~--~~VtsLafSPD--G~lL-ASGS~DGtIrVWDl-~tgk----~i~~L~--------- 324 (1491)
..++.+||+.+.+.++++.-.. ..+..|.|..+ ..+= +.+.-..+|..|-- ..+. .+..+.
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 4689999999999999987433 23567777654 3332 33333445554432 3331 111111
Q ss_pred --------cCCCceEEEEecCCCCceEEEEEEeCCCcEEEEccCCCCccc---eeecCCCCCcccCCCCCCCCCCCCCCc
Q 000454 325 --------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSP---RIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1491)
Q Consensus 325 --------gHs~~VtsLaFSPdg~s~~~LaSgS~DGtVrIWDl~tg~~~~---~i~~~~~~~~~~g~~~~~~~s~~~h~~ 393 (1491)
.-..-|+.|..|.|.+ ++.+++-..|.|+.||+....... ++++.... .+...+...-..-.+
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDr--fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~----~~~~~~~v~g~~l~G 374 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDR--FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSI----RKGDHPVVKGKRLRG 374 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS---EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTT----T-B--TTS------S
T ss_pred cccccccccCCCceEeEEEccCCC--EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEe----ccCCCccccccccCC
Confidence 1135689999999987 456677789999999998654322 22221100 000011111122334
Q ss_pred ceEEEEECCCCCEEEEec
Q 000454 394 QIFCCAFNANGTVFVTGS 411 (1491)
Q Consensus 394 ~V~slafSPDG~~LasGs 411 (1491)
...-+..|-||+.|.+.+
T Consensus 375 gPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 375 GPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTSSEEEEE-
T ss_pred CCCeEEEccCCeEEEEEe
Confidence 567788888998777654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1491 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-13 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-11 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-05 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-11 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-05 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-11 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 5e-05 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-11 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 5e-05 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-11 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-06 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 5e-05 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-11 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 5e-05 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-11 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-05 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-11 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-05 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-11 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-05 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 3e-11 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 6e-05 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-11 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 6e-05 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 3e-11 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 6e-05 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-11 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-05 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-11 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 6e-05 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 3e-11 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 6e-05 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 3e-11 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 7e-05 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 4e-11 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 7e-05 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 1e-10 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 5e-10 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-09 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 7e-08 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-06 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 7e-08 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-06 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-07 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 5e-05 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 2e-07 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 3e-07 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 3e-07 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-07 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-07 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 3e-07 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 3e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 5e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-04 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 8e-07 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 1e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 7e-05 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 2e-06 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 4e-06 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 6e-06 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 7e-06 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 7e-06 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 7e-06 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 8e-06 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 1e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 1e-05 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 1e-05 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-05 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-05 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-05 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 3e-05 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 3e-05 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 7e-05 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 1e-04 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 1e-04 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 1e-04 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 3e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1491 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-32 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-23 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-18 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-11 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-26 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-15 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-25 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-23 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-21 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-24 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-20 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-16 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-21 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-17 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-20 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-18 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-20 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-19 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-18 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-17 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-17 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-16 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-13 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-17 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-16 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-13 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-14 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-09 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-14 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-11 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-12 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-09 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-10 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-10 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.004 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-09 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 8e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-08 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-08 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-04 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-06 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 3e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-04 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 126 bits (316), Expect = 4e-32
Identities = 69/372 (18%), Positives = 130/372 (34%), Gaps = 68/372 (18%)
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
GHR+ V IF +++ S+D +K+W ET + +GH + D++ + L
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
+AS S D I++W I + GH V++++ P ++S+S D T ++W+
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG---DHIVSASRDKTIKMWEV 130
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419
+ + N +GT+ + S+D RVW
Sbjct: 131 QTGYCVKTFT--------------------GHREWVRMVRPNQDGTLIASCSNDQTVRVW 170
Query: 420 NACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWF 479
L H + V + ++ + S S A S+ K S
Sbjct: 171 VV---------ATKECKAELREHRHVVECISWAPESSYSSISEATGSE------TKKSGK 215
Query: 480 CHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539
+++ SRD + +W + G ++
Sbjct: 216 PGPFLLSGSRDKTIKMWDVST-----------------------------GMCLMTLVGH 246
Query: 540 PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAM 599
V +++ +F+L+ D + VW+ + + +L H LD H P +
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV- 305
Query: 600 SAGYDGKTIVWD 611
+ D VW+
Sbjct: 306 TGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 99.0 bits (245), Expect = 7e-23
Identities = 49/342 (14%), Positives = 95/342 (27%), Gaps = 27/342 (7%)
Query: 310 RVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIY 369
+ W +P L GH + VT + F P ++S+S+D T ++WD F
Sbjct: 1 KEW-IPRPPEKYALSGHRSPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERT-- 54
Query: 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS 429
+ +D+V + S + + S
Sbjct: 55 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR------TMHGHDHNVSSVS 108
Query: 430 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSR 489
PN + V + + + + F+ P + I +CS
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL-----IASCSN 163
Query: 490 DGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549
D + +W+ + L+ + + G
Sbjct: 164 DQTVRVWVVAT---------KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214
Query: 550 LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIV 609
F+L+ D I +W+ + G + +L GH + H I S D V
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDKTLRV 273
Query: 610 WDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYI 651
WD ++ + F ++ + +
Sbjct: 274 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 84.4 bits (207), Expect = 7e-18
Identities = 54/285 (18%), Positives = 101/285 (35%), Gaps = 72/285 (25%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 288
Q + I+ + GH + V +G ++++ S D+ +K+W ++T YC+ + GH +
Sbjct: 87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 146
Query: 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY----- 343
+ + + L+AS SND +RVW + + LR H V I+++P
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206
Query: 344 ------------QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQ 391
LLS S D T ++WD +
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWD--------------------VSTGMCLMTLVGH 246
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451
+ + F++ G ++ + D RVW+ + + L+ HE+ V + F
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDY---------KNKRCMKTLNAHEHFVTSLDF 297
Query: 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
+ +VT S D + +W
Sbjct: 298 H----------KTAPY----------------VVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.5 bits (184), Expect = 5e-15
Identities = 56/338 (16%), Positives = 115/338 (34%), Gaps = 67/338 (19%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
+ + ++GH ++V FD SG+ + + S D +K+W + C+ + GH+ +++
Sbjct: 46 YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS 105
Query: 290 DLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349
+++ N + SAS D I++W + G + GH V + + + S S
Sbjct: 106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG---TLIASCS 162
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409
+D T R+W + + R S S+ ++ G ++
Sbjct: 163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222
Query: 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469
GS D ++W+ + L GH+N V V F
Sbjct: 223 GSRDKTIKMWD---------VSTGMCLMTLVGHDNWVRGVLFHS---------------- 257
Query: 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529
I++C+ D + +W +++R
Sbjct: 258 ----------GGKFILSCADDKTLRVWDYKNKR--------------------------- 280
Query: 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 567
+ + V + + +V+ +D + VW
Sbjct: 281 --CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.8 bits (156), Expect = 2e-11
Identities = 35/286 (12%), Positives = 70/286 (24%), Gaps = 41/286 (14%)
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451
+ F+ +V V+ S D +VW+ + L GH + V + F
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDY---------ETGDFERTLKGHTDSVQDISF 67
Query: 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511
+ K F + + + +
Sbjct: 68 DHSGKLLAS-------CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120
Query: 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571
+ +K+ + V M+ + D + + D + VW A
Sbjct: 121 RDKTIKMWEVQTGYCV------KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 174
Query: 572 GSLVHSLTGHTESTYVLDVHPFNPRIA-------------------MSAGYDGKTIVWDI 612
L H + P + + +S D +WD+
Sbjct: 175 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 234
Query: 613 WEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGE 658
G+ + + F G I+ D L + +
Sbjct: 235 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 280
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 111 bits (276), Expect = 1e-26
Identities = 46/375 (12%), Positives = 110/375 (29%), Gaps = 33/375 (8%)
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
RGH +V YVITG+DD++++++ L GH+G + L + L
Sbjct: 9 RGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
V+ +++ + ++ + ++ S D T +W
Sbjct: 68 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI--VTGSRDNTLHVWKL 125
Query: 360 RYSQFSPRIYIPRPSDAVAGRN-MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418
P V P + H + +G + V+GS D V
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 419 WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478
W+ + + + + ++++ + D+T + +
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM--------------DTTIRIWDLE 231
Query: 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILP 538
+ + AA +
Sbjct: 232 NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH----------- 280
Query: 539 TPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHS-LTGHTESTYVLDVHPFNPRI 597
++ I + +L + + + ++N G LVH+ + + + ++ +
Sbjct: 281 -HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTL 337
Query: 598 AMSAGYDGKTIVWDI 612
+ DG++ + +
Sbjct: 338 VAAVEKDGQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.2 bits (188), Expect = 2e-15
Identities = 44/376 (11%), Positives = 102/376 (27%), Gaps = 35/376 (9%)
Query: 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPR 338
+ RGH + + + V + ++D +IRV+ + + L GH V A+ ++
Sbjct: 6 TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64
Query: 339 PGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398
L+S S D T R+WD + + + +
Sbjct: 65 ----GILVSGSTDRTVRVWDIKKGCCTHVFEGH------------------NSTVRCLDI 102
Query: 399 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVAS 458
N VTGS D VW + + + + + + V
Sbjct: 103 VEYKNIKYIVTGSRDNTLHVWKL------PKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156
Query: 459 RFSLADSSKEDSTPKFKNSWFCHDNIVT--CSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516
S + S +DN + + + +
Sbjct: 157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 216
Query: 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH 576
+ + + ++ + L + A+
Sbjct: 217 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK 276
Query: 577 SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV-DGKFSP 635
HT + + + + + +G + + ++++ G + + + F
Sbjct: 277 FSYHHTNLSAITTFYVSDNILV--SGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG 334
Query: 636 DGASIILSDDVGQLYI 651
+ D GQ ++
Sbjct: 335 KTLVAAVEKD-GQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.1 bits (141), Expect = 2e-09
Identities = 7/94 (7%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 270 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI-SVLRGHTA 328
+ H +++ + + + + ++ ++ L G + + +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325
Query: 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362
+ ++ F + + + DG + +S
Sbjct: 326 QIWSVNFKGK----TLVAAVEKDGQSFLEILDFS 355
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.3 bits (131), Expect = 3e-08
Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 3/109 (2%)
Query: 207 FTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRL 266
+ + A + K H N F S +++GS+++
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ- 304
Query: 267 VKIWSMETAYCLAS-CRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314
I+++ + + + I + LVA+ D + L
Sbjct: 305 FNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.9 bits (104), Expect = 6e-05
Identities = 16/123 (13%), Positives = 39/123 (31%)
Query: 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK 606
++ +V+ D I V+++ + + L+GH + L ++ S +
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR 77
Query: 607 TIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYD 666
+ S R +D + I+ L++ + S D +
Sbjct: 78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 137
Query: 667 QFF 669
+
Sbjct: 138 HDY 140
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 105 bits (263), Expect = 6e-25
Identities = 62/380 (16%), Positives = 117/380 (30%), Gaps = 83/380 (21%)
Query: 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDL 291
+M+ + +RGH +Y + R +++ S D + IW T + + +
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 292 AVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD 351
A + + VA D I ++ L + A T R Q+++SS D
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163
Query: 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 411
TC +WD Q + + + + + +FV+G+
Sbjct: 164 TTCALWDIETGQQTTTFT--------------------GHTGDVMSLSLAPDTRLFVSGA 203
Query: 412 SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471
D A++W+ + +GHE+D+N + F
Sbjct: 204 CDASAKLWDV---------REGMCRQTFTGHESDINAICFFP------------------ 236
Query: 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 531
+ T S D + ++ R+ + +
Sbjct: 237 --------NGNAFATGSDDATCRLFDLRADQELMTYSHDNI------------------- 269
Query: 532 PRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH 591
G+ + +S R +LA D VW+A L GH L V
Sbjct: 270 --------ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 592 PFNPRIAMSAGYDGKTIVWD 611
+A + +D +W+
Sbjct: 322 DDGMAVA-TGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 100 bits (249), Expect = 3e-23
Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 5/131 (3%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKI--WSMETAYCLASCRGHEGD 287
V++ + GH + + F +G TGSDD ++ + S
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272
Query: 288 ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347
IT ++ S + L+ + +D VW VL GH V+ + + + +
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG---MAVAT 329
Query: 348 SSDDGTCRIWD 358
S D +IW+
Sbjct: 330 GSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 94.4 bits (233), Expect = 4e-21
Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 25/194 (12%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 288
++ Q GH V R ++G+ D K+W + C + GHE DI
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 289 TDLAVSSNNALVASASNDCIIRV--WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLL 346
+ N A+ S+D R+ R L +T+++FS S LL
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK---SGRLLL 286
Query: 347 SSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV 406
+ DD C +WDA + +++ C +G
Sbjct: 287 AGYDDFNCNVWDA--------------------LKADRAGVLAGHDNRVSCLGVTDDGMA 326
Query: 407 FVTGSSDTLARVWN 420
TGS D+ ++WN
Sbjct: 327 VATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.1 bits (188), Expect = 2e-15
Identities = 18/90 (20%), Positives = 33/90 (36%)
Query: 223 IAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR 282
+ + F +SGR ++ G DD +W A
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 283 GHEGDITDLAVSSNNALVASASNDCIIRVW 312
GH+ ++ L V+ + VA+ S D +++W
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.5 bits (171), Expect = 3e-13
Identities = 29/269 (10%), Positives = 72/269 (26%), Gaps = 22/269 (8%)
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451
+I+ + + + V+ S D +W++ +++ + + V +
Sbjct: 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT---------TNKVHAIPLRSSWVMTCAY 105
Query: 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511
+ + D+ N N+ ++ R +
Sbjct: 106 APS-----GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS 160
Query: 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571
Q V + + D R ++ D +W+ +
Sbjct: 161 SGDTTCALWDIETGQQT-----TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR--LV 629
G + TGH + P A + D ++D+ + Y +
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFA-TGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 630 DGKFSPDGASIILSDDVGQLYILNTGQGE 658
FS G ++ D + + + +
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.2 bits (152), Expect = 8e-11
Identities = 45/332 (13%), Positives = 86/332 (25%), Gaps = 45/332 (13%)
Query: 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 381
LRGH A + A+ + L+S+S DG IWD+ + I +
Sbjct: 50 TLRGHLAKIYAMHWGTDSR---LLVSASQDGKLIIWDSYTTNKVHAIPL----------- 95
Query: 382 MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441
+S + CA+ +G G D + ++N +
Sbjct: 96 ---------RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 501
S D+T + G +
Sbjct: 147 SCCRFLDDNQIVT-----------SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195
Query: 502 RSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561
+ + L G RQ +N I + + D
Sbjct: 196 TRLFVSGACDASAKL--------WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 562 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP--RIAMSAGYDGKTIVWDIWEGIPIR 619
+++ + + + + V F+ R+ ++ D VWD +
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVS-FSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 620 IYEISRFRLVDGKFSPDGASIILSDDVGQLYI 651
+ R+ + DG ++ L I
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 103 bits (256), Expect = 8e-24
Identities = 59/398 (14%), Positives = 113/398 (28%), Gaps = 58/398 (14%)
Query: 221 YAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLAS 280
Y + P+ + + + H + V C F G Y+ TG + +++ + +A
Sbjct: 40 YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVAR 98
Query: 281 CRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 340
D + N + +S+ I V PDG ++ + +
Sbjct: 99 LSDDSAANKD--PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV 156
Query: 341 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400
+ Q R D G+ S +
Sbjct: 157 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS---IEDGVTTVAVS 213
Query: 401 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460
+G GS D RVW++ + +E +GH++ V V F+
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES--GTGHKDSVYSVVFTRD------ 265
Query: 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520
++V+ S D S +W ++
Sbjct: 266 --------------------GQSVVSGSLDRSVKLWNLQNAN-----------------N 288
Query: 521 PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTG 580
P G + V + + ++ ++L+ D + W+ G+ + L G
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG 348
Query: 581 HTESTYVLDV------HPFNPRIAMSAGYDGKTIVWDI 612
H S + V P A + D K +W
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFA-TGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 93.3 bits (230), Expect = 2e-20
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 15/139 (10%)
Query: 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA------------YCLASCRGH 284
+ GH+++VY +F R G+ V++GS DR VK+W+++ A C + GH
Sbjct: 248 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307
Query: 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG---S 341
+ + +A + N+ + S S D + W G P+ +L+GH +V ++A +
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367
Query: 342 VYQLLSSSDDGTCRIWDAR 360
+ S D RIW +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 83.7 bits (205), Expect = 2e-17
Identities = 50/286 (17%), Positives = 93/286 (32%), Gaps = 47/286 (16%)
Query: 218 AACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC 277
++ + + ++GH +Y + SG +++GS DR V+IW + T C
Sbjct: 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197
Query: 278 LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDG-------LPISVLRGHTAAV 330
+ +G T + +A+ S D +RVW G GH +V
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257
Query: 331 TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGP 390
++ F+ ++S S D + ++W+ + + P
Sbjct: 258 YSVVFTRDG---QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-------- 306
Query: 391 QSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450
+ A N ++GS D W+ + + + +L GH N V V
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDK---------KSGNPLLMLQGHRNSVISVA 357
Query: 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
+ + ++ T S D A IW
Sbjct: 358 VANGSSLGP--------------------EYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.1 bits (193), Expect = 9e-16
Identities = 55/371 (14%), Positives = 109/371 (29%), Gaps = 36/371 (9%)
Query: 298 ALVASASNDCIIRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355
AL ++ I+ LP + + + + HT+ V + FS + L++ + T +
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG----EYLATGCNKTTQ 86
Query: 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415
++ R+ S A +SS+ I F+ +G TG+ D L
Sbjct: 87 VYRVSDGSLVARLS--DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 144
Query: 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
R+W+ Q + + + + + R + + T +
Sbjct: 145 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 204
Query: 476 NSWFCH-------DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528
+ I S D + +W + +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER------------LDSENESGTG 252
Query: 529 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588
++ T G +++ SLD L + + + S +T +VL
Sbjct: 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312
Query: 589 DV--HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE------ISRFRLVDGKFSPDGASI 640
V + I S D + WD G P+ + + IS P+
Sbjct: 313 SVATTQNDEYIL-SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371
Query: 641 ILSDDVGQLYI 651
+ I
Sbjct: 372 ATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.8 bits (156), Expect = 3e-11
Identities = 42/364 (11%), Positives = 93/364 (25%), Gaps = 49/364 (13%)
Query: 318 LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377
+P + H+ + SV L + +++ +PR D
Sbjct: 4 VPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPA---------LPREIDVE 54
Query: 378 AGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNA---------CKPNTDD 428
+++ +S + C F+ +G TG + T +V+ + +
Sbjct: 55 LHKSLDHTSV-------VCCVKFSNDGEYLATGCNKTT-QVYRVSDGSLVARLSDDSAAN 106
Query: 429 SDQPNHEIDVLSGHENDVNYVQFS--GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVT 486
D N + + V FS G +A+ +++ + I+
Sbjct: 107 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT------GAEDRLIRIWDIENRKIVMILQ 160
Query: 487 CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI 546
+ S + + + +P I
Sbjct: 161 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 220
Query: 547 VWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGK 606
+R V + D S S TGH +S Y + + S D
Sbjct: 221 AAGSLDRAV--RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV-SGSLDRS 277
Query: 607 TIVWDIWEGIPIRIYEISRF------------RLVDGKFSPDGASIILSDDVGQLYILNT 654
+W++ + ++ + + I+ + +
Sbjct: 278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 337
Query: 655 GQGE 658
G
Sbjct: 338 KSGN 341
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 96.8 bits (239), Expect = 1e-21
Identities = 39/403 (9%), Positives = 97/403 (24%), Gaps = 83/403 (20%)
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR------GHEGDITDLAV 293
+ H ++ + ++ S D +K+W + H+ + + V
Sbjct: 11 KAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 294 -------SSNNALVASASNDCIIRVWRLPDGLPISVLRGHT----------AAVTAIAFS 336
+ LVA+ S + +R+ + + A+ +
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 337 PRPGSVYQ--LLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ 394
+ L+++ GT IW S + + S S
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT--PSQF 186
Query: 395 IFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454
+ G + TG ++ ++ + + H + S V +
Sbjct: 187 ATSVDISERGLI-ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF------ 239
Query: 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514
+ S + +
Sbjct: 240 -----------------------SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 276
Query: 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL 574
H V + ++ + +A D ++ W+
Sbjct: 277 H-------------SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 323
Query: 575 VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI----VWDIW 613
+ +L H + + +A+ G ++ V+D+
Sbjct: 324 ITTLNMHCDD-----IEIEEDILAVDE--HGDSLAEPGVFDVK 359
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.6 bits (202), Expect = 6e-17
Identities = 31/380 (8%), Positives = 85/380 (22%), Gaps = 51/380 (13%)
Query: 320 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 379
+ + H A + +++ +S S DG ++WD +
Sbjct: 7 ANAGKAHDADIFSVSACNS-----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61
Query: 380 RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL 439
+ T S + + ++D+L
Sbjct: 62 GLHHVDVLQA-------IERDAFELCLVATTSFSGDLLFYR-ITREDETKKVIFEKLDLL 113
Query: 440 S--GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWI 497
++ +++ ++ T D + + + S + +
Sbjct: 114 DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
Query: 498 PRSRRSHPKAARWTQA---------------YHLKVPPPPMPPQPPRGGPRQRILPTPRG 542
+ S +++ + +++ + ++
Sbjct: 174 QGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 233
Query: 543 VNMIVWSLDNRFVLAAIMDCRICVWNAAD----------------GSLVHSLTGHTESTY 586
+ + +S + A + H+
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293
Query: 587 VLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS----RFRLVDGKFSPDGASIIL 642
L + + AG+DGK WD+ I + G S+
Sbjct: 294 SLSFNDSGETLCS-AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE 352
Query: 643 SDDVGQLYILNTGQGESQKD 662
++ + D
Sbjct: 353 PGVFDVKFLKKGWRSGMGAD 372
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.2 bits (123), Expect = 3e-07
Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 7/121 (5%)
Query: 220 CYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA 279
I S Q H + V F+ SG + + D ++ W ++T +
Sbjct: 266 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT 325
Query: 280 SCRGHEGDI----TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAF 335
+ H DI LAV + +A + V L G + ++ +
Sbjct: 326 TLNMHCDDIEIEEDILAVDEHGDSLAEPG---VFDVKFLKKGWRSGMGADLNESLCCVCL 382
Query: 336 S 336
Sbjct: 383 D 383
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 3e-05
Identities = 15/146 (10%), Positives = 38/146 (26%), Gaps = 16/146 (10%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSM---------------- 272
+ ++ + + N++ F G + D ++
Sbjct: 217 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT 276
Query: 273 ETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTA 332
++ H + L+ + + + SA D +R W + I+ L H +
Sbjct: 277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 336
Query: 333 IAFSPRPGSVYQLLSSSDDGTCRIWD 358
L+ +
Sbjct: 337 EEDILAVDEHGDSLAEPGVFDVKFLK 362
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.0 bits (229), Expect = 1e-20
Identities = 45/385 (11%), Positives = 91/385 (23%), Gaps = 65/385 (16%)
Query: 270 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAA 329
W +GH+ + + + S S+D ++VW G + L GHT
Sbjct: 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 330 VTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAG 389
V + + + + V ++
Sbjct: 60 VWSSQMRDNIIISGS-------TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS 112
Query: 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449
G A S + + V +
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT 172
Query: 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509
+ T + + F ++V+ S D S +W
Sbjct: 173 L-----------------QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE---------- 205
Query: 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSL--DNRFVLAAIMDCRICVW 567
+ T G + + + +++ D + +W
Sbjct: 206 -----------------------TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 242
Query: 568 NAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR 627
+ G + +L G + + FN +++ DG +WD+ G IR
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302
Query: 628 LVDG-----KFSPDGASIILSDDVG 647
G + S + G
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNG 327
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.0 bits (211), Expect = 3e-18
Identities = 70/429 (16%), Positives = 131/429 (30%), Gaps = 141/429 (32%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDIT 289
++++ K ++GH + V G +++GSDD +K+WS T CL + GH G +
Sbjct: 3 RGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61
Query: 290 DLAVSSN--------------------------------------NALVASASNDCIIRV 311
+ N V S S D +RV
Sbjct: 62 SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV 121
Query: 312 WRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP 371
W + G + VL GH AAV + + R +++S + D ++WD +
Sbjct: 122 WDIETGQCLHVLMGHVAAVRCVQYDGR-----RVVSGAYDFMVKVWDPETETCLHTL--- 173
Query: 372 RPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431
Q H + +G V+GS DT RVW+ +
Sbjct: 174 -------------------QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV---------E 205
Query: 432 PNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG 491
+ I L+GH++ + ++ + +V+ + D
Sbjct: 206 TGNCIHTLTGHQSLTSGMELKD----------------------------NILVSGNADS 237
Query: 492 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551
+ IW ++ + + + +
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQS----------------------------AVTCLQFN 269
Query: 552 NRFVLAAIMDCRICVWNAADGSLVHSLT-----GHTESTYVLDVHPFNPRIAMSAGYDG- 605
FV+ + D + +W+ G + +L G + + A +G
Sbjct: 270 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA-VGSRNGT 328
Query: 606 ---KTIVWD 611
K +V D
Sbjct: 329 EETKLLVLD 337
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.6 bits (223), Expect = 6e-20
Identities = 39/343 (11%), Positives = 94/343 (27%), Gaps = 43/343 (12%)
Query: 291 LAVSSNNALVA-SASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349
V+++ + D +I I+ L H V A+ S + + +
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNP----TRHVYTG 69
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409
G ++WD + + + + + I C +G +
Sbjct: 70 GKGCVKVWDISHPGNKSPVSQLDCLN---------------RDNYIRSCKLLPDGCTLIV 114
Query: 410 GSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469
G + +W+ P + + C ++ D +
Sbjct: 115 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174
Query: 470 STPKFKNSW---------FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520
+F+ + T D + W R R + +Q + L P
Sbjct: 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP 234
Query: 521 P-----------PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNA 569
+ + ++ V + ++ ++ ++ D + W
Sbjct: 235 TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294
Query: 570 ADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612
G+ + + S D+ + I + D K V+++
Sbjct: 295 PYGASIFQS-KESSSVLSCDISVDDKYIV-TGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (170), Expect = 4e-13
Identities = 22/182 (12%), Positives = 51/182 (28%), Gaps = 5/182 (2%)
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
W VR G + + + +
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
+ ++ + +G ++ G + V++ + HE + L +
Sbjct: 221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKW 279
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
S D ++ WR P G I +++V + S +++ S D +++
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK---YIVTGSGDKKATVYEV 335
Query: 360 RY 361
Y
Sbjct: 336 IY 337
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.8 bits (169), Expect = 5e-13
Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 11/147 (7%)
Query: 168 SYDRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPS 227
+ D D H + Q+ LG G + ++
Sbjct: 200 TGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV------ 253
Query: 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD 287
+ ++ H + V F G++ ++ D L+ W +
Sbjct: 254 ----NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSS 308
Query: 288 ITDLAVSSNNALVASASNDCIIRVWRL 314
+ +S ++ + + S D V+ +
Sbjct: 309 VLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.5 bits (163), Expect = 3e-12
Identities = 38/338 (11%), Positives = 73/338 (21%), Gaps = 62/338 (18%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLA-----SCRGHEGDITDLAVSS 295
H V R+V TG VK+W + + C + I +
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 296 NNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355
+ + + +W + + L+SS
Sbjct: 108 DGCTLIVGGEASTLSIWD---------------------LAAPTPRIKAELTSSAPACYA 146
Query: 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415
+ + S+ N + C + +GT TG D
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206
Query: 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
R W+ + +I L + + K
Sbjct: 207 VRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHES 266
Query: 476 NSW---FCHDN--IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530
F + V+ +D W
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPY------------------------------ 296
Query: 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 568
G V S+D+++++ D + V+
Sbjct: 297 GASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (126), Expect = 1e-07
Identities = 32/241 (13%), Positives = 60/241 (24%), Gaps = 26/241 (10%)
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
+ + + C + +++
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
+GH + C G + TG D V+ W + I L
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-LQQHDFTSQIFSLGYCPTGEW 238
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
+A + V + + H + V ++ F+ +S+ D W
Sbjct: 239 LAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAY---CGKWFVSTGKDNLLNAWRT 294
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVW 419
Y I+ + S +V C + + VTGS D A V+
Sbjct: 295 PYGA---SIFQSKESSSV------------------LSCDISVDDKYIVTGSGDKKATVY 333
Query: 420 N 420
Sbjct: 334 E 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 2e-07
Identities = 28/291 (9%), Positives = 60/291 (20%), Gaps = 40/291 (13%)
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451
+ + TG + +VW+ + + P ++D +N + +
Sbjct: 51 GEVVCAVTISNPTRHVYTGGKGCV-KVWDI---SHPGNKSPVSQLD-CLNRDNYIRSCKL 105
Query: 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511
+ + S +T S + I +
Sbjct: 106 LPD--GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163
Query: 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571
+ + Q + + + V + + +
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF 223
Query: 572 GSLVHSLT-------------------------------GHTESTYVLDVHPFNPRIAMS 600
S + SL H L S
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV-S 282
Query: 601 AGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYI 651
G D W G I + S ++ S D I+ + +
Sbjct: 283 TGKDNLLNAWRTPYGASIFQSKESS-SVLSCDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 5e-06
Identities = 36/276 (13%), Positives = 58/276 (21%), Gaps = 55/276 (19%)
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
N + G +I G + + IW + A++ +
Sbjct: 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS 153
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD--------- 350
S + V + A D
Sbjct: 154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Query: 351 --------DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQ--IFCCAF 400
D T +I+ Y + + S V ++ H+ + F
Sbjct: 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273
Query: 401 NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRF 460
G FV+ D L W P S + V S
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRT----------PYGASIFQSKESSSVLSCDIS-------- 315
Query: 461 SLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
D IVT S D A ++
Sbjct: 316 --VDDKY----------------IVTGSGDKKATVY 333
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 89.6 bits (220), Expect = 1e-19
Identities = 42/333 (12%), Positives = 85/333 (25%), Gaps = 31/333 (9%)
Query: 286 GDITDLAVSSNNALVASASNDC-IIRVWRLPDG--LPISVLRGH-TAAVTAIAFSPRPGS 341
T L+ +A +R D P+ GH ++ VT + FSP GS
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 342 VYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFN 401
Y L S + G +W + + S + + S + I +++
Sbjct: 78 QY-LCSGDESGKVIVWGWTFDKESNSVE------------VNVKSEFQVLAGPISDISWD 124
Query: 402 ANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461
G + + + + ++ + S
Sbjct: 125 FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSV 184
Query: 462 LADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521
+ + + V + S K + + +
Sbjct: 185 VFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 244
Query: 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH 581
+P +G + LD++ D I VW+ V T
Sbjct: 245 EDDQEPVQG------------GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 292
Query: 582 TESTYV--LDVHPFNPRIAMSAGYDGKTIVWDI 612
+ + V +S DG +++
Sbjct: 293 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (142), Expect = 1e-09
Identities = 18/151 (11%), Positives = 45/151 (29%), Gaps = 3/151 (1%)
Query: 167 LSYDRDKGQNEIDHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKP 226
D G P +G +R++ ++ +
Sbjct: 175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 234
Query: 227 STMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEG 286
+ ++ I+ + A+ + T D +++W + T+ C+ +
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294
Query: 287 DITDLAVS---SNNALVASASNDCIIRVWRL 314
+ + V + N + S S D + + L
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.7 bits (132), Expect = 2e-08
Identities = 17/179 (9%), Positives = 42/179 (23%), Gaps = 4/179 (2%)
Query: 184 HMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHR 243
+ + +R R+ ++ + + + +
Sbjct: 146 WDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG 205
Query: 244 NAVYCA----IFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
+ V V + S E + + ++
Sbjct: 206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 265
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
A+ D IRVW + + + +++S S DGT ++
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.3 bits (131), Expect = 3e-08
Identities = 31/327 (9%), Positives = 76/327 (23%), Gaps = 31/327 (9%)
Query: 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380
S R T +++ P ++ R D S+ P +
Sbjct: 14 STQRNF---TTHLSYDPTTNAI--AYPCGKSAFVRCLDDGDSKVPPVVQF---------- 58
Query: 381 NMAPSSSAGPQSHQIFCCAF--NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 438
G S + F +G VW + + + +
Sbjct: 59 -------TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG-WTFDKESNSVEVNVKSE 110
Query: 439 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIP 498
++ + + R D+ F + + I
Sbjct: 111 FQVLAGPISDISWDFE---GRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS-QRINACH 166
Query: 499 RSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558
+ ++ + P + R V S + + +
Sbjct: 167 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 226
Query: 559 IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618
+ + + + + + + G D VWD+ +
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 286
Query: 619 RIYEISRFRLVDGK--FSPDGASIILS 643
+ + + + +L + + G I+S
Sbjct: 287 QKWTLDKQQLGNQQVGVVATGNGRIIS 313
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 6e-06
Identities = 30/306 (9%), Positives = 71/306 (23%), Gaps = 72/306 (23%)
Query: 231 QKMQNIKRVRGHR-NAVYCAIF--DRSGRYVITGSDDRLVKIWSMET--------AYCLA 279
K+ + + GH + V F + +Y+ +G + V +W +
Sbjct: 50 SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS 109
Query: 280 SCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP 339
+ G I+D++ + + S+ + A +
Sbjct: 110 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ 169
Query: 340 GSVYQLLSSSDDGTCRIWDA-----------------------------RYSQFSPRIYI 370
+ ++ DDG+ + +
Sbjct: 170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 229
Query: 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430
D +G + + F T +D RVW+
Sbjct: 230 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV--------- 280
Query: 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD 490
+ + + + + Q + I++ S D
Sbjct: 281 TTSKCVQKWTLDKQQLGNQQVGV-----------------------VATGNGRIISLSLD 317
Query: 491 GSAIIW 496
G+ +
Sbjct: 318 GTLNFY 323
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 86.5 bits (212), Expect = 1e-18
Identities = 34/328 (10%), Positives = 67/328 (20%), Gaps = 36/328 (10%)
Query: 286 GDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 345
G L + + + + + + H+ T SP S Y
Sbjct: 18 GTAVVLGNTPAGDKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVAKTSP---SGYYC 73
Query: 346 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405
S G RIWD + + IP P S A
Sbjct: 74 ASGDVHGNVRIWDTTQTTHILKTTIPV--------FSGPVKDISWDSESKRIAAVGEGRE 125
Query: 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465
F + + + + + + +
Sbjct: 126 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF 185
Query: 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525
+ + DG+ +++ +
Sbjct: 186 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 245
Query: 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST 585
P D + +A D I +WN A + ++ T
Sbjct: 246 WSP----------------------DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 283
Query: 586 -YVLDVHPFNPRIAMSAGYDGKTIVWDI 612
L + + S +G +
Sbjct: 284 DQQLGIIWTKQALV-SISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.4 bits (134), Expect = 1e-08
Identities = 17/134 (12%), Positives = 35/134 (26%), Gaps = 1/134 (0%)
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
P +R G Y + + +
Sbjct: 175 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 234
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEG-DITDLAVSSNNA 298
H +V+ + G + + S D+ +KIW++ T + + L +
Sbjct: 235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 294
Query: 299 LVASASNDCIIRVW 312
+ S S + I
Sbjct: 295 ALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.3 bits (131), Expect = 2e-08
Identities = 24/262 (9%), Positives = 55/262 (20%), Gaps = 9/262 (3%)
Query: 243 RNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVAS 302
R +G + + V + + H T S + AS
Sbjct: 17 RGTAVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75
Query: 303 ASNDCIIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDAR 360
+R+W + + + + V I++ + + +
Sbjct: 76 GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135
Query: 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
+ R ++V + P T T
Sbjct: 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 195
Query: 421 ACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC 480
P+ + ++ + D +
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV------AHSGSVFGLTWSPD 249
Query: 481 HDNIVTCSRDGSAIIWIPRSRR 502
I + S D + IW + +
Sbjct: 250 GTKIASASADKTIKIWNVATLK 271
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.2 bits (123), Expect = 2e-07
Identities = 23/180 (12%), Positives = 47/180 (26%), Gaps = 4/180 (2%)
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
+ + F + A + ++ K V
Sbjct: 133 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 192
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAL 299
R ++F +G + + + H G + L S +
Sbjct: 193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHT-AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
+ASAS D I++W + + T + + L+S S +G +
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA---LVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.7 bits (119), Expect = 6e-07
Identities = 35/334 (10%), Positives = 73/334 (21%), Gaps = 39/334 (11%)
Query: 321 SVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380
RG + +P + + +
Sbjct: 14 RTARGT---AVVLGNTPAG----DKIQYCNGTSVYTVPVG-------------------- 46
Query: 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS 440
++ + SHQ + +G +G R+W+ + +
Sbjct: 47 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT-------QTTHILKTTIP 99
Query: 441 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRS 500
V + + + + F + S R
Sbjct: 100 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP 159
Query: 501 RRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM 560
R + T A P + P G D V +
Sbjct: 160 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV---LY 216
Query: 561 DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRI 620
+ H+ S + L P +IA SA D +W++ +
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA-SASADKTIKIWNVATLKVEKT 275
Query: 621 YEI-SRFRLVDGKFSPDGASIILSDDVGQLYILN 653
+ +R +++ G + +N
Sbjct: 276 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.5 bits (116), Expect = 2e-06
Identities = 41/298 (13%), Positives = 81/298 (27%), Gaps = 65/298 (21%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIW--SMETAYCLASCRGHEGD 287
V + + + H + A SG Y +G V+IW + T + G
Sbjct: 45 VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP 104
Query: 288 ITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLS 347
+ D++ S + +A+ S A + +P ++++S
Sbjct: 105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164
Query: 348 SSDDGTCRIW-----------------------------DARYSQFSPRIYIPRPSDAVA 378
SDD T I+ A +
Sbjct: 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 224
Query: 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 438
G S S +F ++ +GT + S+D ++WN + + I V
Sbjct: 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV------ATLKVEKTIPV 278
Query: 439 LSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
+ E+ + ++ +V+ S +G
Sbjct: 279 GTRIEDQQLGIIWTK----------------------------QALVSISANGFINFV 308
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 83.4 bits (204), Expect = 2e-17
Identities = 38/348 (10%), Positives = 85/348 (24%), Gaps = 27/348 (7%)
Query: 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR---GHTAAVTAIAFSPRP 339
+ I+D+ + + +L+ S D + V++ L + + F
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Query: 340 GSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA 399
+ + S + ++ R +
Sbjct: 69 D---LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 400 FNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459
+ N N + N ++ + + V + + C +
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
Query: 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVP 519
+S + + S DG + + +++ ++
Sbjct: 186 TI-EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 520 PPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT 579
P N I +S ++F+ A D I WN + +
Sbjct: 245 LKDTNLAYPV--------------NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290
Query: 580 GHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIW----EGIPIRIYEI 623
E + V+ + + I A D E IY I
Sbjct: 291 KFNEDS-VVKIAC-SDNILCLATSDDTFKTNAAIDQTIELNASSIYII 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.3 bits (165), Expect = 2e-12
Identities = 36/333 (10%), Positives = 82/333 (24%), Gaps = 29/333 (8%)
Query: 320 ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAG 379
+ + + ++ I P LL +S DG+ ++
Sbjct: 4 VQIEQAPKDYISDIKIIPSKS---LLLITSWDGSLTVYKFD-----------------IQ 43
Query: 380 RNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVL 439
+ H + CC F N + + + + + N+E ++
Sbjct: 44 AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLG 103
Query: 440 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPR 499
+ + + D + ++ V
Sbjct: 104 ICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163
Query: 500 SRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAI 559
+ +W + + + + R L S+D R +
Sbjct: 164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223
Query: 560 MDCRICVWNAADGSLVH-----SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614
D ++ + T ++ P + +AG DG W++
Sbjct: 224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQT 282
Query: 615 GIPIRIYEISRFRLVDGKFSPDGASIIL--SDD 645
I+ + K + + L SDD
Sbjct: 283 RKKIKNFA-KFNEDSVVKIACSDNILCLATSDD 314
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.6 bits (132), Expect = 2e-08
Identities = 19/147 (12%), Positives = 36/147 (24%), Gaps = 22/147 (14%)
Query: 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA---------------YCLASCRGHEG 286
A+ + S D V + +
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 287 DITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLL 346
+ + S + + +A +D II W L I + + + L
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDN---ILC 308
Query: 347 SSSDDGTCRIWDARYSQF---SPRIYI 370
++ D T + A + IYI
Sbjct: 309 LATSDDTFKTNAAIDQTIELNASSIYI 335
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 4e-07
Identities = 11/111 (9%), Positives = 41/111 (36%), Gaps = 5/111 (4%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 288
+ + + V F +++ T D ++ W+++T + + +
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NED 295
Query: 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRP 339
+ + ++ ++ ++ A++D + D + + +++ I P
Sbjct: 296 SVVKIACSDNILCLATSDDTFKTNAAID----QTIELNASSIYIIFDYENP 342
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 83.4 bits (204), Expect = 3e-17
Identities = 40/390 (10%), Positives = 88/390 (22%), Gaps = 56/390 (14%)
Query: 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--AYCLASCRGHEGDITDLAVSSNNAL 299
+ C +++ + ++ V I+ + + H G +T + + ++
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 300 VASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDA 359
+ + D VW L L A P S I
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF-AVGSGSRVISICYF 124
Query: 360 RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV--TGSSDTLAR 417
+ + S + + A + + + + R
Sbjct: 125 EQENDWWVCKHIKK------PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 178
Query: 418 VWNACKPNTDDSDQPNHEIDVLSGHENDVN-------YVQFSGCAVASRFSLADSSKEDS 470
+ + E G + V S + +
Sbjct: 179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 238
Query: 471 TPKFKNSWFCH-----DNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525
++V D +++ S + + L V
Sbjct: 239 LASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAG-----KLSFGGRLDV------- 286
Query: 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST 585
P+ + + RF +D + +A + H S
Sbjct: 287 --------------PKQSSQRGLTARERFQN---LDKKASSEGSAAAG-AGLDSLHKNSV 328
Query: 586 YVLDVHP---FNPRIAMSAGYDGKTIVWDI 612
+ V + G DG +WD+
Sbjct: 329 SQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 78.7 bits (192), Expect = 9e-16
Identities = 37/330 (11%), Positives = 88/330 (26%), Gaps = 67/330 (20%)
Query: 288 ITDLAVSSNNALVASASNDCIIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQL 345
I+ A + + +A N+ + ++ + + L+ H VT + ++P ++
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN---RI 66
Query: 346 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405
++ D +W + + P + I R + A AP+
Sbjct: 67 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI------- 119
Query: 406 VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADS 465
+ + N + + + V + +
Sbjct: 120 -----------SICYFEQENDWWVCKHIKKP-----IRSTVLSLDW-------------- 149
Query: 466 SKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPP 525
+ S D I+ + + A +
Sbjct: 150 ------------HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 197
Query: 526 QPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTEST 585
G V+ + +S + V D +C+ +A V +L T
Sbjct: 198 SSSCGW-----------VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL 246
Query: 586 YVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615
+ + +A AG+D +++
Sbjct: 247 LAVTFITESSLVA--AGHDCFPVLFTYDSA 274
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.5 bits (168), Expect = 8e-13
Identities = 20/133 (15%), Positives = 36/133 (27%), Gaps = 3/133 (2%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 288
K + + + F V G D +++ ++A S G
Sbjct: 229 DADKKMAVATLASETLPLLAVTFITESSLVAAGHDCF-PVLFTYDSAAGKLSFGGRLDVP 287
Query: 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP-RPGSVYQLLS 347
+ A + D + H +V+ I+ Q +
Sbjct: 288 KQSSQRGLTARERFQNLDKKASSEGSAAA-GAGLDSLHKNSVSQISVLSGGKAKCSQFCT 346
Query: 348 SSDDGTCRIWDAR 360
+ DG IWD R
Sbjct: 347 TGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.2 bits (123), Expect = 2e-07
Identities = 23/196 (11%), Positives = 52/196 (26%), Gaps = 29/196 (14%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDI 288
+ + + V+ F +G V S D V + + +A+ +
Sbjct: 187 KMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL 246
Query: 289 TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348
+ + ++LVA+ DC ++ G +
Sbjct: 247 LAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR----------GL 295
Query: 349 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG---- 404
+ + D + S G A + + + + + G
Sbjct: 296 TARERFQNLDKKAS--------------SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 341
Query: 405 TVFVTGSSDTLARVWN 420
+ F T D +W+
Sbjct: 342 SQFCTTGMDGGMSIWD 357
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.4 bits (196), Expect = 8e-17
Identities = 34/296 (11%), Positives = 71/296 (23%), Gaps = 16/296 (5%)
Query: 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378
+ + GH +TA+ +P L+S S DG W + I ++ A
Sbjct: 5 VLKTISGHNKGITALTVNP-------LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA 57
Query: 379 GR-NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEID 437
+ + + T + +
Sbjct: 58 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 117
Query: 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWI 497
L+ + V+ Q + K + + + +I
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177
Query: 498 PRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557
Y L+ R I P ++ V
Sbjct: 178 AAGDVMG-----KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 232
Query: 558 AIMDCRICVWNAAD-GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612
+D I +++ ++ +L H + L + S+G D W++
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLV-SSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.7 bits (145), Expect = 3e-10
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 270 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL-PISVLRGHTA 328
+ + + LVA+ S D I ++ + + I L H
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259
Query: 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
V + + L+SS D + W+
Sbjct: 260 GVNNLLWETPS----TLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.7 bits (137), Expect = 3e-09
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY-CLASCRGHEGD 287
+ I + + V TGS D + I+S++ + + H+
Sbjct: 201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG 260
Query: 288 ITDLAVSSNNALVASASNDCIIRVWR 313
+ +L + + LV S+ D I+ W
Sbjct: 261 VNNLLWETPSTLV-SSGADACIKRWN 285
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 78.9 bits (192), Expect = 3e-16
Identities = 49/338 (14%), Positives = 87/338 (25%), Gaps = 46/338 (13%)
Query: 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAF 335
GH IT L+ S++ + SA + I W + G+ V H +T I
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 336 SPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395
+ + L + S D ++ A S + S Q
Sbjct: 64 TSK----GDLFTVSWDDHLKVVPAGGSGVDSSKAVAN-----------------KLSSQP 102
Query: 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455
A +A+G + V +A + S + V
Sbjct: 103 LGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHV 162
Query: 456 VASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYH 515
+ K P S +N + IP S ++ + A
Sbjct: 163 YKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF 222
Query: 516 LKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLV 575
+ P N + +D + VWN S
Sbjct: 223 HTAKVACVSWSPD-----------------------NVRLATGSLDNSVIVWNMNKPSDH 259
Query: 576 HSLTGHTESTYVLDVHPFNP-RIAMSAGYDGKTIVWDI 612
+ + ++ + +SAG D W++
Sbjct: 260 PIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 69.6 bits (168), Expect = 4e-13
Identities = 37/334 (11%), Positives = 86/334 (25%), Gaps = 43/334 (12%)
Query: 236 IKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVS 294
+ GH A+ G+ + + + + W + T H IT + +
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 295 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354
S L + +D + V G+ S + + + + +++
Sbjct: 65 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA-VAACYKHIA 123
Query: 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT 414
+ ++ + + + +A A + V + T
Sbjct: 124 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 183
Query: 415 LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474
N ++ + + ++ +
Sbjct: 184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH--------------TAKVAC 229
Query: 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534
+ + + T S D S I+W HP A+ +
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI--IIKGAHAMSS---------------- 271
Query: 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWN 568
VN ++W + +++A D I WN
Sbjct: 272 --------VNSVIWL-NETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 59.2 bits (141), Expect = 1e-09
Identities = 34/332 (10%), Positives = 64/332 (19%), Gaps = 46/332 (13%)
Query: 322 VLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN 381
V GH A+TA++ S G L S+ +G WD
Sbjct: 7 VRYGHNKAITALSSSA-DGKT--LFSADAEGHINSWDIS-------------------TG 44
Query: 382 MAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441
++ + I + G +F D L V N G
Sbjct: 45 ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 104
Query: 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 501
+ V S + S + +
Sbjct: 105 LAVSADGDIAVAA---------------CYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 149
Query: 502 RSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD 561
+ + + P +
Sbjct: 150 FVAVGGQDSKVHVY-------KLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK 202
Query: 562 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI--WEGIPIR 619
+ + + + D IVW++ PI
Sbjct: 203 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII 262
Query: 620 IYEISRFRLVDGKFSPDGASIILSDDVGQLYI 651
I V+ + +I+ + +
Sbjct: 263 IKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.7 bits (124), Expect = 1e-07
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA--YCLASCRGHEG 286
++ + H V C + + TGS D V +W+M + + H
Sbjct: 210 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAM 269
Query: 287 DITDLAVSSNNALVASASNDCIIRVWRLP 315
+ + N + SA D I+ W +P
Sbjct: 270 SSVNSVIWLNETTIVSAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.0 bits (117), Expect = 9e-07
Identities = 19/177 (10%), Positives = 45/177 (25%), Gaps = 5/177 (2%)
Query: 184 HMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHR 243
+ + + + A + + + K S
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASA 303
+V + + + S H + ++ S +N +A+
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242
Query: 304 SNDCIIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
S D + VW + PI + H + ++S+ D + W+
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET---TIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.8 bits (101), Expect = 1e-04
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY 621
GS+ GH ++ L + SA +G WDI GI R++
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLF-SADAEGHINSWDISTGISNRVF 50
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 0.001
Identities = 33/238 (13%), Positives = 62/238 (26%), Gaps = 19/238 (7%)
Query: 184 HMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVRGHR 243
H++ V A S A +
Sbjct: 77 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 136
Query: 244 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC-RGHEGDITDLAVSSNNALVAS 302
C ++V G D V ++ + A H +IT +A S+N A + +
Sbjct: 137 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA 196
Query: 303 ASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362
+ + + + ++ T +A +L + S D + +W+
Sbjct: 197 TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 256
Query: 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWN 420
P I G + N T V+ D+ + WN
Sbjct: 257 SDHPIIIK------------------GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.3 bits (178), Expect = 2e-14
Identities = 61/381 (16%), Positives = 114/381 (29%), Gaps = 90/381 (23%)
Query: 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITD 290
+Q I VYC +D + +++G D +KIW T C GH G +
Sbjct: 3 HSLQRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL- 59
Query: 291 LAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350
+ + ++ + S+D +RVW + G ++ L H AV + F+
Sbjct: 60 -CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS-----K 113
Query: 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410
D + +WD + H+ + + V+
Sbjct: 114 DRSIAVWDMASPTDITLRRVLVG-------------------HRAAVNVVDFDDKYIVSA 154
Query: 411 SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDS 470
S D +VWN + L+GH+ + +Q+
Sbjct: 155 SGDRTIKVWNT---------STCEFVRTLNGHKRGIACLQYRDR---------------- 189
Query: 471 TPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530
+V+ S D + +W L+V
Sbjct: 190 ------------LVVSGSSDNTIRLWDIECGA------------CLRVLEGHEELVRCIR 225
Query: 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 590
+RI+ + VW L + A + +L H+ + L
Sbjct: 226 FDNKRIVSGAYDGKIKVWDLVA----------ALDPRAPAGTLCLRTLVEHSGRVFRLQ- 274
Query: 591 HPFNPRIAMSAGYDGKTIVWD 611
F+ +S+ +D ++WD
Sbjct: 275 --FDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (140), Expect = 2e-09
Identities = 41/276 (14%), Positives = 83/276 (30%), Gaps = 32/276 (11%)
Query: 392 SHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQF 451
S ++C ++ V+G D ++W+ +L+GH V +Q+
Sbjct: 15 SKGVYCLQYD--DQKIVSGLRDNTIKIWDK---------NTLECKRILTGHTGSVLCLQY 63
Query: 452 SGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT 511
+ + S DS+ + + + A W
Sbjct: 64 DERVIITGSS--DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 512 QAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571
A + + + V D++++++A D I VWN +
Sbjct: 122 MASPTDITLRRVLVGHRA--------------AVNVVDFDDKYIVSASGDRTIKVWNTST 167
Query: 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG 631
V +L GH + R+ +S D +WDI G +R+ E +
Sbjct: 168 CEFVRTLNGHKRGIAC---LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVR 222
Query: 632 KFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQ 667
D I+ G++ + + +
Sbjct: 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 3e-09
Identities = 47/306 (15%), Positives = 83/306 (27%), Gaps = 94/306 (30%)
Query: 230 VQKMQNIKRVRGHRNAVYCAIFDRS----------------------------------- 254
++ + + GH +V C +D
Sbjct: 42 KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 101
Query: 255 ---GRYVITGSDDRLVKIWSMETAYCL-ASCRGHEGDITDLAVSSNNALVASASNDCIIR 310
++T S DR + +W M + + V ++ + SAS D I+
Sbjct: 102 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK 161
Query: 311 VWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370
VW + L GH + + + R ++S S D T R+WD
Sbjct: 162 VWNTSTCEFVRTLNGHKRGIACLQYRDR-----LVVSGSSDNTIRLWDIECGAC------ 210
Query: 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430
+ H+ + V+G+ D +VW+ +
Sbjct: 211 ----------------LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP 254
Query: 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRD 490
+ L H V +QF IV+ S D
Sbjct: 255 AGTLCLRTLVEHSGRVFRLQFDE----------------------------FQIVSSSHD 286
Query: 491 GSAIIW 496
+ +IW
Sbjct: 287 DTILIW 292
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 73.2 bits (178), Expect = 4e-14
Identities = 28/364 (7%), Positives = 75/364 (20%), Gaps = 42/364 (11%)
Query: 251 FDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGD-ITDLAVSSNNA-LVASASNDCI 308
Y+I + + + + + SC + ++ +N ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 309 IRVWRLPDGLPISVLR------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362
I L ++ + A SP VY ++ +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY---ATVNPTQRLNDHYVVK 120
Query: 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 422
++ P Q++ +G+++V G V
Sbjct: 121 PPRLEVFSTADGLEAKPVRT------FPMPRQVYLMRAADDGSLYVAGPDIYKMDVKT-- 172
Query: 423 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHD 482
L N + + + +
Sbjct: 173 ----------GKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 221
Query: 483 NIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQ------------PPRG 530
+ T + ++ ++H + + P P +
Sbjct: 222 DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ 281
Query: 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 590
+ + + + + V+N V ++
Sbjct: 282 RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341
Query: 591 HPFN 594
F
Sbjct: 342 QVFI 345
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 65.5 bits (158), Expect = 1e-11
Identities = 23/336 (6%), Positives = 75/336 (22%), Gaps = 17/336 (5%)
Query: 291 LAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSS 349
A+ + + + + + V + +P + Y + ++
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY--VLNN 59
Query: 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409
G D + + + V + + S P +++
Sbjct: 60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS--PDGKEVYATVNPTQRLNDHY 117
Query: 410 GSSDTLARVWNACK---PNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV---ASRFSLA 463
V++ + ++ ++ ++ YV +
Sbjct: 118 VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTV 177
Query: 464 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPM 523
+ K ++ S + +R K T +
Sbjct: 178 ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237
Query: 524 PPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTE 583
G + + + R+ ++ L+ +
Sbjct: 238 ----KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA-NLDH 292
Query: 584 STYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619
+ Y + ++ G V++ ++
Sbjct: 293 TYYCVAFDKKGDKLY-LGGTFNDLAVFNPDTLEKVK 327
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 45.1 bits (105), Expect = 5e-05
Identities = 33/311 (10%), Positives = 63/311 (20%), Gaps = 61/311 (19%)
Query: 160 GRGSFSLLSYDRDKGQNEIDHPPA-----HMRWPHMYADQVRGLGLREIGGGFTRHHRAP 214
+ D D +N + R + +A G + R +
Sbjct: 58 NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 117
Query: 215 SIRAACYAIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSME- 273
++ + + R VY G + G D + + + +
Sbjct: 118 VVKPPRLEVFSTADG--LEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKY 175
Query: 274 ---------------TAYCLASCRGHEGDITDL------AVSSNNALVASASNDCIIRVW 312
L + A+A
Sbjct: 176 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 235
Query: 313 RLPDGLPISVLRG-HTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIP 371
L G + T SP+ +D + +
Sbjct: 236 DLKTGKTHTQEFADLTELYFTGLRSPK----DPNQIYGVLNRLAKYDLKQRKLIKAA--- 288
Query: 372 RPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQ 431
H +C AF+ G G + V+N D+ +
Sbjct: 289 ------------------NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP------DTLE 324
Query: 432 PNHEIDVLSGH 442
I + G
Sbjct: 325 KVKNIKLPGGD 335
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 67.9 bits (164), Expect = 2e-12
Identities = 24/332 (7%), Positives = 67/332 (20%), Gaps = 23/332 (6%)
Query: 256 RYVITGSDDRLVKIWSMETAYCLASCRGHE--GDITDLAVSSNNA-LVASASNDCIIRVW 312
Y++ + + + E + V+ A+ + +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 313 RLPDGLPISVLRGHTA-----AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPR 367
L G + + T ++ A SP ++ S
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 368 IYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTD 427
A + +++ + + G+ + +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 428 DSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC 487
D S + D + + + +
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTA--------RKDIDPADPTAYRTGLLTMDLETGEMAM 233
Query: 488 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547
++ + + K + L+ + +P P +
Sbjct: 234 REVRIMDVFYFSTAVNPAKTRAFGAYNVLES-------FDLEKNASIKRVPLPHSYYSVN 286
Query: 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLT 579
S D V + ++A +
Sbjct: 287 VSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 58.3 bits (139), Expect = 3e-09
Identities = 31/320 (9%), Positives = 74/320 (23%), Gaps = 20/320 (6%)
Query: 299 LVASASNDCIIRVWRLPDGLPISVLRGHTA--AVTAIAFSPRPGSVYQLLSSSDDGTCRI 356
+ + + + V V+ A +P Y + + +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAY--ATVNKSESLVK 60
Query: 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLA 416
D + RI + P + V A S P + + T
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALS---PDGKTLAIYESPVRLELTHFEVQPTRV 117
Query: 417 RVWNACKPNTDDSDQPNHEIDVLSGHEND----VNYVQFSGCAVASRFSLADSSKEDSTP 472
+++A + + + +I +L+ + + + D +
Sbjct: 118 ALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEA 177
Query: 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532
+ G +R+ A L G
Sbjct: 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET-------GE 230
Query: 533 RQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHP 592
V +++ A + ++ + + + S Y ++V
Sbjct: 231 MAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVST 289
Query: 593 FNPRIAMSAGYDGKTIVWDI 612
+ G G +D
Sbjct: 290 DGSTVW-LGGALGDLAAYDA 308
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 54.0 bits (128), Expect = 7e-08
Identities = 34/330 (10%), Positives = 74/330 (22%), Gaps = 37/330 (11%)
Query: 345 LLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANG 404
+L+ + + D AV + P G
Sbjct: 4 ILAPARPDKLVVIDTE-------------KMAVDKVITIADAGPTPMV-----PMVAPGG 45
Query: 405 -TVFVTGSSDTLARVWNA--------CKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCA 455
+ T + + +T + + LS + +
Sbjct: 46 RIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRL 105
Query: 456 VASRFSLADSSK-----EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510
+ F + + E + + ++ +RDGS + + R A
Sbjct: 106 ELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGT 165
Query: 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMI--VWSLDNRFVLAAIMDCRICVWN 568
P + + D + +
Sbjct: 166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225
Query: 569 AADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL 628
G + + Y NP + G +D+ + I+ +
Sbjct: 226 LETGEMAMREVRIMDVFYF--STAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPH-SY 282
Query: 629 VDGKFSPDGASIILSDDVGQLYILNTGQGE 658
S DG+++ L +G L + E
Sbjct: 283 YSVNVSTDGSTVWLGGALGDLAAYDAETLE 312
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.1 bits (110), Expect = 1e-05
Identities = 11/163 (6%), Positives = 35/163 (21%), Gaps = 5/163 (3%)
Query: 179 DHPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKR 238
P + A + + F + TM + +
Sbjct: 174 SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM 233
Query: 239 VRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA 298
V+ + +++ + +E + + VS++ +
Sbjct: 234 REVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGS 292
Query: 299 LVASASNDCIIRVWRLPDGLPISVLR----GHTAAVTAIAFSP 337
V + + + + + F+
Sbjct: 293 TVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTR 335
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 62.7 bits (151), Expect = 2e-10
Identities = 55/421 (13%), Positives = 109/421 (25%), Gaps = 70/421 (16%)
Query: 252 DRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311
D + +T D + + ++ + + +S++ + D I +
Sbjct: 29 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDM 87
Query: 312 WRLPDGLPISVLR-----GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSP 366
L P V + ++ + I D P
Sbjct: 88 IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTI--AGAYWPPQFAIMDG--ETLEP 143
Query: 367 RIYIPRPSDAVAGRNMAPSSS----AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 422
+ + V + P H F G V + D +
Sbjct: 144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD-----IDNL 198
Query: 423 KPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW---- 478
+ + + S H + S S K +
Sbjct: 199 TVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN 258
Query: 479 FCHDN----IVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQ 534
F H T +I I ++HP+ A W + L+ GG
Sbjct: 259 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA-WKKVAELQGQ----------GGGSL 307
Query: 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD----- 589
I P+ ++ V D F A + + V++ + + + E + +
Sbjct: 308 FIKTHPKSSHLYV---DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV 364
Query: 590 VHP-FNPRIAMSAGYDGKTIVWDIWEGIP----IRIY---------EISRFRLV--DGKF 633
V P +N G + + +W G + + + RL+ GKF
Sbjct: 365 VQPEYNK--------RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGKF 416
Query: 634 S 634
+
Sbjct: 417 N 417
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 61.5 bits (148), Expect = 3e-10
Identities = 44/370 (11%), Positives = 92/370 (24%), Gaps = 33/370 (8%)
Query: 291 LAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350
+ N + + I + + V+ AV S +
Sbjct: 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLL---VIGR 81
Query: 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG 410
D + D + + I +A R++ S G + A+ + G
Sbjct: 82 DARIDMIDLWAKEPTKVAEIKIGIEA---RSVESSKFKGYEDRYTIAGAYWPPQFAIMDG 138
Query: 411 SSDTLARVWNACKPNTDDSDQP--NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468
+ ++ + D +++ HE+ V + D
Sbjct: 139 ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL 198
Query: 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528
T + F D + + + K A + P
Sbjct: 199 TVT-SIGAAPFLAD--GGWDSSHRYFMT---AANNSNKVAVIDSKDRRLSALVDVGKTPH 252
Query: 529 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588
G + P V D L + V L G + +
Sbjct: 253 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY---AWKKVAELQGQGGGSLFI 309
Query: 589 DVHPFNPRIAMSA-----GYDGKTI-VWDIWEGIPIR----IYEISRF-----RLVDGKF 633
HP + + + +++ V+D+ I E + R+V ++
Sbjct: 310 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 369
Query: 634 SPDGASIILS 643
+ G + S
Sbjct: 370 NKRGDEVWFS 379
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.8 bits (89), Expect = 0.004
Identities = 20/143 (13%), Positives = 39/143 (27%), Gaps = 7/143 (4%)
Query: 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL-----VHSLTGHTESTYVLD 589
+++ T V++ S R++L D RI + + +
Sbjct: 56 KVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKF 115
Query: 590 VHPFNPRIAMSAGYDGKTIVWD--IWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG 647
+ A + + + D E I P A+II S +
Sbjct: 116 KGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP 175
Query: 648 QLYILNTGQGESQKDAKYDQFFL 670
+ + G+ D L
Sbjct: 176 EFIVNVKETGKVLLVNYKDIDNL 198
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 59.4 bits (142), Expect = 1e-09
Identities = 36/331 (10%), Positives = 73/331 (22%), Gaps = 27/331 (8%)
Query: 301 ASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY-------QLLSSSDDGT 353
A + V G I ++ G + + + ++
Sbjct: 22 AHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDY 79
Query: 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD 413
++D + I +P P G + +
Sbjct: 80 VEVFDPVTLLPTADIELPDA----------PRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 129
Query: 414 TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFS--GCAVASRFSLADSSKEDST 471
+ V K D P+ + G F + + T
Sbjct: 130 AVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 186
Query: 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG- 530
F N S+ ++W + + H A L + G
Sbjct: 187 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW 246
Query: 531 --GPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588
G Q++ + + + V +A G + E +
Sbjct: 247 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSIN 306
Query: 589 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619
P + + D + D G +R
Sbjct: 307 VSQDEKPLLYALSTGDKTLYIHDAESGEELR 337
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.6 bits (106), Expect = 3e-05
Identities = 14/206 (6%), Positives = 42/206 (20%), Gaps = 31/206 (15%)
Query: 184 HMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRVR--- 240
+ + + ++ + AP + + + +
Sbjct: 128 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE 187
Query: 241 ----GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMET--AYCLASCRGHEGDITDLA-- 292
+ + + ++ + + + + A L +
Sbjct: 188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 247
Query: 293 ------------------VSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIA 334
+ + + V G ++ + +I
Sbjct: 248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSIN 306
Query: 335 FSPRPGSVYQLLSSSDDGTCRIWDAR 360
S S+ D T I DA
Sbjct: 307 VSQD-EKPLLYALSTGDKTLYIHDAE 331
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 58.3 bits (139), Expect = 3e-09
Identities = 38/343 (11%), Positives = 80/343 (23%), Gaps = 35/343 (10%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDD--RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNA 298
+ + + I+ T + G++ + V N
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG-KAEKFEENLGNVFAMGVDRNGK 98
Query: 299 LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWD 358
A++ I L G P + R A +T S + T
Sbjct: 99 FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 158
Query: 359 ARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARV 418
+ + ++ + AF+A+ S +L
Sbjct: 159 QAIHVYDMEGRKIFAAT--------------TENSHDYAPAFDADSKNLYYLSYRSLDPS 204
Query: 419 WNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478
+ + S + + V+ N + S S A + K +
Sbjct: 205 PDRV--VLNFSFEVVSKPFVIPLIPGSPNPTKLVP---RSMTSEAGEYDLNDMYKRSSPI 259
Query: 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA---YHLKVPPPPMPPQPPRGGPRQR 535
+ I I AA + A L ++
Sbjct: 260 NVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK----------TRK 309
Query: 536 ILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL 578
+ + + S D + V+ D +I + ++
Sbjct: 310 VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 56.8 bits (135), Expect = 8e-09
Identities = 38/396 (9%), Positives = 87/396 (21%), Gaps = 61/396 (15%)
Query: 295 SNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354
+ L+A S + + + V + + + + + +
Sbjct: 13 LDGDLIAFVSRG-QAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAF-IHGTREGDFL 68
Query: 355 RIWDA------RYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 408
I+D ++ + ++ +A +
Sbjct: 69 GIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA 128
Query: 409 TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468
+ T++ + + H D+ + + E
Sbjct: 129 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-----------TTE 177
Query: 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528
+S N+ S + L
Sbjct: 178 NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL------------ 225
Query: 529 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC----RICVWNAADGSLVHSLTGHTES 584
P N + A D + D + S
Sbjct: 226 ----------IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS 275
Query: 585 TYVLDVHPFNPRIAM--SAGYDGKTIVWDIWEGIPIRIYE-ISRFRLVDGKFSPDGASII 641
+ V A A G + +D+ + ++ R S D +++
Sbjct: 276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLR-----LSADRKTVM 330
Query: 642 LSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLV 677
+ D G++Y + E ++ D RPLV
Sbjct: 331 VRKDDGKIYTFPLEKPED------ERTVETDKRPLV 360
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 55.3 bits (131), Expect = 3e-08
Identities = 15/256 (5%), Positives = 39/256 (15%), Gaps = 41/256 (16%)
Query: 180 HPPAHMRWPHMYADQVRGLGLREIGGGFTRHHRAPSIRAACYAIAKPSTMVQKMQNIKRV 239
+ + + Y + + + I
Sbjct: 115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 174
Query: 240 RGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC-------LASCRGHEGDITDLA 292
+ Y FD + + S L G
Sbjct: 175 TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 234
Query: 293 VSSNNALVASAS-------NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQL 345
+ + + D I L +
Sbjct: 235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEF---AAYY 291
Query: 346 LSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT 405
+ + G +D + + + + +A+
Sbjct: 292 QGAPEKGVLLKYDVK------------------------TRKVTEVKNNLTDLRLSADRK 327
Query: 406 VFVTGSSDTLARVWNA 421
+ D +
Sbjct: 328 TVMVRKDDGKIYTFPL 343
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 56.7 bits (136), Expect = 1e-08
Identities = 51/419 (12%), Positives = 102/419 (24%), Gaps = 57/419 (13%)
Query: 241 GHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALV 300
R +D + +T D + + T + +S++ +
Sbjct: 18 EDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYL 76
Query: 301 ASASNDCIIRVWRLPDG-----LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355
D + + L I + + T+ +
Sbjct: 77 FVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI--AGAYWPPQYV 134
Query: 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTL 415
I D + P + R M ++ + F+ +T
Sbjct: 135 IMDGETLE---------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET- 184
Query: 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475
++ + D + +D G + R+ + ++ K
Sbjct: 185 GKILLV---DYTDLNNLKTTEISAERFLHDG------GLDGSHRYFITAANAR---NKLV 232
Query: 476 NSWFCHDNIVTCSRDGSAIIWIPRSRR-SHPKAARWTQAYHL---KVPPPPMPPQ--PPR 529
+V G R HP H+ V P+ P
Sbjct: 233 VIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN 292
Query: 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD 589
P G ++ + + N + + + S
Sbjct: 293 AWKILDSFPALGGGSLFIKTHPNS------QYLYVDATLNPEAEISGS------------ 334
Query: 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQ 648
V F+ + G D + I E I E R+V G+F+ DG + S G+
Sbjct: 335 VAVFDIKAMTGDGSDPEFKTLPIAEW--AGITEGQP-RVVQGEFNKDGTEVWFSVWNGK 390
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 42.5 bits (99), Expect = 3e-04
Identities = 15/131 (11%), Positives = 39/131 (29%), Gaps = 7/131 (5%)
Query: 535 RILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSL-----VHSLTGHTESTYVLD 589
+L T V++ S R++ D ++ + + + +
Sbjct: 56 TVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKM 115
Query: 590 VHPFNPRIAMSAGYDGKTIVWD--IWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVG 647
+ A + + ++ D E I+ + + P A+I+ S
Sbjct: 116 EGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP 175
Query: 648 QLYILNTGQGE 658
+ + G+
Sbjct: 176 EFIVNVKETGK 186
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 49.1 bits (115), Expect = 2e-06
Identities = 35/326 (10%), Positives = 70/326 (21%), Gaps = 27/326 (8%)
Query: 259 ITGSDDRLVKIWSMETAYCLASCR--GHEGDITDLAVSSN-NALVASASNDCIIRVWRLP 315
I + + + +W++ L + G + + VS + L + + +R+
Sbjct: 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67
Query: 316 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375
A+T A S PGS+ + + + S
Sbjct: 68 PD---------DGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV 118
Query: 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHE 435
V H N + D
Sbjct: 119 GVVDVVE-----GLDGCHSANISPDNR-----TLWVPALKQDRICLFTVSDDGHLVAQDP 168
Query: 436 IDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAII 495
+V + ++ F + +S D +
Sbjct: 169 AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 228
Query: 496 WIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI--LPTPRGVNMIVWSLDNR 553
+ R A + G + PT +
Sbjct: 229 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGK 288
Query: 554 FVLAAIMDC-RICVW--NAADGSLVH 576
+++AA I V+ G L
Sbjct: 289 YLIAAGQKSHHISVYEIVGEQGLLHE 314
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 33/323 (10%), Positives = 67/323 (20%), Gaps = 49/323 (15%)
Query: 259 ITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL 318
I S+ + + + + A+
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSN-------------------------------- 33
Query: 319 PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378
SP VY ++++ I D + + VA
Sbjct: 34 -----------PMGAVISPDGTKVY--VANAHSNDVSIIDTATNNVIATVPAGSSPQGVA 80
Query: 379 GRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDV 438
+ + TV T + N + V
Sbjct: 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTV 140
Query: 439 LSGHENDVNYVQFSGC--AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIW 496
+ + + D +K S D + D +
Sbjct: 141 SVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA 200
Query: 497 IPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 556
P +P+ + K RI P I + D + V
Sbjct: 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI-PVGPDPAGIAVTPDGKKVY 259
Query: 557 AAI-MDCRICVWNAADGSLVHSL 578
A+ + V + A ++ ++
Sbjct: 260 VALSFCNTVSVIDTATNTITATM 282
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 45.6 bits (106), Expect = 3e-05
Identities = 25/295 (8%), Positives = 70/295 (23%), Gaps = 45/295 (15%)
Query: 341 SVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAF 400
S + +++S+ + D ++ + I G
Sbjct: 1 STFAYIANSESDNISVIDVTSNKVTATI------------------PVGSNPMGA---VI 39
Query: 401 NANGT-VFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459
+ +GT V+V + + + N + ++ + + +
Sbjct: 40 SPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLS 99
Query: 460 FSLADSSKEDSTPKFKNS-----------------WFCHDNIVTCSRDGSAIIWI----- 497
S+ T K S V + + I +
Sbjct: 100 VIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS 159
Query: 498 PRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557
P+ P + A + + ++ P G+ +
Sbjct: 160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV 219
Query: 558 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612
+ + + + + + + V P ++ ++ + V D
Sbjct: 220 DKYFNTVSMIDTGTNKITARIPVGPDPAGI-AVTPDGKKVYVALSFCNTVSVIDT 273
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.5 bits (96), Expect = 7e-04
Identities = 30/369 (8%), Positives = 68/369 (18%), Gaps = 66/369 (17%)
Query: 325 GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAP 384
+ + L + GT W + ++
Sbjct: 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAG--CGVTLGHSLGAFLSLAVAGH 74
Query: 385 SSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS-DQPNHEIDVLSGHE 443
S S + + G V++ + P+ +
Sbjct: 75 SGS--------DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126
Query: 444 NDVNYVQFSGCAVASRFSLADSSKED-STPKFKNSWFCHD----------NIVTCSRDGS 492
+ + S C + F + ++ S S
Sbjct: 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPAS 186
Query: 493 AIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552
+ + +
Sbjct: 187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAA-----------------------QANYPG 223
Query: 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612
V A AA ++ ++ G+ + ++ ++ + I+
Sbjct: 224 MLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM-VAKLKNTDGIMILT 282
Query: 613 WEGIPIRIYEISRFRLVDGK------------------FSPDGASIIL--SDDVGQLYIL 652
E + V + DGAS S L I
Sbjct: 283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIY 342
Query: 653 NTGQGESQK 661
+ + Q
Sbjct: 343 DAASDQDQS 351
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1491 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.97 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.97 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.96 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.96 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.96 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.93 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.92 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.92 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.92 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.9 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.89 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.89 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.85 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.84 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.8 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.8 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.72 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.68 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.49 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.44 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.44 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.37 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.35 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.35 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.34 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.33 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.28 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.21 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.21 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.18 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.12 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.04 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.94 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.89 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.65 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.5 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.44 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.3 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.29 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.28 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.25 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.18 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.96 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.58 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.44 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.33 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.23 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.09 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.9 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.48 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.38 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.05 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.9 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.24 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.07 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.05 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.5 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 93.96 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 93.87 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 89.34 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 82.02 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=313.72 Aligned_cols=311 Identities=20% Similarity=0.319 Sum_probs=275.4
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 30589981679878999996899999999089769999878891889970689996999995799999999799819999
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 233 ~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIW 312 (1491)
....++|+||.++|++|+|+|++++||||+.||+|+|||+.+++++.++.+|...|.+++|++++.+++++..++.+.+|
T Consensus 7 ~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 86 (317)
T d1vyhc1 7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 86 (317)
T ss_dssp SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred CCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 98448985888876899993898999999389929999899997999995788867777630111101111111110111
Q ss_pred ECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79999860331267775599995379995079999928991999706778765425137999732488878888899999
Q 000454 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 313 Dl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~ 392 (1491)
+.........+.+|...+.++.|++++. .+++++.|+.+++|++.++.....+. .+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~--------------------~~~ 143 (317)
T d1vyhc1 87 DFQGFECIRTMHGHDHNVSSVSIMPNGD---HIVSASRDKTIKMWEVQTGYCVKTFT--------------------GHR 143 (317)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECSSSS---EEEEEETTSEEEEEETTTCCEEEEEE--------------------CCS
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCC---EEEEECCCCCEEEEECCCCEEEEEEC--------------------CCC
T ss_conf 0011111111000000000000169985---57765267523575114430346871--------------------677
Q ss_pred CCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 63289998779988999308951999808999998999998402210488898107998267512223335688788886
Q 000454 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1491)
Q Consensus 393 ~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~ 472 (1491)
..+.+++|++++.+|++++.|+.|++|++.. ......+.+|...+.++.|.|.....
T Consensus 144 ~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~-------------- 200 (317)
T d1vyhc1 144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVAT---------KECKAELREHRHVVECISWAPESSYS-------------- 200 (317)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTT---------CCEEEEECCCSSCEEEEEECCSCGGG--------------
T ss_pred CCCEEEECCCCCCEEEEEECCCEEEEEEECC---------CEEEEEEECCCCCCEEEEEEECCCCC--------------
T ss_conf 7630000166799999992798299975125---------40347882477873379986325641--------------
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCC
Q ss_conf 45555567880899927980999926888888532221111245799999999999999940006999972299994799
Q 000454 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1491)
Q Consensus 473 ~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG 552 (1491)
... .........+...+
T Consensus 201 ------------~~~---------------------------------------------------~~~~~~~~~~~~~~ 217 (317)
T d1vyhc1 201 ------------SIS---------------------------------------------------EATGSETKKSGKPG 217 (317)
T ss_dssp ------------GGG---------------------------------------------------GCCSCC-------C
T ss_pred ------------EEE---------------------------------------------------CCCCCEEEEECCCC
T ss_conf ------------110---------------------------------------------------34563034302588
Q ss_pred CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEE
Q ss_conf 89999954663999988999458998079988499999139994999995899199996899922899860786468999
Q 000454 553 RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGK 632 (1491)
Q Consensus 553 ~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~VtsIa 632 (1491)
.++++++.|+.|++|++.+++++..+.+|...|.+++|+| ++.+|++++.||.|+|||+.+++++..+..|...|++++
T Consensus 218 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~ 296 (317)
T d1vyhc1 218 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD 296 (317)
T ss_dssp CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEE
T ss_pred CEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEE
T ss_conf 6147516997899988899968899968899879999879-999999997989499999999919999928999889999
Q ss_pred ECCCCCEEEEEECCCCEEEEE
Q ss_conf 948999999995898199999
Q 000454 633 FSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 633 fSPDG~~LAsgs~DG~I~IWd 653 (1491)
|+|++++|++++.||.|+||+
T Consensus 297 ~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 297 FHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp ECSSSSCEEEEETTSEEEEEC
T ss_pred ECCCCCEEEEEECCCEEEEEC
T ss_conf 949999999992899499829
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-44 Score=299.68 Aligned_cols=289 Identities=16% Similarity=0.253 Sum_probs=223.8
Q ss_pred CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE-----EEEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 34305899816798789999968999999990897699998788918-----8997068999699999579999999979
Q 000454 231 QKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC-----LASCRGHEGDITDLAVSSNNALVASASN 305 (1491)
Q Consensus 231 ~t~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~-----l~tL~gH~~~ItsIafSPDg~lLASGS~ 305 (1491)
...+.++++ +|...|+|++|+|+|++||+|+ ||.|+|||+.++.. .....+|...|.+++|+|++++|++++.
T Consensus 40 ~~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~ 117 (337)
T d1gxra_ 40 RHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE 117 (337)
T ss_dssp SEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred CCCEEEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 875499987-9999289999989999999997-99889977367763311687640488996899998679988988612
Q ss_pred CCEEEEEECCCC--CCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 981999979999--860331267775599995379995079999928991999706778765425137999732488878
Q 000454 306 DCIIRVWRLPDG--LPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMA 383 (1491)
Q Consensus 306 DGtIrIWDl~tg--k~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~ 383 (1491)
|+.|++|++... .....+..|...|.+++|+|++. ++++++.++.|.+|++.++.+....
T Consensus 118 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~~~d~~i~~~~~~~~~~~~~~--------------- 179 (337)
T d1gxra_ 118 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK---VCFSCCSDGNIAVWDLHNQTLVRQF--------------- 179 (337)
T ss_dssp SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS---EEEEEETTSCEEEEETTTTEEEEEE---------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCC---------------
T ss_conf 3321111111111111111111111111111111111---1111111111111111111111111---------------
Q ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 88889999963289998779988999308951999808999998999998402210488898107998267512223335
Q 000454 384 PSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLA 463 (1491)
Q Consensus 384 ~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~ 463 (1491)
..+...+.+++|++++..+++++.|+.|++|+++++ ..+..+ .
T Consensus 180 -----~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~---------~~~~~~-~---------------------- 222 (337)
T d1gxra_ 180 -----QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---------RQLQQH-D---------------------- 222 (337)
T ss_dssp -----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------EEEEEE-E----------------------
T ss_pred -----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------EEECCC-C----------------------
T ss_conf -----111111110123444321122356655321111110---------000024-6----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCE
Q ss_conf 68878888645555567880899927980999926888888532221111245799999999999999940006999972
Q 000454 464 DSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGV 543 (1491)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~V 543 (1491)
+...|
T Consensus 223 ---------------------------------------------------------------------------~~~~i 227 (337)
T d1gxra_ 223 ---------------------------------------------------------------------------FTSQI 227 (337)
T ss_dssp ---------------------------------------------------------------------------CSSCE
T ss_pred ---------------------------------------------------------------------------CCCCE
T ss_conf ---------------------------------------------------------------------------66615
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEE
Q ss_conf 29999479989999954663999988999458998079988499999139994999995899199996899922899860
Q 000454 544 NMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI 623 (1491)
Q Consensus 544 tsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~ 623 (1491)
.+++|+|++.+|++++.|+.|++|++..+... ....|...|++++|+| ++.+|++++.||.|++||+.+++++..+.
T Consensus 228 ~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~-~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~- 304 (337)
T d1gxra_ 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK- 304 (337)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred EEEEECCCCCCCCEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEECC-
T ss_conf 79997153030000002564211111111100-0012456541699989-99999999489969999899997999926-
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 7864689999489999999958981999998
Q 000454 624 SRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 624 h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
|...|++++|+|++++|++++.||.|+||++
T Consensus 305 ~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf 9998799999279999999908996999977
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.2e-45 Score=302.54 Aligned_cols=306 Identities=22% Similarity=0.390 Sum_probs=195.5
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE------------------CCCCCEEEEEECCCCC
Q ss_conf 9981679878999996899999999089769999878891889970------------------6899969999957999
Q 000454 237 KRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR------------------GHEGDITDLAVSSNNA 298 (1491)
Q Consensus 237 ~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~------------------gH~~~ItsIafSPDg~ 298 (1491)
....+|.+.|+||+|+|||++||+|+ |+.|+||++.+++++..+. +|...|.+++|+|+++
T Consensus 56 ~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ 134 (388)
T d1erja_ 56 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 134 (388)
T ss_dssp EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 76079999689999999999999994-99489998136405766316654432443211101467789889999889998
Q ss_pred EEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCC
Q ss_conf 99999799819999799998603312677755999953799950799999289919997067787654251379997324
Q 000454 299 LVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVA 378 (1491)
Q Consensus 299 lLASGS~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~ 378 (1491)
+|++|+.||.|++|+...++.+..+.+|...|.++.|++++. .+++++.++.|++||..+........
T Consensus 135 ~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~~~~~~~~~i~~~d~~~~~~~~~~~--------- 202 (388)
T d1erja_ 135 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD---KLVSGSGDRTVRIWDLRTGQCSLTLS--------- 202 (388)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---EEEEEETTSEEEEEETTTTEEEEEEE---------
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEEEEEECCCCCCCCCCC---------
T ss_conf 012134441111211111111111111111111101111111---11122210156541011111100001---------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEE-CCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCC
Q ss_conf 8887888889999963289998-779988999308951999808999998999998402210488898107998267512
Q 000454 379 GRNMAPSSSAGPQSHQIFCCAF-NANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVA 457 (1491)
Q Consensus 379 g~~~~~~~~~~~h~~~V~sIaf-SPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~a 457 (1491)
+.....++.+ .+++.+|++++.|+.|++|+..++...... ........+|...|.++.|+|++
T Consensus 203 ------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~-- 266 (388)
T d1erja_ 203 ------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL--DSENESGTGHKDSVYSVVFTRDG-- 266 (388)
T ss_dssp ------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE--C------CCCSSCEEEEEECTTS--
T ss_pred ------------CCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEE--CCCCCCCCCCCCCEEEEEECCCC--
T ss_conf ------------24544211236887875899738981999634557300010--24433345778987899997999--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 22333568878888645555567880899927980999926888888532221111245799999999999999940006
Q 000454 458 SRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL 537 (1491)
Q Consensus 458 s~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 537 (1491)
..|++++.||.|++||+.......... ............
T Consensus 267 ------------------------~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------~~~~~~~~~~~~ 305 (388)
T d1erja_ 267 ------------------------QSVVSGSLDRSVKLWNLQNANNKSDSK-----------------TPNSGTCEVTYI 305 (388)
T ss_dssp ------------------------SEEEEEETTSEEEEEEC--------------------------------CEEEEEE
T ss_pred ------------------------CEEEEEECCCCEEEEECCCCCCCCCCC-----------------CCCCCCEEEECC
T ss_conf ------------------------999999789928987515776432101-----------------344420011012
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECC-----CCCEEEEEECCCCEEEEEC
Q ss_conf 99997229999479989999954663999988999458998079988499999139-----9949999958991999968
Q 000454 538 PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPF-----NPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 538 ~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPd-----d~~lLaSgS~DGtIrIWDl 612 (1491)
.|...|.+++|+|++++|++|+.||.|++||+.+++++.++.+|.+.|+++++++. ++.+|++|+.||.|+||++
T Consensus 306 ~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385 (388)
T ss_dssp CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEE
T ss_conf 45532789998899999999969897999999999699999688997899998467425899999999918997999762
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-43 Score=292.85 Aligned_cols=288 Identities=14% Similarity=0.165 Sum_probs=203.6
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEE-----EECCCCCCEEEEEECCCCCCEEEEEEEEC
Q ss_conf 1889970689996999995799999999799819999799998603-----31267775599995379995079999928
Q 000454 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS-----VLRGHTAAVTAIAFSPRPGSVYQLLSSSD 350 (1491)
Q Consensus 276 ~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~-----~L~gHs~~VtsIafSPdg~s~~~LiSgS~ 350 (1491)
+.+.++ .|...|.+++|+|++++||+|+ ||.|+|||+.++.... ...+|.+.|.+++|+|++. +|++++.
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~---~l~s~~~ 117 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC---TLIVGGE 117 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS---EEEEEES
T ss_pred EEEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCC---EEEEEEC
T ss_conf 499987-9999289999989999999997-9988997736776331168764048899689999867998---8988612
Q ss_pred CCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf 99199970677876542513799973248887888889999963289998779988999308951999808999998999
Q 000454 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSD 430 (1491)
Q Consensus 351 DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~ 430 (1491)
||.|++||+........... ..+...+.+++|+|++.++++++.++.|++|++.
T Consensus 118 dg~i~iwd~~~~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~-------- 171 (337)
T d1gxra_ 118 ASTLSIWDLAAPTPRIKAEL------------------TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-------- 171 (337)
T ss_dssp SSEEEEEECCCC--EEEEEE------------------ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT--------
T ss_pred CCCCCCCCCCCCCCCCCCCC------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------
T ss_conf 33211111111111111111------------------1111111111111111111111111111111111--------
Q ss_pred CCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCC
Q ss_conf 99840221048889810799826751222333568878888645555567880899927980999926888888532221
Q 000454 431 QPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 431 ~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
+.+
T Consensus 172 ---------------------------------------------------------------------~~~-------- 174 (337)
T d1gxra_ 172 ---------------------------------------------------------------------NQT-------- 174 (337)
T ss_dssp ---------------------------------------------------------------------TTE--------
T ss_pred ---------------------------------------------------------------------CCC--------
T ss_conf ---------------------------------------------------------------------111--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 11124579999999999999994000699997229999479989999954663999988999458998079988499999
Q 000454 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDV 590 (1491)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIaf 590 (1491)
.......|...+.+++|++++.++++++.|+.|++||+.+++.+..+. |...|.+++|
T Consensus 175 ---------------------~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~ 232 (337)
T d1gxra_ 175 ---------------------LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGY 232 (337)
T ss_dssp ---------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEE
T ss_pred ---------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCEEEEEE
T ss_conf ---------------------111111111111101234443211223566553211111100000246-6661579997
Q ss_pred ECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEEC
Q ss_conf 13999499999589919999689992289986078646899994899999999589819999989983124651003560
Q 000454 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFL 670 (1491)
Q Consensus 591 SPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl~tGk~~~~~~~~~~fs 670 (1491)
+| ++.++++++.|+.|++|++..+..... ..|...|++++|+|+|++|++++.||.|++|++.+++.+...
T Consensus 233 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~------- 303 (337)
T d1gxra_ 233 CP-TGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS------- 303 (337)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTSSCEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-------
T ss_pred CC-CCCCCCEECCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEC-------
T ss_conf 15-303000000256421111111110000-124565416999899999999948996999989999799992-------
Q ss_pred CCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCEEEEEECCCCCCCEE
Q ss_conf 89862698169977971132357422379856556677899941001110015400189958998299951888898089
Q 000454 671 GDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQ 750 (1491)
Q Consensus 671 ~D~r~Li~d~~g~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~S~D~~v~ 750 (1491)
. +...+..++|+|++++|+++ +.|+.+.
T Consensus 304 --------~-----------------------------------------~~~~v~~~~~s~d~~~l~t~---s~D~~I~ 331 (337)
T d1gxra_ 304 --------K-----------------------------------------ESSSVLSCDISVDDKYIVTG---SGDKKAT 331 (337)
T ss_dssp --------E-----------------------------------------CSSCEEEEEECTTSCEEEEE---ETTSCEE
T ss_pred --------C-----------------------------------------CCCCEEEEEEECCCCEEEEE---ECCCEEE
T ss_conf --------6-----------------------------------------99987999992799999999---0899699
Q ss_pred ECCC
Q ss_conf 3127
Q 000454 751 LQPL 754 (1491)
Q Consensus 751 lwp~ 754 (1491)
+|++
T Consensus 332 vWdl 335 (337)
T d1gxra_ 332 VYEV 335 (337)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9977
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.8e-43 Score=288.86 Aligned_cols=292 Identities=22% Similarity=0.362 Sum_probs=221.4
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 30589981679878999996899999999089769999878891889970689996999995799999999799819999
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 233 ~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIW 312 (1491)
++..++|+||.+.|+|++|+|++.+||||+.||+|+|||+.++..+..+.+|...|.+++|+|++.++++++.|+.+++|
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred EEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECC
T ss_conf 06527988878988899998999999999789955563102102579972465337756760121144310133201013
Q ss_pred ECCCCC----CEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 799998----6033126777559999537999507999992899199970677876542513799973248887888889
Q 000454 313 RLPDGL----PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1491)
Q Consensus 313 Dl~tgk----~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~ 388 (1491)
+..... ....+.+|...+....+.... .++....+.....|............
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 181 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVTSSGDTTCALWDIETGQQTTTFT------------------- 181 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEETT----EEEEEETTTEEEEEETTTTEEEEEEE-------------------
T ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCC-------------------
T ss_conf 3222212221110013542110111111111----11111244543200123221111123-------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99996328999877998899930895199980899999899999840221048889810799826751222333568878
Q 000454 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1491)
Q Consensus 389 ~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~ 468 (1491)
.....+.+..+.+.+.++++++.|+.|++||+.+ ...+..+.+|...|.+++|+|++
T Consensus 182 -~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~---------~~~~~~~~~h~~~i~~v~~~p~~------------- 238 (340)
T d1tbga_ 182 -GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE---------GMCRQTFTGHESDINAICFFPNG------------- 238 (340)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT---------TEEEEEECCCSSCEEEEEECTTS-------------
T ss_pred -CCCEEEEEECCCCCCCEEEEEECCCEEEEEECCC---------CCEEEEEECCCCCEEEEEECCCC-------------
T ss_conf -3101576300124421268760573699999999---------94889995788985899997998-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEE
Q ss_conf 88864555556788089992798099992688888853222111124579999999999999994000699997229999
Q 000454 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1491)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIaf 548 (1491)
..|++++.||.|++|++....... ......+...+.+++|
T Consensus 239 -------------~~l~s~s~d~~i~~~~~~~~~~~~---------------------------~~~~~~~~~~i~~~~~ 278 (340)
T d1tbga_ 239 -------------NAFATGSDDATCRLFDLRADQELM---------------------------TYSHDNIICGITSVSF 278 (340)
T ss_dssp -------------SEEEEEETTSCEEEEETTTTEEEE---------------------------EECCTTCCSCEEEEEE
T ss_pred -------------CEEEEEECCCEEEEEEECCCCCCC---------------------------CCCCCCCCCCEEEEEE
T ss_conf -------------999999699969997521221111---------------------------1112244574589999
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 479989999954663999988999458998079988499999139994999995899199996
Q 000454 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 549 SPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
+|++++|++|+.||.|++||+.+++++.++.+|.+.|++++|+| ++.+|++|+.||.|+|||
T Consensus 279 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEEC-CCCEEEEECCCCEEEEEC
T ss_conf 89999999997979899999999939899848999789999908-999999990699799859
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.4e-43 Score=288.58 Aligned_cols=313 Identities=17% Similarity=0.266 Sum_probs=249.7
Q ss_pred EECCCEEEEEECCCCEE----EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEC------------
Q ss_conf 90897699998788918----89970689996999995799999999799819999799998603312------------
Q 000454 261 GSDDRLVKIWSMETAYC----LASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR------------ 324 (1491)
Q Consensus 261 GS~DGtIkIWDl~Tg~~----l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~L~------------ 324 (1491)
+..++.+.+|+....+. +....+|.+.|+||+|+|+|++||+|+ |+.|+||++.++..+..+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~ 112 (388)
T d1erja_ 34 KQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENL 112 (388)
T ss_dssp EECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------
T ss_pred CCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCC
T ss_conf 688970898688777620541076079999689999999999999994-9948999813640576631665443244321
Q ss_pred ------CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf ------67775599995379995079999928991999706778765425137999732488878888899999632899
Q 000454 325 ------GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCC 398 (1491)
Q Consensus 325 ------gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sI 398 (1491)
.|...|++++|+|++. +|++++.||.|++|+...++..... ..|...|.++
T Consensus 113 ~~~~~~~~~~~V~~l~~s~~~~---~l~s~~~dg~v~i~~~~~~~~~~~~--------------------~~h~~~v~~~ 169 (388)
T d1erja_ 113 NTSSSPSSDLYIRSVCFSPDGK---FLATGAEDRLIRIWDIENRKIVMIL--------------------QGHEQDIYSL 169 (388)
T ss_dssp ------CCCCBEEEEEECTTSS---EEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSSCEEEE
T ss_pred CCCCCCCCCCCEEEEEECCCCC---CCEECCCCCCCCCCCCCCCCCCCCC--------------------CCCCCCCCCC
T ss_conf 1101467789889999889998---0121344411112111111111111--------------------1111111110
Q ss_pred EECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98779988999308951999808999998999998402210488898107998267512223335688788886455555
Q 000454 399 AFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 399 afSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
+|++++..+++++.++.+++|+..+ .........+ .....+.+.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~i~~~d~~~---------~~~~~~~~~~-~~~~~~~~~~~~----------------------- 216 (388)
T d1erja_ 170 DYFPSGDKLVSGSGDRTVRIWDLRT---------GQCSLTLSIE-DGVTTVAVSPGD----------------------- 216 (388)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTT---------TEEEEEEECS-SCEEEEEECSTT-----------------------
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCC---------CCCCCCCCCC-CCCCCCCCCCCC-----------------------
T ss_conf 1111111111222101565410111---------1110000124-544211236887-----------------------
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 67880899927980999926888888532221111245799999999999999940006999972299994799899999
Q 000454 479 FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA 558 (1491)
Q Consensus 479 ~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSg 558 (1491)
+..|++++.||.|++|+..+........ ........|...|.+++|+|++.+|+++
T Consensus 217 --~~~l~~~~~d~~i~i~~~~~~~~~~~~~----------------------~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 272 (388)
T d1erja_ 217 --GKYIAAGSLDRAVRVWDSETGFLVERLD----------------------SENESGTGHKDSVYSVVFTRDGQSVVSG 272 (388)
T ss_dssp --CCEEEEEETTSCEEEEETTTCCEEEEEC----------------------------CCCSSCEEEEEECTTSSEEEEE
T ss_pred --CCEEEEECCCCEEEEEECCCCCCCEEEC----------------------CCCCCCCCCCCCEEEEEECCCCCEEEEE
T ss_conf --8758997389819996345573000102----------------------4433345778987899997999999999
Q ss_pred ECCCEEEEEECCCCC------------EEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCC
Q ss_conf 546639999889994------------58998079988499999139994999995899199996899922899860786
Q 000454 559 IMDCRICVWNAADGS------------LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF 626 (1491)
Q Consensus 559 s~DG~I~IWDl~tgk------------li~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~ 626 (1491)
+.|+.|++||+.++. +......|...|++++|+| ++.+|++++.||.|++||+.+++++..+.+|..
T Consensus 273 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~ 351 (388)
T d1erja_ 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 351 (388)
T ss_dssp ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred ECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEECCCC
T ss_conf 7899289875157764321013444200110124553278999889-999999996989799999999969999968899
Q ss_pred CEEEEEE------CCCCCEEEEEECCCCEEEEECC
Q ss_conf 4689999------4899999999589819999989
Q 000454 627 RLVDGKF------SPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 627 ~VtsIaf------SPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
.|+++++ +|++.+||+++.||.|+||++.
T Consensus 352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEE
T ss_conf 78999984674258999999999189979997621
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-42 Score=287.15 Aligned_cols=327 Identities=24% Similarity=0.404 Sum_probs=266.0
Q ss_pred CCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCE
Q ss_conf 22343058998167987899999689999999908976999987889188997068999699999579999999979981
Q 000454 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCI 308 (1491)
Q Consensus 229 ~v~t~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGt 308 (1491)
....+++.++|+||.+.|.+ +++++|++||||+.||+|+|||+.+++++.++.+|...|.+++|+++ +|++++.|+.
T Consensus 2 ~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~ 78 (342)
T d2ovrb2 2 RRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRT 78 (342)
T ss_dssp HHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSC
T ss_pred CCCCCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCEECCC
T ss_conf 89988758898886875099-99978999999918990999989999799999488999899994798--6321000001
Q ss_pred EEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 99997999986033126777559999537999507999992899199970677876542513799973248887888889
Q 000454 309 IRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1491)
Q Consensus 309 IrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~ 388 (1491)
+++|+............+...+....+.+. .++.+..|+.+.+|+..++.....+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~d~~i~~~~~~~~~~~~~~~~------------------ 135 (342)
T d2ovrb2 79 LKVWNAETGECIHTLYGHTSTVRCMHLHEK-----RVVSGSRDATLRVWDIETGQCLHVLMG------------------ 135 (342)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEETT-----EEEEEETTSEEEEEESSSCCEEEEEEC------------------
T ss_pred CCCCCCCCCCCEECCCCCCEEEEEEECCCC-----CCCCCCCCEEEEEEECCCCCCEEEEEC------------------
T ss_conf 111111100000001233304765202465-----221234440378740355630011100------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99996328999877998899930895199980899999899999840221048889810799826751222333568878
Q 000454 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1491)
Q Consensus 389 ~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~ 468 (1491)
.......+......+++++.++.|++|+... ...+..+.+|...+..+.+.+
T Consensus 136 ----~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~--------------- 187 (342)
T d2ovrb2 136 ----HVAAVRCVQYDGRRVVSGAYDFMVKVWDPET---------ETCLHTLQGHTNRVYSLQFDG--------------- 187 (342)
T ss_dssp ----CSSCEEEEEECSSCEEEEETTSCEEEEEGGG---------TEEEEEECCCSSCEEEEEECS---------------
T ss_pred ----CCCCCEEECCCCCEEEEECCCCEEEEEECCC---------CEEEEEECCCCCCCCCCCCCC---------------
T ss_conf ----1111000001333024335898699952523---------436678727544421006899---------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEE
Q ss_conf 88864555556788089992798099992688888853222111124579999999999999994000699997229999
Q 000454 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1491)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIaf 548 (1491)
..+++++.||.|++||+...+ .......|...+.++.+
T Consensus 188 -------------~~l~s~~~dg~i~~~d~~~~~-----------------------------~~~~~~~~~~~v~~~~~ 225 (342)
T d2ovrb2 188 -------------IHVVSGSLDTSIRVWDVETGN-----------------------------CIHTLTGHQSLTSGMEL 225 (342)
T ss_dssp -------------SEEEEEETTSCEEEEETTTCC-----------------------------EEEEECCCCSCEEEEEE
T ss_pred -------------CEEEEEECCCEEEEEECCCCE-----------------------------EEEEECCCCCCEEEEEC
T ss_conf -------------999999589939995255653-----------------------------65674166532057706
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEEC---CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEE--
Q ss_conf 47998999995466399998899945899807---9988499999139994999995899199996899922899860--
Q 000454 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSLTG---HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEI-- 623 (1491)
Q Consensus 549 SPDG~~LaSgs~DG~I~IWDl~tgkli~tL~g---Hs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~-- 623 (1491)
+ +++|++++.|+.|++|++...+....+.+ |...+.++.++ +.++++++.||.|++||+.++++++.+..
T Consensus 226 ~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~ 300 (342)
T d2ovrb2 226 K--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300 (342)
T ss_dssp E--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECT
T ss_pred C--CCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCC---CCEEEEECCCCEEEEEECCCCCEEEEEECCC
T ss_conf 8--9999997489889998655442211122100011010000137---9844999089989999999997989986234
Q ss_pred ---CCCCEEEEEECCCCCEEEEEECCCC----EEEEECCC
Q ss_conf ---7864689999489999999958981----99999899
Q 000454 624 ---SRFRLVDGKFSPDGASIILSDDVGQ----LYILNTGQ 656 (1491)
Q Consensus 624 ---h~~~VtsIafSPDG~~LAsgs~DG~----I~IWdl~t 656 (1491)
|...|++++|+|++.+||+|+.||. |++||+..
T Consensus 301 ~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 7898897899998799989999968999704899993899
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4e-42 Score=283.45 Aligned_cols=290 Identities=13% Similarity=0.129 Sum_probs=222.3
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCE-
Q ss_conf 7987899999689999999908976999987889188997068999699999579999999979981999979999860-
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI- 320 (1491)
Q Consensus 242 H~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i- 320 (1491)
+.+.+.+++++|+|+.||.+. ++.|.+|++.++.....+.+|...|++++|+|++++||+|+.||.|+||++.++...
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~ 94 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred CCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCC
T ss_conf 788759999969989999996-9999999999996617974788888999994899967225567367466310111100
Q ss_pred -EEECCCCCCEEEEEECCCCCCEEEEEEEEC--CCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf -331267775599995379995079999928--99199970677876542513799973248887888889999963289
Q 000454 321 -SVLRGHTAAVTAIAFSPRPGSVYQLLSSSD--DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 397 (1491)
Q Consensus 321 -~~L~gHs~~VtsIafSPdg~s~~~LiSgS~--DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~s 397 (1491)
..+..|...|.+++|+|++. +|++++. +..+++|++.+++....+ ..|...|.+
T Consensus 95 ~~~~~~~~~~v~~v~~s~d~~---~l~~~~~~~~~~~~v~~~~~~~~~~~l--------------------~~h~~~v~~ 151 (311)
T d1nr0a1 95 KTTIPVFSGPVKDISWDSESK---RIAAVGEGRERFGHVFLFDTGTSNGNL--------------------TGQARAMNS 151 (311)
T ss_dssp EEEEECSSSCEEEEEECTTSC---EEEEEECCSSCSEEEEETTTCCBCBCC--------------------CCCSSCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC--------------------CCCCCCCCC
T ss_conf 001343357543323331110---001111221111111111111111111--------------------111111111
Q ss_pred EEECCCCCE-EEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 998779988-9993089519998089999989999984022104888981079982675122233356887888864555
Q 000454 398 CAFNANGTV-FVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 476 (1491)
Q Consensus 398 IafSPDG~~-LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~ 476 (1491)
++|+|++.+ |++|+.|+.|++|++++ ......+..|...|.++.|+|++
T Consensus 152 v~~~~~~~~~l~sgs~d~~i~i~d~~~---------~~~~~~~~~~~~~i~~v~~~p~~--------------------- 201 (311)
T d1nr0a1 152 VDFKPSRPFRIISGSDDNTVAIFEGPP---------FKFKSTFGEHTKFVHSVRYNPDG--------------------- 201 (311)
T ss_dssp EEECSSSSCEEEEEETTSCEEEEETTT---------BEEEEEECCCSSCEEEEEECTTS---------------------
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCC---------------------
T ss_conf 111211101200011221111111111---------11111111111111112347642---------------------
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEE
Q ss_conf 55678808999279809999268888885322211112457999999999999999400069999722999947998999
Q 000454 477 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 556 (1491)
Q Consensus 477 ~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~La 556 (1491)
..+++++.||.+++|++......... ........+|...|++++|+|++++|+
T Consensus 202 -----~~l~~~~~d~~v~~~d~~~~~~~~~~----------------------~~~~~~~~~h~~~V~~~~~s~~~~~l~ 254 (311)
T d1nr0a1 202 -----SLFASTGGDGTIVLYNGVDGTKTGVF----------------------EDDSLKNVAHSGSVFGLTWSPDGTKIA 254 (311)
T ss_dssp -----SEEEEEETTSCEEEEETTTCCEEEEC----------------------BCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred -----CCCCCCCCCCCCCCCCCCCCCCCCCC----------------------CCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf -----21211111111100012446411222----------------------111111100246532102478899999
Q ss_pred EEECCCEEEEEECCCCCEEEEEECCCC-CEEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 995466399998899945899807998-849999913999499999589919999689
Q 000454 557 AAIMDCRICVWNAADGSLVHSLTGHTE-STYVLDVHPFNPRIAMSAGYDGKTIVWDIW 613 (1491)
Q Consensus 557 Sgs~DG~I~IWDl~tgkli~tL~gHs~-~VtsIafSPdd~~lLaSgS~DGtIrIWDl~ 613 (1491)
+|+.|+.|+|||+.++++++++..|.. ....+.+.+ .+..+++++.||.|++||.+
T Consensus 255 tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~-~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 255 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE-CSSCEEEEETTCCEEEEETT
T ss_pred EEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEE-CCCEEEEEECCCEEEEEECC
T ss_conf 9937996999999999699999799986332999995-19999999899979999588
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-42 Score=286.59 Aligned_cols=340 Identities=20% Similarity=0.291 Sum_probs=232.9
Q ss_pred EEEECCCCCCE-EEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 89981679878-99999689999999908976999987889188997068999699999579999999979981999979
Q 000454 236 IKRVRGHRNAV-YCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 236 i~tL~GH~~~V-tsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl 314 (1491)
..+|+||...| +|++| ++++||||+.||+|+|||+.+++++.++.+|.+.|.+++|+++ .+|++++.|+.|++|++
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI 81 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred CEEECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCCC
T ss_conf 58889837886999998--8999999918990999989999399999789998899998699-99999964524432111
Q ss_pred CCCCCEEEECCCC--CCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCC---CCCCCCC
Q ss_conf 9998603312677--7559999537999507999992899199970677876542513799973248887---8888899
Q 000454 315 PDGLPISVLRGHT--AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM---APSSSAG 389 (1491)
Q Consensus 315 ~tgk~i~~L~gHs--~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~---~~~~~~~ 389 (1491)
............. ..+....+.+++. .+++++.|+.|++|++....................... .......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
T d1nexb2 82 KKGCCTHVFEGHNSTVRCLDIVEYKNIK---YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 158 (355)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEEETTEE---EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC---EEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEE
T ss_conf 1111111110011111111111112322---0455438886899985677300124652000100000112340121011
Q ss_pred CCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 99963289998779988999308951999808999998999998402210488898107998267512223335688788
Q 000454 390 PQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKED 469 (1491)
Q Consensus 390 ~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~ 469 (1491)
.+... ...+.+++.+++++..|+.|++|++.+ ...+....++...+.++.|++.+
T Consensus 159 ~~~~~--v~~~~~~~~~~~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~-------------- 213 (355)
T d1nexb2 159 GHMAS--VRTVSGHGNIVVSGSYDNTLIVWDVAQ---------MKCLYILSGHTDRIYSTIYDHER-------------- 213 (355)
T ss_dssp CCSSC--EEEEEEETTEEEEEETTSCEEEEETTT---------TEEEEEECCCSSCEEEEEEETTT--------------
T ss_pred ECCCC--CCCCCCCCCEEEEECCCCEEEEEECCC---------CCCEEEEECCCCCCCCCCCCCCC--------------
T ss_conf 00222--100002563344211442044430131---------10001100012332111111210--------------
Q ss_pred CCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEEC
Q ss_conf 88645555567880899927980999926888888532221111245799999999999999940006999972299994
Q 000454 470 STPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWS 549 (1491)
Q Consensus 470 ~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafS 549 (1491)
..+++++.|+.|++|++.++. ....+..|...|.+++|+
T Consensus 214 ------------~~~~~~~~d~~i~i~d~~~~~-----------------------------~~~~~~~h~~~v~~~~~~ 252 (355)
T d1nexb2 214 ------------KRCISASMDTTIRIWDLENGE-----------------------------LMYTLQGHTALVGLLRLS 252 (355)
T ss_dssp ------------TEEEEEETTSCEEEEETTTCC-----------------------------EEEEECCCSSCCCEEEEC
T ss_pred ------------EEEECCCCCCEEEEEECCCCC-----------------------------CCCCCCCCCCCCCCCCCC
T ss_conf ------------021012456368763012211-----------------------------111111111111111232
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEE-EEEECCCCE
Q ss_conf 7998999995466399998899945899807998849999913999499999589919999689992289-986078646
Q 000454 550 LDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR-IYEISRFRL 628 (1491)
Q Consensus 550 PDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~-~l~~h~~~V 628 (1491)
+ ++|++++.||.|++||+.++.... ..|...+.++.+.+.++.+++++ .|+.|+|||+.+++++. .+..|...|
T Consensus 253 ~--~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V 327 (355)
T d1nexb2 253 D--KFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQI 327 (355)
T ss_dssp S--SEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEE
T ss_pred C--CEEEEEECCCCCCCCCCCCCCEEC--CCCCCCCEEEEEECCCCCEEEEE-ECCEEEEEECCCCCEEEEEECCCCCCE
T ss_conf 1--003332011111111111111000--12468822999984999899998-099799999999979888845899989
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 8999948999999995898199999
Q 000454 629 VDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 629 tsIafSPDG~~LAsgs~DG~I~IWd 653 (1491)
++++|+|+ .++++++.||.++||-
T Consensus 328 ~~v~~~~~-~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 328 WSVNFKGK-TLVAAVEKDGQSFLEI 351 (355)
T ss_dssp EEEEEETT-EEEEEEESSSCEEEEE
T ss_pred EEEEECCC-EEEEEEECCCCEEEEE
T ss_conf 99998399-1999998989099999
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.2e-42 Score=284.04 Aligned_cols=265 Identities=14% Similarity=0.187 Sum_probs=196.6
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE--EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf 79878999996899999999089769999878891--8899706899969999957999999997998199997999986
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY--CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLP 319 (1491)
Q Consensus 242 H~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~--~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~ 319 (1491)
+..+|+|++|+|+|++||+|+.|+.|+||++.+++ ++..+.+|.++|.+++|+|++++|++++.|+.|+||++.++..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCC
T ss_conf 99883899998999999999488989999888997899999558899888999979999999997999399986203321
Q ss_pred --EEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf --033126777559999537999507999992899199970677876542513799973248887888889999963289
Q 000454 320 --ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 397 (1491)
Q Consensus 320 --i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~s 397 (1491)
...+.+|...|++++|+|++. .|++++.|+.|++|++........... ....+...|.+
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~---~l~~~s~d~~i~i~~~~~~~~~~~~~~----------------~~~~~~~~v~~ 146 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEK---KFAVGSGSRVISICYFEQENDWWVCKH----------------IKKPIRSTVLS 146 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSS---EEEEEETTSSEEEEEEETTTTEEEEEE----------------ECTTCCSCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC---CCEEECCCCCCEEEEEECCCCCCCCCC----------------CCCCCCCCCCC
T ss_conf 10012232211000111111121---100000257630254420334331110----------------01011122211
Q ss_pred EEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99877998899930895199980899999899999840221048889810799826751222333568878888645555
Q 000454 398 CAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNS 477 (1491)
Q Consensus 398 IafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~ 477 (1491)
++|+|++.+|++|+.|+.|++|+........... . .+
T Consensus 147 v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~----------~---------~~------------------------ 183 (371)
T d1k8kc_ 147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA----------P---------TP------------------------ 183 (371)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC----------C---------BT------------------------
T ss_pred CCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCC----------C---------CC------------------------
T ss_conf 1111111110001347679998401576431001----------2---------21------------------------
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEE
Q ss_conf 56788089992798099992688888853222111124579999999999999994000699997229999479989999
Q 000454 478 WFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1491)
Q Consensus 478 ~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaS 557 (1491)
|+.. ............|...|.+++|+|++++|++
T Consensus 184 ------------------~~~~---------------------------~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s 218 (371)
T d1k8kc_ 184 ------------------WGSK---------------------------MPFGELMFESSSSCGWVHGVCFSANGSRVAW 218 (371)
T ss_dssp ------------------TBSC---------------------------CCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred ------------------CCCC---------------------------CCCEEEEEECCCCCCCEEEEEEECCCCCCCC
T ss_conf ------------------1111---------------------------1110112440476674789875123321000
Q ss_pred EECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 9546639999889994589980799884999991399949999958991999968999
Q 000454 558 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEG 615 (1491)
Q Consensus 558 gs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tG 615 (1491)
++.|+.|++||+..+..+..+.+|..+|.+++|+| ++.+++ ++.|+.+++|.....
T Consensus 219 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la-~g~d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 219 VSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVA-AGHDCFPVLFTYDSA 274 (371)
T ss_dssp EETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEE-EETTSSCEEEEEETT
T ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCCEEEEECC-CCCEEE-EECCCCEEEEEEECC
T ss_conf 01478605886410121000001466520365469-997999-981992678776089
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2e-40 Score=272.46 Aligned_cols=294 Identities=18% Similarity=0.232 Sum_probs=246.2
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCE
Q ss_conf 91889970689996999995799999999799819999799998603312677755999953799950799999289919
Q 000454 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1491)
Q Consensus 275 g~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtI 354 (1491)
.+..++|+||.+.|++|+|+|++.+||+|+.||.|+|||+.++..+..+..|...|.+++|+|++. ++++++.|+.+
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~---~l~~~~~d~~i 121 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN---YVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSS---EEEEEETTCCE
T ss_pred EEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCE---EEEEECCCCEE
T ss_conf 065279888789888999989999999997899555631021025799724653377567601211---44310133201
Q ss_pred EEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 99706778765425137999732488878888899999632899987799889993089519998089999989999984
Q 000454 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1491)
Q Consensus 355 rIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~ 434 (1491)
.+|+............ ....+.....+.... .+..++....+.....+.... ..
T Consensus 122 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~ 175 (340)
T d1tbga_ 122 SIYNLKTREGNVRVSR----------------ELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIET---------GQ 175 (340)
T ss_dssp EEEESSSSCSCCCEEE----------------EECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTT---------TE
T ss_pred ECCCCCCCCCCCCCCE----------------ECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC---------CC
T ss_conf 0133222212221110----------------013542110111111-111111112445432001232---------21
Q ss_pred EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 02210488898107998267512223335688788886455555678808999279809999268888885322211112
Q 000454 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1491)
Q Consensus 435 ~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1491)
.......+...+....+.+.. ..+++++.|+.|++||+.+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~d~~v~i~d~~~~~------------ 217 (340)
T d1tbga_ 176 QTTTFTGHTGDVMSLSLAPDT--------------------------RLFVSGACDASAKLWDVREGM------------ 217 (340)
T ss_dssp EEEEEECCSSCEEEEEECTTS--------------------------SEEEEEETTTEEEEEETTTTE------------
T ss_pred CCCCCCCCCEEEEEECCCCCC--------------------------CEEEEEECCCEEEEEECCCCC------------
T ss_conf 111123310157630012442--------------------------126876057369999999994------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--CCCCCEEEEEEEC
Q ss_conf 45799999999999999940006999972299994799899999546639999889994589980--7998849999913
Q 000454 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHP 592 (1491)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~--gHs~~VtsIafSP 592 (1491)
....+..|...|++++|+|++.+|++++.|+.|++|++.....+..+. .+...|.+++|+|
T Consensus 218 -----------------~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 280 (340)
T d1tbga_ 218 -----------------CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp -----------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS
T ss_pred -----------------EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf -----------------889995788985899997998999999699969997521221111111224457458999989
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 9994999995899199996899922899860786468999948999999995898199999
Q 000454 593 FNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 593 dd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWd 653 (1491)
++.+|++++.||.|++||+.+++++..+.+|..+|++++|+||+.+|++++.||.|+||+
T Consensus 281 -~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 281 -SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf -999999997979899999999939899848999789999908999999990699799859
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.1e-40 Score=274.27 Aligned_cols=287 Identities=14% Similarity=0.144 Sum_probs=238.2
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCC
Q ss_conf 68999699999579999999979981999979999860331267775599995379995079999928991999706778
Q 000454 283 GHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYS 362 (1491)
Q Consensus 283 gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg 362 (1491)
.+.+.+..++++|+|+.|+.+. ++.|.+|++.++.....+.+|...|++++|+|+++ +|++++.||.|++|++...
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~---~latg~~dg~i~iwd~~~~ 90 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY---YCASGDVHGNVRIWDTTQT 90 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS---EEEEEETTSEEEEEESSST
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCC---EEECCCCCCEEEEEEEECC
T ss_conf 7788759999969989999996-99999999999966179747888889999948999---6722556736746631011
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC--CCEEEEEECCCCCCCCCCCCCCEEEEEC
Q ss_conf 76542513799973248887888889999963289998779988999308--9519998089999989999984022104
Q 000454 363 QFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS--DTLARVWNACKPNTDDSDQPNHEIDVLS 440 (1491)
Q Consensus 363 ~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~--DG~IrIWDl~t~~~~~s~~~~~~i~~l~ 440 (1491)
.......+ ..|...|.+++|+|++.+|++++. +..+++|++.+ ......+.
T Consensus 91 ~~~~~~~~------------------~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~---------~~~~~~l~ 143 (311)
T d1nr0a1 91 THILKTTI------------------PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT---------GTSNGNLT 143 (311)
T ss_dssp TCCEEEEE------------------ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT---------CCBCBCCC
T ss_pred CCCCCCCC------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCC
T ss_conf 11000013------------------4335754332333111000111122111111111111---------11111111
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88898107998267512223335688788886455555678808999279809999268888885322211112457999
Q 000454 441 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520 (1491)
Q Consensus 441 gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~ 520 (1491)
+|...|.+++|+|++ ...+++|+.||.|++||+++.+
T Consensus 144 ~h~~~v~~v~~~~~~-------------------------~~~l~sgs~d~~i~i~d~~~~~------------------ 180 (311)
T d1nr0a1 144 GQARAMNSVDFKPSR-------------------------PFRIISGSDDNTVAIFEGPPFK------------------ 180 (311)
T ss_dssp CCSSCEEEEEECSSS-------------------------SCEEEEEETTSCEEEEETTTBE------------------
T ss_pred CCCCCCCCCCCCCCC-------------------------EEEECCCCCCCCCCCCCCCCCC------------------
T ss_conf 111111111112111-------------------------0120001122111111111111------------------
Q ss_pred CCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE-------CCCCCEEEEEEECC
Q ss_conf 99999999999940006999972299994799899999546639999889994589980-------79988499999139
Q 000454 521 PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT-------GHTESTYVLDVHPF 593 (1491)
Q Consensus 521 ~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~-------gHs~~VtsIafSPd 593 (1491)
.......|...|++++|+|+++++++++.|+.|++|+..++..+..+. +|.+.|++++|+|
T Consensus 181 -----------~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~- 248 (311)
T d1nr0a1 181 -----------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP- 248 (311)
T ss_dssp -----------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-
T ss_pred -----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf -----------11111111111111234764221211111111100012446411222111111100246532102478-
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEEEECCC-CEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 994999995899199996899922899860786-46899994899999999589819999989
Q 000454 594 NPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRF-RLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 594 d~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~-~VtsIafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
++.+|++++.||.|+|||+.+++++..+..+.. ....+.+.+++.+|++++.||.|.+|+..
T Consensus 249 ~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECC
T ss_conf 899999993799699999999969999979998633299999519999999899979999588
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.8e-40 Score=270.00 Aligned_cols=289 Identities=16% Similarity=0.151 Sum_probs=205.6
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE-CCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 30589981679878999996899999999089769999878891889970-68999699999579999999979981999
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNALVASASNDCIIRV 311 (1491)
Q Consensus 233 ~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~-gH~~~ItsIafSPDg~lLASGS~DGtIrI 311 (1491)
++..+++.||.++|+|++|+|+|++||+|+.||+|++||+.+++++..+. +|...|++++|+|++.++ +++.|+.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEE
T ss_pred CCCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCEEE-CCCCEEEEEE
T ss_conf 861368488887828999979999999990899299999999968899837887748998840331121-0231026887
Q ss_pred EECCCCCC---EEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 97999986---033126777559999537999507999992899199970677876542513799973248887888889
Q 000454 312 WRLPDGLP---ISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1491)
Q Consensus 312 WDl~tgk~---i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~ 388 (1491)
|++..... ......+...+.+++|++++. .++ ++.++.+.+|+..... ...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~---~~~-~~~~~~i~~~~~~~~~--~~~-------------------- 134 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGD---IAV-AACYKHIAIYSHGKLT--EVP-------------------- 134 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSS---CEE-EEESSEEEEEETTEEE--EEE--------------------
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCC-CCCCCCCCCCCCCCCC--CCC--------------------
T ss_conf 31677620111000111134432100112211---111-2222222111111111--101--------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99996328999877998899930895199980899999899999840221048889810799826751222333568878
Q 000454 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1491)
Q Consensus 389 ~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~ 468 (1491)
....+.+++|+|++.+|++|+.|+.|++|++.+.. ........|...|.+++|+|++
T Consensus 135 --~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~--------~~~~~~~~~~~~i~~~~~~~~~------------- 191 (299)
T d1nr0a2 135 --ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS--------VSEVKTIVHPAEITSVAFSNNG------------- 191 (299)
T ss_dssp --CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE--------EEEEEEEECSSCEEEEEECTTS-------------
T ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCC-------------
T ss_conf --11123322111111111111111111111111111--------1111111111111111111111-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEE
Q ss_conf 88864555556788089992798099992688888853222111124579999999999999994000699997229999
Q 000454 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1491)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIaf 548 (1491)
..+++++.|+.|++|++.+.... .....+..|...|++++|
T Consensus 192 -------------~~l~~~~~d~~i~~~~~~~~~~~--------------------------~~~~~~~~h~~~v~~l~~ 232 (299)
T d1nr0a2 192 -------------AFLVATDQSRKVIPYSVANNFEL--------------------------AHTNSWTFHTAKVACVSW 232 (299)
T ss_dssp -------------SEEEEEETTSCEEEEEGGGTTEE--------------------------SCCCCCCCCSSCEEEEEE
T ss_pred -------------CCCCCCCCCCCCCCCCCCCCCCC--------------------------CCCCCCCCCCCCCCCCCC
T ss_conf -------------11111111111111111111111--------------------------111111111111111124
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEE--EC-CCCCEEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 479989999954663999988999458998--07-99884999991399949999958991999968
Q 000454 549 SLDNRFVLAAIMDCRICVWNAADGSLVHSL--TG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 549 SPDG~~LaSgs~DG~I~IWDl~tgkli~tL--~g-Hs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
+|++.+|++|+.|+.|++||+.++.....+ .. +...+.++.|.+ +.+|++++.|+.|++||+
T Consensus 233 s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE--TTEEEEEETTSCEEEEEC
T ss_pred CCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECC--CCEEEEEECCCEEEEEEC
T ss_conf 66645138882899799998999973148983489889689999779--899999928997999944
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.7e-39 Score=265.15 Aligned_cols=291 Identities=17% Similarity=0.204 Sum_probs=229.6
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEC-CCCCCEEEEEECCCCCCEEEEEEEECCCC
Q ss_conf 91889970689996999995799999999799819999799998603312-67775599995379995079999928991
Q 000454 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGT 353 (1491)
Q Consensus 275 g~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~L~-gHs~~VtsIafSPdg~s~~~LiSgS~DGt 353 (1491)
|.+.+++.||...|++++|+|++++|++|+.||.|++||+.+++++..+. +|...|++++|+|++. +++++.|+.
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~----~~~~~~d~~ 77 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD----LFTVSWDDH 77 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC----EEEEETTTE
T ss_pred CCCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCE----EECCCCEEE
T ss_conf 8613684888878289999799999999908992999999999688998378877489988403311----210231026
Q ss_pred EEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 99970677876542513799973248887888889999963289998779988999308951999808999998999998
Q 000454 354 CRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN 433 (1491)
Q Consensus 354 IrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~ 433 (1491)
+++|+.......... .....+...+.+++|++++.++++++ ++.+.+|+..
T Consensus 78 v~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~----------- 128 (299)
T d1nr0a2 78 LKVVPAGGSGVDSSK-----------------AVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG----------- 128 (299)
T ss_dssp EEEECSSSSSSCTTS-----------------CCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT-----------
T ss_pred EEEECCCCCCCCCCC-----------------CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC-----------
T ss_conf 887316776201110-----------------00111134432100112211111222-2222111111-----------
Q ss_pred CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 40221048889810799826751222333568878888645555567880899927980999926888888532221111
Q 000454 434 HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQA 513 (1491)
Q Consensus 434 ~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~ 513 (1491)
...... ....+.+++|+|++ ..+++++.||.+.+||+.+...
T Consensus 129 ~~~~~~--~~~~~~~~~~s~~~--------------------------~~l~~g~~dg~i~~~d~~~~~~---------- 170 (299)
T d1nr0a2 129 KLTEVP--ISYNSSCVALSNDK--------------------------QFVAVGGQDSKVHVYKLSGASV---------- 170 (299)
T ss_dssp EEEEEE--CSSCEEEEEECTTS--------------------------CEEEEEETTSEEEEEEEETTEE----------
T ss_pred CCCCCC--CCCCCCCCCCCCCC--------------------------CCCCCCCCCCCCCCCCCCCCCC----------
T ss_conf 111101--11123322111111--------------------------1111111111111111111111----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCEEEEEE
Q ss_conf 245799999999999999940006999972299994799899999546639999889994589---98079988499999
Q 000454 514 YHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH---SLTGHTESTYVLDV 590 (1491)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~---tL~gHs~~VtsIaf 590 (1491)
.......|...|++++|+|++.+|++++.|+.|++|++.++..+. .+.+|...|++++|
T Consensus 171 ------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 232 (299)
T d1nr0a2 171 ------------------SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW 232 (299)
T ss_dssp ------------------EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred ------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ------------------11111111111111111111111111111111111111111111111111111111111124
Q ss_pred ECCCCCEEEEEECCCCEEEEECCCCCEEEEE--EECCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 1399949999958991999968999228998--6078646899994899999999589819999989
Q 000454 591 HPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY--EISRFRLVDGKFSPDGASIILSDDVGQLYILNTG 655 (1491)
Q Consensus 591 SPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l--~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl~ 655 (1491)
+| ++.+|++++.||.|++||+.++.....+ ..+...+....+++++.+|++++.||.|++|++.
T Consensus 233 s~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 233 SP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred CC-CCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCEEEEEECC
T ss_conf 66-6451388828997999989999731489834898896899997798999999289979999444
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.4e-38 Score=256.77 Aligned_cols=298 Identities=23% Similarity=0.289 Sum_probs=228.8
Q ss_pred EEEEEECCCCCE-EEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEE
Q ss_conf 889970689996-9999957999999997998199997999986033126777559999537999507999992899199
Q 000454 277 CLASCRGHEGDI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 277 ~l~tL~gH~~~I-tsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIr 355 (1491)
...+|+||...| +|++| ++++||+|+.||.|+|||+.+++++..+.+|.+.|++++|+|++ +|++++.|+.|+
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~----~l~s~s~D~~i~ 77 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG----ILVSGSTDRTVR 77 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT----EEEEEETTCCEE
T ss_pred CCEEECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCC----EEEEEECCCCCC
T ss_conf 758889837886999998--89999999189909999899993999997899988999986999----999996452443
Q ss_pred EECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCC--
Q ss_conf 970677876542513799973248887888889999963289998779988999308951999808999998999998--
Q 000454 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPN-- 433 (1491)
Q Consensus 356 IWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~-- 433 (1491)
+|++........... .........+.+.+++.++++++.|+.|++|++............
T Consensus 78 iw~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 139 (355)
T d1nexb2 78 VWDIKKGCCTHVFEG------------------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 139 (355)
T ss_dssp EEETTTTEEEEEECC------------------CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------C
T ss_pred CCCCCCCCCCCCCCC------------------CCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCE
T ss_conf 211111111111100------------------11111111111112322045543888689998567730012465200
Q ss_pred ------------CEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCC
Q ss_conf ------------40221048889810799826751222333568878888645555567880899927980999926888
Q 000454 434 ------------HEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSR 501 (1491)
Q Consensus 434 ------------~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~ 501 (1491)
........|...+.... ..+..++++..|+.+++||+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------------~~~~~~~~~~~d~~i~~~d~~~~ 191 (355)
T d1nexb2 140 YPLVFHTPEENPYFVGVLRGHMASVRTVS----------------------------GHGNIVVSGSYDNTLIVWDVAQM 191 (355)
T ss_dssp CCEEESCTTTCTTEEEEEECCSSCEEEEE----------------------------EETTEEEEEETTSCEEEEETTTT
T ss_pred ECCCEECCCCCCCEEEEEEECCCCCCCCC----------------------------CCCCEEEEECCCCEEEEEECCCC
T ss_conf 01000001123401210110022210000----------------------------25633442114420444301311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC
Q ss_conf 88853222111124579999999999999994000699997229999479989999954663999988999458998079
Q 000454 502 RSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGH 581 (1491)
Q Consensus 502 k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gH 581 (1491)
+ .......+...+.++.|++++.++++++.|+.|++|+..++.++..+.+|
T Consensus 192 ~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h 242 (355)
T d1nexb2 192 K-----------------------------CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 242 (355)
T ss_dssp E-----------------------------EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred C-----------------------------CEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 0-----------------------------00110001233211111121002101245636876301221111111111
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEE-EECCCCCEEEEEECCCCEEEEECCCCCCC
Q ss_conf 98849999913999499999589919999689992289986078646899-99489999999958981999998998312
Q 000454 582 TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDG-KFSPDGASIILSDDVGQLYILNTGQGESQ 660 (1491)
Q Consensus 582 s~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~VtsI-afSPDG~~LAsgs~DG~I~IWdl~tGk~~ 660 (1491)
...|.+++|++ .++++++.||.|++||+.++...... |...+..+ .|++++.+|++++ ||.|+||++.+|+.+
T Consensus 243 ~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~ 316 (355)
T d1nexb2 243 TALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 316 (355)
T ss_dssp SSCCCEEEECS---SEEEEECTTSEEEEEETTTCCEEEEE--ECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBC
T ss_pred CCCCCCCCCCC---CEEEEEECCCCCCCCCCCCCCEECCC--CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEE
T ss_conf 11111112321---00333201111111111111100012--4688229999849998999980-997999999999798
Q ss_pred C
Q ss_conf 4
Q 000454 661 K 661 (1491)
Q Consensus 661 ~ 661 (1491)
.
T Consensus 317 ~ 317 (355)
T d1nexb2 317 H 317 (355)
T ss_dssp C
T ss_pred E
T ss_conf 8
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.6e-39 Score=265.25 Aligned_cols=316 Identities=19% Similarity=0.286 Sum_probs=231.4
Q ss_pred EEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 99878891889970689996999995799999999799819999799998603312677755999953799950799999
Q 000454 269 IWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS 348 (1491)
Q Consensus 269 IWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSg 348 (1491)
.|... .....+|+||.+.|++|+|+|++++||+|+.||.|+|||+.+++++..+.+|...|.+++|+|++. +++++
T Consensus 2 ~w~p~-~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~---~~~~~ 77 (317)
T d1vyhc1 2 EWIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK---LLASC 77 (317)
T ss_dssp CCCCC-SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS---EEEEE
T ss_pred CCCCC-CCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCC---CCCCC
T ss_conf 36898-984489858888768999938989999993899299998999979999957888677776301111---01111
Q ss_pred ECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 28991999706778765425137999732488878888899999632899987799889993089519998089999989
Q 000454 349 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDD 428 (1491)
Q Consensus 349 S~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~ 428 (1491)
..++.+.+|+.........+ ..+...+.++.|++++..+++++.|+.+++|++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----- 132 (317)
T d1vyhc1 78 SADMTIKLWDFQGFECIRTM--------------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT----- 132 (317)
T ss_dssp ETTSCCCEEETTSSCEEECC--------------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-----
T ss_pred CCCCCCCCCCCCCCCCCCCC--------------------CCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCC-----
T ss_conf 11111011100111111110--------------------00000000000169985577652675235751144-----
Q ss_pred CCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 99998402210488898107998267512223335688788886455555678808999279809999268888885322
Q 000454 429 SDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAA 508 (1491)
Q Consensus 429 s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~ 508 (1491)
...+..+.+|...+.++.|++++ ..|++++.|+.+++|++....
T Consensus 133 ----~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~l~~~~~d~~v~~~~~~~~~------ 176 (317)
T d1vyhc1 133 ----GYCVKTFTGHREWVRMVRPNQDG--------------------------TLIASCSNDQTVRVWVVATKE------ 176 (317)
T ss_dssp ----CCEEEEEECCSSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEETTTCC------
T ss_pred ----CEEEEEECCCCCCCEEEECCCCC--------------------------CEEEEEECCCEEEEEEECCCE------
T ss_conf ----30346871677763000016679--------------------------999999279829997512540------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf 21111245799999999999999940006999972299994799899999546639999889994589980799884999
Q 000454 509 RWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVL 588 (1491)
Q Consensus 509 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsI 588 (1491)
....+..+...+.++.|+|++..+...... ... ..
T Consensus 177 -----------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------------~~~-~~ 211 (317)
T d1vyhc1 177 -----------------------CKAELREHRHVVECISWAPESSYSSISEAT---------------------GSE-TK 211 (317)
T ss_dssp -----------------------EEEEECCCSSCEEEEEECCSCGGGGGGGCC---------------------SCC---
T ss_pred -----------------------EEEEEECCCCCCEEEEEEECCCCCEEECCC---------------------CCE-EE
T ss_conf -----------------------347882477873379986325641110345---------------------630-34
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEE
Q ss_conf 99139994999995899199996899922899860786468999948999999995898199999899831246510035
Q 000454 589 DVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQF 668 (1491)
Q Consensus 589 afSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl~tGk~~~~~~~~~~ 668 (1491)
.+.. .+.++++++.|+.|++|++.+++++..+..|...|.+++|+|++++|++++.||.|++|++.+++.+....
T Consensus 212 ~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---- 286 (317)
T d1vyhc1 212 KSGK-PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN---- 286 (317)
T ss_dssp ------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE----
T ss_pred EECC-CCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC----
T ss_conf 3025-88614751699789998889996889996889987999987999999999798949999999991999992----
Q ss_pred ECCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCEEEEEECCCCCCC
Q ss_conf 60898626981699779711323574223798565566778999410011100154001899589982999518888980
Q 000454 669 FLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQG 748 (1491)
Q Consensus 669 fs~D~r~Li~d~~g~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~S~D~~ 748 (1491)
.+...+..++|+|++.+|+++ +.|+.
T Consensus 287 ---------------------------------------------------~h~~~V~~~~~s~~~~~l~s~---s~Dg~ 312 (317)
T d1vyhc1 287 ---------------------------------------------------AHEHFVTSLDFHKTAPYVVTG---SVDQT 312 (317)
T ss_dssp ---------------------------------------------------CCSSCEEEEEECSSSSCEEEE---ETTSE
T ss_pred ---------------------------------------------------CCCCCEEEEEECCCCCEEEEE---ECCCE
T ss_conf ---------------------------------------------------899988999994999999999---28994
Q ss_pred EEECC
Q ss_conf 89312
Q 000454 749 YQLQP 753 (1491)
Q Consensus 749 v~lwp 753 (1491)
+.+|+
T Consensus 313 i~iWd 317 (317)
T d1vyhc1 313 VKVWE 317 (317)
T ss_dssp EEEEC
T ss_pred EEEEC
T ss_conf 99829
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3e-39 Score=264.86 Aligned_cols=355 Identities=11% Similarity=0.100 Sum_probs=239.6
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC--CEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCC
Q ss_conf 89996999995799999999799819999799998--6033126777559999537999507999992899199970677
Q 000454 284 HEGDITDLAVSSNNALVASASNDCIIRVWRLPDGL--PISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1491)
Q Consensus 284 H~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk--~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~t 361 (1491)
...+|+|++|+|++++||+++.|+.|+||++.+++ .+..+.+|.+.|.+++|+|+++ +|++++.|++|++|++.+
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~---~l~s~s~D~~i~vWd~~~ 82 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN---RIVTCGTDRNAYVWTLKG 82 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT---EEEEEETTSCEEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCC---EEEEEECCCEEEEEEECC
T ss_conf 99883899998999999999488989999888997899999558899888999979999---999997999399986203
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECC
Q ss_conf 87654251379997324888788888999996328999877998899930895199980899999899999840221048
Q 000454 362 SQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSG 441 (1491)
Q Consensus 362 g~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~g 441 (1491)
+.....+.. ..+...|.+++|+|+++.|++++.++.|++|++..... ..........
T Consensus 83 ~~~~~~~~~------------------~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~-----~~~~~~~~~~ 139 (371)
T d1k8kc_ 83 RTWKPTLVI------------------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-----WWVCKHIKKP 139 (371)
T ss_dssp TEEEEEEEC------------------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-----EEEEEEECTT
T ss_pred CCCCCCCCC------------------CCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCC-----CCCCCCCCCC
T ss_conf 321100122------------------32211000111111121100000257630254420334-----3311100101
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88981079982675122233356887888864555556788089992798099992688888853222111124579999
Q 000454 442 HENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPP 521 (1491)
Q Consensus 442 H~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~ 521 (1491)
|...|.+++|+|++ .+|++++.||.+++|+.........
T Consensus 140 ~~~~v~~v~~~p~~--------------------------~~l~s~s~D~~v~v~~~~~~~~~~~--------------- 178 (371)
T d1k8kc_ 140 IRSTVLSLDWHPNS--------------------------VLLAAGSCDFKCRIFSAYIKEVEER--------------- 178 (371)
T ss_dssp CCSCEEEEEECTTS--------------------------SEEEEEETTSCEEEEECCCTTTSCC---------------
T ss_pred CCCCCCCCCCCCCC--------------------------CCEECCCCCCEEEEEEECCCCCCCC---------------
T ss_conf 11222111111111--------------------------1100013476799984015764310---------------
Q ss_pred CCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEE
Q ss_conf 99999999999400069999722999947998999995466399998899945899807998849999913999499999
Q 000454 522 PMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSA 601 (1491)
Q Consensus 522 ~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSg 601 (1491)
... .+.+ .....+.++....+|...|.+++|+| ++.+++++
T Consensus 179 ---------------~~~---------~~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~ 219 (371)
T d1k8kc_ 179 ---------------PAP---------TPWG--------------SKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWV 219 (371)
T ss_dssp ---------------CCC---------BTTB--------------SCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEE
T ss_pred ---------------CCC---------CCCC--------------CCCCCEEEEEECCCCCCCEEEEEEEC-CCCCCCCC
T ss_conf ---------------012---------2111--------------11111011244047667478987512-33210000
Q ss_pred ECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEC--CCCCCCCCCCCEEEECCCCCCEEEC
Q ss_conf 58991999968999228998607864689999489999999958981999998--9983124651003560898626981
Q 000454 602 GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT--GQGESQKDAKYDQFFLGDYRPLVQD 679 (1491)
Q Consensus 602 S~DGtIrIWDl~tGk~i~~l~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl--~tGk~~~~~~~~~~fs~D~r~Li~d 679 (1491)
+.|+.|++||+..+..+..+..|..+|.+++|+||+++|++|. |+.+.+|.. ..+........... .. ..
T Consensus 220 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~ 291 (371)
T d1k8kc_ 220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVP------KQ-SS 291 (371)
T ss_dssp ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC-----------
T ss_pred CCCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEEEC-CCCEEEEEEECCCCEEEEEEEECCC------CC-CC
T ss_conf 1478605886410121000001466520365469997999981-9926787760898628872020676------54-21
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCC----CEEEEEECCCCCCCEEECCCC
Q ss_conf 6997797113235742237985655667789994100111001540018995899----829995188889808931278
Q 000454 680 TYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSS----LKLAVGPDFSLDQGYQLQPLA 755 (1491)
Q Consensus 680 ~~g~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG----~~LAvg~d~S~D~~v~lwp~~ 755 (1491)
..+.. ..... ..+.... .. .... .....+...+.-.+..+++.|.+ ..++++ +.|+.+.+|++.
T Consensus 292 ~~~~~---~~~~~-~~~~~~~-~~--~~~~--~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~---g~Dg~v~iW~~~ 359 (371)
T d1k8kc_ 292 QRGLT---ARERF-QNLDKKA-SS--EGSA--AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT---GMDGGMSIWDVR 359 (371)
T ss_dssp ----C---HHHHH-HHCCCCC--------------CCCSSSSSSCEEEEEEEESTTTSCSEEEEE---ETTSEEEEEEHH
T ss_pred CCCCC---CEEEE-ECCCCEE-EE--ECCC--CCCCEECCCCCCCEEEEEEECCCCCCEEEEEEE---CCCCEEEEEECC
T ss_conf 24622---00168-5065205-87--1245--566141255569889999948998656799999---189939999698
Q ss_pred CCCCCCCCC
Q ss_conf 866223588
Q 000454 756 DLDVMIDPL 764 (1491)
Q Consensus 756 ~~~~li~pl 764 (1491)
+.+..++.+
T Consensus 360 ~~~~~~~~l 368 (371)
T d1k8kc_ 360 SLESALKDL 368 (371)
T ss_dssp HHHHHCTTC
T ss_pred CCHHHHCCE
T ss_conf 684653587
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-37 Score=252.47 Aligned_cols=335 Identities=22% Similarity=0.343 Sum_probs=250.9
Q ss_pred EECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEE
Q ss_conf 98788918899706899969999957999999997998199997999986033126777559999537999507999992
Q 000454 270 WSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS 349 (1491)
Q Consensus 270 WDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS 349 (1491)
|+..+.++.++|+||.+.|.+ +++++|++||+|+.||.|+|||+.+++++..+.+|.+.|.+++|+|+ +|++++
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~-----~l~s~s 74 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-----IIISGS 74 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT-----EEEEEE
T ss_pred CCCCCCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-----CCCCCE
T ss_conf 989988758898886875099-99978999999918990999989999799999488999899994798-----632100
Q ss_pred CCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCC
Q ss_conf 89919997067787654251379997324888788888999996328999877998899930895199980899999899
Q 000454 350 DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDS 429 (1491)
Q Consensus 350 ~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s 429 (1491)
.|+.+++|+............ ....+....+ ....++.+..|+.+.+|+..++
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~----- 127 (342)
T d2ovrb2 75 TDRTLKVWNAETGECIHTLYG--------------------HTSTVRCMHL--HEKRVVSGSRDATLRVWDIETG----- 127 (342)
T ss_dssp TTSCEEEEETTTTEEEEEECC--------------------CSSCEEEEEE--ETTEEEEEETTSEEEEEESSSC-----
T ss_pred ECCCCCCCCCCCCCCEECCCC--------------------CCEEEEEEEC--CCCCCCCCCCCEEEEEEECCCC-----
T ss_conf 000111111110000000123--------------------3304765202--4652212344403787403556-----
Q ss_pred CCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf 99984022104888981079982675122233356887888864555556788089992798099992688888853222
Q 000454 430 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509 (1491)
Q Consensus 430 ~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~ 509 (1491)
.....+............. ...+++++.|+.+++|++....
T Consensus 128 ----~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~d~~i~~~d~~~~~------- 168 (342)
T d2ovrb2 128 ----QCLHVLMGHVAAVRCVQYD----------------------------GRRVVSGAYDFMVKVWDPETET------- 168 (342)
T ss_dssp ----CEEEEEECCSSCEEEEEEC----------------------------SSCEEEEETTSCEEEEEGGGTE-------
T ss_pred ----CCEEEEECCCCCCEEECCC----------------------------CCEEEEECCCCEEEEEECCCCE-------
T ss_conf ----3001110011110000013----------------------------3302433589869995252343-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 11112457999999999999999400069999722999947998999995466399998899945899807998849999
Q 000454 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLD 589 (1491)
Q Consensus 510 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIa 589 (1491)
....+..|...+ ..+++++.++++++.|+.|++||+..++++..+.+|...+.++.
T Consensus 169 ----------------------~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~ 224 (342)
T d2ovrb2 169 ----------------------CLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224 (342)
T ss_dssp ----------------------EEEEECCCSSCE--EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred ----------------------EEEEECCCCCCC--CCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEE
T ss_conf ----------------------667872754442--10068999999995899399952556536567416653205770
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECC---CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCE
Q ss_conf 913999499999589919999689992289986078---64689999489999999958981999998998312465100
Q 000454 590 VHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISR---FRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYD 666 (1491)
Q Consensus 590 fSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~---~~VtsIafSPDG~~LAsgs~DG~I~IWdl~tGk~~~~~~~~ 666 (1491)
+++ .++++++.|+.|++|++...+....+..+. ..+.++.| ++.++++++.||.|++|++.+|+.+......
T Consensus 225 ~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~ 299 (342)
T d2ovrb2 225 LKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 299 (342)
T ss_dssp EET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEEC
T ss_pred CCC---CEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCC--CCCEEEEECCCCEEEEEECCCCCEEEEEECC
T ss_conf 689---99999748988999865544221112210001101000013--7984499908998999999999798998623
Q ss_pred EEECCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCEEEEEE-CCCC
Q ss_conf 356089862698169977971132357422379856556677899941001110015400189958998299951-8888
Q 000454 667 QFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGP-DFSL 745 (1491)
Q Consensus 667 ~~fs~D~r~Li~d~~g~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~-d~S~ 745 (1491)
. . .++...+..++|+|++..||+|. +.+.
T Consensus 300 ------------------------------~--~------------------~~~~~~v~~v~~s~~~~~la~g~~dGt~ 329 (342)
T d2ovrb2 300 ------------------------------E--S------------------GGSGGVVWRIRASNTKLVCAVGSRNGTE 329 (342)
T ss_dssp ------------------------------T--T------------------GGGTCEEEEEEECSSEEEEEEECSSSSS
T ss_pred ------------------------------C--C------------------CCCCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf ------------------------------4--7------------------8988978999987999899999689997
Q ss_pred CCCEEECCCC
Q ss_conf 9808931278
Q 000454 746 DQGYQLQPLA 755 (1491)
Q Consensus 746 D~~v~lwp~~ 755 (1491)
+..+++|+..
T Consensus 330 ~~~l~~~Df~ 339 (342)
T d2ovrb2 330 ETKLLVLDFD 339 (342)
T ss_dssp CCEEEEEECC
T ss_pred EEEEEEEECC
T ss_conf 0489999389
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6e-36 Score=243.52 Aligned_cols=284 Identities=13% Similarity=0.153 Sum_probs=154.4
Q ss_pred CEEEEEECCCCCEEEEEECCC-EEEEEECCCC--EEEEEEECCC-CCEEEEEECC--CCCEEEEEECCCEEEEEECCCCC
Q ss_conf 789999968999999990897-6999987889--1889970689-9969999957--99999999799819999799998
Q 000454 245 AVYCAIFDRSGRYVITGSDDR-LVKIWSMETA--YCLASCRGHE-GDITDLAVSS--NNALVASASNDCIIRVWRLPDGL 318 (1491)
Q Consensus 245 ~VtsIaFSpDGk~LATGS~DG-tIkIWDl~Tg--~~l~tL~gH~-~~ItsIafSP--Dg~lLASGS~DGtIrIWDl~tgk 318 (1491)
.+++++|+|+|+.||.++.+. .|+.|+.... .....+.+|. ..|++++|+| ++.+||+|+.||+|+||++..+.
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCC
T ss_conf 84799998997999999699879999768888765028990789998899998117999799999489977985405886
Q ss_pred CEEE--------ECCCCCCEEEEEECCCCCCEEEEEEEE--CCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 6033--------126777559999537999507999992--899199970677876542513799973248887888889
Q 000454 319 PISV--------LRGHTAAVTAIAFSPRPGSVYQLLSSS--DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1491)
Q Consensus 319 ~i~~--------L~gHs~~VtsIafSPdg~s~~~LiSgS--~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~ 388 (1491)
.... +..|.+.|.+++|++++. +|++++ .++.+.+|++.++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~---~l~~~~~~~~~~~~~~~~~~~~------------------------- 150 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGR---RLCVVGEGRDNFGVFISWDSGN------------------------- 150 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSS---EEEEEECCSSCSEEEEETTTCC-------------------------
T ss_pred CEEEEECCCCCCCCCCCCCEEEEEECCCCC---CCCEEECCCCCEEEEEEECCCC-------------------------
T ss_conf 215651002541136567377999899988---2201001244047888502331-------------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99996328999877998899930895199980899999899999840221048889810799826751222333568878
Q 000454 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1491)
Q Consensus 389 ~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~ 468 (1491)
.+..+.+|...|.++.|+|++
T Consensus 151 ----------------------------------------------~~~~~~~h~~~v~~~~~~~~~------------- 171 (325)
T d1pgua1 151 ----------------------------------------------SLGEVSGHSQRINACHLKQSR------------- 171 (325)
T ss_dssp ----------------------------------------------EEEECCSCSSCEEEEEECSSS-------------
T ss_pred ----------------------------------------------CCEEEEECCCCCCCCCCCCCC-------------
T ss_conf ----------------------------------------------100120012343211112343-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEE
Q ss_conf 88864555556788089992798099992688888853222111124579999999999999994000699997229999
Q 000454 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1491)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIaf 548 (1491)
+..+++++.|+.+++|+....+... .......+...|++++|
T Consensus 172 ------------~~~~~~~~~d~~v~~~d~~~~~~~~--------------------------~~~~~~~~~~~v~~v~~ 213 (325)
T d1pgua1 172 ------------PMRSMTVGDDGSVVFYQGPPFKFSA--------------------------SDRTHHKQGSFVRDVEF 213 (325)
T ss_dssp ------------SCEEEEEETTTEEEEEETTTBEEEE--------------------------EECSSSCTTCCEEEEEE
T ss_pred ------------CCEEEEEECCCCCCCCCCCCCCCCE--------------------------ECCCCCCCCCCCEEEEE
T ss_conf ------------2068886211122111122110000--------------------------00001577775277630
Q ss_pred CCC-CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEE---CCCCCEEEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf 479-9899999546639999889994589980799884999991---399949999958991999968999228998607
Q 000454 549 SLD-NRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH---PFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS 624 (1491)
Q Consensus 549 SPD-G~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafS---Pdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h 624 (1491)
+|+ +.+|++++.|+.|++||+.+++++..+.+|...+..+.|+ | ++.+|++++.|+.|+|||+.+++++..+..+
T Consensus 214 ~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~-dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 292 (325)
T d1pgua1 214 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 292 (325)
T ss_dssp CSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEEEC
T ss_conf 345310000112332101343001222111111111111100000036-8999999958993999999999788999954
Q ss_pred CCC--EEEEEECCC-CCEEEEEECCCCEEEEEC
Q ss_conf 864--689999489-999999958981999998
Q 000454 625 RFR--LVDGKFSPD-GASIILSDDVGQLYILNT 654 (1491)
Q Consensus 625 ~~~--VtsIafSPD-G~~LAsgs~DG~I~IWdl 654 (1491)
... +..++|.+. +.+|++++.||.|++|++
T Consensus 293 ~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 293 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp TTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 874067699999889999999979999999979
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-35 Score=240.39 Aligned_cols=316 Identities=12% Similarity=0.048 Sum_probs=198.5
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEE---EEEECCCCCEEEEEECCCC-CEEEEEECCCE
Q ss_conf 3058998167987899999689999999908976999987889188---9970689996999995799-99999979981
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCL---ASCRGHEGDITDLAVSSNN-ALVASASNDCI 308 (1491)
Q Consensus 233 ~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l---~tL~gH~~~ItsIafSPDg-~lLASGS~DGt 308 (1491)
|+.++.+++|.+.|++|+|+|++++||+|+.||+|+|||+.++... ....+|..+|.+++|++++ .+|++|+.|+.
T Consensus 1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~ 80 (342)
T d1yfqa_ 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred CCEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCC
T ss_conf 97597688998978889995899999999799929999756998636898855899988999995899978998126531
Q ss_pred EEEEECCCCCCEEEECCCCCCE-EEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 9999799998603312677755-999953799950799999289919997067787654251379997324888788888
Q 000454 309 IRVWRLPDGLPISVLRGHTAAV-TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSS 387 (1491)
Q Consensus 309 IrIWDl~tgk~i~~L~gHs~~V-tsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~ 387 (1491)
|++|++...........+...+ ....+.++.. .+++++.++.+++||++..............
T Consensus 81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~------------- 144 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDD---KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS------------- 144 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEETTT---EEEEEETTSEEEEECHHHHTTBCEEEEESCS-------------
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCEEEECCCCC-------------
T ss_conf 145420443200000111111111111111111---1111012221110202344433023000243-------------
Q ss_pred CCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 99999632899987799889993089519998089999989999984022104888981079982675122233356887
Q 000454 388 AGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSK 467 (1491)
Q Consensus 388 ~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~ 467 (1491)
.........+.+.+.+..+++++.|+.|++|++..... .............+.+..+.+..
T Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------------ 205 (342)
T d1yfqa_ 145 -NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED------DNGTIEESGLKYQIRDVALLPKE------------ 205 (342)
T ss_dssp -SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT------CCCEEEECSCSSCEEEEEECSGG------------
T ss_pred -CCCCCEEEEEEEECCCCCEEEECCCCCEEEEECCCCCC------CCEEEEECCCCCCEEEEEEECCC------------
T ss_conf -00120000010001687024651798478876056763------41112102542210146763699------------
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEE
Q ss_conf 88886455555678808999279809999268888885322211112457999999999999999400069999722999
Q 000454 468 EDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV 547 (1491)
Q Consensus 468 ~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIa 547 (1491)
...+++++.||.+.+|++................. .........|...+++++
T Consensus 206 -------------~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~v~~l~ 258 (342)
T d1yfqa_ 206 -------------QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC--------------HRLNLKDTNLAYPVNSIE 258 (342)
T ss_dssp -------------GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC--------------CCCCTTCCSSCCCEEEEE
T ss_pred -------------CCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEE--------------EEECCCCCCCCCCCEEEE
T ss_conf -------------98788654899599998059864011123512565--------------553147776235431599
Q ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 94799899999546639999889994589980799884999991399949999958991999968
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 548 fSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
|+|++.+|++|+.||.|++||+.+++.+..+..+ ..+..++|+| ++.++++++.|..+++|..
T Consensus 259 ~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~-~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIAC-SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEE-CSSEEEEEEECTHHHHCSS
T ss_pred ECCCCCEEEEECCCCEEEEEECCCCCEEEEECCC-CCCEEEEEEE-CCCEEEEEECCCCEEEEEE
T ss_conf 6698447999879998999999989498870589-9987999994-7999999991992788301
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.7e-35 Score=239.31 Aligned_cols=260 Identities=16% Similarity=0.248 Sum_probs=199.9
Q ss_pred CCCEEEEEECCCC-CCEEEEEECC--CCCEEEEEECCCEEEEEECCCCEE--------EEEEECCCCCEEEEEECCCCCE
Q ss_conf 3430589981679-8789999968--999999990897699998788918--------8997068999699999579999
Q 000454 231 QKMQNIKRVRGHR-NAVYCAIFDR--SGRYVITGSDDRLVKIWSMETAYC--------LASCRGHEGDITDLAVSSNNAL 299 (1491)
Q Consensus 231 ~t~k~i~tL~GH~-~~VtsIaFSp--DGk~LATGS~DGtIkIWDl~Tg~~--------l~tL~gH~~~ItsIafSPDg~l 299 (1491)
.....+..+.||. ..|++++|+| +|.+||+|+.||+|+||++..+.. ...+..|.++|.+++|++++++
T Consensus 50 ~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 129 (325)
T d1pgua1 50 SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129 (325)
T ss_dssp CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 87650289907899988999981179997999994899779854058862156510025411365673779998999882
Q ss_pred EEEEEC--CCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCC
Q ss_conf 999979--981999979999860331267775599995379995079999928991999706778765425137999732
Q 000454 300 VASASN--DCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAV 377 (1491)
Q Consensus 300 LASGS~--DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~ 377 (1491)
|++++. ++.+.+|++.++.++..+.+|...|.+++|+|++. ..+++++.|+.|++|+....+.......
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~~~~~~~d~~v~~~d~~~~~~~~~~~~------- 200 (325)
T d1pgua1 130 LCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP--MRSMTVGDDGSVVFYQGPPFKFSASDRT------- 200 (325)
T ss_dssp EEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSS--CEEEEEETTTEEEEEETTTBEEEEEECS-------
T ss_pred CCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCC--CEEEEEECCCCCCCCCCCCCCCCEECCC-------
T ss_conf 2010012440478885023311001200123432111123432--0688862111221111221100000000-------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCC-CCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCC
Q ss_conf 48887888889999963289998779-98899930895199980899999899999840221048889810799826751
Q 000454 378 AGRNMAPSSSAGPQSHQIFCCAFNAN-GTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAV 456 (1491)
Q Consensus 378 ~g~~~~~~~~~~~h~~~V~sIafSPD-G~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~ 456 (1491)
...+...|.+++|+|+ +.+|++++.|+.|++||+.+ ...+..+.+|...+..+
T Consensus 201 ----------~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~---------~~~~~~l~~~~~~v~~~------- 254 (325)
T d1pgua1 201 ----------HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS---------GEFLKYIEDDQEPVQGG------- 254 (325)
T ss_dssp ----------SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT---------CCEEEECCBTTBCCCSC-------
T ss_pred ----------CCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECC---------CCCCCCCCCCCCCCCCC-------
T ss_conf ----------1577775277630345310000112332101343001---------22211111111111110-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 22233356887888864555556788089992798099992688888853222111124579999999999999994000
Q 000454 457 ASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRI 536 (1491)
Q Consensus 457 as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 536 (1491)
T Consensus 255 -------------------------------------------------------------------------------- 254 (325)
T d1pgua1 255 -------------------------------------------------------------------------------- 254 (325)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC--EEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 699997229999479989999954663999988999458998079988--4999991399949999958991999968
Q 000454 537 LPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES--TYVLDVHPFNPRIAMSAGYDGKTIVWDI 612 (1491)
Q Consensus 537 ~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~--VtsIafSPdd~~lLaSgS~DGtIrIWDl 612 (1491)
+.+++| ++|++|++++.|+.|+|||+.+++++..+..|... +..+++.+.+..++++++.||.|+|||+
T Consensus 255 ------~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 255 ------IFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ------EEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ------EEEEEC-CCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf ------000003-68999999958993999999999788999954874067699999889999999979999999979
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-33 Score=227.60 Aligned_cols=280 Identities=21% Similarity=0.399 Sum_probs=178.7
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 30589981679878999996899999999089769999878891889970689996999995799999999799819999
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 233 ~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIW 312 (1491)
++.++...+|...|+|++| ||++||||+.||+|+|||+.+++++.++.+|.+.|++++| ++++|++|+.|+.|++|
T Consensus 5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 80 (293)
T ss_dssp CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EEEEECCCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCCC
T ss_conf 7898432899998899987--6999999928993999999999199999267787763423--63002100111011000
Q ss_pred ECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79999860331267775599995379995079999928991999706778765425137999732488878888899999
Q 000454 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 313 Dl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~ 392 (1491)
++..+........+...... +.+... .++++..++.+.+|+............ ...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 138 (293)
T d1p22a2 81 DVNTGEMLNTLIHHCEAVLH--LRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRV-----------------LVGHR 138 (293)
T ss_dssp ESSSCCEEEEECCCCSCEEE--EECCTT---EEEEEETTSCEEEEECSSSSCCEEEEE-----------------ECCCS
T ss_pred CCCCCCCCCCCCCCCCCCCC--CCCCCC---CEEECCCCCCEEEEECCCCCCCCCCCC-----------------CCCCC
T ss_conf 00246410011111100001--111110---000013566306861344544421210-----------------00113
Q ss_pred CCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 63289998779988999308951999808999998999998402210488898107998267512223335688788886
Q 000454 393 HQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1491)
Q Consensus 393 ~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~ 472 (1491)
..+.++.+.+ ..+++++.|+.|++|++.+ ...+..+.++...+..+.+.+
T Consensus 139 ~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~---------~~~~~~~~~~~~~v~~~~~~~------------------- 188 (293)
T d1p22a2 139 AAVNVVDFDD--KYIVSASGDRTIKVWNTST---------CEFVRTLNGHKRGIACLQYRD------------------- 188 (293)
T ss_dssp SCEEEEEEET--TEEEEEETTSEEEEEETTT---------CCEEEEEECCSSCEEEEEEET-------------------
T ss_pred CCCCCCEECC--CCCCCCCCCCCEEEECCCC---------CCEEEEECCCCCCCCCCCCCC-------------------
T ss_conf 5431100000--2201106998604100788---------838899715544532216898-------------------
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCC
Q ss_conf 45555567880899927980999926888888532221111245799999999999999940006999972299994799
Q 000454 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1491)
Q Consensus 473 ~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG 552 (1491)
..+++++.||.|++||+.+.. .......+...+. .+++++
T Consensus 189 ---------~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~v~--~~~~~~ 228 (293)
T d1p22a2 189 ---------RLVVSGSSDNTIRLWDIECGA-----------------------------CLRVLEGHEELVR--CIRFDN 228 (293)
T ss_dssp ---------TEEEEEETTSCEEEEETTTCC-----------------------------EEEEECCCSSCEE--EEECCS
T ss_pred ---------CEEEEECCCCEEEEEECCCCE-----------------------------EEEEECCCCEEEE--ECCCCC
T ss_conf ---------758876589989998665561-----------------------------4665214310000--014541
Q ss_pred CEEEEEECCCEEEEEECCC---------CCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 8999995466399998899---------9458998079988499999139994999995899199996
Q 000454 553 RFVLAAIMDCRICVWNAAD---------GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 553 ~~LaSgs~DG~I~IWDl~t---------gkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
.+|++++.||.|++||+.. ..++..+.+|.+.|++++|++ .+|+|++.||+|+|||
T Consensus 229 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~---~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDTILIWD 293 (293)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS---SCEEECCSSSEEEEEC
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECC---CEEEEEECCCEEEEEC
T ss_conf 0799986799799998888864445677545578458899889999719---9999992299899959
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.2e-35 Score=236.56 Aligned_cols=303 Identities=15% Similarity=0.149 Sum_probs=179.8
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCE------EEEEEECCCCCEEEEEEC------C-CCCEEE
Q ss_conf 589981679878999996899999999089769999878891------889970689996999995------7-999999
Q 000454 235 NIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAY------CLASCRGHEGDITDLAVS------S-NNALVA 301 (1491)
Q Consensus 235 ~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~------~l~tL~gH~~~ItsIafS------P-Dg~lLA 301 (1491)
.....+||.+.|+++++++ ++|+|++.|++|+||+..+.. .......|...+..+.+. . ++.+++
T Consensus 6 ~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (393)
T d1sq9a_ 6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 83 (393)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred EEECCCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEE
T ss_conf 4520876367127999969--99999979996998789878877654046765420477167666750015799876899
Q ss_pred EEECCCEEEEEECCCCCCEEEE----------CCCCCCEEEEEECCCCC--CEEEEEEEECCCCEEEECCCCCCCCCEEE
Q ss_conf 9979981999979999860331----------26777559999537999--50799999289919997067787654251
Q 000454 302 SASNDCIIRVWRLPDGLPISVL----------RGHTAAVTAIAFSPRPG--SVYQLLSSSDDGTCRIWDARYSQFSPRIY 369 (1491)
Q Consensus 302 SGS~DGtIrIWDl~tgk~i~~L----------~gHs~~VtsIafSPdg~--s~~~LiSgS~DGtIrIWDl~tg~~i~~i~ 369 (1491)
+++.||.|++|++........+ ..+...+..++|.++.. ...++++++.||.+++|++..........
T Consensus 84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~ 163 (393)
T d1sq9a_ 84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 163 (393)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEE
T ss_conf 99489919999822898205651245632431157896689998447886542179998389819998740477534102
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEE
Q ss_conf 37999732488878888899999632899987799889993089519998089999989999984022104888981079
Q 000454 370 IPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYV 449 (1491)
Q Consensus 370 ~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sI 449 (1491)
.. +.. ....+. ........+...+.++
T Consensus 164 ~~-------------------~~~--------------------~~~~~~--------------~~~~~~~~~~~~~~~v 190 (393)
T d1sq9a_ 164 TL-------------------NWS--------------------PTLELQ--------------GTVESPMTPSQFATSV 190 (393)
T ss_dssp TT-------------------CCC--------------------CEEEEE--------------EEECCSSSSCCCCCEE
T ss_pred EE-------------------EEC--------------------CCEECC--------------CCEECCCCCCCCEEEE
T ss_conf 33-------------------103--------------------200014--------------5100025789867899
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98267512223335688788886455555678808999279809999268888885322211112457999999999999
Q 000454 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1491)
Q Consensus 450 afSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~ 529 (1491)
+|+|++ .|++|+.||+|++||+.+++.....
T Consensus 191 ~~s~dg---------------------------~lasgs~Dg~i~iwd~~~~~~~~~~---------------------- 221 (393)
T d1sq9a_ 191 DISERG---------------------------LIATGFNNGTVQISELSTLRPLYNF---------------------- 221 (393)
T ss_dssp EECTTS---------------------------EEEEECTTSEEEEEETTTTEEEEEE----------------------
T ss_pred EECCCC---------------------------EEEEEECCCCEEEEEECCCCCCCCC----------------------
T ss_conf 978999---------------------------8999938982999860233211000----------------------
Q ss_pred CCCCEECCCCCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCEEEEEE-------------CCCCCEEEEEEECC
Q ss_conf 999400069999722999947998999995466---39999889994589980-------------79988499999139
Q 000454 530 GGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC---RICVWNAADGSLVHSLT-------------GHTESTYVLDVHPF 593 (1491)
Q Consensus 530 ~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG---~I~IWDl~tgkli~tL~-------------gHs~~VtsIafSPd 593 (1491)
.....+.+|...|++++|+|+|++|++|+.|+ .|++||+.+++++..+. +|.+.|++++|+|
T Consensus 222 -~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp- 299 (393)
T d1sq9a_ 222 -ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND- 299 (393)
T ss_dssp -ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-
T ss_pred -CCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCC-
T ss_conf -011111242563877004665320112428988421001035321344431156666431023202358666001389-
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEE----EEEECCCCCEEEEE
Q ss_conf 994999995899199996899922899860786468----99994899999999
Q 000454 594 NPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLV----DGKFSPDGASIILS 643 (1491)
Q Consensus 594 d~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~Vt----sIafSPDG~~LAsg 643 (1491)
++++|+|++.|++|+|||+.+++++.++.+|...|. .++|+|++..++++
T Consensus 300 d~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 300 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred CCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEC
T ss_conf 888069877999899999999979999988687613773489999999999983
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.2e-34 Score=229.73 Aligned_cols=283 Identities=10% Similarity=0.102 Sum_probs=179.1
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCE------EEECCCCCCEEEEEE---CC-CCCCEEEEEEE
Q ss_conf 997068999699999579999999979981999979999860------331267775599995---37-99950799999
Q 000454 279 ASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPI------SVLRGHTAAVTAIAF---SP-RPGSVYQLLSS 348 (1491)
Q Consensus 279 ~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i------~~L~gHs~~VtsIaf---SP-dg~s~~~LiSg 348 (1491)
...++|.+.|.++++++ ++|++++.|++|+||+..+.... .....|...+..+.+ .+ .+.....++++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ECCCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEE
T ss_conf 20876367127999969--9999997999699878987887765404676542047716766675001579987689999
Q ss_pred ECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC-----CCEEEEECCCCEEEEEECCC
Q ss_conf 2899199970677876542513799973248887888889999963289998779-----98899930895199980899
Q 000454 349 SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN-----GTVFVTGSSDTLARVWNACK 423 (1491)
Q Consensus 349 S~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPD-----G~~LasGs~DG~IrIWDl~t 423 (1491)
+.||.|++|++........+...... ......+...+..++|.++ +.++++++.|+.+++|++..
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~ 155 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLD----------LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEEC----------CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred ECCCCEEEEECCCCCCEEEEECCCCC----------EEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEC
T ss_conf 48991999982289820565124563----------24311578966899984478865421799983898199987404
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf 99989999984022104888981079982675122233356887888864555556788089992798099992688888
Q 000454 424 PNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRS 503 (1491)
Q Consensus 424 ~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~ 503 (1491)
.. ........+...... +.
T Consensus 156 ~~--------~~~~~~~~~~~~~~~----------------------------------------------~~------- 174 (393)
T d1sq9a_ 156 FA--------DESNSLTLNWSPTLE----------------------------------------------LQ------- 174 (393)
T ss_dssp SS--------SHHHHTTTCCCCEEE----------------------------------------------EE-------
T ss_pred CC--------CCCCEEEEEECCCEE----------------------------------------------CC-------
T ss_conf 77--------534102331032000----------------------------------------------14-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-----
Q ss_conf 853222111124579999999999999994000699997229999479989999954663999988999458998-----
Q 000454 504 HPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL----- 578 (1491)
Q Consensus 504 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL----- 578 (1491)
........+...+++++|+|++ +|++|+.|+.|+|||+.+++++..+
T Consensus 175 ---------------------------~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~ 226 (393)
T d1sq9a_ 175 ---------------------------GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHS 226 (393)
T ss_dssp ---------------------------EEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred ---------------------------CCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCC
T ss_conf ---------------------------5100025789867899978999-899993898299986023321100001111
Q ss_pred -ECCCCCEEEEEEECCCCCEEEEEECCCC---EEEEECCCCCEEEEEE-------------ECCCCEEEEEECCCCCEEE
Q ss_conf -0799884999991399949999958991---9999689992289986-------------0786468999948999999
Q 000454 579 -TGHTESTYVLDVHPFNPRIAMSAGYDGK---TIVWDIWEGIPIRIYE-------------ISRFRLVDGKFSPDGASII 641 (1491)
Q Consensus 579 -~gHs~~VtsIafSPdd~~lLaSgS~DGt---IrIWDl~tGk~i~~l~-------------~h~~~VtsIafSPDG~~LA 641 (1491)
.+|...|++++|+| ++++|++++.|+. |++||+.++.++..+. +|...|++++|+||+++|+
T Consensus 227 l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~ 305 (393)
T d1sq9a_ 227 MINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305 (393)
T ss_dssp --CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred CCCCCCEEEECCCCC-CCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEE
T ss_conf 124256387700466-5320112428988421001035321344431156666431023202358666001389888069
Q ss_pred EEECCCCEEEEECCCCCCCCCC
Q ss_conf 9958981999998998312465
Q 000454 642 LSDDVGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 642 sgs~DG~I~IWdl~tGk~~~~~ 663 (1491)
+++.||.|+|||+.+|+++..+
T Consensus 306 S~s~D~~v~vWd~~~g~~~~~l 327 (393)
T d1sq9a_ 306 SAGWDGKLRFWDVKTKERITTL 327 (393)
T ss_dssp EEETTSEEEEEETTTTEEEEEE
T ss_pred EECCCCEEEEEECCCCCEEEEE
T ss_conf 8779998999999999799999
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=3.6e-35 Score=238.49 Aligned_cols=335 Identities=14% Similarity=0.066 Sum_probs=238.8
Q ss_pred EEEEECC-CCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCC--EEEEEECCCCCCEEEE
Q ss_conf 9999968-999999990897699998788918899706899969999957999999997998--1999979999860331
Q 000454 247 YCAIFDR-SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDC--IIRVWRLPDGLPISVL 323 (1491)
Q Consensus 247 tsIaFSp-DGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DG--tIrIWDl~tgk~i~~L 323 (1491)
+.-.||| ||+++|+++. |.|++|++.++..... +|...|.+++|+|||++|++++.+. .|++|++.++.. ..+
T Consensus 6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~ 81 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKF 81 (360)
T ss_dssp GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EEC
T ss_pred HCCCCCCCCCCEEEEEEC-CEEEEEECCCCCEEEC--CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCE-EEE
T ss_conf 005146889999999989-9699998999948991--699988889998999999999928998999998999948-875
Q ss_pred CCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 26777559999537999507999992899199970677876542513799973248887888889999963289998779
Q 000454 324 RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNAN 403 (1491)
Q Consensus 324 ~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPD 403 (1491)
..|...|.+++|+|+++ +|++++.++.+.+|++.++.....+. .+...+.+++|+|+
T Consensus 82 ~~~~~~v~~~~~spdg~---~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~spd 138 (360)
T d1k32a3 82 EENLGNVFAMGVDRNGK---FAVVANDRFEIMTVDLETGKPTVIER--------------------SREAMITDFTISDN 138 (360)
T ss_dssp CCCCCSEEEEEECTTSS---EEEEEETTSEEEEEETTTCCEEEEEE--------------------CSSSCCCCEEECTT
T ss_pred ECCCCEEEEEEECCCCC---CCCEECCCCCCCCCCCCCCCEEEEEE--------------------CCCCCCCCHHHCCC
T ss_conf 08971277412114543---21000111110000012221000000--------------------13552023012132
Q ss_pred CCEEEEE----------CCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9889993----------089519998089999989999984022104888981079982675122233356887888864
Q 000454 404 GTVFVTG----------SSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPK 473 (1491)
Q Consensus 404 G~~LasG----------s~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~ 473 (1491)
|++|+.+ ..++.+++|++.. .....+..+...+..+.|+|++
T Consensus 139 g~~la~~~~~~~~~~~~~~~~~~~v~d~~~----------~~~~~~~~~~~~~~~~~~spdg------------------ 190 (360)
T d1k32a3 139 SRFIAYGFPLKHGETDGYVMQAIHVYDMEG----------RKIFAATTENSHDYAPAFDADS------------------ 190 (360)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTT----------TEEEECSCSSSBEEEEEECTTS------------------
T ss_pred EEEEEEECCCCCCCEEECCCCCEEEECCCC----------CCEEEECCCCCCCCCCCCCCCC------------------
T ss_conf 256652123312110002565426630455----------7135303543221100125779------------------
Q ss_pred CCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCC
Q ss_conf 55555678808999279809999268888885322211112457999999999999999400069999722999947998
Q 000454 474 FKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNR 553 (1491)
Q Consensus 474 ~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~ 553 (1491)
..|++++.++.+.+|+......... .......+..+...+..+.|++++.
T Consensus 191 --------~~l~~~s~~~~~~~~d~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~s~~~~ 240 (360)
T d1k32a3 191 --------KNLYYLSYRSLDPSPDRVVLNFSFE----------------------VVSKPFVIPLIPGSPNPTKLVPRSM 240 (360)
T ss_dssp --------CEEEEEESCCCCCEECSSSSCEECC----------------------SCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred --------CEEEEEECCCCEECCCCCCCCEEEC----------------------CCCCEEEEECCCCCCCCCEECCCCC
T ss_conf --------9999995998557533354402320----------------------3641179852469601206877767
Q ss_pred EEEEEECC-----CEEEEEECCCCCEEEEEECCCCCEEEEEEECCCC--CEEEEEECCCCEEEEECCCCCEEEEEEECCC
Q ss_conf 99999546-----6399998899945899807998849999913999--4999995899199996899922899860786
Q 000454 554 FVLAAIMD-----CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNP--RIAMSAGYDGKTIVWDIWEGIPIRIYEISRF 626 (1491)
Q Consensus 554 ~LaSgs~D-----G~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~--~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~ 626 (1491)
.++++..+ ..+..++...+.. ..+..+.+.+..+.+.+.+. .++++++.++.|++||+.+++... +..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~----~~~ 315 (360)
T d1k32a3 241 TSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE----VKN 315 (360)
T ss_dssp SCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE----EEE
T ss_pred CCCCCCEEECCCCCCEEECCCCCCCE-EEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEE----ECC
T ss_conf 15531136526654001012476752-6754138985699997359970699964899879999799974988----648
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCCEE
Q ss_conf 468999948999999995898199999899831246510035608986269
Q 000454 627 RLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLV 677 (1491)
Q Consensus 627 ~VtsIafSPDG~~LAsgs~DG~I~IWdl~tGk~~~~~~~~~~fs~D~r~Li 677 (1491)
.|.+++|||||++|++++.||.|++|++..++.. .....|++||+
T Consensus 316 ~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~------~~~~~d~~~~~ 360 (360)
T d1k32a3 316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE------RTVETDKRPLV 360 (360)
T ss_dssp EEEEEEECTTSCEEEEEETTSCEEEEESSCTTSC------EECCCCSSCEE
T ss_pred CCCEEEECCCCCEEEEEECCCEEEEEECCCCCCC------EEEEECCCCCC
T ss_conf 8687999998989999978994999999999854------59984162259
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-34 Score=235.59 Aligned_cols=272 Identities=12% Similarity=0.120 Sum_probs=164.0
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 30589981679878999996899999999089769999878891889970689996999995799999999799819999
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 233 ~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIW 312 (1491)
.+++++|+||..+|+|++|+| |+||+.||+|++|++.++ ..+|...|.+++|++++ .+++++.|++|++|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w 72 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred CCEEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCCC-EEEEEEECCCCCCC
T ss_conf 603499988798649999895----789848991999989998-----88877878999965997-28988610122211
Q ss_pred ECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79999860331267775599995379995079999928991999706778765425137999732488878888899999
Q 000454 313 RLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQS 392 (1491)
Q Consensus 313 Dl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~ 392 (1491)
++.... ....+..+.+.+++. ++..+.++.+.+|+...+.....+.. .
T Consensus 73 ~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~ 120 (287)
T d1pgua2 73 GITKHE-------FGSQPKVASANNDGF----TAVLTNDDDLLILQSFTGDIIKSVRL---------------------N 120 (287)
T ss_dssp TEEEEE-------CSSCEEEEEECSSSE----EEEEETTSEEEEEETTTCCEEEEEEC---------------------S
T ss_pred CCCCCC-------CCCCEEEEEECCCCC----EEEEEECCCCEEEECCCEEEEEECCC---------------------C
T ss_conf 111111-------122101466416785----69996033210000110035431012---------------------2
Q ss_pred CCEEEEEECCCCCEEEEECCCC-EEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 6328999877998899930895-199980899999899999840221048889810799826751222333568878888
Q 000454 393 HQIFCCAFNANGTVFVTGSSDT-LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDST 471 (1491)
Q Consensus 393 ~~V~sIafSPDG~~LasGs~DG-~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~ 471 (1491)
. .+.++++++..+++++.++ .+++|++... .........
T Consensus 121 ~--~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~--------~~~~~~~~~------------------------------ 160 (287)
T d1pgua2 121 S--PGSAVSLSQNYVAVGLEEGNTIQVFKLSDL--------EVSFDLKTP------------------------------ 160 (287)
T ss_dssp S--CEEEEEECSSEEEEEETTTSCEEEEETTEE--------EEEEECSSC------------------------------
T ss_pred C--EEEEEECCCCCEEEECCCCCEEEEEECCCC--------CEEEEEEEC------------------------------
T ss_conf 2--035652147511100022100021000122--------100012102------------------------------
Q ss_pred CCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCC
Q ss_conf 64555556788089992798099992688888853222111124579999999999999994000699997229999479
Q 000454 472 PKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLD 551 (1491)
Q Consensus 472 ~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPD 551 (1491)
+...+++++|+|+
T Consensus 161 -------------------------------------------------------------------~~~~v~~~~~s~~ 173 (287)
T d1pgua2 161 -------------------------------------------------------------------LRAKPSYISISPS 173 (287)
T ss_dssp -------------------------------------------------------------------CSSCEEEEEECTT
T ss_pred -------------------------------------------------------------------CCCCEEEEEECCC
T ss_conf -------------------------------------------------------------------4785369995167
Q ss_pred CCEEEEEECCCEEEEEECCCCCEEE-EEECCCCCEEEEEEECC---------CCCEEEEEECCCCEEEEECCC-CCEEEE
Q ss_conf 9899999546639999889994589-98079988499999139---------994999995899199996899-922899
Q 000454 552 NRFVLAAIMDCRICVWNAADGSLVH-SLTGHTESTYVLDVHPF---------NPRIAMSAGYDGKTIVWDIWE-GIPIRI 620 (1491)
Q Consensus 552 G~~LaSgs~DG~I~IWDl~tgkli~-tL~gHs~~VtsIafSPd---------d~~lLaSgS~DGtIrIWDl~t-Gk~i~~ 620 (1491)
+.+|++++.|+.|++||+.++.... .+.+|...|.+++|+|. +..++++++.|+.|+||++.. ++++..
T Consensus 174 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~ 253 (287)
T d1pgua2 174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA 253 (287)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE
T ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 65211011111100000023321100011111111000001365410012678870276649995999888999758999
Q ss_pred EEECCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 8607864689999489999999958981999998
Q 000454 621 YEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 621 l~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
+.+|...|++++|+|++ .|++++.||.|++|++
T Consensus 254 ~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 254 LNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp TTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred ECCCCCCEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf 27878985899998999-8999979992999997
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.8e-33 Score=224.78 Aligned_cols=278 Identities=23% Similarity=0.378 Sum_probs=219.7
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEE
Q ss_conf 88997068999699999579999999979981999979999860331267775599995379995079999928991999
Q 000454 277 CLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRI 356 (1491)
Q Consensus 277 ~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrI 356 (1491)
.+.....|...|+|++| ++++||+|+.||.|+|||+.+++++.++.+|.+.|++++|.+ + +|++++.|+.|++
T Consensus 7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~--~---~l~s~s~D~~i~~ 79 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--R---VIITGSSDSTVRV 79 (293)
T ss_dssp CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS--S---EEEEEETTSCEEE
T ss_pred EEECCCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEECCC--C---EEECCCCCCCCCC
T ss_conf 98432899998899987--699999992899399999999919999926778776342363--0---0210011101100
Q ss_pred ECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 70677876542513799973248887888889999963289998779988999308951999808999998999998402
Q 000454 357 WDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEI 436 (1491)
Q Consensus 357 WDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i 436 (1491)
|++..+....... ........+.+....++++..++.+.+|+..... .....
T Consensus 80 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 131 (293)
T d1p22a2 80 WDVNTGEMLNTLI----------------------HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT------DITLR 131 (293)
T ss_dssp EESSSCCEEEEEC----------------------CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSS------CCEEE
T ss_pred CCCCCCCCCCCCC----------------------CCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCC------CCCCC
T ss_conf 0002464100111----------------------1110000111111000001356630686134454------44212
Q ss_pred EEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 21048889810799826751222333568878888645555567880899927980999926888888532221111245
Q 000454 437 DVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHL 516 (1491)
Q Consensus 437 ~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l 516 (1491)
..+..|...+..+.+.+ ..+++++.|+.+++|++.+.+
T Consensus 132 ~~~~~~~~~v~~~~~~~----------------------------~~~~~~s~d~~i~~~d~~~~~-------------- 169 (293)
T d1p22a2 132 RVLVGHRAAVNVVDFDD----------------------------KYIVSASGDRTIKVWNTSTCE-------------- 169 (293)
T ss_dssp EEECCCSSCEEEEEEET----------------------------TEEEEEETTSEEEEEETTTCC--------------
T ss_pred CCCCCCCCCCCCCEECC----------------------------CCCCCCCCCCCEEEECCCCCC--------------
T ss_conf 10001135431100000----------------------------220110699860410078883--------------
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCC
Q ss_conf 79999999999999994000699997229999479989999954663999988999458998079988499999139994
Q 000454 517 KVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR 596 (1491)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~ 596 (1491)
....+..+...+..+.++ +.++++++.|+.|++||+.+...+..+.++...+..+. + +..
T Consensus 170 ---------------~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~--~-~~~ 229 (293)
T d1p22a2 170 ---------------FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR--F-DNK 229 (293)
T ss_dssp ---------------EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE--C-CSS
T ss_pred ---------------EEEEECCCCCCCCCCCCC--CCEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEECC--C-CCE
T ss_conf ---------------889971554453221689--87588765899899986655614665214310000014--5-410
Q ss_pred EEEEEECCCCEEEEECCC---------CCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 999995899199996899---------922899860786468999948999999995898199999
Q 000454 597 IAMSAGYDGKTIVWDIWE---------GIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILN 653 (1491)
Q Consensus 597 lLaSgS~DGtIrIWDl~t---------Gk~i~~l~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWd 653 (1491)
+|++++.||.|++||+.. ..++..+..|...|++++| ++.+|++++.||.|+|||
T Consensus 230 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEE--CCCEEEEEECCCEEEEEC
T ss_conf 7999867997999988888644456775455784588998899997--199999992299899959
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5e-34 Score=231.12 Aligned_cols=231 Identities=16% Similarity=0.168 Sum_probs=148.5
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCE
Q ss_conf 91889970689996999995799999999799819999799998603312677755999953799950799999289919
Q 000454 275 AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTC 354 (1491)
Q Consensus 275 g~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtI 354 (1491)
.++++++.||..+|++++|+| |++|+.||+|++|++.++ ..+|...|.+++|+++. .+++++.|++|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~----~~~s~s~D~~v 69 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ----EYSSISWDDTL 69 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT----CCEEEETTTEE
T ss_pred CCEEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCCC----EEEEEEECCCC
T ss_conf 603499988798649999895----789848991999989998-----88877878999965997----28988610122
Q ss_pred EEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 99706778765425137999732488878888899999632899987799889993089519998089999989999984
Q 000454 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1491)
Q Consensus 355 rIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~ 434 (1491)
++|++.... ....+.++++.+++..++++. ++.+.+|+...+ .
T Consensus 70 ~~w~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~ 112 (287)
T d1pgua2 70 KVNGITKHE---------------------------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTG---------D 112 (287)
T ss_dssp EETTEEEEE---------------------------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTC---------C
T ss_pred CCCCCCCCC---------------------------CCCCEEEEEECCCCCEEEEEE-CCCCEEEECCCE---------E
T ss_conf 211111111---------------------------122101466416785699960-332100001100---------3
Q ss_pred EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 02210488898107998267512223335688788886455555678808999279809999268888885322211112
Q 000454 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1491)
Q Consensus 435 ~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1491)
.+..+.
T Consensus 113 ~~~~~~-------------------------------------------------------------------------- 118 (287)
T d1pgua2 113 IIKSVR-------------------------------------------------------------------------- 118 (287)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred EEEECC--------------------------------------------------------------------------
T ss_conf 543101--------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCC-EEEEEECCCCCEEEEEE-CCCCCEEEEEEEC
Q ss_conf 457999999999999999400069999722999947998999995466-39999889994589980-7998849999913
Q 000454 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDC-RICVWNAADGSLVHSLT-GHTESTYVLDVHP 592 (1491)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG-~I~IWDl~tgkli~tL~-gHs~~VtsIafSP 592 (1491)
.. ....++++++..+++++.++ .+++|++........+. .|...+++++|+|
T Consensus 119 ------------------------~~--~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 172 (287)
T d1pgua2 119 ------------------------LN--SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP 172 (287)
T ss_dssp ------------------------CS--SCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT
T ss_pred ------------------------CC--CEEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECC
T ss_conf ------------------------22--2035652147511100022100021000122100012102478536999516
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEE-EEECCCCEEEEEECCC----------CCEEEEEECCCCEEEEECCC
Q ss_conf 9994999995899199996899922899-8607864689999489----------99999995898199999899
Q 000454 593 FNPRIAMSAGYDGKTIVWDIWEGIPIRI-YEISRFRLVDGKFSPD----------GASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 593 dd~~lLaSgS~DGtIrIWDl~tGk~i~~-l~~h~~~VtsIafSPD----------G~~LAsgs~DG~I~IWdl~t 656 (1491)
++.+|++++.||.|++||+.++..+.. +..|...|.+++|+|+ +.+|++++.|+.|+||++..
T Consensus 173 -~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~ 246 (287)
T d1pgua2 173 -SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246 (287)
T ss_dssp -TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred -CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCC
T ss_conf -76521101111110000002332110001111111100000136541001267887027664999599988899
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.6e-33 Score=223.89 Aligned_cols=299 Identities=11% Similarity=0.048 Sum_probs=216.8
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEE---CCCCCCEEEEEECCCCCCEEEEEEEECCC
Q ss_conf 188997068999699999579999999979981999979999860331---26777559999537999507999992899
Q 000454 276 YCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL---RGHTAAVTAIAFSPRPGSVYQLLSSSDDG 352 (1491)
Q Consensus 276 ~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~L---~gHs~~VtsIafSPdg~s~~~LiSgS~DG 352 (1491)
+.+....+|...|++|+|+|++++||+|+.||+|+||++..+.....+ .+|.+.|.+++|+|++. .+|++++.||
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~--~~l~sg~~d~ 79 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD--LQIYVGTVQG 79 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSS--EEEEEEETTS
T ss_pred CEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCC--CEEEECCCCC
T ss_conf 75976889989788899958999999997999299997569986368988558999889999958999--7899812653
Q ss_pred CEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCC
Q ss_conf 19997067787654251379997324888788888999996328999877998899930895199980899999899999
Q 000454 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQP 432 (1491)
Q Consensus 353 tIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~ 432 (1491)
.|++|++........... .+........+.++...+++++.++.+++|+++.....
T Consensus 80 ~v~~w~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~----- 135 (342)
T d1yfqa_ 80 EILKVDLIGSPSFQALTN-------------------NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG----- 135 (342)
T ss_dssp CEEEECSSSSSSEEECBS-------------------CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB-----
T ss_pred CEEEEECCCCCCCCCCCC-------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-----
T ss_conf 114542044320000011-------------------11111111111111111111012221110202344433-----
Q ss_pred CCEEEEECCCCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCC
Q ss_conf 840221048889--810799826751222333568878888645555567880899927980999926888888532221
Q 000454 433 NHEIDVLSGHEN--DVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARW 510 (1491)
Q Consensus 433 ~~~i~~l~gH~~--~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~ 510 (1491)
.........+.. ....+.+.+. ...+++++.||.|++|++........
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~d~~i~~~~~~~~~~~~~---- 185 (342)
T d1yfqa_ 136 VIAVKNLNSNNTKVKNKIFTMDTN--------------------------SSRLIVGMNNSQVQWFRLPLCEDDNG---- 185 (342)
T ss_dssp CEEEEESCSSSSSSCCCEEEEEEC--------------------------SSEEEEEESTTEEEEEESSCCTTCCC----
T ss_pred EEEECCCCCCCCCCEEEEEEEECC--------------------------CCCEEEECCCCCEEEEECCCCCCCCE----
T ss_conf 023000243001200000100016--------------------------87024651798478876056763411----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEE-ECCCCCEEEEEECCCEEEEEECCCCCEE------E-------
Q ss_conf 1112457999999999999999400069999722999-9479989999954663999988999458------9-------
Q 000454 511 TQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIV-WSLDNRFVLAAIMDCRICVWNAADGSLV------H------- 576 (1491)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIa-fSPDG~~LaSgs~DG~I~IWDl~tgkli------~------- 576 (1491)
..........+.+.. +..++..+++++.||.+.+|+....... .
T Consensus 186 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T d1yfqa_ 186 ----------------------TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp ----------------------EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred ----------------------EEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEEEEE
T ss_conf ----------------------1210254221014676369998788654899599998059864011123512565553
Q ss_pred --EEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf --980799884999991399949999958991999968999228998607864689999489999999958981999998
Q 000454 577 --SLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 577 --tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
...+|...|++++|+| ++.+|++|+.||.|+|||+.+++.+..+..+ ..+..++|+|+|++|++++.|+.+++|..
T Consensus 244 ~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 244 NLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred CCCCCCCCCCCEEEEECC-CCCEEEEECCCCEEEEEECCCCCEEEEECCC-CCCEEEEEEECCCEEEEEECCCCEEEEEE
T ss_conf 147776235431599669-8447999879998999999989498870589-99879999947999999991992788301
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=2.1e-31 Score=214.14 Aligned_cols=340 Identities=11% Similarity=0.032 Sum_probs=211.7
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEE-----CCCCC
Q ss_conf 9999999908976999987889188997068999699999579999999979981999979999860331-----26777
Q 000454 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVL-----RGHTA 328 (1491)
Q Consensus 254 DGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~L-----~gHs~ 328 (1491)
..-++++.+.||+|+|||+.+++++.++..+. .+..++|+|||++|++++.|+.|++||+.+++..... .+|.+
T Consensus 31 ~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~ 109 (426)
T d1hzua2 31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS 109 (426)
T ss_dssp GGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred CEEEEEEECCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCC
T ss_conf 70899997599979999999995999996899-80389998999999999589988999756886048999867888764
Q ss_pred CEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 55999953799950799999289919997067787654251379997324888788888999996328999877998899
Q 000454 329 AVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV 408 (1491)
Q Consensus 329 ~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~La 408 (1491)
.+.+++|+||++ +.++++..++.+.+||..++.+...+...... ..............+.+++++..++
T Consensus 110 ~~~s~~~spDG~--~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~i~~s~d~~~~~ 178 (426)
T d1hzua2 110 VESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT---------VDTQTYHPEPRVAAIIASHEHPEFI 178 (426)
T ss_dssp EEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEEC---------SSSCCEESCCCEEEEEECSSSSEEE
T ss_pred EEEEEEECCCCC--EEEEEECCCCEEEEECCCCCCEEEEEECCCCC---------CCCEEECCCCCEEEEEECCCCCEEE
T ss_conf 588500268898--79996358976999857764125786226777---------3643642788503899878787888
Q ss_pred EECC-CCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 9308-951999808999998999998402210488898107998267512223335688788886455555678808999
Q 000454 409 TGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC 487 (1491)
Q Consensus 409 sGs~-DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSg 487 (1491)
.... .+.+.+++.... .........+...+..+.|+|++ ...+++.
T Consensus 179 ~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g-------------------------~~~~~a~ 225 (426)
T d1hzua2 179 VNVKETGKVLLVNYKDI--------DNLTVTSIGAAPFLADGGWDSSH-------------------------RYFMTAA 225 (426)
T ss_dssp EEETTTTEEEEEECSSS--------SSCEEEEEECCSSEEEEEECTTS-------------------------CEEEEEE
T ss_pred EECCCCCEEEEEEECCC--------CCEEEEEECCCCCCEEEEECCCC-------------------------CEEEEEE
T ss_conf 85278976999992466--------52045775667753761377888-------------------------6788642
Q ss_pred ECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 27980999926888888532221111245799999999999999940006999972299994799899999546639999
Q 000454 488 SRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVW 567 (1491)
Q Consensus 488 S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IW 567 (1491)
..+..+.+|+..+.+........ . .............+...+....++ .++.+.+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~----------~d~~v~~~ 281 (426)
T d1hzua2 226 NNSNKVAVIDSKDRRLSALVDVG-------K-------TPHPGRGANFVHPKYGPVWSTSHL----------GDGSISLI 281 (426)
T ss_dssp TTCSEEEEEETTTTEEEEEEECS-------S-------CCCCSCCEEEEETTTEEEEEEECT----------TTCEEEEE
T ss_pred ECCCCEEEEECCCCCEEEEECCC-------C-------CCCCCCEEEEECCCCCCEEEECCC----------CCCEEEEE
T ss_conf 01100000002556278875058-------7-------444342011006987745774157----------89659885
Q ss_pred ECC-------CCCEEEEEECCCCCEEEEEEECCCCCEEE-------EEECCCCEEEEECCCCCEEEEEE---------EC
Q ss_conf 889-------99458998079988499999139994999-------99589919999689992289986---------07
Q 000454 568 NAA-------DGSLVHSLTGHTESTYVLDVHPFNPRIAM-------SAGYDGKTIVWDIWEGIPIRIYE---------IS 624 (1491)
Q Consensus 568 Dl~-------tgkli~tL~gHs~~VtsIafSPdd~~lLa-------SgS~DGtIrIWDl~tGk~i~~l~---------~h 624 (1491)
+.. .+++...+.+|...+..++|+| ++++++ +++.|++|+|||+.++++...+. .+
T Consensus 282 ~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~ 360 (426)
T d1hzua2 282 GTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG 360 (426)
T ss_dssp ECCTTTCTTTBTSEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred ECCCCCCCCCCCEEEEEEECCCCCEEEEECCC-CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCC
T ss_conf 22566520330258689866887636787489-98618885067988022887999989878767089502110256778
Q ss_pred CCCEEEEEECCCCCEEEEE-----ECCCCEEEEECCCCCCCCCC
Q ss_conf 8646899994899999999-----58981999998998312465
Q 000454 625 RFRLVDGKFSPDGASIILS-----DDVGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 625 ~~~VtsIafSPDG~~LAsg-----s~DG~I~IWdl~tGk~~~~~ 663 (1491)
...|..++|||||++|+++ +.+|.|.|||..+++....+
T Consensus 361 ~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i 404 (426)
T d1hzua2 361 AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV 404 (426)
T ss_dssp CCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEEE
T ss_conf 85189879999999999997248888982999999987389998
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=1.1e-31 Score=216.01 Aligned_cols=341 Identities=13% Similarity=0.022 Sum_probs=233.9
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEE--EEEEE---CCCCCEEEEEECCC
Q ss_conf 34577732234305899816798789999968999999990897699998788918--89970---68999699999579
Q 000454 222 AIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYC--LASCR---GHEGDITDLAVSSN 296 (1491)
Q Consensus 222 ~~a~~~~~v~t~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~--l~tL~---gH~~~ItsIafSPD 296 (1491)
+.....|+..+.++++++..| ..+..++|||||++|++++.|+.|.+||+.+++. ...+. +|.+.+.+.+|+||
T Consensus 41 ~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD 119 (432)
T d1qksa2 41 AGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE 119 (432)
T ss_dssp TTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT
T ss_pred CCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCCC
T ss_conf 997999989998399997379-9713799889999999982899978998108981288998448898776984321888
Q ss_pred CCEE-EEEECCCEEEEEECCCCCCEEEECCC-----------CCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCC
Q ss_conf 9999-99979981999979999860331267-----------77559999537999507999992899199970677876
Q 000454 297 NALV-ASASNDCIIRVWRLPDGLPISVLRGH-----------TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQF 364 (1491)
Q Consensus 297 g~lL-ASGS~DGtIrIWDl~tgk~i~~L~gH-----------s~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~ 364 (1491)
|++| +++..++.|++||..+++++..+..+ ......+.++|++. ..+++...++.|.+|+..+.+.
T Consensus 120 G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~--~~~vs~~~~~~i~~~d~~~~~~ 197 (432)
T d1qksa2 120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP--EFIVNVKETGKILLVDYTDLNN 197 (432)
T ss_dssp TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS--EEEEEETTTTEEEEEETTCSSE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCC--EEEEEECCCCEEEEEECCCCCC
T ss_conf 88899981789827999076554225402477643522016888505899878999--8999981688299998437875
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC-CCEEEEEECCCCCCCCCCCCCCEEEEEC---
Q ss_conf 542513799973248887888889999963289998779988999308-9519998089999989999984022104---
Q 000454 365 SPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLS--- 440 (1491)
Q Consensus 365 i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~-DG~IrIWDl~t~~~~~s~~~~~~i~~l~--- 440 (1491)
.....++ ....+..++|+|+|+++++++. +..+.+++.... .....+.
T Consensus 198 ~~~~~i~-------------------~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~---------~~~~~~~~g~ 249 (432)
T d1qksa2 198 LKTTEIS-------------------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---------KLVAIEDTGG 249 (432)
T ss_dssp EEEEEEE-------------------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---------EEEEEEECSS
T ss_pred CEEEEEC-------------------CCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCC---------EEEEEECCCC
T ss_conf 2279983-------------------36754265388988799995166636777614452---------6888721486
Q ss_pred --CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-ECCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf --88898107998267512223335688788886455555678808999-279809999268888885322211112457
Q 000454 441 --GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC-SRDGSAIIWIPRSRRSHPKAARWTQAYHLK 517 (1491)
Q Consensus 441 --gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSg-S~DGtIrIWDl~s~k~~~~~~~~~~~~~l~ 517 (1491)
.|........+...+ ....+. ..++.+.+|......
T Consensus 250 ~~~~~~~~~~~~~~~~g--------------------------~~~~~~~lg~~~v~~~~~~~~~--------------- 288 (432)
T d1qksa2 250 QTPHPGRGANFVHPTFG--------------------------PVWATSHMGDDSVALIGTDPEG--------------- 288 (432)
T ss_dssp SSBCCTTCEEEEETTTE--------------------------EEEEEEBSSSSEEEEEECCTTT---------------
T ss_pred CCCCCCCCCCEECCCCC--------------------------CEECCCCCCCCEEEECCCCCCC---------------
T ss_conf 22456766410148988--------------------------3102135688358762456655---------------
Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCE
Q ss_conf 99999999999999940006999972299994799899999546639999889994589980799884999991399949
Q 000454 518 VPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRI 597 (1491)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~l 597 (1491)
...+...+....+++++..+++++.+...++|...... .|......+++ | +++.
T Consensus 289 ------------------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-p-Dg~~ 342 (432)
T d1qksa2 289 ------------------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-F-DIKA 342 (432)
T ss_dssp ------------------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-E-EGGG
T ss_pred ------------------CCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCC------CCCCEEEEEEE-E-ECHH
T ss_conf ------------------54656577799886899768887268864102112678------88770359999-9-6246
Q ss_pred EEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCCCCCC
Q ss_conf 99995899199996899922899860786468999948999999995-----8981999998998312465
Q 000454 598 AMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSD-----DVGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 598 LaSgS~DGtIrIWDl~tGk~i~~l~~h~~~VtsIafSPDG~~LAsgs-----~DG~I~IWdl~tGk~~~~~ 663 (1491)
+++++.|+.+++|++.++..+ ..+...|..++|||||++|+++. .+|.|.|||..++++....
T Consensus 343 la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i 410 (432)
T d1qksa2 343 MTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI 410 (432)
T ss_dssp CCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred HCCCCCCCCEEECCCCCCCCC---CCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEEEEEE
T ss_conf 104556784486334344445---78998689767989999999997048888886899999995588684
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=8.2e-32 Score=216.81 Aligned_cols=314 Identities=12% Similarity=0.066 Sum_probs=216.1
Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC--CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 73223430589981679878999996899999999089--7699998788918899706899969999957999999997
Q 000454 227 STMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDD--RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS 304 (1491)
Q Consensus 227 ~~~v~t~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~D--GtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS 304 (1491)
.|.....+.++ + +|...|++++|+|||++|++++.+ ..|++|++.++... .+..|...|.+++|+|++++|++++
T Consensus 28 v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~ 104 (360)
T d1k32a3 28 IQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVAN 104 (360)
T ss_dssp EECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEE
T ss_pred EEECCCCCEEE-C-CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEE-EEECCCCEEEEEEECCCCCCCCEEC
T ss_conf 99899994899-1-6999888899989999999999289989999989999488-7508971277412114543210001
Q ss_pred CCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEE----------CCCCEEEECCCCCCCCCEEECCCCC
Q ss_conf 998199997999986033126777559999537999507999992----------8991999706778765425137999
Q 000454 305 NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS----------DDGTCRIWDARYSQFSPRIYIPRPS 374 (1491)
Q Consensus 305 ~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS----------~DGtIrIWDl~tg~~i~~i~~~~~~ 374 (1491)
.++.+++|++.++.....+..|...+.+++|+|+++ +|+.+. .++.+++|++.+++.....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~---~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~------ 175 (360)
T d1k32a3 105 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR---FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT------ 175 (360)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC---EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS------
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEE---EEEEECCCCCCCEEECCCCCEEEECCCCCCEEEEC------
T ss_conf 111100000122210000001355202301213225---66521233121100025654266304557135303------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC
Q ss_conf 73248887888889999963289998779988999308951999808999998999998402210488898107998267
Q 000454 375 DAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 375 ~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpd 454 (1491)
.+...+.+++|+|+|+.|++++.++.+.+|+........ ........+..+...+..+.|+++
T Consensus 176 ---------------~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~ 238 (360)
T d1k32a3 176 ---------------TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF--EVVSKPFVIPLIPGSPNPTKLVPR 238 (360)
T ss_dssp ---------------CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEEC--CSCBEEEEEESSTTCCCGGGCCCG
T ss_pred ---------------CCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCEEE--CCCCCEEEEECCCCCCCCCEECCC
T ss_conf ---------------543221100125779999999599855753335440232--036411798524696012068777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC---EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5122233356887888864555556788089992798---0999926888888532221111245799999999999999
Q 000454 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGG 531 (1491)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DG---tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 531 (1491)
+. .++++..+. ..++|.+.. ...
T Consensus 239 ~~--------------------------~~~~~~~~~~~~~~~~~~~~~----------------------------~~~ 264 (360)
T d1k32a3 239 SM--------------------------TSEAGEYDLNDMYKRSSPINV----------------------------DPG 264 (360)
T ss_dssp GG--------------------------SCCCCCCCCTTGGGGCEECSC----------------------------CCB
T ss_pred CC--------------------------CCCCCCEEECCCCCCEEECCC----------------------------CCC
T ss_conf 67--------------------------155311365266540010124----------------------------767
Q ss_pred CCEECCCCCCCEEEEEECCCC---CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 940006999972299994799---89999954663999988999458998079988499999139994999995899199
Q 000454 532 PRQRILPTPRGVNMIVWSLDN---RFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTI 608 (1491)
Q Consensus 532 ~~~~l~~h~~~VtsIafSPDG---~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIr 608 (1491)
....+..+...+..+.+...+ .++++++.++.|++||+.+++... |.+.|..++|+| ++++|++++.||.|+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~----~~~~v~~~~~Sp-DG~~l~~~~~Dg~i~ 339 (360)
T d1k32a3 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE----VKNNLTDLRLSA-DRKTVMVRKDDGKIY 339 (360)
T ss_dssp CEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE----EEEEEEEEEECT-TSCEEEEEETTSCEE
T ss_pred CEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEE----ECCCCCEEEECC-CCCEEEEEECCCEEE
T ss_conf 526754138985699997359970699964899879999799974988----648868799999-898999997899499
Q ss_pred EEECCCCCEEEEEEECCCCE
Q ss_conf 99689992289986078646
Q 000454 609 VWDIWEGIPIRIYEISRFRL 628 (1491)
Q Consensus 609 IWDl~tGk~i~~l~~h~~~V 628 (1491)
+||+..+....++..+..++
T Consensus 340 v~d~~~~~~~~~~~~d~~~~ 359 (360)
T d1k32a3 340 TFPLEKPEDERTVETDKRPL 359 (360)
T ss_dssp EEESSCTTSCEECCCCSSCE
T ss_pred EEECCCCCCCEEEEECCCCC
T ss_conf 99999998545998416225
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=6e-31 Score=211.22 Aligned_cols=350 Identities=9% Similarity=0.000 Sum_probs=225.4
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE--E---CCCCCEEEEEECCC
Q ss_conf 345777322343058998167987899999689999999908976999987889188997--0---68999699999579
Q 000454 222 AIAKPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASC--R---GHEGDITDLAVSSN 296 (1491)
Q Consensus 222 ~~a~~~~~v~t~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL--~---gH~~~ItsIafSPD 296 (1491)
+..+..|+..+.+.+++|.+|. .+..++|+|||++|++++.|++|++||+.+++..... . +|...+.+++|+||
T Consensus 41 dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spD 119 (426)
T d1hzua2 41 AGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYE 119 (426)
T ss_dssp TTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCT
T ss_pred CCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCC
T ss_conf 9979999999995999996899-803899989999999995899889997568860489998678887645885002688
Q ss_pred CCEEEEE-ECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCC
Q ss_conf 9999999-799819999799998603312677755999953799950799999289919997067787654251379997
Q 000454 297 NALVASA-SNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1491)
Q Consensus 297 g~lLASG-S~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~ 375 (1491)
|++|+++ ..++.+.+||..++.++..+..+...+..+.|.+++. ...+..+.|+...+|.......+..+.......
T Consensus 120 G~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~ 197 (426)
T d1hzua2 120 DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR--VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN 197 (426)
T ss_dssp TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC--EEEEEECSSSSEEEEEETTTTEEEEEECSSSSS
T ss_pred CCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCC--EEEEEECCCCCEEEEECCCCCEEEEEEECCCCC
T ss_conf 987999635897699985776412578622677736436427885--038998787878888527897699999246652
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCCEEEEEC--CCCCCCEEEEEC
Q ss_conf 324888788888999996328999877998899930-89519998089999989999984022104--888981079982
Q 000454 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVLS--GHENDVNYVQFS 452 (1491)
Q Consensus 376 ~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs-~DG~IrIWDl~t~~~~~s~~~~~~i~~l~--gH~~~V~sIafS 452 (1491)
......++...+..+.|+|++++++++. .+..+.+++.... ....... .+........+.
T Consensus 198 --------~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 260 (426)
T d1hzua2 198 --------LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR---------RLSALVDVGKTPHPGRGANFV 260 (426)
T ss_dssp --------CEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT---------EEEEEEECSSCCCCSCCEEEE
T ss_pred --------EEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCC---------CEEEEECCCCCCCCCCEEEEE
T ss_conf --------045775667753761377888678864201100000002556---------278875058744434201100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67512223335688788886455555678808999279809999268888885322211112457999999999999999
Q 000454 453 GCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGP 532 (1491)
Q Consensus 453 pdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 532 (1491)
..... .-..+..+.|+.+.+|+........ .....
T Consensus 261 ~~~~~-----------------------~~~~~~~~~d~~v~~~~~~~~~~~~----------------------~~~~~ 295 (426)
T d1hzua2 261 HPKYG-----------------------PVWSTSHLGDGSISLIGTDPKNHPQ----------------------YAWKK 295 (426)
T ss_dssp ETTTE-----------------------EEEEEECTTTCEEEEEECCTTTCTT----------------------TBTSE
T ss_pred CCCCC-----------------------CEEEECCCCCCEEEEEECCCCCCCC----------------------CCCEE
T ss_conf 69877-----------------------4577415789659885225665203----------------------30258
Q ss_pred CEECCCCCCCEEEEEECCCCCEEEE-------EECCCEEEEEECCCCCEEEEEE---------CCCCCEEEEEEECCCCC
Q ss_conf 4000699997229999479989999-------9546639999889994589980---------79988499999139994
Q 000454 533 RQRILPTPRGVNMIVWSLDNRFVLA-------AIMDCRICVWNAADGSLVHSLT---------GHTESTYVLDVHPFNPR 596 (1491)
Q Consensus 533 ~~~l~~h~~~VtsIafSPDG~~LaS-------gs~DG~I~IWDl~tgkli~tL~---------gHs~~VtsIafSPdd~~ 596 (1491)
...+.+|...+..++|+|++++|++ +..+++|+|||+.+++...++. .+...|..++|+|++.+
T Consensus 296 ~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~ 375 (426)
T d1hzua2 296 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE 375 (426)
T ss_dssp EEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSE
T ss_pred EEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEEEECCCCCE
T ss_conf 68986688763678748998618885067988022887999989878767089502110256778851898799999999
Q ss_pred EEEEE----ECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEE
Q ss_conf 99999----58991999968999228998607864689999489999999
Q 000454 597 IAMSA----GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIIL 642 (1491)
Q Consensus 597 lLaSg----S~DGtIrIWDl~tGk~i~~l~~h~~~VtsIafSPDG~~LAs 642 (1491)
+++++ +.++.|+|||..+++....+.+.. .++|+|+|.+.
T Consensus 376 i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~~ 419 (426)
T d1hzua2 376 VWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFNVY 419 (426)
T ss_dssp EEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEEHH
T ss_pred EEEEEECCCCCCCEEEEEECCCCEEEEEECCCC------CCCCCCEEEEE
T ss_conf 999972488889829999999873899987898------41999557576
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=6.5e-30 Score=204.52 Aligned_cols=362 Identities=9% Similarity=-0.021 Sum_probs=205.1
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEE-----ECCC
Q ss_conf 68999999990897699998788918899706899969999957999999997998199997999986033-----1267
Q 000454 252 DRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISV-----LRGH 326 (1491)
Q Consensus 252 SpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~-----L~gH 326 (1491)
+++.-++++.+.+|.|.|||..+++++..+..+ ..+..++|+|||++|++++.|+.|.+||+.+++.... ...|
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~ 107 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA 107 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCC
T ss_conf 878289999769997999989998399997379-9713799889999999982899978998108981288998448898
Q ss_pred CCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE
Q ss_conf 77559999537999507999992899199970677876542513799973248887888889999963289998779988
Q 000454 327 TAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTV 406 (1491)
Q Consensus 327 s~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~ 406 (1491)
.+.+.+..|+||++ ++++++..++.|++||..+++....+...... ..............+.++++|..
T Consensus 108 ~~~~~s~~~SpDG~--~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~s~dg~~ 176 (432)
T d1qksa2 108 RSIETSKMEGWEDK--YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT---------YDEQEYHPEPRVAAILASHYRPE 176 (432)
T ss_dssp EEEEECCSTTCTTT--EEEEEEEETTEEEEEETTTCCEEEEEECCEEC---------TTTCCEESCCCEEEEEECSSSSE
T ss_pred CCEEEECCCCCCCC--EEEEECCCCCEEEEEECCCCCCEEEECCCCCC---------CCCEECCCCCCEEEEEECCCCCE
T ss_conf 77698432188888--89998178982799907655422540247764---------35220168885058998789998
Q ss_pred E-EEECCCCEEEEEECCCCCCCCCCCCCCEEEEEC-CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 9-993089519998089999989999984022104-88898107998267512223335688788886455555678808
Q 000454 407 F-VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS-GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNI 484 (1491)
Q Consensus 407 L-asGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~-gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~L 484 (1491)
+ ++...++.|.+|+.... ....... .+...
T Consensus 177 ~~vs~~~~~~i~~~d~~~~---------~~~~~~~i~~g~~--------------------------------------- 208 (432)
T d1qksa2 177 FIVNVKETGKILLVDYTDL---------NNLKTTEISAERF--------------------------------------- 208 (432)
T ss_dssp EEEEETTTTEEEEEETTCS---------SEEEEEEEECCSS---------------------------------------
T ss_pred EEEEECCCCEEEEEECCCC---------CCCEEEEECCCCC---------------------------------------
T ss_conf 9999816882999984378---------7522799833675---------------------------------------
Q ss_pred EEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEEC-CCE
Q ss_conf 9992798099992688888853222111124579999999999999994000699997229999479989999954-663
Q 000454 485 VTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIM-DCR 563 (1491)
Q Consensus 485 vSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~-DG~ 563 (1491)
+..++|+|+|+++++++. +..
T Consensus 209 ----------------------------------------------------------~~~~~~spdg~~~~va~~~~~~ 230 (432)
T d1qksa2 209 ----------------------------------------------------------LHDGGLDGSHRYFITAANARNK 230 (432)
T ss_dssp ----------------------------------------------------------EEEEEECTTSCEEEEEEGGGTE
T ss_pred ----------------------------------------------------------CCCCEECCCCCEEEEECCCCCE
T ss_conf ----------------------------------------------------------4265388988799995166636
Q ss_pred EEEEECCCCCEEEEEEC-----CCCCEEEEEEECCCCCEEEEE-ECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCC
Q ss_conf 99998899945899807-----998849999913999499999-589919999689992289986078646899994899
Q 000454 564 ICVWNAADGSLVHSLTG-----HTESTYVLDVHPFNPRIAMSA-GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDG 637 (1491)
Q Consensus 564 I~IWDl~tgkli~tL~g-----Hs~~VtsIafSPdd~~lLaSg-S~DGtIrIWDl~tGk~i~~l~~h~~~VtsIafSPDG 637 (1491)
+.+++..+++.+..+.. |........+.. .+.+.++. ..++.|.+|+...... ..+...+....++|++
T Consensus 231 v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~~~~~~lg~~~v~~~~~~~~~~----~~~~~~v~~~~~~~~g 305 (432)
T d1qksa2 231 LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPVWATSHMGDDSVALIGTDPEGH----PDNAWKILDSFPALGG 305 (432)
T ss_dssp EEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEEEEEEBSSSSEEEEEECCTTTC----TTTBTSEEEEEECSCS
T ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCCCEECCC-CCCEECCCCCCCCEEEECCCCCCCC----CCCCCEEEEEEECCCC
T ss_conf 7776144526888721486224567664101489-8831021356883587624566555----4656577799886899
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99999958981999998998312465100356089862698169977971132357422379856556677899941001
Q 000454 638 ASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTM 717 (1491)
Q Consensus 638 ~~LAsgs~DG~I~IWdl~tGk~~~~~~~~~~fs~D~r~Li~d~~g~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l 717 (1491)
..++++..+...++|...+..........+++ +|.+.++....+..+. +|++..+.+...
T Consensus 306 ~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k--------~w~~~~~~~l~~----------- 365 (432)
T d1qksa2 306 GSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFK--------TLPIAEWAGITE----------- 365 (432)
T ss_dssp CCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEE--------EECHHHHHTCCS-----------
T ss_pred CEEEEEECCCCCCEEECCCCCCCCCEEEEEEE-EECHHHCCCCCCCCEE--------ECCCCCCCCCCC-----------
T ss_conf 76888726886410211267888770359999-9624610455678448--------633434444578-----------
Q ss_pred HHHCCCCCCCEEECCCCCEEEEEE--CCCCCCCEEECCCCCCCC
Q ss_conf 110015400189958998299951--888898089312788662
Q 000454 718 YQQRRLGALGIEWRPSSLKLAVGP--DFSLDQGYQLQPLADLDV 759 (1491)
Q Consensus 718 ~q~~~~~vl~lafSPDG~~LAvg~--d~S~D~~v~lwp~~~~~~ 759 (1491)
+...+..++|||||+++.++. +...++.+.+|+..+++.
T Consensus 366 ---~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~ 406 (432)
T d1qksa2 366 ---GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 406 (432)
T ss_dssp ---SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred ---CCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEE
T ss_conf ---99868976798999999999704888888689999999558
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.97 E-value=2.4e-25 Score=175.04 Aligned_cols=270 Identities=13% Similarity=0.133 Sum_probs=172.1
Q ss_pred EEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCCEEEECCCCCCEEEEEEC
Q ss_conf 99990897699998788918899706899969999957999999-99799819999799998603312677755999953
Q 000454 258 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA-SASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFS 336 (1491)
Q Consensus 258 LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLA-SGS~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafS 336 (1491)
.++++.|++|.|||+.+++.++++... ..+..++|+|||++|+ +++.++.|.+||+.+++.+..+..+. .+..++|+
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~ 82 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS 82 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCEEEEEEECC-CCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-CCCCCCCC
T ss_conf 999789998999999999599999889-9836999928989999997899989999999894103200024-64311000
Q ss_pred CCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE-EECCCCE
Q ss_conf 799950799999289919997067787654251379997324888788888999996328999877998899-9308951
Q 000454 337 PRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFV-TGSSDTL 415 (1491)
Q Consensus 337 Pdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~La-sGs~DG~ 415 (1491)
+++. ..++++..++.+.+|+..++.....+. ....+.+++|+|++..++ ++..+..
T Consensus 83 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~dg~~~~~~~~~~~~ 139 (301)
T d1l0qa2 83 PDGK--QVYVTNMASSTLSVIDTTSNTVAGTVK---------------------TGKSPLGLALSPDGKKLYVTNNGDKT 139 (301)
T ss_dssp TTSS--EEEEEETTTTEEEEEETTTTEEEEEEE---------------------CSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCC--CCCCCCCCCCEEEECCCCCCEEEEECC---------------------CCCCCEEEEEECCCCEEEEEECCCCC
T ss_conf 1111--111111111001100124302432024---------------------44442378760589715542011110
Q ss_pred EEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEE
Q ss_conf 99980899999899999840221048889810799826751222333568878888645555567880899927980999
Q 000454 416 ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAII 495 (1491)
Q Consensus 416 IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrI 495 (1491)
+.+|+..+ ......+.. ...
T Consensus 140 ~~~~~~~~---------~~~~~~~~~-~~~-------------------------------------------------- 159 (301)
T d1l0qa2 140 VSVINTVT---------KAVINTVSV-GRS-------------------------------------------------- 159 (301)
T ss_dssp EEEEETTT---------TEEEEEEEC-CSS--------------------------------------------------
T ss_pred EEEEECCC---------CCEEEECCC-CCC--------------------------------------------------
T ss_conf 01100014---------630353156-788--------------------------------------------------
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECC-CEEEEEECCCCCE
Q ss_conf 926888888532221111245799999999999999940006999972299994799899999546-6399998899945
Q 000454 496 WIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMD-CRICVWNAADGSL 574 (1491)
Q Consensus 496 WDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~D-G~I~IWDl~tgkl 574 (1491)
+..+++++++..++++..+ +.+.+|+......
T Consensus 160 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (301)
T d1l0qa2 160 -----------------------------------------------PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV 192 (301)
T ss_dssp -----------------------------------------------EEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred -----------------------------------------------CEEEEEECCCCCEEEECCCCCCCCCCCCCCEEE
T ss_conf -----------------------------------------------428886046540131012111111111110001
Q ss_pred EEEEECCCCCEEEEEEECCCCCEEEEE--ECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEE-EEECCCCEEE
Q ss_conf 899807998849999913999499999--5899199996899922899860786468999948999999-9958981999
Q 000454 575 VHSLTGHTESTYVLDVHPFNPRIAMSA--GYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASII-LSDDVGQLYI 651 (1491)
Q Consensus 575 i~tL~gHs~~VtsIafSPdd~~lLaSg--S~DGtIrIWDl~tGk~i~~l~~h~~~VtsIafSPDG~~LA-sgs~DG~I~I 651 (1491)
...+..+ ..+..++|++++..+++++ ..++.|.+||+.+++.+..+.. ...+..++|+|||++|+ ++..++.|.+
T Consensus 193 ~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v 270 (301)
T d1l0qa2 193 IDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSV 270 (301)
T ss_dssp EEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EECCCCC-CCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECC-CCCEEEEEEECCCCEEEEEECCCCEEEE
T ss_conf 1101335-7750311011110111100210000232365699819999848-9987799991898999999899996999
Q ss_pred EECCCCCCCC
Q ss_conf 9989983124
Q 000454 652 LNTGQGESQK 661 (1491)
Q Consensus 652 Wdl~tGk~~~ 661 (1491)
||+.+++...
T Consensus 271 ~D~~t~~~~~ 280 (301)
T d1l0qa2 271 IDTATNTITA 280 (301)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCEEEE
T ss_conf 9999995999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.97 E-value=5.1e-27 Score=185.83 Aligned_cols=307 Identities=11% Similarity=0.024 Sum_probs=219.3
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE-CCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCCEEEECCC
Q ss_conf 9996899999999089769999878891889970-689996999995799999-99979981999979999860331267
Q 000454 249 AIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISVLRGH 326 (1491)
Q Consensus 249 IaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~-gH~~~ItsIafSPDg~lL-ASGS~DGtIrIWDl~tgk~i~~L~gH 326 (1491)
++|++++++|++++.++.|.|||+.+++++.++. .+...+.+++|+|||+++ +++..++.|.+||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 55889996999986999799999999989999994899970459997898999999789993999967567131231036
Q ss_pred C------CCEEEEEECCCCCCEEEEEEEE------------CCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 7------7559999537999507999992------------899199970677876542513799973248887888889
Q 000454 327 T------AAVTAIAFSPRPGSVYQLLSSS------------DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1491)
Q Consensus 327 s------~~VtsIafSPdg~s~~~LiSgS------------~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~ 388 (1491)
. ..+..++|+|+++ +++++. .++.+.+|+..++.....+..
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~---~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------------ 140 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGK---EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT------------------ 140 (346)
T ss_dssp CSTTEEEECSSCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE------------------
T ss_pred CCCCCCCCCEEEEEEECCCC---EEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEE------------------
T ss_conf 54345477417999905888---899970577521565146762489985256326568873------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99996328999877998899930895199980899999899999840221048889810799826751222333568878
Q 000454 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1491)
Q Consensus 389 ~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~ 468 (1491)
......+..+.+++++.+++.+ +.+.+|++.+ ...+..+..+ .....+.++|++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~------------- 194 (346)
T d1jmxb_ 141 FPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKT---------GKYTVALPLR-NWNRKGYSAPDV------------- 194 (346)
T ss_dssp EECCSSCCCEEECTTSCEEEES---SSEEEECTTT---------CCEEEEECST-TCCCTTBCCCBC-------------
T ss_pred EECCCCEEEEEECCCCEEEEEC---CCCEEEECCC---------CCEEEEEECC-CCCCCEEEECCC-------------
T ss_conf 1024743999952787899847---9626998069---------9789999648-986623771255-------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEE
Q ss_conf 88864555556788089992798099992688888853222111124579999999999999994000699997229999
Q 000454 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVW 548 (1491)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIaf 548 (1491)
...++....++.+.+++.. ..+
T Consensus 195 ------------~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~ 216 (346)
T d1jmxb_ 195 ------------LYFWPHQSPRHEFSMLYTI----------------------------------------------ARF 216 (346)
T ss_dssp ------------CCCCCCCCTTCEEEEEEEE----------------------------------------------EEC
T ss_pred ------------CEEEEEECCCCCEEEEEEE----------------------------------------------EEE
T ss_conf ------------2899986499816765123----------------------------------------------111
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEE-EECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCC
Q ss_conf 47998999995466399998899945899-80799884999991399949999958991999968999228998607864
Q 000454 549 SLDNRFVLAAIMDCRICVWNAADGSLVHS-LTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR 627 (1491)
Q Consensus 549 SPDG~~LaSgs~DG~I~IWDl~tgkli~t-L~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~ 627 (1491)
......++++..+..+.+|+..++..... +..+...+..+.+++.+..++ ... ++.|.+||+.+++.+..+. ....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~v~d~~~~~~~~~~~-~~~~ 293 (346)
T d1jmxb_ 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI-YGV-LNRLAKYDLKQRKLIKAAN-LDHT 293 (346)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEE-EEE-ESEEEEEETTTTEEEEEEE-CSSC
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEE-EEC-CCEEEEEECCCCCEEEEEC-CCCC
T ss_conf 267325754047834999977788368787631566068889717997899-942-9838999899993999974-9997
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCC
Q ss_conf 689999489999999958981999998998312465
Q 000454 628 LVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 628 VtsIafSPDG~~LAsgs~DG~I~IWdl~tGk~~~~~ 663 (1491)
+.+++|||||++|++++.+|.|.|||+.+++.+...
T Consensus 294 ~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i 329 (346)
T d1jmxb_ 294 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329 (346)
T ss_dssp CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE
T ss_conf 789999689999999948992999999658797999
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=1e-25 Score=177.40 Aligned_cols=295 Identities=12% Similarity=0.046 Sum_probs=205.1
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEEEECC--CCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCCEEEECCCCC----
Q ss_conf 99999908976999987889188997068--9996999995799999-9997998199997999986033126777----
Q 000454 256 RYVITGSDDRLVKIWSMETAYCLASCRGH--EGDITDLAVSSNNALV-ASASNDCIIRVWRLPDGLPISVLRGHTA---- 328 (1491)
Q Consensus 256 k~LATGS~DGtIkIWDl~Tg~~l~tL~gH--~~~ItsIafSPDg~lL-ASGS~DGtIrIWDl~tgk~i~~L~gHs~---- 328 (1491)
+|+++++.|++|.|||+.+++++.++..+ ...+.+++|+|||++| ++++.++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 69999767998999999999499999877889982379999998999999789994999999999298887247773125
Q ss_pred -CEEEEEECCCCCCEEEEEEEE------------CCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf -559999537999507999992------------8991999706778765425137999732488878888899999632
Q 000454 329 -AVTAIAFSPRPGSVYQLLSSS------------DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1491)
Q Consensus 329 -~VtsIafSPdg~s~~~LiSgS------------~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V 395 (1491)
.+..++|+|+++ +++++. .+..+.+||..++.....+. ....+
T Consensus 82 ~~~~~v~~s~dg~---~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---------------------~~~~~ 137 (337)
T d1pbyb_ 82 KSLFGAALSPDGK---TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE---------------------APRQI 137 (337)
T ss_dssp ECTTCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE---------------------CCSSC
T ss_pred CCEEEEEECCCCC---EEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECC---------------------CCCCC
T ss_conf 4025489868775---79995047762034203455521203566775988414---------------------56872
Q ss_pred EEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89998779988999308951999808999998999998402210488898107998267512223335688788886455
Q 000454 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1491)
Q Consensus 396 ~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~ 475 (1491)
.+++|+|+|.++++++.+ +.+|+..+ ......+..+.. .....+.+++.
T Consensus 138 ~~~~~s~dg~~l~~~~~~--~~~~d~~~---------~~~~~~~~~~~~-~~~~~~~~~~~------------------- 186 (337)
T d1pbyb_ 138 TMLAWARDGSKLYGLGRD--LHVMDPEA---------GTLVEDKPIQSW-EAETYAQPDVL------------------- 186 (337)
T ss_dssp CCEEECTTSSCEEEESSS--EEEEETTT---------TEEEEEECSTTT-TTTTBCCCBCC-------------------
T ss_pred EEEEECCCCCEEEEECCC--CCEEEEEC---------CCEEEEEECCCC-CCCCEECCCCC-------------------
T ss_conf 189986888889997177--50566303---------727888614775-43311357763-------------------
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEE
Q ss_conf 55567880899927980999926888888532221111245799999999999999940006999972299994799899
Q 000454 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1491)
Q Consensus 476 ~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~L 555 (1491)
.....+...+....+. .....+...+
T Consensus 187 ------~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~ 212 (337)
T d1pbyb_ 187 ------AVWNQHESSGVMATPF------------------------------------------------YTARKDIDPA 212 (337)
T ss_dssp ------CCCCCCTTTTEEEEEE------------------------------------------------EEEBTTSCTT
T ss_pred ------EEECCCCCCCEEEEEE------------------------------------------------EEEEECCCEE
T ss_conf ------1401466531246632------------------------------------------------4441036604
Q ss_pred EEEECCCEEEEEECCCCCEEEE-EECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEEC
Q ss_conf 9995466399998899945899-807998849999913999499999589919999689992289986078646899994
Q 000454 556 LAAIMDCRICVWNAADGSLVHS-LTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFS 634 (1491)
Q Consensus 556 aSgs~DG~I~IWDl~tgkli~t-L~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~VtsIafS 634 (1491)
..+..++.+.+|+..++..... +..+...+..+.++| +..+++.+ ++.|++||+.+++.+..+. +...+.+++|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s 288 (337)
T d1pbyb_ 213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVS 288 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEEC
T ss_pred EECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEECC-CCEEEEEC--CCCEEEEECCCCCEEEEEC-CCCCEEEEEEC
T ss_conf 54036761799986888588898328875058887426-61399973--5528999898896999974-89988999997
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCCCCCC
Q ss_conf 89999999958981999998998312465
Q 000454 635 PDGASIILSDDVGQLYILNTGQGESQKDA 663 (1491)
Q Consensus 635 PDG~~LAsgs~DG~I~IWdl~tGk~~~~~ 663 (1491)
|||++|++++.+|.|.|||+.+++....+
T Consensus 289 ~dG~~l~v~~~~~~i~v~D~~t~~~v~~i 317 (337)
T d1pbyb_ 289 TDGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEE
T ss_conf 89999999949992999999987698999
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.96 E-value=7.4e-24 Score=165.39 Aligned_cols=268 Identities=12% Similarity=0.084 Sum_probs=197.8
Q ss_pred CCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEE-
Q ss_conf 7773223430589981679878999996899999-99908976999987889188997068999699999579999999-
Q 000454 225 KPSTMVQKMQNIKRVRGHRNAVYCAIFDRSGRYV-ITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVAS- 302 (1491)
Q Consensus 225 ~~~~~v~t~k~i~tL~GH~~~VtsIaFSpDGk~L-ATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLAS- 302 (1491)
+..|+..+.+.++++... ..+..++|+|||++| ++++.++.|.+||+.+++.+..+..+. .+..++|++++..++.
T Consensus 14 v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 91 (301)
T d1l0qa2 14 ISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVT 91 (301)
T ss_dssp EEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCEEEEEEECC-CCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-CCCCCCCCCCCCCCCCC
T ss_conf 999999999599999889-9836999928989999997899989999999894103200024-64311000111111111
Q ss_pred EECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 97998199997999986033126777559999537999507999992899199970677876542513799973248887
Q 000454 303 ASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNM 382 (1491)
Q Consensus 303 GS~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~ 382 (1491)
+..++.+.+|+..+++....+.. ...+.++.|+|++. ..++++..++.+.+|+..+......+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 155 (301)
T d1l0qa2 92 NMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGK--KLYVTNNGDKTVSVINTVTKAVINTVS------------- 155 (301)
T ss_dssp ETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSS--EEEEEETTTTEEEEEETTTTEEEEEEE-------------
T ss_pred CCCCCEEEECCCCCCEEEEECCC-CCCCEEEEEECCCC--EEEEEECCCCCEEEEECCCCCEEEECC-------------
T ss_conf 11110011001243024320244-44423787605897--155420111100110001463035315-------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCEEEEECCC-CEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCC
Q ss_conf 8888899999632899987799889993089-519998089999989999984022104888981079982675122233
Q 000454 383 APSSSAGPQSHQIFCCAFNANGTVFVTGSSD-TLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFS 461 (1491)
Q Consensus 383 ~~~~~~~~h~~~V~sIafSPDG~~LasGs~D-G~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s 461 (1491)
....+.++++++++..++++..+ +.+.+|.... ........
T Consensus 156 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~--------------------- 197 (301)
T d1l0qa2 156 --------VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT---------NSVIDTVK--------------------- 197 (301)
T ss_dssp --------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---------TEEEEEEE---------------------
T ss_pred --------CCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCC---------EEEEECCC---------------------
T ss_conf --------6788428886046540131012111111111110---------00111013---------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 35688788886455555678808999279809999268888885322211112457999999999999999400069999
Q 000454 462 LADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPR 541 (1491)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~ 541 (1491)
...
T Consensus 198 -----------------------------------------------------------------------------~~~ 200 (301)
T d1l0qa2 198 -----------------------------------------------------------------------------VEA 200 (301)
T ss_dssp -----------------------------------------------------------------------------CSS
T ss_pred -----------------------------------------------------------------------------CCC
T ss_conf -----------------------------------------------------------------------------357
Q ss_pred CEEEEEECCCCCEEEEEEC---CCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE
Q ss_conf 7229999479989999954---6639999889994589980799884999991399949999958991999968999228
Q 000454 542 GVNMIVWSLDNRFVLAAIM---DCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPI 618 (1491)
Q Consensus 542 ~VtsIafSPDG~~LaSgs~---DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i 618 (1491)
.+..++|++++..++++.. ++.|++||+.+++++..+..+ ..+.+++|+|++..++++++.|+.|.+||+.+++++
T Consensus 201 ~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279 (301)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCC-CCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEE
T ss_conf 7503110111101111002100002323656998199998489-987799991898999999899996999999999599
Q ss_pred EEEEECCC
Q ss_conf 99860786
Q 000454 619 RIYEISRF 626 (1491)
Q Consensus 619 ~~l~~h~~ 626 (1491)
.++.....
T Consensus 280 ~~~~vg~~ 287 (301)
T d1l0qa2 280 ATMAVGKN 287 (301)
T ss_dssp EEEECSSS
T ss_pred EEEECCCC
T ss_conf 99968999
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.96 E-value=1.2e-23 Score=163.95 Aligned_cols=201 Identities=11% Similarity=-0.051 Sum_probs=138.7
Q ss_pred ECCCCCCEEEEEECCCCCEEEEE-----ECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE---------
Q ss_conf 81679878999996899999999-----0897699998788918899706899969999957999999997---------
Q 000454 239 VRGHRNAVYCAIFDRSGRYVITG-----SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS--------- 304 (1491)
Q Consensus 239 L~GH~~~VtsIaFSpDGk~LATG-----S~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS--------- 304 (1491)
..++.+++.+++++|||++++.. +..+.|.+||..+++.+.++..+... .++|+|||++|+++.
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~ 93 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCC
T ss_conf 456789865630189997899973422578765999989999799999579886--079868999899996057753212
Q ss_pred -CCCEEEEEECCCCCCEEEECCCCCCE-------EEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCC
Q ss_conf -99819999799998603312677755-------9999537999507999992899199970677876542513799973
Q 000454 305 -NDCIIRVWRLPDGLPISVLRGHTAAV-------TAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDA 376 (1491)
Q Consensus 305 -~DGtIrIWDl~tgk~i~~L~gHs~~V-------tsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~ 376 (1491)
.++.|.+||+.+++++..+..+.... ..+.|+++++.. ++.....++.+.+|+....+.....
T Consensus 94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~-~v~~~~~~~~~~~~~~~~~~~~~~~-------- 164 (373)
T d2madh_ 94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADL-LFFQFAAGPAVGLVVQGGSSDDQLL-------- 164 (373)
T ss_pred CCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCE-EEEEECCCCCEEEEECCCCEEEEEE--------
T ss_conf 4531899997778938889726885136851689708998589937-9999869874677623687289982--------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCEE-EEECCCCEEEEEECCCCCCCCCCCCCCEEEEEC------CCCCCCEEE
Q ss_conf 2488878888899999632899987799889-993089519998089999989999984022104------888981079
Q 000454 377 VAGRNMAPSSSAGPQSHQIFCCAFNANGTVF-VTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS------GHENDVNYV 449 (1491)
Q Consensus 377 ~~g~~~~~~~~~~~h~~~V~sIafSPDG~~L-asGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~------gH~~~V~sI 449 (1491)
..+.++.++|+|..+ ++.+.|+.+.+|+...... ..... +.......+
T Consensus 165 ----------------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 219 (373)
T d2madh_ 165 ----------------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA---------GAGLVGAMLTAAQNLLTQPA 219 (373)
T ss_pred ----------------CCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEE---------EEEEEEECCCCCCCCEEEEE
T ss_conf ----------------45206999628991999994799399997477426---------67886300366753043458
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 98267512223335688788886455555678808999279809999268888
Q 000454 450 QFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1491)
Q Consensus 450 afSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k 502 (1491)
.+.++ ..++..+.++.+.+|+.....
T Consensus 220 ~~~~~---------------------------~~~~~~~~~~~v~~~~~~~~~ 245 (373)
T d2madh_ 220 QANKS---------------------------GRIVWPVYSGKILQADISAAG 245 (373)
T ss_pred EECCC---------------------------CEEEEECCCCEEEEEECCCCE
T ss_conf 87899---------------------------429992589659999768990
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=3.7e-22 Score=154.41 Aligned_cols=297 Identities=9% Similarity=-0.031 Sum_probs=198.3
Q ss_pred CEEEECCCCCCCCCCCCCEEEEEECCC--CCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCEEEEEEECCCC-----C
Q ss_conf 010001345777322343058998167--9878999996899999-9990897699998788918899706899-----9
Q 000454 216 IRAACYAIAKPSTMVQKMQNIKRVRGH--RNAVYCAIFDRSGRYV-ITGSDDRLVKIWSMETAYCLASCRGHEG-----D 287 (1491)
Q Consensus 216 l~~~~~~~a~~~~~v~t~k~i~tL~GH--~~~VtsIaFSpDGk~L-ATGS~DGtIkIWDl~Tg~~l~tL~gH~~-----~ 287 (1491)
+.++.....+..|+..+.+.++++..+ ...+.+++|+|||++| ++++.++.|.+||+.+++.+..+..+.. .
T Consensus 4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~ 83 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS 83 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred EEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCC
T ss_conf 99976799899999999949999987788998237999999899999978999499999999929888724777312540
Q ss_pred EEEEEECCCCCEEEEEE------------CCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEE
Q ss_conf 69999957999999997------------998199997999986033126777559999537999507999992899199
Q 000454 288 ITDLAVSSNNALVASAS------------NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCR 355 (1491)
Q Consensus 288 ItsIafSPDg~lLASGS------------~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIr 355 (1491)
+..++|+|++++++++. .+..+.+|+..++..+..+.. ...+..++|+|++. ++++++.+ +.
T Consensus 84 ~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~---~l~~~~~~--~~ 157 (337)
T d1pbyb_ 84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGS---KLYGLGRD--LH 157 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSS---CEEEESSS--EE
T ss_pred EEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCC-CCCCEEEEECCCCC---EEEEECCC--CC
T ss_conf 25489868775799950477620342034555212035667759884145-68721899868888---89997177--50
Q ss_pred EECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE-CCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 9706778765425137999732488878888899999632899987799889993-089519998089999989999984
Q 000454 356 IWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTG-SSDTLARVWNACKPNTDDSDQPNH 434 (1491)
Q Consensus 356 IWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasG-s~DG~IrIWDl~t~~~~~s~~~~~ 434 (1491)
+||..+++....+..... .....+.+++..+... ...+...++...
T Consensus 158 ~~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 204 (337)
T d1pbyb_ 158 VMDPEAGTLVEDKPIQSW---------------------EAETYAQPDVLAVWNQHESSGVMATPFYT------------ 204 (337)
T ss_dssp EEETTTTEEEEEECSTTT---------------------TTTTBCCCBCCCCCCCCTTTTEEEEEEEE------------
T ss_pred EEEEECCCEEEEEECCCC---------------------CCCCEECCCCCEEECCCCCCCEEEEEEEE------------
T ss_conf 566303727888614775---------------------43311357763140146653124663244------------
Q ss_pred EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 02210488898107998267512223335688788886455555678808999279809999268888885322211112
Q 000454 435 EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAY 514 (1491)
Q Consensus 435 ~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~ 514 (1491)
.... ...+.....++.+.+|+...+..
T Consensus 205 ----------------~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~----------- 231 (337)
T d1pbyb_ 205 ----------------ARKD--------------------------IDPADPTAYRTGLLTMDLETGEM----------- 231 (337)
T ss_dssp ----------------EBTT--------------------------SCTTSGGGEEEEEEEEETTTCCE-----------
T ss_pred ----------------EEEC--------------------------CCEEEECCCCCCEEEEECCCCCE-----------
T ss_conf ----------------4103--------------------------66045403676179998688858-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 45799999999999999940006999972299994799899999546639999889994589980799884999991399
Q 000454 515 HLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFN 594 (1491)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd 594 (1491)
.......+...+..+++++++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+| +
T Consensus 232 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-d 290 (337)
T d1pbyb_ 232 -----------------AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-D 290 (337)
T ss_dssp -----------------EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-T
T ss_pred -----------------EEEEECCCCCCEEEEEECCCCEEEEEC--CCCEEEEECCCCCEEEEEC-CCCCEEEEEECC-C
T ss_conf -----------------889832887505888742661399973--5528999898896999974-899889999978-9
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEEEEECC
Q ss_conf 9499999589919999689992289986078
Q 000454 595 PRIAMSAGYDGKTIVWDIWEGIPIRIYEISR 625 (1491)
Q Consensus 595 ~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~ 625 (1491)
+++|++++.|+.|+|||+.+++.+..+....
T Consensus 291 G~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g 321 (337)
T d1pbyb_ 291 GSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp SCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred CCEEEEEECCCCEEEEECCCCCEEEEEECCC
T ss_conf 9999999499929999999876989998899
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=1.2e-22 Score=157.65 Aligned_cols=316 Identities=11% Similarity=-0.006 Sum_probs=186.0
Q ss_pred CEEEEEECCCCCEEEEEE-----CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCEE
Q ss_conf 789999968999999990-----897699998788918899706899969999957999999997----------99819
Q 000454 245 AVYCAIFDRSGRYVITGS-----DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS----------NDCII 309 (1491)
Q Consensus 245 ~VtsIaFSpDGk~LATGS-----~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS----------~DGtI 309 (1491)
++.-.+.+|||++++... .+..|.+||..+++.+.++..+... .++|+|||++|++.+ .++.|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf 717476589999999982664777671999999999499999899998--569948999999996777642015899989
Q ss_pred EEEECCCCCCEEEECCCC-------CCEEEEEECCCCCCEEEEEEE--ECCCCEEEECCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 999799998603312677-------755999953799950799999--28991999706778765425137999732488
Q 000454 310 RVWRLPDGLPISVLRGHT-------AAVTAIAFSPRPGSVYQLLSS--SDDGTCRIWDARYSQFSPRIYIPRPSDAVAGR 380 (1491)
Q Consensus 310 rIWDl~tgk~i~~L~gHs-------~~VtsIafSPdg~s~~~LiSg--S~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~ 380 (1491)
++||+.+++.+..+..+. .....++|+|+++ +++.+ +.+..+.+|+..++.....+..+......
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 154 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK---TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF--- 154 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS---EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE---
T ss_pred EEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCC---EEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEE---
T ss_conf 99999999798898058864031179873499933887---157732798820454305788376677058740473---
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCEEEEEC-CCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCC
Q ss_conf 8788888999996328999877998899930-895199980899999899999840221048889810799826751222
Q 000454 381 NMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-SDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASR 459 (1491)
Q Consensus 381 ~~~~~~~~~~h~~~V~sIafSPDG~~LasGs-~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~ 459 (1491)
.......+.+++++..++... .++.+.+++..... ..+...+....+.+.
T Consensus 155 ----------~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~----- 205 (355)
T d2bbkh_ 155 ----------PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH--------------PEDEFLINHPAYSQK----- 205 (355)
T ss_dssp ----------EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS--------------CTTSCBCSCCEEETT-----
T ss_pred ----------ECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCC--------------CEECCEEEECCCCCC-----
T ss_conf ----------069963699938999899983478737999624333--------------000110610215389-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 33356887888864555556788089992798099992688888853222111124579999999999999994000699
Q 000454 460 FSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPT 539 (1491)
Q Consensus 460 ~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h 539 (1491)
...++.++.++.+.+|++..+........... ..........
T Consensus 206 ---------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 247 (355)
T d2bbkh_ 206 ---------------------AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL-----------------TEAERADGWR 247 (355)
T ss_dssp ---------------------TTEEEEEBTTSEEEEEECTTSSCEECCCEESS-----------------CHHHHHTTEE
T ss_pred ---------------------CCEEEEECCCCEEEEEECCCCCEEEEECCCCC-----------------CCCEEEEEEE
T ss_conf ---------------------97388746998299996589907998445784-----------------4126854330
Q ss_pred CCCEEEEEECCCCCEEEEEECC----------CEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCC-EEEEEECCCCEE
Q ss_conf 9972299994799899999546----------63999988999458998079988499999139994-999995899199
Q 000454 540 PRGVNMIVWSLDNRFVLAAIMD----------CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR-IAMSAGYDGKTI 608 (1491)
Q Consensus 540 ~~~VtsIafSPDG~~LaSgs~D----------G~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~-lLaSgS~DGtIr 608 (1491)
......+++++++..++....+ ..|.+||..+++.+..+.. ...+.+++|+|++.. ++++++.|+.|.
T Consensus 248 p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~ 326 (355)
T d2bbkh_ 248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLY 326 (355)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred CCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEE
T ss_conf 351089998079976788740687126517997599986788849899668-9987799992899969999978999899
Q ss_pred EEECCCCCEEEEEEECCCCEEEEEECCC
Q ss_conf 9968999228998607864689999489
Q 000454 609 VWDIWEGIPIRIYEISRFRLVDGKFSPD 636 (1491)
Q Consensus 609 IWDl~tGk~i~~l~~h~~~VtsIafSPD 636 (1491)
+||+.+++.++.+..+......+.+.++
T Consensus 327 v~D~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 327 IHDAESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred EEECCCCCEEEEEECCCCCCCEEEECCC
T ss_conf 9999999899999286979658996999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.92 E-value=1.2e-22 Score=157.65 Aligned_cols=75 Identities=7% Similarity=-0.028 Sum_probs=35.8
Q ss_pred EECCCCCEEEEEECCCEEEEEECCCCCCEEEEC-CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEE
Q ss_conf 995799999999799819999799998603312-67775599995379995079999928991999706778765425
Q 000454 292 AVSSNNALVASASNDCIIRVWRLPDGLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1491)
Q Consensus 292 afSPDg~lLASGS~DGtIrIWDl~tgk~i~~L~-gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i 368 (1491)
+|++++++|++++.++.|.+||+.+++.+.++. .+...+.+++|+||++ ..++++..++.|.+||+.+++....+
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~--~l~v~~~~~~~v~~~d~~t~~~~~~~ 78 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR--TAYVLNNHYGDIYGIDLDTCKNTFHA 78 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS--EEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCC--EEEEEECCCCCEEEEECCCCEEEEEE
T ss_conf 58899969999869997999999999899999948999704599978989--99999789993999967567131231
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.92 E-value=1.2e-20 Score=144.74 Aligned_cols=301 Identities=8% Similarity=-0.081 Sum_probs=188.0
Q ss_pred CCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCEEEEEECCCCEEEEEEECCCCCE-------EE
Q ss_conf 32234305899816798789999968999999990----------89769999878891889970689996-------99
Q 000454 228 TMVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGS----------DDRLVKIWSMETAYCLASCRGHEGDI-------TD 290 (1491)
Q Consensus 228 ~~v~t~k~i~tL~GH~~~VtsIaFSpDGk~LATGS----------~DGtIkIWDl~Tg~~l~tL~gH~~~I-------ts 290 (1491)
++..+.+.+.++.++... .++|+|||++|++++ .++.|.+||..+++++..+..+.... ..
T Consensus 52 ~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~ 129 (373)
T d2madh_ 52 LDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWM 129 (373)
T ss_pred EECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCC
T ss_conf 989999799999579886--079868999899996057753212453189999777893888972688513685168970
Q ss_pred EEECCCCCEEEEEE--CCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEE
Q ss_conf 99957999999997--9981999979999860331267775599995379995079999928991999706778765425
Q 000454 291 LAVSSNNALVASAS--NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRI 368 (1491)
Q Consensus 291 IafSPDg~lLASGS--~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i 368 (1491)
+.|+++++.++... .++.+.+|+....+.... .....++.|+|++. ..+++.+.|+.+.+|+..........
T Consensus 130 ~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~--~~~v~~~~dg~~~~~~~~~~~~~~~~ 203 (373)
T d2madh_ 130 NANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL----LSSPTCYHIHPGAP--STFYLLCAQGGLAKTDHAGGAAGAGL 203 (373)
T ss_pred EEEEECCCCEEEEEECCCCCEEEEECCCCEEEEE----ECCCEEEEEECCCC--CEEEEECCCCEEEEEECCCCEEEEEE
T ss_conf 8998589937999986987467762368728998----24520699962899--19999947993999974774266788
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEE
Q ss_conf 13799973248887888889999963289998779988999308951999808999998999998402210488898107
Q 000454 369 YIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNY 448 (1491)
Q Consensus 369 ~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~s 448 (1491)
..... ..........+.+.+++.++ ..+.++.+.+|+..... .........+......
T Consensus 204 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~ 261 (373)
T d2madh_ 204 VGAML--------------TAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAAG-------ATNKAPIDALSGGRKA 261 (373)
T ss_pred EEECC--------------CCCCCCEEEEEEECCCCEEE-EECCCCEEEEEECCCCE-------EEEEEEECCCCCCEEE
T ss_conf 63003--------------66753043458878994299-92589659999768990-------7897763056475786
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99826751222333568878888645555567880899927980999926888888532221111245799999999999
Q 000454 449 VQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPP 528 (1491)
Q Consensus 449 IafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~ 528 (1491)
+.+.|.. ...+..+.|+...
T Consensus 262 ~~~~~~~--------------------------~~~~~~~~d~~~~---------------------------------- 281 (373)
T d2madh_ 262 DTWRPGG--------------------------WQQVAYLKSSDGI---------------------------------- 281 (373)
T ss_pred EEECCCC--------------------------CEEEEEECCCCEE----------------------------------
T ss_conf 6413674--------------------------1335771499759----------------------------------
Q ss_pred CCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCC-EEEEEECCCCE
Q ss_conf 99994000699997229999479989999954663999988999458998079988499999139994-99999589919
Q 000454 529 RGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR-IAMSAGYDGKT 607 (1491)
Q Consensus 529 ~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~-lLaSgS~DGtI 607 (1491)
..+...+..++....++.+.+||..+++.+..+. +...+..++|+|++.. ++++++.|+.|
T Consensus 282 -----------------~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v 343 (373)
T d2madh_ 282 -----------------YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVL 343 (373)
T ss_pred -----------------EEECCCCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEE
T ss_conf -----------------9954888247862589869999899996989866-8998258999989998999996799929
Q ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCC
Q ss_conf 99968999228998607864689999489
Q 000454 608 IVWDIWEGIPIRIYEISRFRLVDGKFSPD 636 (1491)
Q Consensus 608 rIWDl~tGk~i~~l~~h~~~VtsIafSPD 636 (1491)
++||+.+++.+..+..+......+++.++
T Consensus 344 ~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 344 HIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred EEEECCCCCEEEEECCCCCCCCEEEEECC
T ss_conf 99999999899998888989818998468
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=7.3e-20 Score=139.58 Aligned_cols=146 Identities=8% Similarity=0.117 Sum_probs=98.3
Q ss_pred EEEEEECCCEEEEEECCCCEEEEEE--ECCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCCEEEEC---CCCCCE
Q ss_conf 9999908976999987889188997--06899969999957999999997-99819999799998603312---677755
Q 000454 257 YVITGSDDRLVKIWSMETAYCLASC--RGHEGDITDLAVSSNNALVASAS-NDCIIRVWRLPDGLPISVLR---GHTAAV 330 (1491)
Q Consensus 257 ~LATGS~DGtIkIWDl~Tg~~l~tL--~gH~~~ItsIafSPDg~lLASGS-~DGtIrIWDl~tgk~i~~L~---gHs~~V 330 (1491)
.+++++.|++|+||++.....+..+ ..|.+.+..|+|+|||++|++++ .|+.|++|++........+. .+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 99987899938999983999769999975799886899958979999997789969999996898707985301369985
Q ss_pred EEEEECCCCCCEEEEEEEE-CCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 9999537999507999992-899199970677876542513799973248887888889999963289998779988999
Q 000454 331 TAIAFSPRPGSVYQLLSSS-DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409 (1491)
Q Consensus 331 tsIafSPdg~s~~~LiSgS-~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~Las 409 (1491)
..++|+|+++ +|++++ .++.|.+|+............ ..+...+.++.++|+++.+++
T Consensus 86 ~~l~~spDg~---~l~v~~~~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~v~~s~d~~~~~~ 144 (333)
T d1ri6a_ 86 THISTDHQGQ---FVFVGSYNAGNVSVTRLEDGLPVGVVDV------------------VEGLDGCHSANISPDNRTLWV 144 (333)
T ss_dssp SEEEECTTSS---EEEEEETTTTEEEEEEEETTEEEEEEEE------------------ECCCTTBCCCEECTTSSEEEE
T ss_pred EEEEECCCCC---EEEECCCCCCCEEEECCCCCCCEECCCC------------------CCCCCCCEEEEEEECCEEEEC
T ss_conf 4999959998---8742056888302200111000000100------------------377853149886301013102
Q ss_pred ECC-CCEEEEEECCC
Q ss_conf 308-95199980899
Q 000454 410 GSS-DTLARVWNACK 423 (1491)
Q Consensus 410 Gs~-DG~IrIWDl~t 423 (1491)
++. +..|.+|+...
T Consensus 145 ~~~~~~~i~~~~~~~ 159 (333)
T d1ri6a_ 145 PALKQDRICLFTVSD 159 (333)
T ss_dssp EEGGGTEEEEEEECT
T ss_pred CCCCCCEEEEEEECC
T ss_conf 565542056897326
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=7.6e-20 Score=139.47 Aligned_cols=285 Identities=10% Similarity=0.097 Sum_probs=145.9
Q ss_pred EEEEEECCCEEEEEECCCCCCEEEEC--CCCCCEEEEEECCCCCCEEEE-EEEECCCCEEEECCCCCCCCCEEECCCCCC
Q ss_conf 99999799819999799998603312--677755999953799950799-999289919997067787654251379997
Q 000454 299 LVASASNDCIIRVWRLPDGLPISVLR--GHTAAVTAIAFSPRPGSVYQL-LSSSDDGTCRIWDARYSQFSPRIYIPRPSD 375 (1491)
Q Consensus 299 lLASGS~DGtIrIWDl~tgk~i~~L~--gHs~~VtsIafSPdg~s~~~L-iSgS~DGtIrIWDl~tg~~i~~i~~~~~~~ 375 (1491)
.+++++.++.|++|++.....+..+. .+.+.+..|+|+||++ +| +++..|+.|.+|++............
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~---~L~v~~~~d~~i~~~~i~~~~~~~~~~~~---- 78 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR---YLYVGVRPEFRVLAYRIAPDDGALTFAAE---- 78 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS---EEEEEETTTTEEEEEEECTTTCCEEEEEE----
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCC---EEEEEECCCCEEEEEEEECCCCCEEEEEE----
T ss_conf 99987899938999983999769999975799886899958979---99999778996999999689870798530----
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC-CCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCC
Q ss_conf 3248887888889999963289998779988999308-951999808999998999998402210488898107998267
Q 000454 376 AVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSS-DTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGC 454 (1491)
Q Consensus 376 ~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~-DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpd 454 (1491)
......+..++|+|||++|++++. ++.|.+|+..... .........+...+.++.++|+
T Consensus 79 -------------~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~s~d 138 (333)
T d1ri6a_ 79 -------------SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-------PVGVVDVVEGLDGCHSANISPD 138 (333)
T ss_dssp -------------EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-------EEEEEEEECCCTTBCCCEECTT
T ss_pred -------------CCCCCCCEEEEECCCCCEEEECCCCCCCEEEECCCCCC-------CEECCCCCCCCCCCEEEEEEEC
T ss_conf -------------13699854999959998874205688830220011100-------0000100377853149886301
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE-EECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 51222333568878888645555567880899-92798099992688888853222111124579999999999999994
Q 000454 455 AVASRFSLADSSKEDSTPKFKNSWFCHDNIVT-CSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPR 533 (1491)
Q Consensus 455 g~as~~s~~~~~~~~~~~~~~~~~~~~~~LvS-gS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (1491)
+ ..++. ...+..+.+|+........... ..
T Consensus 139 ~--------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------------------~~ 169 (333)
T d1ri6a_ 139 N--------------------------RTLWVPALKQDRICLFTVSDDGHLVAQD-----------------------PA 169 (333)
T ss_dssp S--------------------------SEEEEEEGGGTEEEEEEECTTSCEEEEE-----------------------EE
T ss_pred C--------------------------EEEECCCCCCCEEEEEEECCCCCCEEEE-----------------------CE
T ss_conf 0--------------------------1310256554205689732687410010-----------------------00
Q ss_pred EECCCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCC----EEEEEE------CCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 00069999722999947998999995-46639999889994----589980------79988499999139994999995
Q 000454 534 QRILPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGS----LVHSLT------GHTESTYVLDVHPFNPRIAMSAG 602 (1491)
Q Consensus 534 ~~l~~h~~~VtsIafSPDG~~LaSgs-~DG~I~IWDl~tgk----li~tL~------gHs~~VtsIafSPdd~~lLaSgS 602 (1491)
............++|++++.+++... ..+...+|+..... ....+. ........+++++++..+++.+.
T Consensus 170 ~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~ 249 (333)
T d1ri6a_ 170 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR 249 (333)
T ss_dssp EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECC
T ss_conf 13340388752799960201478620466721788510355520210022343068776553126899515672055045
Q ss_pred CCCCEEEEECCCCCEEEEE---EECCCCEEEEEECCCCCEEEEEEC-CCCEEEEEC--CCCCC
Q ss_conf 8991999968999228998---607864689999489999999958-981999998--99831
Q 000454 603 YDGKTIVWDIWEGIPIRIY---EISRFRLVDGKFSPDGASIILSDD-VGQLYILNT--GQGES 659 (1491)
Q Consensus 603 ~DGtIrIWDl~tGk~i~~l---~~h~~~VtsIafSPDG~~LAsgs~-DG~I~IWdl--~tGk~ 659 (1491)
.++.+.+|++........+ ......+..++|+|||++|++++. ++.|.+|++ .+|++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 250 TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCE
T ss_conf 688278788739997899999967899762899907989999998899939999997999968
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=5.8e-21 Score=146.71 Aligned_cols=297 Identities=13% Similarity=0.048 Sum_probs=186.3
Q ss_pred CEEEEEECCCCCEEEEEE-----CCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEE----------ECC
Q ss_conf 969999957999999997-----99819999799998603312677755999953799950799999----------289
Q 000454 287 DITDLAVSSNNALVASAS-----NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSS----------SDD 351 (1491)
Q Consensus 287 ~ItsIafSPDg~lLASGS-----~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSg----------S~D 351 (1491)
++.-.+.+||++.++... .+..|.+||..+++.+..+..+... .++|+||++ +|+++ ..+
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~---~l~v~~~~~~~~~~g~~d 77 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGS---FIAHASTVFSRIARGERT 77 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSS---CEEEEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCC---EEEEEECCCCCCCCCCCC
T ss_conf 717476589999999982664777671999999999499999899998--569948999---999996777642015899
Q ss_pred CCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEC--CCCEEEEEECCCCCCCCC
Q ss_conf 919997067787654251379997324888788888999996328999877998899930--895199980899999899
Q 000454 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS--SDTLARVWNACKPNTDDS 429 (1491)
Q Consensus 352 GtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs--~DG~IrIWDl~t~~~~~s 429 (1491)
+.|++||+.+++....+..+...... .......++|++++..+++.. .+..+.+|+..+
T Consensus 78 ~~v~v~D~~t~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~------ 138 (355)
T d2bbkh_ 78 DYVEVFDPVTLLPTADIELPDAPRFL-------------VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG------ 138 (355)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCC-------------BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT------
T ss_pred CEEEEEECCCCCEEEEEECCCCCEEE-------------CCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCC------
T ss_conf 98999999999798898058864031-------------17987349993388715773279882045430578------
Q ss_pred CCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf 99984022104888981079982675122233356887888864555556788089992798099992688888853222
Q 000454 430 DQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAAR 509 (1491)
Q Consensus 430 ~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~ 509 (1491)
...+..+..+.... ..+.+ ...++..+.||...++............
T Consensus 139 ---~~~~~~~~~~~~~~----~~~~~-------------------------~~~~~~~~~dg~~~~v~~~~~~~~~~~~- 185 (355)
T d2bbkh_ 139 ---KAFKRMLDVPDCYH----IFPTA-------------------------PDTFFMHCRDGSLAKVAFGTEGTPEITH- 185 (355)
T ss_dssp ---TEEEEEEECCSEEE----EEEEE-------------------------TTEEEEEETTSCEEEEECCSSSCCEEEE-
T ss_pred ---CCEEEEEECCCCCE----EEECC-------------------------CCCEEEECCCCCEEEEEECCCCEEEEEE-
T ss_conf ---83766770587404----73069-------------------------9636999389998999834787379996-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE--EEECCC-----
Q ss_conf 1111245799999999999999940006999972299994799899999546639999889994589--980799-----
Q 000454 510 WTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVH--SLTGHT----- 582 (1491)
Q Consensus 510 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~--tL~gHs----- 582 (1491)
. ......+...+....+++++..++.++.++.+++|++..+.... ....+.
T Consensus 186 ---~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 243 (355)
T d2bbkh_ 186 ---T-------------------EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 243 (355)
T ss_dssp ---C-------------------CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred ---C-------------------CCCCCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEE
T ss_conf ---2-------------------433300011061021538997388746998299996589907998445784412685
Q ss_pred -----CCEEEEEEECCCCCEEEEEEC---------CCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCE--EEEEECC
Q ss_conf -----884999991399949999958---------991999968999228998607864689999489999--9999589
Q 000454 583 -----ESTYVLDVHPFNPRIAMSAGY---------DGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGAS--IILSDDV 646 (1491)
Q Consensus 583 -----~~VtsIafSPdd~~lLaSgS~---------DGtIrIWDl~tGk~i~~l~~h~~~VtsIafSPDG~~--LAsgs~D 646 (1491)
.....+++++++..+++.... ...|.+||..+++.+..+.. ...+.+++|+|||+. ++++..+
T Consensus 244 ~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d 322 (355)
T d2bbkh_ 244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGD 322 (355)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTT
T ss_pred EEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCEEEEEEECCC
T ss_conf 4330351089998079976788740687126517997599986788849899668-998779999289996999997899
Q ss_pred CCEEEEECCCCCCCCCC
Q ss_conf 81999998998312465
Q 000454 647 GQLYILNTGQGESQKDA 663 (1491)
Q Consensus 647 G~I~IWdl~tGk~~~~~ 663 (1491)
+.|.+||+.+|+.++.+
T Consensus 323 ~~i~v~D~~tg~~~~~i 339 (355)
T d2bbkh_ 323 KTLYIHDAESGEELRSV 339 (355)
T ss_dssp TEEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCCCEEEEE
T ss_conf 98999999999899999
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.85 E-value=4.6e-18 Score=127.94 Aligned_cols=388 Identities=9% Similarity=0.009 Sum_probs=202.9
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEEC-----CCCCEEEEEECCCCCEEEEEEC---------CCEEEEEE
Q ss_conf 999968999999990897699998788918899706-----8999699999579999999979---------98199997
Q 000454 248 CAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG-----HEGDITDLAVSSNNALVASASN---------DCIIRVWR 313 (1491)
Q Consensus 248 sIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~g-----H~~~ItsIafSPDg~lLASGS~---------DGtIrIWD 313 (1491)
.+.|.+++.++.. .++.|.+|++.+++....+.. |...|.++.||||+++|+.++. ++.+.|||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEECCCCEEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEE
T ss_conf 7896899979997--59949999889997899970156443167654059989889799997771000104673499998
Q ss_pred CCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998603312677755999953799950799999289919997067787654251379997324888788888999996
Q 000454 314 LPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSH 393 (1491)
Q Consensus 314 l~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~ 393 (1491)
+.+++ +..+..+...+..+.|+|+|+ .++.. .++.+.+|+..++................+..... .......
T Consensus 99 ~~~~~-~~~l~~~~~~~~~~~~SPDG~---~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~--~~~~~~~ 171 (470)
T d2bgra1 99 LNKRQ-LITEERIPNNTQWVTWSPVGH---KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV--YEEEVFS 171 (470)
T ss_dssp TTTTE-ECCSSCCCTTEEEEEECSSTT---CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH--HHHHTSS
T ss_pred CCCCC-CCCCCCCCCCCCCCCCCCCCC---EEEEE-ECCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEE--EEEEECC
T ss_conf 98885-131246874231010146764---13575-14641379889994653210147774053543201--1210047
Q ss_pred CEEEEEECCCCCEEEEECCCCE-EEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3289998779988999308951-999808999998999998402210488898107998267512223335688788886
Q 000454 394 QIFCCAFNANGTVFVTGSSDTL-ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTP 472 (1491)
Q Consensus 394 ~V~sIafSPDG~~LasGs~DG~-IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~ 472 (1491)
....+.|+|||+.|+....|.. +..|.+..... .......+..+.+...+
T Consensus 172 ~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~------------~~~~~~~~~~~~~~~~g----------------- 222 (470)
T d2bgra1 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD------------ESLQYPKTVRVPYPKAG----------------- 222 (470)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS------------TTCSSCEEEEEECCBTT-----------------
T ss_pred CCCCCEECCCCCCCCEEEECCCCCCEEEEEEECC------------CCCCCCEEEEECCCCCC-----------------
T ss_conf 7653079999872202686377670699876604------------77788713540366545-----------------
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCC
Q ss_conf 45555567880899927980999926888888532221111245799999999999999940006999972299994799
Q 000454 473 KFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDN 552 (1491)
Q Consensus 473 ~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG 552 (1491)
....+..+.+|++............. .............+..+.|.+++
T Consensus 223 -------------~~~~~~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~w~~~~ 271 (470)
T d2bgra1 223 -------------AVNPTVKFFVVNTDSLSSVTNATSIQ------------------ITAPASMLIGDHYLCDVTWATQE 271 (470)
T ss_dssp -------------SCCCEEEEEEEEGGGCCSSSCCCEEE------------------ECCCHHHHTSCEEEEEEEEEETT
T ss_pred -------------CCCCCCEEEEEECCCCCEEEECCCCC------------------CCCCCCCCCCCCEEEEEEECCCC
T ss_conf -------------46886257999988861455203322------------------47863347898667788876878
Q ss_pred CEEEEEEC-C---C--EEEEEECCCCCEEEEEE-------------CCCCCEEEEEEECCCC-CEEEEEECCCCEEEE--
Q ss_conf 89999954-6---6--39999889994589980-------------7998849999913999-499999589919999--
Q 000454 553 RFVLAAIM-D---C--RICVWNAADGSLVHSLT-------------GHTESTYVLDVHPFNP-RIAMSAGYDGKTIVW-- 610 (1491)
Q Consensus 553 ~~LaSgs~-D---G--~I~IWDl~tgkli~tL~-------------gHs~~VtsIafSPdd~-~lLaSgS~DGtIrIW-- 610 (1491)
..++.... . . .++.+|..++....... .+... ...|.+.+. .+++....||...||
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~ 349 (470)
T d2bgra1 272 RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYF 349 (470)
T ss_dssp EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECCCCC--CCEEEECCCCCEEEEECCCCCCEEEEE
T ss_conf 334787304688159999996188894789998751466214335313577--724542378847987436757645999
Q ss_pred ECCCCCEEEEEEECCCCEEEEEECCCCCEEE-EEECCC----CEEEEEC--CCCCCCCCCCCEEEECCCCCCEEECCCCC
Q ss_conf 6899922899860786468999948999999-995898----1999998--99831246510035608986269816997
Q 000454 611 DIWEGIPIRIYEISRFRLVDGKFSPDGASII-LSDDVG----QLYILNT--GQGESQKDAKYDQFFLGDYRPLVQDTYGN 683 (1491)
Q Consensus 611 Dl~tGk~i~~l~~h~~~VtsIafSPDG~~LA-sgs~DG----~I~IWdl--~tGk~~~~~~~~~~fs~D~r~Li~d~~g~ 683 (1491)
+.. +.....+..+...|..+ ++++++.+. ++..++ .-.||.+ ..+...
T Consensus 350 ~~~-g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~----------------------- 404 (470)
T d2bgra1 350 QID-KKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKV----------------------- 404 (470)
T ss_dssp ETT-CSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCE-----------------------
T ss_pred ECC-CCCEEEECCCCEEEEEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCE-----------------------
T ss_conf 526-87304511698048787-89779999999956899835179999988899860-----------------------
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCEEEEEECCCCCCCEEECCCCCCCC
Q ss_conf 7971132357422379856556677899941001110015400189958998299951888898089312788662
Q 000454 684 VLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADLDV 759 (1491)
Q Consensus 684 vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~S~D~~v~lwp~~~~~~ 759 (1491)
.-+...+ . .+..+...++|||||++++..+.......+.+|...+++.
T Consensus 405 ------------~~lt~~~-----~-----------~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~ 452 (470)
T d2bgra1 405 ------------TCLSCEL-----N-----------PERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKG 452 (470)
T ss_dssp ------------EESSTTT-----S-----------TTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred ------------EEECCCC-----C-----------CCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCE
T ss_conf ------------5703543-----5-----------8889879999998999999983289998199999899989
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=1.9e-18 Score=130.48 Aligned_cols=123 Identities=12% Similarity=-0.100 Sum_probs=70.4
Q ss_pred CCCCEEEEEECCCCCEEEE---EEC--CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CC
Q ss_conf 7987899999689999999---908--97699998788918899706899969999957999999997----------99
Q 000454 242 HRNAVYCAIFDRSGRYVIT---GSD--DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS----------ND 306 (1491)
Q Consensus 242 H~~~VtsIaFSpDGk~LAT---GS~--DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS----------~D 306 (1491)
+.+....++..++++.... ... +..|.+||..+++.+.++.++... .++|+|||+.|++.+ .|
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCC
T ss_conf 679866645589876126972045788621799708998377888578777--513989998899975567640103567
Q ss_pred CEEEEEECCCCCCEEEECCCCC-------CEEEEEECCCCCCEEEEEEE-ECCCCEEEECCCCCCCCCEEE
Q ss_conf 8199997999986033126777-------55999953799950799999-289919997067787654251
Q 000454 307 CIIRVWRLPDGLPISVLRGHTA-------AVTAIAFSPRPGSVYQLLSS-SDDGTCRIWDARYSQFSPRIY 369 (1491)
Q Consensus 307 GtIrIWDl~tgk~i~~L~gHs~-------~VtsIafSPdg~s~~~LiSg-S~DGtIrIWDl~tg~~i~~i~ 369 (1491)
+.|.+||..+++++..+..+.. ....++|+||++ +|+++ ..++.+.+||+.+++....+.
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk---~l~va~~~~~~v~~~d~~~~~~~~~~~ 163 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA---CLLFFLFGSSAAAGLSVPGASDDQLTK 163 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS---CEEEEECSSSCEEEEEETTTEEEEEEE
T ss_pred CEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCC---EEEEEECCCCEEEEEECCCCCEEEEEE
T ss_conf 86999989999383064378542102468864058878998---999996899859999899893867860
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.80 E-value=4.6e-16 Score=115.01 Aligned_cols=361 Identities=9% Similarity=-0.038 Sum_probs=190.7
Q ss_pred CCCCCCEEEEEE-----CCCCCCEEEEEECCCCCEEEEEEC---------CCEEEEEECCCCEEEEEEECCCCCEEEEEE
Q ss_conf 322343058998-----167987899999689999999908---------976999987889188997068999699999
Q 000454 228 TMVQKMQNIKRV-----RGHRNAVYCAIFDRSGRYVITGSD---------DRLVKIWSMETAYCLASCRGHEGDITDLAV 293 (1491)
Q Consensus 228 ~~v~t~k~i~tL-----~GH~~~VtsIaFSpDGk~LATGS~---------DGtIkIWDl~Tg~~l~tL~gH~~~ItsIaf 293 (1491)
+...+.+....+ ..|...|.++.|||||++|+.++. ++.+.|||+.+++. ..+..+...+..+.|
T Consensus 41 ~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~ 119 (470)
T d2bgra1 41 FNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTW 119 (470)
T ss_dssp EETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEE
T ss_pred EECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCCC-CCCCCCCCCCCCCCC
T ss_conf 9889997899970156443167654059989889799997771000104673499998988851-312468742310101
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCCEEEECCC------------------CCCEEEEEECCCCCCEEEEEEEECCCC-E
Q ss_conf 579999999979981999979999860331267------------------775599995379995079999928991-9
Q 000454 294 SSNNALVASASNDCIIRVWRLPDGLPISVLRGH------------------TAAVTAIAFSPRPGSVYQLLSSSDDGT-C 354 (1491)
Q Consensus 294 SPDg~lLASGS~DGtIrIWDl~tgk~i~~L~gH------------------s~~VtsIafSPdg~s~~~LiSgS~DGt-I 354 (1491)
||||+.||... ++.+.+|+..++........+ .+....+.|+||++ +|+....|.. +
T Consensus 120 SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk---~ia~~~~d~~~v 195 (470)
T d2bgra1 120 SPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT---FLAYAQFNDTEV 195 (470)
T ss_dssp CSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS---EEEEEEEECTTC
T ss_pred CCCCCEEEEEE-CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCC---CCCEEEECCCCC
T ss_conf 46764135751-46413798899946532101477740535432011210047765307999987---220268637767
Q ss_pred EEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 99706778765425137999732488878888899999632899987799889993089519998089999989999984
Q 000454 355 RIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNH 434 (1491)
Q Consensus 355 rIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~ 434 (1491)
..|.+...... .........+.+...+. ...+..+.+|++.............
T Consensus 196 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~----~~~~~~~~v~~~~~~~~~~~~~~~~ 248 (470)
T d2bgra1 196 PLIEYSFYSDE-----------------------SLQYPKTVRVPYPKAGA----VNPTVKFFVVNTDSLSSVTNATSIQ 248 (470)
T ss_dssp CEEEEEECCST-----------------------TCSSCEEEEEECCBTTS----CCCEEEEEEEEGGGCCSSSCCCEEE
T ss_pred CEEEEEEECCC-----------------------CCCCCEEEEECCCCCCC----CCCCCEEEEEECCCCCEEEECCCCC
T ss_conf 06998766047-----------------------77887135403665454----6886257999988861455203322
Q ss_pred --EEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC---EEEEEE--CCCCCCCCCC
Q ss_conf --022104888981079982675122233356887888864555556788089992798---099992--6888888532
Q 000454 435 --EIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDG---SAIIWI--PRSRRSHPKA 507 (1491)
Q Consensus 435 --~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DG---tIrIWD--l~s~k~~~~~ 507 (1491)
...........+..+.|.+++. -.+......+ .+.+++ ..++......
T Consensus 249 ~~~~~~~~~~~~~~~~~~w~~~~~-------------------------~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~ 303 (470)
T d2bgra1 249 ITAPASMLIGDHYLCDVTWATQER-------------------------ISLQWLRRIQNYSVMDICDYDESSGRWNCLV 303 (470)
T ss_dssp ECCCHHHHTSCEEEEEEEEEETTE-------------------------EEEEEEESSTTEEEEEEEEEETTTTEEEECG
T ss_pred CCCCCCCCCCCCEEEEEEECCCCC-------------------------EEEEEEECCCCCEEEEEEEECCCCCCEEEEE
T ss_conf 478633478986677888768783-------------------------3478730468815999999618889478999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCE--EEEEECCCCCEEEEEECCCCCE
Q ss_conf 22111124579999999999999994000699997229999479989999954663--9999889994589980799884
Q 000454 508 ARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCR--ICVWNAADGSLVHSLTGHTEST 585 (1491)
Q Consensus 508 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~--I~IWDl~tgkli~tL~gHs~~V 585 (1491)
........ ...-+..+........+..++.+++.+..+|. |++|+...+.. ..+..+...|
T Consensus 304 ~~~~~~~~----------------~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~-~~lt~g~~~v 366 (470)
T d2bgra1 304 ARQHIEMS----------------TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-TFITKGTWEV 366 (470)
T ss_dssp GGCEEEEC----------------SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCC-EESCCSSSCE
T ss_pred EEEEEEEE----------------CCCEEECCCCCCCEEEECCCCCEEEEECCCCCCEEEEEECCCCCE-EEECCCCEEE
T ss_conf 87514662----------------143353135777245423788479874367576459995268730-4511698048
Q ss_pred EEEEEECCCCCEEEEEECCCC------EEEEECCCCCEEEEEE----ECCCCEEEEEECCCCCEEEEEE---CCCCEEEE
Q ss_conf 999991399949999958991------9999689992289986----0786468999948999999995---89819999
Q 000454 586 YVLDVHPFNPRIAMSAGYDGK------TIVWDIWEGIPIRIYE----ISRFRLVDGKFSPDGASIILSD---DVGQLYIL 652 (1491)
Q Consensus 586 tsIafSPdd~~lLaSgS~DGt------IrIWDl~tGk~i~~l~----~h~~~VtsIafSPDG~~LAsgs---~DG~I~IW 652 (1491)
..+ +++++..+++++..++. |.-.++..+.....+. .+...+..++|||||++++... ..-.+.+|
T Consensus 367 ~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~ 445 (470)
T d2bgra1 367 IGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLH 445 (470)
T ss_dssp EEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEE
T ss_pred EEE-EEECCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEE
T ss_conf 787-8977999999995689983517999998889986057035435888987999999899999998328999819999
Q ss_pred ECCCCCCCCCC
Q ss_conf 98998312465
Q 000454 653 NTGQGESQKDA 663 (1491)
Q Consensus 653 dl~tGk~~~~~ 663 (1491)
+..+|+.+..+
T Consensus 446 ~~~~g~~v~~l 456 (470)
T d2bgra1 446 SSVNDKGLRVL 456 (470)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCCEEEEE
T ss_conf 98999899998
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=6.6e-17 Score=120.47 Aligned_cols=278 Identities=10% Similarity=0.012 Sum_probs=164.3
Q ss_pred CCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCEEEEEECCCCEEEEEEECCCC-------CEEEE
Q ss_conf 2234305899816798789999968999999990----------897699998788918899706899-------96999
Q 000454 229 MVQKMQNIKRVRGHRNAVYCAIFDRSGRYVITGS----------DDRLVKIWSMETAYCLASCRGHEG-------DITDL 291 (1491)
Q Consensus 229 ~v~t~k~i~tL~GH~~~VtsIaFSpDGk~LATGS----------~DGtIkIWDl~Tg~~l~tL~gH~~-------~ItsI 291 (1491)
+..+.+.+.++.++... .++|+|||++|++.+ .|+.|.+||..+++++..+..+.. ....+
T Consensus 52 d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~ 129 (368)
T d1mdah_ 52 CAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHII 129 (368)
T ss_dssp ETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSE
T ss_pred ECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCE
T ss_conf 08998377888578777--5139899988999755676401035678699998999938306437854210246886405
Q ss_pred EECCCCCEEEEEE-CCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEEC
Q ss_conf 9957999999997-998199997999986033126777559999537999507999992899199970677876542513
Q 000454 292 AVSSNNALVASAS-NDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYI 370 (1491)
Q Consensus 292 afSPDg~lLASGS-~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~ 370 (1491)
+|+|||++|+++. .++.|.+||+.+++.+..+..+.... +.+.+. ..++..+.||.+.+|++...........
T Consensus 130 a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~--~~~v~~~~Dg~~~~~~~~~~~~~~~~~~ 203 (368)
T d1mdah_ 130 GNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHPGAA--ATHYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp EECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEEEET--TEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCE----ECCCCC--CEEEEECCCCCEEEEEECCCCEEEEEEE
T ss_conf 8878998999996899859999899893867860467523----746998--2399994899889998268962666530
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEE
Q ss_conf 79997324888788888999996328999877998899930895199980899999899999840221048889810799
Q 000454 371 PRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQ 450 (1491)
Q Consensus 371 ~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIa 450 (1491)
. .....+...+....+.+++..+... .+.+.+++..... .........+........
T Consensus 204 ~--------------~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 260 (368)
T d1mdah_ 204 A--------------QCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAG-------ATMKAAIDGNESGRKADN 260 (368)
T ss_dssp C--------------CSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSC-------CEEECCCCSSCTHHHHTT
T ss_pred C--------------CCCCCCCCCEEECCCCCCCEEEEEC--CCCEEEEEECCCC-------EEEEEECCCCCCEEEEEE
T ss_conf 3--------------1113566646601015586899934--8977999606993-------699760246543045540
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 82675122233356887888864555556788089992798099992688888853222111124579999999999999
Q 000454 451 FSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRG 530 (1491)
Q Consensus 451 fSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 530 (1491)
|.
T Consensus 261 ~~------------------------------------------------------------------------------ 262 (368)
T d1mdah_ 261 FR------------------------------------------------------------------------------ 262 (368)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred EC------------------------------------------------------------------------------
T ss_conf 12------------------------------------------------------------------------------
Q ss_pred CCCEECCCCCCCEEEEEECCCCCEEEEEECC---------CEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCC-EEEE
Q ss_conf 9940006999972299994799899999546---------63999988999458998079988499999139994-9999
Q 000454 531 GPRQRILPTPRGVNMIVWSLDNRFVLAAIMD---------CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPR-IAMS 600 (1491)
Q Consensus 531 ~~~~~l~~h~~~VtsIafSPDG~~LaSgs~D---------G~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~-lLaS 600 (1491)
......+++++++..+++...+ ..|.+||..+++.+..+.. ...+..++|+|++.. ++++
T Consensus 263 ---------~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s 332 (368)
T d1mdah_ 263 ---------SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp ---------ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEE
T ss_pred ---------CCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCEEEEEE
T ss_conf ---------78835688717998799983589733405886499998999948689558-99651799998999899999
Q ss_pred EECCCCEEEEECCCCCEEEEEEECC
Q ss_conf 9589919999689992289986078
Q 000454 601 AGYDGKTIVWDIWEGIPIRIYEISR 625 (1491)
Q Consensus 601 gS~DGtIrIWDl~tGk~i~~l~~h~ 625 (1491)
+..|+.|.+||..+++.+..+..+.
T Consensus 333 ~~~~~~v~v~D~~tgk~~~~i~~g~ 357 (368)
T d1mdah_ 333 SAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp ETTTTEEEEEESSSCEEEEECCCCS
T ss_pred ECCCCEEEEEECCCCCEEEEEECCC
T ss_conf 4899969999899997999987999
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.72 E-value=3.2e-17 Score=122.47 Aligned_cols=357 Identities=10% Similarity=-0.007 Sum_probs=183.3
Q ss_pred EEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECC
Q ss_conf 99990897699998788918899706899969999957999999997998199997999986033126777559999537
Q 000454 258 VITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSP 337 (1491)
Q Consensus 258 LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSP 337 (1491)
+++++.+|.|.||++.+++.++++.- |+|++.. ..|..+.+.+++. ..........|...+....+.|
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpV---------fspd~~~-g~g~~~es~~vl~--~~~~~~~gd~hhP~~s~t~gtp 81 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSAT-GWGITNESKEILG--GDQQYLNGDCHHPHISMTDGRY 81 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECS---------SSBCTTT-CTTTSHHHHHHHC--SSSCCSCCCBCCCEEEEETTEE
T ss_pred EEECCCCCCEEEEECCCCCEEEEEEE---------ECCCCCE-EEEECCCCCEEEE--CCCCCCCCCCCCCCCCEECCCC
T ss_conf 99688777489996789807999976---------7578987-9998886504783--1332256755677722103268
Q ss_pred CCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC--EEEEECCCCE
Q ss_conf 99950799999289919997067787654251379997324888788888999996328999877998--8999308951
Q 000454 338 RPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGT--VFVTGSSDTL 415 (1491)
Q Consensus 338 dg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~--~LasGs~DG~ 415 (1491)
||+ +.++....+..|.+||+.+.+....+.++ ....+..++|+|+|+ +++..+.+..
T Consensus 82 DGr--~lfV~d~~~~rVavIDl~t~k~~~ii~iP-------------------~g~gphgi~~spdg~t~YV~~~~~~~v 140 (441)
T d1qnia2 82 DGK--YLFINDKANTRVARIRLDIMKTDKITHIP-------------------NVQAIHGLRLQKVPKTNYVFCNAEFVI 140 (441)
T ss_dssp EEE--EEEEEETTTTEEEEEETTTTEEEEEEECT-------------------TCCCEEEEEECCSSBCCEEEEEECSCE
T ss_pred CCC--EEEEECCCCCEEEEEECCCCCEEEEEECC-------------------CCCCCCCEEEECCCCEEEEEECCCCCC
T ss_conf 888--89997389997999988778475579567-------------------887864348705699899995667754
Q ss_pred -----------------EEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----------------999808999998999998402210488898107998267512223335688788886455555
Q 000454 416 -----------------ARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW 478 (1491)
Q Consensus 416 -----------------IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~ 478 (1491)
+..+|..+ ......+.. ......+.|+|++
T Consensus 141 ~~~~dg~~~~~~~~~~~~~~iD~~t---------~~v~~qI~v-~~~p~~v~~spdG----------------------- 187 (441)
T d1qnia2 141 PQPNDGTDFSLDNSYTMFTAIDAET---------MDVAWQVIV-DGNLDNTDADYTG----------------------- 187 (441)
T ss_dssp ESSCSSSCCCGGGEEEEEEEEETTT---------CSEEEEEEE-SSCCCCEEECSSS-----------------------
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCC---------CEEEEEEEC-CCCCCCEEECCCC-----------------------
T ss_conf 4367663001455532388663755---------606478736-9986546987999-----------------------
Q ss_pred CCCCEEEEEECC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEE
Q ss_conf 678808999279-8099992688888853222111124579999999999999994000699997229999479989999
Q 000454 479 FCHDNIVTCSRD-GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLA 557 (1491)
Q Consensus 479 ~~~~~LvSgS~D-GtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaS 557 (1491)
.++++.+.+ ..+..++..+...... .........++++++|+++.+
T Consensus 188 ---k~a~vt~~nse~~~~id~~t~~~~d~------------------------------i~v~n~p~~~~~~~dGk~~~v 234 (441)
T d1qnia2 188 ---KYATSTCYNSERAVDLAGTMRNDRDW------------------------------VVVFNVERIAAAVKAGNFKTI 234 (441)
T ss_dssp ---SEEEEEESCTTCCSSHHHHTCSSBCE------------------------------EEEEEHHHHHHHHHTTCCBCC
T ss_pred ---CEEEEEECCCCCEEEEECCCCCEEEE------------------------------EEECCCCCEEEEECCCCEEEE
T ss_conf ---98999851787318985157121789------------------------------996885110799669999996
Q ss_pred EECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCE--------EEEEEE---CCC
Q ss_conf 954663999988999458998079988499999139994999995899199996899922--------899860---786
Q 000454 558 AIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP--------IRIYEI---SRF 626 (1491)
Q Consensus 558 gs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~--------i~~l~~---h~~ 626 (1491)
+ .++.+.|++......+..+.....+ ..+.++|++..+++++..+++|.+||+.+... ...+.. ..-
T Consensus 235 ~-~~~v~vvd~~~~~~v~~~IPvgksP-hGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl 312 (441)
T d1qnia2 235 G-DSKVPVVDGRGESEFTRYIPVPKNP-HGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL 312 (441)
T ss_dssp T-TCCCCEEECSSSCSSEEEECCBSSC-CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS
T ss_pred C-CCCCEEEECCCCCCEEEEEECCCCC-CCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 9-9982899803687068997179886-6726899987899907759938999832244575256884247996014554
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 46899994899999999589819999989983124651003560898626981699779711323574223798565566
Q 000454 627 RLVDGKFSPDGASIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLVQDTYGNVLDQETQLAPHRRNLQDPLCDSA 706 (1491)
Q Consensus 627 ~VtsIafSPDG~~LAsgs~DG~I~IWdl~tGk~~~~~~~~~~fs~D~r~Li~d~~g~vLde~tq~~p~Lw~l~~~l~d~s 706 (1491)
......|.++|..+.+...|..|..|+++.... .|..+. -..+++ .+++
T Consensus 313 gplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~--------~~~~~~-------~~~v~~--------~~~v-------- 361 (441)
T d1qnia2 313 GPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIK--------HYNGDR-------VNYIRQ--------KLDV-------- 361 (441)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHH--------HHTTCC-------CCCEEE--------EEEC--------
T ss_pred CCCCCEECCCCEEEECCCCCCEEEEECCCHHHH--------HHCCCC-------CCEEEE--------CCCC--------
T ss_conf 766522657855998524431689723542213--------322677-------765686--------4532--------
Q ss_pred CCCCCCCCHHHHHHCCCCCCCEEECCCCCEEEEEECCCCCCCEEECCCC
Q ss_conf 7789994100111001540018995899829995188889808931278
Q 000454 707 MIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLA 755 (1491)
Q Consensus 707 ~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~S~D~~v~lwp~~ 755 (1491)
. || +++...+.+..++|||++|+.++-++.|+...+-|+.
T Consensus 362 --~----y~---~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~ 401 (441)
T d1qnia2 362 --Q----YQ---PGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLH 401 (441)
T ss_dssp --S----SC---EEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSC
T ss_pred --C----CC---CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf --6----68---9877524542238988489965744425576788898
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.68 E-value=5.3e-17 Score=121.11 Aligned_cols=298 Identities=11% Similarity=0.047 Sum_probs=151.9
Q ss_pred CCCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCCCEEEEEEE-CCCCCEEEEEECCCCC--EEEEEECCCEEEEEECC
Q ss_conf 1679878999996899999999-089769999878891889970-6899969999957999--99999799819999799
Q 000454 240 RGHRNAVYCAIFDRSGRYVITG-SDDRLVKIWSMETAYCLASCR-GHEGDITDLAVSSNNA--LVASASNDCIIRVWRLP 315 (1491)
Q Consensus 240 ~GH~~~VtsIaFSpDGk~LATG-S~DGtIkIWDl~Tg~~l~tL~-gH~~~ItsIafSPDg~--lLASGS~DGtIrIWDl~ 315 (1491)
..|.-.+.+..++|||++|+.. ..+..|.+||+.++++...+. .+...+..++|+|+++ |++..+.+. +.+ ..
T Consensus 68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~-v~~--~~ 144 (441)
T d1qnia2 68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFV-IPQ--PN 144 (441)
T ss_dssp CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSC-EES--SC
T ss_pred CCCCCCCCEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCC-CCC--CC
T ss_conf 556777221032688888999738999799998877847557956788786434870569989999566775-443--67
Q ss_pred CCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 99860331267775599995379995079999928991999706778765425137999732488878888899999632
Q 000454 316 DGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1491)
Q Consensus 316 tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V 395 (1491)
.+..+.. +. .. ..+..+|..+.....++.. ...+
T Consensus 145 dg~~~~~---------------~~----~~------~~~~~iD~~t~~v~~qI~v---------------------~~~p 178 (441)
T d1qnia2 145 DGTDFSL---------------DN----SY------TMFTAIDAETMDVAWQVIV---------------------DGNL 178 (441)
T ss_dssp SSSCCCG---------------GG----EE------EEEEEEETTTCSEEEEEEE---------------------SSCC
T ss_pred CCCCCCC---------------CC----CC------CEEEEECCCCCEEEEEEEC---------------------CCCC
T ss_conf 6630014---------------55----53------2388663755606478736---------------------9986
Q ss_pred EEEEECCCCCEEEEECCCC-EEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8999877998899930895-199980899999899999840221048889810799826751222333568878888645
Q 000454 396 FCCAFNANGTVFVTGSSDT-LARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKF 474 (1491)
Q Consensus 396 ~sIafSPDG~~LasGs~DG-~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~ 474 (1491)
..+.|+|+|+++++.+.+. .+..++..+. .....+... ..-..+.+.+++
T Consensus 179 ~~v~~spdGk~a~vt~~nse~~~~id~~t~---------~~~d~i~v~-n~p~~~~~~~dG------------------- 229 (441)
T d1qnia2 179 DNTDADYTGKYATSTCYNSERAVDLAGTMR---------NDRDWVVVF-NVERIAAAVKAG------------------- 229 (441)
T ss_dssp CCEEECSSSSEEEEEESCTTCCSSHHHHTC---------SSBCEEEEE-EHHHHHHHHHTT-------------------
T ss_pred CCEEECCCCCEEEEEECCCCCEEEEECCCC---------CEEEEEEEC-CCCCEEEEECCC-------------------
T ss_conf 546987999989998517873189851571---------217899968-851107996699-------------------
Q ss_pred CCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCE
Q ss_conf 55556788089992798099992688888853222111124579999999999999994000699997229999479989
Q 000454 475 KNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRF 554 (1491)
Q Consensus 475 ~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~ 554 (1491)
.++..+.++.+.+++.... ......+.......+.++|||++
T Consensus 230 --------k~~~v~~~~v~vvd~~~~~------------------------------~v~~~IPvgksPhGv~vSPDGky 271 (441)
T d1qnia2 230 --------NFKTIGDSKVPVVDGRGES------------------------------EFTRYIPVPKNPHGLNTSPDGKY 271 (441)
T ss_dssp --------CCBCCTTCCCCEEECSSSC------------------------------SSEEEECCBSSCCCEEECTTSCE
T ss_pred --------CEEEECCCCCEEEECCCCC------------------------------CEEEEEECCCCCCCCEECCCCCE
T ss_conf --------9999699982899803687------------------------------06899717988667268999878
Q ss_pred EEE-EECCCEEEEEECCCCCE--------EEEEECCC---CCEEEEEEECCCCCEEEEEECCCCEEEEECCC--------
Q ss_conf 999-95466399998899945--------89980799---88499999139994999995899199996899--------
Q 000454 555 VLA-AIMDCRICVWNAADGSL--------VHSLTGHT---ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE-------- 614 (1491)
Q Consensus 555 LaS-gs~DG~I~IWDl~tgkl--------i~tL~gHs---~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~t-------- 614 (1491)
+++ +..+++|.|||+.+... ...+.++. -.....+|.+ .+..+.+...|..|..|++..
T Consensus 272 l~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~ 350 (441)
T d1qnia2 272 FIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGD 350 (441)
T ss_dssp EEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTC
T ss_pred EEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECC-CCEEEECCCCCCEEEEECCCHHHHHHCCC
T ss_conf 99907759938999832244575256884247996014554766522657-85599852443168972354221332267
Q ss_pred -C-CEEEEE-----EECCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf -9-228998-----607864689999489999999958981999998
Q 000454 615 -G-IPIRIY-----EISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 615 -G-k~i~~l-----~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
. ..+..+ .+|...+....|+|||+||++++.-..=+++.+
T Consensus 351 ~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~ 397 (441)
T d1qnia2 351 RVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPV 397 (441)
T ss_dssp CCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCC
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 77656864532668987752454223898848996574442557678
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=5.8e-10 Score=75.62 Aligned_cols=169 Identities=11% Similarity=0.053 Sum_probs=84.8
Q ss_pred CCEEEEEECCCCCEEEEEEC----CCEEEEEECCCCCEEEEEECCC-CCE----EEEEEECCCCCEEEE-EE-CCC--CE
Q ss_conf 97229999479989999954----6639999889994589980799-884----999991399949999-95-899--19
Q 000454 541 RGVNMIVWSLDNRFVLAAIM----DCRICVWNAADGSLVHSLTGHT-EST----YVLDVHPFNPRIAMS-AG-YDG--KT 607 (1491)
Q Consensus 541 ~~VtsIafSPDG~~LaSgs~----DG~I~IWDl~tgkli~tL~gHs-~~V----tsIafSPdd~~lLaS-gS-~DG--tI 607 (1491)
..+..+.|++++++++.... ...|.++|..++++...+.... ..| ....|+|++..+++. .+ .+| .+
T Consensus 255 ~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~l 334 (465)
T d1xfda1 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF 334 (465)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred CEEEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEEEEEEEEEECCCCCE
T ss_conf 30456687579938999974100301379970799927877897278517356786057468980577776543166716
Q ss_pred EEEEC------CCCCEEEEEEECCCCEEEE-EECCCCCEEEE-EECC--CCEEEEECCCCCCCCCCCCEEEECCCCCCEE
Q ss_conf 99968------9992289986078646899-99489999999-9589--8199999899831246510035608986269
Q 000454 608 IVWDI------WEGIPIRIYEISRFRLVDG-KFSPDGASIIL-SDDV--GQLYILNTGQGESQKDAKYDQFFLGDYRPLV 677 (1491)
Q Consensus 608 rIWDl------~tGk~i~~l~~h~~~VtsI-afSPDG~~LAs-gs~D--G~I~IWdl~tGk~~~~~~~~~~fs~D~r~Li 677 (1491)
....+ ..+..+..+..+...|..+ .|..++..|.. +..+ +.-++|.+.
T Consensus 335 y~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~---------------------- 392 (465)
T d1xfda1 335 YHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN---------------------- 392 (465)
T ss_dssp EEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC----------------------
T ss_pred EEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEE----------------------
T ss_conf 8998315666678862698226992199778983899999999968999826899997----------------------
Q ss_pred ECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCEEEEEECCCCCCCEEECCCCCC
Q ss_conf 81699779711323574223798565566778999410011100154001899589982999518888980893127886
Q 000454 678 QDTYGNVLDQETQLAPHRRNLQDPLCDSAMIPYPEPYQTMYQQRRLGALGIEWRPSSLKLAVGPDFSLDQGYQLQPLADL 757 (1491)
Q Consensus 678 ~d~~g~vLde~tq~~p~Lw~l~~~l~d~s~~p~p~~~q~l~q~~~~~vl~lafSPDG~~LAvg~d~S~D~~v~lwp~~~~ 757 (1491)
..|.... . +. .|+.. ...+...+.|||+|.+++..+.......+.++...++
T Consensus 393 --l~g~~~~-~------~l-----t~~~~--------------~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~ 444 (465)
T d1xfda1 393 --TVGNFNR-Q------CL-----SCDLV--------------ENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDK 444 (465)
T ss_dssp --SSTTCCC-B------CS-----STTSS--------------SSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTC
T ss_pred --CCCCCCC-E------EE-----CCCCC--------------CCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCC
T ss_conf --7899860-5------53-----14467--------------8898799999999999999800699984999999999
Q ss_pred CC
Q ss_conf 62
Q 000454 758 DV 759 (1491)
Q Consensus 758 ~~ 759 (1491)
+.
T Consensus 445 ~~ 446 (465)
T d1xfda1 445 KK 446 (465)
T ss_dssp CE
T ss_pred CE
T ss_conf 79
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.44 E-value=2.6e-09 Score=71.43 Aligned_cols=124 Identities=18% Similarity=0.080 Sum_probs=77.8
Q ss_pred CCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 43058998167987899999689999999908976999987889188997068999699999579999999979981999
Q 000454 232 KMQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRV 311 (1491)
Q Consensus 232 t~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrI 311 (1491)
..+.+.++.... .+..++++|||+++++...+++|..|+.. +.. ..+......+.+++|+++|+++++...++.+.+
T Consensus 17 ~~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~ 93 (302)
T d2p4oa1 17 PAKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPV 93 (302)
T ss_dssp CEEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCCEEEECCCCC-CCCCEEECCCCCEEEEECCCCEEEEEECC-CCE-EEEECCCCCCCEEEECCCCCEEEEECCCCEEEE
T ss_conf 620788888998-84787799998899996889989999089-988-999717998536898677886998328953788
Q ss_pred EECCCCCCE-EEE--CCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCC
Q ss_conf 979999860-331--26777559999537999507999992899199970677
Q 000454 312 WRLPDGLPI-SVL--RGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARY 361 (1491)
Q Consensus 312 WDl~tgk~i-~~L--~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~t 361 (1491)
|+....... ..+ .........+++.+++. ++++.+.++.+..++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~---~~v~~~~~~~i~~~~~~~ 143 (302)
T d2p4oa1 94 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ---YLTADSYRGAIWLIDVVQ 143 (302)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSSE---EEEEETTTTEEEEEETTT
T ss_pred EEECCCCCCEEECCCCCCCCCCCEEEECCCCC---EEEECCCCCCCEEEECCC
T ss_conf 87101111012102357863221667715797---875035655410242168
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.44 E-value=6.3e-10 Score=75.38 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=12.5
Q ss_pred EEEEEECCCCCEEEEECC-CCEEEEEEC
Q ss_conf 289998779988999308-951999808
Q 000454 395 IFCCAFNANGTVFVTGSS-DTLARVWNA 421 (1491)
Q Consensus 395 V~sIafSPDG~~LasGs~-DG~IrIWDl 421 (1491)
+.++.|+|+|+++++... ...|.+|+.
T Consensus 147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~ 174 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSADLTANKLWTHRK 174 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCCEEEEEEC
T ss_conf 1597888999989982079987999970
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.37 E-value=5.4e-09 Score=69.36 Aligned_cols=66 Identities=12% Similarity=-0.002 Sum_probs=23.6
Q ss_pred EEEEECCCCCEEEEE-ECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 999996899999999-089769999878891889970689996999995799999999799819999
Q 000454 247 YCAIFDRSGRYVITG-SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 247 tsIaFSpDGk~LATG-S~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIW 312 (1491)
..|+++++|.+.++. +..+.|..++...................+++++++.++++....+.++++
T Consensus 17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~ 83 (260)
T d1rwia_ 17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLA 83 (260)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEEC
T ss_pred CEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECEEEEE
T ss_conf 8899969999999971899889999389966897436986684089993899889863100003554
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=1.2e-08 Score=67.09 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=39.4
Q ss_pred EEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCCEEEECCCCCCEEEEEECCCCC
Q ss_conf 699998788918899706899969999957999999997998---199997999986033126777559999537999
Q 000454 266 LVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDC---IIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPG 340 (1491)
Q Consensus 266 tIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DG---tIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~ 340 (1491)
.|.|-|.. |.....+..+...+...+|||||+.||...... .+.+.+...+.. ..+..+.+.+....|+|++.
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~ 95 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGS 95 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSS
T ss_pred EEEEECCC-CCCCEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCE-EEEEEEECCCCCCEECCCCC
T ss_conf 99999289-997679865898426038878999899998152675134431136750-67764202454302448898
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.35 E-value=5e-09 Score=69.58 Aligned_cols=111 Identities=12% Similarity=0.144 Sum_probs=64.6
Q ss_pred EEEEECCCCC-----EEEEEECCCEEEEEECCCCCEEE------EEEC-CCCCEEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 2999947998-----99999546639999889994589------9807-9988499999139994999995899199996
Q 000454 544 NMIVWSLDNR-----FVLAAIMDCRICVWNAADGSLVH------SLTG-HTESTYVLDVHPFNPRIAMSAGYDGKTIVWD 611 (1491)
Q Consensus 544 tsIafSPDG~-----~LaSgs~DG~I~IWDl~tgkli~------tL~g-Hs~~VtsIafSPdd~~lLaSgS~DGtIrIWD 611 (1491)
+.++|++++. ++++-+..+.|+.|++.....+. .+.+ .....-.+++.. ++++.++....+.|.+|+
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I~~~d 253 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFG 253 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEEC
T ss_pred EEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEC-CCCEEEEECCCCEEEEEE
T ss_conf 1369978877630379998602431177611676543015689971335666410257834-785799982799999996
Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCCCEEEEE-ECCCCEEEEECC
Q ss_conf 89992289986078646899994899999999-589819999989
Q 000454 612 IWEGIPIRIYEISRFRLVDGKFSPDGASIILS-DDVGQLYILNTG 655 (1491)
Q Consensus 612 l~tGk~i~~l~~h~~~VtsIafSPDG~~LAsg-s~DG~I~IWdl~ 655 (1491)
...+..+..+......+++++|.||++.|.++ ...|.|+.+++.
T Consensus 254 p~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 254 PDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf 999979999979999878999928989999998789919999789
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.34 E-value=1.4e-08 Score=66.71 Aligned_cols=127 Identities=9% Similarity=0.025 Sum_probs=84.0
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCC
Q ss_conf 88918899706899969999957999999997998199997999986033126777559999537999507999992899
Q 000454 273 ETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDG 352 (1491)
Q Consensus 273 ~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DG 352 (1491)
...+.+..+.. ...+..++++|||+++++...++.|..|+.. +. ...+......+.+++|.+++. ++++...++
T Consensus 16 ~~~~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~---l~v~~~~~~ 89 (302)
T d2p4oa1 16 APAKIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGD---LVATGWNAD 89 (302)
T ss_dssp CCEEEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSC---EEEEEECTT
T ss_pred CCCCEEEECCC-CCCCCCEEECCCCCEEEEECCCCEEEEEECC-CC-EEEEECCCCCCCEEEECCCCC---EEEEECCCC
T ss_conf 86207888889-9884787799998899996889989999089-98-899971799853689867788---699832895
Q ss_pred CEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECC
Q ss_conf 1999706778765425137999732488878888899999632899987799889993089519998089
Q 000454 353 TCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNAC 422 (1491)
Q Consensus 353 tIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~ 422 (1491)
.+..|+............. .........+++.++|.++++...++.+..++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~ 142 (302)
T d2p4oa1 90 SIPVVSLVKSDGTVETLLT-----------------LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV 142 (302)
T ss_dssp SCEEEEEECTTSCEEEEEE-----------------CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCCCEEECCC-----------------CCCCCCCCEEEECCCCCEEEECCCCCCCEEEECC
T ss_conf 3788871011110121023-----------------5786322166771579787503565541024216
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.33 E-value=1.6e-08 Score=66.22 Aligned_cols=110 Identities=5% Similarity=-0.010 Sum_probs=60.4
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE
Q ss_conf 22999947998999995466399998899945899807998849999913999499999589919999689992289986
Q 000454 543 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYE 622 (1491)
Q Consensus 543 VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~ 622 (1491)
...++++++|+++++...++.|..++...................|++.+ ++.++++....+.|..++..... ...+.
T Consensus 142 p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~-~~~~~ 219 (260)
T d1rwia_ 142 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTT-STVLP 219 (260)
T ss_dssp CCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSC-CEECC
T ss_pred CCEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEE-EEEEEEEECCCCEEEEEECCCCE-EEEEC
T ss_conf 52054548998864102564332223431001222101147876312310-00134321489989999699976-99970
Q ss_pred -ECCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf -07864689999489999999958981999998
Q 000454 623 -ISRFRLVDGKFSPDGASIILSDDVGQLYILNT 654 (1491)
Q Consensus 623 -~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl 654 (1491)
..-.....++++++|.++++-..++.|+.++.
T Consensus 220 ~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred CCCCCCEEEEEEECCCCEEEEECCCCEEEEEEC
T ss_conf 699898179999089999999799998999959
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.4e-08 Score=66.70 Aligned_cols=332 Identities=11% Similarity=0.016 Sum_probs=164.1
Q ss_pred CCEEEEEECCCCCEEEEEE---------CCCEEEEEECCCCEEEEEEE--CCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 8789999968999999990---------89769999878891889970--689996999995799999999799819999
Q 000454 244 NAVYCAIFDRSGRYVITGS---------DDRLVKIWSMETAYCLASCR--GHEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 244 ~~VtsIaFSpDGk~LATGS---------~DGtIkIWDl~Tg~~l~tL~--gH~~~ItsIafSPDg~lLASGS~DGtIrIW 312 (1491)
-.+....|||||++|+... ..+.+.|+|+.++....... .....+....|||||+.||... ++.|.+.
T Consensus 61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~ 139 (465)
T d1xfda1 61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC 139 (465)
T ss_dssp TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred CCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCCEEECCCCCCCCCCCCEEEECCCCCEEEEEE-CCEEEEE
T ss_conf 553213898988869999845100476033528999856884564157667764311002426785699996-1329999
Q ss_pred ECCCCCCEEEECC-CCCC-----------------EEEEEECCCCCCEEEEEEEE-CCCCEEEECCCCCCCCCEEECCCC
Q ss_conf 7999986033126-7775-----------------59999537999507999992-899199970677876542513799
Q 000454 313 RLPDGLPISVLRG-HTAA-----------------VTAIAFSPRPGSVYQLLSSS-DDGTCRIWDARYSQFSPRIYIPRP 373 (1491)
Q Consensus 313 Dl~tgk~i~~L~g-Hs~~-----------------VtsIafSPdg~s~~~LiSgS-~DGtIrIWDl~tg~~i~~i~~~~~ 373 (1491)
+...+..++.... ..+. -.++-|+||++ +|+... .+..|..+.+.....
T Consensus 140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk---~iaf~~~D~s~V~~~~~~~~~~--------- 207 (465)
T d1xfda1 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT---RLAYAAINDSRVPIMELPTYTG--------- 207 (465)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS---EEEEEEEECTTSCEEEECCCSS---------
T ss_pred ECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCCCCEEEECCCCC---EEEEEEECCCCCCEEECCCCCC---------
T ss_conf 5489965897112676604436643100123036643489779898---6899995366661464123445---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECC
Q ss_conf 97324888788888999996328999877998899930895199980899999899999840221048889810799826
Q 000454 374 SDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSG 453 (1491)
Q Consensus 374 ~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSp 453 (1491)
.....+..+.+..-|... ....+.++++..+.......+ ..........+..+.|.+
T Consensus 208 ----------------~~~p~~~~~~Yp~~G~~n----p~~~l~v~d~~~~~~~~~~~~---~~~~~~~~~y~~~~~W~~ 264 (465)
T d1xfda1 208 ----------------SIYPTVKPYHYPKAGSEN----PSISLHVIGLNGPTHDLEMMP---PDDPRMREYYITMVKWAT 264 (465)
T ss_dssp ----------------SSSCCCEEEECCBTTSCC----CEEEEEEEESSSSCCCEECCC---CCCGGGSSEEEEEEEESS
T ss_pred ----------------CCCCEEEEEECCCCCCCC----CCEEEEEEECCCCCEEEEEEC---CCCCCCCCCEEEEEEECC
T ss_conf ----------------444313345302568889----721379983689817899952---576766663045668757
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-EEECC---CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 75122233356887888864555556788089-99279---809999268888885322211112457999999999999
Q 000454 454 CAVASRFSLADSSKEDSTPKFKNSWFCHDNIV-TCSRD---GSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPR 529 (1491)
Q Consensus 454 dg~as~~s~~~~~~~~~~~~~~~~~~~~~~Lv-SgS~D---GtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~ 529 (1491)
++ ..++ ....+ ..+.++|..+++.......-...+
T Consensus 265 d~--------------------------~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~w--------------- 303 (465)
T d1xfda1 265 ST--------------------------KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAW--------------- 303 (465)
T ss_dssp SS--------------------------EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSC---------------
T ss_pred CC--------------------------EEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCE---------------
T ss_conf 99--------------------------3899997410030137997079992787789727851---------------
Q ss_pred CCCCEECCCCCCCEEEEEECCCCCEEEE---EECCC--EEEEEECC------CCCEEEEEECCCCCEEEE-EEECCCCCE
Q ss_conf 9994000699997229999479989999---95466--39999889------994589980799884999-991399949
Q 000454 530 GGPRQRILPTPRGVNMIVWSLDNRFVLA---AIMDC--RICVWNAA------DGSLVHSLTGHTESTYVL-DVHPFNPRI 597 (1491)
Q Consensus 530 ~~~~~~l~~h~~~VtsIafSPDG~~LaS---gs~DG--~I~IWDl~------tgkli~tL~gHs~~VtsI-afSPdd~~l 597 (1491)
. ........|++||+.++. .-.+| .++...+. .+..+..+....-.|..+ .|...+..+
T Consensus 304 -------v--~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~v 374 (465)
T d1xfda1 304 -------L--HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKI 374 (465)
T ss_dssp -------C--CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEE
T ss_pred -------E--ECCCCCEEECCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEE
T ss_conf -------7--3567860574689805777765431667168998315666678862698226992199778983899999
Q ss_pred EEEEECCC--CEEEEE--CCCCCEEEEEE---ECCCCEEEEEECCCCCEEEEEECC---CCEEEEECCCCCCCC
Q ss_conf 99995899--199996--89992289986---078646899994899999999589---819999989983124
Q 000454 598 AMSAGYDG--KTIVWD--IWEGIPIRIYE---ISRFRLVDGKFSPDGASIILSDDV---GQLYILNTGQGESQK 661 (1491)
Q Consensus 598 LaSgS~DG--tIrIWD--l~tGk~i~~l~---~h~~~VtsIafSPDG~~LAsgs~D---G~I~IWdl~tGk~~~ 661 (1491)
.+++..++ .-.+|. +..+.....+. ........+.|||+|++++..... -.+.+++..+++.+.
T Consensus 375 yF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~ 448 (465)
T d1xfda1 375 YFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMF 448 (465)
T ss_dssp EEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEE
T ss_pred EEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 99996899982689999778998605531446788987999999999999998006999849999999997999
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=6.9e-08 Score=62.19 Aligned_cols=66 Identities=11% Similarity=0.039 Sum_probs=27.7
Q ss_pred EECCCCCCEEEEEECCCCCEEEEEECC---CEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 981679878999996899999999089---7699998788918899706899969999957999999997
Q 000454 238 RVRGHRNAVYCAIFDRSGRYVITGSDD---RLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASAS 304 (1491)
Q Consensus 238 tL~GH~~~VtsIaFSpDGk~LATGS~D---GtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS 304 (1491)
.+..+...+...+|||||++||..... ..+.+.+...+... .+..+...+....|+|++..++...
T Consensus 33 ~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~ 101 (269)
T d2hqsa1 33 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFAL 101 (269)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEE-EEEEEECCCCCCEECCCCCEEEEEE
T ss_conf 98658984260388789998999981526751344311367506-7764202454302448898646764
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.21 E-value=7.4e-08 Score=61.99 Aligned_cols=266 Identities=12% Similarity=0.083 Sum_probs=144.2
Q ss_pred CCEEEEEECCCCCEEEEEEC-------CCEEEEEECCCCEEEEEEEC----CCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 87899999689999999908-------97699998788918899706----89996999995799999999799819999
Q 000454 244 NAVYCAIFDRSGRYVITGSD-------DRLVKIWSMETAYCLASCRG----HEGDITDLAVSSNNALVASASNDCIIRVW 312 (1491)
Q Consensus 244 ~~VtsIaFSpDGk~LATGS~-------DGtIkIWDl~Tg~~l~tL~g----H~~~ItsIafSPDg~lLASGS~DGtIrIW 312 (1491)
...-.++|+++|+++++... ++.|..|+..++........ ..+.-..++|.++++.|+++.....|...
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEE
T ss_conf 89717399699999999875402345299999998999959999777655678853069990799989999779839999
Q ss_pred ECCCCCCEEEECCCC----CCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 799998603312677----7559999537999507999992899199970677876542513799973248887888889
Q 000454 313 RLPDGLPISVLRGHT----AAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSA 388 (1491)
Q Consensus 313 Dl~tgk~i~~L~gHs----~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~ 388 (1491)
+.............. .....++|.+++. +.++ ...+.+..|+.....
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~---lyvt-d~~~~~~~~~~~~~~------------------------- 148 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN---LWIT-APAGEVAPADYTRSM------------------------- 148 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSC---EEEE-ECBCBCTTSCCCBTT-------------------------
T ss_pred ECCCCEEEEEECCCCCCCCCCCCEEEECCCCC---EEEE-CCCCCCCCCCCCCEE-------------------------
T ss_conf 47774799973343245457872789888998---9991-486675432011000-------------------------
Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99996328999877998899930895199980899999899999840221048889810799826751222333568878
Q 000454 389 GPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKE 468 (1491)
Q Consensus 389 ~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~ 468 (1491)
....+.+ ..+.++|...... .....-+.++|++++....
T Consensus 149 ~~~~G~v--~~~~~dg~~~~~~------------------------------~~~~~pNGi~~~~d~d~~~--------- 187 (314)
T d1pjxa_ 149 QEKFGSI--YCFTTDGQMIQVD------------------------------TAFQFPNGIAVRHMNDGRP--------- 187 (314)
T ss_dssp SSSCEEE--EEECTTSCEEEEE------------------------------EEESSEEEEEEEECTTSCE---------
T ss_pred CCCCCEE--EEEEECCCEEEEE------------------------------CCCCEEEEEEECCCCCCCE---------
T ss_conf 2688438--9995257403750------------------------------7853221369978877630---------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC-CCCCCEEEEE
Q ss_conf 888645555567880899927980999926888888532221111245799999999999999940006-9999722999
Q 000454 469 DSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRIL-PTPRGVNMIV 547 (1491)
Q Consensus 469 ~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~-~h~~~VtsIa 547 (1491)
...+++-+..+.|..|++......... .. ...+. ........++
T Consensus 188 ------------~~lyv~d~~~~~i~~~d~~~~g~~~~~----~~-------------------~~~~~~~~~~~pdGia 232 (314)
T d1pjxa_ 188 ------------YQLIVAETPTKKLWSYDIKGPAKIENK----KV-------------------WGHIPGTHEGGADGMD 232 (314)
T ss_dssp ------------EEEEEEETTTTEEEEEEEEETTEEEEE----EE-------------------EEECCCCSSCEEEEEE
T ss_pred ------------EEEEEEEECCCCEEEEECCCCCCCCEE----EE-------------------EEECCCCCCCCCEEEE
T ss_conf ------------379998602431177611676543015----68-------------------9971335666410257
Q ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 9479989999954663999988999458998079988499999139994999995899199996899
Q 000454 548 WSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1491)
Q Consensus 548 fSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~t 614 (1491)
+..+|++.++....+.|.+|+...+..+..+.......++++|.|+...++++.+..|.|...++..
T Consensus 233 vD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCC
T ss_conf 8347857999827999999969999799999799998789999289899999987899199997899
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.18 E-value=9.9e-08 Score=61.17 Aligned_cols=30 Identities=10% Similarity=0.015 Sum_probs=11.5
Q ss_pred EEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 499999139994999995899199996899
Q 000454 585 TYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1491)
Q Consensus 585 VtsIafSPdd~~lLaSgS~DGtIrIWDl~t 614 (1491)
...++|+|++..+.++.-.++.|.+|++..
T Consensus 195 Pr~i~f~pdg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEEECCCCCEEEEECCCCCEEEEEEECC
T ss_conf 089998899866999515899899999559
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.12 E-value=1.9e-07 Score=59.31 Aligned_cols=111 Identities=18% Similarity=0.204 Sum_probs=59.9
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE--CCCCCEEEEEEECCCCCEEEEEEC-CCCEEEEECCCCCEEE
Q ss_conf 2299994799899999546639999889994589980--799884999991399949999958-9919999689992289
Q 000454 543 VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLT--GHTESTYVLDVHPFNPRIAMSAGY-DGKTIVWDIWEGIPIR 619 (1491)
Q Consensus 543 VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~--gHs~~VtsIafSPdd~~lLaSgS~-DGtIrIWDl~tGk~i~ 619 (1491)
...+++.+++..+++....+.|++|+. +++.+..+. +.......|++.+ ++.++++-.. ++.|.+|+. +|+.+.
T Consensus 159 ~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~-~G~~~~ 235 (279)
T d1q7fa_ 159 PNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ-DGQLIS 235 (279)
T ss_dssp EEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT-TSCEEE
T ss_pred CCEEEECCCEEEEEEECCCCCEEEEEC-CCCEEEEECCCCCCCCCCCCCCCC-CCEEEEEECCCCCEEEEECC-CCCEEE
T ss_conf 624320120017862013551002304-794445301132114876232314-78699997899808999999-999999
Q ss_pred EEEECC--CCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 986078--64689999489999999958981999998998
Q 000454 620 IYEISR--FRLVDGKFSPDGASIILSDDVGQLYILNTGQG 657 (1491)
Q Consensus 620 ~l~~h~--~~VtsIafSPDG~~LAsgs~DG~I~IWdl~tG 657 (1491)
.+.... .....+++.|||.+ ++++.+..|.+|...+.
T Consensus 236 ~~~~~~~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 236 ALESKVKHAQCFDVALMDDGSV-VLASKDYRLYIYRYVQL 274 (279)
T ss_dssp EEEESSCCSCEEEEEEETTTEE-EEEETTTEEEEEECSCC
T ss_pred EEECCCCCCCEEEEEEECCCCE-EEEECCCEEEEEEEEEE
T ss_conf 9968888898837999089919-99918996999872203
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.04 E-value=3.9e-07 Score=57.35 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=48.5
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 7987899999689999999908976999987889188997068999699999579999999979
Q 000454 242 HRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN 305 (1491)
Q Consensus 242 H~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~ 305 (1491)
....+-.++|+++|++.++-...+.|..|+..++.....+.........++|.++|+++++...
T Consensus 38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~ 101 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLG 101 (319)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECT
T ss_pred CCCCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEECC
T ss_conf 8867470789999999999779999999989999599999489987038999999999999568
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.94 E-value=9.9e-07 Score=54.71 Aligned_cols=246 Identities=14% Similarity=0.086 Sum_probs=138.1
Q ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEEC----CCCEEEECCC
Q ss_conf 999699999579999999979981999979999860331267775599995379995079999928----9919997067
Q 000454 285 EGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSD----DGTCRIWDAR 360 (1491)
Q Consensus 285 ~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~----DGtIrIWDl~ 360 (1491)
...+..++|.++|+++++-...+.|..|+.........+.........++|.+++. ++++... .+.+...+..
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~---l~va~~~~~~~~~~i~~~~~~ 115 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR---LFVCYLGDFKSTGGIFAATEN 115 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC---EEEEECTTSSSCCEEEEECTT
T ss_pred CCCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCC---EEEEECCCCCCCEEEEEECCC
T ss_conf 86747078999999999977999999998999959999948998703899999999---999956897311049987389
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEC
Q ss_conf 78765425137999732488878888899999632899987799889993089519998089999989999984022104
Q 000454 361 YSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLS 440 (1491)
Q Consensus 361 tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~ 440 (1491)
.......... ......+..+++.++|.+.++...... .
T Consensus 116 ~~~~~~~~~~------------------~~~~~~~nd~~~d~~G~l~vtd~~~~~-----------------~------- 153 (319)
T d2dg1a1 116 GDNLQDIIED------------------LSTAYCIDDMVFDSKGGFYFTDFRGYS-----------------T------- 153 (319)
T ss_dssp SCSCEEEECS------------------SSSCCCEEEEEECTTSCEEEEECCCBT-----------------T-------
T ss_pred CCEEEEECCC------------------CCCCCCCCCEEEEECCCEEECCCCCCC-----------------C-------
T ss_conf 9636444267------------------775558752267730653200135400-----------------2-------
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88898107998267512223335688788886455555678808999279809999268888885322211112457999
Q 000454 441 GHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPP 520 (1491)
Q Consensus 441 gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~ 520 (1491)
...+. ...+.+++ +.+...
T Consensus 154 ~~~g~--v~~~~~dg-----------------------------------~~~~~~------------------------ 172 (319)
T d2dg1a1 154 NPLGG--VYYVSPDF-----------------------------------RTVTPI------------------------ 172 (319)
T ss_dssp BCCEE--EEEECTTS-----------------------------------CCEEEE------------------------
T ss_pred CCCCE--EEEEECCC-----------------------------------CEEEEE------------------------
T ss_conf 57421--57884166-----------------------------------335788------------------------
Q ss_pred CCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEE-ECCCEEEEEECCC-CCEEEE-------EECCCCCEEEEEEE
Q ss_conf 99999999999940006999972299994799899999-5466399998899-945899-------80799884999991
Q 000454 521 PPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAA-IMDCRICVWNAAD-GSLVHS-------LTGHTESTYVLDVH 591 (1491)
Q Consensus 521 ~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSg-s~DG~I~IWDl~t-gkli~t-------L~gHs~~VtsIafS 591 (1491)
...-...+.++|+++++.|+++ +..+.|+.|++.. +..... ..........+++.
T Consensus 173 ----------------~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD 236 (319)
T d2dg1a1 173 ----------------IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID 236 (319)
T ss_dssp ----------------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred ----------------EECCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEEC
T ss_conf ----------------6123301000101222127874046891479997699836202463333125776410364173
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCEEEEEEEC------CCCEEEEEECCCCCEEEEEECC------CCEEEEEC
Q ss_conf 399949999958991999968999228998607------8646899994899999999589------81999998
Q 000454 592 PFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEIS------RFRLVDGKFSPDGASIILSDDV------GQLYILNT 654 (1491)
Q Consensus 592 Pdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h------~~~VtsIafSPDG~~LAsgs~D------G~I~IWdl 654 (1491)
+ ++++.++....+.|.+|+. +|+.+..+... ...+++++|.+++..+++...+ |.|+..+.
T Consensus 237 ~-~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~ 309 (319)
T d2dg1a1 237 S-DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 309 (319)
T ss_dssp T-TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred C-CCCEEEEECCCCEEEEECC-CCCEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCEEEEEEEC
T ss_conf 8-9999999848998999979-99598899688757786750466778079988999857877699605999929
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.89 E-value=1.4e-06 Score=53.68 Aligned_cols=241 Identities=9% Similarity=0.114 Sum_probs=117.1
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEEC------CCCCEEEEEECCCCC-EEEEE-ECCCEEEEEECCC
Q ss_conf 789999968999999990897699998788918899706------899969999957999-99999-7998199997999
Q 000454 245 AVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCRG------HEGDITDLAVSSNNA-LVASA-SNDCIIRVWRLPD 316 (1491)
Q Consensus 245 ~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~g------H~~~ItsIafSPDg~-lLASG-S~DGtIrIWDl~t 316 (1491)
.-..|+++++|+++++-.....|++|+.. |..+..+.. .......+++..+.. ++++. +.++.|.+++. .
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC-C
T ss_conf 90079994999899997998989999699-999998166578866422663000123445520000477531000002-5
Q ss_pred CCCEEEEC-CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 98603312-67775599995379995079999928991999706778765425137999732488878888899999632
Q 000454 317 GLPISVLR-GHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQI 395 (1491)
Q Consensus 317 gk~i~~L~-gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V 395 (1491)
+.....+. ........+++.+++. ++++....+.+.+++... ..+..+.. ..+....
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~---i~v~~~~~~~~~~~~~~g-~~~~~~g~------------------~~~~~~~ 159 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGR---IIVVECKVMRVIIFDQNG-NVLHKFGC------------------SKHLEFP 159 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSC---EEEEETTTTEEEEECTTS-CEEEEEEC------------------TTTCSSE
T ss_pred CCCEEECCCCCCCCCCEECCCCCCC---EEEEEECCCEEEEECCCC-CEEECCCC------------------CCCCCCC
T ss_conf 6302403888642542000014784---799963263256762687-50100220------------------0102566
Q ss_pred EEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89998779988999308951999808999998999998402210488898107998267512223335688788886455
Q 000454 396 FCCAFNANGTVFVTGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK 475 (1491)
Q Consensus 396 ~sIafSPDG~~LasGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~ 475 (1491)
..+++.+++.++++....+.|.+|+... ..+..+
T Consensus 160 ~~i~~d~~g~i~v~d~~~~~V~~~d~~G----------~~~~~~------------------------------------ 193 (279)
T d1q7fa_ 160 NGVVVNDKQEIFISDNRAHCVKVFNYEG----------QYLRQI------------------------------------ 193 (279)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEETTC----------CEEEEE------------------------------------
T ss_pred CEEEECCCEEEEEEECCCCCEEEEECCC----------CEEEEE------------------------------------
T ss_conf 2432012001786201355100230479----------444530------------------------------------
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEE
Q ss_conf 55567880899927980999926888888532221111245799999999999999940006999972299994799899
Q 000454 476 NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFV 555 (1491)
Q Consensus 476 ~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~L 555 (1491)
+. .+.......+++.++|+++
T Consensus 194 ------------g~-----------------------------------------------~g~~~~P~giavD~~G~i~ 214 (279)
T d1q7fa_ 194 ------------GG-----------------------------------------------EGITNYPIGVGINSNGEIL 214 (279)
T ss_dssp ------------SC-----------------------------------------------TTTSCSEEEEEECTTCCEE
T ss_pred ------------CC-----------------------------------------------CCCCCCCCCCCCCCCCEEE
T ss_conf ------------11-----------------------------------------------3211487623231478699
Q ss_pred EEEEC-CCEEEEEECCCCCEEEEEECC--CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 99954-663999988999458998079--988499999139994999995899199996899922
Q 000454 556 LAAIM-DCRICVWNAADGSLVHSLTGH--TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIP 617 (1491)
Q Consensus 556 aSgs~-DG~I~IWDl~tgkli~tL~gH--s~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~ 617 (1491)
++-.. +..|.+|+. +|+.+.++... ....+.|++.| ++.+++ +..+..|++|......+
T Consensus 215 Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~-dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 215 IADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD-DGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp EEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET-TTEEEE-EETTTEEEEEECSCCCC
T ss_pred EEECCCCCEEEEECC-CCCEEEEEECCCCCCCEEEEEEEC-CCCEEE-EECCCEEEEEEEEEECC
T ss_conf 997899808999999-999999996888889883799908-991999-91899699987220357
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.65 E-value=8.4e-06 Score=48.71 Aligned_cols=67 Identities=9% Similarity=0.012 Sum_probs=35.7
Q ss_pred ECCC--CCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEC-C-----CEEEEEECCCCCC
Q ss_conf 9689--999999908976999987889188997068999699999579999999979-9-----8199997999986
Q 000454 251 FDRS--GRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASN-D-----CIIRVWRLPDGLP 319 (1491)
Q Consensus 251 FSpD--Gk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~-D-----GtIrIWDl~tgk~ 319 (1491)
.+|| |++||..+. +.|.+.++.++... .|..+.+.+...+|||||+.||.... + ..|.+++..++..
T Consensus 6 ~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 6 LNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI 80 (281)
T ss_dssp EEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred CCCCCCCCEEEEEEC-CCEEEEECCCCCEE-EEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCE
T ss_conf 588879999999909-96899989999879-9766998526779878999899998628987722899998259952
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.50 E-value=2.2e-05 Score=46.05 Aligned_cols=101 Identities=7% Similarity=0.121 Sum_probs=63.3
Q ss_pred EECCC--CCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEE-CCC-----CEEEECCCCCC
Q ss_conf 99579--99999997998199997999986033126777559999537999507999992-899-----19997067787
Q 000454 292 AVSSN--NALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSS-DDG-----TCRIWDARYSQ 363 (1491)
Q Consensus 292 afSPD--g~lLASGS~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS-~DG-----tIrIWDl~tg~ 363 (1491)
..+|| |+.+|..+ ++.|.+.++..+... .+..+.+.+...+|+|||+ .|+... .++ .|.+++..++.
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~---~iaf~~~~~~~~~~~~i~~~~~~~g~ 79 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGR---KIAIRVMRGSSLNTADLYFYNGENGE 79 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSS---EEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred CCCCCCCCCEEEEEE-CCCEEEEECCCCCEE-EEECCCCCCCCEEECCCCC---EEEEEEEECCCCCCEEEEEEEECCCC
T ss_conf 258887999999990-996899989999879-9766998526779878999---89999862898772289999825995
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEC
Q ss_conf 654251379997324888788888999996328999877998899930
Q 000454 364 FSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS 411 (1491)
Q Consensus 364 ~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs 411 (1491)
........ .. ............|+|+|+.|+...
T Consensus 80 ~~~lt~~~---~~-----------~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 80 IKRITYFS---GK-----------STGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp EEECCCCC---EE-----------EETTEECSEEEEECTTCCEEEEEC
T ss_pred EEEEEECC---CC-----------CCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 28864168---87-----------547644434310279887799997
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.44 E-value=2.9e-05 Score=45.21 Aligned_cols=99 Identities=17% Similarity=0.109 Sum_probs=47.4
Q ss_pred EEEEECCCCCEEEEE-ECCCEEEEEECCCC------CE--EEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 299994799899999-54663999988999------45--8998079988499999139994999995899199996899
Q 000454 544 NMIVWSLDNRFVLAA-IMDCRICVWNAADG------SL--VHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWE 614 (1491)
Q Consensus 544 tsIafSPDG~~LaSg-s~DG~I~IWDl~tg------kl--i~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~t 614 (1491)
+.++|+++++.++.+ +..+.|+.|++... +. ...+.+..+....+++.. ++.+.++.-..+.|..|+. +
T Consensus 151 Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp-~ 228 (295)
T d2ghsa1 151 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-D 228 (295)
T ss_dssp EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-T
T ss_pred CEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECC-CCCEEEEEECCCCEEEECC-C
T ss_conf 4024658776689851566324676453555532453578841675556663267869-9998953207884688569-9
Q ss_pred CCEEEEEEECCCCEEEEEEC-CCCCEEEEEE
Q ss_conf 92289986078646899994-8999999995
Q 000454 615 GIPIRIYEISRFRLVDGKFS-PDGASIILSD 644 (1491)
Q Consensus 615 Gk~i~~l~~h~~~VtsIafS-PDG~~LAsgs 644 (1491)
|+.+..+......+++++|- +|.+.|.+++
T Consensus 229 G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 229 GNHIARYEVPGKQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp CCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CCEEEEECCCCCCEEEEEEECCCCCEEEEEE
T ss_conf 9286686389985279898289999999997
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.30 E-value=6.5e-05 Score=42.98 Aligned_cols=370 Identities=12% Similarity=0.058 Sum_probs=164.7
Q ss_pred CCCEEEEEECCCEEEEEEC-CCCEEEEEEECCCC-----------CEEEEEECCC----CCEEEEEECCCEEEEEECCCC
Q ss_conf 9999999908976999987-88918899706899-----------9699999579----999999979981999979999
Q 000454 254 SGRYVITGSDDRLVKIWSM-ETAYCLASCRGHEG-----------DITDLAVSSN----NALVASASNDCIIRVWRLPDG 317 (1491)
Q Consensus 254 DGk~LATGS~DGtIkIWDl-~Tg~~l~tL~gH~~-----------~ItsIafSPD----g~lLASGS~DGtIrIWDl~tg 317 (1491)
+|.+.++.+.++.|...+. .+|+.+..+..... .-+.+++.++ ..+|+.++.|+.|.-.|..+|
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEECCCCC
T ss_conf 99999951789968999579988778870387886434321356666516983279988629999807987685436568
Q ss_pred CCEEEECCCC----CCEEE-EEECCCCCCEEEEEEEEC------CCCEEEECCCCCCCCCEEECCCCCCCCC--------
Q ss_conf 8603312677----75599-995379995079999928------9919997067787654251379997324--------
Q 000454 318 LPISVLRGHT----AAVTA-IAFSPRPGSVYQLLSSSD------DGTCRIWDARYSQFSPRIYIPRPSDAVA-------- 378 (1491)
Q Consensus 318 k~i~~L~gHs----~~Vts-IafSPdg~s~~~LiSgS~------DGtIrIWDl~tg~~i~~i~~~~~~~~~~-------- 378 (1491)
+.+..+.... ..++. -.+. .+ .++.+.. .|.|+-+|+.+++.+-++....+.....
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v~-~~----~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~ 216 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYVV-KD----KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT----EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CEECCCCCCCCCCCCCCCCCCCEE-CC----EEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 410231014655564224588177-77----5899302344433573289887888577886535886554555445433
Q ss_pred ----CC------CCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCC----------------EEEEEECCCCCCCCCCCC
Q ss_conf ----88------8788888999996328999877998899930895----------------199980899999899999
Q 000454 379 ----GR------NMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSDT----------------LARVWNACKPNTDDSDQP 432 (1491)
Q Consensus 379 ----g~------~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~DG----------------~IrIWDl~t~~~~~s~~~ 432 (1491)
+. ..............-..+++.+...++..+..+. .|...|+.++
T Consensus 217 ~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG-------- 288 (596)
T d1w6sa_ 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG-------- 288 (596)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC--------
T ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------
T ss_conf 333454554666678873334787422562215677725405645556520235653334443010263550--------
Q ss_pred CCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCEEEEEECCCEEEEEECCCCCCCCCC-
Q ss_conf 8402210488898107998267512223335688788886455----55567880899927980999926888888532-
Q 000454 433 NHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK----NSWFCHDNIVTCSRDGSAIIWIPRSRRSHPKA- 507 (1491)
Q Consensus 433 ~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~----~~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~- 507 (1491)
+..-.+......+...... ..+.+. ........++....+|.+.++|..+++.....
T Consensus 289 -~~~W~~Q~~~~D~Wd~d~~-----------------~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~ 350 (596)
T d1w6sa_ 289 -EAKFGYQKTPHDEWDYAGV-----------------NVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (596)
T ss_dssp -CEEEEEESSTTCSSCCCCC-----------------CCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -CCCCCCCCEECCCCCCCCC-----------------CCEEEEECCCCCCCCCCCEECCCCCCCEEEECCCCCCEEEECC
T ss_conf -0100124030256577654-----------------2106531033335553210014654322540677882554014
Q ss_pred ----CCCCCCCCCCCCCCCCCC--CCCCCCCCEECCCC-CC--CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE
Q ss_conf ----221111245799999999--99999994000699-99--7229999479989999954663999988999458998
Q 000454 508 ----ARWTQAYHLKVPPPPMPP--QPPRGGPRQRILPT-PR--GVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSL 578 (1491)
Q Consensus 508 ----~~~~~~~~l~~~~~~~~~--~~~~~~~~~~l~~h-~~--~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL 578 (1491)
..|..........+.... ..........+.+. .. .-...+++|+..++++...+.... |........
T Consensus 351 ~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~-~~~~~~~~~--- 426 (596)
T d1w6sa_ 351 LDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMD-WEPFMLPYK--- 426 (596)
T ss_dssp SSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEE-EEECCCCCC---
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCC-CCCCCCCCC---
T ss_conf 4665654454211245321274102357765535741544434467655477775597235334321-354345554---
Q ss_pred ECC--CCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 079--988499999139994999995899199996899922899860786468999948999999995898199999899
Q 000454 579 TGH--TESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQ 656 (1491)
Q Consensus 579 ~gH--s~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl~t 656 (1491)
.+. .+........|.+... ..-.-|.|.-||+.+|+.+..... ..++..-.++..|.++++|+.||.++.+|..+
T Consensus 427 ~g~~~~g~~~~~~~~~~g~~~--~~~~~G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~T 503 (596)
T d1w6sa_ 427 AGQFFVGATLNMYPGPKGDRQ--NYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDT 503 (596)
T ss_dssp TTSCCCCEEEEEEECTTSBTT--TTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTT
T ss_pred CCCCCCCCCCCCCCCCCCCCC--CCCCCCEEEEEECCCCCEECCCCC-CCCCCCCEEEECCCEEEEECCCCEEEEEECCC
T ss_conf 565311442320247566745--578855389980788856233278-88874414686699799978999599999999
Q ss_pred CCCCC
Q ss_conf 83124
Q 000454 657 GESQK 661 (1491)
Q Consensus 657 Gk~~~ 661 (1491)
|+.+-
T Consensus 504 Ge~LW 508 (596)
T d1w6sa_ 504 GDLLW 508 (596)
T ss_dssp CCEEE
T ss_pred CCEEE
T ss_conf 84836
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.29 E-value=6.7e-05 Score=42.88 Aligned_cols=230 Identities=12% Similarity=0.022 Sum_probs=117.0
Q ss_pred EEEEECC-CCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECC
Q ss_conf 9999968-999999990897699998788918899706899969999957999999997998199997999986033126
Q 000454 247 YCAIFDR-SGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG 325 (1491)
Q Consensus 247 tsIaFSp-DGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~L~g 325 (1491)
-+..|++ ++.+..+--..+.|..|+..++... .+. ....+.++++.+++.++++ +.+ .|.++|..+++.......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred ECCEEECCCCEEEEEECCCCEEEEEECCCCEEE-EEE-CCCCCEEEEEECCCCEEEE-EEC-CCEEEECCCCEEEEEEEE
T ss_conf 587598999999999878999999989989599-998-9998179899659988999-737-638950464513578664
Q ss_pred ----CCCCEEEEEECCCCCCEEEEEEEEC----CCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf ----7775599995379995079999928----99199970677876542513799973248887888889999963289
Q 000454 326 ----HTAAVTAIAFSPRPGSVYQLLSSSD----DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFC 397 (1491)
Q Consensus 326 ----Hs~~VtsIafSPdg~s~~~LiSgS~----DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~s 397 (1491)
....+..+.+.|++. +.++... .+.-.+|.+..++...... .-.....
T Consensus 97 ~~~~~~~~~nd~~vd~~G~---iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~---------------------~~~~~Ng 152 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGA---LWIGTMGRKAETGAGSIYHVAKGKVTKLFA---------------------DISIPNS 152 (295)
T ss_dssp STTCTTEEEEEEEECTTSC---EEEEEEETTCCTTCEEEEEEETTEEEEEEE---------------------EESSEEE
T ss_pred ECCCCCCCCEEEEECCCCC---EEEEECCCCCCCCCEEEEEECCCCEEEEEE---------------------CCCCCCE
T ss_conf 0478766101357979999---988742643133330576622996899865---------------------0687640
Q ss_pred EEECCCCCEEE-EECCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99877998899-93089519998089999989999984022104888981079982675122233356887888864555
Q 000454 398 CAFNANGTVFV-TGSSDTLARVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKN 476 (1491)
Q Consensus 398 IafSPDG~~La-sGs~DG~IrIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~ 476 (1491)
++|++++..++ +.+..+.|..|++.
T Consensus 153 ~~~s~d~~~l~~~dt~~~~I~~~~~d------------------------------------------------------ 178 (295)
T d2ghsa1 153 ICFSPDGTTGYFVDTKVNRLMRVPLD------------------------------------------------------ 178 (295)
T ss_dssp EEECTTSCEEEEEETTTCEEEEEEBC------------------------------------------------------
T ss_pred EEECCCCCEEEEEECCCCEEEEEEEC------------------------------------------------------
T ss_conf 24658776689851566324676453------------------------------------------------------
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEE
Q ss_conf 55678808999279809999268888885322211112457999999999999999400069999722999947998999
Q 000454 477 SWFCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVL 556 (1491)
Q Consensus 477 ~~~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~La 556 (1491)
......... ................+++..+|.+.+
T Consensus 179 -----------------------~~~~~~~~~---------------------~~~~~~~~~~~g~pdG~~vD~~GnlWv 214 (295)
T d2ghsa1 179 -----------------------ARTGLPTGK---------------------AEVFIDSTGIKGGMDGSVCDAEGHIWN 214 (295)
T ss_dssp -----------------------TTTCCBSSC---------------------CEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred -----------------------CCCCCCCCC---------------------EEEEECCCCCCCCCCCEEECCCCCEEE
T ss_conf -----------------------555532453---------------------578841675556663267869999895
Q ss_pred EEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEE-CCCCCEEEEEEC
Q ss_conf 99546639999889994589980799884999991-399949999958
Q 000454 557 AAIMDCRICVWNAADGSLVHSLTGHTESTYVLDVH-PFNPRIAMSAGY 603 (1491)
Q Consensus 557 Sgs~DG~I~IWDl~tgkli~tL~gHs~~VtsIafS-Pdd~~lLaSgS~ 603 (1491)
+....+.|..|+. .++++..+.-....+++++|- ++...+++|...
T Consensus 215 a~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 215 ARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp EEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EEECCCCEEEECC-CCCEEEEECCCCCCEEEEEEECCCCCEEEEEECC
T ss_conf 3207884688569-9928668638998527989828999999999787
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=98.28 E-value=7e-05 Score=42.76 Aligned_cols=370 Identities=10% Similarity=0.059 Sum_probs=165.8
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEEEECCC----------CCE-EEEEECCCCCEEEEEECCCEEEEEECCCCCCEEE
Q ss_conf 99999999089769999878891889970689----------996-9999957999999997998199997999986033
Q 000454 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHE----------GDI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1491)
Q Consensus 254 DGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~----------~~I-tsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~ 322 (1491)
+| .|..++.++.|.-+|..+|+.+..+.... ..+ ..+.+. ...++.++.++.+.-.|..+|+.+..
T Consensus 77 ~g-~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~ 153 (573)
T d1kb0a2 77 DG-IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWH 153 (573)
T ss_dssp TT-EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CC-EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCCEEEEECCCCEEEECCCCCCCEEC
T ss_conf 99-9999789996999958999858786798876533334566566652387--88189973365406661624300101
Q ss_pred ECCCC---CCEEEEEECC---CCCCEEEEEEEEC------CCCEEEECCCCCCCCCEEECCCCCCCCCCC---------C
Q ss_conf 12677---7559999537---9995079999928------991999706778765425137999732488---------8
Q 000454 323 LRGHT---AAVTAIAFSP---RPGSVYQLLSSSD------DGTCRIWDARYSQFSPRIYIPRPSDAVAGR---------N 381 (1491)
Q Consensus 323 L~gHs---~~VtsIafSP---dg~s~~~LiSgS~------DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~---------~ 381 (1491)
..... ..+. +.-.| .+ .++++.. .|.|..+|..+++.+..+............ .
T Consensus 154 ~~~~~~~~~~~~-~~~~p~v~~~----~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t 228 (573)
T d1kb0a2 154 QNTFEGQKGSLT-ITGAPRVFKG----KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART 228 (573)
T ss_dssp EETTTTCCSSCB-CCSCCEEETT----EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred CCCCCCCCCEEE-EECCEEEEEC----CEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 467568765078-6010279706----27992134455432218998568865102553104567777775432234323
Q ss_pred CCCCC--CCCCCCCCE-EEEEECCCCCEEEEECCCC-------------------EEEEEECCCCCCCCCCCCCCEEEEE
Q ss_conf 78888--899999632-8999877998899930895-------------------1999808999998999998402210
Q 000454 382 MAPSS--SAGPQSHQI-FCCAFNANGTVFVTGSSDT-------------------LARVWNACKPNTDDSDQPNHEIDVL 439 (1491)
Q Consensus 382 ~~~~~--~~~~h~~~V-~sIafSPDG~~LasGs~DG-------------------~IrIWDl~t~~~~~s~~~~~~i~~l 439 (1491)
..... ........+ ...++.+....++.+.... .|...|+.++ +..-..
T Consensus 229 ~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG---------~~~W~~ 299 (573)
T d1kb0a2 229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG---------KYKWHY 299 (573)
T ss_dssp SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC---------CEEEEE
T ss_pred CCCCCCEEECCCCCCCCCCCEECHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCH---------HEEECC
T ss_conf 58877546637987623561185433815511477754441000345666666420799615500---------012024
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCEEEEEECCCEEEEEECCCCCCCCCCCCCC----C
Q ss_conf 488898107998267512223335688788886455555---678808999279809999268888885322211----1
Q 000454 440 SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSW---FCHDNIVTCSRDGSAIIWIPRSRRSHPKAARWT----Q 512 (1491)
Q Consensus 440 ~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~---~~~~~LvSgS~DGtIrIWDl~s~k~~~~~~~~~----~ 512 (1491)
......+....... .+.+.... .....++.++.+|.+.++|..+++......... .
T Consensus 300 q~~~~d~wd~d~~~-----------------~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~ 362 (573)
T d1kb0a2 300 QETPGDNWDYTSTQ-----------------PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (573)
T ss_dssp ESSTTCCSCCCCCS-----------------CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred CCCCCCCCCCCCCC-----------------EEEECCEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 43675112001220-----------------1442020017972362021255531688612434422311225664344
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCC--CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC---CEEE
Q ss_conf 124579999999999999994000699--99722999947998999995466399998899945899807998---8499
Q 000454 513 AYHLKVPPPPMPPQPPRGGPRQRILPT--PRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTE---STYV 587 (1491)
Q Consensus 513 ~~~l~~~~~~~~~~~~~~~~~~~l~~h--~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~---~Vts 587 (1491)
........................... ...-..++++|+..++++...+....++.....+......+... ....
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 442 (573)
T d1kb0a2 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (573)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred CCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 42112200000002346663378631567766655420887616985411154253115553235577875310355322
Q ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCC
Q ss_conf 99913999499999589919999689992289986078646899994899999999589819999989983124
Q 000454 588 LDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQK 661 (1491)
Q Consensus 588 IafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl~tGk~~~ 661 (1491)
..+ + ...- .....-|.|.-||+.+|+.+..+.... +...-..+-.|.+|++++.||.++.||..+|+.+-
T Consensus 443 ~~~-~-~~~p-~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW 512 (573)
T d1kb0a2 443 AKF-F-NAEP-PKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512 (573)
T ss_dssp CEE-E-CSSC-CCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCC-C-CCCC-CCCCCCCCEEEECCCCCCEEEEECCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEE
T ss_conf 233-4-5688-777873617875787786670516889-88776079869989997799919999999886857
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.25 E-value=8.2e-05 Score=42.30 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=68.2
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEEEECCCC----------CE-EEEEECCCCCEEEEEECCCEEEEEECCCCCCEEE
Q ss_conf 999999990897699998788918899706899----------96-9999957999999997998199997999986033
Q 000454 254 SGRYVITGSDDRLVKIWSMETAYCLASCRGHEG----------DI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISV 322 (1491)
Q Consensus 254 DGk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~----------~I-tsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~ 322 (1491)
+| .|..++.++.|.-.|..+|+.+..+..... .+ ..++. .+..++.+..++.|.-.|..+|+.+..
T Consensus 66 ~g-~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~ 142 (560)
T d1kv9a2 66 DG-VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (560)
T ss_dssp TT-EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CC-EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCE--ECCEEEEEECCCEEEEEECCCCCEEEC
T ss_conf 99-999978999599996899987988779877644544322465357504--688499973898799997778957730
Q ss_pred ECCCCC-CEEEEEECC---CCCCEEEEEEEE------CCCCEEEECCCCCCCCCEEECCC
Q ss_conf 126777-559999537---999507999992------89919997067787654251379
Q 000454 323 LRGHTA-AVTAIAFSP---RPGSVYQLLSSS------DDGTCRIWDARYSQFSPRIYIPR 372 (1491)
Q Consensus 323 L~gHs~-~VtsIafSP---dg~s~~~LiSgS------~DGtIrIWDl~tg~~i~~i~~~~ 372 (1491)
+..... ....+.-.| ++ .++.+. ..|.|.-+|..+++.+-++....
T Consensus 143 ~~~~~~~~~~~~~~~p~v~~~----~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~ 198 (560)
T d1kv9a2 143 QQTTDPAKPYSITGAPRVVKG----KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVP 198 (560)
T ss_dssp EECSCTTSSCBCCSCCEEETT----EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred CCCCCCCCCEEEEEEEEEECC----CCCCCCCCEECCCCCEEEEEECCCCEEEEEEEECC
T ss_conf 576675540454320045068----51036531100135538999778862776641003
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.18 E-value=0.00012 Score=41.35 Aligned_cols=368 Identities=10% Similarity=-0.001 Sum_probs=165.7
Q ss_pred CCCEEEEEECCCEEEEEEC-CCCEEEEEEECCCC-----------CEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEE
Q ss_conf 9999999908976999987-88918899706899-----------96999995799999999799819999799998603
Q 000454 254 SGRYVITGSDDRLVKIWSM-ETAYCLASCRGHEG-----------DITDLAVSSNNALVASASNDCIIRVWRLPDGLPIS 321 (1491)
Q Consensus 254 DGk~LATGS~DGtIkIWDl-~Tg~~l~tL~gH~~-----------~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~ 321 (1491)
+|...++.+.++.|...|. .+|+.+.++..... .-..+++. +..|+.++.|+.+.-.|..+|+.+.
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCEEEEEECCCCEEEEEHHHHHHHC
T ss_conf 99999942879959999489998668883588886544200247688862650--8869999179757821002112202
Q ss_pred EECCCC----CCEEEEEECCCCCCEEEEEEEE------CCCCEEEECCCCCCCCCEEECCCCCCCCCCCC----------
Q ss_conf 312677----7559999537999507999992------89919997067787654251379997324888----------
Q 000454 322 VLRGHT----AAVTAIAFSPRPGSVYQLLSSS------DDGTCRIWDARYSQFSPRIYIPRPSDAVAGRN---------- 381 (1491)
Q Consensus 322 ~L~gHs----~~VtsIafSPdg~s~~~LiSgS------~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~---------- 381 (1491)
...... ..++..-...++ .++.+. ..|.|.-+|+.+++.+.+..............
T Consensus 140 ~~~~~~~~~~~~~t~~p~v~~~----~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~ 215 (571)
T d2ad6a1 140 EVEVCDPKVGSTLTQAPFVAKD----TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEETT----EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred CCCCCCCCCCCCEEECCEEECC----EEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3444554432414536757588----588850234423467479998889858899704688644455554454433467
Q ss_pred -------CCCCCCCCCCCCCE-EEEEECCCCCEEEEECCCC----------------EEEEEECCCCCCCCCCCCCCEEE
Q ss_conf -------78888899999632-8999877998899930895----------------19998089999989999984022
Q 000454 382 -------MAPSSSAGPQSHQI-FCCAFNANGTVFVTGSSDT----------------LARVWNACKPNTDDSDQPNHEID 437 (1491)
Q Consensus 382 -------~~~~~~~~~h~~~V-~sIafSPDG~~LasGs~DG----------------~IrIWDl~t~~~~~s~~~~~~i~ 437 (1491)
.............+ ...++.+...+++.+..+. .+...|+.++ +.+-
T Consensus 216 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG---------~~~W 286 (571)
T d2ad6a1 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG---------MAKW 286 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC---------CEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCH---------HHEE
T ss_conf 5555664567763143797520463305200834564034567522345663355653254412550---------1100
Q ss_pred EECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCEEEEEECCCEEEEEECCCCCCCCCCC-----C
Q ss_conf 1048889810799826751222333568878888645555567---8808999279809999268888885322-----2
Q 000454 438 VLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFC---HDNIVTCSRDGSAIIWIPRSRRSHPKAA-----R 509 (1491)
Q Consensus 438 ~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~---~~~LvSgS~DGtIrIWDl~s~k~~~~~~-----~ 509 (1491)
.+......+....... .+.+.....+ ...++.++.+|.+.++|..+++...... .
T Consensus 287 ~~q~~~~D~Wd~D~~~-----------------~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~ 349 (571)
T d2ad6a1 287 GYQKTPHDEWDFAGVN-----------------QMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN 349 (571)
T ss_dssp EEESSTTCSSCCCCCC-----------------CCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred CCCCCCCCCCCCCCCC-----------------CCCEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCCC
T ss_conf 1245676331465655-----------------64114551157665404632656449998568983765554677532
Q ss_pred CCCCCCCCCCCCCCC--CCCCCCCCCEECCCC-CCC--EEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf 111124579999999--999999994000699-997--229999479989999954663999988999458998079988
Q 000454 510 WTQAYHLKVPPPPMP--PQPPRGGPRQRILPT-PRG--VNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTES 584 (1491)
Q Consensus 510 ~~~~~~l~~~~~~~~--~~~~~~~~~~~l~~h-~~~--VtsIafSPDG~~LaSgs~DG~I~IWDl~tgkli~tL~gHs~~ 584 (1491)
+..........+... .............+. ... -...+++|+...+++...+....+........ .+....
T Consensus 350 ~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~----~~~~~~ 425 (571)
T d2ad6a1 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYR----AGQFFV 425 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC----TTSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCC----CCCCCC
T ss_conf 2345564446322376433345667257774022243466520778886289765534433430024566----775321
Q ss_pred EEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCC
Q ss_conf 4999991399949999958991999968999228998607864689999489999999958981999998998312
Q 000454 585 TYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDVGQLYILNTGQGESQ 660 (1491)
Q Consensus 585 VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~VtsIafSPDG~~LAsgs~DG~I~IWdl~tGk~~ 660 (1491)
...+.+.+ .+... .....|.|.-+|+.+|+.+....... +...-..+..+.++++++.||.++.+|..+|+.+
T Consensus 426 ~~~~~~~~-~~~~~-~~~~~G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~l 498 (571)
T d2ad6a1 426 GATLAMYP-GPNGP-TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp CEEEEEEE-CTTST-TSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCCEEECC-CCCCC-CCCCCCCEEEECCCCCCEEEECCCCC-CCCCCEEEECCCEEEEECCCCEEEEEECCCCCEE
T ss_conf 56303314-66776-66775617885367784642767899-9875605966997999778996999999998687
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.96 E-value=0.0003 Score=38.68 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=17.9
Q ss_pred EECCCCCEEEEEECCCCCCCEEECCC
Q ss_conf 99589982999518888980893127
Q 000454 729 EWRPSSLKLAVGPDFSLDQGYQLQPL 754 (1491)
Q Consensus 729 afSPDG~~LAvg~d~S~D~~v~lwp~ 754 (1491)
...|||++|.+.+-+|.|+...+-|+
T Consensus 392 t~~~dgk~l~~~nk~skdrfl~vgpl 417 (459)
T d1fwxa2 392 TLDATNDWLVCLSKFSKDRFLNVGPL 417 (459)
T ss_dssp STTCCSSEEEEEESCCTTSSCCCCSS
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 67888878998034343446678889
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.58 E-value=0.0012 Score=34.79 Aligned_cols=84 Identities=12% Similarity=-0.037 Sum_probs=54.6
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCC-EEEEEECCCCC
Q ss_conf 46639999889994589980799884999991399949999958991999968999228998607864-68999948999
Q 000454 560 MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR-LVDGKFSPDGA 638 (1491)
Q Consensus 560 ~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~-VtsIafSPDG~ 638 (1491)
..|.|.-+|+.+++.+............. ... .+.+++.++.||.++.+|..+|+.+..+...... ..-+.|..||+
T Consensus 442 ~~G~l~AiD~~TG~~~W~~~~~~~~~~g~-l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk 519 (571)
T d2ad6a1 442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGT-LYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK 519 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSCCCSBC-EEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCCCEEEECCCCCCEEEECCCCCCCCCCE-EEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCE
T ss_conf 75617885367784642767899987560-596-6997999778996999999998687899899996515648988999
Q ss_pred -EEEEEEC
Q ss_conf -9999958
Q 000454 639 -SIILSDD 645 (1491)
Q Consensus 639 -~LAsgs~ 645 (1491)
||++...
T Consensus 520 qYi~v~~g 527 (571)
T d2ad6a1 520 QYIGSMYG 527 (571)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
T ss_conf 99999906
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.44 E-value=0.0018 Score=33.66 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=27.9
Q ss_pred EEEEECCCCCEEEEEECCC-----------EEEEEECCCCEEEE--EE-ECCCCCEEEEEECCCCCEEEEEECC-CEEEE
Q ss_conf 9999968999999990897-----------69999878891889--97-0689996999995799999999799-81999
Q 000454 247 YCAIFDRSGRYVITGSDDR-----------LVKIWSMETAYCLA--SC-RGHEGDITDLAVSSNNALVASASND-CIIRV 311 (1491)
Q Consensus 247 tsIaFSpDGk~LATGS~DG-----------tIkIWDl~Tg~~l~--tL-~gH~~~ItsIafSPDg~lLASGS~D-GtIrI 311 (1491)
...+...+|+.++.|+.+. .+.+||..++.-.. .. ..+.......++.+++.+++.|+.+ ..+.+
T Consensus 23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~ 102 (387)
T d1k3ia3 23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 102 (387)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred EEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCEEE
T ss_conf 78999259999999840576667887760689999888896866677898744525689994688689863688862167
Q ss_pred EECCC
Q ss_conf 97999
Q 000454 312 WRLPD 316 (1491)
Q Consensus 312 WDl~t 316 (1491)
||..+
T Consensus 103 yd~~~ 107 (387)
T d1k3ia3 103 YDSSS 107 (387)
T ss_dssp EEGGG
T ss_pred ECCCC
T ss_conf 56755
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.33 E-value=0.0025 Score=32.75 Aligned_cols=365 Identities=12% Similarity=0.036 Sum_probs=158.2
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEEECCC--------CCE-EEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECC
Q ss_conf 9999999089769999878891889970689--------996-9999957999999997998199997999986033126
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHE--------GDI-TDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRG 325 (1491)
Q Consensus 255 Gk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~--------~~I-tsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~L~g 325 (1491)
+..|.+++.++.|.-.|..+|+.+.++.... ..+ ..+++. +..++.++.++.+...|..+|+.+.....
T Consensus 68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE--CCCEEEECCCCEEEEECCCCCCEEEEECC
T ss_conf 9999996899959999689998688876889876553334446774586--78158864887499811666630211102
Q ss_pred --CC------CCEEEEEECCCCCCEEEEEEE-------ECCCCEEEECCCCCCCCCEEECCCCCCCC--------CCCCC
Q ss_conf --77------755999953799950799999-------28991999706778765425137999732--------48887
Q 000454 326 --HT------AAVTAIAFSPRPGSVYQLLSS-------SDDGTCRIWDARYSQFSPRIYIPRPSDAV--------AGRNM 382 (1491)
Q Consensus 326 --Hs------~~VtsIafSPdg~s~~~LiSg-------S~DGtIrIWDl~tg~~i~~i~~~~~~~~~--------~g~~~ 382 (1491)
+. ..-..+.--.... .++.. ...+.|.-+|..+++.+-++......... .+...
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~---~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~ 222 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGK---VLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCC---EEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred CCCCCCCEEECCCEEECCCCEEE---EEEEECCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 47776612403866704884757---999907665434654634872388886789871217865622466653334323
Q ss_pred ---CC---------CCCCCCCCCCE-EEEEECCCCCEEEEECCCC------------------------EEEEEECCCCC
Q ss_conf ---88---------88899999632-8999877998899930895------------------------19998089999
Q 000454 383 ---AP---------SSSAGPQSHQI-FCCAFNANGTVFVTGSSDT------------------------LARVWNACKPN 425 (1491)
Q Consensus 383 ---~~---------~~~~~~h~~~V-~sIafSPDG~~LasGs~DG------------------------~IrIWDl~t~~ 425 (1491)
.+ ..........+ ..+++.+...+++.+..+. .|...|+.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG- 301 (582)
T d1flga_ 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSG- 301 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTC-
T ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCH-
T ss_conf 4457775455557764020589862254200356645896457865333443456787767643222120587335531-
Q ss_pred CCCCCCCCCEEEEE--CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 98999998402210--488898107998267512223335688788886455-555678808999279809999268888
Q 000454 426 TDDSDQPNHEIDVL--SGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFK-NSWFCHDNIVTCSRDGSAIIWIPRSRR 502 (1491)
Q Consensus 426 ~~~s~~~~~~i~~l--~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~-~~~~~~~~LvSgS~DGtIrIWDl~s~k 502 (1491)
+..-.+ ..|......+...|.. ..+. ..-.....++....++.+.++|..+++
T Consensus 302 --------~~~W~~q~~~~D~wd~d~~~~p~l----------------~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~ 357 (582)
T d1flga_ 302 --------EVKWFYQHTPNDAWDFSGNNELVL----------------FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp --------CEEEEEESSTTCCSCCCCCCCCEE----------------EEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred --------HHHHCCCCCCCCCCCCCCCCCCCC----------------CCCCCCCCCCCCEEEEECCCCCEEEECCCCCC
T ss_conf --------332113322355312322344332----------------34332344554235750464407862466873
Q ss_pred CCCC-----CCCCCCCCCCCCC-----CCCCCC---CCCCCCCCEECCCC---CCCEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf 8853-----2221111245799-----999999---99999994000699---997229999479989999954663999
Q 000454 503 SHPK-----AARWTQAYHLKVP-----PPPMPP---QPPRGGPRQRILPT---PRGVNMIVWSLDNRFVLAAIMDCRICV 566 (1491)
Q Consensus 503 ~~~~-----~~~~~~~~~l~~~-----~~~~~~---~~~~~~~~~~l~~h---~~~VtsIafSPDG~~LaSgs~DG~I~I 566 (1491)
.... ...|......... ...... ..........+.+. ...-...+++|+..++++...+....+
T Consensus 358 ~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~ 437 (582)
T d1flga_ 358 LQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDY 437 (582)
T ss_dssp EEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCCCEEEECCCCCCCC
T ss_conf 02223566755432335666565201156444533566445542897787557741144145587770531023455322
Q ss_pred EECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECC
Q ss_conf 98899945899807998849999913999499999589919999689992289986078646899994899999999589
Q 000454 567 WNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRLVDGKFSPDGASIILSDDV 646 (1491)
Q Consensus 567 WDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~VtsIafSPDG~~LAsgs~D 646 (1491)
|....... .+.......+...| +.....|.|.-+|+.+|+.+..+..+ .++..-..+..|.++++++.|
T Consensus 438 ~~~~~~~~----~g~~~~~~~~~~~~------~~~~~~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~d 506 (582)
T d1flga_ 438 WTEEVSYT----KGSAYLGMGFRIKR------MYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGD 506 (582)
T ss_dssp EECCCCCC----TTSCCCCEEEEEEE------SCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTT
T ss_pred CCCCCCCC----CCCCCCCCCCCCCC------CCCCCCCEEEEECCCCCCEEEECCCC-CCCCCCEEEECCCEEEEECCC
T ss_conf 22335543----36654266754453------66688775999807899587326779-997450169769869996799
Q ss_pred CCEEEEECCCCCCC
Q ss_conf 81999998998312
Q 000454 647 GQLYILNTGQGESQ 660 (1491)
Q Consensus 647 G~I~IWdl~tGk~~ 660 (1491)
|.++.+|..+|+.+
T Consensus 507 g~l~A~Da~TGe~L 520 (582)
T d1flga_ 507 GYFKAFDAKSGKEL 520 (582)
T ss_dssp SEEEEEETTTCCEE
T ss_pred CEEEEEECCCCCEE
T ss_conf 96999999998686
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.23 E-value=0.0031 Score=32.09 Aligned_cols=270 Identities=12% Similarity=0.085 Sum_probs=144.0
Q ss_pred CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEE
Q ss_conf 97699998788918899706899969999957999999997998199997999986033126777559999537999507
Q 000454 264 DRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVY 343 (1491)
Q Consensus 264 DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~ 343 (1491)
...|.|.|+........-. - ..-+.-.+|..+.||.-+ ...+.++|+++.+.+..+. ....|.--.|..+.
T Consensus 44 ~~~VvIidl~n~~~~~Rrp-i--~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis~~---- 114 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRP-I--SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN---- 114 (327)
T ss_dssp EEEEEEEETTSTTSCEEEE-C--CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESSSS----
T ss_pred CCEEEEEECCCCCCCEECC-C--CHHHHHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEE-CCCCCEEEEECCCC----
T ss_conf 8439999889987633144-3--616653088875799962-8868998446822111587-68885799944798----
Q ss_pred EEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEC-------CCCEE
Q ss_conf 99999289919997067787654251379997324888788888999996328999877998899930-------89519
Q 000454 344 QLLSSSDDGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGS-------SDTLA 416 (1491)
Q Consensus 344 ~LiSgS~DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs-------~DG~I 416 (1491)
.|+..+. ..|.-|++........+ +.+.. .-...+|..-..+++.++++..+ -.|.+
T Consensus 115 ~L~lVT~-taVYHW~~~g~s~P~k~-fdR~~--------------~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~m 178 (327)
T d1utca2 115 TVALVTD-NAVYHWSMEGESQPVKM-FDRHS--------------SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 178 (327)
T ss_dssp EEEEECS-SEEEEEESSSSCCCEEE-EECCG--------------GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEE
T ss_pred EEEEECC-CCEEEECCCCCCCCHHH-HHHCC--------------CCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEE
T ss_conf 8999918-81699735699985266-23210--------------12486389989899998899995713788305888
Q ss_pred EEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE---ECCCEE
Q ss_conf 99808999998999998402210488898107998267512223335688788886455555678808999---279809
Q 000454 417 RVWNACKPNTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSLADSSKEDSTPKFKNSWFCHDNIVTC---SRDGSA 493 (1491)
Q Consensus 417 rIWDl~t~~~~~s~~~~~~i~~l~gH~~~V~sIafSpdg~as~~s~~~~~~~~~~~~~~~~~~~~~~LvSg---S~DGtI 493 (1491)
.+|..+ ...-..+.+|......+.+...... ...|+.+ ...+.+
T Consensus 179 QLYS~e----------r~~sQ~ieGhaa~F~~~~~~g~~~~-----------------------~~lf~fa~r~~~~~kL 225 (327)
T d1utca2 179 QLYSVD----------RKVSQPIEGHAASFAQFKMEGNAEE-----------------------STLFCFAVRGQAGGKL 225 (327)
T ss_dssp EEEETT----------TTEEEEECCSEEEEEEECCTTCSSC-----------------------EEEEEEEEEETTEEEE
T ss_pred EEEEEC----------CCCCCCCCCEEEEEEEEECCCCCCC-----------------------CEEEEEEECCCCCCEE
T ss_conf 899802----------2867523203465688870799887-----------------------3099999878987479
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 99926888888532221111245799999999999999940006999972299994799899999546639999889994
Q 000454 494 IIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGS 573 (1491)
Q Consensus 494 rIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~tgk 573 (1491)
.+.++........ ........+-.++ ....+-..++..|+.-..+...+.-|.|++||+.++.
T Consensus 226 hIiEig~~~~g~~-~f~kk~vdi~fpp----------------ea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt 288 (327)
T d1utca2 226 HIIEVGTPPTGNQ-PFPKKAVDVFFPP----------------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 288 (327)
T ss_dssp EEEECSCCCTTCC-CCCCEEEECCCCT----------------TCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred EEEECCCCCCCCC-CCCCEEEEEECCC----------------CCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC
T ss_conf 9998688755788-8753268877796----------------3468847799964337999999667589999756662
Q ss_pred EEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 589980799884999991399949999958991999
Q 000454 574 LVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIV 609 (1491)
Q Consensus 574 li~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrI 609 (1491)
++..-+-..+.|...+-....+.++ ....+|.|..
T Consensus 289 ~i~~nRIs~~~iF~~a~~~~~~Gi~-~VNr~GqVl~ 323 (327)
T d1utca2 289 CIYMNRISGETIFVTAPHEATAGII-GVNRKGQVLS 323 (327)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEE-EEETTSEEEE
T ss_pred EEEEEECCCCCEEEECCCCCCCEEE-EECCCCEEEE
T ss_conf 8999404788448962678886089-9878976999
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.09 E-value=0.0043 Score=31.21 Aligned_cols=331 Identities=9% Similarity=-0.031 Sum_probs=150.1
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEEECCC----CCEEEEEECCCCCEEEEEEC------CCEEEEEECCCCCCEEEEC
Q ss_conf 9999999089769999878891889970689----99699999579999999979------9819999799998603312
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHE----GDITDLAVSSNNALVASASN------DCIIRVWRLPDGLPISVLR 324 (1491)
Q Consensus 255 Gk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~----~~ItsIafSPDg~lLASGS~------DGtIrIWDl~tgk~i~~L~ 324 (1491)
+.+|+.++.|+.|.-.|..+|+++..+.... ..++.--.- .+..++.+.. .|.|+-+|+.+|+.+..+.
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEEECCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCE-ECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEE
T ss_conf 62999980798768543656841023101465556422458817-77758993023444335732898878885778865
Q ss_pred CCC-------------------------------------CCE-EEEEECCCCCCEEEEEEEEC----------------
Q ss_conf 677-------------------------------------755-99995379995079999928----------------
Q 000454 325 GHT-------------------------------------AAV-TAIAFSPRPGSVYQLLSSSD---------------- 350 (1491)
Q Consensus 325 gHs-------------------------------------~~V-tsIafSPdg~s~~~LiSgS~---------------- 350 (1491)
... ..+ ..+++.+... +++.+..
T Consensus 200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~---lvy~~tg~~~p~~~~~r~g~n~y 276 (596)
T d1w6sa_ 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN---LIYFGTGNPAPWNETMRPGDNKW 276 (596)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT---EEEEECCCCSCSCGGGSCSCCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC---EEECCCCCCCCCCCCCCCCCCCC
T ss_conf 358865545554454333334545546666788733347874225622156777---25405645556520235653334
Q ss_pred CCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-ECCCC---CEEEEECCCCEEEEEECCCCCC
Q ss_conf 9919997067787654251379997324888788888999996328999-87799---8899930895199980899999
Q 000454 351 DGTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCA-FNANG---TVFVTGSSDTLARVWNACKPNT 426 (1491)
Q Consensus 351 DGtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIa-fSPDG---~~LasGs~DG~IrIWDl~t~~~ 426 (1491)
...|...|+.+++....+........- ......+..+. ...+| ..++....+|.+.++|..+++.
T Consensus 277 s~sivAlD~~TG~~~W~~Q~~~~D~Wd-----------~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~ 345 (596)
T d1w6sa_ 277 TMTIFGRDADTGEAKFGYQKTPHDEWD-----------YAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL 345 (596)
T ss_dssp SSEEEEEETTTCCEEEEEESSTTCSSC-----------CCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCC-----------CCCCCCEEEEECCCCCCCCCCCEECCCCCCCEEEECCCCCCE
T ss_conf 443010263550010012403025657-----------765421065310333355532100146543225406778825
Q ss_pred CCCCCCCCEEEEECC--CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC--C-----CCCC------CCCCEEEEEECCC
Q ss_conf 899999840221048--88981079982675122233356887888864--5-----5555------6788089992798
Q 000454 427 DDSDQPNHEIDVLSG--HENDVNYVQFSGCAVASRFSLADSSKEDSTPK--F-----KNSW------FCHDNIVTCSRDG 491 (1491)
Q Consensus 427 ~~s~~~~~~i~~l~g--H~~~V~sIafSpdg~as~~s~~~~~~~~~~~~--~-----~~~~------~~~~~LvSgS~DG 491 (1491)
+..... .......+...... ................ + ...| .....++....+.
T Consensus 346 ---------i~~~~~~~~~~~~~~~d~~~~~--p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~ 414 (596)
T d1w6sa_ 346 ---------VSANKLDDTVNVFKSVDLKTGQ--PVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHI 414 (596)
T ss_dssp ---------EEEEESSTTCCSEEEECTTTCC--EEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECE
T ss_pred ---------EEECCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf ---------5401446656544542112453--21274102357765535741544434467655477775597235334
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 09999268888885322211112457999999999999999400069999722999947998999995466399998899
Q 000454 492 SAIIWIPRSRRSHPKAARWTQAYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAAD 571 (1491)
Q Consensus 492 tIrIWDl~s~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~h~~~VtsIafSPDG~~LaSgs~DG~I~IWDl~t 571 (1491)
.. .|...... . ..+. ............+.+.... .-.-|.|.-||+.+
T Consensus 415 ~~-~~~~~~~~----------------------~--~~g~------~~~g~~~~~~~~~~g~~~~-~~~~G~l~A~D~~T 462 (596)
T d1w6sa_ 415 CM-DWEPFMLP----------------------Y--KAGQ------FFVGATLNMYPGPKGDRQN-YEGLGQIKAYNAIT 462 (596)
T ss_dssp EE-EEEECCCC----------------------C--CTTS------CCCCEEEEEEECTTSBTTT-TBCCEEEEEECTTT
T ss_pred CC-CCCCCCCC----------------------C--CCCC------CCCCCCCCCCCCCCCCCCC-CCCCCEEEEEECCC
T ss_conf 32-13543455----------------------5--4565------3114423202475667455-78855389980788
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCC-EEEEEECCCCC-EEEEEEC
Q ss_conf 94589980799884999991399949999958991999968999228998607864-68999948999-9999958
Q 000454 572 GSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR-LVDGKFSPDGA-SIILSDD 645 (1491)
Q Consensus 572 gkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~-VtsIafSPDG~-~LAsgs~ 645 (1491)
++.+...... .++..-..+. .+.+++.++.||.++.+|..+|+.+..+...... -.-+.|..||+ ||++...
T Consensus 463 G~~~W~~~~~-~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~~G 536 (596)
T d1w6sa_ 463 GDYKWEKMER-FAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG 536 (596)
T ss_dssp CCEEEEEEES-SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCEECCCCCC-CCCCCCEEEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEEEEEEC
T ss_conf 8562332788-8874414686-699799978999599999999848369989999540776899899999999936
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.90 E-value=0.0063 Score=30.12 Aligned_cols=82 Identities=10% Similarity=0.125 Sum_probs=54.1
Q ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCE-EEEEECCCCC-E
Q ss_conf 6399998899945899807998849999913999499999589919999689992289986078646-8999948999-9
Q 000454 562 CRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFRL-VDGKFSPDGA-S 639 (1491)
Q Consensus 562 G~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~V-tsIafSPDG~-~ 639 (1491)
|.|.-||+.+++.+........ ...-..+. .+.+++.++.||.++.+|..+|+.+..+....... .-+.|..||+ |
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p-~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY 534 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSP-WNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCEEEECCCCCCEEEEECCCCC-CCCCEEEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEE
T ss_conf 6178757877866705168898-87760798-699899977999199999998868579989899451677999899999
Q ss_pred EEEEEC
Q ss_conf 999958
Q 000454 640 IILSDD 645 (1491)
Q Consensus 640 LAsgs~ 645 (1491)
|++...
T Consensus 535 v~v~~G 540 (573)
T d1kb0a2 535 VSVAVG 540 (573)
T ss_dssp EEEEEC
T ss_pred EEEEEC
T ss_conf 999937
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.48 E-value=0.012 Score=28.24 Aligned_cols=115 Identities=14% Similarity=0.217 Sum_probs=58.1
Q ss_pred CEEEEEECCCCCEEEEEECCC-----------EEEEEECCCCCCEE--EE-CCCCCCEEEEEECCCCCCEEEEEEEECC-
Q ss_conf 969999957999999997998-----------19999799998603--31-2677755999953799950799999289-
Q 000454 287 DITDLAVSSNNALVASASNDC-----------IIRVWRLPDGLPIS--VL-RGHTAAVTAIAFSPRPGSVYQLLSSSDD- 351 (1491)
Q Consensus 287 ~ItsIafSPDg~lLASGS~DG-----------tIrIWDl~tgk~i~--~L-~gHs~~VtsIafSPdg~s~~~LiSgS~D- 351 (1491)
.+...+...++++++.|+.+. .+.+||..++.-.. .. ..+.......++.+++. +++.++.+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~---i~v~Gg~~~ 97 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ---IVVTGGNDA 97 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC---EEEECSSST
T ss_pred CCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCC---EEEEECCCC
T ss_conf 01789992599999998405766678877606899998888968666778987445256899946886---898636888
Q ss_pred CCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCC------CEEEEEECCC
Q ss_conf 91999706778765425137999732488878888899999632899987799889993089------5199980899
Q 000454 352 GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVTGSSD------TLARVWNACK 423 (1491)
Q Consensus 352 GtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~LasGs~D------G~IrIWDl~t 423 (1491)
..+.+||..+......-.. .....-.+++..+||.+++.|+.. ..+.+||..+
T Consensus 98 ~~~~~yd~~~~~w~~~~~~-------------------~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 98 KKTSLYDSSSDSWIPGPDM-------------------QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp TCEEEEEGGGTEEEECCCC-------------------SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred CCEEEECCCCCCCCCCCCC-------------------CCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCC
T ss_conf 6216756755744215656-------------------6421013035531782665213663335432056634888
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.38 E-value=0.014 Score=27.83 Aligned_cols=70 Identities=11% Similarity=0.054 Sum_probs=43.7
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEEECCCC-CEEEEEECC--CCCEEEEEEC------CCEEEEEECCCCCCEEEEC
Q ss_conf 99999990897699998788918899706899-969999957--9999999979------9819999799998603312
Q 000454 255 GRYVITGSDDRLVKIWSMETAYCLASCRGHEG-DITDLAVSS--NNALVASASN------DCIIRVWRLPDGLPISVLR 324 (1491)
Q Consensus 255 Gk~LATGS~DGtIkIWDl~Tg~~l~tL~gH~~-~ItsIafSP--Dg~lLASGS~------DGtIrIWDl~tgk~i~~L~ 324 (1491)
+..++.+..++.|.-.|..+|+++........ ....+.-.| ....++.+.. .|.|.-+|..+|+.+..+.
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEECCCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCEECCCCCEEEEEECCCCEEEEEEE
T ss_conf 8849997389879999777895773057667554045432004506851036531100135538999778862776641
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.05 E-value=0.021 Score=26.75 Aligned_cols=106 Identities=8% Similarity=0.023 Sum_probs=58.3
Q ss_pred CCCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCC------------EEEEEECCCCCEEEEEEECCCCCEEEEEEC
Q ss_conf 69999722999947998999995-46639999889994------------589980799884999991399949999958
Q 000454 537 LPTPRGVNMIVWSLDNRFVLAAI-MDCRICVWNAADGS------------LVHSLTGHTESTYVLDVHPFNPRIAMSAGY 603 (1491)
Q Consensus 537 ~~h~~~VtsIafSPDG~~LaSgs-~DG~I~IWDl~tgk------------li~tL~gHs~~VtsIafSPdd~~lLaSgS~ 603 (1491)
.+.......+.++|||+++++++ .+.++.|+|+..-. ...... ..-.-...+|.. .+....|.--
T Consensus 271 IPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~fd~-~g~aytslfi 348 (459)
T d1fwxa2 271 IPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFL 348 (459)
T ss_dssp EEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEECT-TSEEEEEETT
T ss_pred EECCCCCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECC-CCCCCCCCCCCC-CCEEEEEEEC
T ss_conf 86589877338899997899938858957999822535665046884521796113-576766203389-8429998612
Q ss_pred CCCEEEEECCCC----------CEEEEEEECCCCEEEE------EECCCCCEEEEEEC
Q ss_conf 991999968999----------2289986078646899------99489999999958
Q 000454 604 DGKTIVWDIWEG----------IPIRIYEISRFRLVDG------KFSPDGASIILSDD 645 (1491)
Q Consensus 604 DGtIrIWDl~tG----------k~i~~l~~h~~~VtsI------afSPDG~~LAsgs~ 645 (1491)
|..|.-|++... ..+..+..|-. +--+ ...|||++|++...
T Consensus 349 ds~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l~~~nk 405 (459)
T d1fwxa2 349 DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLSK 405 (459)
T ss_dssp TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEES
T ss_pred CCEEEEEECCHHHHHHCCCCCCCCEECCCCCCC-CCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 316999734405566446667731135433457-887745767867888878998034
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.90 E-value=0.024 Score=26.34 Aligned_cols=64 Identities=16% Similarity=0.098 Sum_probs=41.0
Q ss_pred CCCCEEEEEECCCCCEEEEEE-----CCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 798789999968999999990-----89769999878891889970689996999995799999999799
Q 000454 242 HRNAVYCAIFDRSGRYVITGS-----DDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASASND 306 (1491)
Q Consensus 242 H~~~VtsIaFSpDGk~LATGS-----~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLASGS~D 306 (1491)
+.-.+..+++||+++++|.+- +-..|++.|+.+++.+...-. ......++|.+|++.|+....+
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~ 191 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYP 191 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECC
T ss_pred CCCEECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCCC-CCCCCCEEECCCCCEEEEEEEC
T ss_conf 44133425853789879999556667210467741676403144222-4323641785799899999762
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.24 E-value=0.042 Score=24.82 Aligned_cols=106 Identities=7% Similarity=0.022 Sum_probs=58.6
Q ss_pred CCCCEEEEEECCCCCEEEEEE-CC----CEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECC-------
Q ss_conf 899969999957999999997-99----819999799998603312677755999953799950799999289-------
Q 000454 284 HEGDITDLAVSSNNALVASAS-ND----CIIRVWRLPDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDD------- 351 (1491)
Q Consensus 284 H~~~ItsIafSPDg~lLASGS-~D----GtIrIWDl~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~D------- 351 (1491)
+.-.+..++++|+++++|.+- .+ ..|++.|+.+++.+.... .......++|.+++. .|+....+
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~---~~~Y~~~~~~~~~~~ 198 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGK---GMFYNAYPQQDGKSD 198 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSS---EEEEEECCCCSSCCS
T ss_pred CCCEECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCC-CCCCCCCEEECCCCC---EEEEEEECCCCCCCC
T ss_conf 4413342585378987999955666721046774167640314422-243236417857998---999997626667654
Q ss_pred ---------CCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf ---------9199970677876542513799973248887888889999963289998779988999
Q 000454 352 ---------GTCRIWDARYSQFSPRIYIPRPSDAVAGRNMAPSSSAGPQSHQIFCCAFNANGTVFVT 409 (1491)
Q Consensus 352 ---------GtIrIWDl~tg~~i~~i~~~~~~~~~~g~~~~~~~~~~~h~~~V~sIafSPDG~~Las 409 (1491)
..|.+|.+.+......+.... ......+..+..+.++.+++.
T Consensus 199 ~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e----------------~d~~~~~~~~~~s~d~~~l~i 249 (430)
T d1qfma1 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEF----------------PDEPKWMGGAELSDDGRYVLL 249 (430)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECC----------------TTCTTCEEEEEECTTSCEEEE
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCC----------------CCCCCEEEEEECCCCCCEEEE
T ss_conf 433345786338999889886531002232----------------357725775302687624568
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.07 E-value=0.047 Score=24.50 Aligned_cols=75 Identities=11% Similarity=0.035 Sum_probs=26.7
Q ss_pred EEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf 299994799899999-546639999889994589980799884999991399949999958991999968999228998
Q 000454 544 NMIVWSLDNRFVLAA-IMDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIY 621 (1491)
Q Consensus 544 tsIafSPDG~~LaSg-s~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l 621 (1491)
..+++.+.+..|..+ ...+.|...++........+.+... ...|++. ++.+..+-...+.|...|..+++.+..+
T Consensus 170 ~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 170 NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (263)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEECCCCC-CEEEEEE--CCEEEEEECCCCEEEEEECCCCCCCEEE
T ss_conf 30799504758999928999999999999976999889998-6899999--9999999999997999989899510698
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.048 Score=24.46 Aligned_cols=113 Identities=12% Similarity=-0.004 Sum_probs=43.3
Q ss_pred EEEEEECCCCCEEEEEE--CCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEE
Q ss_conf 22999947998999995--4663999988999458998079988499999139994999995899199996899922899
Q 000454 543 VNMIVWSLDNRFVLAAI--MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRI 620 (1491)
Q Consensus 543 VtsIafSPDG~~LaSgs--~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~ 620 (1491)
...+++.|...+|+... ..+.|...++............-.....+++.+.+.++..+-...+.|...++........
T Consensus 122 P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~ 201 (266)
T d1ijqa1 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 201 (266)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCEEEEECCCCEEEEECCCCCCCEEEECCCCCCEECCCCCCCCEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEE
T ss_conf 33699980039488712699730268636888344120045320169986133569999528967999998999977999
Q ss_pred EEECC--CCEEEEEECCCCCEEEEEE-CCCCEEEEECCCC
Q ss_conf 86078--6468999948999999995-8981999998998
Q 000454 621 YEISR--FRLVDGKFSPDGASIILSD-DVGQLYILNTGQG 657 (1491)
Q Consensus 621 l~~h~--~~VtsIafSPDG~~LAsgs-~DG~I~IWdl~tG 657 (1491)
+.... .....+++. +.+|..++ .++.|+..+..+|
T Consensus 202 ~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g 239 (266)
T d1ijqa1 202 LEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG 239 (266)
T ss_dssp EECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred EECCCCCCCCEEEEEE--CCEEEEEECCCCEEEEEECCCC
T ss_conf 9389855664799998--9999999899996999999899
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.50 E-value=0.065 Score=23.58 Aligned_cols=83 Identities=11% Similarity=0.081 Sum_probs=56.5
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCC-EEEEEECCCCC
Q ss_conf 46639999889994589980799884999991399949999958991999968999228998607864-68999948999
Q 000454 560 MDCRICVWNAADGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIRIYEISRFR-LVDGKFSPDGA 638 (1491)
Q Consensus 560 ~DG~I~IWDl~tgkli~tL~gHs~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~~l~~h~~~-VtsIafSPDG~ 638 (1491)
..|.|.-+|+.+|+.+.....+.. +..-..+. .+.+++.++.||.++.+|..+|+.+..+...... -.-+.|..||+
T Consensus 464 ~~G~l~AiD~~TG~i~W~~~~~~p-~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~ 541 (582)
T d1flga_ 464 HVGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCCEEEEECCCCCCEEEECCCCCC-CCCCEEEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCE
T ss_conf 877599980789958732677999-74501697-6986999679996999999998686798899996216779998999
Q ss_pred -EEEEEE
Q ss_conf -999995
Q 000454 639 -SIILSD 644 (1491)
Q Consensus 639 -~LAsgs 644 (1491)
||++..
T Consensus 542 qYv~i~a 548 (582)
T d1flga_ 542 QYLGVTV 548 (582)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
T ss_conf 9999993
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.084 Score=22.87 Aligned_cols=79 Identities=11% Similarity=0.049 Sum_probs=36.7
Q ss_pred EEEEEECCCCCEEEEE-ECCCEEEEEECCCCCEEEEEECCC--CCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEE
Q ss_conf 2299994799899999-546639999889994589980799--8849999913999499999589919999689992289
Q 000454 543 VNMIVWSLDNRFVLAA-IMDCRICVWNAADGSLVHSLTGHT--ESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGIPIR 619 (1491)
Q Consensus 543 VtsIafSPDG~~LaSg-s~DG~I~IWDl~tgkli~tL~gHs--~~VtsIafSPdd~~lLaSgS~DGtIrIWDl~tGk~i~ 619 (1491)
.+.+++.+.+..|..+ ...+.|...++........+.... .....|++. +..++.+-..++.|...+..++....
T Consensus 166 p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~ 243 (266)
T d1ijqa1 166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVN 243 (266)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred EEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEE--CCEEEEEECCCCEEEEEECCCCCCEE
T ss_conf 1699861335699995289679999989999779999389855664799998--99999998999969999998996159
Q ss_pred EEEE
Q ss_conf 9860
Q 000454 620 IYEI 623 (1491)
Q Consensus 620 ~l~~ 623 (1491)
.+..
T Consensus 244 ~~~~ 247 (266)
T d1ijqa1 244 LLAE 247 (266)
T ss_dssp EEEC
T ss_pred EEEC
T ss_conf 9776
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.87 E-value=0.087 Score=22.75 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=36.3
Q ss_pred CEEEEEECCCCCEEEEE-ECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEE-EEECCCEEEEEECCCCCCEEE
Q ss_conf 78999996899999999-0897699998788918899706899969999957999999-997998199997999986033
Q 000454 245 AVYCAIFDRSGRYVITG-SDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVA-SASNDCIIRVWRLPDGLPISV 322 (1491)
Q Consensus 245 ~VtsIaFSpDGk~LATG-S~DGtIkIWDl~Tg~~l~tL~gH~~~ItsIafSPDg~lLA-SGS~DGtIrIWDl~tgk~i~~ 322 (1491)
.+.+++|+...++|.-. ..++.|...++........+......+..+++..-+..|. +-...+.|.+.++........
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l 116 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 57999998589999999899991999976658728988701264207999636886888426789799880588167777
Q ss_pred ECCCCCCEEEEEECCCCC
Q ss_conf 126777559999537999
Q 000454 323 LRGHTAAVTAIAFSPRPG 340 (1491)
Q Consensus 323 L~gHs~~VtsIafSPdg~ 340 (1491)
+.........+++.|...
T Consensus 117 ~~~~l~~p~~l~vdp~~g 134 (263)
T d1npea_ 117 FDTGLVNPRGIVTDPVRG 134 (263)
T ss_dssp ECSSCSSEEEEEEETTTT
T ss_pred ECCCCCCCCEEEEECCCC
T ss_conf 125666872799925669
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.34 E-value=0.28 Score=19.51 Aligned_cols=63 Identities=6% Similarity=0.039 Sum_probs=43.2
Q ss_pred CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEE--------CCCCCEEEEEECCC
Q ss_conf 30589981679878999996899999999089769999878891889970--------68999699999579
Q 000454 233 MQNIKRVRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYCLASCR--------GHEGDITDLAVSSN 296 (1491)
Q Consensus 233 ~k~i~tL~GH~~~VtsIaFSpDGk~LATGS~DGtIkIWDl~Tg~~l~tL~--------gH~~~ItsIafSPD 296 (1491)
++.-....+ -..-++|+|.|||+++++--..|.|++++..++....... .-......|+|+|+
T Consensus 17 f~~~~ia~~-L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 17 FDKKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SCEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CEEEEEECC-CCCCEEEEEECCCEEEEEEECCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 379998889-99843899928990999993488799998999967561368752003688874233796799
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.02 E-value=0.64 Score=17.16 Aligned_cols=107 Identities=8% Similarity=0.006 Sum_probs=46.9
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCC-----------CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 89999968999999990897699998788-----------9188997068999699999579999999979981999979
Q 000454 246 VYCAIFDRSGRYVITGSDDRLVKIWSMET-----------AYCLASCRGHEGDITDLAVSSNNALVASASNDCIIRVWRL 314 (1491)
Q Consensus 246 VtsIaFSpDGk~LATGS~DGtIkIWDl~T-----------g~~l~tL~gH~~~ItsIafSPDg~lLASGS~DGtIrIWDl 314 (1491)
...+++++...+++.|+.++ ++|-.+.. ........ -..|..++|+.+ .|+... ++.+..++.
T Consensus 39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~~-~~~l~~~~~ 112 (381)
T d1xipa_ 39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVST-RNALYSLDL 112 (381)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEEE-SSEEEEEES
T ss_pred CCEEEEECCCCEEEEECCCE-EEEEEHHHHHHHHHCCCCCCCCEECCC--CCCEEEEEEECC--EEEEEE-CCCEEEEEE
T ss_conf 42689957778899988997-799998997878655678886234168--998689986189--899995-897899985
Q ss_pred CCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCC
Q ss_conf 9998603312677755999953799950799999289919997067787
Q 000454 315 PDGLPISVLRGHTAAVTAIAFSPRPGSVYQLLSSSDDGTCRIWDARYSQ 363 (1491)
Q Consensus 315 ~tgk~i~~L~gHs~~VtsIafSPdg~s~~~LiSgS~DGtIrIWDl~tg~ 363 (1491)
..-...........++..+.+.|. .++....++.+.++++..+.
T Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~p~-----~~~l~~~~~~~~~~~l~~~~ 156 (381)
T d1xipa_ 113 EELSEFRTVTSFEKPVFQLKNVNN-----TLVILNSVNDLSALDLRTKS 156 (381)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS-----EEEEEETTSEEEEEETTTCC
T ss_pred ECCCCCCCCCCCCCCCCCEECCCC-----EEEEEECCCCEEEEEECCCC
T ss_conf 100145446554556111021886-----06999658977899941586
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