Citrus Sinensis ID: 000457

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480----
MRLKELALDLENQRQIQKRDPEGKKVLSDMENCSERTDGVSASDDKENLDEMLAASIAAEANESSSKSASKSATANLLEEDGDEDEEIILPTMGGNVDPAVFAALPPSMQHQLLVRNNDAKGKNVLSDDLGQADTVGISPESHDVVSKSRDHKKLDEMLAASIAAEEDGSLSNNASASAASLPLEEEDGDEDEEMILPAMTGNVDPAVLAALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQKAAAGRGVAGVQTSRIASEANREFIFSSSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSDSANNGASIDKSNFSSTDQSNSVTKLGPEESRKSFADDVETYLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKEIEQERPNGNNITGAGSMLTLNETGTSKAVPSEKRKFIGTSLDDTNESVSSIERNKQSTLKSGISLELSFKDNSENNCDDDDDIFAHLAAGKPVIFPNSPRAHSSISVSDSDWEEGTTERKGSSLSDDANAGINPPLNLEEGGISDESEVEWEEGPSCAPKSSLSFPAESEKTVSNIEEEANLQEAIRRSLLDVCIEKPNYALSEHNKCENLGENACDGTWLYDRENNMDDPNFLGESVSQQHESICEYVDGLGKLDTVGGINNSEVIGSLGRELKLYEPRNSDEKEMLINKPFEKDNSYFEQSRQGANDGANDGRSLCSDAPCEDSGTTMELTEVQLVKGRCLSASAKGDEHLTHEDKKNNCEAETSVLPGDKKNEIEVEMKHDFTAEPSCRTVGTSDTSIPLVKTSGNASIYDTDIEQKSAEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGASSRKRRSSDGDKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYTFNERFAKIRSKRIKKAVKGITGSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRERKVLEKFVLAEMENPERLTPAGGGRNANNVFRGNRRGKGQRVGRGRGRRRLCAEQSETSSSDDIGSDDTQEYYSEKFEGQQEVRRSTRSRKPVDYNVDDPEIADVGKILSNKESSNEEEAKQDSVHGVTGEASADYSRKKQHRADDPSIDKDYIERGGGFCIDDQEIGQPSVSPCDDPFLEAEITKDYMKMGGGFCHDESETREDQVAAKDPVVTGESPSTCFDSSDGVHCDVGLGDSTTSSNSKEATNGLENVGRTDTFDTEPNPVVQNATSTDSARNDAGRASRGSLTAMTFLRRKRRRS
ccHHHHHHHHHHHHHHHcccccccEEcccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEcccccccccHHHHHHccccHHHHHHHHHcccccccEEcccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHccccccccccHHHHHHHcccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHcccccEEEccccccccccccEEEEcccccccEEEEEEHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccc
ccHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEcccccccHHHHHcccHHHHHHHHHHcccccccEEEEcccccHHcccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEcccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccEEEEccccccccHEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEHHHHHHcHHcHHHHHHHHHHHHHHHHHHccccccEEEccccccccccccccccccccHEccccccccccccccHHcccccccccccEEEEEEEccccccccccHHHHHHHcccccccccccccHccccccccccccccEEEccccccccHHcccccccccHHHccccccccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccHHcccccccccccccEEEccccccccccccccccccccccccccEEcccccccccccEEEEEEcccccccccccccccccccEEcccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHHccccEEEccccHHHHHcccEEEEcccccccccEEEEHHHHHHHHcccHHHHHHHHHHHccccccccccccHHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHccccHHccHHHHHHHcccHHHccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEccccccccccccccccccEEccccccccccccccccccccEEEEccccccHcccccccccccccccHHccccccccccccccHHcccccccccccccccccccccccccEccccccccccccccccccccHcccHHHHHccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHHHccc
MRLKELALDLENQRQiqkrdpegkkVLSDmencsertdgvsasddKENLDEMLAASIAAEanesssksasKSATANlleedgdedeeiilptmggnvdpavfaalppsmqhqLLVRnndakgknvlsddlgqadtvgispeshdvvsksrdHKKLDEMLAASIaaeedgslsnnasasaaslpleeedgdedeemilpamtgnvdpavlaalppsmqLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQKAAAgrgvagvqtsriaseanrefifsssftgdkqvltssrvegkkdeqqqipsehpvsdsanngasidksnfsstdqsnsvtklgpeesrkSFADDVETYLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKEIEqerpngnnitgagsmltlnetgtskavpsekrkfigtslddtnesvSSIERNKQSTLKSGISLelsfkdnsenncdddddIFAHLaagkpvifpnsprahssisvsdsdweegtterkgsslsddanaginpplnleeggisdeseveweegpscapksslsfpaesektvSNIEEEANLQEAIRRSLLDVCiekpnyalsehnkcenlgenacdgtwlydrennmddpnflgesVSQQHESICEYVDglgkldtvgginnseVIGSLGRelklyeprnsdekemlinkpfekdnsyFEQSRQgandgandgrslcsdapcedsgttmeltEVQLVKgrclsasakgdehlthedkknnceaetsvlpgdkknEIEVEMkhdftaepscrtvgtsdtsiplvktsgnasiydtdieqksaeertpdtylkdskqntgIFATKAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFglpyiiapMEAEAQCAYMELANLvdgvvtddsdvfLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLgsdytegisgIGIVNAIEVvnafpeedglskfrewiespdptilgkfdvqtgassrkrrssdgdkdvnyaknsvggvsefdesisqfdedkQSAEYSQNMKKIFMDKHTQLRLEAFYTFNERFAKIRSKRIKKAVKGITGSQSLLLMDDAGQEVSKSRKKrknnglengnnrsqkapkkaeesvsgaqnnmekssqsQSRERKVLEKFVLAemenperltpagggrnannvfrgnrrgkgqrvgrgrgrrrlcaeqsetsssddigsddtqeYYSEKFEGQQEvrrstrsrkpvdynvddpeiadvgkilsnkessneeeakqdsvhgvtgeasadysrkkqhraddpsidkdyiergggfciddqeigqpsvspcddpfleaeITKDYmkmgggfchdesetredqvaakdpvvtgespstcfdssdgvhcdvglgdsttssnskeatnglenvgrtdtfdtepnpvvqnatstdsarndagrasrgsltAMTFLRRKRRRS
mrlkelaldlenqrqiqkrdpegkkvlsdmencsertdgvsasddKENLDEMLAASIAAeanesssksaskSATANLLEEDGDEDEEIILPTMGGNVDPAVFAALPPSMQHQLLVRNNDAKGKNVLSDDLGQadtvgispeshdvvsksrdhKKLDEMLAASIaaeedgslsnnASASAASLPLEEEDGDEDEEMILPAMTGNVDPAVLAALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQkaaagrgvagvqtsrIASEANrefifsssftgdkqvLTSSRvegkkdeqqqipsehpvsdsanngasidksnfsstdqsnsvtklgpeesrksfaddvetyldergrvrlskvramgirmtrdLQRNLEMMKEIeqerpngnnitgaGSMLTLNEtgtskavpsekrkfigtslddtnesvssiernkqstlksgISLELSFKDNSENNCDDDDDIFAHLAAGkpvifpnsprahssisvsdsdweegtterkgsslsddanaginpplnleegGISDESEVEWEEGpscapksslsfpaESEKTVSNIEEEANLQEAIRRSLLDVCIEKPNYalsehnkcenlGENACDGTWLYDRENNMDDPNFLGESVSQQHESICEYVDGLGKLDTVGGINNSEVIGSLGRELKLYEPRNSDEKEMLINKPFEKDNSYFEQSRQGANDGANDGRSLCSDAPCEDSGTTMELTEVQLVKGRCLSASAKgdehlthedkknnceaetsvlpgdkkNEIEVEMKHdftaepscrtvgtsdtsiplvktsgnasiydtdieqksaeertpdtylkdskqntgifATKAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGArsvyknifddrKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIespdptilgkfdvqtgassrkrrssdgdkdvnyaknsvggvsefdesisQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYTFNERFAKIRSKRIKKAVkgitgsqslllmdDAGQEVSksrkkrknnglengnnrsqkapkkaeesvsgaqnnmekssqsqsreRKVLEKFVLAemenperltpagggrnannvfrgnrrgkgqrvgrgrgrrrlcaeqsetsssddigsddtQEYYSekfegqqevrrstrsrkpvdynvddpeiadvgkilsnkessneeeakqdsvhgvtgeasadysrkkqhraddpsidKDYIERGGGFCIDDQEIGQPSVSPCDDPFLEAEITKDYMKMGGGFCHDESETREDQVAAKDPVVTGESpstcfdssdgvHCDVGLGdsttssnskeatnglenvgrtdtfdtepnpvvqnatstdsarndagrasrgsltamtflrrkrrrs
MRLKELALDLENQRQIQKRDPEGKKVLSDMENCSERTDGVSASDDKENLDEMLaasiaaeanesssksasksatanlleedgdedeeiilPTMGGNVDPAVFAALPPSMQHQLLVRNNDAKGKNVLSDDLGQADTVGISPESHDVVSKSRDHKKLDEMLAASIAAEEDGslsnnasasaaslPLeeedgdedeeMILPAMTGNVDPAVLAALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQKAAAGRGVAGVQTSRIASEANREFIFSSSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSDSANNGASIDKSNFSSTDQSNSVTKLGPEESRKSFADDVETYLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKEIEQERPNGNNITGAGSMLTLNETGTSKAVPSEKRKFIGTSLDDTNESVSSIERNKQSTLKSGISLELSFKDNSENNCdddddIFAHLAAGKPVIFPNSPRAHSSISVSDSDWEEGTTERKGSSLSDDANAGINPPLNLEEGGISDESEVEWEEGPSCAPKSSLSFPAESEKTVSNIEEEANLQEAIRRSLLDVCIEKPNYALSEHNKCENLGENACDGTWLYDRENNMDDPNFLGESVSQQHESICEYVDGLGKLDTVGGINNSEVIGSLGRELKLYEPRNSDEKEMLINKPFEKDNSYFEQSRQGANDGANDGRSLCSDAPCEDSGTTMELTEVQLVKGRCLSASAKGDEHLTHEDKKNNCEAETSVLPGDKKNEIEVEMKHDFTAEPSCRTVGTSDTSIPLVKTSGNASIYDTDIEQKSAEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGAssrkrrssdgdkdVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYTFNERFAKIRSKRIKKAVKGITGSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRERKVLEKFVLAEMENPERLTPAGGGRNANNVFrgnrrgkgqrvgrgrgrrrLCAEQSETsssddigsddTQEYYSEKFEGQQEVRRSTRSRKPVDYNVDDPEIADVGKILsnkessneeeAKQDSVHGVTGEASADYSRKKQHRADDPSIDKDYIERGGGFCIDDQEIGQPSVSPCDDPFLEAEITKDYMKMGGGFCHDESETREDQVAAKDPVVTGESPSTCFDSSDGVHCDVGLGDSTTSSNSKEATNGLENVGRTDTFDTEPNPVVQNATSTDSARNDAGRASRGSLTAMTFLRRKRRRS
****************************************************************************************ILPTMGGNVDPAVFAAL*****************************************************************************************************AVLAAL***MQLDLLVQ**********************FSELQIQAYLKTVAFRREIDEVQKAAAGRGVAGVQ***********FIF********************************************************************************************************************************************************************************************DIFAHLAAGKPVIF*****************************************************************************************AIRRSLLDVCIEKPNYALSEHNKCENLGENACDGTWLYDREN******FL*******HESICEYVDGLGKLDTVGGINNSEVIGSLGRELKL******************************************************************************************************************************************************************GIFATKAIENVHAEATEKILEEEMQILDHEYMYLG****************MFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKF******************************************************KIFMDKHTQLRLEAFYTFNERFAKIRSKRIKKAVKGIT**********************************************************************************************************************************************************************************************************************YIERGGGFCIDDQEI*******CDDPFLEAEITKDYMKMGGGFC**********************************************************************************************************
******************************************SDDKENLDEMLAASIAA*************************DEEIILPTMGGNVDPAVFAALPPSM*************************************************************************************MILPAMTGNVDPAVLAALPPSMQLDLLVQMR*******************KFSELQIQAYLKTVAFRREI********************ASEANREFIFSSS***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DIEQKSAEERTPDTYLKDSKQN**********************************************ESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGASSRKRRSSDGDKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQ*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
MRLKELALDLENQRQIQKRDPEGKKVLSDMENC************KENLDEMLAASIA********************EEDGDEDEEIILPTMGGNVDPAVFAALPPSMQHQLLVRNNDAKGKNVLSDDLGQADTVGISPE************KLDEMLAASIAA**************************DEEMILPAMTGNVDPAVLAALPPSMQLDLLVQMREQLMAENR**********EKFSELQIQAYLKTVAFRREIDEVQ************TSRIASEANREFIFSSSFTGDK****************************NNGASIDKS**********************FADDVETYLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKEIEQERPNGNNITGAGSMLTLNETGTSKAVPSEKRKFIGTSL*****************LKSGISLELSFKDNSENNCDDDDDIFAHLAAGKPVIFPNSP*************************SDDANAGINPPLNLEEGG********************************NIEEEANLQEAIRRSLLDVCIEKPNYALSEHNKCENLGENACDGTWLYDRENNMDDPNFLGESVSQQHESICEYVDGLGKLDTVGGINNSEVIGSLGRELKLYEPRNSDEKEMLINKPFEKDNSYFEQSRQGANDGANDGRSLCSDAPCEDSGTTMELTEVQLVKGRCLSASA********EDKKNNCEAETSVLPGDKKNEIEVEMKHDFTAEPSCRTVGTSDTSIPLVKTSGNASIYDTDIEQKSAEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKL*********EMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDV**************DKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYTFNERFAKIRSKRIKKAVKGITGSQSLLLMDD**************NGLE**********************************RKVLEKFVLAEMENPERLTPAGGGRNANNVFRGNRR*****************************SDDTQEYYSE****************PVDYNVDDPEIADVGKILSNK**********************************PSIDKDYIERGGGFCIDDQEIGQPSVSPCDDPFLEAEITKDYMKMGGGFCHD************************FDSSDGVHCDVGLGDSTTSSNSKEATNGLENVGRTDTFDTEPNPVVQN***************RGSLTAMTFLRRKRRRS
*RLKELALDLENQRQIQK************************SDDKENLDEMLAASIAAEANE********************EDEEIILPTMGGNVDPAVFAALPPSMQHQLLVRNNDAKGKNVLSDDL**********************KKLDEMLAASIAAEEDGS****************EDGDEDEEMILPAMTGNVDPAVLAALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQKAAAGRGVAGVQTSRIASEANR**IFSSSFTGD***********************************************************SFADDVETYLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKEIEQERP*******************************************S******STLKSGISLELSFKDNSENNCDDDDDIFAHLAAGKP*******************W********GSSLS***N******LN***GGISDESEVEWEEGPS******************NIEEEANLQEAIRRSLLDVCI***********************************************************************************************************************RSLCSDAPCEDSGTTMELTEVQLV****************************************************************************************************************AEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGASSRKRRSSDGDKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMD****LRLEAFYTFNER**************************************************************************************************************************************************************QQEVRRSTRSRKPV*YNVDD****************************************************DYIERGGGFCIDDQEIGQPSVSPCDDPFLEAEITKDYMKMGGGFCHD********************************************************************************************************
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MRLKELALDLENQRQIQKRDPEGKKVLSDMENCSERTDGVSASDDKENLDEMLAASIAAEANESSSKSASKSATANLLEEDGDEDEEIILPTMGGNVDPAVFAALPPSMQHQLLVRNNDAKGKNVLSDDLGQADTVGISPESHDVVSKSRDHKKLDEMLAASIAAEEDGSLSNNASASAASLPLEEEDGDEDEEMILPAMTGNVDPAVLAALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQKAAAGRGVAGVQTSRIASEANREFIFSSSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSDSANNGASIDKSNFSSTDQSNSVTKLGPEESRKSFADDVETYLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKEIEQERPNGNNITGAGSMLTLNETGTSKAVPSEKRKFIGTSLDDTNESVSSIERNKQSTLKSGISLELSFKDNSENNCDDDDDIFAHLAAGKPVIFPNSPRAHSSISVSDSDWEEGTTERKGSSLSDDANAGINPPLNLEEGGISDESEVEWEEGPSCAPKSSLSFPAESEKTVSNIEEEANLQEAIRRSLLDVCIEKPNYALSEHNKCENLGENACDGTWLYDRENNMDDPNFLGESVSQQHESICEYVDGLGKLDTVGGINNSEVIGSLGRELKLYEPRNSDEKEMLINKPFEKDNSYFEQSRQGANDGANDGRSLCSDAPCEDSGTTMELTEVQLVKGRCLSASAKGDEHLTHEDKKNNCEAETSVLPGDKKNEIEVEMKHDFTAEPSCRTVGTSDTSIPLVKTSGNASIYDTDIEQKSAEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGASSRKRRSSDGDKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFMDKHTQLRLEAFYTFNERFAKIRSKRIKKAVKGITGSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGAQNNMEKSSQSQSRERKVLEKFVLAEMENPERLTPAGGGRNANNVFRGNRRGKGQRVGRGRGRRRLCAEQSETSSSDDIGSDDTQEYYSEKFEGQQEVRRSTRSRKPVDYNVDDPEIADVGKILSNKESSNEEEAKQDSVHGVTGEASADYSRKKQHRADDPSIDKDYIERGGGFCIDDQEIGQPSVSPCDDPFLEAEITKDYMKMGGGFCHDESETREDQVAAKDPVVTGESPSTCFDSSDGVHCDVGLGDSTTSSNSKEATNGLENVGRTDTFDTEPNPVVQNATSTDSARNDAGRASRGSLTAMTFLRRKRRRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1484 2.2.26 [Sep-21-2011]
Q9ATY51479 DNA repair protein UVH3 O yes no 0.578 0.580 0.454 0.0
P146291196 DNA repair protein comple N/A no 0.159 0.197 0.397 9e-44
P356891170 DNA repair protein comple yes no 0.190 0.241 0.359 6e-42
P287151186 DNA repair protein comple no no 0.171 0.215 0.355 1e-41
P287061112 DNA repair protein rad13 yes no 0.140 0.187 0.392 7e-41
P072761031 DNA repair protein RAD2 O yes no 0.099 0.143 0.496 1e-37
Q8BMI4 908 Flap endonuclease GEN hom no no 0.094 0.154 0.377 5e-25
Q8W5R1641 Flap endonuclease GEN-lik no no 0.083 0.193 0.472 4e-23
Q17RS7 908 Flap endonuclease GEN hom no no 0.093 0.153 0.359 2e-22
Q9LPD2599 Flap endonuclease GEN-lik no no 0.097 0.242 0.409 3e-21
>sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3 OS=Arabidopsis thaliana GN=UVH3 PE=2 SV=1 Back     alignment and function desciption
 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/966 (45%), Positives = 600/966 (62%), Gaps = 108/966 (11%)

Query: 152  HKKLDEMLAASIAAEEDGSLSNNASASAASLPLEEEDGDEDEE---MILPAMTGNVDPAV 208
             +KLDEMLAAS+AAEE+ + ++ AS SAA++P EE++ ++ +    ++LP M GN+DPAV
Sbjct: 224  QEKLDEMLAASLAAEEERNFTSKASTSAAAIPSEEDEEEDSDGDEEILLPVMDGNIDPAV 283

Query: 209  LAALPPSMQLDLLVQMREQLMAENRQKYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQ 268
            LA+LPPSMQLDLL QMRE+LMAENRQKYQKVKKAPEKFSELQI+AYLKTVAFRREI+EVQ
Sbjct: 284  LASLPPSMQLDLLAQMREKLMAENRQKYQKVKKAPEKFSELQIEAYLKTVAFRREINEVQ 343

Query: 269  KAAAGRGVAGVQTSRIASEANREFIFSSSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSD 328
            ++A GR V GVQTSRIASEANREFIFSSSF GDK+VL S+R EG+ DE Q+  S+  +  
Sbjct: 344  RSAGGRAVGGVQTSRIASEANREFIFSSSFAGDKEVLASAR-EGRNDENQKKTSQQSLPV 402

Query: 329  SANNGASIDKSNFSSTDQSNSVTKLGPEESRKSFADDVETYLDERGRVRLSKVRAMGIRM 388
            S  N + + KS+        +  +L  +E  K+  +++E Y+DERGR R+ + R MGI+M
Sbjct: 403  SVKNASPLKKSD--------ATIELDRDEP-KNPDENIEVYIDERGRFRI-RNRHMGIQM 452

Query: 389  TRDLQRNLEMMKEIEQERPNGNNITGAGSMLTLNETGTS-KAVPSEKRKFIGTSLDDTNE 447
            TRD+QRNL +MKE E+        T +GSM   +ET ++ +  P+E  +F+  S     +
Sbjct: 453  TRDIQRNLHLMKEKER--------TASGSMAKNDETFSAWENFPTED-QFLEKS--PVEK 501

Query: 448  SVSSIE-RNKQSTLKSGISLELSF-KDNSENNCDDDDDIFAHLAAGKPVIFP---NSPRA 502
             V  +E +N  S L    S+E+SF  D    + +D+DD+F  LAAG PV      N P+ 
Sbjct: 502  DVVDLEIQNDDSMLHPPSSIEISFDHDGGGKDLNDEDDMFLQLAAGGPVTISSTENDPKE 561

Query: 503  HSSISVSDSDWEEGTTERKGSSLSDDANAG---INPPLNLEEGGISDESEVEWEEGPSCA 559
             +S   SDSDWEE   E+  S    +AN     I   +++ EG       V WEE     
Sbjct: 562  DTSPWASDSDWEEVPVEQNTSVSKLEANLSNQHIPKDISIAEG-------VAWEEYSCKN 614

Query: 560  PKSSLSFPAESEKTVSNIEEEANLQEAIRRSLLDVCIEKPNYALSEHNKCE-NLGENACD 618
              +S+     ++ T   +EEEA+LQEAI++SLL++  ++    L E+     NL  +   
Sbjct: 615  ANNSVENDTVTKITKGYLEEEADLQEAIKKSLLELHDKESGDVLEENQSVRVNLVVDKPS 674

Query: 619  GTWLYDRENNMDDPNFLGESVSQQHESICEYVDGLGKLDTVGGIN---NSEVIGS----- 670
               L  RE        +GE+  ++      ++D +  L T G I+   N+ V G+     
Sbjct: 675  EDSLCSRET-------VGEAEEER------FLDEITILKTSGAISEQSNTSVAGNADGQK 721

Query: 671  -LGRELKLYEPRNSDEKEMLINKPFEKDNSYFEQSRQGANDGANDGRSLCSDAPCEDSGT 729
             + ++   +    S+     ++    K  S    S + A + A+  R L + A   +   
Sbjct: 722  GITKQFGTHPSSGSNNVSHAVSNKLSKVKSVI--SPEKALNVASQNRMLSTMAKQHNE-- 777

Query: 730  TMELTEVQLVKGRCLSASAKGDEHLT-HEDKKNNCEAETSVLPGDKKNEIEVEMKHDFTA 788
              E +E    +   +SA    DE +T   D+K+N + E+S++  DK++    +++   T 
Sbjct: 778  --EGSESFGGESVKVSAMPIADEEITGFLDEKDNADGESSIMMDDKRDYSRRKIQSLVTE 835

Query: 789  --EPSCRTVGTSDTSIPLVKTSGNASIYDTDIEQKSAEERTPDTYLKDSKQNTGIFATKA 846
              +PS R V  S   I          ++DTD + +  EE   + +  +   +T  F  K 
Sbjct: 836  SRDPS-RNVVRSRIGI----------LHDTDSQNERREENNSNEHTFNIDSSTD-FEEKG 883

Query: 847  IENVHAEATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPY 906
               V  E +E  +EEE+++LD E++ LGDEQ+KLERNAESVSSEMFAECQELLQ+FG+PY
Sbjct: 884  ---VPVEFSEANIEEEIRVLDQEFVSLGDEQRKLERNAESVSSEMFAECQELLQIFGIPY 940

Query: 907  IIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKD 966
            IIAPMEAEAQCA+ME +NLVDG+VTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIEK+
Sbjct: 941  IIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIEKE 1000

Query: 967  LGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILG 1026
            LGL+R+K+IRMA+LLGSDYTEGISGIGIVNAIEVV AFPEEDGL KFREW+ESPDPTILG
Sbjct: 1001 LGLSRDKIIRMAMLLGSDYTEGISGIGIVNAIEVVTAFPEEDGLQKFREWVESPDPTILG 1060

Query: 1027 KFDVQTGASSRKRRSSDGDKDVNYAKNSVGGVSEFDESISQFDEDKQSAEYSQNMKKIFM 1086
            K D +TG+  +KR S+  D      K  + G S  D               ++ +K+IFM
Sbjct: 1061 KTDAKTGSKVKKRGSASVDN-----KGIISGASTDD---------------TEEIKQIFM 1100

Query: 1087 DKHTQL 1092
            D+H ++
Sbjct: 1101 DQHRKV 1106
Putative single-stranded DNA endonuclease involved in nucleotide excision repair (NER) of UV- and oxidative damaged DNA. May make the 3'-incision step in NER. Seems to play a role in senescence program.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|P14629|ERCC5_XENLA DNA repair protein complementing XP-G cells homolog OS=Xenopus laevis GN=ercc5 PE=2 SV=1 Back     alignment and function description
>sp|P35689|ERCC5_MOUSE DNA repair protein complementing XP-G cells homolog OS=Mus musculus GN=Ercc5 PE=1 SV=4 Back     alignment and function description
>sp|P28715|ERCC5_HUMAN DNA repair protein complementing XP-G cells OS=Homo sapiens GN=ERCC5 PE=1 SV=3 Back     alignment and function description
>sp|P28706|RAD13_SCHPO DNA repair protein rad13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad13 PE=2 SV=2 Back     alignment and function description
>sp|P07276|RAD2_YEAST DNA repair protein RAD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD2 PE=1 SV=2 Back     alignment and function description
>sp|Q8BMI4|GEN_MOUSE Flap endonuclease GEN homolog 1 OS=Mus musculus GN=Gen1 PE=2 SV=2 Back     alignment and function description
>sp|Q8W5R1|GENL2_ORYSJ Flap endonuclease GEN-like 2 OS=Oryza sativa subsp. japonica GN=SEND1 PE=2 SV=1 Back     alignment and function description
>sp|Q17RS7|GEN_HUMAN Flap endonuclease GEN homolog 1 OS=Homo sapiens GN=GEN1 PE=1 SV=2 Back     alignment and function description
>sp|Q9LPD2|GENL1_ARATH Flap endonuclease GEN-like 1 OS=Arabidopsis thaliana GN=GEN1 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1484
255552654 1641 DNA-repair protein UVH3, putative [Ricin 0.938 0.848 0.444 0.0
2960876971449 unnamed protein product [Vitis vinifera] 0.834 0.855 0.453 0.0
2254525221513 PREDICTED: DNA repair protein UVH3-like 0.595 0.584 0.508 0.0
356498232 1707 PREDICTED: LOW QUALITY PROTEIN: DNA repa 0.689 0.599 0.456 0.0
2978150701463 predicted protein [Arabidopsis lyrata su 0.768 0.779 0.419 0.0
184056241479 DNA repair protein UVH3 [Arabidopsis tha 0.578 0.580 0.454 0.0
119941231522 unnamed protein product [Arabidopsis tha 0.578 0.563 0.454 0.0
4494468471541 PREDICTED: DNA repair protein UVH3-like 0.638 0.614 0.444 0.0
4148653521531 TPA: hypothetical protein ZEAMMB73_72339 0.150 0.145 0.679 5e-87
3571135211460 PREDICTED: uncharacterized protein LOC10 0.304 0.309 0.445 6e-87
>gi|255552654|ref|XP_002517370.1| DNA-repair protein UVH3, putative [Ricinus communis] gi|223543381|gb|EEF44912.1| DNA-repair protein UVH3, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  972 bits (2513), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 717/1614 (44%), Positives = 918/1614 (56%), Gaps = 222/1614 (13%)

Query: 1    MRLKELALDLENQRQIQK-RDPEGKKVL---SDMENCSERTDGVSASDDKENLDEMLAAS 56
            MRLKELA DLENQR+ QK  D +GKK+L   S +EN  E  +      D+E LDEMLAAS
Sbjct: 117  MRLKELAKDLENQRRKQKIDDAKGKKILLEESKIENNDEDVENY----DQEILDEMLAAS 172

Query: 57   IAAEANESSSKSASKSATANLLEEDGDEDEEIILPTMGGNVDPAVFAALPPSMQHQLLVR 116
            IAAE     S +AS SA  +   ED          T  GNV                   
Sbjct: 173  IAAEDERRFSNTASASAVQDPENEDH---------TSNGNV------------------- 204

Query: 117  NNDAKGKNVLSD--DLGQADTVGISPESHDVVSKSRDHKKLDEMLAASIAAEEDGSLSNN 174
                  K VL D  D+ + D      E  DVV++S + +KLDEMLAASIAAEED    N 
Sbjct: 205  ------KEVLIDLIDMERTDL-----ERDDVVAESYNQEKLDEMLAASIAAEEDVISINT 253

Query: 175  ASASAASLPLEEEDGDEDEEMILPAMTGNVDPAVLAALPPSMQLDLLVQMREQLMAENRQ 234
            AS SAA++P EEE  DE EEMILP + G VDP VLAALPPSMQLDLLVQMRE+L+AENRQ
Sbjct: 254  ASTSAAAIPSEEEGNDEVEEMILPEICGKVDPTVLAALPPSMQLDLLVQMRERLIAENRQ 313

Query: 235  KYQKVKKAPEKFSELQIQAYLKTVAFRREIDEVQKAAAGRGVAGVQTSRIASEANREFIF 294
            KYQKVKKAPEKFSELQI+AYLKTVAFRREID VQKAAAG GV GVQ+SRIASEANREFIF
Sbjct: 314  KYQKVKKAPEKFSELQIEAYLKTVAFRREIDHVQKAAAGNGVGGVQSSRIASEANREFIF 373

Query: 295  SSSFTGDKQVLTSSRVEGKKDEQQQIPSEHPVSDSANNGASIDKSNFSSTDQSNSVTKLG 354
            SSSFTGDKQ+LTS+ V+   ++QQQ P+ +P  DS N          +ST +SN+V+   
Sbjct: 374  SSSFTGDKQLLTSTGVQRNGNKQQQAPTMNPTFDSMNC--------VTSTSKSNAVSGSV 425

Query: 355  PEESRKSFADDVETYLDERGRVRLSKVRAMGIRMTRDLQRNLEMMKEIEQERPNGNNITG 414
             +E R+ F +DVETYLDE GR+R+S+VRAMG+RMTRDLQRNL++MKEIEQER +      
Sbjct: 426  QDEPRRVFDEDVETYLDENGRIRVSRVRAMGMRMTRDLQRNLDLMKEIEQERTHAIETAP 485

Query: 415  AGSMLTLNETGTSKAVPSEKRKFIGTSLDDTNESVSSIERNKQSTLKSGISLELSFKDNS 474
            + S LT ++ G+ K+ PS K+  + +S D  ++SV   ERN+QS L    S+++SF+ + 
Sbjct: 486  SQSELTRDKIGSPKSFPS-KKLHVESSHDKHSDSVKLNERNQQSMLNDEGSIQISFEADG 544

Query: 475  ENNC-DDDDDIFAHLAAGKPVIFPN----SPRAHSSISVSDSDWEEGTTERKGSSLSDDA 529
             + C D DDD+F  L AG+PV  P+    + R  +S S SD DWEEGT E +G+S S++ 
Sbjct: 545  RSKCLDSDDDVFTSLVAGQPVNIPSVDNITSRIQTSDSASDGDWEEGTIETRGNSSSNNL 604

Query: 530  NAGINPPLNLEEGGISDESEVEWEEGPSCAPKSSLSFPAESEKTVSN--IEEEANLQEAI 587
                NPPL  +E  ISD+SEVEWE+G      SS  FP+ES+   S   +EEEA+LQEAI
Sbjct: 605  ALETNPPL--KEKNISDDSEVEWEDGGGDHENSS--FPSESKMPASRGYMEEEADLQEAI 660

Query: 588  RRSLLDVCIEKPNYALSEHNKCENLGENACDGTWLYDRENNMDDPNFLGESVSQQHESIC 647
            RRSL D+  E  N  LSEH K +   +N        D+E+N        + V+QQ +   
Sbjct: 661  RRSLEDLGGEIFNNTLSEHEKLKISDKNVYKDVGFLDQEDNTGGLILPEKDVTQQDQPFS 720

Query: 648  EYVDGLGKLDTVGGINNSEVIGSLGRELKLYEPRNSDEKEMLINKPFEKDNSYFEQSRQG 707
            E +   GK+D VG  + S+V  S   +L   E  + D  ++L NK +E+D         G
Sbjct: 721  E-ISATGKIDKVGQYDISQVFSSQS-QLAFSEAHDPDNMDILTNKLYERD--------MG 770

Query: 708  ANDG-----ANDGRSLC-------SDAPCEDSGTTMELTEVQLVKGRCLSASAKGDEHLT 755
            +NDG      N   S+C       S AP E      + +E   V+   LS S K    ++
Sbjct: 771  SNDGQPSRALNMEGSVCRGMSSAESAAPLETHVILKQFSETN-VEDMGLSTSTKMRSGIS 829

Query: 756  H---------------EDKKNNCEAETSVLPGDKKNEIEVEMKHDFTAEPSCRTVGTSDT 800
            +               +D +N  EAE SVL  ++K             E  C++V  ++ 
Sbjct: 830  NISKAAWSNVSFASSIDDDRNKVEAEPSVLVNEEKR-----------PETYCQSVKITNP 878

Query: 801  SIPLVKTSGNASIYDTDIEQKSAEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILE 860
            S  +++ S N +I  TD+E K A E+       + KQ+     +   EN+  + +E  L+
Sbjct: 879  STSVMEPSINLAI-GTDVESKLAGEKNSGHLFNEKKQDMEKVVSN--ENLREDFSEVTLQ 935

Query: 861  EEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYM 920
            EE+ IL  E M LG EQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYM
Sbjct: 936  EEILILGQERMNLGSEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYM 995

Query: 921  ELANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALL 980
            ELANLVDGVVTDDSDVFLFGAR+VYKNIFDDRKYVETYFM+DIE++LGLTREKLIRMALL
Sbjct: 996  ELANLVDGVVTDDSDVFLFGARNVYKNIFDDRKYVETYFMKDIERELGLTREKLIRMALL 1055

Query: 981  LGSDYTEGISGIG------IVNAI------------------EVVNAFPEEDGLSKFREW 1016
            LGSDYTEGISGIG      +VNA                    ++      DG S  R+ 
Sbjct: 1056 LGSDYTEGISGIGIVNAIEVVNAFPEEDGLEKFREWIYSPDPTILGKLDVRDGRSMRRKG 1115

Query: 1017 -IESPDPTILGKFDVQTGASSRKRRSSDG---------DKDVNYAKN--------SVGGV 1058
              +S +  ++  F  +   S ++  S+D          DK  N +KN        S   +
Sbjct: 1116 ESDSANNNVVDSFGKKVSESHKEEDSADHTQEIRQIFMDKHRNVSKNWHVPSSFPSEAVI 1175

Query: 1059 SEF-----DESISQFDEDKQSAEYSQNMKKIFM------------------------DKH 1089
            S +     D+S   F   K      +    IF+                        +KH
Sbjct: 1176 SAYMSPQVDKSTEPFTWGKPDLHVLRRQVMIFIICWEKFAWGVQKSDELLLPVLKEYNKH 1235

Query: 1090 -TQLRLEAFYTFNERFAKIRSKRIKKAVKGITGSQSLLLMDDAGQEVSKSRKKRKNNGLE 1148
             TQLRLEAFYTFNERFAKIRS+RIKKA+KGITG QS  +MDD  ++ SKSRKKR     E
Sbjct: 1236 ETQLRLEAFYTFNERFAKIRSRRIKKALKGITGYQSSEMMDDDVKDSSKSRKKRTIGPGE 1295

Query: 1149 NGNNRSQKAPKKAEESV-SGAQNNMEKSSQSQSRERKVLEKFVLAEMENPERLTPAGGGR 1207
            + ++    A K+  E + S   +++EKS+  +SR+R   +  VL E ENP +   A G R
Sbjct: 1296 SVDSEPDAALKREREGLFSDKTDSLEKSTTKRSRKRTAGQP-VLTERENPGQHLQAEGRR 1354

Query: 1208 NANNVFRGNRRGKGQRVGRGRGRRRLCAEQSETS-SSDDI--GSDDTQEYYSEKFEGQQE 1264
              +    G+ RGKG+  GRGRGR R      E S SS D   G DD  E   EK EG QE
Sbjct: 1355 KTHKGQCGDGRGKGRGRGRGRGRGRGKGSGIELSDSSYDYVSGDDDELEVRIEKSEGPQE 1414

Query: 1265 VRRSTRSRKPVDYNVDDPEIADVGKILSNKESSNEEEAKQDSVHGVTG---EASADYSRK 1321
            +RRSTRSRKP +Y +D  ++ DV   +   +  + E A +  + GV G   +AS+  + K
Sbjct: 1415 LRRSTRSRKPANYTLDGFKV-DVDSAVDRGDKQSNESAAELDLFGVIGKSTDASSCLNGK 1473

Query: 1322 KQHRADDP---SIDKDYIERGGGFCIDDQEIGQPSVSPCDDPFLEAEITKDYMKMGGGFC 1378
            +QH+ +D       KDY+E  G  C+ D    +P           A ++KDY+KMGGGFC
Sbjct: 1474 EQHKVEDALPEDFSKDYLE-NGQHCLTDDNGSEPKYPGG------ASVSKDYLKMGGGFC 1526

Query: 1379 HDESETREDQVAAKDPVVTG--ESPSTCFDSSDGVHCDVGLGDSTTSSNSKEATNGLENV 1436
             DESET  DQ AA  P +    E       S      D G G      + K   N +++ 
Sbjct: 1527 MDESETCTDQDAAHSPSMPAFEEMADASNVSGSMEETDRGEGLLPLVCSIKRTLNDMQDG 1586

Query: 1437 GRTDTFDTEPNPVVQNAT--------STDSARNDAGRASRGSLTAMTFLRRKRR 1482
            G+T+  D EP+    NAT        S         +    +L+AM FL+RKRR
Sbjct: 1587 GKTNAHDAEPSTDCLNATDIGDHSEASLCLPETTGSKTIAPTLSAMPFLKRKRR 1640

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296087697|emb|CBI34953.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225452522|ref|XP_002275112.1| PREDICTED: DNA repair protein UVH3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356498232|ref|XP_003517957.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein UVH3-like [Glycine max] Back     alignment and taxonomy information
>gi|297815070|ref|XP_002875418.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297321256|gb|EFH51677.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18405624|ref|NP_566830.1| DNA repair protein UVH3 [Arabidopsis thaliana] gi|56749787|sp|Q9ATY5.1|UVH3_ARATH RecName: Full=DNA repair protein UVH3; AltName: Full=ERCC5 homolog; AltName: Full=RAD2 homolog; Short=AtRAD2; Short=AtUVH3; Short=AtXPG; AltName: Full=UV hypersensitive protein 3; AltName: Full=XPG homolog gi|13649704|gb|AAK37472.1| UV hypersensitive protein [Arabidopsis thaliana] gi|332643872|gb|AEE77393.1| DNA repair protein UVH3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|11994123|dbj|BAB01125.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449446847|ref|XP_004141182.1| PREDICTED: DNA repair protein UVH3-like [Cucumis sativus] gi|449489542|ref|XP_004158342.1| PREDICTED: DNA repair protein UVH3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|414865352|tpg|DAA43909.1| TPA: hypothetical protein ZEAMMB73_723390 [Zea mays] Back     alignment and taxonomy information
>gi|357113521|ref|XP_003558551.1| PREDICTED: uncharacterized protein LOC100824635 [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1484
TAIR|locus:20913431479 UVH3 "ULTRAVIOLET HYPERSENSITI 0.214 0.215 0.548 2.1e-114
UNIPROTKB|F1P2661111 ERCC5 "Uncharacterized protein 0.134 0.180 0.470 5e-42
UNIPROTKB|E1BZY21007 ERCC5 "Uncharacterized protein 0.163 0.241 0.410 6.2e-41
MGI|MGI:1035821170 Ercc5 "excision repair cross-c 0.163 0.206 0.409 6e-39
ZFIN|ZDB-GENE-050327-281010 ercc5 "excision repair cross-c 0.161 0.237 0.376 1.1e-38
UNIPROTKB|I3LQY21562 ERCC5 "Uncharacterized protein 0.107 0.102 0.503 4.1e-38
UNIPROTKB|P287151186 ERCC5 "DNA repair protein comp 0.105 0.131 0.5 5.8e-36
UNIPROTKB|J9P9A31185 BIVM "Uncharacterized protein" 0.111 0.139 0.497 1.4e-35
ASPGD|ASPL00000276561141 AN5216 [Emericella nidulans (t 0.115 0.149 0.505 2.4e-35
UNIPROTKB|F1P9531600 BIVM "Uncharacterized protein" 0.111 0.103 0.497 3.9e-35
TAIR|locus:2091343 UVH3 "ULTRAVIOLET HYPERSENSITIVE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 846 (302.9 bits), Expect = 2.1e-114, Sum P(4) = 2.1e-114
 Identities = 186/339 (54%), Positives = 236/339 (69%)

Query:   744 LSASAKGDEHLT-HEDKKNNCEAETSVLPGDKKNEIEVEMKHDFTAEPSCRTVGTSDTSI 802
             +SA    DE +T   D+K+N + E+S++  DK++    +++   T         + D S 
Sbjct:   790 VSAMPIADEEITGFLDEKDNADGESSIMMDDKRDYSRRKIQSLVTE--------SRDPSR 841

Query:   803 PLVKTSGNASIYDTDIEQKSAEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILEEE 862
              +V+ S    ++DTD + +  EE   + +  +   +T  F  K +     E +E  +EEE
Sbjct:   842 NVVR-SRIGILHDTDSQNERREENNSNEHTFNIDSSTD-FEEKGVP---VEFSEANIEEE 896

Query:   863 MQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL 922
             +++LD E++ LGDEQ+KLERNAESVSSEMFAECQELLQ+FG+PYIIAPMEAEAQCA+ME 
Sbjct:   897 IRVLDQEFVSLGDEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQ 956

Query:   923 ANLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLG 982
             +NLVDG+VTDDSDVFLFGARSVYKNIFDDRKYVETYFM+DIEK+LGL+R+K+IRMA+LLG
Sbjct:   957 SNLVDGIVTDDSDVFLFGARSVYKNIFDDRKYVETYFMKDIEKELGLSRDKIIRMAMLLG 1016

Query:   983 SDYTEGISGIGIVNAIEVVNAFPEEDGLSKFREWIESPDPTILGKFDVQTGAXXXXXXXX 1042
             SDYTEGISGIGIVNAIEVV AFPEEDGL KFREW+ESPDPTILGK D +TG+        
Sbjct:  1017 SDYTEGISGIGIVNAIEVVTAFPEEDGLQKFREWVESPDPTILGKTDAKTGSKVKKRGSA 1076

Query:  1043 XXXXXVNYAKNSVGGVSEFD-ESISQFDEDKQSAEYSQN 1080
                      K  + G S  D E I Q   D Q  + S+N
Sbjct:  1077 SVDN-----KGIISGASTDDTEEIKQIFMD-QHRKVSKN 1109
GO:0003677 "DNA binding" evidence=IEA
GO:0003697 "single-stranded DNA binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0004518 "nuclease activity" evidence=IEA;ISS
GO:0004519 "endonuclease activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006281 "DNA repair" evidence=IEA;ISS
GO:0006289 "nucleotide-excision repair" evidence=IEA
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
GO:0010224 "response to UV-B" evidence=IGI
GO:0009408 "response to heat" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0006486 "protein glycosylation" evidence=RCA
GO:0010213 "non-photoreactive DNA repair" evidence=IMP
UNIPROTKB|F1P266 ERCC5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZY2 ERCC5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:103582 Ercc5 "excision repair cross-complementing rodent repair deficiency, complementation group 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050327-28 ercc5 "excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LQY2 ERCC5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P28715 ERCC5 "DNA repair protein complementing XP-G cells" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9P9A3 BIVM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ASPGD|ASPL0000027656 AN5216 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1P953 BIVM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1484
cd09868249 cd09868, PIN_XPG, PIN domain of Xeroderma pigmento 7e-49
TIGR006001034 TIGR00600, rad2, DNA excision repair protein (rad2 4e-48
cd09856207 cd09856, PIN_FEN1-like, PIN domain of Flap Endonuc 3e-27
PRK03980292 PRK03980, PRK03980, flap endonuclease-1; Provision 8e-26
cd0990497 cd09904, H3TH_XPG, H3TH domain of Xeroderma pigmen 8e-26
TIGR03674338 TIGR03674, fen_arch, flap structure-specific endon 8e-25
PTZ00217393 PTZ00217, PTZ00217, flap endonuclease-1; Provision 1e-24
cd09869233 cd09869, PIN_GEN1, PIN domain of Gap Endonuclease 2e-24
smart0048473 smart00484, XPGI, Xeroderma pigmentosum G I-region 1e-23
pfam0086746 pfam00867, XPG_I, XPG I-region 1e-18
cd09867261 cd09867, PIN_FEN1, PIN domain of Flap Endonuclease 3e-18
cd09870239 cd09870, PIN_YEN1, PIN domain of Yeast Endonucleas 1e-16
COG0258310 COG0258, Exo, 5'-3' exonuclease (including N-termi 5e-15
cd0990052 cd09900, H3TH_XPG-like, H3TH domains of Flap endon 1e-14
cd09857210 cd09857, PIN_EXO1, PIN domain of Exonuclease-1, a 1e-13
cd0989768 cd09897, H3TH_FEN1-XPG-like, H3TH domains of Flap 3e-12
cd00128209 cd00128, PIN_FEN1_EXO1-like, PIN domains of Flap E 6e-11
cd09852120 cd09852, PIN_SF, PIN (PilT N terminus) domain: Sup 9e-09
cd09905108 cd09905, H3TH_GEN1, H3TH domain of Gap Endonucleas 2e-07
cd0990173 cd09901, H3TH_FEN1-like, H3TH domains of Flap endo 2e-05
smart0027936 smart00279, HhH2, Helix-hairpin-helix class 2 (Pol 6e-05
cd09853163 cd09853, PIN_StructSpec-5'-nucleases, PIN domains 2e-04
cd09858215 cd09858, PIN_MKT1, PIN domain of Mkt1: A global re 9e-04
cd0008071 cd00080, H3TH_StructSpec-5'-nucleases, H3TH domain 0.001
>gnl|CDD|189038 cd09868, PIN_XPG, PIN domain of Xeroderma pigmentosum complementation group G (XPG) nuclease, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs Back     alignment and domain information 
 Score =  174 bits (443), Expect = 7e-49
 Identities = 59/96 (61%), Positives = 77/96 (80%)

Query: 875 DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDS 934
            +Q++ ER+A+ ++ EM+ ECQELL++FG+PYI+APMEAEAQCA +    LVDGV+TDDS
Sbjct: 121 SQQQQQERDADEITQEMYDECQELLRLFGIPYIVAPMEAEAQCAILNQLGLVDGVITDDS 180

Query: 935 DVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLT 970
           DVFLFGA+ VYKN F+  KYVE Y  +DIEK+L  T
Sbjct: 181 DVFLFGAKRVYKNFFNGNKYVEYYLAEDIEKELPFT 216

The Xeroderma pigmentosum complementation group G (XPG) nuclease plays a central role in nucleotide excision repair (NER) in cleaving DNA bubble structures or loops. XPG is a member of the structure-specific, 5' nuclease family that catalyzes hydrolysis of DNA duplex-containing nucleic acid structures during DNA replication, repair, and recombination. These nucleases contain a PIN (PilT N terminus) domain with a helical arch/clamp region (I domain). In XPG PIN domains, this arch region can be quite variable and extensive (400 - 800 residues) in length and is required for NER activity and for efficient processing of bubble substrates. Inserted within the PIN domain of these 5' nucleases is a H3TH (helix-3-turn-helix) domain, an atypical helix-hairpin-helix-2-like region. Both the H3TH domain (not included here) and the helical arch/clamp region are involved in DNA binding. Nucleases within this group also have a carboxylate-rich active site that is involved in binding essential divalent metal ion cofactors (Mg2+/Mn2+). Length = 249
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2) Back     alignment and domain information
>gnl|CDD|189026 cd09856, PIN_FEN1-like, PIN domain of Flap Endonuclease-1 (FEN1)-like, structure-specific, divalent-metal-ion dependent, 5' nucleases Back     alignment and domain information
>gnl|CDD|235185 PRK03980, PRK03980, flap endonuclease-1; Provisional Back     alignment and domain information
>gnl|CDD|188624 cd09904, H3TH_XPG, H3TH domain of Xeroderma pigmentosum complementation group G (XPG) nuclease, a structure-specific, divalent-metal-ion dependent, 5' nuclease Back     alignment and domain information
>gnl|CDD|234306 TIGR03674, fen_arch, flap structure-specific endonuclease Back     alignment and domain information
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional Back     alignment and domain information
>gnl|CDD|189039 cd09869, PIN_GEN1, PIN domain of Gap Endonuclease 1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs Back     alignment and domain information
>gnl|CDD|214689 smart00484, XPGI, Xeroderma pigmentosum G I-region Back     alignment and domain information
>gnl|CDD|216163 pfam00867, XPG_I, XPG I-region Back     alignment and domain information
>gnl|CDD|189037 cd09867, PIN_FEN1, PIN domain of Flap Endonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs Back     alignment and domain information
>gnl|CDD|189040 cd09870, PIN_YEN1, PIN domain of Yeast Endonuclease 1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and fungal homologs Back     alignment and domain information
>gnl|CDD|223336 COG0258, Exo, 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|188620 cd09900, H3TH_XPG-like, H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases: FEN1 (archaeal), GEN1, YEN1, and XPG Back     alignment and domain information
>gnl|CDD|189027 cd09857, PIN_EXO1, PIN domain of Exonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs Back     alignment and domain information
>gnl|CDD|188617 cd09897, H3TH_FEN1-XPG-like, H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases Back     alignment and domain information
>gnl|CDD|189020 cd00128, PIN_FEN1_EXO1-like, PIN domains of Flap Endonuclease-1 (FEN1)-like and Exonuclease-1 (EXO1)-like nucleases, structure-specific, divalent-metal-ion dependent, 5' nucleases Back     alignment and domain information
>gnl|CDD|189022 cd09852, PIN_SF, PIN (PilT N terminus) domain: Superfamily Back     alignment and domain information
>gnl|CDD|188625 cd09905, H3TH_GEN1, H3TH domain of Gap Endonuclease 1, a structure-specific, divalent-metal-ion dependent, 5' nuclease Back     alignment and domain information
>gnl|CDD|188621 cd09901, H3TH_FEN1-like, H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases: FEN1 (eukaryotic) and EXO1 Back     alignment and domain information
>gnl|CDD|197623 smart00279, HhH2, Helix-hairpin-helix class 2 (Pol1 family) motifs Back     alignment and domain information
>gnl|CDD|189023 cd09853, PIN_StructSpec-5'-nucleases, PIN domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in DNA replication, repair, and recombination Back     alignment and domain information
>gnl|CDD|189028 cd09858, PIN_MKT1, PIN domain of Mkt1: A global regulator of mRNAs encoding mitochondrial proteins and eukaryotic homologs Back     alignment and domain information
>gnl|CDD|188616 cd00080, H3TH_StructSpec-5'-nucleases, H3TH domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in DNA replication, repair, and recombination Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1484
KOG2520815 consensus 5'-3' exonuclease [Replication, recombin 100.0
TIGR006001034 rad2 DNA excision repair protein (rad2). All prote 100.0
PRK03980292 flap endonuclease-1; Provisional 100.0
PTZ00217393 flap endonuclease-1; Provisional 100.0
TIGR03674338 fen_arch flap structure-specific endonuclease. End 100.0
cd00128316 XPG Xeroderma pigmentosum G N- and I-regions (XPGN 100.0
KOG2519449 consensus 5'-3' exonuclease [Replication, recombin 99.97
KOG2518556 consensus 5'-3' exonuclease [Replication, recombin 99.95
smart00475259 53EXOc 5'-3' exonuclease. 99.9
PF0086794 XPG_I: XPG I-region; InterPro: IPR006086 This entr 99.88
cd00008240 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonucleas 99.87
PRK14976281 5'-3' exonuclease; Provisional 99.87
COG0258310 Exo 5'-3' exonuclease (including N-terminal domain 99.83
TIGR00593 887 pola DNA polymerase I. This family is based on the 99.82
PRK09482256 flap endonuclease-like protein; Provisional 99.82
PRK05755 880 DNA polymerase I; Provisional 99.8
smart0048473 XPGI Xeroderma pigmentosum G I-region. domain in n 99.67
PHA00439286 exonuclease 99.4
cd0008075 HhH2_motif Helix-hairpin-helix class 2 (Pol1 famil 99.26
PHA02567304 rnh RnaseH; Provisional 98.84
smart0027936 HhH2 Helix-hairpin-helix class 2 (Pol1 family) mot 98.67
PF01367101 5_3_exonuc: 5'-3' exonuclease, C-terminal SAM fold 98.66
PF12813246 XPG_I_2: XPG domain containing 98.26
PF02739169 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolv 98.2
TIGR006001034 rad2 DNA excision repair protein (rad2). All prote 95.99
PF14377108 DUF4414: Domain of unknown function (DUF4414) 95.01
COG5366531 Protein involved in propagation of M2 dsRNA satell 93.34
PF1282664 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS 88.15
KOG2044931 consensus 5'-3' exonuclease HKE1/RAT1 [Replication 86.28
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 81.58
>KOG2520 consensus 5'-3' exonuclease [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-44  Score=430.06  Aligned_cols=247  Identities=40%  Similarity=0.641  Sum_probs=205.1

Q ss_pred             hcHHHHHHHHHHhhHHHHhhChhHHHHHhccCCCCHHHHHHHHHHHHHcCCCeeeCcchHHHHHHHHHHcCceeEEEcCC
Q 000457          854 ATEKILEEEMQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDD  933 (1484)
Q Consensus       854 ~s~~~LeEE~q~L~qE~v~lG~Ea~K~kRravsVT~emI~eIKeLLrlfGIPyIVAPYEADAQCAyLaKkGlVDAVITED  933 (1484)
                      ....+.+++.....+-+.    +++...|.+..||.+|+.+||+||+.||||||+||+|||||||.|.+.++||+|||+|
T Consensus       434 ~~e~n~ee~~~~~~el~~----ek~~~~r~~~evt~~m~~e~QElL~~fGIPyI~APmEAEAQCa~Le~~~LvdGiITDD  509 (815)
T KOG2520|consen  434 WDEANSEEEEKLSDELLS----EKYIQSRGADEVTSDMFKELQELLRLFGIPYIIAPMEAEAQCAFLEQLNLVDGIITDD  509 (815)
T ss_pred             hcccchhhhhhhhhHHHH----HHHHHhccCchhHHHHHHHHHHHHHHcCCceecccccHHHHHHHHHHcCCcceeeccc
Confidence            344444444444333332    5677789999999999999999999999999999999999999999999999999999


Q ss_pred             CceecccCCEEEEEccCCCCeEEEEeHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCCCccHHHHHHHHHhcCCchHHHHH
Q 000457          934 SDVFLFGARSVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVNAFPEEDGLSKF 1013 (1484)
Q Consensus       934 SDLLLFG~~kVIRN~fk~~K~VEvydledIeeeLGLTpeQFIDLcILsGcDYiPGVPGIGPKTAlKLLrqFGSlDgLekf 1013 (1484)
                      ||+|+||+++||||||..+++|+.|.+.+|.+.|||++..+|-+|.|+||||+.||+||||++|+++|..|+..++|.+|
T Consensus       510 SDV~LFGg~~VYrn~F~knk~ve~y~~~di~kel~l~R~~lI~lA~LlGsDYt~Gl~giGpV~AlEil~Efp~~~~l~~f  589 (815)
T KOG2520|consen  510 SDVFLFGGTRVYRNFFNKNKYVEKYQLDDIEKELGLDRPNLISLAQLLGSDYTEGLKGIGPVSALEILAEFPGDENLLKF  589 (815)
T ss_pred             ccceeeccchhhHHHhhcCccceeeehHHHHHHHccCchhhHHHHHhcccccccCCCcccchHHHHHHHHcCCcchhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             HHhhhCCCCCccCcccccCCCcccccccCCCCCCcccCCCCccccccccccccccCcc--cccHHHHHHHHHHhhh----
Q 000457         1014 REWIESPDPTILGKFDVQTGASSRKRRSSDGDKDVNYAKNSVGGVSEFDESISQFDED--KQSAEYSQNMKKIFMD---- 1087 (1484)
Q Consensus      1014 rEW~ekp~~~ll~eld~ns~~~fKKK~kav~~~eipw~fPdleVL~~Fl~pvVs~seD--~~s~~~ierLrk~f~~---- 1087 (1484)
                      .+||..-.+... +........+|+|.+.. .+-++-.||+..|+.+|++|.|+.+-+  .|+.++++.||++.+.    
T Consensus       590 ~~w~~~~~~~~~-~~~s~~~~~lrkkl~n~-~~~l~~~fP~~~v~~AYLrP~VD~sk~~f~WG~pdl~~lRef~~~~fgW  667 (815)
T KOG2520|consen  590 KKWVQQTGPADK-EVGSTQQKMLRKKLKNP-KIILPSDFPNPNVIEAYLRPEVDDSKEKFRWGKPDLDILREFMKRLFGW  667 (815)
T ss_pred             HHHHHHhCcccc-ccccHHHHHHHHHhcCc-ccccCcCCCchhHHHHhhCCccCCCcccccCCCCCHHHHHHHHHHHcCC
Confidence            999984333211 11111223445555543 245777899999999999999998854  6999999999987642    


Q ss_pred             ------------------cccccccccccchhhhHhh
Q 000457         1088 ------------------KHTQLRLEAFYTFNERFAK 1106 (1484)
Q Consensus      1088 ------------------k~tQlRIdsFFt~~~~~a~ 1106 (1484)
                                        ..+|+++++||.|..+.+.
T Consensus       668 ~~~kT~~~l~p~~~~~~~~~~~~~~~~~~~~f~~~~~  704 (815)
T KOG2520|consen  668 PDEKTDEELIPVIKRLEKKKTQLKQDRISQFFEDEKT  704 (815)
T ss_pred             CccccchhhhhhHHHHHHHhhhhccccHHHHHHhhhh
Confidence                              2289999999988766653

>TIGR00600 rad2 DNA excision repair protein (rad2) Back     alignment and domain information
>PRK03980 flap endonuclease-1; Provisional Back     alignment and domain information
>PTZ00217 flap endonuclease-1; Provisional Back     alignment and domain information
>TIGR03674 fen_arch flap structure-specific endonuclease Back     alignment and domain information
>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases Back     alignment and domain information
>KOG2519 consensus 5'-3' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>KOG2518 consensus 5'-3' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>smart00475 53EXOc 5'-3' exonuclease Back     alignment and domain information
>PF00867 XPG_I: XPG I-region; InterPro: IPR006086 This entry represents endonucleases that cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment Back     alignment and domain information
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes Back     alignment and domain information
>PRK14976 5'-3' exonuclease; Provisional Back     alignment and domain information
>COG0258 Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00593 pola DNA polymerase I Back     alignment and domain information
>PRK09482 flap endonuclease-like protein; Provisional Back     alignment and domain information
>PRK05755 DNA polymerase I; Provisional Back     alignment and domain information
>smart00484 XPGI Xeroderma pigmentosum G I-region Back     alignment and domain information
>PHA00439 exonuclease Back     alignment and domain information
>cd00080 HhH2_motif Helix-hairpin-helix class 2 (Pol1 family) motif Back     alignment and domain information
>PHA02567 rnh RnaseH; Provisional Back     alignment and domain information
>smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs Back     alignment and domain information
>PF01367 5_3_exonuc: 5'-3' exonuclease, C-terminal SAM fold; InterPro: IPR020045 This entry represents the C-terminal domain of 5' to 3' exonucleases Back     alignment and domain information
>PF12813 XPG_I_2: XPG domain containing Back     alignment and domain information
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities Back     alignment and domain information
>TIGR00600 rad2 DNA excision repair protein (rad2) Back     alignment and domain information
>PF14377 DUF4414: Domain of unknown function (DUF4414) Back     alignment and domain information
>COG5366 Protein involved in propagation of M2 dsRNA satellite of L-A virus [General function prediction only] Back     alignment and domain information
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B Back     alignment and domain information
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1484
1b43_A340 Fen-1 From P. Furiosus Length = 340 2e-17
1mc8_A343 Crystal Structure Of Flap Endonuclease-1 R42e Mutan 2e-16
1a76_A326 Flap Endonuclease-1 From Methanococcus Jannaschii L 2e-15
1ul1_X379 Crystal Structure Of The Human Fen1-Pcna Complex Le 2e-15
3q8k_A341 Crystal Structure Of Human Flap Endonuclease Fen1 ( 7e-15
3q8m_A341 Crystal Structure Of Human Flap Endonuclease Fen1 ( 4e-14
1rxv_A336 Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna 8e-14
2izo_A346 Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex L 4e-13
3ory_A363 Crystal Structure Of Flap Endonuclease 1 From Hyper 1e-09
3qea_Z352 Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) 8e-08
3qe9_Y352 Crystal Structure Of Human Exonuclease 1 Exo1 (D173 6e-07
>pdb|1B43|A Chain A, Fen-1 From P. Furiosus Length = 340 Back     alignment and structure 
Iteration: 1

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 88/154 (57%), Gaps = 15/154 (9%)
Query: 875  DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDS 934
            +E +K  + A  V+  +  + ++LL++ G+P + AP E EAQ AYM     V    + D 
Sbjct: 115  EEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDY 174
Query: 935  DVFLFGARSVYKN--IFDDRK------YVET----YFMQDIEKDLGLTREKLIRMALLLG 982
            D  LFGA  + +N  I   RK      YVE       ++++ K+L LTREKLI +A+L+G
Sbjct: 175  DSLLFGAPRLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVG 234
Query: 983  SDYTE-GISGIGIVNAIEVVNAFPEEDGLSKFRE 1015
            +DY   GI GIG+  A+E+V     +D L+KF++
Sbjct: 235  TDYNPGGIKGIGLKKALEIVRH--SKDPLAKFQK 266
>pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From Pyrococcus Horikoshii Length = 343 Back     alignment and structure
>pdb|1A76|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii Length = 326 Back     alignment and structure
>pdb|1UL1|X Chain X, Crystal Structure Of The Human Fen1-Pcna Complex Length = 379 Back     alignment and structure
>pdb|3Q8K|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In Complex With Product 5'-Flap Dna, Sm3+, And K+ Length = 341 Back     alignment and structure
>pdb|3Q8M|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a) In Complex With Substrate 5'-Flap Dna And K+ Length = 341 Back     alignment and structure
>pdb|1RXV|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna Length = 336 Back     alignment and structure
>pdb|2IZO|A Chain A, Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex Length = 346 Back     alignment and structure
>pdb|3ORY|A Chain A, Crystal Structure Of Flap Endonuclease 1 From Hyperthermophilic Archaeon Desulfurococcus Amylolyticus Length = 363 Back     alignment and structure
>pdb|3QEA|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) In Complex With Dna (Complex Ii) Length = 352 Back     alignment and structure
>pdb|3QE9|Y Chain Y, Crystal Structure Of Human Exonuclease 1 Exo1 (D173a) In Complex With Dna (Complex I) Length = 352 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1484
d1rxwa2217 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuc 6e-26
d1a77a2207 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuc 2e-23
d1ul1x2216 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuc 5e-20
d1b43a2219 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuc 6e-20
d1ul1x1140 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nu 3e-12
d1b43a1120 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nu 2e-09
d1rxwa1105 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nu 2e-07
d1a77a1108 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nu 8e-06
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 217 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: 5' to 3' exonuclease catalytic domain
domain: Flap endonuclease-1 (Fen-1 nuclease)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  105 bits (262), Expect = 6e-26
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 2/117 (1%)

Query: 863 MQILDHEYMYLGDEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL 922
            ++          + KK  + A  V   +    + LL   G+P++ AP E EAQ AYM  
Sbjct: 100 EEMWIAALQAGDKDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAA 159

Query: 923 ANLVDGVVTDDSDVFLFGARSVYKNIFDD--RKYVETYFMQDIEKDLGLTREKLIRM 977
              V+   + D D  LFG+  + +N+     RK        D++ ++ +    L R+
Sbjct: 160 KGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRL 216
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 207 Back     information, alignment and structure
>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Length = 216 Back     information, alignment and structure
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 219 Back     information, alignment and structure
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 120 Back     information, alignment and structure
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 105 Back     information, alignment and structure
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 108 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1484
d1rxwa2217 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Arc 99.85
d1a77a2207 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Met 99.84
d1ul1x2216 Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo 99.84
d1b43a1120 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyr 99.83
d1b43a2219 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyr 99.81
d1ul1x1140 Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo 99.75
d1a77a1108 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Met 99.67
d1rxwa1105 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Arc 99.61
d1xo1a1105 T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726] 98.8
d1cmwa1116 5' to 3' exonuclease domain of DNA polymerase Taq 98.6
d1cmwa2164 5' to 3' exonuclease domain of DNA polymerase Taq 97.87
d1xo1a2167 T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726] 97.24
d1tfra2169 T4 RNase H {Bacteriophage T4 [TaxId: 10665]} 96.94
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 89.45
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 86.14
d2a1jb178 DNA excision repair protein ERCC-1 {Human (Homo sa 85.39
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 83.76
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 83.36
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: 5' to 3' exonuclease catalytic domain
domain: Flap endonuclease-1 (Fen-1 nuclease)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.85  E-value=9.3e-21  Score=153.05  Aligned_cols=78  Identities=31%  Similarity=0.467  Sum_probs=72.8

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCEEEEECCCCCEECCCCCEEEEECCCCC
Q ss_conf             049999760677999989999999999099726176408899899987195669980897212135777999724899
Q 000457          875 DEQKKLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARSVYKNIFDDR  952 (1484)
Q Consensus       875 ~EakK~kRrAvsVT~eMI~eIKeLLKlfGIPYIVAPYEADAQCAyLaKkGlVDAVITEDSDLLLFGakkVIRNLf~~~  952 (1484)
                      .+...+..++..++++++..++++|+.+|||||+||||||||||||++.|+||+|+|+|||+|+|||++|||+++..+
T Consensus       112 ~~~~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~Ap~EAeaqcA~L~~~g~vd~v~seDsD~l~fG~~~vir~l~~~~  189 (217)
T d1rxwa2         112 KDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITG  189 (217)
T ss_dssp             TTHHHHHHHHCCCCHHHHHHHHHHHHHTTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESCCC--
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCEEEEEECCCCEEEECCCEEEEECCCCC
T ss_conf             889998875424988999999999987595099667238999999996797689992562455207878888456445
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]} Back     information, alignment and structure
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1cmwa2 c.120.1.2 (A:10-173) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1xo1a2 c.120.1.2 (A:19-185) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]} Back     information, alignment and structure
>d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure