Citrus Sinensis ID: 000474

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470
MQGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVPSQASSADKDNDSIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSPPSSVEIPTVNSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKSKASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLWPRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGMKKEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSEDEELDISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGDSAEDSTTVPSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGVRGGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNSDSASRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS
cccHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHcHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccEEEcccccccccccccccccccccccEEEEEEEcccccccccccccEEEEcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccEEEEEccEEccccccHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHccccccccccHHHHcccccccEEEEEEccHHHHHHHHHHHcccccccEEEEEEccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHHccccccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccccccHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccc
ccHHHHHHHHHHHccHHHHHHHHHHcHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHcccccccccccHHcccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHccccHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHcccHcccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccEEEEEEccccccccccccccEEEEccHHcHHHHHHHcccccEccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccEccccccccccccccccHHcccccccccccccccccccccccccccccHcHHHHHHccccccccccccccHHHcccccccccccccccccEEcccccccccccccccccccccccccHHHHccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccEEEEEEcccEcccccHHHHHHHHHHHccccHHHccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccccHHHHHHHHHHHHHHHHHHccHEEccccccHHHHHHHHHcccEEEccccEEEEEccccccHHHHHccccccccccccccccccccccccccEEEEEcHHHHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHHHHHHHcccccEEEEcccccccEEccccccccccccccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEccccHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcEEccccHHHccEEEEccccccEEEccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHccccccccHHHHHHHcccccccccccHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHccccEEEEEcccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHHHHHHHcccccccc
MQGLIRLLStcasgsplcaKTLLHLGISGILKDilsgsgvsansavppalsrpaeQIFEIVNLAnellpplpqgtislpsssnmfvkgpvvrkspasssgkqddtngnasEVSAREKLLSDQPELLQQFGMDLLPVLIQIYgssvnspvrhKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGvlawkdphvlipSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILagntntvpsqassadkdndsipgssrsrryrrrsgnanpecnsseesknpvsvnvgsppssveiptvnsnlrSAVSASAKAFkekyfpsdpgaaevgvtDHLLHIKNLCMKLNagvddqrtkakgkskasgsrladisatKEEYLIGVISEMLAElstgdgvstfEFIGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVAlpnsldagdvapMTVLVQKLQNALSSLErfpvvlshsarsstgsarlssglsalsqpFKLRLCRAqgdkslrdyssnvvlidplasLAAVEEFLWprvqrnesgqkpsasvgnsesgtaptgagasspststpassalrhssrsrlsvnigdgmkkepsqekgtssskgkgKAVLKSAQeevrgpqtrNAARRRAALDKdaqmkqangdsssedeeldispveiddalviedddisddedddhedvlkddslplclsdkvhdvklgdsaedsttvpsasdsqnnpasgsssrgatgrgsdsadfrggnsygsrGAMSFAAAAMAGLgsangrgvrggrdrhgrplfgssneppkliftVGGKQLNRHLTIYQAIQRQLvldedederfggsdfissdgsrlwndIYTITYQradsqadrmsagvsssatpskssksgsasnsnsdsaSRMSLLDSilqgelpcdleksnptYTILALLRVLEGLNQLAPRLRAQTVCDSyaegkissldelsgtgvrvpyeefinskltPKLARQIQDALALcsgslpswcyqltkacpflfpfetrrqYFYSTAFGLSRALYRLQQqqgadghgsvnereirvgrlerqkVRVSRNRILDSAAKVMEMYSSQKAVLEVEyfgevgtglgptlEFYTLLSRDLQRVGLAMwrsnsssenpsmeidgdegksgktsnisgdlvhaplglfprpwppsadaseggqfSKVIEYFRLLGRVMAKALqdgrlldlpfsTAFYKLVLgheldlhdiipfdAEFGKILQELHVIVCRKqhlesmtsdnceevvdlrfrgapiedlcldftlpgypdyilkpgdenvdinnLEEYISLVVDATVKTGIMRQMEAFRAGFnqvfditslqiftphelDHLLCGRRELWEPAALAEhikfdhgytakspAIVNLLEIMGEFTPDQQRAFCQFvtgaprlppgglavlnpkltivrkhsstapntasngtgpsesadddlpsvmtcanylklppystkeiMYKKLVYAISegqgsfdls
MQGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVrkspasssgkqddtngnaSEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTntvpsqassadkdndsipgssrsrryrrrsgnanpecnsseesknpvsVNVGSPPSsveiptvnsnLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDqrtkakgkskasgsrladisatkEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLWPRVQRnesgqkpsasvgnSESGTAPtgagasspststpassalrhssrsrlsvnigdgmkkepsqekgtssskgkgkavlksaqeevrgpqtrnaarrraaldkdaqmkqangdsssedeeldiSPVEIDDALVIEDDDISDDEDDDHEdvlkddslplclSDKVHDVKLGdsaedsttvpsasdsqnnpasgsssrgatgrgsdSADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGVRGGRDRHGrplfgssneppkLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFggsdfissdgsrlwNDIYTITYQRADSQADRMSAGVsssatpskssksgsasnsnsdSASRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEgkissldelsgtgvRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQqgadghgsvnereirvgrlerqkvrvsrnriLDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWrsnsssenpsmeiDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEhikfdhgytaKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHsstapntasngtgpsesadddlPSVMTCANYLKLPPYSTKEIMYKKLVYAISegqgsfdls
MQGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVPSQASSADKDNDSIPGssrsrryrrrsGNANPECNSSEESKnpvsvnvgsppssvEIPTVNSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTkakgkskasgsRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHsarsstgsarlssglsalsQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLWPRVQRNESGQKPSASVGNSEsgtaptgagasspststpassalrhssrsrlsVNIGDGMKKEPSQEkgtssskgkgkAVLKSAQEEVRGPQTrnaarrraaLDKDAQMKQANGdsssedeeldISPveiddalviedddisddedddhedvlkddslPLCLSDKVHDVKLGDSAEDSTTVPSASDSQNNPasgsssrgatgrgsdsaDFRGGNSYgsrgamsfaaaamaglgsangrgvrggrdrhgrPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERfggsdfissdgsRLWNDIYTITYQRADSQADRMsagvsssatpskssksgsasnsnsdsasrmsLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS
***LIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV**************EQIFEIVNLANELL********************************************************LLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGN*****************************************************************************************AAEVGVTDHLLHIKNLCMKLNAG************************TKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVL***********************FKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLWPR*****************************************************************************************************************************************************************************************************************************************************************LIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQ********************************************ILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQ***************************V*RNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMW******************************VHAPLGLF**************QFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIV***************************VMTCANYLKLPPYSTKEIMYKKLVYAIS*********
MQGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGV***********RPAEQIFEIVNLANELLPPLPQG*******************************************LLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQ************************************************************************************************************KNLCMKLN***********************ISATKEEYLIGVISEMLAEL***DGVSTFEFIGSGVVAALLNYFSCGY**********KLRQQALKRFKSFI***************MTVLVQKLQNALSSLERFPVV***********************PFKLRLCRAQ*****RDYSSNVVLIDPLASLAAVEEFLW********************************************************************************************************************************************************************************************************************************************************************IFTVGGKQLNRHLTIYQAIQ*************************LWNDIYTITYQR****************************************LDS*LQ***********PTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRA****************************QKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSM*************NISGDLVHAPLGLFPRPWPP*********FSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESM*SDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS
MQGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGP************************AREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNT*******************************************************VEIPTVNSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDD*****************DISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVL****************LSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLWPRVQRN********************************************LSVNIGDG****************************************************************DISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGD**********************************ADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGVRGGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQRAD***********************************MSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRL***********VNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWR*********************TSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHS******************DDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS
MQGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVK**********************SEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILA***************************************************************PTVNSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKSKASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHSA*******R****LSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLWPRVQR************************************************************************************************************************PVEIDDALVIEDD*********HEDVLKDDSLPLCLSDKVHDVKLGD**********************************************************************************NEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDE***************GSRLWNDIYTITYQRAD**********************************RMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRA*******************EIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGT*PSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQ******
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SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQGLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVNLANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQPELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFLAGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVPSQASSADKDNDSIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSPPSSVEIPTVNSNLRSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKSKASGSRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGYKERMSEANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHSARSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLWPRVQRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGMKKEPSQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSEDEELDISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGDSAEDSTTVPSASDSQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGVRGGRDRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNSDSASRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1470 2.2.26 [Sep-21-2011]
Q6WWW41888 E3 ubiquitin-protein liga yes no 0.988 0.769 0.750 0.0
Q9LYZ71502 E3 ubiquitin-protein liga no no 0.419 0.410 0.455 1e-149
F1RCR62026 E3 ubiquitin-protein liga yes no 0.425 0.308 0.384 1e-121
E1B7Q71992 E3 ubiquitin-protein liga yes no 0.431 0.318 0.386 1e-120
Q146691992 E3 ubiquitin-protein liga yes no 0.431 0.318 0.386 1e-120
F1LP642025 E3 ubiquitin-protein liga yes no 0.431 0.313 0.385 1e-120
G5E8702025 E3 ubiquitin-protein liga yes no 0.431 0.313 0.384 1e-119
B4F6W92056 E3 ubiquitin-protein liga yes no 0.431 0.308 0.376 1e-117
P332021483 Ubiquitin fusion degradat yes no 0.327 0.325 0.378 3e-91
Q104351647 Probable ubiquitin fusion yes no 0.309 0.276 0.380 4e-86
>sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1 Back     alignment and function desciption
 Score = 2069 bits (5361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1103/1470 (75%), Positives = 1246/1470 (84%), Gaps = 17/1470 (1%)

Query: 3    GLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVN 62
            GLIRLLSTCASGSPL  +TLL LGIS ILKDIL GSGVSAN++V PALSRPA+QI+EIVN
Sbjct: 434  GLIRLLSTCASGSPLGFRTLLLLGISSILKDILLGSGVSANASVSPALSRPADQIYEIVN 493

Query: 63   LANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQ 122
            LANELLPPLP+G ISLP+S+N  VKG   +KS  S+SGKQ+D      ++S REKLL DQ
Sbjct: 494  LANELLPPLPEGVISLPTSTNALVKGSCQKKSSPSTSGKQEDI----LKISPREKLLGDQ 549

Query: 123  PELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFL 182
            PELLQQFG+DLLPVL+QIYGSSVN  +RHKCLSVIGKLMYFSS+EMIQSL+  TNISSFL
Sbjct: 550  PELLQQFGLDLLPVLVQIYGSSVNGTIRHKCLSVIGKLMYFSSSEMIQSLIGDTNISSFL 609

Query: 183  AGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVPSQAS 242
            AGVLAWKDP VL+P+LQ+AEILMEKLP TFSK+FVREGVVHAVDQL+L G     PS AS
Sbjct: 610  AGVLAWKDPQVLVPALQVAEILMEKLPETFSKVFVREGVVHAVDQLVLVGK----PSHAS 665

Query: 243  SADKDNDSIPGSSRSRRYRRRSGNANPECNSSEESKNPVSVNVGSPPSSVEIPTVNSNLR 302
              DKDND +PGS+RSRRYRRRS NAN + N SEE KNP S+ +G+  +S++ PT +  LR
Sbjct: 666  PTDKDNDCVPGSARSRRYRRRSSNANSDGNQSEEPKNPASLTIGANHNSLDTPTASFMLR 725

Query: 303  SAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKSKASGS 362
              VS+ AKAFK+KYFPSD G  +VGVTD LLH+KNLC KL AG+DD + K KGKSKASG 
Sbjct: 726  ETVSSCAKAFKDKYFPSDGGDVDVGVTDDLLHLKNLCTKLTAGIDDHKVKGKGKSKASGP 785

Query: 363  RLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGY--KERMSE 420
             L D SA+KEEYLIGVISE+L E+S GDGVSTFEFIGSGVVAALLNYFSCGY  KE++SE
Sbjct: 786  FLGDFSASKEEYLIGVISEILGEISKGDGVSTFEFIGSGVVAALLNYFSCGYFSKEKISE 845

Query: 421  ANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHSAR 480
             N+ KLRQ+ L+RFK+F+ VALP   + G V PMTVL+QKLQNALSSLERFPVVLSH +R
Sbjct: 846  LNLPKLRQEGLRRFKAFLEVALPFDGNEGKVPPMTVLIQKLQNALSSLERFPVVLSHPSR 905

Query: 481  SSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLWPRVQ 540
            S +GSARLSSGLSAL+ P KLRLCRA G+K+LRDYSSN+VLIDPLASLAAVEEFLWPRVQ
Sbjct: 906  SLSGSARLSSGLSALAHPLKLRLCRASGEKTLRDYSSNIVLIDPLASLAAVEEFLWPRVQ 965

Query: 541  RNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGMKKEPS 600
            R+ES  KP+A +GN+E GT P+GAG SSPS+STPAS+  RHSSRSR ++NIGD  KK+P 
Sbjct: 966  RSESALKPAAPIGNTEPGTLPSGAGVSSPSSSTPASTTRRHSSRSRSAINIGDTSKKDPV 1025

Query: 601  QEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSEDEELDI 660
             EKGTSSSKGKGK V+K AQ + +GPQTR+ A++RA LDKD QMK A+GDSSSEDEEL+I
Sbjct: 1026 HEKGTSSSKGKGKGVMKPAQAD-KGPQTRSNAQKRAVLDKDTQMKPASGDSSSEDEELEI 1084

Query: 661  SPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGDSAEDSTTVPSAS 720
            SPV+IDDALVIE+DDISDDEDDD+EDV  DDSLP+C  DKVHDVKL DS +D     + S
Sbjct: 1085 SPVDIDDALVIEEDDISDDEDDDNEDV-LDDSLPMCTPDKVHDVKLADSVDDDGL--ATS 1141

Query: 721  DSQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGVRGGRD 780
              Q NPASG +S  A  R SDS D   GNSYGSRGA+SFAAAAMAGLG+A+GRG+RG RD
Sbjct: 1142 GRQMNPASGGTSGAAAARASDSIDTGIGNSYGSRGALSFAAAAMAGLGAASGRGIRGSRD 1201

Query: 781  RHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGS 840
             HGR L  SS+EP KLIFT  GKQL+RHLTIYQA+QRQL+LDED+D+RFGGSD +SSDGS
Sbjct: 1202 LHGRTLNRSSDEPSKLIFTAAGKQLSRHLTIYQAVQRQLMLDEDDDDRFGGSDLVSSDGS 1261

Query: 841  RLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNSDSASRMSLLDSILQG 900
            R +NDIYTI YQR DSQ +R+S G +SS TPSKS+KS + ++S    + R SLLDSILQG
Sbjct: 1262 R-FNDIYTIMYQRPDSQVNRLSVGGASSTTPSKSTKSATTNSSVESQSHRASLLDSILQG 1320

Query: 901  ELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVP 960
            ELPCDLEKSN TY +LALLRVLEGLNQL PRLRAQT+ D +AEGKI+SLD+LS T  +VP
Sbjct: 1321 ELPCDLEKSNSTYNVLALLRVLEGLNQLCPRLRAQTLSDRFAEGKITSLDDLSTTAAKVP 1380

Query: 961  YEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLS 1020
             +EF+NSKLTPKLARQIQDALALCSGSLPSWCYQLT+ACPFLFPF+TRRQYFYSTAFGLS
Sbjct: 1381 LDEFVNSKLTPKLARQIQDALALCSGSLPSWCYQLTRACPFLFPFQTRRQYFYSTAFGLS 1440

Query: 1021 RALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEV 1080
            RAL RLQQQQGADG GS NERE+R+GRL+RQKVRVSRNRILDSAAKVMEMYSSQKAVLEV
Sbjct: 1441 RALNRLQQQQGADGSGSTNEREMRIGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEV 1500

Query: 1081 EYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISG 1140
            EYFGEVGTGLGPTLEFYTLLS DLQ+  L MWRS SS +  SM+I  DE + GK S  + 
Sbjct: 1501 EYFGEVGTGLGPTLEFYTLLSHDLQKASLGMWRS-SSGDKVSMQIGRDEIEDGKPSAANR 1559

Query: 1141 DLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYK 1200
            D+V APLGLFPRPWP +AD SEGGQF KVIEYFRLLGRVMAKALQDGRLLD+P STAFYK
Sbjct: 1560 DIVLAPLGLFPRPWPSTADISEGGQFHKVIEYFRLLGRVMAKALQDGRLLDVPLSTAFYK 1619

Query: 1201 LVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDL 1260
            L+LG ELDLHDI+ FDAE GK LQEL V+V RK +LE +  DN   + DL  RG  IEDL
Sbjct: 1620 LILGQELDLHDIVLFDAELGKTLQELRVVVARKHYLEGVGGDNSSTISDLCLRGCRIEDL 1679

Query: 1261 CLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDIT 1320
             L+FTLPGYP+YIL+ GDE VDI NLEEYISLVVDATVK G+ RQ+EAFR+GFNQVFDIT
Sbjct: 1680 SLEFTLPGYPEYILRSGDEIVDITNLEEYISLVVDATVKRGVTRQIEAFRSGFNQVFDIT 1739

Query: 1321 SLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRA 1380
            SLQIFTP ELD+LLCGRRELWE   LAEHIKFDHGY AKSPAI+NLLEIMGE T DQQRA
Sbjct: 1740 SLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRA 1799

Query: 1381 FCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANY 1440
            FCQFVTGAPRLPPGGLAVLNPKLTIVRKHSST+ + A+NG G SE+ADDDLPSVMTCANY
Sbjct: 1800 FCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAAANGAGASETADDDLPSVMTCANY 1858

Query: 1441 LKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1470
            LKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1859 LKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888
Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. Involved in the repression of endoreduplication process and the cell morphogenesis in the trichomes.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q9LYZ7|UPL4_ARATH E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=1 SV=1 Back     alignment and function description
>sp|F1RCR6|TRIPC_DANRE E3 ubiquitin-protein ligase TRIP12 OS=Danio rerio GN=trip12 PE=2 SV=1 Back     alignment and function description
>sp|E1B7Q7|TRIPC_BOVIN E3 ubiquitin-protein ligase TRIP12 OS=Bos taurus GN=TRIP12 PE=2 SV=2 Back     alignment and function description
>sp|Q14669|TRIPC_HUMAN E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1 Back     alignment and function description
>sp|F1LP64|TRIPC_RAT E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus GN=Trip12 PE=2 SV=1 Back     alignment and function description
>sp|G5E870|TRIPC_MOUSE E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus GN=Trip12 PE=1 SV=1 Back     alignment and function description
>sp|B4F6W9|TRIPC_XENTR E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis GN=trip12 PE=2 SV=1 Back     alignment and function description
>sp|P33202|UFD4_YEAST Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD4 PE=1 SV=1 Back     alignment and function description
>sp|Q10435|YDE1_SCHPO Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.01c PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1470
255579971 1899 hect ubiquitin-protein ligase, putative 0.994 0.769 0.827 0.0
225428013 1896 PREDICTED: E3 ubiquitin-protein ligase U 0.995 0.771 0.824 0.0
225428015 1814 PREDICTED: E3 ubiquitin-protein ligase U 0.980 0.794 0.812 0.0
356507840 1891 PREDICTED: E3 ubiquitin-protein ligase U 0.996 0.774 0.789 0.0
356544882 1877 PREDICTED: E3 ubiquitin-protein ligase U 0.987 0.773 0.795 0.0
356538640 1872 PREDICTED: E3 ubiquitin-protein ligase U 0.986 0.774 0.790 0.0
356516547 1895 PREDICTED: E3 ubiquitin-protein ligase U 0.996 0.773 0.773 0.0
449458610 1892 PREDICTED: E3 ubiquitin-protein ligase U 0.995 0.773 0.755 0.0
357473823 1881 E3 ubiquitin-protein ligase UPL3 [Medica 0.988 0.772 0.766 0.0
297801930 1884 hypothetical protein ARALYDRAFT_912310 [ 0.988 0.771 0.757 0.0
>gi|255579971|ref|XP_002530820.1| hect ubiquitin-protein ligase, putative [Ricinus communis] gi|223529612|gb|EEF31560.1| hect ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 2326 bits (6027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1222/1477 (82%), Positives = 1323/1477 (89%), Gaps = 15/1477 (1%)

Query: 3    GLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVN 62
            GLIRLLST ASGSPL AKTLL L ISGILKDILSGSGVSANS+VPPALSRPAEQIFEIVN
Sbjct: 429  GLIRLLSTFASGSPLGAKTLLLLEISGILKDILSGSGVSANSSVPPALSRPAEQIFEIVN 488

Query: 63   LANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQ 122
            LANELLPPLPQGTISLP+SSN+FVKGPVV+KSP+SSSGKQDD NGN  EVSAREKLL DQ
Sbjct: 489  LANELLPPLPQGTISLPASSNVFVKGPVVKKSPSSSSGKQDDLNGNVPEVSAREKLLKDQ 548

Query: 123  PELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFL 182
            PELLQQFGMDLLPVL+QIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLS+TNISSFL
Sbjct: 549  PELLQQFGMDLLPVLLQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSITNISSFL 608

Query: 183  AGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVPSQAS 242
            AGVLAWKDPHVL+P+LQIAEILMEKLPGTFSKMFVREGVVHA+DQL+LAGN +T P+QA 
Sbjct: 609  AGVLAWKDPHVLVPALQIAEILMEKLPGTFSKMFVREGVVHAIDQLVLAGNPSTTPTQAP 668

Query: 243  SADKDNDSIPGSSRSRRYRRRS-GNANPECNSSEESKNPVSVNVGSPPSSVEIPTVNSNL 301
            S +KDND + G+S   R  +R  GN+N E +  EES++P+  NVGSPPSSVEIPTVNS+L
Sbjct: 669  STEKDNDYVSGTSSRSRRYKRRSGNSNAEGSLLEESRSPIPTNVGSPPSSVEIPTVNSSL 728

Query: 302  RSAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTKAKGKSKASG 361
            R AVS  AK+FK+KYFPSDPGA+EVGVTD LLH+KNLCMKLN GVDDQ+TKAKGKSKAS 
Sbjct: 729  RMAVSTCAKSFKDKYFPSDPGASEVGVTDDLLHLKNLCMKLNVGVDDQKTKAKGKSKASE 788

Query: 362  SRLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGY--KERMS 419
            SR  D S  KEEYLIGVIS+MLAEL  GDGVSTFEFIGSGVVAALLNYFSCGY  KER+S
Sbjct: 789  SRGIDGSINKEEYLIGVISDMLAELRKGDGVSTFEFIGSGVVAALLNYFSCGYFSKERIS 848

Query: 420  EANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHSA 479
            EAN+ KLRQQAL+RFK F+A++LP S +AG  APM VLVQKLQNALSSLERFPVVLSHS+
Sbjct: 849  EANLSKLRQQALRRFKLFVALSLPYSTNAGSAAPMAVLVQKLQNALSSLERFPVVLSHSS 908

Query: 480  RSSTGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLWPRV 539
            RSS GSARLSSGLSALSQPFKLRLCRAQG+KSLRDYSSNVVLIDPLASLAAVEEFLWPRV
Sbjct: 909  RSSGGSARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAVEEFLWPRV 968

Query: 540  QRNESGQKPSASVGNSESGTAPTGAGASSPSTSTPASSALRHSSRSRLSVNIGDGMKKEP 599
            QR ESGQKPSASVGNSESGT P GAGA SPS STP+++    S     SVNI D  +KEP
Sbjct: 969  QRGESGQKPSASVGNSESGTTPAGAGALSPSASTPSTTRRHSSRSRS-SVNI-DAARKEP 1026

Query: 600  SQEKGTSSSKGKGKAVLKSAQEEVRGPQTRNAARRRAALDKDAQMKQANGDSSSEDEELD 659
             QEK TSSSKGKGKAV K AQEE +GPQTRN ARRRAALDKDAQMK  NGDSSSEDEELD
Sbjct: 1027 LQEKSTSSSKGKGKAVFKPAQEEAKGPQTRNVARRRAALDKDAQMKSVNGDSSSEDEELD 1086

Query: 660  ISPVEIDDALVIEDDDISDDEDDDHEDVLKDDSLPLCLSDKVHDVKLGDSAEDSTTVPSA 719
            ISPVEIDDALVIEDDDISDDEDDDHED+L+DD LP+C+ +KVHDVKLGD+ EDS+  P+ 
Sbjct: 1087 ISPVEIDDALVIEDDDISDDEDDDHEDMLRDDPLPVCMPEKVHDVKLGDAPEDSSGAPAT 1146

Query: 720  SDSQNNPASGSSSRGATGRGSDSADFRGGNSYGSRGAMSFAAAAMAGLGSANGRGVRGGR 779
            SDSQ NPASGSSSR AT RGS+S DFRGG+SYGSRGAMSFAAAAMAGL +ANGRG+RGGR
Sbjct: 1147 SDSQTNPASGSSSRAATVRGSESTDFRGGSSYGSRGAMSFAAAAMAGLATANGRGIRGGR 1206

Query: 780  DRHGRPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDG 839
            DR GRPL G S++PPKLIFT GGKQLNRHLTIYQAIQRQLVLDED+D+R+ GSDFISSDG
Sbjct: 1207 DRQGRPLLGGSSDPPKLIFTAGGKQLNRHLTIYQAIQRQLVLDEDDDDRYAGSDFISSDG 1266

Query: 840  SRLWNDIYTITYQRADSQADRMSAGVSSSATPSKSSKSGSASNSNSDSA-SRMSLLDSIL 898
            SRLW+DIYTITYQRAD Q DR+S G SSS T  KS+K+GS   SNSD    +MSLLDSIL
Sbjct: 1267 SRLWSDIYTITYQRADGQPDRVSVGGSSSTT-LKSTKTGS---SNSDGQLHQMSLLDSIL 1322

Query: 899  QGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVR 958
            QGELPCDLEKSNPTY ILALLRVL+GLNQLAPRLRAQ   D++AEG+IS+LD+LS T  R
Sbjct: 1323 QGELPCDLEKSNPTYNILALLRVLDGLNQLAPRLRAQLFSDNFAEGQISNLDDLSATSSR 1382

Query: 959  VPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFG 1018
            VP EEF+NSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFG
Sbjct: 1383 VPAEEFVNSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFG 1442

Query: 1019 LSRALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVL 1078
            LSRALYRLQQQQGADGHGS NERE+RVGRL+RQKVRVSRNRILDSAAKVMEMYSSQKAVL
Sbjct: 1443 LSRALYRLQQQQGADGHGSANEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVL 1502

Query: 1079 EVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNI 1138
            EVEYFGEVGTGLGPTLEFYTLLS DLQ+V L MWRSNSSS+ PSMEID D  K+GK +N 
Sbjct: 1503 EVEYFGEVGTGLGPTLEFYTLLSHDLQKVVLGMWRSNSSSDKPSMEIDEDGNKNGKVNNC 1562

Query: 1139 S----GDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPF 1194
            S     D+V APLGLFPRPWPPSADASEG QF K +EYFRL+GRVMAKALQDGRLLDLP 
Sbjct: 1563 SDAMGADVVQAPLGLFPRPWPPSADASEGSQFYKAVEYFRLVGRVMAKALQDGRLLDLPL 1622

Query: 1195 STAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRG 1254
            STAFYKLVL  ELDL+DI+ FDAEFGK+LQELH +VCRK+ LES  +DN + + DLRFRG
Sbjct: 1623 STAFYKLVLNQELDLYDILSFDAEFGKVLQELHALVCRKRFLESSGTDNLDAISDLRFRG 1682

Query: 1255 APIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFN 1314
              IEDLCLDFTLPGYPDYILKPGDE VD NNL+EYISLVVDATVK+GIMRQMEAFRAGFN
Sbjct: 1683 TLIEDLCLDFTLPGYPDYILKPGDETVDRNNLDEYISLVVDATVKSGIMRQMEAFRAGFN 1742

Query: 1315 QVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFT 1374
            QVFDI+SLQIF+P ELD+LLCGRRELWEP  L +HIKFDHGYTAKSPAI+NLLEIMGEFT
Sbjct: 1743 QVFDISSLQIFSPQELDYLLCGRRELWEPETLVDHIKFDHGYTAKSPAIINLLEIMGEFT 1802

Query: 1375 PDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPN-TASNGTGPSESADDDLPS 1433
            P+QQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSS+A N  A+NGTGPSESADDDLPS
Sbjct: 1803 PEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSSAGNAAATNGTGPSESADDDLPS 1862

Query: 1434 VMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1470
            VMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1863 VMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1899

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225428013|ref|XP_002278408.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225428015|ref|XP_002278452.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356507840|ref|XP_003522671.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max] Back     alignment and taxonomy information
>gi|356544882|ref|XP_003540876.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max] Back     alignment and taxonomy information
>gi|356538640|ref|XP_003537809.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max] Back     alignment and taxonomy information
>gi|356516547|ref|XP_003526955.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max] Back     alignment and taxonomy information
>gi|449458610|ref|XP_004147040.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Cucumis sativus] gi|449489652|ref|XP_004158376.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357473823|ref|XP_003607196.1| E3 ubiquitin-protein ligase UPL3 [Medicago truncatula] gi|355508251|gb|AES89393.1| E3 ubiquitin-protein ligase UPL3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297801930|ref|XP_002868849.1| hypothetical protein ARALYDRAFT_912310 [Arabidopsis lyrata subsp. lyrata] gi|297314685|gb|EFH45108.1| hypothetical protein ARALYDRAFT_912310 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1470
TAIR|locus:21212241888 KAK "AT4G38600" [Arabidopsis t 0.988 0.769 0.634 0.0
UNIPROTKB|Q0E4T3718 Os02g0101700 "Os02g0101700 pro 0.459 0.940 0.702 4.2e-253
TAIR|locus:21513061502 UPL4 "AT5G02880" [Arabidopsis 0.216 0.211 0.552 8.4e-180
DICTYBASE|DDB_G02872211898 DDB_G0287221 "armadillo repeat 0.212 0.164 0.420 7.3e-145
UNIPROTKB|A8I5Z4508 CHLREDRAFT_113116 "Predicted p 0.336 0.974 0.525 2.9e-135
ZFIN|ZDB-GENE-041111-2622095 trip12 "thyroid hormone recept 0.297 0.208 0.435 2.4e-129
UNIPROTKB|Q146691992 TRIP12 "E3 ubiquitin-protein l 0.297 0.219 0.430 5.7e-124
UNIPROTKB|E2R6571993 TRIP12 "Uncharacterized protei 0.297 0.219 0.430 7.3e-124
UNIPROTKB|J9NRQ42011 TRIP12 "Uncharacterized protei 0.297 0.217 0.430 8.4e-124
UNIPROTKB|E1B7Q71992 TRIP12 "E3 ubiquitin-protein l 0.297 0.219 0.430 5e-123
TAIR|locus:2121224 KAK "AT4G38600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4568 (1613.1 bits), Expect = 0., P = 0.
 Identities = 933/1470 (63%), Positives = 1044/1470 (71%)

Query:     3 GLIRLLSTCASGSPLCAKTLLHLGISGILKDILSGSGVSANSAVPPALSRPAEQIFEIVN 62
             GLIRLLSTCASGSPL  +TLL LGIS ILKDIL GSGVSAN++V PALSRPA+QI+EIVN
Sbjct:   434 GLIRLLSTCASGSPLGFRTLLLLGISSILKDILLGSGVSANASVSPALSRPADQIYEIVN 493

Query:    63 LANELLPPLPQGTISLPSSSNMFVKGPVVRKSPASSSGKQDDTNGNASEVSAREKLLSDQ 122
             LANELLPPLP+G ISLP+S+N  VKG   +KS  S+SGKQ+D      ++S REKLL DQ
Sbjct:   494 LANELLPPLPEGVISLPTSTNALVKGSCQKKSSPSTSGKQEDI----LKISPREKLLGDQ 549

Query:   123 PELLQQFGMDLLPVLIQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLSVTNISSFL 182
             PELLQQFG+DLLPVL+QIYGSSVN  +RHKCLSVIGKLMYFSS+EMIQSL+  TNISSFL
Sbjct:   550 PELLQQFGLDLLPVLVQIYGSSVNGTIRHKCLSVIGKLMYFSSSEMIQSLIGDTNISSFL 609

Query:   183 AGVLAWKDPHVLIPSLQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNTNTVPSQAS 242
             AGVLAWKDP VL+P+LQ+AEILMEKLP TFSK+FVREGVVHAVDQL+L G     PS AS
Sbjct:   610 AGVLAWKDPQVLVPALQVAEILMEKLPETFSKVFVREGVVHAVDQLVLVGK----PSHAS 665

Query:   243 SADKDNDSIPGXXXXXXXXXXXGNANPECNSSEESKXXXXXXXXXXXXXXEIPTVNSNLR 302
               DKDND +PG            NAN + N SEE K              + PT +  LR
Sbjct:   666 PTDKDNDCVPGSARSRRYRRRSSNANSDGNQSEEPKNPASLTIGANHNSLDTPTASFMLR 725

Query:   303 SAVSASAKAFKEKYFPSDPGAAEVGVTDHLLHIKNLCMKLNAGVDDQRTXXXXXXXXXXX 362
               VS+ AKAFK+KYFPSD G  +VGVTD LLH+KNLC KL AG+DD +            
Sbjct:   726 ETVSSCAKAFKDKYFPSDGGDVDVGVTDDLLHLKNLCTKLTAGIDDHKVKGKGKSKASGP 785

Query:   363 RLADISATKEEYLIGVISEMLAELSTGDGVSTFEFIGSGVVAALLNYFSCGY--KERMSE 420
              L D SA+KEEYLIGVISE+L E+S GDGVSTFEFIGSGVVAALLNYFSCGY  KE++SE
Sbjct:   786 FLGDFSASKEEYLIGVISEILGEISKGDGVSTFEFIGSGVVAALLNYFSCGYFSKEKISE 845

Query:   421 ANMLKLRQQALKRFKSFIAVALPNSLDAGDVAPMTVLVQKLQNALSSLERFPVVLSHXXX 480
              N+ KLRQ+ L+RFK+F+ VALP   + G V PMTVL+QKLQNALSSLERFPVVLSH   
Sbjct:   846 LNLPKLRQEGLRRFKAFLEVALPFDGNEGKVPPMTVLIQKLQNALSSLERFPVVLSHPSR 905

Query:   481 XXXXXXXXXXXXXXXXQPFKLRLCRAQGDKSLRDYSSNVVLIDPLASLAAVEEFLWPRVQ 540
                              P KLRLCRA G+K+LRDYSSN+VLIDPLASLAAVEEFLWPRVQ
Sbjct:   906 SLSGSARLSSGLSALAHPLKLRLCRASGEKTLRDYSSNIVLIDPLASLAAVEEFLWPRVQ 965

Query:   541 RNESGQKPSASVGNSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNIGDGMKKEPS 600
             R+ES  KP+A +GN+E                                +NIGD  KK+P 
Sbjct:   966 RSESALKPAAPIGNTEPGTLPSGAGVSSPSSSTPASTTRRHSSRSRSAINIGDTSKKDPV 1025

Query:   601 QEXXXXXXXXXXXAVLKSAQEEVRGPQTXXXXXXXXXLDKDAQMKQANGXXXXXXXXXXI 660
              E            V+K AQ + +GPQT         LDKD QMK A+G          I
Sbjct:  1026 HEKGTSSSKGKGKGVMKPAQAD-KGPQTRSNAQKRAVLDKDTQMKPASGDSSSEDEELEI 1084

Query:   661 SPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLCLSDKVHDVKLGDSAEDSTTVPSAS 720
             SP                               P+C  DKVHDVKL DS +D     + S
Sbjct:  1085 SPVDIDDALVIEEDDISDDEDDDNEDVLDDSL-PMCTPDKVHDVKLADSVDDDGL--ATS 1141

Query:   721 DSQNNPXXXXXXXXXXXXXXXXXDFRGGNSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 780
               Q NP                 D   GNSY                             
Sbjct:  1142 GRQMNPASGGTSGAAAARASDSIDTGIGNSYGSRGALSFAAAAMAGLGAASGRGIRGSRD 1201

Query:   781 XXXXPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERXXXXXXXXXXXX 840
                  L  SS+EP KLIFT  GKQL+RHLTIYQA+QRQL+LDED+D+R            
Sbjct:  1202 LHGRTLNRSSDEPSKLIFTAAGKQLSRHLTIYQAVQRQLMLDEDDDDRFGGSDLVSSDGS 1261

Query:   841 RLWNDIYTITYQRADSQADRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDSILQG 900
             R +NDIYTI YQR DSQ +R+                               LLDSILQG
Sbjct:  1262 R-FNDIYTIMYQRPDSQVNRLSVGGASSTTPSKSTKSATTNSSVESQSHRASLLDSILQG 1320

Query:   901 ELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELSGTGVRVP 960
             ELPCDLEKSN TY +LALLRVLEGLNQL PRLRAQT+ D +AEGKI+SLD+LS T  +VP
Sbjct:  1321 ELPCDLEKSNSTYNVLALLRVLEGLNQLCPRLRAQTLSDRFAEGKITSLDDLSTTAAKVP 1380

Query:   961 YEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLS 1020
              +EF+NSKLTPKLARQIQDALALCSGSLPSWCYQLT+ACPFLFPF+TRRQYFYSTAFGLS
Sbjct:  1381 LDEFVNSKLTPKLARQIQDALALCSGSLPSWCYQLTRACPFLFPFQTRRQYFYSTAFGLS 1440

Query:  1021 RALYRLQQQQGADGHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEV 1080
             RAL RLQQQQGADG GS NERE+R+GRL+RQKVRVSRNRILDSAAKVMEMYSSQKAVLEV
Sbjct:  1441 RALNRLQQQQGADGSGSTNEREMRIGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEV 1500

Query:  1081 EYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISG 1140
             EYFGEVGTGLGPTLEFYTLLS DLQ+  L MWRS SS +  SM+I  DE + GK S  + 
Sbjct:  1501 EYFGEVGTGLGPTLEFYTLLSHDLQKASLGMWRS-SSGDKVSMQIGRDEIEDGKPSAANR 1559

Query:  1141 DLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYK 1200
             D+V APLGLFPRPWP +AD SEGGQF KVIEYFRLLGRVMAKALQDGRLLD+P STAFYK
Sbjct:  1560 DIVLAPLGLFPRPWPSTADISEGGQFHKVIEYFRLLGRVMAKALQDGRLLDVPLSTAFYK 1619

Query:  1201 LVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDL 1260
             L+LG ELDLHDI+ FDAE GK LQEL V+V RK +LE +  DN   + DL  RG  IEDL
Sbjct:  1620 LILGQELDLHDIVLFDAELGKTLQELRVVVARKHYLEGVGGDNSSTISDLCLRGCRIEDL 1679

Query:  1261 CLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDIT 1320
              L+FTLPGYP+YIL+ GDE VDI NLEEYISLVVDATVK G+ RQ+EAFR+GFNQVFDIT
Sbjct:  1680 SLEFTLPGYPEYILRSGDEIVDITNLEEYISLVVDATVKRGVTRQIEAFRSGFNQVFDIT 1739

Query:  1321 SLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRA 1380
             SLQIFTP ELD+LLCGRRELWE   LAEHIKFDHGY AKSPAI+NLLEIMGE T DQQRA
Sbjct:  1740 SLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRA 1799

Query:  1381 FCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANY 1440
             FCQFVTGAPRLPPGGLAVLNPKLTIVRKHSST+ + A+NG G SE+ADDDLPSVMTCANY
Sbjct:  1800 FCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAAANGAGASETADDDLPSVMTCANY 1858

Query:  1441 LKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1470
             LKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct:  1859 LKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IBA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006464 "cellular protein modification process" evidence=IEA
GO:0016881 "acid-amino acid ligase activity" evidence=IEA
GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA
GO:0010091 "trichome branching" evidence=IMP
GO:0042023 "DNA endoreduplication" evidence=IMP
GO:0005886 "plasma membrane" evidence=IDA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
UNIPROTKB|Q0E4T3 Os02g0101700 "Os02g0101700 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2151306 UPL4 "AT5G02880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0287221 DDB_G0287221 "armadillo repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|A8I5Z4 CHLREDRAFT_113116 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041111-262 trip12 "thyroid hormone receptor interactor 12" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q14669 TRIP12 "E3 ubiquitin-protein ligase TRIP12" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R657 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NRQ4 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1B7Q7 TRIP12 "E3 ubiquitin-protein ligase TRIP12" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6WWW4UPL3_ARATH6, ., 3, ., 2, ., -0.75030.98840.7695yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_700052.1
annotation not avaliable (1884 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1470
cd00078352 cd00078, HECTc, HECT domain; C-terminal catalytic 1e-119
smart00119328 smart00119, HECTc, Domain Homologous to E6-AP Carb 4e-92
pfam00632298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 8e-92
COG5021872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 1e-77
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 2e-05
PRK05901509 PRK05901, PRK05901, RNA polymerase sigma factor; P 1e-04
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information 
 Score =  376 bits (968), Expect = e-119
 Identities = 155/420 (36%), Positives = 212/420 (50%), Gaps = 75/420 (17%)

Query: 1051 QKVRVSRNRILDSAAKVMEMYSSQ--KAVLEVEYFGEVGTG-LGPTLEFYTLLSRDLQRV 1107
             K+ V R+RIL+ A + +   SS   K VLEVE+ GE G    G T EF+TL+S++L   
Sbjct: 1    LKITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGEEGIDAGGVTREFFTLVSKELFNP 60

Query: 1108 GLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFS 1167
               ++R                                   L+P P   + +        
Sbjct: 61   SYGLFRYTPDDSG---------------------------LLYPNPSSFADE-------- 85

Query: 1168 KVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELH 1227
              ++ FR LGR++ KAL +GRLLDLPFS AFYK +LG  L L D+   D E  K L+EL 
Sbjct: 86   DHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKEL- 144

Query: 1228 VIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPG--DENVDINN 1285
                          D  E+ ++L F       + LD +  G     LKPG  D  V   N
Sbjct: 145  ---------LDNDGD--EDDLELTF------TIELDSSFGGAVTVELKPGGRDIPVTNEN 187

Query: 1286 LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAA 1345
             EEY+ L VD  +  GI  Q+EAFR GF++V     L +FTP EL+ L+CG  +  +   
Sbjct: 188  KEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSED-IDLED 246

Query: 1346 LAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTI 1405
            L ++ ++  GY++ SP I    E++  FT ++++ F QFVTG+ RLP GG A LNPK TI
Sbjct: 247  LKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFTI 306

Query: 1406 VRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 1465
             R  S                 DD LP+  TC N LKLPPYS+KEI+ +KL+YAI+EG G
Sbjct: 307  RRVGSP----------------DDRLPTAHTCFNLLKLPPYSSKEILREKLLYAINEGAG 350

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1470
KOG0170621 consensus E3 ubiquitin protein ligase [Posttransla 100.0
COG5021872 HUL4 Ubiquitin-protein ligase [Posttranslational m 100.0
KOG0941850 consensus E3 ubiquitin protein ligase [Posttransla 100.0
cd00078352 HECTc HECT domain; C-terminal catalytic domain of 100.0
KOG09421001 consensus E3 ubiquitin protein ligase [Posttransla 100.0
smart00119336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 100.0
KOG44271096 consensus E3 ubiquitin protein ligase [Posttransla 100.0
KOG0939720 consensus E3 ubiquitin-protein ligase/Putative ups 100.0
KOG01681051 consensus Putative ubiquitin fusion degradation pr 100.0
PF00632317 HECT: HECT-domain (ubiquitin-transferase); InterPr 100.0
KOG0940358 consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos 100.0
KOG09433015 consensus Predicted ubiquitin-protein ligase/hyper 100.0
KOG01681051 consensus Putative ubiquitin fusion degradation pr 98.7
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 87.66
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 80.75
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.8e-144  Score=1231.81  Aligned_cols=618  Identities=55%  Similarity=0.868  Sum_probs=536.0

Q ss_pred             eEEEEECCccCCCCCcHHHHHHHHhhcccccccccCCCCccCCCCCCCcccceEEEEEecCCcccccccCCCCCCCCCCC
Q 000474          795 KLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERFGGSDFISSDGSRLWNDIYTITYQRADSQADRMSAGVSSSATPSKS  874 (1470)
Q Consensus       795 ~l~f~~~~~~l~~~~Ti~~av~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~  874 (1470)
                      +|.|++.|+.+++++|+||||+|+..+.+++    ..++ +. .... |+.+|+|+|++-+.......+++.+...++.+
T Consensus         1 ~l~f~~~g~~l~~~~t~yqav~~~~~~~e~e----~~s~-s~-~~~~-~~~t~~~~~~~~d~~~n~~~vg~~s~~~~~~~   73 (621)
T KOG0170|consen    1 RLQFYIGGHLLPRNLTVYQAVRQFSIQAEDE----DESN-PL-GRGG-WNKTYTIWYQREDSESNKDCVGGKRGRAQTAP   73 (621)
T ss_pred             CceEEeccccccccchHHHHHHHHhhhcccc----ccCC-cc-ccCc-chhhhhhhhhccchhhhhcccccccccccCCc
Confidence            4799999999999999999999998877643    1111 11 2233 99999999997554433333332211111222


Q ss_pred             CCCCCCCCCCC-ccccccchhhhhccCCCCCCccCCCChHHHHHHHHHHHHhhhhchhhhhccccccccccccccccccc
Q 000474          875 SKSGSASNSNS-DSASRMSLLDSILQGELPCDLEKSNPTYTILALLRVLEGLNQLAPRLRAQTVCDSYAEGKISSLDELS  953 (1470)
Q Consensus       875 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~lL~~l~~ln~~~~~~~~~~~~~~~~~~~~~~l~~~~  953 (1470)
                      .+.... +... +.+|..+.+...+     ...+..++.+++++|+|+.  ....|                 -.++++.
T Consensus        74 ~~~~~~-n~~~~~~~h~~~~~~~~~-----~~~e~~~~~~~~i~l~rv~--~~~~~-----------------~~l~d~~  128 (621)
T KOG0170|consen   74 TKTSPT-NKKHDELSHDPSVSNPLL-----VPLENINPSLDVILLLRVA--IEGYW-----------------YYLDDLA  128 (621)
T ss_pred             ccccCc-CCchhhccCChhhccccc-----cchhhcCchHHHHHHHhhc--ccchh-----------------hhhhhhh
Confidence            222111 1111 2233222221111     1344445788888888882  22222                 2334444


Q ss_pred             CCCCCCChhhHhcccchHHHHHHHHHHHHHhcCCCChhHhhhhccCCcccChhhHHHHHHhhhhchhHHHHHHHHhhcCC
Q 000474          954 GTGVRVPYEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGAD 1033 (1470)
Q Consensus       954 ~~~~~~~~~~F~~~klt~Kl~rql~~~l~~~s~~lp~w~~~l~~~~PFLfpfetR~~~f~~tsfg~~R~l~~lq~~~~~~ 1033 (1470)
                      .....+|.++|||+|||+|++||++||+++|+|.+|.||.+|++.|||||||+||++|||+|+||++|++++||+.++.+
T Consensus       129 ~~~~~vp~sefiNsKLt~Kl~rql~d~l~v~sg~lp~w~~~L~~~cpfLfpf~Tr~~~f~~taFg~~R~~~~~k~~s~~~  208 (621)
T KOG0170|consen  129 MCKEIVPTSEFINSKLTAKLARQLQDPLVVASGALPDWSLFLTRRCPFLFPFDTRMLYFYSTAFGLSRAIQLLKNKSKGS  208 (621)
T ss_pred             hhhcCCChHHHHHHHhhHHHHHHhcCcceeecCCCChhhhhhhhcCCeeccHHHHHHHHHHHHhhhhhHHHHHhhcccCC
Confidence            45588999999999999999999999999999999999999999999999999999999999999999999999988767


Q ss_pred             CCCCCcchhhhcccccccccccChhHHHHHHHHHHhhccCCCccEEEEEeCccccCccchHHHHHHHHHHHhcCCCCCcc
Q 000474         1034 GHGSVNEREIRVGRLERQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSRDLQRVGLAMWR 1113 (1470)
Q Consensus      1034 ~~~~~~~~~~~~grl~r~kv~V~R~~IlesA~~~l~~~~~~k~~LeVeF~gE~G~g~GptrEFfslvs~El~~~~l~lf~ 1113 (1470)
                      .+++.++...++|||+|+|++|+|++||++|+++|++|++++.+|||||++|+|+|+|||+|||++|++||++++++|||
T Consensus       209 ~~~s~~e~~~~~grL~RkK~risR~~Il~sa~kvm~~ygss~~vLEIEY~~EvGTGLGPTLEFYtlVSk~fq~~sLgmWR  288 (621)
T KOG0170|consen  209 KDGSNDEALQQLGRLTRKKLRISRKTILASALKVMEKYGSSKAVLEIEYEEEVGTGLGPTLEFYTLVSKEFQRASLGMWR  288 (621)
T ss_pred             CCCCchHHhHhhcccchhhhhhhHHHHHHHHHHHHHHhcCCcceEEEEeccccccCCCcceeeHHHHHHHHhhccccccc
Confidence            76666677788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCccCCCchhHHHHHHHcccccceeeecCCccccc
Q 000474         1114 SNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLP 1193 (1470)
Q Consensus      1114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~s~~~~~~~~l~~F~fLG~~vakAl~d~~~ldl~ 1193 (1470)
                      ++.-+    +.+       +++ .+...+|..+.||||.||++....+++   .+++++|++||+||||||+|+|++|+|
T Consensus       289 ~~s~s----~~~-------~k~-~~~t~~v~~~sgLFp~P~~~ts~~se~---~kvi~~F~~LG~~vAkal~D~Rildlp  353 (621)
T KOG0170|consen  289 CNSVS----YRS-------GKP-QENTKDVYITSGLFPRPWPPTSNSSEN---EKVIELFRLLGTFVAKALQDGRILDLP  353 (621)
T ss_pred             cCcee----ecc-------CCC-CCCcchhhhccccCCCCCCCCCCchhH---HHHHHHHHHHHHHHHHHHhcCceEeee
Confidence            98542    111       122 456789999999999999997655553   689999999999999999999999999


Q ss_pred             CCHHHHHHHhCCCCCccchhhcCHHHHHHHHHHHHHHhhhhhhhhcccCccchhhcccccCCcccccccccccCCCCcee
Q 000474         1194 FSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYI 1273 (1470)
Q Consensus      1194 fs~~f~K~Llg~~ltl~DL~~vDp~l~ksL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlpg~~~iE 1273 (1470)
                      |+++|||+++|++++..|+..|||+++++|.+|+.++.+|+.++...|+...+..+|+++||.||||||+||+||+++||
T Consensus       354 ls~~Fykl~l~q~Lt~~dv~~vd~~l~~sL~~Le~vv~~k~~~~~~~~d~~~a~~dltl~g~~iEdL~LdFTLPG~p~ie  433 (621)
T KOG0170|consen  354 LSKAFYKLILGQELTSHDVTTVDPELAKSLLELELVVPRKKKLEKYIGDVANADDDLTLNGCSIEDLSLDFTLPGFPDIE  433 (621)
T ss_pred             ccHHHHHHHhcCCcccccceecCHHHHHHHHHHHHHhhhhhhhhhhcccccccccceeecCcchhhceeeEecCCCCCee
Confidence            99999999999999999999999999999999999999999998887888888999999999999999999999999999


Q ss_pred             cCCCCc--ccCcCcHHHHHHHHHHHHhhhcHHHHHHHHHHhcccccccccccCCCHHHHHhhhcCCCCCCCHHHhhhhcE
Q 000474         1274 LKPGDE--NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIK 1351 (1470)
Q Consensus      1274 L~pgG~--~VT~~N~~eYV~lv~~~~L~~~v~~Q~~Afr~GF~~V~p~~~L~~Fsp~EL~~licG~~e~w~~e~L~~~~~ 1351 (1470)
                      |+|||.  +||..|++|||+.|++|++++||.+|++|||.||++|||++.|++|+|+||+.|+||..++|+.++|++|++
T Consensus       434 L~p~g~~~~V~~~NleEYi~~VId~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~  513 (621)
T KOG0170|consen  434 LIPGGANKPVTISNLEEYIHGVIDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIK  513 (621)
T ss_pred             eccCCCCCccccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcc
Confidence            999998  999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCChHHHHHHHHHhcCCHHHHHHhhhhhcCCCCCCCCCCccCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCC
Q 000474         1352 FDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDL 1431 (1470)
Q Consensus      1352 ~~~Gyt~~s~~I~~Fwevl~efs~eerr~FLqFvTGs~rLP~gGf~~L~p~ltIvrk~~~~~~~~~~~~~g~~~~~d~~L 1431 (1470)
                      +|||||++||+|+.|++||+.|+.+|||.||||||||||||+|||++|+|+||||||+.+.           ++++|++|
T Consensus       514 ~DHGYT~~Sp~i~~li~ils~f~~~qQR~FLQFvTGSprLPiGGfasLNPklTIVrKh~e~-----------~~t~Dd~L  582 (621)
T KOG0170|consen  514 ADHGYTMDSPIIHDLISILSAFDKEQQRLFLQFVTGSPRLPIGGFASLNPKLTIVRKHAED-----------SETPDDYL  582 (621)
T ss_pred             cccCccCCCcHHHHHHHHhhhhchHHHHHHHHHhcCCCCCCCCcccccCCCeEEEeccCCC-----------CCCccccc
Confidence            9999999999999999999999999999999999999999999999999999999999876           58899999


Q ss_pred             cEEecccCcccCCCCCCHHHHHHHHHHHHHhCCcccccC
Q 000474         1432 PSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 1470 (1470)
Q Consensus      1432 Psa~TCfn~LkLP~YsS~eiLreKL~~AI~eg~g~F~LS 1470 (1470)
                      |+||||+||||||+|||+|+||+||.+||+||||+||||
T Consensus       583 PSVMTCaNYLKLP~YSSkEiM~~kL~~Ai~EGqgSFhLS  621 (621)
T KOG0170|consen  583 PSVMTCANYLKLPPYSSKEIMRSKLLYAIEEGQGSFHLS  621 (621)
T ss_pred             chHHHHHhhhcCCCCchHHHHHHHHHHHHHccccccccC
Confidence            999999999999999999999999999999999999998

>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1470
3tug_A398 Crystal Structure Of The Hect Domain Of Itch E3 Ubi 6e-27
1c4z_A358 Structure Of E6ap: Insights Into Ubiquitination Pat 1e-26
1nd7_A374 Conformational Flexibility Underlies Ubiquitin Liga 1e-25
2xbb_A386 Nedd4 Hect:ub Complex Length = 386 1e-25
3jvz_C385 E2~ubiquitin-Hect Length = 385 2e-23
3jw0_C385 E2~ubiquitin-Hect Length = 385 3e-23
3h1d_A405 Structure Of The Huwe1 Hect Domain Length = 405 5e-22
3g1n_A388 Catalytic Domain Of The Human E3 Ubiquitin-Protein 2e-21
2oni_A392 Catalytic Domain Of The Human Nedd4-Like E3 Ligase 1e-20
1zvd_A380 Regulation Of Smurf2 Ubiquitin Ligase Activity By A 1e-18
3olm_A429 Structure And Function Of A Ubiquitin Binding Site 2e-16
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 Back     alignment and structure 
Iteration: 1

 Score =  120 bits (301), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 135/302 (44%), Gaps = 43/302 (14%)
Query: 1170 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVI 1229
            ++YFR +GR +A AL  G+ +D  FS  FYK +L   + L D+   D EF          
Sbjct: 130  LKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDPEF---------- 179
Query: 1230 VCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLE 1287
                  L  +  +N EE  DL    +  +++     L     + LKP   N+ +   N E
Sbjct: 180  ---YNSLIWVKENNIEEC-DLEMYFSVDKEI-----LGEIKSHDLKPNGGNILVTEENKE 230
Query: 1288 EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEP 1343
            EYI +V +  +  G+  Q +AF  GFN++     LQ F   EL+ LLCG +E+    W+ 
Sbjct: 231  EYIRMVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQR 290
Query: 1344 AALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKL 1403
             A+         Y   S  I+   + + E   +++    QFVTG  RLP GG A L    
Sbjct: 291  HAIYRR------YARTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADL---- 340
Query: 1404 TIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEG 1463
                       N            ++ LP   TC N L LPPY + E + +KL++AI E 
Sbjct: 341  --------MGSNGPQKFCIEKVGKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEET 392
Query: 1464 QG 1465
            +G
Sbjct: 393  EG 394
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 Back     alignment and structure
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 Back     alignment and structure
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 Back     alignment and structure
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 Back     alignment and structure
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 Back     alignment and structure
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 Back     alignment and structure
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 Back     alignment and structure
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1470
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 3e-75
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 1e-73
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 1e-73
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 2e-72
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 9e-71
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 4e-69
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 1e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
1rm1_C286 Transcription initiation factor IIA large chain; y 8e-04
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
 Score =  255 bits (654), Expect = 3e-75
 Identities = 114/506 (22%), Positives = 184/506 (36%), Gaps = 130/506 (25%)

Query: 987  SLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSVNEREIRVG 1046
               S   ++    P +  F+ +R+YF             L++         +        
Sbjct: 8    HHHSSGLEVLFQGPHM-DFDVKRKYFRQ----------ELERLDEGLRKEDM-------- 48

Query: 1047 RLERQKVRVSRNRIL-DSAAKVMEMYSSQ-KAVLEVEYFGEVGT--GLGPTLEFYTLLSR 1102
                  V V R+ +  DS  ++      + K  L + + GE G   G G   E+Y ++SR
Sbjct: 49   -----AVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAG-GLLREWYMIISR 102

Query: 1103 DLQRVGLAMWRSNSSSE-----NPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPS 1157
            ++     A++R++         NPS   + +                             
Sbjct: 103  EMFNPMYALFRTSPGDRVTYTINPSSHANPNH---------------------------- 134

Query: 1158 ADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDA 1217
                        + YF+ +GR++AKA+ D RLL+  F+ +FYK +LG  +   D+   D 
Sbjct: 135  ------------LSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDY 182

Query: 1218 EFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP----GYPDYI 1273
             F +              L  +  ++   +              L F+      G  +  
Sbjct: 183  HFYQ-------------GLVYLLENDVSTL-----------GYDLTFSTEVQEFGVAEVR 218

Query: 1274 -LKPGDEN--VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHEL 1330
             LKP   N  V   N +EY+ LV    +   I +Q+ AF  GF ++     + IFT  EL
Sbjct: 219  DLKPNGANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQEL 278

Query: 1331 DHLLCGRREL-WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAP 1389
            + L+ G   +  +   L  + ++ H Y + S  I      +  F    +  F QFVTG  
Sbjct: 279  ELLISGLPTIDID--DLKSNTEY-HKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTS 335

Query: 1390 RLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLP 1444
            ++P  G A L       K  I R   ST                D LPS  TC N L LP
Sbjct: 336  KVPLQGFAALEGMNGIQKFQIHRDDRST----------------DRLPSAHTCFNQLDLP 379

Query: 1445 PYSTKEIMYKKLVYAISEGQGSFDLS 1470
             Y + E +   L+ AI E    F L+
Sbjct: 380  AYESFEKLRHMLLLAIQEASEGFGLA 405
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} Length = 286 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1470
d1c4za_350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 7e-79
d1nd7a_374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 5e-77
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: Ubiquitin-protein ligase E3a (E6ap)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  262 bits (670), Expect = 7e-79
 Identities = 104/425 (24%), Positives = 178/425 (41%), Gaps = 96/425 (22%)

Query: 1052 KVRVSRNRILDSAAKVMEMYSSQ-----KAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQ 1105
            +++V R+ I+D A   +EM + +     K  L VE+ GE G    G + EF+ L+  ++ 
Sbjct: 5    RLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIF 64

Query: 1106 RVGLAMWRSNSSSENPSMEIDGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQ 1165
               + M+  + S+                                 + +  +  + E   
Sbjct: 65   NPDIGMFTYDEST---------------------------------KLFWFNPSSFE--- 88

Query: 1166 FSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQE 1225
                   F L+G V+  A+ +  +LD+ F    Y+ ++G +    D+        + L++
Sbjct: 89   ---TEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKD 145

Query: 1226 LHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP-----GYPDYI-LKPGDE 1279
            L                       L + G   +D+ + F +      G P    LK   +
Sbjct: 146  L-----------------------LEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGD 182

Query: 1280 NVDINN--LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITS-LQIFTPHELDHLLCG 1336
             + I N   +E+++L  D  +   + +Q +AFR GF+ V + +    +F P E++ L+CG
Sbjct: 183  KIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICG 242

Query: 1337 RRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGL 1396
             R   +  AL E  ++D GYT  S  I    EI+  FT +Q+R F QF TG  R P GGL
Sbjct: 243  SRN-LDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGL 301

Query: 1397 AVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKL 1456
              L  K+ I +                     + LP+  TC N L LP YS+KE + ++L
Sbjct: 302  GKL--KMIIAKNGPD----------------TERLPTSHTCFNVLLLPEYSSKEKLKERL 343

Query: 1457 VYAIS 1461
            + AI+
Sbjct: 344  LKAIT 348
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1470
d1nd7a_374 WW domain-containing protein 1, WWP1 {Human (Homo 100.0
d1c4za_350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 100.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.44
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 95.81
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 83.54
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=611.45  Aligned_cols=338  Identities=30%  Similarity=0.455  Sum_probs=299.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCC--CCCCCEEEEEECCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             443134681379999999996404--997508999917522476-50589999999998437999832389999998534
Q 000474         1049 ERQKVRVSRNRILDSAAKVMEMYS--SQKAVLEVEYFGEVGTGL-GPTLEFYTLLSRDLQRVGLAMWRSNSSSENPSMEI 1125 (1470)
Q Consensus      1049 ~r~kv~V~R~~il~sA~~vl~~~~--~~k~~LeVeF~gE~G~g~-GptrEFyslvs~El~~~~l~lf~~~~~~~~~~~~i 1125 (1470)
                      .+.+++|+|++|++|+++++....  ..+++|+|+|.||+|+|. ||+||||+++++|+++++++||+.++.+.      
T Consensus        22 ~~~~i~V~R~~l~~d~~~~l~~~~~~~l~~~l~V~F~gE~g~D~GG~~rEff~~l~~el~~p~~~lf~~~~~~~------   95 (374)
T d1nd7a_          22 SHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNN------   95 (374)
T ss_dssp             SEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETTTCCCCCTHHHHHHHHHHHHHHTCGGGSSEEESSSSS------
T ss_pred             CCEEEEECCCCHHHHHHHHHHHCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCC------
T ss_conf             85599976565899999999716989847876999789874478711999999999998088668756647988------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHCC
Q ss_conf             68888889887888874236898877999999777668870247899987023200000039802466799999998178
Q 000474         1126 DGDEGKSGKTSNISGDLVHAPLGLFPRPWPPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGH 1205 (1470)
Q Consensus      1126 d~~~~~~~~~~~~~~~yv~~~~GLfP~P~~~~~~~~~~~~~~~~l~~F~fLG~liakAl~d~~~ldl~fs~~f~K~llg~ 1205 (1470)
                                      +     .++|+|.....        ..++++|+|+|++||+||+++.+++++|+++|||+|+|+
T Consensus        96 ----------------~-----~~~~~p~~~~~--------~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~  146 (374)
T d1nd7a_          96 ----------------Y-----CLQINPASTIN--------PDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSK  146 (374)
T ss_dssp             ----------------C-----CEEECGGGGGS--------TTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTC
T ss_pred             ----------------C-----CCCCCCCCCCC--------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
T ss_conf             ----------------5-----53558744368--------058999988579999999849613877568999885499


Q ss_pred             CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCC-----CCCCEECCCCCC-
Q ss_conf             79935310007999999999999986543210013676100211322588533452100149-----997121289996-
Q 000474         1206 ELDLHDIIPFDAEFGKILQELHVIVCRKQHLESMTSDNCEEVVDLRFRGAPIEDLCLDFTLP-----GYPDYILKPGDE- 1279 (1470)
Q Consensus      1206 ~ltl~DL~~vDp~l~ksL~~L~~~~~~k~~~~~~~~~~~~~~~~l~~~~~~iedL~L~Ftlp-----g~~~ieL~pgG~- 1279 (1470)
                      +++++||..+||+++++|+++++.             +           .+..+++++|++.     ....+||+|||+ 
T Consensus       147 ~~t~~DL~~iD~~~~~sl~~l~~~-------------~-----------~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~  202 (374)
T d1nd7a_         147 KLTIKDLESIDTEFYNSLIWIRDN-------------N-----------IEECGLEMYFSVDMEILGKVTSHDLKLGGSN  202 (374)
T ss_dssp             CCCHHHHHTTCHHHHHHHHHHHSS-------------C-----------SCSSCCCCBSEECCCSSTTCCCEESSTTGGG
T ss_pred             CCCHHHHHHHCHHHHHHHHHHHHC-------------C-----------CCCCCCCEEEEEEEECCCCCCEEECCCCCCC
T ss_conf             898999988578988749999854-------------6-----------4104660357877512787422544789976


Q ss_pred             -CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCEECCCCCC
Q ss_conf             -4585728889999999976621899999999720113354333688999898652289877898886321185487799
Q 000474         1280 -NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTA 1358 (1470)
Q Consensus      1280 -~VT~~N~~eYV~lv~~~~L~~gv~~Q~~AFr~GF~~V~p~~~L~~Fsp~EL~~LicG~~e~w~~e~L~~~~~~d~Gy~~ 1358 (1470)
                       +||.+|+++||+++++|+++++++.|++|||+||++|+|...|++|+|+||+.++||.++ +|+++|++++.|. ||+.
T Consensus       203 ~~VT~~N~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~-id~~~l~~~~~y~-gy~~  280 (374)
T d1nd7a_         203 ILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYR-HYTR  280 (374)
T ss_dssp             CBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCC-CCHHHHHHTEEEE-SCCT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCCC-CCHHHHHHHEEEC-CCCC
T ss_conf             5206878999999999999721178999999986987679898764889999986279987-7889996432613-6789


Q ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             9868999999980499999997614122898889999766888-----15787148999988888999999999999967
Q 000474         1359 KSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNP-----KLTIVRKHSSTAPNTASNGTGPSESADDDLPS 1433 (1470)
Q Consensus      1359 ~s~~I~~Fwevl~~fs~eerr~FLqFvTGs~rLPigGf~~L~p-----~ltVv~k~~~~~~~~~~~~~g~~~~~d~~LPs 1433 (1470)
                      +|+.|+|||+||.+|+++||++||+|+||++|+|+|||+.|.+     +++|.+..                 ++++||+
T Consensus       281 ~s~~i~~fw~vl~~~t~ee~~~fL~FvTGs~rlP~~G~~~l~~~~~~~~~~i~~~~-----------------~~~~LP~  343 (374)
T d1nd7a_         281 NSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVG-----------------KDTWLPR  343 (374)
T ss_dssp             TSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETTEECCEEEECCS-----------------CTTSCCE
T ss_pred             CCHHHHHHHHHHHHCCHHHHHHHHEEECCCCCCCCCCHHHHCCCCCCCCEEECCCC-----------------CCCCCCC
T ss_conf             98899999998770699999874466368998898645654356788751314689-----------------9999970


Q ss_pred             EECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             7455672038899999999999999998098
Q 000474         1434 VMTCANYLKLPPYSTKEIMYKKLVYAISEGQ 1464 (1470)
Q Consensus      1434 a~TC~n~LkLP~YsS~eilreKL~~AI~eg~ 1464 (1470)
                      ||||||+|+||+|+|+|+|++||++||+|++
T Consensus       344 A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~e  374 (374)
T d1nd7a_         344 SHTCFNRLDLPPYKSYEQLKEKLLFAIEETE  374 (374)
T ss_dssp             EEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred             HHHHHCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             5440267669898899999999999997149
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure