Citrus Sinensis ID: 000481
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1467 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LGU1 | 1464 | ABC transporter C family | yes | no | 0.991 | 0.993 | 0.666 | 0.0 | |
| Q9LYS2 | 1453 | ABC transporter C family | no | no | 0.947 | 0.956 | 0.444 | 0.0 | |
| Q7GB25 | 1514 | ABC transporter C family | no | no | 0.916 | 0.888 | 0.431 | 0.0 | |
| Q9LK64 | 1514 | ABC transporter C family | no | no | 0.850 | 0.824 | 0.448 | 0.0 | |
| Q9M1C7 | 1506 | ABC transporter C family | no | no | 0.978 | 0.953 | 0.406 | 0.0 | |
| Q8VZZ4 | 1466 | ABC transporter C family | no | no | 0.941 | 0.942 | 0.411 | 0.0 | |
| Q9LZJ5 | 1539 | ABC transporter C family | no | no | 0.931 | 0.888 | 0.395 | 0.0 | |
| Q9LK62 | 1493 | ABC transporter C family | no | no | 0.850 | 0.835 | 0.425 | 0.0 | |
| Q7DM58 | 1516 | ABC transporter C family | no | no | 0.927 | 0.897 | 0.399 | 0.0 | |
| Q7FB56 | 1053 | Putative ABC transporter | no | no | 0.710 | 0.989 | 0.450 | 0.0 |
| >sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 1912 bits (4953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 980/1470 (66%), Positives = 1171/1470 (79%), Gaps = 16/1470 (1%)
Query: 4 LGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRRE 63
+ +G L W C+ E +L S C Q T I +NL+F C+FYL L+ S H R R++
Sbjct: 1 MAAFIGSLPW-CDVELNLASSCFQRTAIAFVNLLFLCIFYL-FLIASCVSTHFIVRGRKK 58
Query: 64 C-VSIVVSACCAVVGIAYLGYCLWNLI-AKND-SSMSWLVSTVRGLIWVSLAISLLVKRS 120
+ + V+ CCA+ +LG L +LI ND + +SW+ V G+IWVSLA+SLLV S
Sbjct: 59 GWIFVAVAICCAITSFIFLGVGLNSLIHGGNDVTEISWVACFVEGIIWVSLAVSLLVNGS 118
Query: 121 KWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSP 180
KW+ +L+++WW+SF+LL L IL + I ++ IL LP++LLLL ++ N +S
Sbjct: 119 KWVNILVSVWWVSFALLDLVAKSGILLQGNGIRILDILTLPMSLLLLLCSWMNLRS-SSA 177
Query: 181 NREDKS---LSEPLLAE---KNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSL 234
+D S LS+PLL + K L AG L+FSW+NPLLSLG+ KPL+ EDIPS+
Sbjct: 178 AAQDCSVTGLSDPLLTKNPRKESARLATAGFFSILSFSWMNPLLSLGFKKPLSPEDIPSV 237
Query: 235 VPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVV 294
VPEDEA AY+KF+ AWD+L+ + +S NLV + + VY KENIFIA+ A LRT AVV
Sbjct: 238 VPEDEAQLAYKKFSQAWDTLLGDESSTKERNLVFRAVVKVYFKENIFIAVFAFLRTFAVV 297
Query: 295 VGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354
PL+LY FV+Y+N +L+ G + CL++ K+VES T RH +F SRRSGMR+RSALM
Sbjct: 298 SLPLMLYVFVDYANSDHRDLRNGFFNLACLVMLKLVESLTMRHWYFASRRSGMRIRSALM 357
Query: 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFG 414
VA Y+KQLKLSSLGRK+HS+GEIVNYIAVDAYRMGEF +WFH WSL+LQL L+ VLFG
Sbjct: 358 VAAYKKQLKLSSLGRKRHSSGEIVNYIAVDAYRMGEFLWWFHSGWSLSLQLLLSTAVLFG 417
Query: 415 VVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSW 474
VVG GA PGL+L L+CGLLN+PFAK+LQ CQ++FMIAQD+RLRSTSEILN+MK+IKLQSW
Sbjct: 418 VVGAGAFPGLILLLLCGLLNLPFAKMLQNCQTQFMIAQDKRLRSTSEILNSMKVIKLQSW 477
Query: 475 EEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNAST 534
E++FK IES R+ EF WL++AQL KA+G+ +YWMSPTI+SSV+FLGCAL SAPLNAST
Sbjct: 478 EDEFKKKIESCRDDEFTWLAKAQLTKAFGSFLYWMSPTIVSSVVFLGCALLKSAPLNAST 537
Query: 535 IFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594
IFTVLATLR M EPV++IP+A+S +IQ VSF R+N FLLD EL D++ R L S +
Sbjct: 538 IFTVLATLRVMSEPVKIIPDAISAIIQGNVSFQRLNNFLLDDELKMDEIERSGLDASGTA 597
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
V IQ GNF W+PE IPTLR ++L+IK QK+AVCG VGAGKSSLL+A+LGEIPK+SGTV
Sbjct: 598 VDIQVGNFGWEPETKIPTLRNIHLEIKHGQKVAVCGPVGAGKSSLLHAVLGEIPKVSGTV 657
Query: 655 NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714
++GSIAYVSQTSWIQSG+IRDNILYGKPM+ RY+ AIKACALDKD+N F HGDLTEIG
Sbjct: 658 KVFGSIAYVSQTSWIQSGTIRDNILYGKPMESRRYNAAIKACALDKDMNGFGHGDLTEIG 717
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL 774
QRG+NLSGGQKQRIQLARAVY DAD+YL DDPFSAVDAHTA LF++CV +L++KTVIL
Sbjct: 718 QRGINLSGGQKQRIQLARAVYADADVYLLDDPFSAVDAHTAGVLFHKCVEDSLKEKTVIL 777
Query: 775 VTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQ 834
VTHQVEFLSEVD+ILV+E G ITQSG Y+ELL+ GTAF+QLVNAH DA+T L N
Sbjct: 778 VTHQVEFLSEVDQILVMEEGTITQSGKYEELLMMGTAFQQLVNAHNDAVTVLPLASNESL 837
Query: 835 GGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLN 894
G K K R R N K E E + QLT++EE E G VG KPF+DY+
Sbjct: 838 GDLRKEGKDREIR----NMTVVEKIEEEIEKTDIPGVQLTQEEEKESGYVGMKPFLDYIG 893
Query: 895 VSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYF 954
VS+G LL VL Q GFV QAA+TYWLA+AI IPKIT+ +LIGVY+ +ST SA FVY
Sbjct: 894 VSRGWCLLWSSVLGQVGFVVFQAASTYWLAFAIGIPKITNTMLIGVYSIISTLSAGFVYA 953
Query: 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIV 1014
R+ AHLGLKASKAFFSGFTN++FKAPMLFFDSTPVGRILTR SSDL++LD+D+PF+ +
Sbjct: 954 RAITTAHLGLKASKAFFSGFTNAVFKAPMLFFDSTPVGRILTRASSDLNVLDYDVPFAFI 1013
Query: 1015 FVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVM 1074
FV A EL A + IMT+VTWQV+++A+ A+ A + VQ YY+A+ARELIRINGTTKAPVM
Sbjct: 1014 FVVAPAVELTAALLIMTYVTWQVIIIALLALAATKVVQDYYLASARELIRINGTTKAPVM 1073
Query: 1075 NYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLF 1134
NY AETS GVVTIRAF +RFF+NYL LVD DA LFF +N MEW+ILR+E LQN+TLF
Sbjct: 1074 NYAAETSLGVVTIRAFGTAERFFKNYLNLVDADAVLFFLSNAAMEWVILRIETLQNVTLF 1133
Query: 1135 TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIP 1194
T AL L+LIP+GY+APGLVGLSLSYA TLT TQVFL+RWYC L+N IISVERIKQ+M+IP
Sbjct: 1134 TCALLLILIPKGYIAPGLVGLSLSYALTLTQTQVFLTRWYCTLSNSIISVERIKQYMNIP 1193
Query: 1195 PEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGS 1254
EPPAI++DKRPPSSWP G I L++LKIRYRPNAPLVLKGI+CTF EGTRVGVVGRTGS
Sbjct: 1194 EEPPAIIDDKRPPSSWPSNGTIHLQELKIRYRPNAPLVLKGISCTFREGTRVGVVGRTGS 1253
Query: 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL 1314
GK+TLISALFRLVEPA G ILIDG+DI +GLKDLR+KLSIIPQEPTLFRG +RTNLDPL
Sbjct: 1254 GKSTLISALFRLVEPASGCILIDGIDISKIGLKDLRMKLSIIPQEPTLFRGCIRTNLDPL 1313
Query: 1315 GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374
G+YSDDEIWKALEKCQLKTTIS+LPNKLDSSVSDEGENWS GQRQLFCLGRVLLKRN+IL
Sbjct: 1314 GVYSDDEIWKALEKCQLKTTISNLPNKLDSSVSDEGENWSVGQRQLFCLGRVLLKRNKIL 1373
Query: 1375 VLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEP 1434
VLDEA ASIDSATDAI+QRIIR+EF++CTVITVAHRVPTVIDSDMVMVLS+G L+EY+EP
Sbjct: 1374 VLDEATASIDSATDAIIQRIIREEFADCTVITVAHRVPTVIDSDMVMVLSFGDLVEYNEP 1433
Query: 1435 SKLMETNSSFSKLVAEYWSSCRRNSYQNLN 1464
SKLMET+S FSKLVAEYW+SCR NS QNL
Sbjct: 1434 SKLMETDSYFSKLVAEYWASCRGNSSQNLQ 1463
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Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1199 bits (3103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 637/1433 (44%), Positives = 906/1433 (63%), Gaps = 43/1433 (3%)
Query: 43 YLSLLVGSFRKNHNYGRIRRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSS--MSWLV 100
+L+L + F K + C+ +V + ++G L +W ++ +N S + WLV
Sbjct: 34 FLTLCICLFHKEPPKRIHQFFCLRLVSALFNGIIGSLDLVLGIW-VLRENHSKPLILWLV 92
Query: 101 STVRGLIWVSLAISLLVK----RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVY 156
++G W+ + + + V+ R +R+L +++ + L+ L++ + V
Sbjct: 93 ILIQGFTWLFINLIICVRGTRIRKSSLRLL-SIFSFFYGLVSSCLSVNNAVFGDELAVRT 151
Query: 157 ILPLPVNLLLLFSAFRNFSHFTSPNREDKSLSEPLLA------------EKNQTELGKAG 204
IL + + + + + + SL EPL A + ++ KAG
Sbjct: 152 ILDVLLLPGSVLLLLSAYKGYRFDESGESSLYEPLNAGDSNGFSEKADFDNRVSQFAKAG 211
Query: 205 LLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNG 264
L L+F W+N L+ G K L EDIP L E+ A Y F R S+
Sbjct: 212 LFSTLSFWWLNSLIKRGNVKDLEEEDIPELRKEERAETCYSLFEENLIEQKRRLGSSCQP 271
Query: 265 NLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCL 324
++++ + V+ +E + A ++ +AV GPLLL AF+ + EGL + L
Sbjct: 272 SILKVTVLCVW-RELLTSGFFAFMKIVAVSAGPLLLNAFILVAEGNASFRYEGLVLAVLL 330
Query: 325 IITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVD 384
+K++ES +QR +F R G+R+RS L A+ +KQL+L++ R HS EI+NY VD
Sbjct: 331 FFSKMIESLSQRQWYFRCRIVGLRVRSLLTAAINKKQLRLNNSSRLIHSGSEIMNYATVD 390
Query: 385 AYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKC 444
AYR+GEFP+WFH W+ + QL +A+G+LF VG+ L + ++ L N P AK+ K
Sbjct: 391 AYRIGEFPYWFHQLWTTSFQLLIALGILFHSVGVATFSALAVIILTVLCNAPIAKLQNKF 450
Query: 445 QSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT 504
QSE M +QDERL++ +E L NMK++KL +WE FK +IE R E K L Q+RKAY
Sbjct: 451 QSELMTSQDERLKACNESLVNMKVLKLYAWESHFKKVIEKLRNIELKSLKAVQMRKAYNA 510
Query: 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKV 564
V++W SP +S+ F C PL AS +FT +ATLR + +PVRMIP+ + + IQ KV
Sbjct: 511 VLFWSSPVFVSAATFATCYFL-DIPLRASNVFTFVATLRLVQDPVRMIPDVIGVTIQAKV 569
Query: 565 SFDRINAFLLDHELNNDDVRRISLQKSDR-SVKIQEGNFSWDPELAI-PTLRGVNLDIKW 622
+F RI FL EL + RR + ++ ++ I+ +FSW+ + + P LR V+L++K+
Sbjct: 570 AFSRIATFLEAPELQGGERRRKQRSEGNQNAIIIKSASFSWEEKGSTKPNLRNVSLEVKF 629
Query: 623 AQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGK 682
+K+AVCG VG+GKS+LL AILGE P +SGT++ YG+IAYVSQT+WIQ+G+IRDNIL+G
Sbjct: 630 GEKVAVCGEVGSGKSTLLAAILGETPCVSGTIDFYGTIAYVSQTAWIQTGTIRDNILFGG 689
Query: 683 PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742
MD+ RY + I+ +LDKD+ GD TEIG+RG+NLSGGQKQRIQLARA+Y DADIYL
Sbjct: 690 VMDEHRYRETIQKSSLDKDLELLPDGDQTEIGERGVNLSGGQKQRIQLARALYQDADIYL 749
Query: 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802
DDPFSAVDAHTA++LF E VM AL K V+LVTHQV+FL D +L++ G+IT++ Y
Sbjct: 750 LDDPFSAVDAHTASSLFQEYVMDALAGKAVLLVTHQVDFLPAFDSVLLMSDGEITEADTY 809
Query: 803 QELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSE 862
QELL F+ LVNAHR+ G+E+V P +P R SS+
Sbjct: 810 QELLARSRDFQDLVNAHRET------------AGSERVVA--VENPTKPVKEINRVISSQ 855
Query: 863 GEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYW 922
+ V ++L + EE E GD G +P++ Y+N +KG + LAQ F Q W
Sbjct: 856 SK--VLKPSRLIKQEEREKGDTGLRPYIQYMNQNKGYIFFFIASLAQVTFAVGQILQNSW 913
Query: 923 LAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAP 982
+A + P++++ LI VY + S + + RS + +K+S + FS NS+F+AP
Sbjct: 914 MAANVDNPQVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMCMKSSASLFSQLLNSLFRAP 973
Query: 983 MLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAI 1042
M F+DSTP+GRIL+R+SSDLSI+D D+PF ++FV AS +G++ VTWQVL V++
Sbjct: 974 MSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFVVASSVNTGCSLGVLAIVTWQVLFVSV 1033
Query: 1043 FAMVAVRF-VQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101
MV + F +Q+YY TA+EL+RINGTT++ V N+ AE+ G +TIRAF+ +RFF+ L
Sbjct: 1034 -PMVYLAFRLQKYYFQTAKELMRINGTTRSYVANHLAESVAGAITIRAFDEEERFFKKSL 1092
Query: 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAF 1161
L+D +AS FFH+ EWLI R+E + + L + A ++L+P G + G +G++LSY
Sbjct: 1093 TLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMILLPTGTFSSGFIGMALSYGL 1152
Query: 1162 TLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQL 1221
+L V+ + CYLAN+IISVER+ Q+ H+ PE P ++E+ RPP +WP GR+E+ L
Sbjct: 1153 SLNMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVIEETRPPVNWPVTGRVEISDL 1212
Query: 1222 KIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDI 1281
+IRYR +PLVLKGI+CTF G ++G+VGRTGSGKTTLISALFRLVEP GG I++DGVDI
Sbjct: 1213 QIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISALFRLVEPVGGKIVVDGVDI 1272
Query: 1282 CSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNK 1341
+G+ DLR + IIPQ+PTLF G+VR NLDPL +SD EIW+ L KCQLK + N
Sbjct: 1273 SKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAEIWEVLGKCQLKEVVQEKENG 1332
Query: 1342 LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSN 1401
LDS V ++G NWS GQRQLFCLGR +L+R+R+LVLDEA ASID+ATD ILQ+ IR+EF++
Sbjct: 1333 LDSLVVEDGSNWSMGQRQLFCLGRAVLRRSRVLVLDEATASIDNATDLILQKTIRREFAD 1392
Query: 1402 CTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM-ETNSSFSKLVAEYWS 1453
CTVITVAHR+PTV+D MV+ +S G+++EYDEP KLM + NS F KLV EYWS
Sbjct: 1393 CTVITVAHRIPTVMDCTMVLSISDGRIVEYDEPMKLMKDENSLFGKLVKEYWS 1445
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1137 bits (2942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/1401 (43%), Positives = 858/1401 (61%), Gaps = 56/1401 (3%)
Query: 95 SMSWLVSTVRGLIWVSLAISLLVKRSKWIRMLITLWW-MSFSLLVLA-------LNIEIL 146
S++W V + L + L K S+ + L+ +WW ++FS+ + L IE
Sbjct: 120 SLAWFVLSF-------LVLHLKYKSSEKLPFLVRIWWFLAFSICLCTMYVDGRRLAIEGW 172
Query: 147 ARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPNREDKSLSEPLLAEKNQ-----TELG 201
+R + V + P L F A+R S R L EPLL E+ T
Sbjct: 173 SRCSSHVVANLAVTPALGFLCFLAWRGVSGIQV-TRSSSDLQEPLLVEEEAACLKVTPYS 231
Query: 202 KAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSN 261
AGL+ +T SW++PLLS G +PL L+DIP L P D A +Y+ W EN S
Sbjct: 232 TAGLVSLITLSWLDPLLSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSENPSK 291
Query: 262 NNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIV 321
+ + I + KE A+ A L T+ VGP L+ FV+Y E EG +
Sbjct: 292 PPS--LARAIMKSFWKEAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFPHEGYVLA 349
Query: 322 GCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYI 381
G +K++E+ T R + G GM +RSAL VY+K LKLSS+ ++ H++GEIVNY+
Sbjct: 350 GIFFTSKLIETVTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYM 409
Query: 382 AVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKIL 441
AVD R+G++ ++ H W L +Q+ LA+ +L+ VG+ A+ LV +I L+ +P AK+
Sbjct: 410 AVDVQRIGDYSWYLHDIWMLPMQIVLALAILYKSVGIAAVATLVATIISILVTIPLAKVQ 469
Query: 442 QKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA 501
+ Q + M A+DER+R TSE L NM+++KLQ+WE++++ +E RE+E+ WL +A +A
Sbjct: 470 EDYQDKLMTAKDERMRKTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQA 529
Query: 502 YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQ 561
+ T I+W SP +++V F G+ L A + + LAT R + EP+R P+ +S+M Q
Sbjct: 530 FVTFIFWSSPIFVAAVTFATSIFLGTQ-LTAGGVLSALATFRILQEPLRNFPDLVSMMAQ 588
Query: 562 VKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIK 621
KVS DRI+ FL + EL D I S+ +++I++G F WDP + PTL G+ + ++
Sbjct: 589 TKVSLDRISGFLQEEELQEDATVVIPRGLSNIAIEIKDGVFCWDPFSSRPTLSGIQMKVE 648
Query: 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYG 681
++AVCG+VG+GKSS + ILGEIPKISG V + G+ YVSQ++WIQSG+I +NIL+G
Sbjct: 649 KGMRVAVCGTVGSGKSSFISCILGEIPKISGEVRICGTTGYVSQSAWIQSGNIEENILFG 708
Query: 682 KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741
PM+K +Y I+AC+L KDI F HGD T IG+RG+NLSGGQKQR+QLARA+Y DADIY
Sbjct: 709 SPMEKTKYKNVIQACSLKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIY 768
Query: 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801
L DDPFSA+DAHT + LF + +++AL +KTV+ VTHQVEFL D ILVL+ G+I QSG
Sbjct: 769 LLDDPFSALDAHTGSDLFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQSGK 828
Query: 802 YQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPR---- 857
Y +LL AGT F+ LV+AH +AI + + + E + + ++
Sbjct: 829 YDDLLQAGTDFKALVSAHHEAIEAMDIPSPSSEDSDENPIRDSLVLHNPKSDVFENDIET 888
Query: 858 --KESSEG--------------EISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSL 901
KE EG + QL ++EE G V K ++ Y+ + +L
Sbjct: 889 LAKEVQEGGSASDLKAIKEKKKKAKRSRKKQLVQEEERVKGKVSMKVYLSYMGAAYKGAL 948
Query: 902 LCLGVLAQSGFVGLQAAATYWLAYAI-----QIPKITSGILIGVYAGVSTASAVFVYFRS 956
+ L +LAQ+ F LQ A+ +W+A+A K+ +L+ VY ++ S+VF++ R+
Sbjct: 949 IPLIILAQAAFQFLQIASNWWMAWANPQTEGDESKVDPTLLLIVYTALAFGSSVFIFVRA 1008
Query: 957 FFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFV 1016
A GL A++ F S+F+APM FFDSTP GRIL R+S D S++D DIPF +
Sbjct: 1009 ALVATFGLAAAQKLFLNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGF 1068
Query: 1017 AASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNY 1076
A++ +L I+ +MT VTWQV ++ + VA ++Q+YY+A++REL+RI K+P+++
Sbjct: 1069 ASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRIVSIQKSPIIHL 1128
Query: 1077 TAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA 1136
E+ G TIR F RF + L L+D FF + +EWL LR+E L L
Sbjct: 1129 FGESIAGAATIRGFGQEKRFIKRNLYLLDCFVRPFFCSIAAIEWLCLRMELLSTLVFAFC 1188
Query: 1137 ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRW---YCYLANYIISVERIKQFMHI 1193
+ LV P G + P + GL+++Y L G LSRW +C L N IIS+ERI Q+ I
Sbjct: 1189 MVLLVSFPHGTIDPSMAGLAVTYGLNLNGR---LSRWILSFCKLENKIISIERIYQYSQI 1245
Query: 1194 PPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTG 1253
E PAI+ED RPPSSWP G IEL +K+RY N P VL G++C F G ++G+VGRTG
Sbjct: 1246 VGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGIVGRTG 1305
Query: 1254 SGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP 1313
SGK+TLI ALFRL+EP G I ID +DI +GL DLR +L IIPQ+PTLF G++R NLDP
Sbjct: 1306 SGKSTLIQALFRLIEPTAGKITIDNIDISQIGLHDLRSRLGIIPQDPTLFEGTIRANLDP 1365
Query: 1314 LGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373
L +SDD+IW+AL+K QL + KLDS V + G+NWS GQRQL LGR LLK+ +I
Sbjct: 1366 LEEHSDDKIWEALDKSQLGDVVRGKDLKLDSPVLENGDNWSVGQRQLVSLGRALLKQAKI 1425
Query: 1374 LVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDE 1433
LVLDEA AS+D+ATD ++Q+IIR EF +CTV T+AHR+PTVIDSD+V+VLS G++ E+D
Sbjct: 1426 LVLDEATASVDTATDNLIQKIIRTEFEDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDT 1485
Query: 1434 PSKLMETNSS-FSKLVAEYWS 1453
P++L+E SS F KLV EY S
Sbjct: 1486 PARLLEDKSSMFLKLVTEYSS 1506
|
Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1082 bits (2797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/1272 (44%), Positives = 821/1272 (64%), Gaps = 24/1272 (1%)
Query: 198 TELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRE 257
T +AG+L LTFSW++PL+ +G K L LED+P L D KF +S
Sbjct: 244 TPYSRAGILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLES---P 300
Query: 258 NNSNNNGNLVRKVITNVYLK---ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENL 314
+ +G K+I +Y E + A A + T+A VGP L+ FV Y N +
Sbjct: 301 DGGERSGVTTFKLIKALYFTAQWEILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYN 360
Query: 315 QEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHST 374
EG +V K+VE +QRH FF ++ G+RMRSAL+ +Y+K L LS ++ ++
Sbjct: 361 HEGYVLVITFFAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTS 420
Query: 375 GEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLN 434
GEI+N++ VDA R+G F ++ H W + LQ+ LA+ +L+ +GL ++ LV +I L+N
Sbjct: 421 GEIINFMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLIN 480
Query: 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLS 494
PF ++ ++ Q + M A+D R++STSEIL NM+I+KLQ WE KF S I R+ E WL
Sbjct: 481 FPFGRMQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLK 540
Query: 495 EAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPE 554
+ A + ++W +PT++S F C L G PL + I + LAT R + EP+ +P+
Sbjct: 541 KYVYNSAVISFVFWGAPTLVSVSTFGACILLG-IPLESGKILSALATFRILQEPIYNLPD 599
Query: 555 ALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLR 614
+S+++Q KVS DR+ ++L L D V R+ SD +V++ SWD + PTL+
Sbjct: 600 TISMIVQTKVSLDRLASYLCLDNLQPDIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLK 659
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674
+N + K+AVCG+VG+GKSSLL ++LGE+PK+SG++ + G+ AYV+Q+ WIQSG I
Sbjct: 660 DINFKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKI 719
Query: 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734
DNIL+GKPM++ RYDK ++AC+L KD+ GD T IG+RG+NLSGGQKQRIQ+ARA+
Sbjct: 720 EDNILFGKPMERERYDKVLEACSLSKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 779
Query: 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794
Y DADIYLFDDPFSAVDAHT + LF E ++ L K+VI VTHQVEFL D ILV++ G
Sbjct: 780 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDG 839
Query: 795 QITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLD------NAGQGGAEKVEKGRTARP 848
+I+Q+G Y ++L +GT F +L+ AH++A+ + +D + G + K A
Sbjct: 840 RISQAGKYNDILNSGTDFMELIGAHQEALAVVDSVDANSVSEKSALGQENVIVKDAIAVD 899
Query: 849 EEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLA 908
E+ + + E SV+ Q+ ++EE E G V + Y+ ++ G +L+ +L
Sbjct: 900 EKLESQDLKNDKLE---SVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALVPFILLG 956
Query: 909 QSGFVGLQAAATYWLAYA------IQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHL 962
Q F LQ + YW+A+A +Q P S ++I VY ++ S++ + R+
Sbjct: 957 QVLFQLLQIGSNYWMAWATPVSEDVQAPVKLSTLMI-VYVALAFGSSLCILLRATLLVTA 1015
Query: 963 GLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTE 1022
G K + F + IF++PM FFDSTP GRI++R S+D S +D ++P+ VA + +
Sbjct: 1016 GYKTATELFHKMHHCIFRSPMSFFDSTPSGRIMSRASTDQSAVDLELPYQFGSVAITVIQ 1075
Query: 1023 LLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQ 1082
L+ IIG+M+ V+W V +V I + A + QRYYIA AREL R+ G KAP++ + +ET
Sbjct: 1076 LIGIIGVMSQVSWLVFLVFIPVVAASIWYQRYYIAAARELSRLVGVCKAPLIQHFSETIS 1135
Query: 1083 GVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVL 1142
G TIR+F+ RF + ++L D + F+T G MEWL R++ L +LT + +FLV
Sbjct: 1136 GATTIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVS 1195
Query: 1143 IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202
IP G + P L GL+++Y +L Q +L C L N IISVERI Q+ +P EPP ++E
Sbjct: 1196 IPTGVIDPSLAGLAVTYGLSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPLVIE 1255
Query: 1203 DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISA 1262
RP SWP +G +E+R L++RY P+ PLVL+GITCTF G R G+VGRTGSGK+TLI
Sbjct: 1256 SNRPEQSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQT 1315
Query: 1263 LFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEI 1322
LFR+VEP+ G I IDGV+I ++GL DLR++LSIIPQ+PT+F G++R+NLDPL Y+DD+I
Sbjct: 1316 LFRIVEPSAGEIRIDGVNILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQI 1375
Query: 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
W+AL+KCQL + KLDSSVS+ G+NWS GQRQL CLGRVLLKR++ILVLDEA AS
Sbjct: 1376 WEALDKCQLGDEVRKKEQKLDSSVSENGDNWSMGQRQLVCLGRVLLKRSKILVLDEATAS 1435
Query: 1383 IDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME-TN 1441
+D+ATD ++Q+ +R+ FS+CTVIT+AHR+ +VIDSDMV++LS G + EYD P +L+E +
Sbjct: 1436 VDTATDNLIQKTLREHFSDCTVITIAHRISSVIDSDMVLLLSNGIIEEYDTPVRLLEDKS 1495
Query: 1442 SSFSKLVAEYWS 1453
SSFSKLVAEY S
Sbjct: 1496 SSFSKLVAEYTS 1507
|
Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1079 bits (2790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/1487 (40%), Positives = 902/1487 (60%), Gaps = 51/1487 (3%)
Query: 23 SFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGR------IRRECVSIV------VS 70
S C++ I + + F F + L + F N G ++++ +++ +S
Sbjct: 26 SLCLKERISIAMQVTFLAFFLIHLALKWFGVVRNRGSNDVEEDLKKQSITVKQSFSYNIS 85
Query: 71 ACCAVVGIAYLGYCLW-----NLIAKNDSSMSWLVSTV-RGLIWVSLAISLL-VKRSKWI 123
C+V + + L +++++ DSS+S + V + W+ +++ ++ ++ + +
Sbjct: 86 LLCSVSILGTHCFILLLLFRDSVVSRCDSSVSVFSAEVSQSFSWLFVSVVVVKIRERRLV 145
Query: 124 RM--LITLWWMSFSLLVLALNIEILARTYT----INVVYILPLPVNLLLLFSAFRNFSHF 177
+ ++ WW+ +L + + + + + + L +L LL + R + F
Sbjct: 146 KFPWMLRSWWLCSFILSFSFDAHFITAKHEPLEFQDYADLTGLLASLFLLAVSIRGKTGF 205
Query: 178 TSPNREDKSLSEPLL----AEKNQTE-------LGKAGLLRKLTFSWINPLLSLGYSKPL 226
E +EPLL E+N+ + G A L +++TFSWINPL SLGY +PL
Sbjct: 206 HL--LESSGNTEPLLLGDQTEQNKKDSYSSSSPYGNATLFQRITFSWINPLFSLGYKRPL 263
Query: 227 ALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICA 286
+D+P + +D A F F + +E N V+ V+ K I A+ A
Sbjct: 264 EKDDVPDIDVKDSARFCSHAFDQKLKT-TKEKEGPGNAFFYNSVLRYVWRKAAIN-AVFA 321
Query: 287 LLRTIAVVVGPLLLYAFVNY-SNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRS 345
++ +GP L+ FV + S + ++L G + + K+VE+ TQR FG+R+
Sbjct: 322 VVNASTAYIGPYLINDFVEFLSEKQSQSLNHGYLLALGFLTAKIVETVTQRQWIFGARQL 381
Query: 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQL 405
G+R+R+AL+ +YQK L LSS R+ H++GEI+NY++VD R+ +F ++ + W L +Q+
Sbjct: 382 GLRLRAALISHIYQKGLVLSSQSRQSHTSGEIINYMSVDVQRITDFIWYVNNIWMLPIQI 441
Query: 406 FLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNN 465
F AI +L +GLGAL LV L+ N P ++ + QS+ M A+D+R+++TSEIL N
Sbjct: 442 FSAIYILQKHLGLGALAALVTTLMVMACNYPLTRLQRNYQSDIMNAKDDRMKATSEILKN 501
Query: 466 MKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALT 525
MKI+KLQ+W+ +F + +++ R+KE+ L ++ +A+ T I W +P++IS V F+ C L
Sbjct: 502 MKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQAFTTFILWGAPSLISVVTFVTCMLM 561
Query: 526 GSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585
G L A + + LAT + + P+ +P+ LS ++Q KVS DRI ++L E D V
Sbjct: 562 G-VKLTAGAVLSALATFQMLQSPIFGLPDLLSALVQSKVSADRIASYLQQSETQKDAVEY 620
Query: 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG 645
S ++ SV+I+ G FSW+PE + PTL + L +K K+AVCG+VG+GKSSLL +ILG
Sbjct: 621 CSKDHTELSVEIENGAFSWEPESSRPTLDDIELKVKSGMKVAVCGAVGSGKSSLLSSILG 680
Query: 646 EIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNF 705
EI K+ GTV + G AYV Q+ WI SG+IRDNIL+G + +Y++ +KACAL KD F
Sbjct: 681 EIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILFGSMYESEKYERTVKACALIKDFELF 740
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
+GDLTEIG+RG+N+SGGQKQRIQ+ARAVY +ADIYL DDPFSAVDAHT LF +C+M
Sbjct: 741 SNGDLTEIGERGINMSGGQKQRIQIARAVYQNADIYLLDDPFSAVDAHTGRELFEDCLMG 800
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITG 825
L+ KTV+ VTHQVEFL D ILV++ G++ Q+G ++ELL FE LV AH +A+
Sbjct: 801 ILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAGKFEELLKQNIGFEVLVGAHNEALDS 860
Query: 826 LGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVG 885
+ ++ + + E K TA E + E + + K +L +DEE E G +G
Sbjct: 861 ILSIEKSSRNFKEG-SKDDTASIAESLQTHCDSEHNISTENKKKEAKLVQDEETEKGVIG 919
Query: 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAY-----AIQIPKITSGILIGV 940
+ ++ YL KG L+ +LAQS F LQ A+ YW+A+ A IPK+ G ++ V
Sbjct: 920 KEVYLAYLTTVKGGLLVPFIILAQSCFQMLQIASNYWMAWTAPPTAESIPKLGMGRILLV 979
Query: 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSS 1000
YA ++ S++ V R+ A GL ++ FFS SIF+APM FFDSTP GRIL R S+
Sbjct: 980 YALLAAGSSLCVLARTILVAIGGLSTAETFFSRMLCSIFRAPMSFFDSTPTGRILNRAST 1039
Query: 1001 DLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAR 1060
D S+LD ++ + + A S +++ I +M+ V WQV V+ I VA F QRYY TAR
Sbjct: 1040 DQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAWQVCVIFIPVAVACVFYQRYYTPTAR 1099
Query: 1061 ELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120
EL R++G +AP++++ AE+ G TIRAF+ DRF + L L+D + +FH MEW
Sbjct: 1100 ELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWFHVASAMEW 1159
Query: 1121 LILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANY 1180
L R+ L + + + LV +P G + P + GL ++Y +L Q + C N
Sbjct: 1160 LSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVTYGLSLNVLQATVIWNICNAENK 1219
Query: 1181 IISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTF 1240
+ISVERI Q+ IP E P +++ RP +WP G I R L++RY + P VLK ITC F
Sbjct: 1220 MISVERILQYSKIPSEAPLVIDGHRPLDNWPNVGSIVFRDLQVRYAEHFPAVLKNITCEF 1279
Query: 1241 SEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEP 1300
G ++GVVGRTGSGK+TLI ALFR+VEP+ G+I+ID VDI +GL DLR +L IIPQ+P
Sbjct: 1280 PGGKKIGVVGRTGSGKSTLIQALFRIVEPSQGTIVIDNVDITKIGLHDLRSRLGIIPQDP 1339
Query: 1301 TLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360
LF G++R NLDPL Y+D EIW+A++KCQL I + +LD++V + GENWS GQRQL
Sbjct: 1340 ALFDGTIRLNLDPLAQYTDHEIWEAIDKCQLGDVIRAKDERLDATVVENGENWSVGQRQL 1399
Query: 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMV 1420
CLGRVLLK++ ILVLDEA AS+DSATD ++Q+II QEF + TV+T+AHR+ TVI+SD+V
Sbjct: 1400 VCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVVTIAHRIHTVIESDLV 1459
Query: 1421 MVLSYGKLLEYDEPSKLMETNSS-FSKLVAEYWSSCRRNSYQNLNNF 1466
+VLS G++ E+D P+KL++ S FSKL+ EY S R N + N+
Sbjct: 1460 LVLSDGRIAEFDSPAKLLQREDSFFSKLIKEY--SLRSNHFAGSNDL 1504
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1065 bits (2754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/1418 (41%), Positives = 866/1418 (61%), Gaps = 37/1418 (2%)
Query: 68 VVSACCAVVGIAYLGYCLWNLIAKNDSSMSWLVSTVRGLIWVSLAISLLVKRS----KWI 123
+V CC + + Y L + + + + +L + L W S+++ L + + + +
Sbjct: 63 LVLICCVSLSVFYSVLSLLSCLHWHTNGWPFLDLLLAALTWGSISVYLFGRYTNSCEQKV 122
Query: 124 RMLITLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLLL-LFSAFRNFSHFTS 179
L+ +WW+ F S L ++ + + ++V +++ V + LF
Sbjct: 123 LFLLRVWWVFFFVVSCYHLVVDFVLYKKQEMVSVHFVISDLVGVCAGLFLCCSCLWKKGE 182
Query: 180 PNREDKSLSEPLL--AEKNQTE-----LGKAGLLRKLTFSWINPLLSLGYSKPLALEDIP 232
R D L EPLL AE + E KAG+L +++FSW++PL++LG K + ++D+P
Sbjct: 183 GERIDL-LKEPLLSSAESSDNEEVTAPFSKAGILSRMSFSWMSPLITLGNEKIIDIKDVP 241
Query: 233 SLVPED--EASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRT 290
L D E+ F + WD R + L++ + +V+ ++ + A+ A + T
Sbjct: 242 QLDRSDTTESLFWIFRSKLEWDDGERRITTFK---LIKALFLSVW-RDIVLSALLAFVYT 297
Query: 291 IAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350
++ V P L+ FV Y N + +G +V + K+VE TQR FF +++G+ MR
Sbjct: 298 VSCYVAPYLMDNFVQYLNGNRQYKNQGYVLVTTFFVAKLVECQTQRQWFFRGQKAGLGMR 357
Query: 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIG 410
S L+ +Y+K L L ++ H++GEI+N +AVDA R+ F ++ H W L LQ+ LA+
Sbjct: 358 SVLVSMIYEKGLTLPCHSKQGHTSGEIINLMAVDADRISAFSWFMHDPWILVLQVSLALW 417
Query: 411 VLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIK 470
+L+ +GLG++ ++ L N PFAK+ +K QS M ++D R++ TSE+L NMKI+K
Sbjct: 418 ILYKSLGLGSIAAFPATILVMLANYPFAKLEEKFQSSLMKSKDNRMKKTSEVLLNMKILK 477
Query: 471 LQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPL 530
LQ WE KF S I R E WL + + + W +P+ IS+ F C L PL
Sbjct: 478 LQGWEMKFLSKILELRHIEAGWLKKFVYNSSAINSVLWAAPSFISATAFGACLLL-KIPL 536
Query: 531 NASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQK 590
+ I LAT R + P+ +PE +S+++Q KVS +RI +FL +L D V R+
Sbjct: 537 ESGKILAALATFRILQGPIYKLPETISMIVQTKVSLNRIASFLCLDDLQQDVVGRLPSGS 596
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650
S+ +V+I G FSWD IPTLR +N + +A+CG+VG+GKSSLL +ILGE+PKI
Sbjct: 597 SEMAVEISNGTFSWDDSSPIPTLRDMNFKVSQGMNVAICGTVGSGKSSLLSSILGEVPKI 656
Query: 651 SGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
SG + + G AY++Q+ WIQSG + +NIL+GKPM++ YD+ ++AC+L+KD+ D
Sbjct: 657 SGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPMEREWYDRVLEACSLNKDLEILPFHDQ 716
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
T IG+RG+NLSGGQKQRIQ+ARA+Y DADIYLFDDPFSAVDAHT + LF E ++ L K
Sbjct: 717 TVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRHK 776
Query: 771 TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLD 830
TVI VTHQVEFL E D ILV++ G+ITQ+G Y E+L +GT F +LV AH +A L +D
Sbjct: 777 TVIYVTHQVEFLPEADLILVMKDGKITQAGKYHEILDSGTDFMELVGAHTEA---LATID 833
Query: 831 NAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFM 890
+ G A EK T ++ N + KE E K QL ++EE E G VG+ +
Sbjct: 834 SCETGYAS--EKSTT---DKENEVLHHKEKQENGSDNKPSGQLVQEEEREKGKVGFTVYK 888
Query: 891 DYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI-----PKITSGILIGVYAGVS 945
Y+ ++ G +++ L ++ Q F L + YW+ + + P ++ LI VY ++
Sbjct: 889 KYMALAYGGAVIPLILVVQVLFQLLSIGSNYWMTWVTPVSKDVEPPVSGFTLILVYVLLA 948
Query: 946 TASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSIL 1005
AS+ + R+ A G K + F+ IF+A M FFD+TP+GRIL R S+D S+
Sbjct: 949 VASSFCILIRALLVAMTGFKMATELFTQMHLRIFRASMSFFDATPMGRILNRASTDQSVA 1008
Query: 1006 DFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRI 1065
D +P +VA + +L IIG++ V WQVL+V I + A + ++YYI+ AREL R+
Sbjct: 1009 DLRLPGQFAYVAIAAINILGIIGVIVQVAWQVLIVFIPVVAACAWYRQYYISAARELARL 1068
Query: 1066 NGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRV 1125
G +++PV+++ +ET G+ TIR+F+ RF + ++L D + L FH+ G MEWL R+
Sbjct: 1069 AGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLKFHSTGAMEWLCFRL 1128
Query: 1126 EALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVE 1185
E L ++ + LV P G + P L GL+++YA L Q L C L N +ISVE
Sbjct: 1129 ELLSTFAFASSLVILVSAPEGVINPSLAGLAITYALNLNTLQATLIWTLCDLENKMISVE 1188
Query: 1186 RIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTR 1245
R+ Q+ +IP EPP ++E RP SWP +G I + L++RY P+ P+VL G+TCTF G +
Sbjct: 1189 RMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICNLQVRYGPHLPMVLHGLTCTFPGGLK 1248
Query: 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG 1305
G+VGRTG GK+TLI LFR+VEPA G I IDG++I S+GL DLR +LSIIPQ+PT+F G
Sbjct: 1249 TGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILSIGLHDLRSRLSIIPQDPTMFEG 1308
Query: 1306 SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365
++R+NLDPL Y+DD+IW+AL+ CQL + KLDS VS+ G+NWS GQRQL CLGR
Sbjct: 1309 TIRSNLDPLEEYTDDQIWEALDNCQLGDEVRKKELKLDSPVSENGQNWSVGQRQLVCLGR 1368
Query: 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSY 1425
VLLKR+++LVLDEA ASID+ATD ++Q +R F++CTVIT+AHR+ +VIDSDMV++L
Sbjct: 1369 VLLKRSKLLVLDEATASIDTATDNLIQETLRHHFADCTVITIAHRISSVIDSDMVLLLDQ 1428
Query: 1426 GKLLEYDEPSKLMETNSS-FSKLVAEYWSSCRRNSYQN 1462
G + E+D P++L+E SS FSKLVAEY +S S ++
Sbjct: 1429 GLIKEHDSPARLLEDRSSLFSKLVAEYTTSSESKSKRS 1466
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/1450 (39%), Positives = 851/1450 (58%), Gaps = 83/1450 (5%)
Query: 65 VSIVVSACCAVVGIAYLGYCLWNLIAKNDSSMSWLVSTVRGLIWVSLAISL--------- 115
V+IV+S C V+ ++ L K ++ WL+ V ++ L + L
Sbjct: 103 VTIVLSFCSLVLCVSAFFTTRTKL--KLVDTLFWLIHAVTNVVIAVLVLHLKRFASPSHP 160
Query: 116 LVKRSKWI-RMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFR-- 172
L R W+ ++T + +L L + A +V + P+ +LL + +
Sbjct: 161 LTLRIYWVFNFVVTTLFTVSGILHLLSDDPAAASLRADDVASFISFPLTAVLLLVSIKGS 220
Query: 173 -----NFSHFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLA 227
S+ T+P + + + E +N + A + K + W+NPLL GY PL
Sbjct: 221 TGVVVTTSNVTAPAKSNDVVVE---KSENVSLYASASFISKTFWLWMNPLLRKGYKSPLN 277
Query: 228 LEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICAL 287
L+ +P+L PE A F W N+ N VR + + KE F A+ A+
Sbjct: 278 LDQVPTLSPEHRAEKLATLFESKW-----PKPQENSRNPVRTTLIRCFWKEIAFTAVLAI 332
Query: 288 LRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347
+R + VGP+L+ +FV++++ + +G +V L+I K VE + F S++ GM
Sbjct: 333 IRLSVIYVGPVLIQSFVDFTSGKRSSPSQGYYLVLILLIAKFVEVLSTHQFNFNSQKLGM 392
Query: 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFL 407
+RS L+ A+Y+K LKL+ R+ H G+IVNY+AVDA ++ + H W + LQ+
Sbjct: 393 LIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVAA 452
Query: 408 AIGVLFGVVGLG------ALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSE 461
AI +L+ +G L G+ +F++ G K + Q M+ +D R+++T+E
Sbjct: 453 AIVLLYNTLGPSVVTTVIGLTGIFVFILLG------TKRNNRYQFSLMMNRDSRMKATNE 506
Query: 462 ILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLG 521
+LN M++IK Q+WE+ F I RE EF WLS+ A ++ W +P +IS++ F
Sbjct: 507 MLNYMRVIKFQAWEDHFNERILKFREMEFGWLSKFLYSIAGNIIVLWSTPVLISALTFTT 566
Query: 522 CALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581
G L+A T+FT + + EP+R P+++ + Q +S R++A+++ EL+ +
Sbjct: 567 AVFLG-VKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDAYMMSRELSEE 625
Query: 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLY 641
V R + +V+I++G+FSWD E P + +N ++K + A+ G+VG+GKSSLL
Sbjct: 626 TVERSQGCDGNVAVEIKDGSFSWDDEDDEPAIENINFEVKKGELAAIVGTVGSGKSSLLA 685
Query: 642 AILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
++LGE+ K+SG V + G+ AYV+QTSWIQ+G+++DNIL+G PM++++Y++ +K C L+KD
Sbjct: 686 SVLGEMHKLSGKVRVCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKYNEVLKVCCLEKD 745
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ + GD TEIG+RG+NLSGGQKQRIQLARAVY ++D+YL DD FSAVDAHT + +F +
Sbjct: 746 MQIMEFGDQTEIGERGINLSGGQKQRIQLARAVYQESDVYLLDDVFSAVDAHTGSDIFKK 805
Query: 762 CVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRD 821
CV AL+ KT++LVTHQV+FL VDRILV+ G I QSG Y EL+ +G F +LV AH
Sbjct: 806 CVRGALKGKTILLVTHQVDFLHNVDRILVMRDGMIVQSGKYDELVSSGLDFGELVAAHET 865
Query: 822 A---------------ITGLGPL-------DNAGQGGAEKVEKGRTARPEEPNGIY---- 855
+ + P+ ++ Q + KV RT E P +
Sbjct: 866 SMELVEAGSASATAANVPMASPITQRSISIESPRQPKSPKVH--RTTSMESPRVLRTTSM 923
Query: 856 --PRKESSEGEISVKGL---------TQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCL 904
PR E S+K ++L ++EE E+G V ++ + Y + G + L
Sbjct: 924 ESPRLSELNDE-SIKSFLGSNIPEDGSRLIKEEEREVGQVSFQVYKLYSTEAYGWWGMIL 982
Query: 905 GVLAQSGFVGLQAAATYWLAYAIQIPKITS---GILIGVYAGVSTASAVFVYFRSFFAAH 961
V + A+ YWLAY S + I VY ++ S V V R+F+ H
Sbjct: 983 VVFFSVAWQASLMASDYWLAYETSAKNEVSFDATVFIRVYVIIAAVSIVLVCLRAFYVTH 1042
Query: 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGT 1021
LGLK ++ FF NS+ APM FFD+TP GRIL+R S+D + +D IPF I VA T
Sbjct: 1043 LGLKTAQIFFKQILNSLVHAPMSFFDTTPSGRILSRASTDQTNVDIFIPFMIGLVATMYT 1102
Query: 1022 ELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETS 1081
LL+I + W + I + + YY+A++REL R++ TKAPV+++ +E+
Sbjct: 1103 TLLSIFIVTCQYAWPTVFFIIPLGWLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESI 1162
Query: 1082 QGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV 1141
GV+TIRAF F Q +K V+ + + FH NG EWL R+E + + L +ALF+V
Sbjct: 1163 AGVMTIRAFKKQPMFRQENVKRVNANLRMDFHNNGSNEWLGFRLELIGSWVLCISALFMV 1222
Query: 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIV 1201
++P + P VGLSLSY +L G + C++ N ++SVERIKQF IP E +
Sbjct: 1223 MLPSNIIKPENVGLSLSYGLSLNGVLFWAIYLSCFIENKMVSVERIKQFTDIPAEAKWEI 1282
Query: 1202 EDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS 1261
++ RPP +WP+KG I L +K+RYRPN PLVLKG+T G ++GVVGRTGSGK+TLI
Sbjct: 1283 KESRPPPNWPYKGNIRLEDVKVRYRPNTPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQ 1342
Query: 1262 ALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDE 1321
LFRLVEP+GG I+IDG+DIC++GL DLR + IIPQEP LF G+VR+N+DP YSD+E
Sbjct: 1343 VLFRLVEPSGGKIIIDGIDICTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEKYSDEE 1402
Query: 1322 IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381
IWK+LE+CQLK ++S P KLDS V+D GENWS GQRQL CLGRV+LKR+RIL LDEA A
Sbjct: 1403 IWKSLERCQLKDVVASKPEKLDSLVADNGENWSVGQRQLLCLGRVMLKRSRILFLDEATA 1462
Query: 1382 SIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETN 1441
S+DS TDA++Q+IIR++FS+CT+I++AHR+PTV+D D V+V+ GK EYD P +L+E
Sbjct: 1463 SVDSQTDAMIQKIIREDFSDCTIISIAHRIPTVMDCDRVLVIDAGKAKEYDSPVRLLERQ 1522
Query: 1442 SSFSKLVAEY 1451
S F+ LV EY
Sbjct: 1523 SLFAALVQEY 1532
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1025 bits (2650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/1272 (42%), Positives = 795/1272 (62%), Gaps = 24/1272 (1%)
Query: 193 AEKNQ--TELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKF--A 248
AE ++ T AG L ++FSW++PL+ LG K + ED+P + D A + F
Sbjct: 223 AEDDEVVTPFSNAGFLSHVSFSWMSPLIVLGNEKIIDSEDVPQVDNSDRAEKLFWIFRSK 282
Query: 249 YAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN 308
WD R + L++ + +V+ ++ + + A + T++ V P L+ FV Y N
Sbjct: 283 LEWDDGERRITTYK---LIKALFFSVW-RDILLSTLFAFVYTVSCYVAPYLMDTFVQYLN 338
Query: 309 RGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLG 368
+ +G+ +V + K+VE +R+ +F +++G+ MRS L+ +Y+K L L
Sbjct: 339 GQRQYSNQGVVLVTTFFVAKLVECQARRNWYFRLQKAGIGMRSVLVSMIYEKGLTLPCYS 398
Query: 369 RKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428
++ H++GEI+N + VDA R+ F ++ H W L LQ+ LA+ +L+ +GLG++
Sbjct: 399 KQGHTSGEIINLMTVDAERISAFSWYMHDPWILVLQISLALLILYRSLGLGSIAAFAATF 458
Query: 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREK 488
+ L N+P AK+ +K Q M ++D R++ TSE L NM+I+KLQ WE KF I R
Sbjct: 459 LVMLGNIPLAKLEEKFQGNLMESKDNRMKKTSEALLNMRILKLQGWEMKFLHKILDLRGI 518
Query: 489 EFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEP 548
E WL + A + + W +P+ +S+ F C L PL + I LAT R + P
Sbjct: 519 EAGWLKKFVYNSAAISSVLWAAPSFVSATAFGACMLL-KIPLESGKIIAALATFRILQTP 577
Query: 549 VRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPEL 608
+ +P+ +S+++Q KVS DRI FL +L D + R+ S V++ G FSWD
Sbjct: 578 IYKLPDTISMIVQTKVSLDRIATFLCLDDLQQDGMERLPSGSSKMDVEVSNGAFSWDDSS 637
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668
IPTL+ + I IA+CG+VG+GKSSLL +ILGE+PKISG + + G AY++Q+ W
Sbjct: 638 PIPTLKDIRFKIPHGMNIAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPW 697
Query: 669 IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728
IQSG + +NIL+GKPM + Y + ++AC+L+KD+ F D T IG+RG+NLSGGQKQRI
Sbjct: 698 IQSGKVEENILFGKPMQREWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGGQKQRI 757
Query: 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRI 788
Q+ARA+Y DADIYLFDDPFSAVDAHT + LF E ++ L KTVI VTHQ+EFL E D I
Sbjct: 758 QIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLRNKTVIYVTHQLEFLPEADLI 817
Query: 789 LVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARP 848
LV++ G+ITQ+G Y E+L +GT F +LV AH DA L +D+ +G A ++
Sbjct: 818 LVMKDGRITQAGKYNEILESGTDFMELVGAHTDA---LAAVDSYEKGSA----SAQSTTS 870
Query: 849 EEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLA 908
+E ++ E S KG QL ++EE E G VG+ + Y+ ++ G +L+ + ++
Sbjct: 871 KESKVSNDEEKQEEDLPSPKG--QLVQEEEREKGKVGFTVYQKYMKLAYGGALVPIILVV 928
Query: 909 QSGFVGLQAAATYWLAYAIQI-----PKITSGILIGVYAGVSTASAVFVYFRSFFAAHLG 963
Q F L + YW+A+ + P ++ LI VY ++TAS+ + R+ +A G
Sbjct: 929 QILFQVLNIGSNYWMAWVTPVSKDVKPLVSGSTLILVYVFLATASSFCILVRAMLSAMTG 988
Query: 964 LKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023
K + F+ IF+A M FFD+TP+GRIL R S+D S +D +P +A + +
Sbjct: 989 FKIATELFNQMHFRIFRASMSFFDATPIGRILNRASTDQSAVDLRLPSQFSNLAIAAVNI 1048
Query: 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQG 1083
L IIG+M V WQVL+V I + A + ++YYI+ AREL R++G +++P++ + +ET G
Sbjct: 1049 LGIIGVMGQVAWQVLIVFIPVIAACTWYRQYYISAARELARLSGISRSPLVQHFSETLSG 1108
Query: 1084 VVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLI 1143
+ TIR+F+ RF + ++L D + L FH MEWL R++ L + + + LV +
Sbjct: 1109 ITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSV 1168
Query: 1144 PRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVED 1203
P G + P GL+++YA L Q L C L N +ISVER+ Q++ IP EP ++E
Sbjct: 1169 PEGVINPSFAGLAVTYALNLNSLQATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIES 1228
Query: 1204 KRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISAL 1263
RP SWP +G I + L++RY P+ P+VL+G+TCTF G + G+VGRTG GK+TLI L
Sbjct: 1229 TRPEKSWPCRGEITICNLQVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTL 1288
Query: 1264 FRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIW 1323
FR+VEPA G I IDG++I ++GL DLR +LSIIPQEPT+F G+VR+NLDPL Y+DD+IW
Sbjct: 1289 FRIVEPAAGEIRIDGINILTIGLHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIW 1348
Query: 1324 KALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASI 1383
+AL+KCQL I KLDS VS+ G+NWS GQRQL CLGRVLLKR+++L+LDEA AS+
Sbjct: 1349 EALDKCQLGDEIRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKVLILDEATASV 1408
Query: 1384 DSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME-TNS 1442
D+ATD ++Q +RQ FS CTVIT+AHR+ +VIDSDMV++L G + E+D P++L+E +S
Sbjct: 1409 DTATDTLIQETLRQHFSGCTVITIAHRISSVIDSDMVLLLDQGLIEEHDSPARLLEDKSS 1468
Query: 1443 SFSKLVAEYWSS 1454
SFSKLVAEY +S
Sbjct: 1469 SFSKLVAEYTAS 1480
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1012 bits (2617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/1433 (39%), Positives = 843/1433 (58%), Gaps = 72/1433 (5%)
Query: 64 CVSIVVSACCAVVGI-AYLGYCL----WNLIAKNDSSMSWLVSTVRGLIWVSLAISLLVK 118
V++++S C V+ + A+ G WNLI + WL+ V L+ I++LV
Sbjct: 104 AVTVLLSFCSVVLCVLAFTGKRRTQRPWNLI----DPLFWLIHAVTHLV-----IAVLVL 154
Query: 119 RSKWIRML-----ITLWWMS----FSLLVLALNIEILARTYTI----NVVYILPLPVNLL 165
K L + ++W+S SL + L+ T +V P+
Sbjct: 155 HQKRFAALNHPLSLRIYWISSFVLTSLFAVTGIFHFLSDAATSLRAEDVASFFSFPLTAF 214
Query: 166 LLFSAFRNFSHF-TSPNREDKSLSEPLLAEK--NQTELGKAGLLRKLTFSWINPLLSLGY 222
LL ++ R + T+ S+ + EK N + A + K + W+NPLLS GY
Sbjct: 215 LLIASVRGITGLVTAETNSPTKPSDAVSVEKSDNVSLYASASVFSKTFWLWMNPLLSKGY 274
Query: 223 SKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFI 282
PL LE +P+L PE +A F +W S N+ + +R + + KE +F
Sbjct: 275 KSPLTLEQVPTLSPEHKAERLALLFESSW-----PKPSENSSHPIRTTLLRCFWKEILFT 329
Query: 283 AICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGS 342
AI A++R + VGP+L+ +FV++++ + +G +V L++ K VE T F S
Sbjct: 330 AILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQGYYLVLILLVAKFVEVLTTHQFNFDS 389
Query: 343 RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLA 402
++ GM +RS L+ A+Y+K LKL+ R+ H G+IVNY+AVDA ++ + H W +
Sbjct: 390 QKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMP 449
Query: 403 LQLFLAIGVLFGVVGLG------ALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERL 456
LQ+ +A+ +L+G +G L G+ +F++ G + Q M +D R+
Sbjct: 450 LQVTVALVLLYGSLGASVITAVIGLTGVFVFILLG------TQRNNGYQFSLMGNRDSRM 503
Query: 457 RSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISS 516
++T+E+LN M++IK Q+WE F I R+ EF WLS+ A ++ W +P +IS+
Sbjct: 504 KATNEMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFLYSIAGNIIVLWSTPVLISA 563
Query: 517 VIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH 576
+ F AL L+A T+FT + + EP+R P+++ + Q +S R++++++
Sbjct: 564 LTF-ATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDSYMMSK 622
Query: 577 ELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGK 636
EL+ D V R + +V++++G+FSWD E P L +N +K + A+ G+VG+GK
Sbjct: 623 ELSEDAVERALGCDGNTAVEVRDGSFSWDDEDNEPALSDINFKVKKGELTAIVGTVGSGK 682
Query: 637 SSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKAC 696
SSLL ++LGE+ +ISG V + GS YV+QTSWI++G+++DNIL+G PM + +Y+K + C
Sbjct: 683 SSLLASVLGEMHRISGQVRVCGSTGYVAQTSWIENGTVQDNILFGLPMVREKYNKVLNVC 742
Query: 697 ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA 756
+L+KD+ + GD TEIG+RG+NLSGGQKQRIQLARAVY + D+YL DD FSAVDAHT +
Sbjct: 743 SLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQECDVYLLDDVFSAVDAHTGS 802
Query: 757 TLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+F +CV AL+ KTV+LVTHQV+FL VD ILV+ G+I +SG Y EL+ +G F +LV
Sbjct: 803 DIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIVESGKYDELVSSGLDFGELV 862
Query: 817 NAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEIS---------- 866
AH ++ L AG A RT P P+ PR +S
Sbjct: 863 AAHETSME----LVEAGADSAAVATSPRT--PTSPHASSPRTSMESPHLSDLNDEHIKSF 916
Query: 867 -----VKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATY 921
V+ ++L ++EE E G V + Y + G + L + + G A+ Y
Sbjct: 917 LGSHIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYGWWGIVLVLFFSLTWQGSLMASDY 976
Query: 922 WLAYAIQIPKITS---GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSI 978
WLAY S + I Y ++ S V V RS++ HLGLK ++ FF NSI
Sbjct: 977 WLAYETSAKNAISFDASVFILGYVIIALVSIVLVSIRSYYVTHLGLKTAQIFFRQILNSI 1036
Query: 979 FKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVL 1038
APM FFD+TP GRIL+R S+D + +D IPF + V + T LL+I + W
Sbjct: 1037 LHAPMSFFDTTPSGRILSRASTDQTNVDILIPFMLGLVVSMYTTLLSIFIVTCQYAWPTA 1096
Query: 1039 VVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQ 1098
I + + YY+A++REL R++ TKAP++++ +E+ GV+TIR+F + F Q
Sbjct: 1097 FFVIPLGWLNIWYRNYYLASSRELTRMDSITKAPIIHHFSESIAGVMTIRSFRKQELFRQ 1156
Query: 1099 NYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLS 1158
+K V+ + + FH NG EWL R+E + + L +ALF+VL+P + P VGLSLS
Sbjct: 1157 ENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNVIRPENVGLSLS 1216
Query: 1159 YAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIEL 1218
Y +L F C++ N ++SVERIKQF IP E ++ PPS+WPF G + L
Sbjct: 1217 YGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPSESEWERKETLPPSNWPFHGNVHL 1276
Query: 1219 RQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278
LK+RYRPN PLVLKGIT G +VGVVGRTGSGK+TLI LFRLVEP+GG I+IDG
Sbjct: 1277 EDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDG 1336
Query: 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSL 1338
+DI ++GL DLR + IIPQEP LF G+VR+N+DP YSD+EIWK+LE+CQLK +++
Sbjct: 1337 IDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEQYSDEEIWKSLERCQLKDVVATK 1396
Query: 1339 PNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQE 1398
P KLDS V D GENWS GQRQL CLGRV+LKR+R+L LDEA AS+DS TDA++Q+IIR++
Sbjct: 1397 PEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFLDEATASVDSQTDAVIQKIIRED 1456
Query: 1399 FSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451
F++CT+I++AHR+PTV+D D V+V+ GK E+D P++L+E S F+ LV EY
Sbjct: 1457 FASCTIISIAHRIPTVMDGDRVLVIDAGKAKEFDSPARLLERPSLFAALVQEY 1509
|
Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 943 bits (2437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/1095 (45%), Positives = 692/1095 (63%), Gaps = 53/1095 (4%)
Query: 381 IAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKI 440
++VD R+ +F ++ + W L +Q+F AI +L +GLGAL LV L+ N P ++
Sbjct: 1 MSVDVQRITDFIWYVNSIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPLTRL 60
Query: 441 LQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK 500
+ QS+ M A+D+R+++TSEIL NMKI+KLQ+W+ +F + +++ R+KE+ L ++ +
Sbjct: 61 QRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQ 120
Query: 501 AYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMI 560
+ T I W +P++IS V F+ C L G L A + + LAT + + P+ +P+ LS ++
Sbjct: 121 DFTTFILWGAPSLISVVTFVTCMLMG-VKLTAGAVLSALATFQMLQSPIFGLPDLLSALV 179
Query: 561 QVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620
Q KVS DRI ++L E D V S ++ SV+I+ G FSW+PE + PTL + L +
Sbjct: 180 QSKVSADRIASYLQQSETQKDAVEYCSNDHTEFSVEIENGAFSWEPESSRPTLDDIELKV 239
Query: 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILY 680
K K+A+CG+VG+GKSSL +ILGEI K+ GTV + G AYV Q+ WI SG+IRDNIL+
Sbjct: 240 KSGMKVAICGAVGSGKSSLPSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNILF 299
Query: 681 GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740
G + +Y++ +KACAL KD F +GDLTEIG+RG+N+SGGQKQRIQ+ARAVY +ADI
Sbjct: 300 GSIYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNADI 359
Query: 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
YL DDPFSAVDAHT LF +C+M L+ KTV+ VTHQVEFL D ILV++ G++ Q+G
Sbjct: 360 YLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQAG 419
Query: 801 NYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKES 860
++ELL FE L
Sbjct: 420 KFEELLKQNIGFEVLTQC-----------------------------------------D 438
Query: 861 SEGEISV---KGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQA 917
SE IS K +L +DEE E G +G + ++ YL KG L+ +LAQS F LQ
Sbjct: 439 SEHNISTENKKKEAKLVQDEETEKGVIGKEVYLTYLTTVKGGLLVPFIILAQSCFQMLQI 498
Query: 918 AATYWLAY-----AIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFS 972
A+ YW+A+ A IPK+ G ++ VYA ++ S++ V R+ A GL ++ FFS
Sbjct: 499 ASNYWMAWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFFS 558
Query: 973 GFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF 1032
SIF+APM +FDSTP GRIL R S+D S+LD ++ + + A S +++ I +M+
Sbjct: 559 RMLCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQ 618
Query: 1033 VTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNM 1092
V WQV V+ I VA F QRYY T REL R++G +AP++++ AE+ G TIRAF+
Sbjct: 619 VAWQVCVIFIPVAVACVFYQRYYTPTERELSRMSGVERAPILHHFAESLAGATTIRAFDQ 678
Query: 1093 VDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGL 1152
DRF + L L+D + +FH MEWL R+ L + + + LV +P G + P +
Sbjct: 679 RDRFISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSI 738
Query: 1153 VGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPF 1212
GL ++Y +L Q + C N +ISVERI Q IP E P +++D+RP +WP
Sbjct: 739 AGLGVTYGLSLNVLQATVIWNICNAENKMISVERILQHSKIPSEAPLVIDDQRPLDNWPN 798
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
G I R L++RY + P VLK ITC F G ++GVVGRTGSGK+TLI ALFR+VEP+ G
Sbjct: 799 VGSIVFRDLQVRYAEHFPAVLKNITCAFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSHG 858
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLK 1332
+I+ID VDI +GL DLR +L IIPQ+ LF G++R NLDPL Y+D EIW+AL+KCQL
Sbjct: 859 TIVIDNVDITKIGLHDLRSRLGIIPQDNALFDGTIRLNLDPLAQYTDREIWEALDKCQLG 918
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQ 1392
I + KLD++V + GENWS GQRQL CLGRVLLK++ ILVLDEA AS+DSATD ++Q
Sbjct: 919 DVIRAKDEKLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQ 978
Query: 1393 RIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSS-FSKLVAEY 1451
+II QEF + TV+T+AHR+ TVI+SD+V+VLS G++ E+D P+KL++ S FSKL+ EY
Sbjct: 979 KIINQEFKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEY 1038
Query: 1452 WSSCRRNSYQNLNNF 1466
S R N + N+
Sbjct: 1039 --SLRSNHFAGSNDL 1051
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1467 | ||||||
| 255572985 | 1475 | multidrug resistance-associated protein | 0.991 | 0.985 | 0.745 | 0.0 | |
| 359482526 | 1469 | PREDICTED: ABC transporter C family memb | 0.996 | 0.995 | 0.736 | 0.0 | |
| 359482528 | 1465 | PREDICTED: ABC transporter C family memb | 0.991 | 0.993 | 0.721 | 0.0 | |
| 359482524 | 1462 | PREDICTED: ABC transporter C family memb | 0.991 | 0.995 | 0.727 | 0.0 | |
| 356528857 | 1469 | PREDICTED: ABC transporter C family memb | 0.983 | 0.982 | 0.698 | 0.0 | |
| 357515353 | 1463 | ABC transporter C family member [Medicag | 0.985 | 0.988 | 0.686 | 0.0 | |
| 356522202 | 1951 | PREDICTED: ABC transporter C family memb | 0.981 | 0.738 | 0.691 | 0.0 | |
| 356526035 | 1465 | PREDICTED: ABC transporter C family memb | 0.990 | 0.991 | 0.692 | 0.0 | |
| 356528827 | 1494 | PREDICTED: ABC transporter C family memb | 0.986 | 0.968 | 0.669 | 0.0 | |
| 297743104 | 2772 | unnamed protein product [Vitis vinifera] | 0.927 | 0.490 | 0.684 | 0.0 |
| >gi|255572985|ref|XP_002527423.1| multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative [Ricinus communis] gi|223533233|gb|EEF34989.1| multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2231 bits (5781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1092/1464 (74%), Positives = 1240/1464 (84%), Gaps = 10/1464 (0%)
Query: 9 GGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRRECVSIV 68
G LSW CE + DLGS C Q IID+INLVF VFYL LL+GS RK+ G RR+ +S+V
Sbjct: 16 GELSWICEEKLDLGSPCTQRIIIDIINLVFLGVFYLFLLLGSIRKHQVSGSNRRDWISVV 75
Query: 69 VSACCAVVGIAYLGYCLWNLIAKNDS--SMSWLVSTVRGLIWVSLAISLLVKRSKWIRML 126
VS CC ++ IAYLG LW+LIAKN S +SWLV VRG+IW+S+A+SLLV RS+W R+L
Sbjct: 76 VSICCTLISIAYLGVGLWDLIAKNHSFNHLSWLVYLVRGIIWISVAVSLLVTRSRWNRIL 135
Query: 127 ITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPNREDKS 186
+T+WW+SFSLL ALNIEILAR +I V+ ILP PVN LLL A RNFSHF+S K+
Sbjct: 136 VTVWWVSFSLLASALNIEILARANSIQVLDILPWPVNFLLLLCALRNFSHFSSQQASYKN 195
Query: 187 LSEPLLAEK--NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAY 244
L EPLL K +L A L LTFSWINPLL LGYSKPL EDIPSL+PEDEA AY
Sbjct: 196 LFEPLLGAKEVKNQKLAHASFLSNLTFSWINPLLKLGYSKPLDDEDIPSLLPEDEADIAY 255
Query: 245 QKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFV 304
QKFA+AWDSL+RENNSN+ GNLV + + V+LKENIFI ALLR IAV V PLLLYAFV
Sbjct: 256 QKFAHAWDSLIRENNSNDTGNLVLEAVAKVHLKENIFIGTYALLRAIAVAVLPLLLYAFV 315
Query: 305 NYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKL 364
NYSN ++NL +GLSIVGCLI+ KVVES +QR FF +R+SGMR+RSALMVAVYQKQL L
Sbjct: 316 NYSNLDQQNLYQGLSIVGCLILVKVVESLSQRRSFFLARQSGMRIRSALMVAVYQKQLNL 375
Query: 365 SSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGL 424
SSL R++HSTGE VNYIAVDAYRMGEFP+WFH TW+ LQLFL+I +LFGVVGLGA+ GL
Sbjct: 376 SSLARRRHSTGEFVNYIAVDAYRMGEFPWWFHATWAYVLQLFLSIIILFGVVGLGAVTGL 435
Query: 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES 484
V LICGLLNVPFA+ LQKCQS+FMIAQDERLR+TSEILNNMKIIKLQSWEEKFKS IES
Sbjct: 436 VPLLICGLLNVPFARFLQKCQSKFMIAQDERLRATSEILNNMKIIKLQSWEEKFKSYIES 495
Query: 485 RREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRS 544
R+ EFKWL+E+Q++K YGT++YW+SPTIISSV+F+GCAL SAPLN+STIFTVLATLRS
Sbjct: 496 LRDTEFKWLTESQIKKTYGTILYWLSPTIISSVVFVGCALFRSAPLNSSTIFTVLATLRS 555
Query: 545 MGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSW 604
M EPVRMIPEALSI+IQVKVSFDRIN FLLD EL N+ + S S S+ ++ G FSW
Sbjct: 556 MAEPVRMIPEALSILIQVKVSFDRINNFLLDDELKNESISTNSSYNSGESITVEGGKFSW 615
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVS 664
DPEL++PTLR VNLDIK QK AVCG VGAGKSSLLYA+LGEIPKISGTVN++GSIAYVS
Sbjct: 616 DPELSMPTLREVNLDIKRGQKFAVCGPVGAGKSSLLYAMLGEIPKISGTVNVFGSIAYVS 675
Query: 665 QTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724
QTSWIQSG++RDNILYGKPMD+ +Y++AIKACALDKDIN+F+HGDLTEIGQRGLN+SGGQ
Sbjct: 676 QTSWIQSGTVRDNILYGKPMDQEKYERAIKACALDKDINSFNHGDLTEIGQRGLNMSGGQ 735
Query: 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784
KQRIQLARAVYNDADIYL DDPFSAVDAHTAA LFN+C+M ALE KTVILVTHQV+FLS
Sbjct: 736 KQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCIMTALENKTVILVTHQVDFLSS 795
Query: 785 VDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGR 844
VD+ILV+EGGQITQSG+Y+ELL+A TAFEQLVNAH+D++T LG D + +G + K +
Sbjct: 796 VDQILVMEGGQITQSGSYEELLMACTAFEQLVNAHKDSVTVLGSYDKS-RGESLKAD--- 851
Query: 845 TARPEEPNGIYPRKESSEGEISVKGLT--QLTEDEEMEIGDVGWKPFMDYLNVSKGMSLL 902
R E+ + K++SEGEIS+KG+ QLTE+EE IG+VGWKPF+DY+ +SKG
Sbjct: 852 IVRQEDFSVSSHAKQNSEGEISMKGVAGVQLTEEEEKGIGNVGWKPFLDYILISKGTLFA 911
Query: 903 CLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHL 962
L L+ GF+GLQAAATYWLAYA+QIP+I S +LIGVY +S+ SA FVY RS+ A L
Sbjct: 912 SLSTLSICGFIGLQAAATYWLAYAVQIPEIRSSMLIGVYTLISSLSASFVYLRSYLAVLL 971
Query: 963 GLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTE 1022
GLKASK+FFSGFTN+IFKAPMLFFDSTPVGRILTR SSDLSILDFDIPFS VF A E
Sbjct: 972 GLKASKSFFSGFTNTIFKAPMLFFDSTPVGRILTRASSDLSILDFDIPFSYVFAAGGLVE 1031
Query: 1023 LLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQ 1082
L+ IGIM VTWQVLV+A+ A+V +++Q YY+A+ARELIRINGTTKAPVMNY AETS
Sbjct: 1032 LVVTIGIMASVTWQVLVIAVLAIVGAKYIQDYYLASARELIRINGTTKAPVMNYAAETSL 1091
Query: 1083 GVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVL 1142
GVVTIRAF MV+RFFQNYLKLVD DA LFF +NG MEWLI+R EALQN+TLFTAAL LVL
Sbjct: 1092 GVVTIRAFKMVNRFFQNYLKLVDKDAVLFFLSNGAMEWLIIRTEALQNVTLFTAALLLVL 1151
Query: 1143 IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202
+P+G V PGL+GLSLSYA +LTGTQVF++RWYC LANY+ISVERIKQFMHIP EPPA+VE
Sbjct: 1152 LPKGVVTPGLIGLSLSYALSLTGTQVFVTRWYCNLANYVISVERIKQFMHIPSEPPAVVE 1211
Query: 1203 DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISA 1262
D RPPSSWP +GRIEL+ LKIRYRPNAPLVLKGI C F EGTRVGVVGRTGSGKTTLISA
Sbjct: 1212 DNRPPSSWPPEGRIELQDLKIRYRPNAPLVLKGINCIFEEGTRVGVVGRTGSGKTTLISA 1271
Query: 1263 LFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEI 1322
LFRLVEPA G ILIDG+DICS+GL+DLR KLSIIPQE TLFRGSVRTNLDPLGLYSD EI
Sbjct: 1272 LFRLVEPASGRILIDGLDICSIGLRDLRTKLSIIPQEATLFRGSVRTNLDPLGLYSDPEI 1331
Query: 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
W+ALEKCQLKTTISSLPN+LDSSVSDEGENWSAGQRQLFCLGRVLL+RNRILVLDEA AS
Sbjct: 1332 WEALEKCQLKTTISSLPNQLDSSVSDEGENWSAGQRQLFCLGRVLLRRNRILVLDEATAS 1391
Query: 1383 IDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNS 1442
IDSATDAILQRIIRQEFS CTVITVAHRVPTVIDSDMVMVLSYGKL EYDEP KLME NS
Sbjct: 1392 IDSATDAILQRIIRQEFSMCTVITVAHRVPTVIDSDMVMVLSYGKLEEYDEPLKLMEINS 1451
Query: 1443 SFSKLVAEYWSSCRRNSYQNLNNF 1466
SFSKLVAEYWSSCRRNS +N +
Sbjct: 1452 SFSKLVAEYWSSCRRNSEKNFGKY 1475
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482526|ref|XP_002276212.2| PREDICTED: ABC transporter C family member 8-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2185 bits (5661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1086/1474 (73%), Positives = 1230/1474 (83%), Gaps = 12/1474 (0%)
Query: 1 MAFLGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRI 60
MAFL GLSW C E D+GSFCIQ +I+DV+NL+F VF + L++GS RK+
Sbjct: 1 MAFLKNSFSGLSWMCGEELDMGSFCIQRSILDVLNLLFLSVFCVLLVIGSIRKHEISRCS 60
Query: 61 RRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSSM--SWLVSTVRGLIWVSLAISLLVK 118
RR+ VS VS CCA++ I YL W+L AKN+ SW V VRGLIW+SL +SLLV+
Sbjct: 61 RRDWVSRGVSICCALISIGYLSAGFWDLYAKNEGPRLSSWPVYFVRGLIWISLTVSLLVQ 120
Query: 119 RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFT 178
RSKW R+L ++WWMSF LLV ALNIEI+ T++I + ++P VN LLLF AFRN
Sbjct: 121 RSKWTRILSSIWWMSFFLLVSALNIEIIVETHSIQIFVMVPWLVNFLLLFCAFRNICPSL 180
Query: 179 SPNREDKSLSEPLLAE---KNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLV 235
S DKS+SEPLLA+ K+ + K+ + KLTFSWINPLL LGYSKPL LEDIPSL
Sbjct: 181 SLEASDKSVSEPLLAKNPVKSSIDFSKSSFISKLTFSWINPLLRLGYSKPLVLEDIPSLT 240
Query: 236 PEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVV 295
PEDEA AY+ FA+AW+ L RE NS N NLV + + VY KE +F+AICALLRTI+VVV
Sbjct: 241 PEDEAELAYKNFAHAWELLQREKNSTNTSNLVLRALAKVYWKETVFVAICALLRTISVVV 300
Query: 296 GPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355
PLLLYAFVNYSNR EENL EGL +VGCL+I KVVES +QRH F SRRSGMRMRSALMV
Sbjct: 301 SPLLLYAFVNYSNRKEENLSEGLFLVGCLVIAKVVESVSQRHWFLDSRRSGMRMRSALMV 360
Query: 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGV 415
AVYQKQLKLSSLGR++HS GEIVNYI VDAYRM EF +WFH WS LQLFL+IGVLF V
Sbjct: 361 AVYQKQLKLSSLGRRRHSAGEIVNYIVVDAYRMAEFLWWFHSMWSYMLQLFLSIGVLFVV 420
Query: 416 VGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWE 475
VGLGAL GLV ICG LNVPFAKIL+ CQ+E M+AQD RLRSTSEILN+MK+IKLQSWE
Sbjct: 421 VGLGALSGLVPLFICGFLNVPFAKILKTCQTELMMAQDRRLRSTSEILNSMKVIKLQSWE 480
Query: 476 EKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTI 535
+KFK+LIES RE EFKWL+EAQ +K Y TV+YW+SPTIISSVIF+GCAL G APLNASTI
Sbjct: 481 DKFKNLIESLREVEFKWLAEAQYKKCYNTVLYWLSPTIISSVIFVGCALLG-APLNASTI 539
Query: 536 FTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSV 595
FT+LA LR MGEPVRMIPEALS +IQVKVSFDR+NAFLLD EL ++++R ++ S SV
Sbjct: 540 FTILAALRCMGEPVRMIPEALSALIQVKVSFDRLNAFLLDDELKSEEIRHVTWPNSGHSV 599
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655
KI G FSW+PE AI TLR VNL ++ KIA+CG VGAGKSSLL+AILGEIPKISGTV+
Sbjct: 600 KINAGKFSWEPESAILTLREVNLTVQRGHKIAICGPVGAGKSSLLHAILGEIPKISGTVD 659
Query: 656 LYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
++GSIAYVSQTSWIQSG+IRDNILYGKPMD +Y+KAIKACALDKDIN+FDHGD TEIG
Sbjct: 660 VFGSIAYVSQTSWIQSGTIRDNILYGKPMDTTKYEKAIKACALDKDINSFDHGDETEIGH 719
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
RGLN+SGGQKQR+QLARAVYNDADIYL DDPFSAVDAHTAA LFNECVMAAL KTVILV
Sbjct: 720 RGLNMSGGQKQRMQLARAVYNDADIYLLDDPFSAVDAHTAAILFNECVMAALAHKTVILV 779
Query: 776 THQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQG 835
THQVEFLSEVD+ILV+E GQITQSG+Y+ELL +GTAFEQLVNAH++A+T L N Q
Sbjct: 780 THQVEFLSEVDKILVMEAGQITQSGSYEELLTSGTAFEQLVNAHKNAVTVL-EFSNDEQV 838
Query: 836 GAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGL--TQLTEDEEMEIGDVGWKPFMDYL 893
+K+++ E+ +G KE+SEGEIS+KGL QLTE+EE EIGDVGWKPF+DYL
Sbjct: 839 EPQKLDQNLL---EKSHGSLFTKENSEGEISMKGLPGVQLTEEEETEIGDVGWKPFLDYL 895
Query: 894 NVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVY 953
VS GM L+ LG++ QSGF+ LQAA+TYWLA I+IP I++ +LIGVY +ST SAVFVY
Sbjct: 896 LVSNGMLLMSLGIITQSGFIALQAASTYWLALGIRIPNISNTLLIGVYTAISTLSAVFVY 955
Query: 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSI 1013
FRSF AA LGLKASKAFF+GFTNSIF APMLFFDSTPVGRILTR SSD S++DFDIPFSI
Sbjct: 956 FRSFCAARLGLKASKAFFAGFTNSIFNAPMLFFDSTPVGRILTRASSDFSVVDFDIPFSI 1015
Query: 1014 VFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPV 1073
+FV A+G EL+ IGIM VTWQVL VAIFAMV +VQ YY+A+ARELIRINGTTKAPV
Sbjct: 1016 IFVVAAGLELITTIGIMASVTWQVLFVAIFAMVTANYVQGYYLASARELIRINGTTKAPV 1075
Query: 1074 MNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL 1133
MNY AETS GVVTIRAF MVDRFFQNYL+L+D DA LFF++N +EWL+LR+E LQNLTL
Sbjct: 1076 MNYAAETSLGVVTIRAFKMVDRFFQNYLELIDTDAKLFFYSNAAIEWLVLRIEMLQNLTL 1135
Query: 1134 FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI 1193
TAAL LVL+P+G V PGLVGLSLSYA LTG+QVFLSRWYC L+NYI+SVERIKQFM I
Sbjct: 1136 VTAALLLVLLPKGVVVPGLVGLSLSYALALTGSQVFLSRWYCNLSNYIVSVERIKQFMRI 1195
Query: 1194 PPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTG 1253
PPEPPAIVE KRPPSSWP KGRIEL+ LKI+YRPNAPLVLKGITCTF EGTRVGVVGRTG
Sbjct: 1196 PPEPPAIVEGKRPPSSWPSKGRIELQNLKIKYRPNAPLVLKGITCTFKEGTRVGVVGRTG 1255
Query: 1254 SGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP 1313
SGKTTLISALFRLVEP G ILIDG+DICS+GLKDLR+KLSIIPQE TLF+GS+RTNLDP
Sbjct: 1256 SGKTTLISALFRLVEPESGKILIDGLDICSIGLKDLRMKLSIIPQEATLFKGSIRTNLDP 1315
Query: 1314 LGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373
LGLYSD+EIW+ALEKCQLK TISSLPN LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI
Sbjct: 1316 LGLYSDNEIWEALEKCQLKATISSLPNLLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1375
Query: 1374 LVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDE 1433
LVLDEA ASID+ATDAILQRIIRQEF NCTVITVAHRVPTVIDSDMVMVLSYGKL+EYDE
Sbjct: 1376 LVLDEATASIDAATDAILQRIIRQEFLNCTVITVAHRVPTVIDSDMVMVLSYGKLVEYDE 1435
Query: 1434 PSKLMETNSSFSKLVAEYWSSCRRNSYQNLNNFQ 1467
PS LMETNS FSKLVAEYWSS RRNS QN N ++
Sbjct: 1436 PSNLMETNSFFSKLVAEYWSSRRRNSSQNFNYYK 1469
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482528|ref|XP_002276236.2| PREDICTED: ABC transporter C family member 8-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2159 bits (5594), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1063/1474 (72%), Positives = 1234/1474 (83%), Gaps = 19/1474 (1%)
Query: 1 MAFLGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRI 60
MA + LGG SW D+G FC+Q+TI+DV+NL+F VF + L++GS RKN +
Sbjct: 1 MASWDSSLGGFSWNSGEGLDMGFFCVQTTILDVLNLLFLSVFCVILVMGSVRKNVIFEHS 60
Query: 61 RRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVK 118
RR+ VS VS CCAVV I YL LW+L KN+ S +SW VRGL+W+SLA SLL++
Sbjct: 61 RRDWVSGGVSICCAVVSIGYLSAGLWDLFVKNEGSGHLSWWAYFVRGLVWISLAASLLIQ 120
Query: 119 RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFT 178
R K IR+L +LWW++F LL ALNIEIL +T+ I V ++P V+ LLLF AFRN H
Sbjct: 121 RPKCIRILSSLWWLAFFLLGSALNIEILVKTHNIQVFDMVPWLVSFLLLFCAFRNICHHD 180
Query: 179 SPNREDKSLSEPLLA---EKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLV 235
SP+ D+S+SEPLL EK+ ELGK+ + KLTFSWINPLL LGYSKPL LEDIPSLV
Sbjct: 181 SPDTPDRSVSEPLLGKKPEKSSVELGKSSFISKLTFSWINPLLCLGYSKPLVLEDIPSLV 240
Query: 236 PEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVV 295
ED A AYQKFA+AW+ L +E NN+ NLV + + VY KE + I AL +TI+VVV
Sbjct: 241 SEDGAELAYQKFAHAWEQLQKEKTPNNSCNLVLQALARVYWKETLSAGIFALFKTISVVV 300
Query: 296 GPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355
PLLLYAFV YSN EN EG+ +VGCL++ K+VES +QRH F SRRSGMRMRS+LMV
Sbjct: 301 SPLLLYAFVKYSNHSGENWHEGVFLVGCLVLNKLVESLSQRHWFLNSRRSGMRMRSSLMV 360
Query: 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGV 415
AVYQKQLKLSSLGR +HSTGEIVNYIA+DAYRMGEFP+WFH WS LQLFL+IGVLFG+
Sbjct: 361 AVYQKQLKLSSLGRGRHSTGEIVNYIAIDAYRMGEFPWWFHTMWSFILQLFLSIGVLFGI 420
Query: 416 VGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWE 475
VGLGAL GLV LICGLLNVPFAKI+Q+CQ +FM+AQD+RLRSTSEILN+MK+IKLQSWE
Sbjct: 421 VGLGALTGLVPLLICGLLNVPFAKIIQRCQFQFMMAQDQRLRSTSEILNSMKVIKLQSWE 480
Query: 476 EKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTI 535
EKFK+LIES R+ EFKWL+EA +K Y TV+YW+SP+II SVIFLGC + SAPL+ASTI
Sbjct: 481 EKFKNLIESLRDIEFKWLAEAHYKKCYCTVLYWLSPSIIPSVIFLGCVVFRSAPLDASTI 540
Query: 536 FTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSV 595
FTVLA LR M EPVR IPEALS +IQ+KVSFDR+NAFLLD E+ ++++R++ + S SV
Sbjct: 541 FTVLAALRCMSEPVRTIPEALSALIQIKVSFDRLNAFLLDDEVKSEEIRKVVVPNSHYSV 600
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655
+ FSWDP+ I TLR VN+++KW QK+AVCG VGAGKSSLLYAILGEIPK+SGTV+
Sbjct: 601 IVNGCGFSWDPKSTILTLRDVNMEVKWGQKVAVCGPVGAGKSSLLYAILGEIPKVSGTVD 660
Query: 656 LYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
++GSIAYVSQTSWIQSG+IRDNILYG+PMDK +Y+KAIKACALDKDIN+FDHGDLTEIGQ
Sbjct: 661 VFGSIAYVSQTSWIQSGTIRDNILYGRPMDKTKYEKAIKACALDKDINSFDHGDLTEIGQ 720
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
RGLN+SGGQKQRIQLARAVYNDA+IYL DDPFSAVDAHTAA LFN+C+M+AL +KTVILV
Sbjct: 721 RGLNMSGGQKQRIQLARAVYNDANIYLLDDPFSAVDAHTAAVLFNDCIMSALAQKTVILV 780
Query: 776 THQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQG 835
THQVEFLS VD+ILV+EGGQITQSG+Y+EL AGTAFEQLVNAH++A T + + Q
Sbjct: 781 THQVEFLSAVDKILVMEGGQITQSGSYEELFAAGTAFEQLVNAHKNATTVMNLSNKEIQE 840
Query: 836 GAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGL--TQLTEDEEMEIGDVGWKPFMDYL 893
K+++ P KES EGEIS+KGL QLTE+EE EIGDVGWKPF+DYL
Sbjct: 841 EPHKLDQS------------PTKESGEGEISMKGLQGVQLTEEEEREIGDVGWKPFLDYL 888
Query: 894 NVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVY 953
VSKG LL L ++ +SGF+ LQAA+TYWLA AI++PKI++G+LIGVYAG+ST S F+Y
Sbjct: 889 LVSKGSFLLFLCIITKSGFIALQAASTYWLALAIEMPKISNGMLIGVYAGLSTLSTGFIY 948
Query: 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSI 1013
RSFF A LGLKASKAFF+GFTNSIFKAPMLFFDSTPVGRILTR SSDLS+LDFDIPFSI
Sbjct: 949 LRSFFGARLGLKASKAFFAGFTNSIFKAPMLFFDSTPVGRILTRASSDLSVLDFDIPFSI 1008
Query: 1014 VFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPV 1073
+FV ASG ELL+IIG+ +TW VL+VAIFA+VAV +VQ YY+A+ARELIRINGTTKAPV
Sbjct: 1009 IFVVASGLELLSIIGVTASITWPVLIVAIFAIVAVYYVQGYYLASARELIRINGTTKAPV 1068
Query: 1074 MNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL 1133
M+Y AETS GVVTIRAFNMVDRFFQNYL+L++ DA LFF++N +EWL+LR+E LQNLTL
Sbjct: 1069 MSYAAETSLGVVTIRAFNMVDRFFQNYLELIETDAKLFFYSNAAIEWLVLRIEILQNLTL 1128
Query: 1134 FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI 1193
TAAL LVL+P+GYVAPGLVGLSLSYA LTGTQVF SRWYC L+NY++SVERIKQFMHI
Sbjct: 1129 VTAALLLVLLPKGYVAPGLVGLSLSYALALTGTQVFFSRWYCNLSNYVVSVERIKQFMHI 1188
Query: 1194 PPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTG 1253
P EPPAIVE+KRPP+SWP KGRI+L+ LKI+YRPNAPLVLKGITCTF EGTRVG+VGRTG
Sbjct: 1189 PSEPPAIVEEKRPPTSWPSKGRIDLQYLKIKYRPNAPLVLKGITCTFKEGTRVGIVGRTG 1248
Query: 1254 SGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP 1313
SGKTTLISALFRLVEP G I IDG+DICS+GLKDLR+KLSIIPQEPTLF+GS+RTNLDP
Sbjct: 1249 SGKTTLISALFRLVEPESGKIFIDGLDICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDP 1308
Query: 1314 LGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373
LGLYSDDEIW+ALEKCQLK TISSLPN LDS VSDEGENWSAGQRQLFCLGRVLLKRNRI
Sbjct: 1309 LGLYSDDEIWEALEKCQLKATISSLPNLLDSYVSDEGENWSAGQRQLFCLGRVLLKRNRI 1368
Query: 1374 LVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDE 1433
LVLDEA ASIDSATDAILQRIIRQEFSNCTVITVAHRVPT+IDSDMVMVLSYGKL+EYDE
Sbjct: 1369 LVLDEATASIDSATDAILQRIIRQEFSNCTVITVAHRVPTLIDSDMVMVLSYGKLVEYDE 1428
Query: 1434 PSKLMETNSSFSKLVAEYWSSCRRNSYQNLNNFQ 1467
PS LMETNSSFSKLVAEYWSSC RNS Q+ N ++
Sbjct: 1429 PSNLMETNSSFSKLVAEYWSSCWRNSSQSFNYYK 1462
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482524|ref|XP_002276193.2| PREDICTED: ABC transporter C family member 8-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2132 bits (5524), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1066/1466 (72%), Positives = 1233/1466 (84%), Gaps = 11/1466 (0%)
Query: 1 MAFLGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRI 60
MA L LGG SW C E DLGSFCIQ TI+DV+NL+F VF + L++G RK+ G
Sbjct: 1 MASLEISLGGFSWVCGEELDLGSFCIQRTILDVLNLLFLSVFSVILVIGYIRKHEISGCS 60
Query: 61 RRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVK 118
RR+ VS VS CCA+ GIAY+ W+L+ +N S + WLV VRGL W+SLA+SLLV+
Sbjct: 61 RRDWVSGGVSICCALTGIAYVSAGFWDLVVRNGGSQPLGWLVYFVRGLTWISLAVSLLVR 120
Query: 119 RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFT 178
SKW R+L LWW++F LV LNIEIL +T+ I + I+P VN LL+F AFRN H
Sbjct: 121 SSKWSRILSFLWWLTFFSLVSTLNIEILVKTHNIKIFDIVPWLVNSLLIFCAFRNIFHSV 180
Query: 179 SPNRE-DKSLSEPLLAEK--NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLV 235
S + DKS SEPLLA+K +TE+GK + KLTFSWINP+L LG SKPL LED+P L
Sbjct: 181 SEDTTPDKSESEPLLAKKPVRRTEVGKISFITKLTFSWINPILCLGNSKPLVLEDVPPLA 240
Query: 236 PEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVV 295
EDEA AYQKF+ AW+ L RE +S++ NLV + + VYLKE IF+ +CALLRTI+VVV
Sbjct: 241 SEDEAELAYQKFSQAWECLQRERSSSSTDNLVFRALAIVYLKEMIFVGLCALLRTISVVV 300
Query: 296 GPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355
PLLLYAFV YS R EEN QEG+ ++GCLII+KVVES +QRH F +RR GMRMRSALMV
Sbjct: 301 SPLLLYAFVKYSTRDEENWQEGVFLMGCLIISKVVESVSQRHWFLNARRFGMRMRSALMV 360
Query: 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGV 415
AVYQKQLKLSSLGR++HS+G+IVNYIAVDAY GEFP+WFH WS LQLFL+IGVLFGV
Sbjct: 361 AVYQKQLKLSSLGRRRHSSGQIVNYIAVDAYTTGEFPWWFHSAWSYILQLFLSIGVLFGV 420
Query: 416 VGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWE 475
VG+GAL GL L+CGLLNVPFAKILQKCQS+ M+A+D+RLRSTSEILN+MK+IKLQSWE
Sbjct: 421 VGVGALSGLAPLLVCGLLNVPFAKILQKCQSQLMMARDQRLRSTSEILNSMKVIKLQSWE 480
Query: 476 EKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTI 535
+KFK+ IES R+ EFKWL+EAQ +K Y TV+YWMSPTI+SSV FLGCAL GSAPLNASTI
Sbjct: 481 DKFKNFIESLRDVEFKWLAEAQYKKCYNTVLYWMSPTIVSSVTFLGCALFGSAPLNASTI 540
Query: 536 FTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSV 595
FT++A LR MGEPVRMIPEA+S+MIQ K+SF+R+NAF LD EL ++++RR++L SD SV
Sbjct: 541 FTIVAALRCMGEPVRMIPEAISVMIQAKISFERLNAFFLDDELKSEEMRRVTLPNSDHSV 600
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655
I GNFSW+PE A+ TLR +NL +K Q +AVCG VGAGKSS L+AILGEIPKISG+V+
Sbjct: 601 VINGGNFSWEPESAVLTLRDINLGVKRGQILAVCGPVGAGKSSFLFAILGEIPKISGSVD 660
Query: 656 LYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
++GSIAYVSQTSWIQSG+IRDNIL GKPMD +Y+KAIKACALDKDIN+FDHGD TEIGQ
Sbjct: 661 VFGSIAYVSQTSWIQSGTIRDNILCGKPMDTTKYEKAIKACALDKDINSFDHGDETEIGQ 720
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
RGLN+SGGQKQRIQLARA+YNDA+IYL DDPFSAVDAHTAA LFN+CVMAAL KTV+LV
Sbjct: 721 RGLNMSGGQKQRIQLARALYNDAEIYLLDDPFSAVDAHTAAILFNDCVMAALRHKTVMLV 780
Query: 776 THQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQG 835
THQVEFLS+V++ILVLEGG+ITQSG+Y+ELL GTAFEQLVNAH++AIT L +N G
Sbjct: 781 THQVEFLSQVEKILVLEGGRITQSGSYEELLTTGTAFEQLVNAHKNAITVLDLSNNEG-- 838
Query: 836 GAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLT--QLTEDEEMEIGDVGWKPFMDYL 893
E+ +K PE +G P KE SEGEIS+KGL QLTE+E MEIGDVGWK F DYL
Sbjct: 839 --EETQKLDHILPEVSHGSCPTKERSEGEISMKGLRGGQLTEEEGMEIGDVGWKAFWDYL 896
Query: 894 NVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVY 953
VSKG L+ G++AQ GFV LQAA+TYWLA I+IPKI++G+LIGVYAG+ST SAVFVY
Sbjct: 897 LVSKGALLMFSGMIAQCGFVALQAASTYWLALGIEIPKISNGMLIGVYAGISTLSAVFVY 956
Query: 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSI 1013
RSF A LGLKASKAFF+GFT+SIF APM FFDSTPVGRILTR SSDL++LD +IPFSI
Sbjct: 957 LRSFLIARLGLKASKAFFAGFTSSIFNAPMHFFDSTPVGRILTRASSDLTVLDSNIPFSI 1016
Query: 1014 VFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPV 1073
+FV ++G ++L IGIM VTW VL+VAIFAMVA ++VQ YY+A+ARELIRINGTTKAPV
Sbjct: 1017 IFVLSAGIDILTTIGIMASVTWPVLIVAIFAMVAAKYVQGYYLASARELIRINGTTKAPV 1076
Query: 1074 MNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL 1133
MNY AE+S GVVTIRAFNMVDRFFQNYLKL+D DA LFF++N MEWL+LR+EALQNLTL
Sbjct: 1077 MNYAAESSLGVVTIRAFNMVDRFFQNYLKLIDTDAKLFFYSNAAMEWLVLRIEALQNLTL 1136
Query: 1134 FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI 1193
TAAL LVL+P+GYVAPGLVGLSLSYA LTGTQV LSRWYC L+NY++SVERIKQFMHI
Sbjct: 1137 VTAALLLVLLPKGYVAPGLVGLSLSYALALTGTQVMLSRWYCNLSNYMVSVERIKQFMHI 1196
Query: 1194 PPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTG 1253
P EPPAIV+ KRPPSSWP KGRIEL+ LKI+YRPN+PLVLKGITC F EGTRVGVVGRTG
Sbjct: 1197 PSEPPAIVDGKRPPSSWPSKGRIELQNLKIKYRPNSPLVLKGITCIFKEGTRVGVVGRTG 1256
Query: 1254 SGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP 1313
SGKTTLISALFRLVEP G+IL+DG+DICS+GLKDLR+KLSIIPQEPTLF+GS+RTNLDP
Sbjct: 1257 SGKTTLISALFRLVEPESGTILVDGLDICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDP 1316
Query: 1314 LGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373
LGLYS++EIWKALEKCQLK TISSLPN LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI
Sbjct: 1317 LGLYSENEIWKALEKCQLKATISSLPNLLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1376
Query: 1374 LVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDE 1433
LVLDEA ASIDSATDAILQRIIRQEFSNCTVITVAHRVPTV+DSDMVMVLSYGKL+EYD+
Sbjct: 1377 LVLDEATASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVMDSDMVMVLSYGKLVEYDK 1436
Query: 1434 PSKLMETNSSFSKLVAEYWSSCRRNS 1459
PS LM+TNSSFSKLV EYWSS RRNS
Sbjct: 1437 PSNLMDTNSSFSKLVGEYWSSSRRNS 1462
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528857|ref|XP_003533014.1| PREDICTED: ABC transporter C family member 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2058 bits (5332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1018/1457 (69%), Positives = 1184/1457 (81%), Gaps = 14/1457 (0%)
Query: 11 LSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRRECVSIVVS 70
SW C GEF L SF Q IID+IN+ F VFY SLL +K+ R+ + +V S
Sbjct: 15 FSWICLGEFSLTSFSTQRCIIDIINIFFMGVFYASLLSNLIKKSPASSSYRKGWIHVVAS 74
Query: 71 ACCAVVGIAYLGYCLWNLIAKNDS---SMSWLVSTVRGLIWVSLAISLLVKRSKWIRMLI 127
CC ++ IAY LWNLIAK + ++ LV +RGL+W+SLA+SL V+RS+WI++
Sbjct: 75 VCCTLLSIAYFIDGLWNLIAKKTTGFNQLNLLVCIIRGLVWISLAVSLFVQRSQWIKISC 134
Query: 128 TLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPNREDKSL 187
++WWM+ LV A N+EIL + +T + Y+ PV++L +F AF+N F D SL
Sbjct: 135 SIWWMTSCTLVSAFNVEILVKEHTFEIFYMAIWPVHILTIFCAFQNHGFFVPQETPDASL 194
Query: 188 SEPLLAEKN---QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAY 244
EPLL K+ QTELG A + +FSW+N LLSLGYSKPLALEDIPSL ED+A FAY
Sbjct: 195 CEPLLVHKDMHKQTELGHASFCSRFSFSWMNALLSLGYSKPLALEDIPSLASEDKADFAY 254
Query: 245 QKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFV 304
QKF +AWDSL+RE NN+ NLV I VYL ENIFIAICA LRTI VV PLL+YAFV
Sbjct: 255 QKFVHAWDSLLRERGRNNSRNLVLWSIARVYLNENIFIAICAFLRTICAVVSPLLVYAFV 314
Query: 305 NYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKL 364
NYS+ EE L++G++IVGCLI KVVES +QRH F SRR GM+MRSALM AVYQKQLKL
Sbjct: 315 NYSSSIEEELKQGIAIVGCLIFAKVVESVSQRHWSFNSRRLGMKMRSALMAAVYQKQLKL 374
Query: 365 SSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGL 424
S+LGR++HSTGEIVNYIAVDAYRMGEFP+WFH ALQ+FLA+GVLFGVVGLGALPGL
Sbjct: 375 SALGRRRHSTGEIVNYIAVDAYRMGEFPWWFHTLMFSALQVFLALGVLFGVVGLGALPGL 434
Query: 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES 484
V +ICG LNVPFAKILQKC+SEFMIAQDERLRSTSEIL++MKIIKLQSWE+ FK +ES
Sbjct: 435 VPLIICGFLNVPFAKILQKCRSEFMIAQDERLRSTSEILSSMKIIKLQSWEDNFKKFVES 494
Query: 485 RREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRS 544
R KEFK L+EAQ +AYGT IYWMSP IISSVIF+GCAL S+PLNA+TIF+VLA LRS
Sbjct: 495 LRAKEFKCLAEAQFMRAYGTFIYWMSPAIISSVIFVGCALFQSSPLNAATIFSVLAALRS 554
Query: 545 MGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKS-DRSVKIQEGNFS 603
MGEPV +IPEALS++IQVKVSFDRIN FLLD E+ +DD+RR S Q S +SV+I GNFS
Sbjct: 555 MGEPVTLIPEALSVLIQVKVSFDRINTFLLDDEIKSDDIRRTSKQDSCSKSVEILAGNFS 614
Query: 604 WDPELAIP-TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAY 662
WD + ++P TLR VN +IKW Q +AVCG VGAGK+SLLYAILGEIPKISG V++ G++AY
Sbjct: 615 WDQQQSVPPTLRKVNFEIKWGQTVAVCGPVGAGKTSLLYAILGEIPKISGIVSVCGTLAY 674
Query: 663 VSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722
VSQT WIQSG+IRDNILYGKPMD+ RY IK CALDKDI+ F HGDLTEIGQRG+N+SG
Sbjct: 675 VSQTPWIQSGTIRDNILYGKPMDETRYGYTIKVCALDKDIDGFRHGDLTEIGQRGINMSG 734
Query: 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL 782
GQKQRIQLARAVYNDADIYL DDPFSAVDAHTA+ LFN+CV AL +KTVILVTHQVEFL
Sbjct: 735 GQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASILFNDCVRVALRRKTVILVTHQVEFL 794
Query: 783 SEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEK 842
S+VD+ILV+E G+ITQ GNY++LL AGTAFEQL++AHR+AITG+ +VE
Sbjct: 795 SKVDKILVMERGKITQLGNYEDLLTAGTAFEQLLSAHREAITGI----EKSSAYKREVEN 850
Query: 843 GRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLL 902
+ E+ + K S+G+IS K QLT++EE E GDVGWKPF DY+ KG LL
Sbjct: 851 LVAVQLEDSHVCNLTKGGSDGDISTK--IQLTQEEEKESGDVGWKPFCDYIFFPKGSLLL 908
Query: 903 CLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHL 962
CL +LAQ FVG QAA+TYWLA AI++ K+TS ILIGVY+ +S S VFVY RS+FAAHL
Sbjct: 909 CLSILAQFAFVGFQAASTYWLALAIEMQKVTSSILIGVYSVISFLSIVFVYLRSYFAAHL 968
Query: 963 GLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTE 1022
GLKASKAFFS FT++IF APMLFFDSTP+GRILTR SSDLSILDFDIPF+ +FV + E
Sbjct: 969 GLKASKAFFSAFTDAIFNAPMLFFDSTPIGRILTRASSDLSILDFDIPFTTIFVTSEIAE 1028
Query: 1023 LLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQ 1082
LL +IGIM VTWQVL+VA+ AMVA ++VQ YY A+ARE+IRINGTTKAP+MN+TAETS
Sbjct: 1029 LLTMIGIMVSVTWQVLIVAVLAMVASKYVQGYYQASAREIIRINGTTKAPLMNFTAETSL 1088
Query: 1083 GVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVL 1142
G VTIRAFNM DRFF+NYL LVD DA++FFH+N +EWLILR+E LQNLTLFTAAL LVL
Sbjct: 1089 GAVTIRAFNMTDRFFKNYLNLVDTDATMFFHSNAAIEWLILRIELLQNLTLFTAALLLVL 1148
Query: 1143 IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202
+P+GYVAPGLVGLSLSYAF+LT T V+L+R +C L+NY+ISVERIKQF+HIP EP AIVE
Sbjct: 1149 LPKGYVAPGLVGLSLSYAFSLTATVVYLTRMFCNLSNYVISVERIKQFIHIPAEPSAIVE 1208
Query: 1203 DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISA 1262
D RPP SWP KGRI+L+ L+IRYRPNAPLVLKGI+C F EG+RVGVVGRTGSGKTTLISA
Sbjct: 1209 DNRPPPSWPSKGRIDLQSLEIRYRPNAPLVLKGISCRFEEGSRVGVVGRTGSGKTTLISA 1268
Query: 1263 LFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEI 1322
LFRLVEP G ILIDG++ICS+GLKDLR KLSIIPQEPTLF+GS+R NLDPL LYSDDEI
Sbjct: 1269 LFRLVEPTRGDILIDGINICSIGLKDLRTKLSIIPQEPTLFKGSIRKNLDPLCLYSDDEI 1328
Query: 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
WKALEKCQLK TISSLPN LD+SVSDEGENWS GQRQL CLGRVLLKRNRILVLDEA AS
Sbjct: 1329 WKALEKCQLKATISSLPNLLDTSVSDEGENWSVGQRQLICLGRVLLKRNRILVLDEATAS 1388
Query: 1383 IDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNS 1442
IDSATD ILQ++IRQEFS CTVITVAHRVPTVIDSDMVMVLSYGK++EYD+PSKLM TNS
Sbjct: 1389 IDSATDVILQQVIRQEFSECTVITVAHRVPTVIDSDMVMVLSYGKVVEYDKPSKLMGTNS 1448
Query: 1443 SFSKLVAEYWSSCRRNS 1459
SFS LVAEYWS+C RNS
Sbjct: 1449 SFSMLVAEYWSNCNRNS 1465
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357515353|ref|XP_003627965.1| ABC transporter C family member [Medicago truncatula] gi|355521987|gb|AET02441.1| ABC transporter C family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2047 bits (5304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1007/1467 (68%), Positives = 1195/1467 (81%), Gaps = 21/1467 (1%)
Query: 1 MAFLGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRI 60
MA +G +SWTC +FDL S C Q +++D IN++F CV+Y SLL+ RK+
Sbjct: 1 MANFWISIGEISWTCLKKFDLNSLCSQRSLVDTINILFLCVYYTSLLITLIRKSCTNESQ 60
Query: 61 RRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVK 118
R+ ++VS CCA++ IA+ + LWNLIAK D+S ++ +V ++G IW+S A+SL+V+
Sbjct: 61 RKCWNFLIVSICCALISIAFFSFGLWNLIAKTDNSEELNLVVCIIKGFIWISFAVSLIVQ 120
Query: 119 RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFT 178
R K +R+L ++WW+S +LV +LNIEIL + + I I+ V LLL+ AF+N H
Sbjct: 121 RIKLVRILNSIWWLSSCILVSSLNIEILLKNHVIETFDIVQWLVYFLLLYCAFKNLGHIR 180
Query: 179 SPNREDKSLSEPLLAEKN---QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLV 235
NR + LSEPLLA+KN QTELG A L KL FSW+N LLSLGYSKPLALEDIPSLV
Sbjct: 181 D-NRVQECLSEPLLAQKNETAQTELGHATFLSKLIFSWVNSLLSLGYSKPLALEDIPSLV 239
Query: 236 PEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVV 295
EDEA+ AY+KF +AW+SLVRE NN +LV I YLKENI IA AL+RTIAVVV
Sbjct: 240 SEDEANMAYKKFVHAWESLVRERTKNNTKSLVLWSIVRSYLKENILIAFYALIRTIAVVV 299
Query: 296 GPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355
PL+LYAFVNYSNR EE+L++GLSIVG L++TKV ES +QRH FF SRRSGM+MRSALMV
Sbjct: 300 SPLILYAFVNYSNRTEEDLKQGLSIVGFLVVTKVFESVSQRHWFFNSRRSGMKMRSALMV 359
Query: 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGV 415
AVYQKQLKLSS RK+HS GEIVNYIAVD+YRMGEFP+WFH+TW+ ALQLFL+ VLF V
Sbjct: 360 AVYQKQLKLSSSARKRHSVGEIVNYIAVDSYRMGEFPWWFHITWTSALQLFLSTSVLFIV 419
Query: 416 VGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWE 475
VG+GALPGLV LICGL N+PFA+ILQ CQS+FMIAQDERLR+TSEILN+MKIIKLQSWE
Sbjct: 420 VGIGALPGLVPLLICGLFNIPFARILQNCQSQFMIAQDERLRTTSEILNSMKIIKLQSWE 479
Query: 476 EKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTI 535
EKFK+L+ES R+KEF WLS+AQ+ KA G+ +YW+SP ++S+V+FL C++T SAPLNA TI
Sbjct: 480 EKFKNLVESLRDKEFVWLSKAQILKASGSFLYWISPAMVSAVVFLACSVTKSAPLNAETI 539
Query: 536 FTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSV 595
FTVLATLR+MGEPVR IPEALS MIQ KVSFDR+N F LD +LNN++ + Q S ++
Sbjct: 540 FTVLATLRNMGEPVRTIPEALSNMIQAKVSFDRLNNFFLDEDLNNNESEKNLNQCSVNAL 599
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655
+IQ+GNF WD E P L+ VNL+IKW QKIAVCG VG+GKSSLLYAILGEIPKISGTV
Sbjct: 600 QIQDGNFIWDHESMSPALKDVNLEIKWRQKIAVCGPVGSGKSSLLYAILGEIPKISGTVY 659
Query: 656 LYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
+ G++AYVSQ+SWIQSG+++DNIL+GK MDK RY+KAIKACALDKDI++F HGDLTEIG+
Sbjct: 660 VGGTLAYVSQSSWIQSGTVQDNILFGKEMDKTRYEKAIKACALDKDIDDFSHGDLTEIGE 719
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
RG+N+SGGQKQRIQLARAVYNDADIYL DDPFSAVDAHTAA LFN+CVM AL KTVILV
Sbjct: 720 RGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALRDKTVILV 779
Query: 776 THQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQG 835
THQVEFLSEVD ILV+E G++ QSG+Y+ LL +GTAFE LV+AH+ I L
Sbjct: 780 THQVEFLSEVDTILVMEDGKVIQSGSYENLLKSGTAFELLVSAHKVTINDLNQNSEV--- 836
Query: 836 GAEKVEKGRTARPEEPNGIYPRKESSEGEI-SVKGL--TQLTEDEEMEIGDVGWKPFMDY 892
+ P++ +G Y K SEGEI S++G QLT++EE IG+VGWKP DY
Sbjct: 837 ---------LSNPQDSHGFYLTKNQSEGEISSIQGSIGAQLTQEEEKVIGNVGWKPLWDY 887
Query: 893 LNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFV 952
+N S G + CL +L Q F+ LQ ++ +WLA AI+IPK+T LIGVYA +S +S FV
Sbjct: 888 INYSNGTLMSCLVILGQCCFLALQTSSNFWLATAIEIPKVTDTTLIGVYALLSISSTSFV 947
Query: 953 YFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFS 1012
Y RS+FAA LGLKAS AFFS FT SIF APMLFFDSTPVGRILTR SSDLSILDFDIP+S
Sbjct: 948 YVRSYFAALLGLKASTAFFSSFTTSIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYS 1007
Query: 1013 IVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAP 1072
+ VA E+L +I ++ VTWQVL+VA+ AMVA+ F+Q+YY ATARELIRINGTTKAP
Sbjct: 1008 LTCVAIVAIEVLVMIFVIASVTWQVLIVAVPAMVALIFIQKYYQATARELIRINGTTKAP 1067
Query: 1073 VMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLT 1132
VMN+ AETS GVVT+RAFNMVDRFF+NYLKLVD DASLFFH+N MEWL+LR+EAL NLT
Sbjct: 1068 VMNFAAETSLGVVTVRAFNMVDRFFKNYLKLVDTDASLFFHSNVAMEWLVLRIEALLNLT 1127
Query: 1133 LFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH 1192
+ TAAL L+L+P+ Y++PG VGLSLSYA TL G Q+F +RW+ L+NYIISVERIKQF+H
Sbjct: 1128 VITAALLLILLPQRYLSPGRVGLSLSYALTLNGAQIFWTRWFSNLSNYIISVERIKQFIH 1187
Query: 1193 IPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRT 1252
IP EPPAIV++ RPPSSWP KG+I+L+ L++RYRPNAPLVLKGITCTF G+RVGVVGRT
Sbjct: 1188 IPAEPPAIVDNNRPPSSWPSKGKIDLQGLEVRYRPNAPLVLKGITCTFKGGSRVGVVGRT 1247
Query: 1253 GSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD 1312
GSGK+TLISALFRLVEP+ G ILIDG++ICSMGLKDLR+KLSIIPQEPTLF+GS+RTNLD
Sbjct: 1248 GSGKSTLISALFRLVEPSRGDILIDGINICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLD 1307
Query: 1313 PLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372
PLGLYSDDEIWKA+EKCQLK TIS LP+ LDSSVSDEG NWS GQRQLFCLGRVLLKRNR
Sbjct: 1308 PLGLYSDDEIWKAVEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNR 1367
Query: 1373 ILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYD 1432
ILVLDEA ASIDSATDAILQRIIRQEF CTVITVAHRVPTVIDSDMVMVLSYGKL+EYD
Sbjct: 1368 ILVLDEATASIDSATDAILQRIIRQEFEECTVITVAHRVPTVIDSDMVMVLSYGKLVEYD 1427
Query: 1433 EPSKLMETNSSFSKLVAEYWSSCRRNS 1459
EPSKLM+TNSSFSKLVAEYWSSCR+NS
Sbjct: 1428 EPSKLMDTNSSFSKLVAEYWSSCRKNS 1454
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522202|ref|XP_003529736.1| PREDICTED: ABC transporter C family member 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2046 bits (5300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1012/1464 (69%), Positives = 1195/1464 (81%), Gaps = 24/1464 (1%)
Query: 11 LSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRRECVSIVVS 70
SWTC +F+ SFC Q T ID INL+F C FY S+++ R+ R + +V S
Sbjct: 495 FSWTCLKDFEFTSFCSQRTTIDTINLLFVCFFYTSMIISIIRRCSISCSFRTKWTFLVAS 554
Query: 71 ACCAVVGIAYLGYCLWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVKRSKWIRMLIT 128
CCA++ IA+ LW LI K D++ +SW+ VRG +W SLA+SLLV+R KWI++L
Sbjct: 555 ICCAIISIAFYSIGLWILIVKTDNTKQLSWVACVVRGFVWTSLAVSLLVQREKWIKILNC 614
Query: 129 LWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPNREDKSLS 188
WW +LV +L IEIL R + I + I+ + LLLF AF+N ++ S + + SLS
Sbjct: 615 AWWTCSCVLVSSLIIEILLRKHAIEIFDIVQWLTHFLLLFCAFQNLCYYVSQSLPE-SLS 673
Query: 189 EPLLAEK---NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQ 245
EPLLA++ QTELG + L KLTFSW+N LL LGYSKPLALEDIPSL+ EDEA FAYQ
Sbjct: 674 EPLLAQEVDTKQTELGHSTFLSKLTFSWVNSLLRLGYSKPLALEDIPSLLSEDEAEFAYQ 733
Query: 246 KFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVN 305
F + W+SLVRE++ +N NLV + +LKENI IA ALLRTIAV V PL+LYAFVN
Sbjct: 734 NFMHTWESLVRESSKDNTKNLVLWSVVRTHLKENILIAFYALLRTIAVTVSPLILYAFVN 793
Query: 306 YSNR---GEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQL 362
YSN + NL+EGLSIVG LI+++VV+S +QRH FF SRRSG+++RSALMVAVY+KQL
Sbjct: 794 YSNSRDAKQTNLKEGLSIVGFLILSRVVDSVSQRHWFFDSRRSGLKIRSALMVAVYKKQL 853
Query: 363 KLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALP 422
KLSS R++HSTGEIVNYIAVD YRMGEFP+WFH++W+ A+QL L++GVLFGVVG+GALP
Sbjct: 854 KLSSSARRRHSTGEIVNYIAVDTYRMGEFPWWFHISWTSAVQLVLSVGVLFGVVGVGALP 913
Query: 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI 482
GLV +ICGL+NVPFAKILQ C ++FMI+QDERLRSTSEILN+MKIIKLQSWE+KFK+L+
Sbjct: 914 GLVPLVICGLINVPFAKILQHCMAQFMISQDERLRSTSEILNSMKIIKLQSWEDKFKNLV 973
Query: 483 ESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATL 542
E+ R KEF WLS++Q+ K+YGT +YWMSPTI+S+V+FLGCAL SAPLNA TIFTV ATL
Sbjct: 974 ENLRAKEFIWLSKSQMMKSYGTFLYWMSPTIVSAVVFLGCALFNSAPLNAGTIFTVFATL 1033
Query: 543 RSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL-QKSDRSVKIQEGN 601
R++ EPVRMIPEALS+MIQVKVSFDR+N LLD EL++ + R ++ Q S +V+IQ GN
Sbjct: 1034 RNLSEPVRMIPEALSMMIQVKVSFDRLNTVLLDEELDSSNANRRNINQSSVNAVEIQAGN 1093
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA 661
F WD E PTLR VNL I+ QKIAVCG VGAGKSSLL+A+LGE PKISGTVN+ G++A
Sbjct: 1094 FIWDHESVFPTLRDVNLQIEQGQKIAVCGPVGAGKSSLLFAVLGEFPKISGTVNVSGTVA 1153
Query: 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721
YVSQTSWIQSG++RDNIL+GKPMDK RYD AIK CALDKDIN+F HGDLTEIGQRG+N+S
Sbjct: 1154 YVSQTSWIQSGTVRDNILFGKPMDKTRYDDAIKVCALDKDINDFSHGDLTEIGQRGINMS 1213
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781
GGQKQRIQLARAVYNDADIYL DDPFSAVDAHTAA LFN+CVM AL +KTVILVTHQVEF
Sbjct: 1214 GGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMMALREKTVILVTHQVEF 1273
Query: 782 LSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVE 841
LS+VD ILV+EGG++TQ+GNY LL +GTAFEQLV+AH++AI+ L E+
Sbjct: 1274 LSQVDTILVMEGGKVTQAGNYVNLLTSGTAFEQLVSAHKEAISEL-----------EQNN 1322
Query: 842 KGRTARPEEPNGIYPRKESSEGEISVKGL--TQLTEDEEMEIGDVGWKPFMDYLNVSKGM 899
+ +T EE G Y K SEGEIS KG QLT++EE EIGDVGWK DY++ S+
Sbjct: 1323 ENKT-HTEESQGFYLTKNQSEGEISYKGQLGVQLTQEEEKEIGDVGWKTIWDYISFSRCS 1381
Query: 900 SLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFA 959
+LC +L Q FV LQAA+T+WL AI+IPK++S LIGVY+ +S VF + R+
Sbjct: 1382 MMLCWIILGQFAFVVLQAASTFWLVQAIEIPKLSSVTLIGVYSLISFGGTVFAFLRTSIG 1441
Query: 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAAS 1019
AHLGLKAS AFFS FT SIF APMLFFDSTPVGRILTR SSDL+ILDFDIPFSI FVA+
Sbjct: 1442 AHLGLKASTAFFSSFTTSIFNAPMLFFDSTPVGRILTRASSDLTILDFDIPFSITFVASV 1501
Query: 1020 GTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAE 1079
E+L IIGIM +VTWQVL+VA+ AMVA ++VQ YY A+ARELIRINGTTKAPVMN+ AE
Sbjct: 1502 PIEILMIIGIMVYVTWQVLIVAVPAMVASKYVQGYYQASARELIRINGTTKAPVMNFAAE 1561
Query: 1080 TSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF 1139
TS G+VT+RAFNM DRFF+NYLKLVD DA+LFF++N MEWL+LR+E LQNLT+ TAAL
Sbjct: 1562 TSLGLVTVRAFNMADRFFKNYLKLVDTDAALFFYSNAAMEWLVLRIETLQNLTVITAALL 1621
Query: 1140 LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199
LVL+P+GYV+PGLVGLSLSY FTLTGTQ+FL+RWYC L NYIISVERIKQF+ +P EPPA
Sbjct: 1622 LVLVPQGYVSPGLVGLSLSYTFTLTGTQIFLTRWYCNLLNYIISVERIKQFIQLPEEPPA 1681
Query: 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259
IVED RPPSSWP KGRI+L+ L+IRYRPNAPLVLKGITCTF EG+RVGVVGRTGSGK+TL
Sbjct: 1682 IVEDNRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTL 1741
Query: 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSD 1319
ISALFRLVEPA G ILIDG++ICS+GLKDL++KLSIIPQEPTLF+GS+RTNLDPLGLYSD
Sbjct: 1742 ISALFRLVEPASGDILIDGINICSIGLKDLKIKLSIIPQEPTLFKGSIRTNLDPLGLYSD 1801
Query: 1320 DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEA 1379
D++WKALEKCQLK TIS LPN LDS VSDEG NWS GQRQLFCLGRVLLKRNRILVLDEA
Sbjct: 1802 DDLWKALEKCQLKETISRLPNLLDSLVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEA 1861
Query: 1380 NASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME 1439
ASIDSATDAILQ+IIRQEF+ CTVITVAHRVPTVIDSDMVMVLSYGKL+EYDEPSKLM+
Sbjct: 1862 TASIDSATDAILQQIIRQEFAKCTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMD 1921
Query: 1440 TNSSFSKLVAEYWSSCRRNSYQNL 1463
TNSSFSKLVAEYWSSCR+NS Q L
Sbjct: 1922 TNSSFSKLVAEYWSSCRKNSPQTL 1945
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526035|ref|XP_003531625.1| PREDICTED: ABC transporter C family member 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2040 bits (5286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1023/1478 (69%), Positives = 1198/1478 (81%), Gaps = 25/1478 (1%)
Query: 1 MAFLGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRI 60
MA+ G ++ S C +FD SFC Q T ID INL+F CVFY S+++ R+N G
Sbjct: 1 MAYFGNIIDDFSGICLKDFDFTSFCSQRTTIDAINLLFICVFYTSMIISLMRRNSQCGSP 60
Query: 61 RRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVK 118
+ I+VS CCA++ I + L NLIAK D+S ++WL VRG IW SLA+SLLV+
Sbjct: 61 SKSRFFILVSICCAIISIVFYSIGLRNLIAKTDNSKQLNWLACIVRGFIWTSLAVSLLVQ 120
Query: 119 RSKWIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFT 178
R KWI++L ++WW +L LNIEIL + I + I+ ++ LLLF AF+N +F
Sbjct: 121 RLKWIKILNSVWWACSCVLASVLNIEILFKKQAIEIFDIIQWFLHFLLLFCAFQNLGYFV 180
Query: 179 SPNREDKSLSEPLLAEK---NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLV 235
S + +SLSEPLL ++ QT LG+A L KLTFSWIN LLSLGYSK L LEDIPSL+
Sbjct: 181 SQSVP-QSLSEPLLDQEVDTKQTGLGRANFLSKLTFSWINSLLSLGYSKSLVLEDIPSLL 239
Query: 236 PEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVV 295
EDEA+ YQ F +AW+SLVRE + N NLV + +LKENI IA ALLRT AV V
Sbjct: 240 SEDEANLGYQNFMHAWESLVRERSKTNTKNLVLWSVVRTHLKENILIAFWALLRTFAVSV 299
Query: 296 GPLLLYAFVNYSNRGEE---NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSA 352
PL+LYAFVNYSN + NL+EGLSIVG LI++KVVES +QRH FF SRRSG+RMRSA
Sbjct: 300 SPLILYAFVNYSNSRDAKNTNLKEGLSIVGFLILSKVVESLSQRHWFFYSRRSGLRMRSA 359
Query: 353 LMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVL 412
LMVAVY+KQLKLSS R++HS GEIVNYIAVDAYRMGEFP+WFH+ W+ LQL L+IG+L
Sbjct: 360 LMVAVYRKQLKLSSSARRRHSAGEIVNYIAVDAYRMGEFPWWFHIAWTSTLQLVLSIGIL 419
Query: 413 FGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQ 472
FGVVG+G LPGLV LICGL+N PFAKILQ C ++FMI+QDERLRSTSEILN+MKIIKLQ
Sbjct: 420 FGVVGVGVLPGLVPLLICGLINFPFAKILQNCMAQFMISQDERLRSTSEILNSMKIIKLQ 479
Query: 473 SWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNA 532
SWE+KFK+L+E+ R KEF WLS+AQ+ KAYG+ +YWMSPTI+S+V+FLGCAL SAPLNA
Sbjct: 480 SWEDKFKNLVENLRAKEFIWLSKAQIMKAYGSFLYWMSPTIVSAVVFLGCALFNSAPLNA 539
Query: 533 STIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSD 592
TIFTVLA LR++GEPVRMIPEALSIMIQVKVSFDR+N LLD EL+ D R ++ +S
Sbjct: 540 GTIFTVLAMLRNLGEPVRMIPEALSIMIQVKVSFDRLNTILLDEELDGSDGNRRNINRSS 599
Query: 593 -RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
+V+IQ GNF WD E PTLR +NL+IKW QK+AVCG VGAGKSSLLYA+LGE+PKIS
Sbjct: 600 INAVEIQAGNFVWDHESVSPTLRDLNLEIKWGQKVAVCGPVGAGKSSLLYAVLGEVPKIS 659
Query: 652 GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
GTVN+ G+IAYVSQTSWIQ G+++DNIL+GKPMDK RY+ AIK CALDKDI +F HGDLT
Sbjct: 660 GTVNVCGTIAYVSQTSWIQGGTVQDNILFGKPMDKTRYENAIKVCALDKDIEDFSHGDLT 719
Query: 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKT 771
EIGQRG+N+SGGQKQRIQLARAVYNDADIYL DDPFSAVDAHTAA LFN+CVM AL +KT
Sbjct: 720 EIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKT 779
Query: 772 VILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDN 831
VILVTHQVEFLSEVD ILV+E G++TQSGNY+ LL AGTAFEQLV AH++AIT LD
Sbjct: 780 VILVTHQVEFLSEVDTILVMEDGKVTQSGNYENLLTAGTAFEQLVRAHKEAIT---ELDQ 836
Query: 832 AGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGL--TQLTEDEEMEIGDVGWKPF 889
+ G K EE G Y K SEGEIS +G QLT++EE +IGDVGWK F
Sbjct: 837 NNEKGTHK---------EESQG-YLTKNQSEGEISTEGKLGVQLTQEEEKQIGDVGWKTF 886
Query: 890 MDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASA 949
DY++ S+G +LC +L QS F+ LQ A+ +WLA AI++PKITS ILIGVYA +S +SA
Sbjct: 887 WDYISFSRGSLMLCWIMLGQSAFIALQTASMFWLALAIEVPKITSAILIGVYALISFSSA 946
Query: 950 VFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDI 1009
FVY RS F AHLGLKAS AFF+ FT +IF APMLFFDSTPVGRILTR SSDLSILDFDI
Sbjct: 947 GFVYVRSLFTAHLGLKASTAFFNSFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDI 1006
Query: 1010 PFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTT 1069
P+SI FVA+ G E++ I IM VTW VL+VAI AMVA ++VQ YY A+AREL+RINGTT
Sbjct: 1007 PYSITFVASVGLEIMVTICIMALVTWPVLIVAIPAMVASKYVQGYYQASARELMRINGTT 1066
Query: 1070 KAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQ 1129
KAPVMN+ AETS GVVT+RAFNM + FF+NYLKLVD DA+LFFH+N MEWL+LR+EALQ
Sbjct: 1067 KAPVMNFAAETSLGVVTVRAFNMTEIFFRNYLKLVDTDAALFFHSNVAMEWLVLRIEALQ 1126
Query: 1130 NLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189
NLT+ T+AL L+++P+GYV GLVGLSLSYAF+LTG+Q+F +RWYC L NYIISVERIKQ
Sbjct: 1127 NLTVITSALLLIIVPQGYVTSGLVGLSLSYAFSLTGSQIFWTRWYCNLLNYIISVERIKQ 1186
Query: 1190 FMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVV 1249
F+H+P EPPAI+ED RPPSSWP KGRI+L+ L+IRYRPNAPLVLKGITCTF EG+RVGVV
Sbjct: 1187 FIHLPVEPPAILEDHRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFKEGSRVGVV 1246
Query: 1250 GRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRT 1309
GRTGSGK+TLISALFRLV+PA G ILIDG++ICS+GLKDLR+KLSIIPQEPTLF+GS+RT
Sbjct: 1247 GRTGSGKSTLISALFRLVDPAKGYILIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRT 1306
Query: 1310 NLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369
NLDPLGLYSDDEIW+ALEKCQLK TIS LPN LDSSVSDEG NWS GQRQLFCLGRVLLK
Sbjct: 1307 NLDPLGLYSDDEIWEALEKCQLKETISRLPNLLDSSVSDEGGNWSLGQRQLFCLGRVLLK 1366
Query: 1370 RNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLL 1429
RNRILVLDEA ASIDSATDAILQ+IIRQEF CTVITVAHRVPTVIDSDMVMVLSYGKL+
Sbjct: 1367 RNRILVLDEATASIDSATDAILQQIIRQEFVECTVITVAHRVPTVIDSDMVMVLSYGKLV 1426
Query: 1430 EYDEPSKLMETNSSFSKLVAEYWSSCRRNSYQNLNNFQ 1467
EY+EPS+LMETNSSFSKLVAEYWSSCR+NS NL+ Q
Sbjct: 1427 EYEEPSRLMETNSSFSKLVAEYWSSCRKNSSSNLSRQQ 1464
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528827|ref|XP_003532999.1| PREDICTED: ABC transporter C family member 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1970 bits (5103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 986/1472 (66%), Positives = 1170/1472 (79%), Gaps = 25/1472 (1%)
Query: 9 GGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRRECVSIV 68
SWTC +FDL S C Q++IID++ L+F VFY SLLV R++ G R+ V +V
Sbjct: 34 ADFSWTCLRDFDLTSLCSQTSIIDILKLLFIAVFYTSLLVSLIRRHSECGSNRKNWVFLV 93
Query: 69 VSACCAVVGIAYL--GYCLWNLIAKNDSSMSWLVSTVRGLIWVSLAISLLVKRSKWIRML 126
VS CCA++ IA+ G LWN SWL ST R +W+SL ISL V+R+KWI+ L
Sbjct: 94 VSVCCALISIAHFCNGLKLWN-------QKSWLASTFRAFVWLSLTISLHVQRNKWIKSL 146
Query: 127 ITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPN--RED 184
++WW S +L ALNIEI+ + +T+ + ++ V+ LLF AF+N +F + ++
Sbjct: 147 NSIWWASSCVLASALNIEIMFKEHTVELFEMVQWLVHFSLLFCAFQNLPYFATSEGIQDT 206
Query: 185 KSLSEPLLA---EKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEAS 241
SLSEPL+A E QT+LG A LL KLTFSW+N LL LGYSKPLALE+IP L+PEDEA+
Sbjct: 207 TSLSEPLIAPRVETKQTQLGHATLLSKLTFSWVNSLLRLGYSKPLALEEIPFLLPEDEAN 266
Query: 242 FAYQKFAYAWDSLVRENNSNNNGN--LVRKVITNVYLKENIFIAICALLRTIAVVVGPLL 299
AYQ F +AW+SL+ ENN+NNN N LV + + KENI IA+ AL+R+I +++ PL+
Sbjct: 267 SAYQDFVHAWESLLSENNNNNNNNKNLVLWSVVRTFSKENILIALYALIRSICMIISPLI 326
Query: 300 LYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQ 359
LYAFVNYSN E +L+EG SI+G +II+KVVES QRH FGSRRSGM++RSALMVAVYQ
Sbjct: 327 LYAFVNYSNSTEADLKEGFSILGFMIISKVVESLCQRHFGFGSRRSGMKIRSALMVAVYQ 386
Query: 360 KQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLG 419
K LKLSS R++HSTGE+VNYIAVDAYR+GEFP+WFH+TW+ A+QL L+I +LFGVVG G
Sbjct: 387 KLLKLSSSARRRHSTGEVVNYIAVDAYRLGEFPWWFHITWTSAVQLVLSIVLLFGVVGAG 446
Query: 420 ALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFK 479
ALPGLV LICG+LNVPFAK++Q QS+FM+AQDERLR+TSEILN+MKIIKLQSWE+KFK
Sbjct: 447 ALPGLVPLLICGVLNVPFAKMIQNSQSQFMMAQDERLRATSEILNSMKIIKLQSWEDKFK 506
Query: 480 SLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVL 539
+L+ S R KEF WLS+AQ+ KAYG+ +YWM+PTI+ SV+F+GC+L SAPLNA IFTVL
Sbjct: 507 NLVLSLRAKEFIWLSKAQIIKAYGSFLYWMTPTIVPSVVFMGCSLFDSAPLNAGIIFTVL 566
Query: 540 ATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN--NDDVRRISLQKSDRSVKI 597
TLR MGEPVR+IPEALSIMIQVKVSFDR+N FLLD EL+ N R I Q S +V+I
Sbjct: 567 TTLRIMGEPVRLIPEALSIMIQVKVSFDRLNTFLLDEELDSINGYGRNIK-QSSVNAVEI 625
Query: 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY 657
Q GNF WD E PTLR VNL+IKW QKIAVCG VGAGKSSLLYA+LGEIPKISGTVN+
Sbjct: 626 QAGNFIWDHESVSPTLRDVNLEIKWGQKIAVCGPVGAGKSSLLYAVLGEIPKISGTVNVG 685
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
G+IAYVSQTSWIQSG++RDNIL+GKPMDK RY+ A K CALD DIN+F HGDLTEIGQRG
Sbjct: 686 GTIAYVSQTSWIQSGTVRDNILFGKPMDKTRYENATKVCALDMDINDFSHGDLTEIGQRG 745
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
+N+SGGQ+QRIQLARAVYNDADIYL DDPFSAVDAHTAA LFN+CVM AL +KTVILVTH
Sbjct: 746 INMSGGQRQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTH 805
Query: 778 QVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGA 837
QVEFL+EVD ILV+EGG++ QSG+Y++LL A TAFEQLV+AH+ +TG+ + +
Sbjct: 806 QVEFLTEVDTILVMEGGKVIQSGSYEDLLTARTAFEQLVSAHKATLTGVDQKNESEIDSD 865
Query: 838 EKVEKGRTARPEEPNGIYPRKESSEGEI--SVKGLTQLTEDEEMEIGDVGWKPFMDYLNV 895
+V PEE K I V T+DEE EIGD+GWKPF DY++
Sbjct: 866 IEV----MVHPEESQSFISLKSKWSRVILPRVNLGHSFTQDEEKEIGDIGWKPFWDYISF 921
Query: 896 SKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFR 955
SKG LLCL + AQ F+ LQ A+TYWLA AI+IPK+TSGILIGV++ S SAVF+Y R
Sbjct: 922 SKGSFLLCLTMSAQFAFIALQTASTYWLALAIEIPKVTSGILIGVFSLFSLLSAVFIYIR 981
Query: 956 SFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015
S AA+LGLKAS AFFS FT++IF APM FFDSTPVGRILTR SSDLSILD DIP+++
Sbjct: 982 SVLAANLGLKASIAFFSSFTSAIFNAPMFFFDSTPVGRILTRASSDLSILDLDIPYTLTL 1041
Query: 1016 VAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMN 1075
VA ++L I +M VTWQVL+VAI A VA ++Q YY A+ARELIRINGTTKAPVMN
Sbjct: 1042 VAFVAADVLVTICVMVSVTWQVLIVAIPATVASIYIQGYYQASARELIRINGTTKAPVMN 1101
Query: 1076 YTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT 1135
+ AETS GVVT+RAFN V+RFF NYLKLVD+DA+LFFH+ MEW ILR+E LQNLT+FT
Sbjct: 1102 FAAETSLGVVTVRAFNTVNRFFNNYLKLVDMDATLFFHSIVTMEWSILRIEVLQNLTVFT 1161
Query: 1136 AALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPP 1195
AAL L+L+P+GYV GLVGLSL+YA TL QVF SR + +N+IISVERI QF+ IP
Sbjct: 1162 AALLLILLPKGYVPSGLVGLSLAYALTLKEAQVFWSRMFSMSSNHIISVERIMQFIEIPA 1221
Query: 1196 EPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSG 1255
EPPAIVED RPPSSWP KGRI+LR L+IRY PNAPLVLKGI CTF EG RVGVVGRTGSG
Sbjct: 1222 EPPAIVEDNRPPSSWPSKGRIDLRALEIRYHPNAPLVLKGINCTFKEGNRVGVVGRTGSG 1281
Query: 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG 1315
KTTLISALFR+VEP+ G ILIDG++ICS+GLKDLR+KLSIIPQEPTLF+GS+RTNLDPLG
Sbjct: 1282 KTTLISALFRIVEPSSGDILIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLG 1341
Query: 1316 LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILV 1375
LY DDEIWKALEKCQLK TI LP LDSSVSDEG NWS GQ+QLFCLGRVLLKRNRILV
Sbjct: 1342 LYDDDEIWKALEKCQLKETIRKLPRLLDSSVSDEGGNWSLGQQQLFCLGRVLLKRNRILV 1401
Query: 1376 LDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPS 1435
LDEA ASIDSATDAILQ++IR+EF+ CTV+TVAHRVPTVIDSDMVMVLSYGKL+EYD+PS
Sbjct: 1402 LDEATASIDSATDAILQQVIRREFAECTVVTVAHRVPTVIDSDMVMVLSYGKLVEYDDPS 1461
Query: 1436 KLMETNSSFSKLVAEYWSSCRRNSYQNLNNFQ 1467
KLMETNS FS+LVAEYWSSCR+NS N+N Q
Sbjct: 1462 KLMETNSWFSRLVAEYWSSCRKNSSPNINRQQ 1493
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743104|emb|CBI35971.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1965 bits (5091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1000/1461 (68%), Positives = 1160/1461 (79%), Gaps = 101/1461 (6%)
Query: 4 LGTLLGGLSWTCEGEFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRRE 63
G GG SW C E DLGSFCIQ TI+DV+NL+F VF + L++G RK+ G RR+
Sbjct: 26 FGGYTGGFSWVCGEELDLGSFCIQRTILDVLNLLFLSVFSVILVIGYIRKHEISGCSRRD 85
Query: 64 CVSIVVSACCAVVGIAYLGYCLWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVKRSK 121
VS VS CCA+ GIAY+ W+L+ +N S + WLV VRGL W+SLA+SLLV+ SK
Sbjct: 86 WVSGGVSICCALTGIAYVSAGFWDLVVRNGGSQPLGWLVYFVRGLTWISLAVSLLVRSSK 145
Query: 122 WIRMLITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPN 181
W R+L LWW++F LV LNIEIL +T+ I + I+P VN LL+F AFRN H S +
Sbjct: 146 WSRILSFLWWLTFFSLVSTLNIEILVKTHNIKIFDIVPWLVNSLLIFCAFRNIFHSVSED 205
Query: 182 RE-DKSLSEPLLAEK--NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPED 238
DKS SEPLLA+K +TE+GK + KLTFSWINP+L LG SKPL LED+P L ED
Sbjct: 206 TTPDKSESEPLLAKKPVRRTEVGKISFITKLTFSWINPILCLGNSKPLVLEDVPPLASED 265
Query: 239 EASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPL 298
EA AYQKF+ AW+ L CALLRTI+
Sbjct: 266 EAELAYQKFSQAWEWL------------------------------CALLRTIS------ 289
Query: 299 LLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVY 358
G+ ++GCLII+KVVES +QRH F +RR GMRMRSALMVAVY
Sbjct: 290 ------------------GVFLMGCLIISKVVESVSQRHWFLNARRFGMRMRSALMVAVY 331
Query: 359 QKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGL 418
QKQLKLSSLGR++HS+G+IVNYIAVDAY GEFP+WFH WS LQLFL+IGVLFGVVG+
Sbjct: 332 QKQLKLSSLGRRRHSSGQIVNYIAVDAYTTGEFPWWFHSAWSYILQLFLSIGVLFGVVGV 391
Query: 419 GALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKF 478
GAL GL L+CGLLNVPFAKILQKCQS+ M+A+D+RLRSTSEILN+MK+IKLQSWE+KF
Sbjct: 392 GALSGLAPLLVCGLLNVPFAKILQKCQSQLMMARDQRLRSTSEILNSMKVIKLQSWEDKF 451
Query: 479 KSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTV 538
K+ IES R+ EFKWL+EAQ +K Y TV+YWMSPTI+SSV FLGCAL GSAPLNASTIFT+
Sbjct: 452 KNFIESLRDVEFKWLAEAQYKKCYNTVLYWMSPTIVSSVTFLGCALFGSAPLNASTIFTI 511
Query: 539 LATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQ 598
+A LR MGEPVRMIPEA+S+MIQ K+SF+R+NAF LD EL ++++RR++L SD SV I
Sbjct: 512 VAALRCMGEPVRMIPEAISVMIQAKISFERLNAFFLDDELKSEEMRRVTLPNSDHSVVIN 571
Query: 599 EGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG 658
GNFSW+PE A+ TLR +NL +K Q +AVCG VGAGKSS L+AILGEIPKISG+V+++G
Sbjct: 572 GGNFSWEPESAVLTLRDINLGVKRGQILAVCGPVGAGKSSFLFAILGEIPKISGSVDVFG 631
Query: 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
SIAYVSQTSWIQSG+IRDNIL GKPMD +Y+KAIKACALDKDIN+FDHGD TEIGQRGL
Sbjct: 632 SIAYVSQTSWIQSGTIRDNILCGKPMDTTKYEKAIKACALDKDINSFDHGDETEIGQRGL 691
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
N+SGGQKQRIQLARA+YNDA+IYL DDPFSAVDAHTAA LFN+CVMAAL KTV+LVTHQ
Sbjct: 692 NMSGGQKQRIQLARALYNDAEIYLLDDPFSAVDAHTAAILFNDCVMAALRHKTVMLVTHQ 751
Query: 779 VEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAE 838
VEFLS+V++ILVLEGG+ITQSG+Y+ELL GTAFEQLVNAH++AIT L +N G E
Sbjct: 752 VEFLSQVEKILVLEGGRITQSGSYEELLTTGTAFEQLVNAHKNAITVLDLSNNEG----E 807
Query: 839 KVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKG 898
+ +K PE F DYL VSKG
Sbjct: 808 ETQKLDHILPE--------------------------------------AFWDYLLVSKG 829
Query: 899 MSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFF 958
L+ G++AQ GFV LQAA+TYWLA I+IPKI++G+LIGVYAG+ST SAVFVY RSF
Sbjct: 830 ALLMFSGMIAQCGFVALQAASTYWLALGIEIPKISNGMLIGVYAGISTLSAVFVYLRSFL 889
Query: 959 AAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAA 1018
A LGLKASKAFF+GFT+SIF APM FFDSTPVGRILTR SSDL++LD +IPFSI+FV +
Sbjct: 890 IARLGLKASKAFFAGFTSSIFNAPMHFFDSTPVGRILTRASSDLTVLDSNIPFSIIFVLS 949
Query: 1019 SGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTA 1078
+G ++L IGIM VTW VL+VAIFAMVA ++VQ YY+A+ARELIRINGTTKAPVMNY A
Sbjct: 950 AGIDILTTIGIMASVTWPVLIVAIFAMVAAKYVQGYYLASARELIRINGTTKAPVMNYAA 1009
Query: 1079 ETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAAL 1138
E+S GVVTIRAFNMVDRFFQNYLKL+D DA LFF++N MEWL+LR+EALQNLTL TAAL
Sbjct: 1010 ESSLGVVTIRAFNMVDRFFQNYLKLIDTDAKLFFYSNAAMEWLVLRIEALQNLTLVTAAL 1069
Query: 1139 FLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP 1198
LVL+P+GYVAPGLVGLSLSYA LTGTQV LSRWYC L+NY++SVERIKQFMHIP EPP
Sbjct: 1070 LLVLLPKGYVAPGLVGLSLSYALALTGTQVMLSRWYCNLSNYMVSVERIKQFMHIPSEPP 1129
Query: 1199 AIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT 1258
AIV+ KRPPSSWP KGRIEL+ LKI+YRPN+PLVLKGITC F EGTRVGVVGRTGSGKTT
Sbjct: 1130 AIVDGKRPPSSWPSKGRIELQNLKIKYRPNSPLVLKGITCIFKEGTRVGVVGRTGSGKTT 1189
Query: 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYS 1318
LISALFRLVEP G+IL+DG+DICS+GLKDLR+KLSIIPQEPTLF+GS+RTNLDPLGLYS
Sbjct: 1190 LISALFRLVEPESGTILVDGLDICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYS 1249
Query: 1319 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDE 1378
++EIWKALEKCQLK TISSLPN LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDE
Sbjct: 1250 ENEIWKALEKCQLKATISSLPNLLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDE 1309
Query: 1379 ANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM 1438
A ASIDSATDAILQRIIRQEFSNCTVITVAHRVPTV+DSDMVMVLSYGKL+EYD+PS LM
Sbjct: 1310 ATASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVMDSDMVMVLSYGKLVEYDKPSNLM 1369
Query: 1439 ETNSSFSKLVAEYWSSCRRNS 1459
+TNSSFSKLV EYWSS ++ +
Sbjct: 1370 DTNSSFSKLVGEYWSSIQKQN 1390
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1467 | ||||||
| TAIR|locus:2077750 | 1453 | ABCC10 "ATP-binding cassette C | 0.918 | 0.927 | 0.433 | 5.8e-295 | |
| TAIR|locus:2020235 | 1514 | ABCC5 "ATP-binding cassette C5 | 0.485 | 0.470 | 0.411 | 2.3e-280 | |
| TAIR|locus:2090029 | 1514 | ABCC3 "ATP-binding cassette C3 | 0.851 | 0.824 | 0.426 | 1.6e-269 | |
| TAIR|locus:2090039 | 1466 | ABCC6 "ATP-binding cassette C6 | 0.914 | 0.914 | 0.401 | 1.3e-267 | |
| TAIR|locus:2090049 | 1493 | ABCC7 "ATP-binding cassette C7 | 0.897 | 0.881 | 0.395 | 1.8e-259 | |
| TAIR|locus:2081755 | 1539 | ABCC14 "ATP-binding cassette C | 0.395 | 0.376 | 0.452 | 8.9e-259 | |
| TAIR|locus:2043268 | 1516 | ABCC4 "ATP-binding cassette C4 | 0.856 | 0.829 | 0.397 | 6.3e-253 | |
| UNIPROTKB|E1C6S5 | 1552 | ABCC2 "Uncharacterized protein | 0.397 | 0.375 | 0.366 | 1.1e-189 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.351 | 0.323 | 0.389 | 9.7e-189 | |
| UNIPROTKB|O15439 | 1325 | ABCC4 "Multidrug resistance-as | 0.848 | 0.939 | 0.330 | 2.7e-187 |
| TAIR|locus:2077750 ABCC10 "ATP-binding cassette C10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2832 (1002.0 bits), Expect = 5.8e-295, P = 5.8e-295
Identities = 604/1392 (43%), Positives = 853/1392 (61%)
Query: 85 LWNLIAKNDSS--MSWLVSTVRGLIWVSLAISLLVKRSKWIRM----LITLWWMSFSLLV 138
+W ++ +N S + WLV ++G W+ + + + V+ ++ IR L++++ + L+
Sbjct: 76 IW-VLRENHSKPLILWLVILIQGFTWLFINLIICVRGTR-IRKSSLRLLSIFSFFYGLVS 133
Query: 139 LALNI-------EILARTYTINVVYIXXXXXXXXXXFSAFR----NFSHFTSP-NREDKS 186
L++ E+ RT ++V+ + + +R S P N D +
Sbjct: 134 SCLSVNNAVFGDELAVRTI-LDVLLLPGSVLLLLSAYKGYRFDESGESSLYEPLNAGDSN 192
Query: 187 -LSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQ 245
SE + ++ KAGL L+F W+N L+ G K L EDIP L E+ A Y
Sbjct: 193 GFSEKADFDNRVSQFAKAGLFSTLSFWWLNSLIKRGNVKDLEEEDIPELRKEERAETCYS 252
Query: 246 KFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVN 305
F R S+ ++++ + V+ +E + A ++ +AV GPLLL AF+
Sbjct: 253 LFEENLIEQKRRLGSSCQPSILKVTVLCVW-RELLTSGFFAFMKIVAVSAGPLLLNAFIL 311
Query: 306 YSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKLS 365
+ EGL + L +K++ES +QR +F L A+ +KQL+L+
Sbjct: 312 VAEGNASFRYEGLVLAVLLFFSKMIESLSQRQWYFRCRIVGLRVRSLLTAAINKKQLRLN 371
Query: 366 SLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXXX 425
+ R HS EI+NY VDAYR+GEFP+WFH W+ + Q
Sbjct: 372 NSSRLIHSGSEIMNYATVDAYRIGEFPYWFHQLWTTSFQLLIALGILFHSVGVATFSALA 431
Query: 426 XXXXCGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR 485
L N P AK+ K QSE M +QDERL++ +E L NMK++KL +WE FK +IE
Sbjct: 432 VIILTVLCNAPIAKLQNKFQSELMTSQDERLKACNESLVNMKVLKLYAWESHFKKVIEKL 491
Query: 486 REKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSM 545
R E K L Q+RKAY V++W SP +S+ F C PL AS +FT +ATLR +
Sbjct: 492 RNIELKSLKAVQMRKAYNAVLFWSSPVFVSAATFATCYFL-DIPLRASNVFTFVATLRLV 550
Query: 546 GEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS-VKIQEGNFSW 604
+PVRMIP+ + + IQ KV+F RI FL EL + RR + +++ + I+ +FSW
Sbjct: 551 QDPVRMIPDVIGVTIQAKVAFSRIATFLEAPELQGGERRRKQRSEGNQNAIIIKSASFSW 610
Query: 605 DPELAI-PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYV 663
+ + + P LR V+L++K+ +K+AVCG VG+GKS+LL AILGE P +SGT++ YG+IAYV
Sbjct: 611 EEKGSTKPNLRNVSLEVKFGEKVAVCGEVGSGKSTLLAAILGETPCVSGTIDFYGTIAYV 670
Query: 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
SQT+WIQ+G+IRDNIL+G MD+ RY + I+ +LDKD+ GD TEIG+RG+NLSGG
Sbjct: 671 SQTAWIQTGTIRDNILFGGVMDEHRYRETIQKSSLDKDLELLPDGDQTEIGERGVNLSGG 730
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
QKQRIQLARA+Y DADIYL DDPFSAVDAHTA++LF E VM AL K V+LVTHQV+FL
Sbjct: 731 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFQEYVMDALAGKAVLLVTHQVDFLP 790
Query: 784 EVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKG 843
D +L++ G+IT++ YQELL F+ LVNAHR+ G+E+V
Sbjct: 791 AFDSVLLMSDGEITEADTYQELLARSRDFQDLVNAHRET------------AGSERVVA- 837
Query: 844 RTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLC 903
P +P R SS+ ++ +K ++L + EE E GD G +P++ Y+N +KG
Sbjct: 838 -VENPTKPVKEINRVISSQSKV-LKP-SRLIKQEEREKGDTGLRPYIQYMNQNKGYIFFF 894
Query: 904 LGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLG 963
+ LAQ F Q W+A + P++++ LI VY + S + + RS +
Sbjct: 895 IASLAQVTFAVGQILQNSWMAANVDNPQVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMC 954
Query: 964 LKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023
+K+S + FS NS+F+APM F+DSTP+GRIL+R+SSDLSI+D D+PF ++FV AS
Sbjct: 955 MKSSASLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFVVASSVNT 1014
Query: 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRF-VQRYYIATARELIRINGTTKAPVMNYTAETSQ 1082
+G++ VTWQVL V++ MV + F +Q+YY TA+EL+RINGTT++ V N+ AE+
Sbjct: 1015 GCSLGVLAIVTWQVLFVSV-PMVYLAFRLQKYYFQTAKELMRINGTTRSYVANHLAESVA 1073
Query: 1083 GVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNXXXXXXXXXXVL 1142
G +TIRAF+ +RFF+ L L+D +AS FFH+ EWLI R+E + +L
Sbjct: 1074 GAITIRAFDEEERFFKKSLTLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMIL 1133
Query: 1143 IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202
+P G + G +G++LSY +L V+ + CYLAN+IISVER+ Q+ H+ PE P ++E
Sbjct: 1134 LPTGTFSSGFIGMALSYGLSLNMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVIE 1193
Query: 1203 DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISA 1262
+ RPP +WP GR+E+ L+IRYR +PLVLKGI+CTF LISA
Sbjct: 1194 ETRPPVNWPVTGRVEISDLQIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLISA 1253
Query: 1263 LFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEI 1322
LFRLVEP GG I++DGVDI +G+ DLR + IIPQ+PTLF G+VR NLDPL +SD EI
Sbjct: 1254 LFRLVEPVGGKIVVDGVDISKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAEI 1313
Query: 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
W+ L KCQLK + N LDS V ++G NWS GQRQLFCLGR +L+R+R+LVLDEA AS
Sbjct: 1314 WEVLGKCQLKEVVQEKENGLDSLVVEDGSNWSMGQRQLFCLGRAVLRRSRVLVLDEATAS 1373
Query: 1383 IDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM-ETN 1441
ID+ATD ILQ+ IR+EF++CTVITVAHR+PTV+D MV+ +S G+++EYDEP KLM + N
Sbjct: 1374 IDNATDLILQKTIRREFADCTVITVAHRIPTVMDCTMVLSISDGRIVEYDEPMKLMKDEN 1433
Query: 1442 SSFSKLVAEYWS 1453
S F KLV EYWS
Sbjct: 1434 SLFGKLVKEYWS 1445
|
|
| TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1416 (503.5 bits), Expect = 2.3e-280, Sum P(2) = 2.3e-280
Identities = 300/729 (41%), Positives = 431/729 (59%)
Query: 111 LAISLLVKRSKWIRMLITLWW-MSFSLLVLA-------LNIEILARTYTINVVYIXXXXX 162
L + L K S+ + L+ +WW ++FS+ + L IE +R + V +
Sbjct: 129 LVLHLKYKSSEKLPFLVRIWWFLAFSICLCTMYVDGRRLAIEGWSRCSSHVVANLAVTPA 188
Query: 163 XXXXXFSAFRNFSHFTSPNREDKSLSEPLLAEKNQ-----TELGKAGLLRKLTFSWINPL 217
F A+R S R L EPLL E+ T AGL+ +T SW++PL
Sbjct: 189 LGFLCFLAWRGVSGI-QVTRSSSDLQEPLLVEEEAACLKVTPYSTAGLVSLITLSWLDPL 247
Query: 218 LSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLK 277
LS G +PL L+DIP L P D A +Y+ W EN S +L R ++ + + K
Sbjct: 248 LSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCKSENPSKPP-SLARAIMKSFW-K 305
Query: 278 ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRH 337
E A+ A L T+ VGP L+ FV+Y E EG + G +K++E+ T R
Sbjct: 306 EAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFPHEGYVLAGIFFTSKLIETVTTRQ 365
Query: 338 CFFXXXXXXXXXXXALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHL 397
+ AL VY+K LKLSS+ ++ H++GEIVNY+AVD R+G++ ++ H
Sbjct: 366 WYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEIVNYMAVDVQRIGDYSWYLHD 425
Query: 398 TWSLALQXXXXXXXXXXXXXXXXXXXXXXXXXCGLLNVPFAKILQKCQSEFMIAQDERLR 457
W L +Q L+ +P AK+ + Q + M A+DER+R
Sbjct: 426 IWMLPMQIVLALAILYKSVGIAAVATLVATIISILVTIPLAKVQEDYQDKLMTAKDERMR 485
Query: 458 STSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSV 517
TSE L NM+++KLQ+WE++++ +E RE+E+ WL +A +A+ T I+W SP +++V
Sbjct: 486 KTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQAFVTFIFWSSPIFVAAV 545
Query: 518 IFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577
F G+ L A + + LAT R + EP+R P+ +S+M Q KVS DRI+ FL + E
Sbjct: 546 TFATSIFLGTQ-LTAGGVLSALATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEE 604
Query: 578 LNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637
L D I S+ +++I++G F WDP + PTL G+ + ++ ++AVCG+VG+GKS
Sbjct: 605 LQEDATVVIPRGLSNIAIEIKDGVFCWDPFSSRPTLSGIQMKVEKGMRVAVCGTVGSGKS 664
Query: 638 SLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACA 697
S + ILGEIPKISG V + G+ YVSQ++WIQSG+I +NIL+G PM+K +Y I+AC+
Sbjct: 665 SFISCILGEIPKISGEVRICGTTGYVSQSAWIQSGNIEENILFGSPMEKTKYKNVIQACS 724
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
L KDI F HGD T IG+RG+NLSGGQKQR+QLARA+Y DADIYL DDPFSA+DAHT +
Sbjct: 725 LKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDADIYLLDDPFSALDAHTGSD 784
Query: 758 LFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
LF + +++AL +KTV+ VTHQVEFL D ILVL+ G+I QSG Y +LL AGT F+ LV+
Sbjct: 785 LFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQSGKYDDLLQAGTDFKALVS 844
Query: 818 AHRDAITGL 826
AH +AI +
Sbjct: 845 AHHEAIEAM 853
|
|
| TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2592 (917.5 bits), Expect = 1.6e-269, P = 1.6e-269
Identities = 542/1271 (42%), Positives = 781/1271 (61%)
Query: 198 TELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRE 257
T +AG+L LTFSW++PL+ +G K L LED+P L D KF +S
Sbjct: 244 TPYSRAGILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLES---P 300
Query: 258 NNSNNNGNLVRKVITNVYLK---ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENL 314
+ +G K+I +Y E + A A + T+A VGP L+ FV Y N +
Sbjct: 301 DGGERSGVTTFKLIKALYFTAQWEILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYN 360
Query: 315 QEGLSIVGCLIITKVVESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKLSSLGRKKHST 374
EG +V K+VE +QRH FF AL+ +Y+K L LS ++ ++
Sbjct: 361 HEGYVLVITFFAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTS 420
Query: 375 GEIVNYIAVDAYRMGEFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXXXXXXXCGLLN 434
GEI+N++ VDA R+G F ++ H W + LQ L+N
Sbjct: 421 GEIINFMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLIN 480
Query: 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLS 494
PF ++ ++ Q + M A+D R++STSEIL NM+I+KLQ WE KF S I R+ E WL
Sbjct: 481 FPFGRMQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLK 540
Query: 495 EAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPE 554
+ A + ++W +PT++S F C L G PL + I + LAT R + EP+ +P+
Sbjct: 541 KYVYNSAVISFVFWGAPTLVSVSTFGACILLG-IPLESGKILSALATFRILQEPIYNLPD 599
Query: 555 ALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLR 614
+S+++Q KVS DR+ ++L L D V R+ SD +V++ SWD + PTL+
Sbjct: 600 TISMIVQTKVSLDRLASYLCLDNLQPDIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLK 659
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674
+N + K+AVCG+VG+GKSSLL ++LGE+PK+SG++ + G+ AYV+Q+ WIQSG I
Sbjct: 660 DINFKVFPGMKVAVCGTVGSGKSSLLSSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKI 719
Query: 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734
DNIL+GKPM++ RYDK ++AC+L KD+ GD T IG+RG+NLSGGQKQRIQ+ARA+
Sbjct: 720 EDNILFGKPMERERYDKVLEACSLSKDLEILSFGDQTVIGERGINLSGGQKQRIQIARAL 779
Query: 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794
Y DADIYLFDDPFSAVDAHT + LF E ++ L K+VI VTHQVEFL D ILV++ G
Sbjct: 780 YQDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDG 839
Query: 795 QITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGR-TARPEEPNG 853
+I+Q+G Y ++L +GT F +L+ AH++A+ + +D +EK G+ ++
Sbjct: 840 RISQAGKYNDILNSGTDFMELIGAHQEALAVVDSVD--ANSVSEKSALGQENVIVKDAIA 897
Query: 854 IYPRKESSE---GEI-SVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQ 909
+ + ES + ++ SV+ Q+ ++EE E G V + Y+ ++ G +L+ +L Q
Sbjct: 898 VDEKLESQDLKNDKLESVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALVPFILLGQ 957
Query: 910 SGFVGLQAAATYWLAYA------IQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLG 963
F LQ + YW+A+A +Q P S ++I VY ++ S++ + R+ G
Sbjct: 958 VLFQLLQIGSNYWMAWATPVSEDVQAPVKLSTLMI-VYVALAFGSSLCILLRATLLVTAG 1016
Query: 964 LKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023
K + F + IF++PM FFDSTP GRI++R S+D S +D ++P+ VA + +L
Sbjct: 1017 YKTATELFHKMHHCIFRSPMSFFDSTPSGRIMSRASTDQSAVDLELPYQFGSVAITVIQL 1076
Query: 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQG 1083
+ IIG+M+ V+W V +V I + A + QRYYIA AREL R+ G KAP++ + +ET G
Sbjct: 1077 IGIIGVMSQVSWLVFLVFIPVVAASIWYQRYYIAAARELSRLVGVCKAPLIQHFSETISG 1136
Query: 1084 VVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNXXXXXXXXXXVLI 1143
TIR+F+ RF + ++L D + F+T G MEWL R++ L + V I
Sbjct: 1137 ATTIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSI 1196
Query: 1144 PRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVED 1203
P G + P L GL+++Y +L Q +L C L N IISVERI Q+ +P EPP ++E
Sbjct: 1197 PTGVIDPSLAGLAVTYGLSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPLVIES 1256
Query: 1204 KRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISAL 1263
RP SWP +G +E+R L++RY P+ PLVL+GITCTF LI L
Sbjct: 1257 NRPEQSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTL 1316
Query: 1264 FRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIW 1323
FR+VEP+ G I IDGV+I ++GL DLR++LSIIPQ+PT+F G++R+NLDPL Y+DD+IW
Sbjct: 1317 FRIVEPSAGEIRIDGVNILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIW 1376
Query: 1324 KALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASI 1383
+AL+KCQL + KLDSSVS+ G+NWS GQRQL CLGRVLLKR++ILVLDEA AS+
Sbjct: 1377 EALDKCQLGDEVRKKEQKLDSSVSENGDNWSMGQRQLVCLGRVLLKRSKILVLDEATASV 1436
Query: 1384 DSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMET-NS 1442
D+ATD ++Q+ +R+ FS+CTVIT+AHR+ +VIDSDMV++LS G + EYD P +L+E +S
Sbjct: 1437 DTATDNLIQKTLREHFSDCTVITIAHRISSVIDSDMVLLLSNGIIEEYDTPVRLLEDKSS 1496
Query: 1443 SFSKLVAEYWS 1453
SFSKLVAEY S
Sbjct: 1497 SFSKLVAEYTS 1507
|
|
| TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2574 (911.2 bits), Expect = 1.3e-267, P = 1.3e-267
Identities = 552/1376 (40%), Positives = 803/1376 (58%)
Query: 106 LIWVSLAISLLVKRS----KWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYIX 158
L W S+++ L + + + + L+ +WW+ F S L ++ + + ++V ++
Sbjct: 101 LTWGSISVYLFGRYTNSCEQKVLFLLRVWWVFFFVVSCYHLVVDFVLYKKQEMVSVHFVI 160
Query: 159 XXXXXXXXXFSAFRNFSHFTSPNREDKSLSEPLL--AEKNQTE-----LGKAGLLRKLTF 211
+ L EPLL AE + E KAG+L +++F
Sbjct: 161 SDLVGVCAGLFLCCSCLWKKGEGERIDLLKEPLLSSAESSDNEEVTAPFSKAGILSRMSF 220
Query: 212 SWINPLLSLGYSKPLALEDIPSLVPED--EASFAYQKFAYAWDSLVRENNSNNNGNLVRK 269
SW++PL++LG K + ++D+P L D E+ F + WD R + L++
Sbjct: 221 SWMSPLITLGNEKIIDIKDVPQLDRSDTTESLFWIFRSKLEWDDGERRITTFK---LIKA 277
Query: 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKV 329
+ +V+ ++ + A+ A + T++ V P L+ FV Y N + +G +V + K+
Sbjct: 278 LFLSVW-RDIVLSALLAFVYTVSCYVAPYLMDNFVQYLNGNRQYKNQGYVLVTTFFVAKL 336
Query: 330 VESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMG 389
VE TQR FF L+ +Y+K L L ++ H++GEI+N +AVDA R+
Sbjct: 337 VECQTQRQWFFRGQKAGLGMRSVLVSMIYEKGLTLPCHSKQGHTSGEIINLMAVDADRIS 396
Query: 390 EFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXXXXXXXCGLLNVPFAKILQKCQSEFM 449
F ++ H W L LQ L N PFAK+ +K QS M
Sbjct: 397 AFSWFMHDPWILVLQVSLALWILYKSLGLGSIAAFPATILVMLANYPFAKLEEKFQSSLM 456
Query: 450 IAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509
++D R++ TSE+L NMKI+KLQ WE KF S I R E WL + + + W
Sbjct: 457 KSKDNRMKKTSEVLLNMKILKLQGWEMKFLSKILELRHIEAGWLKKFVYNSSAINSVLWA 516
Query: 510 SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569
+P+ IS+ F C L PL + I LAT R + P+ +PE +S+++Q KVS +RI
Sbjct: 517 APSFISATAFGACLLL-KIPLESGKILAALATFRILQGPIYKLPETISMIVQTKVSLNRI 575
Query: 570 NAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVC 629
+FL +L D V R+ S+ +V+I G FSWD IPTLR +N + +A+C
Sbjct: 576 ASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTFSWDDSSPIPTLRDMNFKVSQGMNVAIC 635
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARY 689
G+VG+GKSSLL +ILGE+PKISG + + G AY++Q+ WIQSG + +NIL+GKPM++ Y
Sbjct: 636 GTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPMEREWY 695
Query: 690 DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
D+ ++AC+L+KD+ D T IG+RG+NLSGGQKQRIQ+ARA+Y DADIYLFDDPFSA
Sbjct: 696 DRVLEACSLNKDLEILPFHDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSA 755
Query: 750 VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809
VDAHT + LF E ++ L KTVI VTHQVEFL E D ILV++ G+ITQ+G Y E+L +G
Sbjct: 756 VDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLILVMKDGKITQAGKYHEILDSG 815
Query: 810 TAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKG 869
T F +LV AH +A L +D+ G A EK T ++ N + KE E K
Sbjct: 816 TDFMELVGAHTEA---LATIDSCETGYAS--EKSTT---DKENEVLHHKEKQENGSDNKP 867
Query: 870 LTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI 929
QL ++EE E G VG+ + Y+ ++ G +++ L ++ Q F L + YW+ + +
Sbjct: 868 SGQLVQEEEREKGKVGFTVYKKYMALAYGGAVIPLILVVQVLFQLLSIGSNYWMTWVTPV 927
Query: 930 -----PKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPML 984
P ++ LI VY ++ AS+ + R+ A G K + F+ IF+A M
Sbjct: 928 SKDVEPPVSGFTLILVYVLLAVASSFCILIRALLVAMTGFKMATELFTQMHLRIFRASMS 987
Query: 985 FFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFA 1044
FFD+TP+GRIL R S+D S+ D +P +VA + +L IIG++ V WQVL+V I
Sbjct: 988 FFDATPMGRILNRASTDQSVADLRLPGQFAYVAIAAINILGIIGVIVQVAWQVLIVFIPV 1047
Query: 1045 MVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLV 1104
+ A + ++YYI+ AREL R+ G +++PV+++ +ET G+ TIR+F+ RF + ++L
Sbjct: 1048 VAACAWYRQYYISAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLS 1107
Query: 1105 DIDASLFFHTNGVMEWLILRVEALQNXXXXXXXXXXVLIPRGYVAPGLVGLSLSYAFTLT 1164
D + L FH+ G MEWL R+E L V P G + P L GL+++YA L
Sbjct: 1108 DCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLAGLAITYALNLN 1167
Query: 1165 GTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIR 1224
Q L C L N +ISVER+ Q+ +IP EPP ++E RP SWP +G I + L++R
Sbjct: 1168 TLQATLIWTLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEKSWPSRGEITICNLQVR 1227
Query: 1225 YRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSILIDGVDICSM 1284
Y P+ P+VL G+TCTF LI LFR+VEPA G I IDG++I S+
Sbjct: 1228 YGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILSI 1287
Query: 1285 GLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDS 1344
GL DLR +LSIIPQ+PT+F G++R+NLDPL Y+DD+IW+AL+ CQL + KLDS
Sbjct: 1288 GLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDDQIWEALDNCQLGDEVRKKELKLDS 1347
Query: 1345 SVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTV 1404
VS+ G+NWS GQRQL CLGRVLLKR+++LVLDEA ASID+ATD ++Q +R F++CTV
Sbjct: 1348 PVSENGQNWSVGQRQLVCLGRVLLKRSKLLVLDEATASIDTATDNLIQETLRHHFADCTV 1407
Query: 1405 ITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSS-FSKLVAEYWSSCRRNS 1459
IT+AHR+ +VIDSDMV++L G + E+D P++L+E SS FSKLVAEY +S S
Sbjct: 1408 ITIAHRISSVIDSDMVLLLDQGLIKEHDSPARLLEDRSSLFSKLVAEYTTSSESKS 1463
|
|
| TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2497 (884.0 bits), Expect = 1.8e-259, P = 1.8e-259
Identities = 538/1359 (39%), Positives = 789/1359 (58%)
Query: 125 MLITLWWM---SFSLLVLALNIEILARTYTINV-VYIXXXXXXXXXXFSAFRNFSHFTSP 180
+L+ +WW+ FS L ++I + + ++V + + F +
Sbjct: 136 ILLRVWWVLYFMFSCYRLLVDIALYKKQELVSVHLLLSDVLAVSVGLFLCYSCLQKQGQG 195
Query: 181 NREDKSLSEPLL---------------AEKNQ--TELGKAGLLRKLTFSWINPLLSLGYS 223
R + L EPLL AE ++ T AG L ++FSW++PL+ LG
Sbjct: 196 ERINLLLEEPLLNGAESSAATSVQLDKAEDDEVVTPFSNAGFLSHVSFSWMSPLIVLGNE 255
Query: 224 KPLALEDIPSLVPEDEASFAYQKFA--YAWDSLVRENNSNNNGNLVRKVITNVYLKENIF 281
K + ED+P + D A + F WD R + L++ + +V+ ++ +
Sbjct: 256 KIIDSEDVPQVDNSDRAEKLFWIFRSKLEWDDGERRITTYK---LIKALFFSVW-RDILL 311
Query: 282 IAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFX 341
+ A + T++ V P L+ FV Y N + +G+ +V + K+VE +R+ +F
Sbjct: 312 STLFAFVYTVSCYVAPYLMDTFVQYLNGQRQYSNQGVVLVTTFFVAKLVECQARRNWYFR 371
Query: 342 XXXXXXXXXXALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSL 401
L+ +Y+K L L ++ H++GEI+N + VDA R+ F ++ H W L
Sbjct: 372 LQKAGIGMRSVLVSMIYEKGLTLPCYSKQGHTSGEIINLMTVDAERISAFSWYMHDPWIL 431
Query: 402 ALQXXXXXXXXXXXXXXXXXXXXXXXXXCGLLNVPFAKILQKCQSEFMIAQDERLRSTSE 461
LQ L N+P AK+ +K Q M ++D R++ TSE
Sbjct: 432 VLQISLALLILYRSLGLGSIAAFAATFLVMLGNIPLAKLEEKFQGNLMESKDNRMKKTSE 491
Query: 462 ILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLG 521
L NM+I+KLQ WE KF I R E WL + A + + W +P+ +S+ F
Sbjct: 492 ALLNMRILKLQGWEMKFLHKILDLRGIEAGWLKKFVYNSAAISSVLWAAPSFVSATAFGA 551
Query: 522 CALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND 581
C L PL + I LAT R + P+ +P+ +S+++Q KVS DRI FL +L D
Sbjct: 552 CMLL-KIPLESGKIIAALATFRILQTPIYKLPDTISMIVQTKVSLDRIATFLCLDDLQQD 610
Query: 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLY 641
+ R+ S V++ G FSWD IPTL+ + I IA+CG+VG+GKSSLL
Sbjct: 611 GMERLPSGSSKMDVEVSNGAFSWDDSSPIPTLKDIRFKIPHGMNIAICGTVGSGKSSLLS 670
Query: 642 AILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
+ILGE+PKISG + + G AY++Q+ WIQSG + +NIL+GKPM + Y + ++AC+L+KD
Sbjct: 671 SILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPMQREWYQRVLEACSLNKD 730
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ F D T IG+RG+NLSGGQKQRIQ+ARA+Y DADIYLFDDPFSAVDAHT + LF E
Sbjct: 731 LEVFPFRDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKE 790
Query: 762 CVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRD 821
++ L KTVI VTHQ+EFL E D ILV++ G+ITQ+G Y E+L +GT F +LV AH D
Sbjct: 791 VLLGLLRNKTVIYVTHQLEFLPEADLILVMKDGRITQAGKYNEILESGTDFMELVGAHTD 850
Query: 822 AITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEI 881
A L +D+ +G A + T++ + + ++E E S KG QL ++EE E
Sbjct: 851 A---LAAVDSYEKGSASA--QSTTSKESKVSNDEEKQE--EDLPSPKG--QLVQEEEREK 901
Query: 882 GDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPK----ITSG-I 936
G VG+ + Y+ ++ G +L+ + ++ Q F L + YW+A+ + K + SG
Sbjct: 902 GKVGFTVYQKYMKLAYGGALVPIILVVQILFQVLNIGSNYWMAWVTPVSKDVKPLVSGST 961
Query: 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILT 996
LI VY ++TAS+ + R+ +A G K + F+ IF+A M FFD+TP+GRIL
Sbjct: 962 LILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQMHFRIFRASMSFFDATPIGRILN 1021
Query: 997 RLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYI 1056
R S+D S +D +P +A + +L IIG+M V WQVL+V I + A + ++YYI
Sbjct: 1022 RASTDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVAWQVLIVFIPVIAACTWYRQYYI 1081
Query: 1057 ATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNG 1116
+ AREL R++G +++P++ + +ET G+ TIR+F+ RF + ++L D + L FH
Sbjct: 1082 SAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYSRLRFHAIS 1141
Query: 1117 VMEWLILRVEALQNXXXXXXXXXXVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176
MEWL R++ L V +P G + P GL+++YA L Q L C
Sbjct: 1142 AMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFAGLAVTYALNLNSLQATLIWTLCD 1201
Query: 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGI 1236
L N +ISVER+ Q++ IP EP ++E RP SWP +G I + L++RY P+ P+VL+G+
Sbjct: 1202 LENKMISVERMLQYIDIPSEPSLVIESTRPEKSWPCRGEITICNLQVRYGPHLPMVLRGL 1261
Query: 1237 TCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
TCTF LI LFR+VEPA G I IDG++I ++GL DLR +LSII
Sbjct: 1262 TCTFRGGLKTGIVGRTGCGKSTLIQTLFRIVEPAAGEIRIDGINILTIGLHDLRSRLSII 1321
Query: 1297 PQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAG 1356
PQEPT+F G+VR+NLDPL Y+DD+IW+AL+KCQL I KLDS VS+ G+NWS G
Sbjct: 1322 PQEPTMFEGTVRSNLDPLEEYADDQIWEALDKCQLGDEIRKKELKLDSPVSENGQNWSVG 1381
Query: 1357 QRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID 1416
QRQL CLGRVLLKR+++L+LDEA AS+D+ATD ++Q +RQ FS CTVIT+AHR+ +VID
Sbjct: 1382 QRQLVCLGRVLLKRSKVLILDEATASVDTATDTLIQETLRQHFSGCTVITIAHRISSVID 1441
Query: 1417 SDMVMVLSYGKLLEYDEPSKLMET-NSSFSKLVAEYWSS 1454
SDMV++L G + E+D P++L+E +SSFSKLVAEY +S
Sbjct: 1442 SDMVLLLDQGLIEEHDSPARLLEDKSSSFSKLVAEYTAS 1480
|
|
| TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1310 (466.2 bits), Expect = 8.9e-259, Sum P(2) = 8.9e-259
Identities = 265/585 (45%), Positives = 366/585 (62%)
Query: 871 TQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP 930
++L ++EE E+G V ++ + Y + G + L V + A+ YWLAY
Sbjct: 949 SRLIKEEEREVGQVSFQVYKLYSTEAYGWWGMILVVFFSVAWQASLMASDYWLAYETSAK 1008
Query: 931 KITS---GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD 987
S + I VY ++ S V V R+F+ HLGLK ++ FF NS+ APM FFD
Sbjct: 1009 NEVSFDATVFIRVYVIIAAVSIVLVCLRAFYVTHLGLKTAQIFFKQILNSLVHAPMSFFD 1068
Query: 988 STPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAI-FAMV 1046
+TP GRIL+R S+D + +D IPF I VA T LL+I + W + I +
Sbjct: 1069 TTPSGRILSRASTDQTNVDIFIPFMIGLVATMYTTLLSIFIVTCQYAWPTVFFIIPLGWL 1128
Query: 1047 AVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDI 1106
+ + + YY+A++REL R++ TKAPV+++ +E+ GV+TIRAF F Q +K V+
Sbjct: 1129 NIWY-RGYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRAFKKQPMFRQENVKRVNA 1187
Query: 1107 DASLFFHTNGVMEWLILRVEALQNXXXXXXXXXXVLIPRGYVAPGLVGLSLSYAFTLTGT 1166
+ + FH NG EWL R+E + + V++P + P VGLSLSY +L G
Sbjct: 1188 NLRMDFHNNGSNEWLGFRLELIGSWVLCISALFMVMLPSNIIKPENVGLSLSYGLSLNGV 1247
Query: 1167 QVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYR 1226
+ C++ N ++SVERIKQF IP E +++ RPP +WP+KG I L +K+RYR
Sbjct: 1248 LFWAIYLSCFIENKMVSVERIKQFTDIPAEAKWEIKESRPPPNWPYKGNIRLEDVKVRYR 1307
Query: 1227 PNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSILIDGVDICSMGL 1286
PN PLVLKG+T LI LFRLVEP+GG I+IDG+DIC++GL
Sbjct: 1308 PNTPLVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDICTLGL 1367
Query: 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSV 1346
DLR + IIPQEP LF G+VR+N+DP YSD+EIWK+LE+CQLK ++S P KLDS V
Sbjct: 1368 HDLRSRFGIIPQEPVLFEGTVRSNIDPTEKYSDEEIWKSLERCQLKDVVASKPEKLDSLV 1427
Query: 1347 SDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVIT 1406
+D GENWS GQRQL CLGRV+LKR+RIL LDEA AS+DS TDA++Q+IIR++FS+CT+I+
Sbjct: 1428 ADNGENWSVGQRQLLCLGRVMLKRSRILFLDEATASVDSQTDAMIQKIIREDFSDCTIIS 1487
Query: 1407 VAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451
+AHR+PTV+D D V+V+ GK EYD P +L+E S F+ LV EY
Sbjct: 1488 IAHRIPTVMDCDRVLVIDAGKAKEYDSPVRLLERQSLFAALVQEY 1532
|
|
| TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2397 (848.8 bits), Expect = 6.3e-253, Sum P(3) = 6.3e-253
Identities = 508/1279 (39%), Positives = 746/1279 (58%)
Query: 188 SEPLLAEK--NQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQ 245
S+ + EK N + A + K + W+NPLLS GY PL LE +P+L PE +A
Sbjct: 238 SDAVSVEKSDNVSLYASASVFSKTFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAERLAL 297
Query: 246 KFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVN 305
F +W S N+ + +R + + KE +F AI A++R + VGP+L+ +FV+
Sbjct: 298 LFESSWPK-----PSENSSHPIRTTLLRCFWKEILFTAILAIVRLGVMYVGPVLIQSFVD 352
Query: 306 YSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKLS 365
+++ + +G +V L++ K VE T F L+ A+Y+K LKL+
Sbjct: 353 FTSGKRSSPWQGYYLVLILLVAKFVEVLTTHQFNFDSQKLGMLIRSTLITALYKKGLKLT 412
Query: 366 SLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXXX 425
R+ H G+IVNY+AVDA ++ + H W + LQ
Sbjct: 413 GSARQNHGVGQIVNYMAVDAQQLSDMMLQLHAIWLMPLQVTVALVLLYGSLGASVITAVI 472
Query: 426 XXXXCGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR 485
+ + + Q M +D R+++T+E+LN M++IK Q+WE F I
Sbjct: 473 GLTGVFVFILLGTQRNNGYQFSLMGNRDSRMKATNEMLNYMRVIKFQAWENHFNKRILKF 532
Query: 486 REKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSM 545
R+ EF WLS+ A ++ W +P +IS++ F AL L+A T+FT + +
Sbjct: 533 RDMEFGWLSKFLYSIAGNIIVLWSTPVLISALTF-ATALALGVKLDAGTVFTTTTIFKIL 591
Query: 546 GEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWD 605
EP+R P+++ + Q +S R++++++ EL+ D V R + +V++++G+FSWD
Sbjct: 592 QEPIRTFPQSMISLSQAMISLGRLDSYMMSKELSEDAVERALGCDGNTAVEVRDGSFSWD 651
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ 665
E P L +N +K + A+ G+VG+GKSSLL ++LGE+ +ISG V + GS YV+Q
Sbjct: 652 DEDNEPALSDINFKVKKGELTAIVGTVGSGKSSLLASVLGEMHRISGQVRVCGSTGYVAQ 711
Query: 666 TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
TSWI++G+++DNIL+G PM + +Y+K + C+L+KD+ + GD TEIG+RG+NLSGGQK
Sbjct: 712 TSWIENGTVQDNILFGLPMVREKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQK 771
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV 785
QRIQLARAVY + D+YL DD FSAVDAHT + +F +CV AL+ KTV+LVTHQV+FL V
Sbjct: 772 QRIQLARAVYQECDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNV 831
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGL-GPLDNAGQGGAEKVEKG- 843
D ILV+ G+I +SG Y EL+ +G F +LV AH ++ + D+A + +
Sbjct: 832 DCILVMRDGKIVESGKYDELVSSGLDFGELVAAHETSMELVEAGADSAAVATSPRTPTSP 891
Query: 844 RTARP----EEPNGIYPRKE---SSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVS 896
+ P E P+ E S G V+ ++L ++EE E G V + Y +
Sbjct: 892 HASSPRTSMESPHLSDLNDEHIKSFLGSHIVEDGSKLIKEEERETGQVSLGVYKQYCTEA 951
Query: 897 KGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITS---GILIGVYAGVSTASAVFVY 953
G + L + + G A+ YWLAY S + I Y ++ S V V
Sbjct: 952 YGWWGIVLVLFFSLTWQGSLMASDYWLAYETSAKNAISFDASVFILGYVIIALVSIVLVS 1011
Query: 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSI 1013
RS++ HLGLK ++ FF NSI APM FFD+TP GRIL+R S+D + +D IPF +
Sbjct: 1012 IRSYYVTHLGLKTAQIFFRQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDILIPFML 1071
Query: 1014 VFVAASGTELLAIIGIMTFVTWQVLVVAI-FAMVAVRFVQRYYIATARELIRINGTTKAP 1072
V + T LL+I + W I + + + + YY+A++REL R++ TKAP
Sbjct: 1072 GLVVSMYTTLLSIFIVTCQYAWPTAFFVIPLGWLNIWY-RNYYLASSRELTRMDSITKAP 1130
Query: 1073 VMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNXX 1132
++++ +E+ GV+TIR+F + F Q +K V+ + + FH NG EWL R+E + +
Sbjct: 1131 IIHHFSESIAGVMTIRSFRKQELFRQENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWV 1190
Query: 1133 XXXXXXXXVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH 1192
VL+P + P VGLSLSY +L F C++ N ++SVERIKQF
Sbjct: 1191 LCISALFMVLLPSNVIRPENVGLSLSYGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTD 1250
Query: 1193 IPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXX 1252
IP E ++ PPS+WPF G + L LK+RYRPN PLVLKGIT
Sbjct: 1251 IPSESEWERKETLPPSNWPFHGNVHLEDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRT 1310
Query: 1253 XXXXXXLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD 1312
LI LFRLVEP+GG I+IDG+DI ++GL DLR + IIPQEP LF G+VR+N+D
Sbjct: 1311 GSGKSTLIQVLFRLVEPSGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNID 1370
Query: 1313 PLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372
P YSD+EIWK+LE+CQLK +++ P KLDS V D GENWS GQRQL CLGRV+LKR+R
Sbjct: 1371 PTEQYSDEEIWKSLERCQLKDVVATKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSR 1430
Query: 1373 ILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYD 1432
+L LDEA AS+DS TDA++Q+IIR++F++CT+I++AHR+PTV+D D V+V+ GK E+D
Sbjct: 1431 LLFLDEATASVDSQTDAVIQKIIREDFASCTIISIAHRIPTVMDGDRVLVIDAGKAKEFD 1490
Query: 1433 EPSKLMETNSSFSKLVAEY 1451
P++L+E S F+ LV EY
Sbjct: 1491 SPARLLERPSLFAALVQEY 1509
|
|
| UNIPROTKB|E1C6S5 ABCC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 998 (356.4 bits), Expect = 1.1e-189, Sum P(4) = 1.1e-189
Identities = 222/606 (36%), Positives = 343/606 (56%)
Query: 859 ESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLN-VSKGMSL-LCLGVLAQ-SGFVGL 915
++ E +KG +L E E +E G V + ++ YL V G S + + + + + +VG
Sbjct: 945 KAQEEPNKIKG-QRLIEKEAVETGKVKFSMYLRYLRAVGLGFSFCVAMSYVGEYAAYVGT 1003
Query: 916 QAAATYWLAYAIQI-----PKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAF 970
+ W A + P + IGV+ + + A+F++ + ++H ++AS+
Sbjct: 1004 NLWLSAWTDDAERYRNETYPVQQRDLRIGVFGALGVSQALFLFLATILSSHGAMRASRIV 1063
Query: 971 FSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSI-----VFVAASGTELLA 1025
++I + PM FFD+TP GRI+ R + D+ +D IP S F+ T L
Sbjct: 1064 HEQLLSNILRVPMSFFDTTPTGRIVNRFAKDIFTVDETIPMSFRSWLNCFMGIIST--LL 1121
Query: 1026 IIGIMT-FVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGV 1084
+I + T F T ++ + IF FV R+YI+T+R+L R++ T++P+ ++ ET G+
Sbjct: 1122 MIALATPFFTVVIVPLGIFYY----FVLRFYISTSRQLRRLDSVTRSPIYSHFGETVSGL 1177
Query: 1085 VTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNXXXXXXXXXXVLIP 1144
IRA+ RF Q + +DI+ + WL +R+E + + V I
Sbjct: 1178 SVIRAYGHQQRFLQQNERTMDINQKSVYSWIVSNRWLAIRLEFVGSLVVFFSALLAV-IS 1236
Query: 1145 RGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDK 1204
R + G+VGLS+S A +T T +L R L I++VER+ ++ + E P + DK
Sbjct: 1237 RNSLEGGIVGLSVSSALNVTQTLNWLVRVSSELETNIVAVERVHEYTKVKREAPWVT-DK 1295
Query: 1205 RPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEXXXXXXXXXXXXXXXXLISALF 1264
RPP SWP KG I+ K+RYRP LVL+GITC+ L + LF
Sbjct: 1296 RPPHSWPSKGEIQFVDYKVRYRPELELVLQGITCSIGSTEKVGVVGRTGAGKSSLTNCLF 1355
Query: 1265 RLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWK 1324
R++E AGG I+IDG+DI ++GL DLR L+IIPQ+P LF G++R NLDP Y+D+E+WK
Sbjct: 1356 RVLEAAGGKIIIDGLDIATIGLHDLRQNLTIIPQDPVLFTGTLRMNLDPFDQYTDEEVWK 1415
Query: 1325 ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
ALE LK + LP +L VS+ GEN S GQRQL CL R LL++ +IL+LDEA A++D
Sbjct: 1416 ALELAHLKAYVQELPERLQHVVSEGGENLSVGQRQLVCLARALLRKAKILILDEATAAVD 1475
Query: 1385 SATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSF 1444
TD ++Q IR F++CTV+T+AHR+ T++DS+ VMV+ GK++E+D P KL++ S F
Sbjct: 1476 LETDHLIQTTIRSAFADCTVLTIAHRLHTIMDSNRVMVMHAGKIVEFDSPEKLLQKQSVF 1535
Query: 1445 SKLVAE 1450
S + +
Sbjct: 1536 SAMAKD 1541
|
|
| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 956 (341.6 bits), Expect = 9.7e-189, Sum P(2) = 9.7e-189
Identities = 208/534 (38%), Positives = 302/534 (56%)
Query: 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTR 997
+ +Y S + + RSF +K SK F ++ +PM FFD+TP+GRIL R
Sbjct: 1068 LSIYVAFSCGTIAATFLRSFSMVFGSIKGSKLFHEKMFKAVILSPMSFFDTTPIGRILNR 1127
Query: 998 LSSDLSILDFDIPFSI-VFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVR----FVQ 1052
S D +D I ++ +F+ ++G + + W V I AMV V F+Q
Sbjct: 1128 FSKDQLTIDESIARTLGMFL----NTFCQVVGSIIVIAW-VSPFIILAMVPVGALFYFIQ 1182
Query: 1053 RYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFF 1112
+YY+ ++REL R+ G +++P+ + +ET GV TIRAF V RF +L+D + ++
Sbjct: 1183 KYYLNSSRELTRLEGVSRSPIYAHFSETLAGVTTIRAFKDVARFVTENERLLDENQKCYY 1242
Query: 1113 HTNGVMEWLILRVEALQNXXXXXXXXXXVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSR 1172
WL +R+E L VL R + G GL ++YA +TG ++ R
Sbjct: 1243 INISSNRWLAIRLEFLGACLVSCAVLYTVLA-RSRIEAGTAGLVITYALAITGNMNWMVR 1301
Query: 1173 WYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLV 1232
C L N ++S+ERI+++ +P E P + DK P SWP G+I + L + YR V
Sbjct: 1302 MSCDLENSVVSIERIQEYCLLPSEAP-LFNDKSVPMSWPSHGKIVFKNLWLTYREGLDPV 1360
Query: 1233 LKGITCTFSEXXXXXXXXXXXXXXXXLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292
L+GI CT L ALFRLVEP G+I IDG+DI +GL LR +
Sbjct: 1361 LRGINCTIEPKTKVGIVGRTGAGKSSLTQALFRLVEPLRGTIEIDGIDITELGLNPLRSR 1420
Query: 1293 LSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGEN 1352
++IIPQ+P LF GSVR NLDP Y D EIW+A+E L I L LD+ V D G+N
Sbjct: 1421 MAIIPQDPVLFAGSVRYNLDPFDQYDDHEIWEAIENAHLLKAIKDLDGGLDAMVQDGGDN 1480
Query: 1353 WSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVP 1412
+S GQRQL +GR LLK+ I+VLDEA++SID A+DA++Q IR +F++CTV+T+AHR+
Sbjct: 1481 FSVGQRQLLVIGRALLKKANIIVLDEASSSIDIASDALIQETIRTKFADCTVLTIAHRLG 1540
Query: 1413 TVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYWSSCRRN-SYQNLNN 1465
T+ DSD +MVL G+L+EYD PS+L++ S Y+S + + S QN++N
Sbjct: 1541 TIADSDKIMVLDKGELIEYDSPSELLKNQDSI------YYSLVKASESKQNIDN 1588
|
|
| UNIPROTKB|O15439 ABCC4 "Multidrug resistance-associated protein 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1816 (644.3 bits), Expect = 2.7e-187, P = 2.7e-187
Identities = 426/1289 (33%), Positives = 683/1289 (52%)
Query: 190 PLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAY 249
P+ E L A L ++ F W+NPL +G+ + L +D+ S++PED + ++
Sbjct: 3 PVYQEVKPNPLQDANLCSRVFFWWLNPLFKIGHKRRLEEDDMYSVLPEDRSQHLGEELQG 62
Query: 250 AWDS-LVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN 308
WD ++R N +L R +I Y K + + I L+ A V+ P+ L +NY
Sbjct: 63 FWDKEVLRAENDAQKPSLTRAII-KCYWKSYLVLGIFTLIEESAKVIQPIFLGKIINYFE 121
Query: 309 RGEEN----LQEGLSIVGCLIITKVVESFTQRHCFFXXXXXXXXXXXALMVAVYQKQLKL 364
+ L + L ++ + F+ A+ +Y+K L+L
Sbjct: 122 NYDPMDSVALNTAYAYATVLTFCTLILAILHHLYFYHVQCAGMRLRVAMCHMIYRKALRL 181
Query: 365 SSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQXXXXXXXXXXXXXXXXXXXX 424
S++ K +TG+IVN ++ D + + + H W+ LQ
Sbjct: 182 SNMAMGKTTTGQIVNLLSNDVNKFDQVTVFLHFLWAGPLQAIAVTALLWMEIGISCLAGM 241
Query: 425 XXXXXCGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES 484
L F K+ +S+ D R+R+ +E++ ++IIK+ +WE+ F +LI +
Sbjct: 242 AVLIILLPLQSCFGKLFSSLRSKTATFTDARIRTMNEVITGIRIIKMYAWEKSFSNLITN 301
Query: 485 RREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRS 544
R+KE + + + ++ + II V F L GS + AS +F + +
Sbjct: 302 LRKKEISKILRSSCLRGMNLASFFSASKIIVFVTFTTYVLLGSV-ITASRVFVAVTLYGA 360
Query: 545 MGEPVRMI-PEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFS 603
+ V + P A+ + + VS RI FLL E++ + R++ + V +Q+
Sbjct: 361 VRLTVTLFFPSAIERVSEAIVSIRRIQTFLLLDEISQRN-RQLP-SDGKKMVHVQDFTAF 418
Query: 604 WDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYV 663
WD PTL+G++ ++ + +AV G VGAGKSSLL A+LGE+ G V+++G IAYV
Sbjct: 419 WDKASETPTLQGLSFTVRPGELLAVVGPVGAGKSSLLSAVLGELAPSHGLVSVHGRIAYV 478
Query: 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
SQ W+ SG++R NIL+GK +K RY+K IKACAL KD+ + GDLT IG RG LSGG
Sbjct: 479 SQQPWVFSGTLRSNILFGKKYEKERYEKVIKACALKKDLQLLEDGDLTVIGDRGTTLSGG 538
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
QK R+ LARAVY DADIYL DDP SAVDA + LF C+ L +K ILVTHQ+++L
Sbjct: 539 QKARVNLARAVYQDADIYLLDDPLSAVDAEVSRHLFELCICQILHEKITILVTHQLQYLK 598
Query: 784 EVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN-----AHRDAITGLGPLDNAGQGGAE 838
+IL+L+ G++ Q G Y E L +G F L+ + + + G L N
Sbjct: 599 AASQILILKDGKMVQKGTYTEFLKSGIDFGSLLKKDNEESEQPPVPGTPTLRNR-TFSES 657
Query: 839 KVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKG 898
V +++RP +G ES + E +V +T L+E+ E G VG++ + +Y
Sbjct: 658 SVWSQQSSRPSLKDGAL---ESQDTE-NVP-VT-LSEENRSE-GKVGFQAYKNYFRAGAH 710
Query: 899 ----MSLLCLGVLAQSGFVGLQAAATYW------LAYAIQ-----IPKITSGILIGVYAG 943
+ L+ L AQ +V +YW L + K+ +G+Y+G
Sbjct: 711 WIVFIFLILLNTAAQVAYVLQDWWLSYWANKQSMLNVTVNGGGNVTEKLDLNWYLGIYSG 770
Query: 944 VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLS 1003
++ A+ +F RS ++ + +S+ + SI KAP+LFFD P+GRIL R S D+
Sbjct: 771 LTVATVLFGIARSLLVFYVLVNSSQTLHNKMFESILKAPVLFFDRNPIGRILNRFSKDIG 830
Query: 1004 ILDFDIPFSIVFVAASGTELLAIIGI-MTFVTWQVLVVAIFAMVAVRFVQRYYIATAREL 1062
LD +P + + + +++ ++ + + + W + + ++ + F++RY++ T+R++
Sbjct: 831 HLDDLLPLTFLDFIQTLLQVVGVVSVAVAVIPWIAIPLVPLGIIFI-FLRRYFLETSRDV 889
Query: 1063 IRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLI 1122
R+ TT++PV ++ + + QG+ TIRA+ +R + + D+ + +F W
Sbjct: 890 KRLESTTRSPVFSHLSSSLQGLWTIRAYKAEERCQELFDAHQDLHSEAWFLFLTTSRWFA 949
Query: 1123 LRVEALQNXXXXXXXXXXVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYII 1182
+R++A+ +++ + A G VGL+LSYA TL G + R + N +I
Sbjct: 950 VRLDAICAMFVIIVAFGSLILAKTLDA-GQVGLALSYALTLMGMFQWCVRQSAEVENMMI 1008
Query: 1183 SVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSE 1242
SVER+ ++ + E P + KRPP +WP +G I + Y P PLVLK +T
Sbjct: 1009 SVERVIEYTDLEKEAPWEYQ-KRPPPAWPHEGVIIFDNVNFMYSPGGPLVLKHLTALIKS 1067
Query: 1243 XXXXXXXXXXXXXXXXLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302
LISALFRL EP G I ID + +GL DLR K+SIIPQEP L
Sbjct: 1068 QEKVGIVGRTGAGKSSLISALFRLSEPEG-KIWIDKILTTEIGLHDLRKKMSIIPQEPVL 1126
Query: 1303 FRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362
F G++R NLDP ++D+E+W AL++ QLK TI LP K+D+ +++ G N+S GQRQL C
Sbjct: 1127 FTGTMRKNLDPFNEHTDEELWNALQEVQLKETIEDLPGKMDTELAESGSNFSVGQRQLVC 1186
Query: 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMV 1422
L R +L++N+IL++DEA A++D TD ++Q+ IR++F++CTV+T+AHR+ T+IDSD +MV
Sbjct: 1187 LARAILRKNQILIIDEATANVDPRTDELIQKKIREKFAHCTVLTIAHRLNTIIDSDKIMV 1246
Query: 1423 LSYGKLLEYDEPSKLMETNSS-FSKLVAE 1450
L G+L EYDEP L++ S F K+V +
Sbjct: 1247 LDSGRLKEYDEPYVLLQNKESLFYKMVQQ 1275
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8LGU1 | AB8C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.6666 | 0.9911 | 0.9931 | yes | no |
| P39109 | YCFI_YEAST | No assigned EC number | 0.3171 | 0.9686 | 0.9379 | yes | no |
| Q10185 | ABC2_SCHPO | 3, ., 6, ., 3, ., - | 0.3405 | 0.8425 | 0.8362 | yes | no |
| O35379 | MRP1_MOUSE | No assigned EC number | 0.3368 | 0.8527 | 0.8187 | yes | no |
| Q54JR2 | ABCC3_DICDI | No assigned EC number | 0.3484 | 0.8234 | 0.8555 | yes | no |
| Q63120 | MRP2_RAT | No assigned EC number | 0.3472 | 0.8452 | 0.8046 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00034196001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (1456 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00002277001 | SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (129 aa) | • | 0.481 | |||||||
 | GSVIVG00002276001 | SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (81 aa) | • | 0.481 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1467 | |||
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-150 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-120 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-106 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-90 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-87 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-76 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-75 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-74 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 6e-67 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-66 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-59 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-57 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 4e-55 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-53 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-51 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-50 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-50 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-49 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-49 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-48 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-48 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-47 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-46 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-44 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 8e-44 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 8e-44 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-43 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-43 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-42 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 8e-42 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-41 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-41 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-41 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-41 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-40 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-40 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-40 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-39 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-38 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-38 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 6e-38 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-37 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-37 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-37 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 8e-37 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 9e-37 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-36 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-36 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-36 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 6e-35 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-34 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 9e-33 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-32 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-32 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 7e-32 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-31 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-31 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-31 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-30 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-29 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-29 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 8e-29 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 9e-29 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-29 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-28 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-28 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-28 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-27 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-27 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-27 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-27 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 9e-27 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-26 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-26 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-26 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-26 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 6e-26 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-26 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-26 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-25 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-25 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-25 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-25 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-24 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-24 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-24 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-24 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 6e-24 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 9e-24 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-23 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-23 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-23 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-22 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-22 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-22 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-22 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-22 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-22 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-22 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-22 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 9e-22 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-21 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-21 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-21 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-21 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-21 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-21 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-21 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 5e-21 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 6e-21 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-21 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-20 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-20 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-20 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-20 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-20 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-20 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-20 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 8e-20 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 8e-20 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-19 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-19 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-19 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-19 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-19 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-19 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-19 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-19 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-19 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-19 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-19 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-18 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-18 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-18 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-18 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-18 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 5e-18 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 7e-18 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 7e-18 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-17 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-17 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-17 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-17 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-17 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-17 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 5e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-17 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-17 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-17 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 6e-17 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 7e-17 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-17 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 8e-17 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 8e-17 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 9e-17 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 9e-17 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 9e-17 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-16 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-16 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-16 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-16 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-16 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-16 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-16 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-16 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 5e-16 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-16 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-16 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 6e-16 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-16 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-16 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 7e-16 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 7e-16 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 9e-16 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 9e-16 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-15 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-15 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-15 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-15 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-15 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-15 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-15 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-15 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-15 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-15 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-15 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-15 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 5e-15 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-15 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-15 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 5e-15 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 7e-15 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 8e-15 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 9e-15 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 9e-15 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-14 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-14 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-14 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-14 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-14 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-14 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-14 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-14 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-14 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-14 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-14 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-14 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-14 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-14 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-14 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 6e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 6e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-14 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 6e-14 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 6e-14 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 6e-14 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-14 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-13 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-13 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-13 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-13 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-13 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-13 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-13 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-13 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-13 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-13 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-13 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-13 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-13 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-13 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-13 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-13 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-13 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-13 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-13 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-13 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 5e-13 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 5e-13 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 5e-13 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-12 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-12 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-12 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-12 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-12 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-12 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-12 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-12 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-12 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-12 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-12 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 3e-12 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 3e-12 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-12 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 4e-12 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-12 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-12 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-12 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 5e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-12 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 6e-12 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 8e-12 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 8e-12 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 8e-12 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 8e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 9e-12 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 9e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-11 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-11 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-11 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-11 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-11 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-11 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-11 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-11 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-11 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-11 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-11 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-11 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-11 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-11 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-11 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 3e-11 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-11 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-11 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-11 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-11 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-11 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-11 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-11 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-11 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 5e-11 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-11 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 5e-11 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 5e-11 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-11 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 7e-11 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 7e-11 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 7e-11 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 7e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 8e-11 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 8e-11 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-11 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 9e-11 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 9e-11 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 9e-11 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-10 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-10 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-10 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-10 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-10 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-10 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-10 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-10 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-10 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-10 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-10 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-10 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-10 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-10 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-10 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 3e-10 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-10 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-10 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-10 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-10 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-10 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-10 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 8e-10 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 9e-10 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-09 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-09 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-09 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-09 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-09 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-09 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-09 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-09 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-09 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-09 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-09 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-09 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-09 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-09 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-09 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-09 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-09 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 3e-09 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 3e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-09 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-09 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-09 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-09 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-09 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 4e-09 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 5e-09 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-09 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 5e-09 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 6e-09 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 6e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 7e-09 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 7e-09 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 7e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 8e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 8e-09 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-08 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-08 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-08 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-08 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 1e-08 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-08 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-08 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-08 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-08 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-08 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-08 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-08 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-08 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-08 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-08 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 5e-08 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-08 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-08 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 6e-08 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 6e-08 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 6e-08 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 6e-08 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-08 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 7e-08 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 7e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 8e-08 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 8e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 9e-08 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 9e-08 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-07 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-07 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 1e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-07 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-07 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-07 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-07 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-07 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-07 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-07 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-07 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-07 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-07 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 6e-07 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-07 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 7e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 8e-07 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 8e-07 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-06 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-06 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-06 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-06 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-06 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-06 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-06 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-06 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-06 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-06 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-06 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-06 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-06 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-06 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-06 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 5e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 6e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 6e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-06 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 7e-06 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 7e-06 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 8e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-05 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-05 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-05 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-05 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-05 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-05 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-05 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-05 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 3e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-05 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 4e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 4e-05 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-05 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 5e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 6e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 6e-05 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 7e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 7e-05 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 8e-05 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 9e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-05 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 9e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 9e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-04 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-04 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-04 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 1e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-04 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-04 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 3e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-04 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 4e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 4e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-04 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-04 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 6e-04 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 7e-04 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 9e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.001 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.001 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 0.001 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 0.001 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.002 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.002 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 0.002 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.002 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 0.002 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 0.002 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 0.002 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.002 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 0.003 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.003 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 0.004 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.004 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.004 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 0.004 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 812 bits (2099), Expect = 0.0
Identities = 492/1516 (32%), Positives = 785/1516 (51%), Gaps = 123/1516 (8%)
Query: 13 WTCEGEFDLGSF--C-IQSTIIDVINLV--FFCVFYLSLLVGSFR-KNHNYGRIRRECVS 66
W + + G++ C S +I++ +LV C++ + L+ + +
Sbjct: 18 WAKKVDNAFGAYTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFL 77
Query: 67 IVVSACCAVVGIAYLGYCLWNLIAKNDSSMS--WLVS-TVRGLIWVSLAISLLVKRSKWI 123
+++A C + L + L +S+ +VS V L W S+ + + V+ +I
Sbjct: 78 ALLAAYCTAEPLFRLVMGISVLNLDGQTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYI 137
Query: 124 RMLITLWWMSFSLLVL------ALNIEILARTY---TINVVYILPLPVNLL---LLFSAF 171
R W++ F+++ + LN+ + + Y + +YI + +L LL F
Sbjct: 138 REFR--WYVRFAVIYVLVGDAVMLNLVLSVKEYYSSFVLYLYISEVAAQVLFGILLLVYF 195
Query: 172 RNFSHFT--SPNREDKSLS---EPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPL 226
N + +P + E L + A + ++ F W+ PL+ LGY +PL
Sbjct: 196 PNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPL 255
Query: 227 ALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIA-IC 285
+D+ L D+ Y+ F WD E L+R + N L ++
Sbjct: 256 TEKDVWKLDTWDQTETLYRSFQKCWD----EELKKPKPWLLRAL--NNSLGGRFWLGGFF 309
Query: 286 ALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLS-----IVGCLIITKVVESFTQRHCFF 340
+ ++ VGPLLL N E++Q G I I VV +F
Sbjct: 310 KIGNDLSQFVGPLLL-------NLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQYF 362
Query: 341 GS-RRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTW 399
+ R G R+RS L+ AV++K L+L+ GRKK ++G+I N + DA + + H W
Sbjct: 363 QNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHTLW 422
Query: 400 SLALQLFLAIGVLFGVVGLGALPG-LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRS 458
S ++ +A+ +L+ +G+ +L G L+L L+ + +K +QK E + D+R+
Sbjct: 423 SAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISK-MQKLTKEGLQRTDKRIGL 481
Query: 459 TSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVI 518
+E+L M +K +WE F+S +++ R+ E W +AQL A+ + I P +++ V
Sbjct: 482 MNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVS 541
Query: 519 F-----LGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573
F LG LT P A T ++ A LR P+ M+P ++ + VS R+ L
Sbjct: 542 FGVFTLLGGDLT---PARAFTSLSLFAVLRF---PLFMLPNLITQAVNANVSLKRLEELL 595
Query: 574 LDHELNNDDVRRI-----SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAV 628
L E R+ L+ ++ I+ G FSWD + PTL +NLD+ +A+
Sbjct: 596 LAEE-------RVLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAI 648
Query: 629 CGSVGAGKSSLLYAILGEIPKIS-GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKA 687
GS G GK+SL+ A+LGE+P S +V + G++AYV Q SWI + ++RDNIL+G P D
Sbjct: 649 VGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPE 708
Query: 688 RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF 747
RY++AI AL D++ GDLTEIG+RG+N+SGGQKQR+ +ARAVY+++D+Y+FDDP
Sbjct: 709 RYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPL 768
Query: 748 SAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807
SA+DAH +F++C+ L KT +LVT+Q+ FLS+VDRI+++ G I + G Y+EL
Sbjct: 769 SALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828
Query: 808 AGTAFEQLV-NAHRDAITGLGPLDNAGQGGAEKVEKGRTARP---EEPNGIYPRKESSEG 863
G F++L+ NA G ++ + E+ + +++P N + +K+SS
Sbjct: 829 NGPLFQKLMENA--------GKMEEYVEENGEEEDDQTSSKPVANGNANNL--KKDSSSK 878
Query: 864 EISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKG----MSLLCLGVLAQSGFVGLQAAA 919
+ S +G + L + EE E G V WK Y N G M L VL + + ++
Sbjct: 879 KKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEV----FRVSS 934
Query: 920 TYWLAYAIQ--IPKITS-GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTN 976
+ WL+ PK +YA +S + S++ L A+K
Sbjct: 935 STWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLG 994
Query: 977 SIFKAPMLFFDSTPVGRILTRLSSDLSILDFDI-PFSIVFVAASGTELL---AIIGIM-T 1031
SI +APM FF + P+GRI+ R + DL +D ++ F +F+ +LL +IGI+ T
Sbjct: 995 SILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLG-QIFQLLSTFVLIGIVST 1053
Query: 1032 FVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFN 1091
W ++ + + A YY +TARE+ R++ T++PV E G+ TIRA+
Sbjct: 1054 ISLWAIMPLLVLFYGAYL----YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 1109
Query: 1092 MVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVL-----IPRG 1146
DR + + +D + WL +R+E L L ++ A F V+ +
Sbjct: 1110 AYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQA 1169
Query: 1147 YVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRP 1206
A +GL LSYA +T + R N + +VER+ ++ +P E P ++E+ RP
Sbjct: 1170 AFAS-TMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRP 1228
Query: 1207 PSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL 1266
P WP G I+ + +RYRP P VL G++ S +VG+VGRTG+GK+++++ALFR+
Sbjct: 1229 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRI 1288
Query: 1267 VEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKAL 1326
VE G ILIDG DI GL DLR L IIPQ P LF G+VR NLDP ++D ++W++L
Sbjct: 1289 VELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESL 1348
Query: 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
E+ LK I LD+ VS+ GEN+S GQRQL L R LL+R++ILVLDEA A++D
Sbjct: 1349 ERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVR 1408
Query: 1387 TDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKL-METNSSFS 1445
TDA++Q+ IR+EF +CT++ +AHR+ T+ID D ++VL G+++E+D P L S+FS
Sbjct: 1409 TDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFS 1468
Query: 1446 KLV-------AEYWSS 1454
K+V A+Y S
Sbjct: 1469 KMVQSTGAANAQYLRS 1484
|
Length = 1622 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 799 bits (2064), Expect = 0.0
Identities = 478/1457 (32%), Positives = 759/1457 (52%), Gaps = 107/1457 (7%)
Query: 75 VVGIAYLGYCLWNLIAKNDSSMSWLVS-TVRGLIWVSLAISLLVKRSKWIR---MLITLW 130
+V A L Y W + +LVS T+ G+ + + ++R K ++ +++T W
Sbjct: 77 IVCWADLFYSFWERSHGRAPAPVFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFW 136
Query: 131 WMSF--------SLLVLALNIEILARTYTINVVYILPLPVNLLLLFSAFRNFSHFTSPNR 182
++ S ++LAL + + + YI V L+ S F + S S
Sbjct: 137 LVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALVLSQLVLSCFSDKSPLFSETN 196
Query: 183 EDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASF 242
D N A L ++TF WI + GY +PL D+ SL ED +
Sbjct: 197 HDP----------NPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEM 246
Query: 243 AYQKFAYAW-------------------DSLVRENNSNNNGN------LVR--------- 268
W D + +S + N +V+
Sbjct: 247 VVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPS 306
Query: 269 --KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLII 326
KV+ + + + + + +GP +L + + N +G G L +
Sbjct: 307 LFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFV 366
Query: 327 TKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAY 386
+++ F SGMR+++A+M AVY+K L +++ RK + GEIVN ++VDA
Sbjct: 367 CACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQ 426
Query: 387 RMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQS 446
R + + ++ WS LQ+ LA+ L+ +G L G+ + ++ LN A + Q
Sbjct: 427 RFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQV 486
Query: 447 EFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVI 506
M ++D R++ +EILN +K++KL +WE F +E R++E K L ++ A GT
Sbjct: 487 AHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFT 546
Query: 507 YWMSPTIISSVIF-LGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVS 565
+ +P +++ + F + + + L+A F LA + P+ ++P +S ++Q VS
Sbjct: 547 WVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVS 606
Query: 566 FDRINAFLLDHELNNDDVRRISLQKSD-RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQ 624
R+ FL EL D + R +++ + S+ + F+W +L PTL G+ I
Sbjct: 607 LKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLP-PTLNGITFSIPEGA 665
Query: 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPM 684
+AV G VG GKSSLL A+L E+ K+ G V++ GS+AYV Q +WIQ+ S+R+NIL+GK +
Sbjct: 666 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKAL 725
Query: 685 DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
++ Y + ++ACAL D+ GD TEIG++G+NLSGGQKQR+ LARAVY++ADIYLFD
Sbjct: 726 NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD 785
Query: 745 DPFSAVDAHTAATLFNECV--MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802
DP SAVDAH +F + L+ KT ILVTH + +L +VD I+V+ GG+I++ G+Y
Sbjct: 786 DPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSY 845
Query: 803 QELLLAGTAFEQLVNAHRDAITGLGPLDN--AGQGGAEK----VEKG------------- 843
QELL AF + + + D+ A G K +E G
Sbjct: 846 QELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQR 905
Query: 844 RTARPEEPNGIYPRKESSEGEISVKGLTQ----LTEDEEMEIGDVGWKPFMDYLNVSKGM 899
+ + +G R S E+ + L E ++ + G V + DY+
Sbjct: 906 QLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIG-- 963
Query: 900 SLLCLGVLAQSGFVGLQAAA---TYWLAYAIQIPKITS-----GILIGVYA--GVSTASA 949
L + L+ FV +A YWL+ P + + + VY G+ A
Sbjct: 964 --LFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFA 1021
Query: 950 VFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDI 1009
VF Y S + G++AS+ ++ ++PM FF+ TP G ++ R S +L +D I
Sbjct: 1022 VFGY--SMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMI 1079
Query: 1010 PFSI-VFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGT 1068
P I +F+ + + A+I I+ +++ ++ FVQR+Y+A++R+L R+
Sbjct: 1080 PPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYF-FVQRFYVASSRQLKRLESV 1138
Query: 1069 TKAPVMNYTAETSQGVVTIRAFNMVDRF-FQNYLKLVDIDASLFFHTNGVMEWLILRVEA 1127
+++PV ++ ET GV IRAF +RF Q+ LK VD + ++ + WL +R+E
Sbjct: 1139 SRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLK-VDENQKAYYPSIVANRWLAVRLEC 1197
Query: 1128 LQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERI 1187
+ N + AALF V I R ++ GLVGLS+SY+ +T +L R + I++VER+
Sbjct: 1198 VGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERL 1256
Query: 1188 KQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVG 1247
K++ E P +++ PPS WP +GR+E R +RYR + LVL+ I T G +VG
Sbjct: 1257 KEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVG 1316
Query: 1248 VVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSV 1307
+VGRTG+GK++L LFR+ E A G I+IDG++I +GL DLR K++IIPQ+P LF GS+
Sbjct: 1317 IVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSL 1376
Query: 1308 RTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367
R NLDP YSD+E+W ALE LKT +S+LP+KLD ++ GEN S GQRQL CL R L
Sbjct: 1377 RMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARAL 1436
Query: 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGK 1427
L++ +ILVLDEA A++D TD ++Q IR +F +CTV+T+AHR+ T++D V+VL G+
Sbjct: 1437 LRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGE 1496
Query: 1428 LLEYDEPSKLMETNSSF 1444
+ E+ PS L++ F
Sbjct: 1497 VAEFGAPSNLLQQRGIF 1513
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 737 bits (1905), Expect = 0.0
Identities = 466/1497 (31%), Positives = 763/1497 (50%), Gaps = 111/1497 (7%)
Query: 14 TCEGEFDLGSFC-IQSTIIDVINLVFF--CVFYLSLLVGSFRKNHNYGRIRRECVSIVVS 70
T +G F + C I S ++ V + V C + + +++ + + R + + +
Sbjct: 21 TVDGAFGAYTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGIL 80
Query: 71 ACCAVVGIAY---LGYCLWNLIAKNDSSMSWLVS-TVRGLIWVSLAISLLVKRSKWIRML 126
AC VV +G L+++ + D + S V W S+ + + ++ ++++
Sbjct: 81 ACYCVVEPVLRLVMGISLFDMDEETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYVKEF 140
Query: 127 ITLWWMSFSLLVLALNIEILARTYTINVVYILPLPVN--LLLLFSAFRNFS--------- 175
W++ F ++ + ++A +++V L +N L L + R
Sbjct: 141 --RWYVRFGVVYV-----LVADAVLLDLVLPLKNSINRTALYLCISSRCCQALFGILLLV 193
Query: 176 -----------HFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSK 224
H + D + L +N A + ++ FSW+ PL+ LGY K
Sbjct: 194 YIPELDPYPGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRK 253
Query: 225 PLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIA- 283
P+ +D+ L D+ ++F W E + L+R + N L ++
Sbjct: 254 PITEKDVWQLDQWDQTETLIKRFQRCW----TEESRRPKPWLLRAL--NNSLGGRFWLGG 307
Query: 284 ICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSR 343
I + ++ VGP++L + G+ G + + F
Sbjct: 308 IFKIGHDLSQFVGPVILSHLLQSMQEGDPAWV-GYVYAFLIFFGVTFGVLCESQYFQNVG 366
Query: 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLAL 403
R G R+RS L+ A++ K L+L+ RK ++G++ N I DA + + H WS
Sbjct: 367 RVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPF 426
Query: 404 QLFLAIGVLFGVVGLGALPG-LVLFLICGLLNVPFAKIL----QKCQSEFMIAQDERLRS 458
++ +++ +L+ +G+ +L G L+LFL+ +P ++ +K E + D+R+
Sbjct: 427 RIIVSMVLLYQQLGVASLFGSLILFLL-----IPLQTLIVRKMRKLTKEGLQWTDKRVGI 481
Query: 459 TSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVI 518
+EIL +M +K +WE+ F+S I+ R +E W +AQL A+ + I P +++ V
Sbjct: 482 INEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVS 541
Query: 519 F-----LGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573
F LG LT P A T ++ A LRS P+ M+P LS ++ VS RI L
Sbjct: 542 FGVFVLLGGDLT---PARAFTSLSLFAVLRS---PLNMLPNLLSQVVNANVSLQRIEELL 595
Query: 574 LDHELNNDDVRRI-----SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAV 628
L E RI LQ ++ I+ G FSWD + + PTL +NL+I +A+
Sbjct: 596 LSEE-------RILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAI 648
Query: 629 CGSVGAGKSSLLYAILGEIPKISGT-VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKA 687
G G GK+SL+ A+LGE+ + V + GS+AYV Q SWI + ++R+NIL+G +
Sbjct: 649 VGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESE 708
Query: 688 RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF 747
RY +AI AL D++ DLTEIG+RG+N+SGGQKQR+ +ARAVY+++DIY+FDDP
Sbjct: 709 RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL 768
Query: 748 SAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807
SA+DAH A +F+ C+ L+ KT +LVT+Q+ FL +DRI+++ G I + G + EL
Sbjct: 769 SALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828
Query: 808 AGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEE--PNGIYPRKESSEGEI 865
+G+ F++L ++NAG+ A + + P E + G
Sbjct: 829 SGSLFKKL-------------MENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGST 875
Query: 866 --SVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWL 923
+G + L + EE E G + W M Y G+ ++ + ++ L+ +++ WL
Sbjct: 876 KQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWL 935
Query: 924 AYAIQIPKITS---GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFK 980
+ S G I VYA + + SF+ L A+K NSI +
Sbjct: 936 SIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILR 995
Query: 981 APMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELL---AIIGIMTFVT-WQ 1036
APMLFF + P GR++ R S D+ +D ++ + +LL A+IG ++ ++ W
Sbjct: 996 APMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWA 1055
Query: 1037 VLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096
++ + I A YY +T+RE+ R++ T++P+ E G+ +IRA+ DR
Sbjct: 1056 IMPLLILFYAAYL----YYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRM 1111
Query: 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVL----IPRGYVAPGL 1152
+ K +D + WL +R+E L + ++ A F VL
Sbjct: 1112 AKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFAST 1171
Query: 1153 VGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPF 1212
+GL LSY +T + R N + SVER+ ++ +P E AI+E+ RP S WP
Sbjct: 1172 MGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPS 1231
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
+G I+ + +RYRP P VL G++ S +VGVVGRTG+GK+++++ALFR+VE G
Sbjct: 1232 RGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKG 1291
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLK 1332
I+ID D+ GL DLR LSIIPQ P LF G+VR N+DP ++D ++W+ALE+ +K
Sbjct: 1292 RIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIK 1351
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQ 1392
I P LD+ VS+ GEN+S GQRQL L R LL+R++ILVLDEA AS+D TD+++Q
Sbjct: 1352 DVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQ 1411
Query: 1393 RIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETN-SSFSKLV 1448
R IR+EF +CT++ +AHR+ T+ID D ++VLS G++LEYD P +L+ + S+F ++V
Sbjct: 1412 RTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMV 1468
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 496 bits (1278), Expect = e-150
Identities = 285/876 (32%), Positives = 435/876 (49%), Gaps = 48/876 (5%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
LR V++ + + V G+ G+GKS+LL ++L + G V SIAYV Q +WI +
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNA 735
Query: 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
++R NIL+ D AR A++ L+ D+ G TEIG++G+NLSGGQK R+ LAR
Sbjct: 736 TVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLAR 795
Query: 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792
AVY + D+YL DDP SA+DAH + EC + AL KT +L THQV + D ++ L
Sbjct: 796 AVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALG 855
Query: 793 GGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPN 852
G++ SG+ + + + + L ++ +A + G EP
Sbjct: 856 DGRVEFSGSSAD-FMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVD--HEPP 912
Query: 853 GIYPRKESSEGEISVKGLT--QLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQS 910
+ G+ + +L EE G V W ++ YL G+ VLA
Sbjct: 913 VAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGL-HAAGFVLATF 971
Query: 911 GFVGL-QAAATYWLA-YAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASK 968
L ++ WL+ ++ + K+++ + VY G+ V R F + + S+
Sbjct: 972 AVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSR 1031
Query: 969 AFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIG 1028
S+ + M FFD+TP+GRIL R S D+ ILD +P S +++ + + I
Sbjct: 1032 NMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSIL 1091
Query: 1029 IMTFVTWQVLVVAIFAMVAVRFV----QRYYIATARELIRINGTTKAPVMNYTAETSQGV 1084
+ + Q V + A+V ++ ++Y + RE+ RI K+PV E QG
Sbjct: 1092 VTSAS--QPFV--LVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGS 1147
Query: 1085 VTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV--- 1141
TI A+ Q L+ +D+ S + N WL +RVE L N+ + AL V
Sbjct: 1148 ATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGT 1207
Query: 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH-IP----PE 1196
++ GLV LSL+ A T T +L R + + SVER+ + +P PE
Sbjct: 1208 MLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPE 1267
Query: 1197 PPAIV-------------------EDKRPPSSWPF---KGRIELRQLKIRYRPNAPLVLK 1234
V E P S+ P G + +++RYR PLVL+
Sbjct: 1268 LDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLR 1327
Query: 1235 GITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294
G++ + +VG+VGRTGSGK+TL+ R+VE GG I ++G +I + GL++LR + S
Sbjct: 1328 GVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387
Query: 1295 IIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWS 1354
+IPQ+P LF G+VR N+DP S E+W ALE L+ ++S +DS V + G N+S
Sbjct: 1388 MIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYS 1447
Query: 1355 AGQRQLFCLGRVLLKRNRILVL-DEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPT 1413
GQRQL C+ R LLK+ +L DEA A+ID A D +Q + FS TVIT+AHR+ T
Sbjct: 1448 VGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHT 1507
Query: 1414 VIDSDMVMVLSYGKLLEYDEPSKL-METNSSFSKLV 1448
V D ++V+ +G + E P +L M S F +V
Sbjct: 1508 VAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543
|
Length = 1560 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 375 bits (965), Expect = e-120
Identities = 127/221 (57%), Positives = 172/221 (77%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
G IE + + +RYRPN P VLK I+ + G +VG+VGRTGSGK++L+ ALFRLVE + GS
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKT 1333
ILIDGVDI +GL DLR ++SIIPQ+P LF G++R+NLDP G YSD+E+W+ALE+ LK
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1334 TISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQR 1393
+ SLP LD+ V + GEN S GQRQL CL R LL++++ILVLDEA AS+D TDA++Q+
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1394 IIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEP 1434
IR+ F +CTV+T+AHR+ T+IDSD ++VL G+++E+D P
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 335 bits (863), Expect = e-106
Identities = 112/204 (54%), Positives = 153/204 (75%), Gaps = 3/204 (1%)
Query: 595 VKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652
+ +++ +F+WD TL+ +NL++ + +A+ G VG+GKSSLL A+LGE+ K+SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 653 TVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+V++ GSIAYVSQ WIQ+G+IR+NIL+GKP D+ RY+K IKACAL+ D+ GDLTE
Sbjct: 61 SVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTE 120
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKT 771
IG++G+NLSGGQKQRI LARAVY+DADIYL DDP SAVDAH +F C++ L KT
Sbjct: 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT 180
Query: 772 VILVTHQVEFLSEVDRILVLEGGQ 795
ILVTHQ++ L D+I+VL+ G+
Sbjct: 181 RILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 305 bits (783), Expect = 2e-90
Identities = 140/553 (25%), Positives = 252/553 (45%), Gaps = 13/553 (2%)
Query: 904 LGVLAQSGFVGLQAAATYWLAYAIQIPKITSGI---LIGVYAGVSTASAVFVYFRSFFAA 960
L +L L + I G L+ + ++ V +S+ +
Sbjct: 18 LAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGS 77
Query: 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020
LG K + + P+ FFD G +++RL++D+ + + +V V S
Sbjct: 78 RLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSI 137
Query: 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAET 1080
L+ + ++ ++W++ ++ + + + V +R+L R + E+
Sbjct: 138 LLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLES 197
Query: 1081 SQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF- 1139
G+ I+AF DR + + + + + + L + L +L
Sbjct: 198 LSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALG 257
Query: 1140 LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199
L+ G + G + + Y L + L L + ER+ + + PE
Sbjct: 258 GFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPE--- 314
Query: 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259
VED P G IE + Y P VLK I+ + G +V +VG +GSGK+TL
Sbjct: 315 -VED-PPDPLKDTIGSIEFENVSFSYPGKKP-VLKDISFSIEPGEKVAIVGPSGSGKSTL 371
Query: 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL--Y 1317
I L RL +P G ILIDG+DI + L LR ++ I+ Q+P LF G++R N+ LG
Sbjct: 372 IKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIA-LGRPDA 430
Query: 1318 SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLD 1377
+D+EI +AL+ I++LP+ D+ V + G N S GQRQ + R LL+ IL+LD
Sbjct: 431 TDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILD 490
Query: 1378 EANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKL 1437
EA +++D+ T+A++Q +++ T + +AHR+ T+ ++D ++VL G+++E +L
Sbjct: 491 EATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEEL 550
Query: 1438 METNSSFSKLVAE 1450
+ +++L
Sbjct: 551 LAKGGLYARLYQA 563
|
Length = 567 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 283 bits (725), Expect = 2e-87
Identities = 116/225 (51%), Positives = 155/225 (68%), Gaps = 18/225 (8%)
Query: 1210 WPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP 1269
WP G IE+ L +RY P+ P VLK ++ G ++G+VGRTG+GK+TLI ALFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKC 1329
G I IDG+DI ++ L+DLR L+IIPQ+PTLF G++R+NLDP YSD+EI+ AL
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGAL--- 117
Query: 1330 QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA 1389
VS+ G N S GQRQL CL R LLKR R+LVLDEA ASID ATDA
Sbjct: 118 ---------------RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 1390 ILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEP 1434
++Q+ IR+EF+N T++T+AHR+ T+ID D ++V+ G++ EYD P
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 278 bits (712), Expect = 5e-76
Identities = 199/673 (29%), Positives = 310/673 (46%), Gaps = 59/673 (8%)
Query: 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVR 256
++ + KA L KL F W P+L GY + L L DI + D A ++ WD R
Sbjct: 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWD---R 59
Query: 257 E-NNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLL---YAFVNYSNRGEE 312
E ++ N L+ + + +F I V PLLL A + N E
Sbjct: 60 ELASAKKNPKLLN-ALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPER 118
Query: 313 NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKH 372
+ L++ CL+ +V + FG GM+MR AL +Y+K LKLSS K
Sbjct: 119 EIAYYLALGLCLLF--IVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKI 176
Query: 373 STGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGL 432
STG++V+ ++ + + E H W LQ+ L +G+++ ++ + GL ++ L
Sbjct: 177 STGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLAL 236
Query: 433 LNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKW 492
+ + + + ERL TSEI+ N++ +K WEE + +I++ R+ E K
Sbjct: 237 FQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKL 296
Query: 493 LSEAQLRKAYGTVIYWMSP-----------------------TIISSVIFLGCALTGSAP 529
+ + + + ++ S T IS I L +T P
Sbjct: 297 TRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKGIILRRIFTTISYCIVLRMTVTRQFP 356
Query: 530 LNASTIFTVLATLRSM-----GEPVRMIPEALS----IMIQVKVSFDRINAFLLDHELNN 580
T + L + + E + + L+ M+ V S+D L + N
Sbjct: 357 GAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQN 416
Query: 581 DDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL 640
+ R+ D + NFS P L+ ++ ++ Q +AV GS G+GKSSLL
Sbjct: 417 NKARKQP--NGDDGLFFS--NFSL---YVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLL 469
Query: 641 YAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700
I+GE+ G + G I++ QTSWI G+I+DNI++G D+ RY IKAC L++
Sbjct: 470 MMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEE 529
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
DI F D T +G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF+ +D T +F
Sbjct: 530 DIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFE 589
Query: 761 ECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQEL----------LLAGT 810
C+ + KT ILVT ++E L + D+IL+L G G + EL LL
Sbjct: 590 SCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLE 649
Query: 811 AFEQLVNAHRDAI 823
AF+ R++I
Sbjct: 650 AFDNFSAERRNSI 662
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 276 bits (706), Expect = 3e-75
Identities = 174/655 (26%), Positives = 315/655 (48%), Gaps = 52/655 (7%)
Query: 854 IYPRKESSEG------EISVKGLTQLTEDEEMEIGDV-GWKPFMDYLNVSKGMS---LLC 903
IY R+ S + EI+ + L + DE + + W ++ Y+ ++ + + C
Sbjct: 814 IYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFC 873
Query: 904 LGVLA---QSGFVGL-----------------QAAATYWLAYAIQIPKITSGILIGVYAG 943
L + + +GL A++ + + I ++ + +Y G
Sbjct: 874 LVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVG 933
Query: 944 VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLS 1003
+ + +FR H L SK +S+ +APM ++ GRIL R + D++
Sbjct: 934 TADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMA 993
Query: 1004 ILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELI 1063
I+D +P ++ +L I +++ + + + AI V ++ Y++ T+++L
Sbjct: 994 IIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLK 1053
Query: 1064 RINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLIL 1123
++ ++P+ ++ + +G+ TIRAF F + K +++ + +F + W +
Sbjct: 1054 QLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQM 1113
Query: 1124 RVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIIS 1183
R++ + F A F+ + G VG+ L+ A + T + + + S
Sbjct: 1114 RIDIIFVF-FFIAVTFIAIGTNQ-DGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRS 1171
Query: 1184 VERIKQFMHIPPEPPA--------------IVEDKRPPSSWPFKGRIELRQLKIRYRPNA 1229
V R+ +F+ +P E P ++E+ WP G+++++ L +Y
Sbjct: 1172 VSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAG 1231
Query: 1230 PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL 1289
VL+ ++ + G RVG++GRTGSGK+TL+SAL RL+ G I IDGV S+ L+
Sbjct: 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290
Query: 1290 RVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDE 1349
R +IPQ+ +F G+ R NLDP +SD+EIWK E+ LK+ I P+KLD + D
Sbjct: 1291 RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350
Query: 1350 GENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAH 1409
G S G +QL CL R +L + +IL+LDE +A +D T I+++ ++Q FSNCTVI H
Sbjct: 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEH 1410
Query: 1410 RVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV-----AEYWSSCRRNS 1459
RV +++ +V+ + +YD KL+ S F + + + + RRNS
Sbjct: 1411 RVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRLKLFPLHRRNS 1465
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 247 bits (631), Expect = 4e-74
Identities = 115/236 (48%), Positives = 163/236 (69%), Gaps = 1/236 (0%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
G I++ L +RY N VLK + G +VG+ GRTGSGK++L A FR+V+ G
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKT 1333
I+IDG+DI + L LR +LSII Q+P LF GS+R NLDP +DD +W+ALE QLK
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1334 TISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQR 1393
+ SLP LD+ V++ GEN+S GQRQLFCL R ++++ IL++DEA ASID AT+ ILQ+
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1394 IIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM-ETNSSFSKLV 1448
++ F++ TV+T+AHRV T++D+D+V+VLS G L+E D P L+ + + F+ LV
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 237 bits (606), Expect = 6e-67
Identities = 137/570 (24%), Positives = 267/570 (46%), Gaps = 24/570 (4%)
Query: 265 NLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCL 324
+L+R+++ + K + + LL + ++ PLL+ ++ L E L ++ L
Sbjct: 2 SLLRRLLKYLKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLL 61
Query: 325 IITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVD 384
+ V Q + R G ++ + L +++K L+L K +G++++ + D
Sbjct: 62 ALLGGVLRALQ---SYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTND 118
Query: 385 AYRMGE-FPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQK 443
+ L ++ L L ++ +LF + AL L++ + L+ A+ +K
Sbjct: 119 VEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRK 178
Query: 444 CQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFK-WLSEAQLRKAY 502
A E E L+ +++IK E++ E E+ + L ++L
Sbjct: 179 LSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALL 238
Query: 503 GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQV 562
++ +S V+ LG L S L + + L + P+ + E +S++ +
Sbjct: 239 APLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRA 298
Query: 563 KVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKW 622
+ +R+ LLD E +D L+ + S++ + +FS+ + P L+ ++ I+
Sbjct: 299 SAAAERLFE-LLDEEPEVED-PPDPLKDTIGSIEFENVSFSYPGK--KPVLKDISFSIEP 354
Query: 623 AQKIAVCGSVGAGKSSLLYAILGEIPKISGTV-------------NLYGSIAYVSQTSWI 669
+K+A+ G G+GKS+L+ +L SG + +L I VSQ +
Sbjct: 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414
Query: 670 QSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728
SG+IR+NI G+P ++A+K + I N G T +G+RG+NLSGGQ+QR+
Sbjct: 415 FSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRL 474
Query: 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRI 788
+ARA+ + I + D+ SA+D T A + + + L+ +T +++ H++ + DRI
Sbjct: 475 AIARALLRNPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLSTIKNADRI 533
Query: 789 LVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
+VL+ G+I + G ++ELL G + +L A
Sbjct: 534 IVLDNGRIVERGTHEELLAKGGLYARLYQA 563
|
Length = 567 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 238 bits (609), Expect = 4e-66
Identities = 141/528 (26%), Positives = 249/528 (47%), Gaps = 48/528 (9%)
Query: 948 SAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDF 1007
A+ R++ AHLG + F + + P+ +F+ VG I++R+ I +F
Sbjct: 207 EALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVRELEQIREF 266
Query: 1008 ----------DIPFSIVFVAASGTELLAIIGIMTF-VTWQVLVVAIFAMVAVRFVQRYYI 1056
D+ F+++F LA++ + ++ +T VL ++ Q
Sbjct: 267 LTGSILTLIIDLLFALIF--------LAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLR 318
Query: 1057 ATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFF---H 1113
R+LI + ++ + ET +G+ T++A RF + + ++ F
Sbjct: 319 RKTRKLIEESAEQQS----FLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEK 374
Query: 1114 TNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPG-------LVGLSLSYAFTLTGT 1166
++ + ++ L ++ + LVL G + G L G +S L+
Sbjct: 375 LALILNTIKSLLQQLSSVLILWFGAILVL--EGELTLGQLVAFNMLAGYFISPITRLSQ- 431
Query: 1167 QVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYR 1226
+ + +++ER+ + PPE DK +G IE + RY
Sbjct: 432 --LWTDF----QQAKVALERLGDILDTPPEQE---GDKTLIHLPKLQGEIEFENVSFRYG 482
Query: 1227 PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL 1286
P+ P VL+ ++ G +V +VGR+GSGK+TL+ L L +P G IL+DGVD+ + L
Sbjct: 483 PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDL 542
Query: 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPLGL--YSDDEIWKALEKCQLKTTISSLPNKLDS 1344
LR ++ + Q+P LF GS+R N+ LG +D+EI +A + I +LP D+
Sbjct: 543 ASLRRQVGYVLQDPFLFSGSIRENIA-LGNPEATDEEIIEAAQLAGAHEFIENLPMGYDT 601
Query: 1345 SVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTV 1404
V + G N S GQRQ L R LL + +IL+LDEA +++D T+AI+ + + Q TV
Sbjct: 602 PVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTV 661
Query: 1405 ITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYW 1452
I +AHR+ T+ +D ++VL GK++E +L+ +++L +
Sbjct: 662 IIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 203 bits (520), Expect = 1e-59
Identities = 80/229 (34%), Positives = 124/229 (54%), Gaps = 2/229 (0%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
G IE + Y P VLK I + G V +VG TG+GKTTLI+ L R +P G
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK-CQLK 1332
ILIDG+DI + K LR + ++ Q+ LF G++ N+ + DE K
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQ 1392
I LPN D+ + + G N S G+RQL + R +L+ +IL+LDEA ++ID+ T+ ++Q
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 1393 RIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETN 1441
+ + T I +AHR+ T+ ++D ++VL GK++E +L+
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 2e-57
Identities = 94/232 (40%), Positives = 134/232 (57%), Gaps = 10/232 (4%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA 661
FS + P L+ +NL I+ + +A+ GS G+GK+SLL ILGE+ G + G I+
Sbjct: 42 FSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRIS 101
Query: 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721
+ SQ SWI G+I++NI++G D+ RY +KAC L++DI F D T +G+ G+ LS
Sbjct: 102 FSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLS 161
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781
GGQ+ RI LARAVY DAD+YL D PF +D T +F CV + KT ILVT ++E
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEH 221
Query: 782 LSEVDRILVLEGGQITQSGNYQEL----------LLAGTAFEQLVNAHRDAI 823
L + D+IL+L G G + EL L+ F+Q R++I
Sbjct: 222 LKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFSAERRNSI 273
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 193 bits (491), Expect = 4e-55
Identities = 91/236 (38%), Positives = 143/236 (60%), Gaps = 1/236 (0%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
G++ ++ L +Y VL+ I+ + S G RVG++GRTGSGK+TL+SA RL+ G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKT 1333
I IDGV S+ L+ R +IPQ+ +F G+ R NLDP G +SD+EIWK E+ LK+
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1334 TISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQR 1393
I P +LD + D G S G +QL CL R +L + +IL+LDE +A +D T ++++
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1394 IIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449
++Q F++CTVI HR+ +++ +V+ K+ +YD KL+ S F + ++
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAIS 235
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 185 bits (470), Expect = 5e-53
Identities = 87/219 (39%), Positives = 128/219 (58%), Gaps = 21/219 (9%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
V++ G FSW L TL +N+ I Q + G VG GKSSLL AILGE+ + G V
Sbjct: 1 VQVTNGYFSWGSGL--ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 655 NL-----------------YGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACA 697
+ S+AY +Q W+ + ++ +NI +G P +K RY AC+
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS 118
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
L DI+ GD TEIG+RG+NLSGGQ+QRI +ARA+Y + +I DDPFSA+D H +
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 758 LFNECVMAAL--EKKTVILVTHQVEFLSEVDRILVLEGG 794
L E ++ L +K+T++LVTH++++L D I+ ++ G
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 177 bits (453), Expect = 3e-51
Identities = 70/212 (33%), Positives = 107/212 (50%), Gaps = 41/212 (19%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + + Y VLK ++ T G +V +VG +GSGK+TL+ L RL +P G IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTI 1335
IDGVD+ + L+ LR ++ +PQ+P LF G++R N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 1336 SSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRII 1395
S GQRQ + R LL+ IL+LDEA +++D T+A++ +
Sbjct: 97 -----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 1396 RQEFSNCTVITVAHRVPTVIDSDMVMVLSYGK 1427
R TVI +AHR+ T+ D+D ++VL G+
Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 1e-50
Identities = 137/572 (23%), Positives = 246/572 (43%), Gaps = 56/572 (9%)
Query: 279 NIFIAICALLRTIAVVVGPLLLYAFVNY--SNRGEENLQEGLSIVGCLIITKVVESFTQR 336
+ +A +LL + + PL ++ + L + + + + +
Sbjct: 158 EVLLA--SLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRT 215
Query: 337 HCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEF----P 392
+ G R+ L ++ L+L +K S GEI++ R+ E
Sbjct: 216 YLIA---HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIIS-------RVRELEQIRE 265
Query: 393 FWFHLTWSLALQLFLAIGVLFGVVGLG---------ALPGLVLFLICGLLNVPFAKILQK 443
F LT L L + + LF ++ L L L + L+ + F +L++
Sbjct: 266 F---LT-GSILTLIIDL--LFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRR 319
Query: 444 CQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG 503
+ + E+ E + ++ +K + E +F+S ++R K+ + K
Sbjct: 320 KTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNI--GFKTEKLAL 377
Query: 504 TVIYWMSP-TIISSVI--FLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMI 560
+ S +SSV+ + G L L + P+ + + +
Sbjct: 378 ILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQ 437
Query: 561 QVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620
Q KV+ +R+ L D I L K ++ + +F + P+ P L ++L+I
Sbjct: 438 QAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEI 496
Query: 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTS 667
+K+A+ G G+GKS+LL +LG G + L G + YV Q
Sbjct: 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDP 556
Query: 668 WIQSGSIRDNILYGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
++ SGSIR+NI G P D+ + A A A + I N G T +G+ G NLSGGQ+
Sbjct: 557 FLFSGSIRENIALGNPEATDEEIIEAAQLAGAHE-FIENLPMGYDTPVGEGGANLSGGQR 615
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV 785
QR+ LARA+ + I L D+ SA+D T A + + ++ L+ +TVI++ H++ +
Sbjct: 616 QRLALARALLSKPKILLLDEATSALDPETEA-IILQNLLQILQGRTVIIIAHRLSTIRSA 674
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
DRI+VL+ G+I + G+++ELL G + +L
Sbjct: 675 DRIIVLDQGKIVEQGSHEELLAQGGLYARLYQ 706
|
Length = 709 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 2e-50
Identities = 84/237 (35%), Positives = 142/237 (59%), Gaps = 6/237 (2%)
Query: 1216 IELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
IE + + RY RP+ P +LKG++ T G V +VG +G GK+T++S L R +P G
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYS--DDEIWKALEKCQL 1331
IL+DGVDI + L+ LR ++ ++ QEP LF G++ N+ G D+E+ +A +K +
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIR-YGKPDATDEEVEEAAKKANI 118
Query: 1332 KTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAIL 1391
I SLP+ D+ V + G S GQ+Q + R LL+ +IL+LDEA +++D+ ++ ++
Sbjct: 119 HDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178
Query: 1392 QRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 1448
Q + + T I +AHR+ T+ ++D++ VL G+++E +LM ++KLV
Sbjct: 179 QEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 2e-49
Identities = 76/237 (32%), Positives = 133/237 (56%), Gaps = 10/237 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + Y P P VLK ++ T G +V +VG +GSGK+T++ LFR + + GSIL
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY-----SDDEIWKALEKCQ 1330
IDG DI + L LR + ++PQ+ LF ++ N+ Y +D+E+ +A + Q
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNI----RYGRPDATDEEVIEAAKAAQ 115
Query: 1331 LKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAI 1390
+ I P+ D+ V + G S G++Q + R +LK IL+LDEA +++D+ T+
Sbjct: 116 IHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTERE 175
Query: 1391 LQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 1447
+Q +R T I +AHR+ T++++D ++VL G+++E +L+ ++++
Sbjct: 176 IQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 5e-49
Identities = 118/576 (20%), Positives = 233/576 (40%), Gaps = 62/576 (10%)
Query: 906 VLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFV-----------YF 954
VLA + + A + A + + G V + V +
Sbjct: 17 VLAGVAMILVAATESTLAAL---LKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFV 73
Query: 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIV 1014
++ + + K + + P+ FFD P G +L+R++ D + + +
Sbjct: 74 STYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFI 133
Query: 1015 FVAASGTELLAIIGIMTFVTWQV--LVVAIFAMVAVRFVQRYYIATARELIRINGTTKAP 1072
+ ++ + ++ + +WQ+ +VV + +++ + R R + + +
Sbjct: 134 VLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLS--ILMRRVSKRLRRISKEIQNSMGQ 191
Query: 1073 VMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVE----AL 1128
V ET QG ++ F + + + + L +++
Sbjct: 192 VTTVAEETLQGYRVVKLFGGQAYETRRFDAV-----------SNRNRRLAMKMTSAGSIS 240
Query: 1129 QNLTLFTAA------LFLVLIPR--GYVAPG-LVGLSLSYAF------TLTGTQVFLSRW 1173
+T A+ LF+ L G + G + +LT + R
Sbjct: 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRG 300
Query: 1174 YCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVL 1233
+ + E + + PPE R +G +E R + RY L
Sbjct: 301 -------LAAAESLFTLLDSPPEKD---TGTRAIER--ARGDVEFRNVTFRYPGRDRPAL 348
Query: 1234 KGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293
I+ G V +VGR+GSGK+TL++ + R EP G IL+DG D+ L LR ++
Sbjct: 349 DSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQV 408
Query: 1294 SIIPQEPTLFRGSVRTNL--DPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGE 1351
+++ Q+ LF ++ N+ EI +AL + + LP LD+ + + G
Sbjct: 409 ALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGV 468
Query: 1352 NWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRV 1411
S GQRQ + R LLK IL+LDEA +++D+ ++ ++Q + + T + +AHR+
Sbjct: 469 LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRL 528
Query: 1412 PTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 1447
T+ +D ++V+ G+++E ++L+ N +++L
Sbjct: 529 STIEKADRIVVMDDGRIVERGTHNELLARNGLYAQL 564
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 1e-48
Identities = 73/237 (30%), Positives = 126/237 (53%), Gaps = 9/237 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E + + RY + P VL+ I+ G V +VG +GSGK+TL++ + R + G IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY-----SDDEIWKALEKCQ 1330
IDG D+ L LR ++ ++ Q+ LF +V N+ Y + +E+ +A
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENI----AYGRPGATREEVEEAARAAN 116
Query: 1331 LKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAI 1390
I LP D+ + + G S GQRQ + R LLK IL+LDEA +++D+ ++ +
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 1391 LQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 1447
+Q + + N T +AHR+ T+ ++D ++VL GK++E +L+ ++KL
Sbjct: 177 VQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 1e-48
Identities = 142/485 (29%), Positives = 237/485 (48%), Gaps = 66/485 (13%)
Query: 976 NSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF--- 1032
++ + P+ FD+ PVG++++R+++D ++ D+ V V A+ A+IG M
Sbjct: 106 DAALRQPLSAFDTQPVGQLISRVTNDTEVIR-DL---YVTVVATVLRSAALIGAMLVAMF 161
Query: 1033 -VTWQVLVVA--IFAMVAVRFV--QRYYIATARELIRINGTTKAPVMNYTA-------ET 1080
+ W++ +VA IF V V V QRY R V Y A E
Sbjct: 162 SLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRR-----------VRAYLADINDGFNEV 210
Query: 1081 SQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFL 1140
G+ I+ F RF + ++ + S H M+ L L L+ L +AL L
Sbjct: 211 INGMSVIQQFRQQARFGE---RMGEASRS---HYMARMQTLRLDGFLLRPLLSLFSALIL 264
Query: 1141 --VLIPRGYVAPGLVGLSLSYAF------------TLTGTQVFLSRWYCYLANYIISVER 1186
+L+ G+ A G + + + YAF LT Q L + +++ ER
Sbjct: 265 CGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQ-------AVVAGER 317
Query: 1187 IKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRV 1246
+ + M P + D RP S GRI++ + YR + VL+ I + V
Sbjct: 318 VFELMDGPRQQYG--NDDRPLQS----GRIDIDNVSFAYRDDNL-VLQNINLSVPSRGFV 370
Query: 1247 GVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGS 1306
+VG TGSGK+TL S L G I +DG + S+ LR ++++ Q+P + +
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADT 430
Query: 1307 VRTNLDPLGL-YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365
N+ LG S++++W+ALE QL SLP+ L + + ++G N S GQ+QL L R
Sbjct: 431 FLANV-TLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALAR 489
Query: 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSY 1425
VL++ +IL+LDEA A+IDS T+ +Q+ + + T++ +AHR+ T++++D ++VL
Sbjct: 490 VLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHR 549
Query: 1426 GKLLE 1430
G+ +E
Sbjct: 550 GQAVE 554
|
Length = 592 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 1e-47
Identities = 115/569 (20%), Positives = 220/569 (38%), Gaps = 66/569 (11%)
Query: 917 AAATYWLAYAIQ-----IPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFF 971
A LA + + L+ + A + R K +
Sbjct: 17 IAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLR 76
Query: 972 SGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMT 1031
+ + K F P G T + L+ P+ ++ + + I+
Sbjct: 77 QLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLE---PYYARYLPQMFLSAIVPLLILI 133
Query: 1032 FVTWQVLVVAIFAMVAVRFVQRYYIAT---ARELIRINGTTKAPVMNYTAETSQGVVTIR 1088
+ + A+ ++ + + I A++ + A + + + +G+ T+R
Sbjct: 134 AIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLR 193
Query: 1089 AFNMVDRFFQNYLKLVDIDASLF-----------FHTNGVMEWLI------------LRV 1125
AF + + + D+ F F ++ V+E+ R+
Sbjct: 194 AFGRTEA----TEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRL 249
Query: 1126 EALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVE 1185
+LTLF L+L P + +G F A + +
Sbjct: 250 LGEGDLTLFAGLFVLILAPEFFQPLRDLG----SFFHAA-------------AAGEAAAD 292
Query: 1186 RIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTR 1245
++ + P P ++ + I L L RY P+ L + T G
Sbjct: 293 KLFTLLESPVATPG--SGEKAEVANEPPIEISLENLSFRY-PDGKPALSDLNLTIKAGQL 349
Query: 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG 1305
+VG +G+GK+TL++ L + P G I ++G+D+ + + R ++S + Q P LF G
Sbjct: 350 TALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG 409
Query: 1306 SVRTNLDPLGLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361
++R N+ L SD+EI AL++ L + P+ LD+ + + G S GQ Q
Sbjct: 410 TIRENI---LLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRL 465
Query: 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVM 1421
L R LL +L+LDE A +D+ T+ I+ + +++ TV+ + HR+ D+D ++
Sbjct: 466 ALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIV 525
Query: 1422 VLSYGKLLEYDEPSKLMETNSSFSKLVAE 1450
VL G+L+E +L E ++ L+ +
Sbjct: 526 VLDNGRLVEQGTHEELSEKQGLYANLLKQ 554
|
Length = 559 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 179 bits (455), Expect = 2e-46
Identities = 139/532 (26%), Positives = 244/532 (45%), Gaps = 59/532 (11%)
Query: 945 STASAVFVYFR----SFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSS 1000
S AS+V R ++ A + L+ + F S+ + + FFD G + +RLSS
Sbjct: 211 SIASSVSAGLRGGSFNYTMARINLRIREDLFR----SLLRQDLGFFDENKTGELTSRLSS 266
Query: 1001 DLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQR----YYI 1056
D + + ++ + + LL ++G M +++ ++ +V + + V ++ Y
Sbjct: 267 DTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQ 326
Query: 1057 ATARELIRINGTTKAPVMNYTAETSQ-------GVVTIRAF----NMVDRFFQ--NYLKL 1103
+ E + A+ +Q G+ T+R+F RF +
Sbjct: 327 LLSEE-----------LQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQ 375
Query: 1104 V----DIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSY 1159
+ + + + T V+ LI + + LVL G V+ G + L Y
Sbjct: 376 LNKRKALAYAGYLWTTSVLGMLIQ-------VLVLYYGGQLVL--TGKVSSGNLVSFLLY 426
Query: 1160 AFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELR 1219
L LS Y + + + E++ +++ P P P +G IE +
Sbjct: 427 QEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT-LAPL---NLEGLIEFQ 482
Query: 1220 QLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILID 1277
+ Y RP+ P VLKG+T T G V +VG +GSGK+T+ + L L +P GG +L+D
Sbjct: 483 DVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541
Query: 1278 GVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD-PLGLYSDDEIWKALEKCQLKTTIS 1336
GV + L +++++ QEP LF GSVR N+ L D+EI A + I
Sbjct: 542 GVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 1337 SLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIR 1396
PN D+ V ++G S GQ+Q + R L+++ R+L+LDEA +++D+ + +LQ
Sbjct: 602 EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES-- 659
Query: 1397 QEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 1448
+ ++ TV+ +AHR+ TV +D ++VL G ++E +LME + LV
Sbjct: 660 RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 2e-44
Identities = 146/576 (25%), Positives = 250/576 (43%), Gaps = 76/576 (13%)
Query: 917 AAATYWLAYAI-----------QIPKITSGI--LIGVYAGVSTASAVFVYFRSFFAAHLG 963
AAAT L YA+ + L+ V ++ +A R + LG
Sbjct: 31 AAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTA----ARFYLVTWLG 86
Query: 964 LKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023
+ + FFD G +++RL++D ++L I S+ +
Sbjct: 87 ERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRN---A 143
Query: 1024 LAIIG--IMTFVT------WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMN 1075
L IG IM F+T +L V + + + F +R R+L R + A +
Sbjct: 144 LMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRR-----VRKLSRESQDRIADAGS 198
Query: 1076 YTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME--WLILRVEALQNLTL 1133
Y ET + T++AF D + S F G +E + R L
Sbjct: 199 YAGETLGAIRTVQAFGHEDA-----------ERSRF---GGAVEKAYEAARQRIRTRALL 244
Query: 1134 FTAALFLVL-------------IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANY 1180
+ LV + G ++ G +G + YA + G+ LS + L
Sbjct: 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRA 304
Query: 1181 IISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRY--RPNAPLVLKGITC 1238
+ ER+ + + P+ A K P P +G IE Q+ Y RP+ P L G+
Sbjct: 305 AGAAERLIELLQAEPDIKAPAHPKTLPV--PLRGEIEFEQVNFAYPARPDQP-ALDGLNL 361
Query: 1239 TFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQ 1298
T G V +VG +G+GK+TL L R +P G IL+DGVD+ + +LR +++++PQ
Sbjct: 362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQ 421
Query: 1299 EPTLFRGSVRTNL-----DPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENW 1353
+P LF SV N+ D +D+E+ A IS+LP D+ + + G
Sbjct: 422 DPVLFAASVMENIRYGRPDA----TDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTL 477
Query: 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPT 1413
S GQRQ + R +LK IL+LDEA +++D+ ++ ++Q+ + T + +AHR+ T
Sbjct: 478 SGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLAT 537
Query: 1414 VIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449
V+ +D ++V+ G+++ ++L+ +++L
Sbjct: 538 VLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLAR 573
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 8e-44
Identities = 139/581 (23%), Positives = 233/581 (40%), Gaps = 69/581 (11%)
Query: 282 IAICALLRTIAVVVGPLLL-YAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFF 340
A+ A+L IA++ LL + Q L ++ L+I V+ +F +
Sbjct: 5 SALLAVLSGIAIIAQAALLADILTKLIE--GQLFQSLLPLLILLLIALVLRAFLA---WL 59
Query: 341 GSR---RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIA-----VDAYRMGEFP 392
R R+ ++R++L V K KL + G ++ Y P
Sbjct: 60 RERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLP 119
Query: 393 FWFHLTWSLALQLFLAIGVLF---GVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFM 449
F + L + +AI ++ L P + LF+I L+ + +K S
Sbjct: 120 QMFLSAI-VPLLILIAIFFFNWAAALILLITAPLIPLFMI--LVGLAAKDASEKQFSALA 176
Query: 450 IAQD---ERLRSTSEILNNMKIIKL-QSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV 505
+RLR L ++ ++ EE+ + E R+ L A L A
Sbjct: 177 RLSGHFLDRLRG----LETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEF 232
Query: 506 IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVL-------ATLRSMGEP--VRMIPEAL 556
+I +++G L G L VL LR +G EA
Sbjct: 233 F--AYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAA 290
Query: 557 SIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS--VKIQEGNFSWDPELAIPTLR 614
+ D++ L E + ++I N S+ P L
Sbjct: 291 A---------DKLFTLL---ESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALS 338
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV-------------NLYGSIA 661
+NL IK Q A+ G+ GAGKS+LL +LG + G + I+
Sbjct: 339 DLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398
Query: 662 YVSQTSWIQSGSIRDNILYGKPMD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720
+VSQ ++ +G+IR+NIL +P A+ L + + D D T IG+ G L
Sbjct: 399 WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLD-TVIGEGGAGL 457
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE 780
SGGQ QR+ LARA+ + A + L D+P + +DA T + A ++KTV+++TH++E
Sbjct: 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELA-KQKTVLVITHRLE 516
Query: 781 FLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRD 821
++ DRI+VL+ G++ + G ++EL + L+
Sbjct: 517 DAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557
|
Length = 559 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 8e-44
Identities = 128/540 (23%), Positives = 235/540 (43%), Gaps = 52/540 (9%)
Query: 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILT 996
L+ + V + + ++ L +K + + F I + P+ FF G I +
Sbjct: 196 LLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIAS 255
Query: 997 RLSSDLSILDF---DIP---FSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRF 1050
R+ + + +F + V + +L ++T + + A ++A++
Sbjct: 256 RVQLNDQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI---GIAFAAINVLALQL 312
Query: 1051 VQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN----YLKLVDI 1106
V R + R L + + Q + T++A + FF KL++
Sbjct: 313 VSRRRVDANRRLQQ----DAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNA 368
Query: 1107 DASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV----LIPRGYVAPG--LVGLSLSYA 1160
L GV+ ++ + L LT +AL LV + G + G + SL +
Sbjct: 369 QQEL-----GVLTQILGVLPTL--LTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSS 421
Query: 1161 FT--LTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE---DKRPPSSWPFKGR 1215
F + F + + R+ + P +P E S G
Sbjct: 422 FLEPVNNLVGFGGTLQELEGD----LNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGY 477
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT---LISALFRLVEPAGG 1272
+ELR + Y P P +++ + T G RV +VG +GSGK+T L++ L++ P G
Sbjct: 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSG 534
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL---DPLGLYSDDEIWKALEKC 1329
IL DG+ + + L ++++ Q+ LF G+VR NL DP D ++ +A +
Sbjct: 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPT--IPDADLVRACKDA 592
Query: 1330 QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA 1389
+ I+S P D+ +++ G N S GQRQ + R L++ IL+LDEA +++D T+
Sbjct: 593 AIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEK 652
Query: 1390 ILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449
I+ +R+ CT I VAHR+ T+ D D ++VL GK+++ +L ++++L+
Sbjct: 653 IIDDNLRRR--GCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 3e-43
Identities = 106/473 (22%), Positives = 198/473 (41%), Gaps = 35/473 (7%)
Query: 992 GRILTRLSSDLSILDFDI-------PFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFA 1044
G +L RL +D+ LD ++ + + A T L+ I + + ++ +
Sbjct: 115 GDLLNRLVADVDALD-NLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALL--LGLILLLL 171
Query: 1045 MVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLV 1104
++ + + + +A + + + QG + F D +
Sbjct: 172 LLIIPTLFYRAGRKFGAHLAQG---RAALRSQFTDWVQGQAELLIFGAEDAYRTALEA-- 226
Query: 1105 DIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV----LIPRGYVAPGLVGLSLSYA 1160
+AS + L L + L+ + G +A L+L
Sbjct: 227 -TEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVI 285
Query: 1161 FTLTGTQVFLSRWYCY-LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELR 1219
F L+ L I S R+ I + P + ++ +ELR
Sbjct: 286 FAALEAFEPLAPGAFQHLGQVIASARRLND---ILDQKPEVTFPDEQTATTGQA--LELR 340
Query: 1220 QLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279
+ Y LK T ++G +V ++GR+GSGK+TL+ L +P GSI ++GV
Sbjct: 341 NVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGV 400
Query: 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL-----DPLGLYSDDEIWKALEKCQLKTT 1334
+I S+ + LR +S++ Q LF G++R NL D SD+E+W AL++ L+
Sbjct: 401 EIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDA----SDEELWAALQQVGLEKL 456
Query: 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRI 1394
+ S P+ L++ + + G S G+R+ L R LL + +LDE +D T+ + +
Sbjct: 457 LESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516
Query: 1395 IRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 1447
+ + T++ V HR+ + D ++VL GK++E ++L+ N + +L
Sbjct: 517 LFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRL 569
|
Length = 573 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 168 bits (429), Expect = 3e-43
Identities = 138/544 (25%), Positives = 235/544 (43%), Gaps = 50/544 (9%)
Query: 929 IPKITSGILIGVYAG---VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLF 985
IP +L+ + + +A F +S L + + + + + + P+ F
Sbjct: 167 IPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSF 226
Query: 986 FDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAM 1045
F G + +R I + S + SG L +G+M + +W++ +VA+ A+
Sbjct: 227 FRQYSTGDLASRAMGISQIRRI-LSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAV-AL 284
Query: 1046 VAVR--------FVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097
V +Q R L+ ++G + T + G+ +R +R F
Sbjct: 285 ALVAIAVTLVLGLLQVRK---ERRLLELSGK----ISGLTVQLINGISKLRVAGAENRAF 337
Query: 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGL-VG-- 1154
+ KL L + L + L L +AALF I GL +G
Sbjct: 338 ARWAKLFSRQRKLELSAQRIENLLTVFNAVLP--VLTSAALFAAAI-SLLGGAGLSLGSF 394
Query: 1155 LSLSYAFTLTGTQVFLSRWYCYLANYIISV-------ERIKQFMHIPPEPPAIVEDKRPP 1207
L+ + AF V L+N +IS+ ER K + PE + E K P
Sbjct: 395 LAFNTAFGSFSGAV-TQ-----LSNTLISILAVIPLWERAKPILEALPE---VDEAKTDP 445
Query: 1208 SSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV 1267
G IE+ ++ RYRP+ PL+L ++ G V +VG +GSGK+TL+ L
Sbjct: 446 G--KLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503
Query: 1268 EPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALE 1327
P GS+ DG D+ + ++ +R +L ++ Q L GS+ N+ + DE W+A
Sbjct: 504 TPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAAR 563
Query: 1328 KCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSAT 1387
L I ++P + + +S+ G S GQRQ + R L+++ RIL+ DEA SA
Sbjct: 564 MAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT----SAL 619
Query: 1388 DAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFS 1445
D Q I+ + T I +AHR+ T+ ++D + VL G++++ +LM F+
Sbjct: 620 DNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFA 679
Query: 1446 KLVA 1449
+L
Sbjct: 680 QLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 3e-42
Identities = 122/455 (26%), Positives = 216/455 (47%), Gaps = 50/455 (10%)
Query: 1008 DIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRING 1067
D+PF+++F+ ++AIIG + W LV ++ +QR A E +R
Sbjct: 269 DLPFALLFLL-----VIAIIG--GPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMR-ES 320
Query: 1068 TTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLV----DIDASLFFHTNGVMEWLIL 1123
+ V+ E+ G+ TI+A N RF + + + V F +N +
Sbjct: 321 AQRNAVL---VESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNF--- 374
Query: 1124 RVEALQNLTLFTAALFLV---LIPRGYVAPG-LVGLSLSYAFTLTG------TQV--FLS 1171
+ +Q L + A+ +V LI G + G L+ + L+G Q+ L+
Sbjct: 375 -AQFIQQLV--SVAIVVVGVYLISDGELTMGGLIACVM-----LSGRALAPLGQLAGLLT 426
Query: 1172 RWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPL 1231
R+ +++ + + M +P E P E R +G IE R + Y
Sbjct: 427 RYQ----QAKTALQSLDELMQLPVERP---EGTRFLHRPRLQGEIEFRNVSFAYPGQETP 479
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
L ++ T G +V ++GR GSGK+TL+ L L +P GS+L+DGVDI + DLR
Sbjct: 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539
Query: 1292 KLSIIPQEPTLFRGSVRTNLDPLG--LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDE 1349
+ +PQ+P LF G++R N+ LG D+EI +A E + + P+ LD + +
Sbjct: 540 NIGYVPQDPRLFYGTLRDNIA-LGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGER 598
Query: 1350 GENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAH 1409
G + S GQRQ L R LL+ IL+LDE +++D+ ++ + +++ + T++ V H
Sbjct: 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTH 658
Query: 1410 RVPTVID-SDMVMVLSYGKLLEYDEPSKLMETNSS 1443
R +++D D ++V+ G+++ +++E
Sbjct: 659 R-TSLLDLVDRIIVMDNGRIVADGPKDQVLEALRK 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 8e-42
Identities = 135/532 (25%), Positives = 240/532 (45%), Gaps = 43/532 (8%)
Query: 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRIL 995
+L V+ R++ AHL + + + P+ +F+S VG +
Sbjct: 180 VLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTV 239
Query: 996 TRLSSDLSILDF----------DIPFSIVFVAA----SGTELLAIIGIMTFVTWQVLVVA 1041
R+ I +F D+ F +VF+A S T +IG + V + +L V
Sbjct: 240 ARVRELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIG--SLVCYALLSVF 297
Query: 1042 IFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101
+ ++ R ++ A ++ E+ G+ TI+A +F +
Sbjct: 298 VGPILRKRVEDKF-------------ERSAAATSFLVESVTGIETIKATATEPQFQNRWD 344
Query: 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFL--VLIPRGYVAPG-LVGLSLS 1158
+ + + F + +E +Q LT F L+ L+ G ++PG LV ++
Sbjct: 345 RQLAAYVAASFRVTNLGNIAGQAIELIQKLT-FAILLWFGAHLVIGGALSPGQLVAFNM- 402
Query: 1159 YAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIEL 1218
A +T + L++ + I++ER+ ++ P EP + P +G I
Sbjct: 403 LAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPE----LRGAITF 458
Query: 1219 RQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278
++ RY P++P VL + G +G+VG +GSGK+TL L RL P G +L+DG
Sbjct: 459 ENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518
Query: 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL---DPLGLYSDDEIWKALEKCQLKTTI 1335
VD+ LR ++ ++ QE LF S+R N+ +P + + A + I
Sbjct: 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGA--PFEHVIHAAKLAGAHDFI 576
Query: 1336 SSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRII 1395
S LP ++ V ++G N S GQRQ + R L+ RIL+ DEA +++D ++A++ R +
Sbjct: 577 SELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM 636
Query: 1396 RQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 1447
R+ TVI +AHR+ TV D ++VL G++ E +L+ +++L
Sbjct: 637 REICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 2e-41
Identities = 118/499 (23%), Positives = 231/499 (46%), Gaps = 48/499 (9%)
Query: 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFL 407
R+ SAL V +++K LS ++ +G+++N + D + +AL L
Sbjct: 88 RVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIA 147
Query: 408 AIGVLFGVVGLGALPGLVLFLICGLLNVP--FAKILQKCQSEFMIAQDERLRS-TSEILN 464
+ + + L L L+ LL +P F + +K + + LRS ++ +
Sbjct: 148 VVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGR-AALRSQFTDWVQ 206
Query: 465 NMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSP------TIISSVI 518
+ + E+ + + E WL +AQ ++A T + +I ++
Sbjct: 207 GQAELLIFGAEDAY---RTALEATEASWL-KAQRKQARFTGLSDAILLLIAGLLVIGLLL 262
Query: 519 FLGCAL---TGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLD 575
++ + + P A + + A L + EP+ P A + QV S R+N +LD
Sbjct: 263 WMAAQVGAGALAQPGAALALLVIFAALEAF-EPLA--PGAFQHLGQVIASARRLND-ILD 318
Query: 576 H----ELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGS 631
++ + ++++++ +F++ P L+ NL + +K+A+ G
Sbjct: 319 QKPEVTFPDEQTAT-----TGQALELRNVSFTY-PGQQTKALKNFNLTLAQGEKVAILGR 372
Query: 632 VGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNI 678
G+GKS+LL + G G++ L G +I+ ++Q + SG++RDN+
Sbjct: 373 SGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNL 432
Query: 679 LYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736
P D+ + A++ L+K + + G T +G+ G LSGG+++R+ LARA+ +
Sbjct: 433 RLANPDASDEELWA-ALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH 491
Query: 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796
DA ++L D+P +D T + + E KT+++VTH++ L +DRI+VL+ G+I
Sbjct: 492 DAPLWLLDEPTEGLDPITERQVL-ALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKI 550
Query: 797 TQSGNYQELLLAGTAFEQL 815
+ G + ELL +++L
Sbjct: 551 IEEGTHAELLANNGRYKRL 569
|
Length = 573 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 2e-41
Identities = 80/214 (37%), Positives = 120/214 (56%), Gaps = 16/214 (7%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658
+FS+ + IP L V+L I+ +K+A+ G VG+GKS+LL + G SG+V L G
Sbjct: 9 SFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTD 67
Query: 659 -----------SIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNFD 706
+I YV Q + G++RDNI G P+ D R +A + + +N
Sbjct: 68 IRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHP 127
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+G +IG+RG LSGGQ+Q + LARA+ ND I L D+P SA+D ++ L E +
Sbjct: 128 NGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK-ERLRQL 186
Query: 767 LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
L KT+I++TH+ L VDRI+V++ G+I G
Sbjct: 187 LGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 2e-41
Identities = 75/216 (34%), Positives = 117/216 (54%), Gaps = 1/216 (0%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
GRIE R + Y L ++ T G +V ++GR GSGK+TL+ L L +P GS
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDE-IWKALEKCQLK 1332
+L+DG DI + DLR + +PQ+ TLF G++R N+ +DDE I +A E +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQ 1392
++ PN LD + + G S GQRQ L R LL IL+LDE +++D ++ L+
Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK 180
Query: 1393 RIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKL 1428
+RQ + T+I + HR + D ++V+ G++
Sbjct: 181 ERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 2e-41
Identities = 76/237 (32%), Positives = 128/237 (54%), Gaps = 5/237 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I ++ RY+P+ P++L I+ G VG+VGR+GSGK+TL + R P G +L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL---DPLGLYSDDEIWKALEKCQLK 1332
+DG D+ LR ++ ++ QE LF S+R N+ DP S + + +A +
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADP--GMSMERVIEAAKLAGAH 118
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQ 1392
IS LP D+ V ++G S GQRQ + R L+ RIL+ DEA +++D ++ +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1393 RIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449
R + + TVI +AHR+ TV ++D ++V+ G+++E +L+ N ++ L
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 2e-40
Identities = 85/297 (28%), Positives = 135/297 (45%), Gaps = 29/297 (9%)
Query: 1131 LTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQF 1190
L L T L+L P Y P L L Y G + + E +
Sbjct: 258 LDLATGLFVLLLAPEFY-LP-LRQLGAQYHARADG---------------VAAAEALFAV 300
Query: 1191 MHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVG 1250
+ P P A + +E + + Y P L+ ++ T G RV +VG
Sbjct: 301 LDAAPRPLAGKAPVTAAPAPS----LEFSGVSVAY-PGRRPALRPVSFTVPPGERVALVG 355
Query: 1251 RTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTN 1310
+G+GK+TL++ L V+P GSI ++GV + R +++ +PQ P LF G++ N
Sbjct: 356 PSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAEN 415
Query: 1311 LDPLGLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366
+ L SD EI +ALE+ L +++LP LD+ + + G S GQ Q L R
Sbjct: 416 ---IRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARA 472
Query: 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVL 1423
L+ +L+LDE A +D+ T+A + +R TV+ V HR+ +D ++VL
Sbjct: 473 FLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 3e-40
Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 25/233 (10%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--------- 645
++ + NFS+D + P L+ +N IK + +A+ G GAGK++L+ ++
Sbjct: 3 IEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 646 --------EIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKAC 696
+I + S L I V Q +++ SG+I +NI G+P +A K
Sbjct: 61 LIDGIDIRDISRKS----LRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEA 116
Query: 697 ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA 756
I +G T +G+ G NLS G++Q + +ARA+ D I + D+ S +D T
Sbjct: 117 GAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK 176
Query: 757 TLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809
+ E + ++ +T I++ H++ + D+ILVL+ G+I + G + ELL
Sbjct: 177 LI-QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 6e-40
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 56/214 (26%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
++ + +FS+ P L+ V+L IK +K+A+ G G+GKS+LL +L SG +
Sbjct: 1 IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
+ G +IAYV Q ++ SG+IR+NIL
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL---------------------- 97
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
SGGQ+QRI +ARA+ D I + D+ SA+D T A L E
Sbjct: 98 -------------------SGGQRQRIAIARALLRDPPILILDEATSALDPETEA-LILE 137
Query: 762 CVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795
+ A + KTVI++ H++ + + DRI+VL+ G+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 5e-39
Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 23/224 (10%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGT----VNL---YGSIAYV 663
+N + Q+IA+ G GAGK+SLL A+LG +P KI+G ++ +++V
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 664 SQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722
Q + G++RDN+L G P + +A++ + + + G T IG + LS
Sbjct: 429 GQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV 488
Query: 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVILVTHQ 778
GQ QR+ LARA+ + L D+P +++DAH+ + VM AL +T ++VTHQ
Sbjct: 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSE-----QLVMQALNAASRRQTTLMVTHQ 543
Query: 779 VEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDA 822
+E L++ D+I V++ GQI Q G+Y EL AG F L AHR
Sbjct: 544 LEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATL-LAHRQE 586
|
Length = 588 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 3e-38
Identities = 77/240 (32%), Positives = 125/240 (52%), Gaps = 26/240 (10%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEI 647
V+ + F + + P LR ++LDI + +A+ G G+GKS+L+ I G I
Sbjct: 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 648 PKISGT-------VNLYGSIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALD 699
I G +L I VSQ ++ + ++ +NI YG+P + ++A +A
Sbjct: 60 -LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAH 118
Query: 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
+ I G T IG+RG+ LSGGQ+QRI +ARA+ D I + D+ SA+D +
Sbjct: 119 EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES----- 173
Query: 760 NECVMAALEK----KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
V AALE+ +T ++ H++ + DRI+VLE G+I + G ++ELL G + +L
Sbjct: 174 ERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 3e-38
Identities = 129/527 (24%), Positives = 210/527 (39%), Gaps = 38/527 (7%)
Query: 904 LGVLAQSGFVGLQAAATYWLAYAIQIPKIT--SGILIGVYA-GVSTASAVFVYFRSFFAA 960
LG LA V L + + ++ A ++P + S + V A G+ AVF Y
Sbjct: 21 LGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIG--RAVFRYLERLVGH 78
Query: 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020
L++ A + + + G +L RL +D+ L IV +
Sbjct: 79 DAALRSLGALRVRVYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVRVIVPAGVAL 138
Query: 1021 TELLAIIGIMTFVTWQV-LVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAE 1079
A + + ++ L++A ++A + AR + + + +
Sbjct: 139 VVGAAAVAAIAVLSVPAALILAAGLLLAGFVAPLVSLRAARAAEQALARLRGELAAQLTD 198
Query: 1080 TSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF 1139
G + A + + D L L AL L A L
Sbjct: 199 ALDGAAELVASGALPAALAQV---EEADRELTRAERRAAAATALG-AALTLLAAGLAVLG 254
Query: 1140 LVLIPRGYVAPG-----------LVGLSLSYAFT-LTGTQVFLSRWYCYLANYIISVERI 1187
+ VA G L+ L+ AF L L+R + ERI
Sbjct: 255 ALWAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTR-------VRAAAERI 307
Query: 1188 KQFMHIPPEPP-AIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRV 1246
+ + P A + K +ELR L Y P AP VL G++ G RV
Sbjct: 308 VEV--LDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGY-PGAPPVLDGVSLDLPPGERV 364
Query: 1247 GVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGS 1306
++G +GSGK+TL++ L L++P G + +DGV + S+ ++R ++S+ Q+ LF +
Sbjct: 365 AILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTT 424
Query: 1307 VRTNL---DPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCL 1363
VR NL P +D+E+W ALE+ L + +LP+ LD+ + + G S G+RQ L
Sbjct: 425 VRENLRLARPDA--TDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLAL 482
Query: 1364 GRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHR 1410
R LL IL+LDE +D+ T L + S TV+ + H
Sbjct: 483 ARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 6e-38
Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 25/228 (10%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISG----TVNLY- 657
+P L+G++L I + +A+ GS G GKS+++ + GEI + G +NL
Sbjct: 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL-LDGVDIRDLNLRW 74
Query: 658 --GSIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIG 714
I VSQ + G+I +NI YGKP ++A K + I + G T +G
Sbjct: 75 LRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVG 134
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----K 770
+RG LSGGQKQRI +ARA+ + I L D+ SA+DA + V AL++ +
Sbjct: 135 ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL-----VQEALDRAMKGR 189
Query: 771 TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
T I++ H++ + D I VL+ GQ+ + G + EL+ + +LV A
Sbjct: 190 TTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKA 237
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 2e-37
Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 21/230 (9%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISG-- 652
F++DP P L+ V+ I +K+A+ G G+GKS++L + G I I G
Sbjct: 8 FAYDPGR--PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI-LIDGQD 64
Query: 653 ----TVN-LYGSIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNF 705
T++ L +I V Q + + + +I NI YG+P D+ +A KA + I F
Sbjct: 65 IREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVI-EAAKAAQIHDKIMRF 123
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
G T +G+RGL LSGG+KQR+ +ARA+ + I L D+ SA+D HT + +
Sbjct: 124 PDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ-AALRD 182
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+ +T I++ H++ + D+I+VL+ G+I + G ++ELL G + ++
Sbjct: 183 VSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 2e-37
Identities = 86/279 (30%), Positives = 141/279 (50%), Gaps = 19/279 (6%)
Query: 543 RSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNF 602
R++ P+ + L+ Q K + ++ L+ + + R L + +I+ N
Sbjct: 413 RALA-PLGQLAGLLTRYQQAKTALQSLDE-LMQLPVERPEGTRF-LHRPRLQGEIEFRNV 469
Query: 603 SWD-PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--- 658
S+ P P L V+L I+ +K+A+ G +G+GKS+LL +LG G+V L G
Sbjct: 470 SFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI 529
Query: 659 ----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDH 707
+I YV Q + G++RDNI G P D +A + + + +
Sbjct: 530 RQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPD 589
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
G +IG+RG +LSGGQ+Q + LARA+ D I L D+P SA+D + + F + + L
Sbjct: 590 GLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD-NRSEERFKDRLKRWL 648
Query: 768 EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
KT++LVTH+ L VDRI+V++ G+I G ++L
Sbjct: 649 AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVL 687
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 2e-37
Identities = 89/314 (28%), Positives = 153/314 (48%), Gaps = 10/314 (3%)
Query: 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIV 1201
+ G + G + + F L+ FL Y + + +++ + +
Sbjct: 191 GVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALT---DMEKMFDLLDVEAEVS 247
Query: 1202 EDKRPPSSWPF-KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLI 1260
+ P WP G + + Y P P +L GI+ T G V +VG +G+GK+T++
Sbjct: 248 DAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTIL 306
Query: 1261 SALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSD 1319
LFR + GSI IDG DI + + LR + I+PQ+ LF ++ N+ +
Sbjct: 307 RLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATA 366
Query: 1320 DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEA 1379
+E+ A E Q+ I SLP D+ V + G S G++Q + R +LK IL+LDEA
Sbjct: 367 EEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEA 426
Query: 1380 NASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME 1439
+++D+ T+ +Q +R+ + T + +AHR+ T+ID+D ++VL G+++E +L+
Sbjct: 427 TSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLA 486
Query: 1440 TNSSFSKLVAEYWS 1453
L AE W
Sbjct: 487 AGG----LYAEMWR 496
|
Length = 497 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 8e-37
Identities = 70/219 (31%), Positives = 125/219 (57%), Gaps = 4/219 (1%)
Query: 1213 KGRIELRQLKIRYRPNAP--LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA 1270
KG ++ + + Y P P LVL+ ++ T G +VG +GSGK+T+++ L +P
Sbjct: 9 KGIVKFQNVTFAY-PTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67
Query: 1271 GGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD-PLGLYSDDEIWKALEKC 1329
GG +L+DG I K L K+S++ QEP LF S++ N+ L S + + +A +K
Sbjct: 68 GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKA 127
Query: 1330 QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA 1389
+ IS L + D+ V ++G S GQ+Q + R L++ ++L+LDEA +++D+ ++
Sbjct: 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 1390 ILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKL 1428
+Q+ + TV+ +AHR+ TV +D ++VL G++
Sbjct: 188 QVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 9e-37
Identities = 79/270 (29%), Positives = 140/270 (51%), Gaps = 14/270 (5%)
Query: 1186 RIKQFMHIPPEPPAIVE--DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEG 1243
++++F + P + + KG +E + Y N+ ++ ++ G
Sbjct: 305 KLEEFFEVEDAVPDVRDPPGAIDLGR--VKGAVEFDDVSFSY-DNSRQGVEDVSFEAKPG 361
Query: 1244 TRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
V +VG TG+GK+TLI+ L R+ +P G ILIDG DI ++ LR ++++ Q+ LF
Sbjct: 362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF 421
Query: 1304 RGSVRTNLDPLGL--YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361
S+ N+ +G +D+E+ A E+ Q I P+ D+ V + G S G+RQ
Sbjct: 422 NRSIEDNIR-VGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRL 480
Query: 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVM 1421
+ R LLK IL+LDEA +++D T+A ++ + + T +AHR+ TV ++D ++
Sbjct: 481 AIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRIL 540
Query: 1422 VLSYGKLLE---YDEPSKLMETNSSFSKLV 1448
V G+++E +DE L+ F+ L+
Sbjct: 541 VFDNGRVVESGSFDE---LVARGGRFAALL 567
|
Length = 588 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 1e-36
Identities = 125/449 (27%), Positives = 202/449 (44%), Gaps = 41/449 (9%)
Query: 400 SLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVP--------FAKILQKCQSEFMIA 451
S L LFL + +L V ++LFL LL++P F + K + M A
Sbjct: 271 STILSLFLDMWILVIVGLFLVRQNMLLFL-LSLLSIPVYAVIIILFKRTFNKLNHDAMQA 329
Query: 452 QDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR----REKEFKWLSEAQLRKAYGTVIY 507
S E LN ++ IK + E + S I+S K FK+ Q ++A V
Sbjct: 330 NAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVT- 388
Query: 508 WMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFD 567
+ +++ G L L + T A L P+ I + +V+ +
Sbjct: 389 --KLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANN 446
Query: 568 RIN-AFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKI 626
R+N +L+D E N +R L + + I + ++S+ L ++L IK K
Sbjct: 447 RLNEVYLVDSEFINKK-KRTELNNLNGDIVINDVSYSYG--YGSNILSDISLTIKMNSKT 503
Query: 627 AVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGS 673
+ G G+GKS+L ++G SG + L G I Y+ Q +I SGS
Sbjct: 504 TIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGS 563
Query: 674 IRDNILYG-KPMDKARYDKAIKACAL---DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729
I +N+L G K D+ AC + DI N G TE+ + G ++SGGQKQRI
Sbjct: 564 ILENLLLGAKE--NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIA 621
Query: 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789
LARA+ D+ + + D+ S +D T + N + L+ KT+I V H++ + D+I+
Sbjct: 622 LARALLTDSKVLILDESTSNLDTITEKKIVNNLL--NLQDKTIIFVAHRLSVAKQSDKII 679
Query: 790 VLEGGQITQSGNYQELLLAGTAFEQLVNA 818
VL+ G+I + G++ ELL + L++
Sbjct: 680 VLDHGKIIEQGSHDELLDRNGFYASLIHN 708
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 3e-36
Identities = 136/567 (23%), Positives = 254/567 (44%), Gaps = 64/567 (11%)
Query: 915 LQAAATYWLAYAIQ--IPK-------ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLK 965
+ A +Y+L I IP I S LI Y + Y + F LG +
Sbjct: 171 ISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYI----IQQILSYIQIFLLNVLGQR 226
Query: 966 ASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGT---- 1021
S + +F+ PM FF + G I++R + SI+D A + T
Sbjct: 227 LSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIID----------ALASTILSL 276
Query: 1022 --ELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTT--KAPVMNYT 1077
++ ++ + F+ Q +++ + +++++ I R ++N V+N +
Sbjct: 277 FLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSS 336
Query: 1078 A-ETSQGVVTIRA-------FNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQ 1129
E G+ TI++ ++ +D F +YL S + ++A+
Sbjct: 337 IIEDLNGIETIKSLTSEAERYSKIDSEFGDYLN-----KSF---KYQKADQGQQAIKAVT 388
Query: 1130 NLTLFTAALFL--VLIPRGYVAPG-LVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVER 1186
L L L+ L+ RG + G L+ + ++ LT + ++ L ++ R
Sbjct: 389 KLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIIN-LQPKLQAARVANNR 447
Query: 1187 IKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRV 1246
+ + + E + K+ G I + + Y + +L I+ T ++
Sbjct: 448 LNEVYLVDSE---FINKKKRTELNNLNGDIVINDVSYSYGYGSN-ILSDISLTIKMNSKT 503
Query: 1247 GVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGS 1306
+VG +GSGK+TL L + G IL++G + + LR ++ +PQEP +F GS
Sbjct: 504 TIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGS 563
Query: 1307 VRTNLDPLGL---YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCL 1363
+ NL LG S DEIW A E ++K I ++P + +S+EG + S GQ+Q L
Sbjct: 564 ILENL-LLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIAL 622
Query: 1364 GRVLLKRNRILVLDEANASIDSATDAILQRIIRQ--EFSNCTVITVAHRVPTVIDSDMVM 1421
R LL +++L+LDE+ +++D+ T+ ++I+ + T+I VAHR+ SD ++
Sbjct: 623 ARALLTDSKVLILDESTSNLDTITE---KKIVNNLLNLQDKTIIFVAHRLSVAKQSDKII 679
Query: 1422 VLSYGKLLEYDEPSKLMETNSSFSKLV 1448
VL +GK++E +L++ N ++ L+
Sbjct: 680 VLDHGKIIEQGSHDELLDRNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 4e-36
Identities = 67/195 (34%), Positives = 105/195 (53%), Gaps = 15/195 (7%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL-------------Y 657
P LR V+ + +++A+ G GAGKS+LL +LG + G++ +
Sbjct: 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
IA+V Q ++ +G+I +NI +P A +A++ LD+ + G T IG+
Sbjct: 396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEG 455
Query: 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVT 776
G LSGGQ QR+ LARA DA + L D+P + +DA T A E + A + +TV+LVT
Sbjct: 456 GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEA-EVLEALRALAQGRTVLLVT 514
Query: 777 HQVEFLSEVDRILVL 791
H++ + DRI+VL
Sbjct: 515 HRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 6e-35
Identities = 83/289 (28%), Positives = 147/289 (50%), Gaps = 3/289 (1%)
Query: 287 LLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346
LL + + P+LL FV + + GL +V L +T++++S ++ S R G
Sbjct: 254 LLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCG 313
Query: 347 MRMRSALMVAVYQKQLKLS--SLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQ 404
++ RSAL +++K +S SL + +TG I+N ++ D R+ F + WS +
Sbjct: 314 LQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMV 373
Query: 405 LFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILN 464
L L+I +L +VG AL + + L+ LN K + + A D R+++T+E +
Sbjct: 374 LLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFS 433
Query: 465 NMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCAL 524
++I K +WE F + IE +R +E ++L + QL + + + +PT++ +V+F L
Sbjct: 434 GIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYL 493
Query: 525 TGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573
G L +F +A L + P MIP + ++Q VS RI+ FL
Sbjct: 494 LGHE-LTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFL 541
|
Length = 1560 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 5e-34
Identities = 132/590 (22%), Positives = 252/590 (42%), Gaps = 91/590 (15%)
Query: 280 IFIAICALL------RTIAVVVGPLLLYAFVNYSNRGEENLQE-GLSIVGCLIITKVVES 332
+ +A A++ T+A ++ PLL F R L L ++G L + + + S
Sbjct: 16 LVLAGVAMILVAATESTLAALLKPLLDDGF---GGRDRSVLWWVPLVVIG-LAVLRGICS 71
Query: 333 FTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYI----------A 382
F + S S +R + V +++K L L + TG +++ I A
Sbjct: 72 FVSTYLL--SWVSNKVVRD-IRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAA 128
Query: 383 VDAYR---------MGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLL 433
DA+ +G F + +W L L + +V+ + +L
Sbjct: 129 TDAFIVLVRETLTVIGLFIVLLYYSWQLTLIV------------------VVMLPVLSIL 170
Query: 434 NVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKL---QSWE-EKFKSLIESRREKE 489
+K L++ E + + E L +++KL Q++E +F ++ R
Sbjct: 171 MRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLA 230
Query: 490 FKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPV 549
K + ++ ++ V+F+ + L A + + ++ P+
Sbjct: 231 MK---MTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPL 287
Query: 550 RMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELA 609
+ + + M + + + + L D D R +++++ V+ + F + P
Sbjct: 288 KSLTNVNAPMQRGLAAAESLFTLL-DSPPEKDTGTR-AIERARGDVEFRNVTFRY-PGRD 344
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV-------------NL 656
P L ++L I+ + +A+ G G+GKS+L+ I SG + +L
Sbjct: 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404
Query: 657 YGSIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIG 714
+A VSQ + + +I +NI YG+ D+A ++A+ A ++ G T IG
Sbjct: 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC---VMAALEK-- 769
+ G+ LSGGQ+QR+ +ARA+ DA I + D+ SA+D NE V AALE+
Sbjct: 465 ENGVLLSGGQRQRLAIARALLKDAPILILDEATSALD--------NESERLVQAALERLM 516
Query: 770 --KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
+T +++ H++ + + DRI+V++ G+I + G + ELL + QL N
Sbjct: 517 QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHN 566
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 9e-33
Identities = 84/254 (33%), Positives = 138/254 (54%), Gaps = 8/254 (3%)
Query: 1201 VEDKRPPSSWP----FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256
V + P+ P KG +E R + + N+ + ++ G V +VG TG+GK
Sbjct: 316 VFQREEPADAPELPNVKGAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGK 374
Query: 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL 1316
TTLI+ L R+ +P G ILIDG+DI ++ + LR ++ + Q+ LF S+R N+ LG
Sbjct: 375 TTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIR-LGR 433
Query: 1317 --YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374
+D+E+++A + I N D+ V + G S G+RQ + R +LK IL
Sbjct: 434 EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPIL 493
Query: 1375 VLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEP 1434
VLDEA +++D T+A ++ I N T +AHR+ TV ++D+V+ L G+L+E
Sbjct: 494 VLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSF 553
Query: 1435 SKLMETNSSFSKLV 1448
+L++ + F KL+
Sbjct: 554 QELIQKDGRFYKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-32
Identities = 59/215 (27%), Positives = 93/215 (43%), Gaps = 44/215 (20%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ + RY P VL+ ++ + G + ++G +GSGK+TL + L+ P G +
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTI 1335
+DG DI +L + +PQ+ LF GS+ N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 1336 SSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRII 1395
S GQRQ L R L RILVLDE N+ +D + L + I
Sbjct: 97 -----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
Query: 1396 RQ-EFSNCTVITVAHRVPTVIDS-DMVMVLSYGKL 1428
+ + T I +AHR P + S D ++VL G++
Sbjct: 140 AALKAAGATRIVIAHR-PETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 2e-32
Identities = 82/261 (31%), Positives = 132/261 (50%), Gaps = 28/261 (10%)
Query: 565 SFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQ 624
++ RI A L + + D + + + V I++ + P+ P L VN +K Q
Sbjct: 286 AYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTY---PQTDHPALENVNFTLKPGQ 342
Query: 625 KIAVCGSVGAGKSSLLYAIL-------GEI-------PKISGTVNLYGSIAYVSQTSWIQ 670
+ +CG G+GKS+LL I G+I K+ + +A VSQT ++
Sbjct: 343 MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQ-LDSWRSRLAVVSQTPFLF 401
Query: 671 SGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729
S ++ +NI G+P + + + ++ DI G TE+G+RG+ LSGGQKQRI
Sbjct: 402 SDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRIS 461
Query: 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL----EKKTVILVTHQVEFLSEV 785
+ARA+ +A+I + DD SAVD T ++ L E +TVI+ H++ L+E
Sbjct: 462 IARALLLNAEILILDDALSAVDGRTEHQ-----ILHNLRQWGEGRTVIISAHRLSALTEA 516
Query: 786 DRILVLEGGQITQSGNYQELL 806
ILV++ G I Q GN+ +L
Sbjct: 517 SEILVMQHGHIAQRGNHDQLA 537
|
Length = 569 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 7e-32
Identities = 81/270 (30%), Positives = 131/270 (48%), Gaps = 19/270 (7%)
Query: 561 QVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620
Q ++ +R+ +L+ +L + ++ + F + P+ L +NLDI
Sbjct: 423 QTGIALERLGD-ILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSP-EVLSNLNLDI 480
Query: 621 KWAQKIAVCGSVGAGKSSL------LYA-------ILGEIPKISGTVNLYGSIAYVSQTS 667
K + I + G G+GKS+L LY + G I+ L + V Q +
Sbjct: 481 KPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQEN 540
Query: 668 WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726
+ S SIRDNI P A K I+ G TE+G++G NLSGGQ+Q
Sbjct: 541 VLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQ 600
Query: 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQVEFLSEV 785
RI +ARA+ + I +FD+ SA+D + A + M + + +TVI++ H++ +
Sbjct: 601 RIAIARALVGNPRILIFDEATSALDYESEALIMRN--MREICRGRTVIIIAHRLSTVRAC 658
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQL 815
DRI+VLE GQI +SG ++ELL + +L
Sbjct: 659 DRIIVLEKGQIAESGRHEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 1e-31
Identities = 60/222 (27%), Positives = 117/222 (52%), Gaps = 17/222 (7%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
++ + + + P L P L+ ++ IK +K+ + G G+GKSSLL A+ + SG+
Sbjct: 2 DIEFKNVSLRYRPNLP-PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACALD 699
+ + G I+ + Q + SG+IR N+ +G+ D+ + A++ L
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQ-ALERVGLK 119
Query: 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
+ + + G T + + G NLS GQ+Q + LARA+ + I + D+ ++VD T A +
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI- 178
Query: 760 NECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801
+ + A + TV+ + H+++ + + DRILVL+ G++ + +
Sbjct: 179 QKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 2e-31
Identities = 73/237 (30%), Positives = 126/237 (53%), Gaps = 17/237 (7%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
++ ++ NF++ P L G+NL ++ + +A+ G GAGKS+L +L SG +
Sbjct: 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALD 699
L G +A V Q + + S+ +NI YG+P D+ A A A
Sbjct: 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHA-H 456
Query: 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
+ I+ G T +G+RG+ LSGGQ+QRI +ARA+ DA I L D+ SA+DA + L
Sbjct: 457 EFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES-EQLV 515
Query: 760 NECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+ + ++ +T +++ H++ + + DRI+V++ G+I G + EL+ G + +L
Sbjct: 516 QQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLA 572
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 4e-31
Identities = 77/271 (28%), Positives = 138/271 (50%), Gaps = 14/271 (5%)
Query: 1185 ERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGT 1244
E + F+ P P +K S+ P IE L+I P+ + + T G
Sbjct: 322 ESLVTFLETPLAHPQ-QGEKELASNDPVT--IEAEDLEI-LSPDGKTLAGPLNFTLPAGQ 377
Query: 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304
R+ +VG +G+GKT+L++AL + P GS+ I+G+++ + + R LS + Q P L
Sbjct: 378 RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH 436
Query: 1305 GSVRTNLDPLG--LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362
G++R N+ LG SD+++ +ALE + + LP LD+ + D+ S GQ Q
Sbjct: 437 GTLRDNV-LLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLA 495
Query: 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMV 1422
L R LL+ ++L+LDE AS+D+ ++ ++ + + T + V H++ + D + V
Sbjct: 496 LARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWV 555
Query: 1423 LSYGKLLE---YDEPSKLMETNSSFSKLVAE 1450
+ G++++ Y E L + F+ L+A
Sbjct: 556 MQDGQIVQQGDYAE---LSQAGGLFATLLAH 583
|
Length = 588 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 2e-30
Identities = 71/237 (29%), Positives = 127/237 (53%), Gaps = 2/237 (0%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
KG IE R + Y L+ I G V +VGR+GSGK+T+ + L R + G
Sbjct: 339 KGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEG 398
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL--DPLGLYSDDEIWKALEKCQ 1330
IL+DG D+ L LR +++++ Q LF ++ N+ YS ++I +A
Sbjct: 399 EILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAY 458
Query: 1331 LKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAI 1390
I+ + N LD+ + + G S GQRQ + R LL+ + IL+LDEA +++D+ ++
Sbjct: 459 AMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518
Query: 1391 LQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 1447
+Q + + N T + +AHR+ T+ +D ++V+ G+++E ++L+ N +++L
Sbjct: 519 IQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQL 575
|
Length = 582 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-29
Identities = 127/515 (24%), Positives = 219/515 (42%), Gaps = 76/515 (14%)
Query: 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYI-AVDAYR--------------- 387
R RM ++L AV+ + L+L +++STG++ + + R
Sbjct: 202 RLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAMGISQIRRILSGSTLTTLLSGI 261
Query: 388 MGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQ 445
F+ +W LAL +A+ + + + L+ GLL V + L
Sbjct: 262 FALLNLGLMFYYSWKLAL---VAVALALVAIAV--------TLVLGLLQVRKERRLL--- 307
Query: 446 SEFMIAQDERLRS-TSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGT 504
++ T +++N + +++ E + + ++ K AQ + T
Sbjct: 308 -----ELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362
Query: 505 VIYWMSPTIISSVIFLGCA-LTGSAPLNA------STIFTVLATLRSMGEPVRMIPEALS 557
V + P + S+ +F L G A L+ +T F + ++ + + L+
Sbjct: 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFG--SFSGAVTQLSNTLISILA 420
Query: 558 IMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVN 617
++ ++R L L D + K ++++ F + P+ L V+
Sbjct: 421 VIPL----WERAKPIL--EALPEVDEAKTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVS 473
Query: 618 LDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-------------SIAYV 663
L I+ + +A+ G G+GKS+LL +LG E P+ SG+V G + V
Sbjct: 474 LQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE-SGSVFYDGQDLAGLDVQAVRRQLGVV 532
Query: 664 SQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
Q + SGSI +NI G P+ +A + L +DI G T I + G LSGG
Sbjct: 533 LQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGG 592
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEF 781
Q+QR+ +ARA+ I LFD+ SA+D T A V +LE K T I++ H++
Sbjct: 593 QRQRLLIARALVRKPRILLFDEATSALDNRTQAI-----VSESLERLKVTRIVIAHRLST 647
Query: 782 LSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+ DRI VL+ G++ Q G Y EL+ F QL
Sbjct: 648 IRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLA 682
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 4e-29
Identities = 105/439 (23%), Positives = 179/439 (40%), Gaps = 38/439 (8%)
Query: 1007 FDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRIN 1066
FD P+ +++ L IGI+ VLV A++ R ++ + A E I
Sbjct: 124 FDAPWMPIYLLVCFL-LHPWIGILALGGAVVLVG--LALLNNRATKKP-LKEATEA-SIR 178
Query: 1067 GTTKAPVMNYTAETSQGVVTIRAF-NMVDRFFQNYLKLVDIDASLFFHTNGVMEWL--IL 1123
A AE + + + RF YL S G++ L
Sbjct: 179 ANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSA----QSAASDRAGMLSNLSKYF 234
Query: 1124 RVEALQNLTLFTAALFLVLIPRGYVAPG-------LVGLSLSYAFTLTGTQVFLSRWYCY 1176
R+ LQ+L L A L G + PG LVG +L+ G W +
Sbjct: 235 RI-VLQSLVLGLGA---YLAIDGEITPGMMIAGSILVGRALAPIDGAIGG------WKQF 284
Query: 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGI 1236
+ +R+ + + P + P +G + + + I L+GI
Sbjct: 285 SGA-RQAYKRLNELLANYPSRDPAMPLPEP------EGHLSVENVTIVPPGGKKPTLRGI 337
Query: 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
+ + G + ++G +GSGK+TL + + P GS+ +DG D+ + + +
Sbjct: 338 SFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYL 397
Query: 1297 PQEPTLFRGSVRTNLDPLGLYSDDE-IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSA 1355
PQ+ LF G+V N+ G +D E I +A + + I LP+ D+ + G S
Sbjct: 398 PQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSG 457
Query: 1356 GQRQLFCLGRVLLKRNRILVLDEANASIDSATD-AILQRIIRQEFSNCTVITVAHRVPTV 1414
GQRQ L R L +++VLDE N+++D + A+ I + TV+ + HR +
Sbjct: 458 GQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL 517
Query: 1415 IDSDMVMVLSYGKLLEYDE 1433
D ++VL G++ + E
Sbjct: 518 GCVDKILVLQDGRIARFGE 536
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 8e-29
Identities = 77/262 (29%), Positives = 127/262 (48%), Gaps = 18/262 (6%)
Query: 559 MIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNL 618
+ ++ R+N L ++ + + L + + + ++ P PTLRG++
Sbjct: 284 FSGARQAYKRLNELLANYPSRDP---AMPLPEPEGHLSVENVTIV-PPGGKKPTLRGISF 339
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQ 665
++ + +A+ G G+GKS+L I+G P SG+V L G I Y+ Q
Sbjct: 340 SLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399
Query: 666 TSWIQSGSIRDNIL-YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724
+ G++ +NI +G+ D + +A K + + I G T IG G LSGGQ
Sbjct: 400 DVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQ 459
Query: 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784
+QRI LARA+Y D + + D+P S +D L N TV+++TH+ L
Sbjct: 460 RQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGC 519
Query: 785 VDRILVLEGGQITQSGNYQELL 806
VD+ILVL+ G+I + G E+L
Sbjct: 520 VDKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 9e-29
Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 15/218 (6%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
L ++L IK + + + G G+GKS+L I +G V + G
Sbjct: 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQ 77
Query: 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
+ V Q + + + SIRDNI P M R +A K I+ G T +G++G
Sbjct: 78 VGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGA 137
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LSGGQ+QRI +ARA+ ++ I +FD+ SA+D + + + +TVI++ H+
Sbjct: 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN-MHDICAGRTVIIIAHR 196
Query: 779 VEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+ + DRI+V+E G+I + G++ ELL + L
Sbjct: 197 LSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 9e-29
Identities = 66/241 (27%), Positives = 107/241 (44%), Gaps = 33/241 (13%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PA 1270
IELR L + Y LK I+ +G ++G +G GK+TL+ L RL + P
Sbjct: 1 IELRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1271 GGSILIDGVDICSMGLKD--LRVKLSIIPQEPTLFRGSVRTNLDPLGL----YSDDEIWK 1324
G +L+DG DI + + LR ++ ++ Q+P F GS+ N+ GL E
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVA-YGLRLHGIKLKEELD 117
Query: 1325 ALEKCQLKTTISSLPNKLDSSVSDE--GENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
+ L+ L V D S GQ+Q CL R L +L+LDE ++
Sbjct: 118 ERVEEALRKA------ALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171
Query: 1383 IDSATDAILQRIIRQEFSNCTVITVAH------RVPTVIDSDMVMVLSYGKLLEYDEPSK 1436
+D + A ++ +I + T++ V H RV +D L G+L+E+ +
Sbjct: 172 LDPISTAKIEELIAELKKEYTIVIVTHNMQQAARV-----ADRTAFLLNGRLVEFGPTEQ 226
Query: 1437 L 1437
+
Sbjct: 227 I 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 1e-28
Identities = 69/215 (32%), Positives = 112/215 (52%), Gaps = 14/215 (6%)
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658
P P L+G++ ++ + + + G G+GKS+L ++G P SG+V L G
Sbjct: 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWD 404
Query: 659 ------SIAYVSQTSWIQSGSIRDNIL-YGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
I Y+ Q + G+I +NI +G+ D + +A + + + I G T
Sbjct: 405 REQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDT 464
Query: 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKT 771
IG+ G LSGGQ+QRI LARA+Y D + + D+P S +D+ A L + A T
Sbjct: 465 RIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGT 524
Query: 772 VILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
V+++ H+ L+ VD+ILVL+ G+I G +E+L
Sbjct: 525 VVVIAHRPSALASVDKILVLQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-28
Identities = 103/455 (22%), Positives = 195/455 (42%), Gaps = 32/455 (7%)
Query: 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFL 407
R AL V VY++ + + GR++ G+++ + D + + + +AL +
Sbjct: 83 RSLGALRVRVYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVRVIVPAGVALVVGA 142
Query: 408 AIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQD--ERLRSTSEILNN 465
A V+ + A L L+ P + +E +A+ E ++ L+
Sbjct: 143 AAVAAIAVLSVPAALILAAGLLLAGFVAPLVSLRAARAAEQALARLRGELAAQLTDALDG 202
Query: 466 MKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALT 525
+ + +E + L+ A+ R A T + + + + LG
Sbjct: 203 AAELVASGALPAALAQVEEADRE----LTRAERRAAAATALGAALTLLAAGLAVLGALWA 258
Query: 526 GSAPLN----ASTIFTVLATLR-SMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN 580
G + A VL L + E +P A + +V+ + +RI +LD
Sbjct: 259 GGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVE-VLDAAGPV 317
Query: 581 DDV---RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637
+ ++ ++++++ + + A P L GV+LD+ +++A+ G G+GKS
Sbjct: 318 AEGSAPAAGAVGLGKPTLELRDLSAGYPG--APPVLDGVSLDLPPGERVAILGPSGSGKS 375
Query: 638 SLLYAILGEIPKISGTVNLYGS-------------IAYVSQTSWIQSGSIRDNILYGKP- 683
+LL + G + + G V L G ++ +Q + + ++R+N+ +P
Sbjct: 376 TLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPD 435
Query: 684 MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743
A++ L + G T +G+ G LSGG++QR+ LARA+ DA I L
Sbjct: 436 ATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLL 495
Query: 744 DDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
D+P +DA TA L E ++AAL +TV+L+TH
Sbjct: 496 DEPTEHLDAETADELL-EDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 7e-28
Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 45/201 (22%)
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655
+I+ +F + L V+L +K + +A+ G G+GKS+LL AI G + SG +
Sbjct: 1 EIENLSFRYG---GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 656 LYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
+ G + + +R I Y + Q
Sbjct: 58 IDGK-----DIAKLPLEELRRRIGY--------------------------------VPQ 80
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
LSGGQ+QR+ LARA+ + D+ L D+P S +D + L A E +TVI+V
Sbjct: 81 ----LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV 136
Query: 776 THQVEFLSEV-DRILVLEGGQ 795
TH E DR++VL+ G+
Sbjct: 137 THDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 7e-28
Identities = 71/208 (34%), Positives = 105/208 (50%), Gaps = 36/208 (17%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAY 662
P L V+ ++K + +A+ G GAGKS+LL AILG + SG++ ++G I Y
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGY 72
Query: 663 VSQTSWIQSG---SIRDNI---LYGKPMDKARYDKAIKAC---ALDKDINNFDHGDLTEI 713
V Q I S+RD + LYG R KA KA AL++ L+E+
Sbjct: 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALER-------VGLSEL 125
Query: 714 GQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--- 769
R + LSGGQ+QR+ LARA+ D D+ L D+PF+ VD T + L +
Sbjct: 126 ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDI-----YELLRELRR 180
Query: 770 --KTVILVTHQVEFLSE-VDRILVLEGG 794
T+++VTH + + E DR+L+L
Sbjct: 181 EGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 2e-27
Identities = 70/251 (27%), Positives = 120/251 (47%), Gaps = 10/251 (3%)
Query: 1186 RIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTR 1245
R+ + + P + P +G + + +L +LKGI+ G
Sbjct: 311 RLNELLAELPAAAERMPLPAP------QGALSVERLTAAPPGQKKPILKGISFALQAGEA 364
Query: 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG 1305
+G++G +GSGK+TL L + P GS+ +DG D+ + L + +PQ+ LF G
Sbjct: 365 LGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG 424
Query: 1306 SVRTNLDPLGLYSDDE-IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364
++ N+ G +D E + +A + I LP D+ + + G S GQRQ L
Sbjct: 425 TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALA 484
Query: 1365 RVLLKRNRILVLDEANASIDSATDAILQR-IIRQEFSNCTVITVAHRVPTVIDS-DMVMV 1422
R L ++VLDE N+++DS +A L I+ + TV+ +AHR P+ + S D ++V
Sbjct: 485 RALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR-PSALASVDKILV 543
Query: 1423 LSYGKLLEYDE 1433
L G++ +
Sbjct: 544 LQDGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 64/205 (31%), Positives = 98/205 (47%), Gaps = 41/205 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664
L ++L ++ + +A+ G G GKS+LL I G SG V + G YV
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79
Query: 665 QTS----WIQSGSIRDNILYG-------KPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
Q W+ ++ DN+ G K + R ++ ++ L N + H
Sbjct: 80 QQDALLPWL---TVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPH------ 130
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KT 771
LSGG +QR+ LARA+ D D+ L D+PFSA+DA T L E ++ + KT
Sbjct: 131 -----QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEE-LLDIWRETGKT 184
Query: 772 VILVTHQVE---FLSEVDRILVLEG 793
V+LVTH ++ FL+ DR++VL
Sbjct: 185 VLLVTHDIDEAVFLA--DRVVVLSA 207
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 3e-27
Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 52/212 (24%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS- 659
+FS+ PE L+ ++L++K +KIA+ G G+GKS+LL + G++ G + L G
Sbjct: 7 SFSY-PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVP 65
Query: 660 -----------IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHG 708
I+ ++Q ++ ++R+N+
Sbjct: 66 VSDLEKALSSLISVLNQRPYLFDTTLRNNL------------------------------ 95
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
G SGG++QR+ LAR + DA I L D+P +D T L + L+
Sbjct: 96 --------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SLIFEVLK 146
Query: 769 KKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
KT+I +TH + + +D+IL LE G+I G
Sbjct: 147 DKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 3e-27
Identities = 71/217 (32%), Positives = 112/217 (51%), Gaps = 29/217 (13%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SI 660
P L ++L ++ + A+ G GAGKS+LL AILG + SG + ++G I
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRI 77
Query: 661 AYVSQTSWIQSG---SIRDNIL---YGKPMDKARYDKAIKACALD--KDINNFDHGDLTE 712
YV Q S + +++D +L YGK R +K K + + + D D +
Sbjct: 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-RQ 136
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKK 770
IG+ LSGGQKQR+ LARA+ + D+ L D+PF+ VD +++ ++ L E K
Sbjct: 137 IGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD--LLKELRQEGK 190
Query: 771 TVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806
TV++VTH + + DR++ L I SG +E+L
Sbjct: 191 TVLMVTHDLGLVMAYFDRVICLNRHLIA-SGPPEEVL 226
|
Length = 254 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-27
Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 10/228 (4%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+R L +Y + L G++ G G++G G+GKTTL+ L L++P G IL
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTT 1334
+ G D+ +R ++ +PQEP+L+ +VR NL+ +A E+ +
Sbjct: 64 VLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRI 1394
+ L +K + V S G +Q + LL +L+LDE + +D + + +
Sbjct: 123 LFGLEDKANKKVRT----LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL 178
Query: 1395 IRQ--EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
+R+ + T++ H + + D V++L+ GK++ P +L E
Sbjct: 179 LRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226
|
Length = 293 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 9e-27
Identities = 118/454 (25%), Positives = 205/454 (45%), Gaps = 72/454 (15%)
Query: 394 WFHLTWSLALQLF---LAIGVLFGVV--GLGALPGLVLFLICGLLNVPFAKILQKCQSEF 448
+F +LAL L L + +L ++ LG PG L + V + LQ Q+E
Sbjct: 157 FFD--LTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQG-QAEL 213
Query: 449 MI-AQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES-RREKEFKWLSEAQLRKAYG--- 503
+ ++R R +L+ E++ + + RR+ LS+A + A G
Sbjct: 214 TLFGAEDRYRQ-----------QLEQTEQQ---WLAAQRRQANLTGLSQALMILANGLTV 259
Query: 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVK 563
++ W++ + L A +F LA ++ P + A + QV
Sbjct: 260 VLMLWLAAGGVGGN-------AQPGALIALFVFAALAAFEALM-P---VAGAFQHLGQVI 308
Query: 564 VSFDRINAFLL---DHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620
S RIN + + S+ + +F++ P+ P L+G++L I
Sbjct: 309 ASARRINEITEQKPEVTFPTTS----TAAADQVSLTLNNVSFTY-PDQPQPVLKGLSLQI 363
Query: 621 KWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT-------VNLYGSIAYVSQT 666
K +K+A+ G G GKS+LL + GEI ++G L +I+ VSQ
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI-LLNGQPIADYSEAALRQAISVVSQR 422
Query: 667 SWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
+ S ++RDN+L P + ++ L+K + + D G +G+ G LSGG++
Sbjct: 423 VHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQ 481
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVILVTHQVEF 781
+R+ +ARA+ +DA + L D+P +DA T ++ L + KTV+++TH++
Sbjct: 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQ-----ILELLAEHAQNKTVLMITHRLTG 536
Query: 782 LSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
L + DRI V++ GQI + G +QELL + QL
Sbjct: 537 LEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQL 570
|
Length = 574 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 62/218 (28%), Positives = 110/218 (50%), Gaps = 19/218 (8%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
VK Q F++ L+ V+ + + A+ G G+GKS+++ + G V
Sbjct: 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71
Query: 655 NLYGS-------------IAYVSQTSWIQSGSIRDNILYG---KPMDKARYDKAIKACAL 698
L G ++ V Q + + S++DNI YG + + + A KA A
Sbjct: 72 LLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVK-EAAQKAHA- 129
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
I+ G TE+G++G LSGGQKQR+ +ARA+ + + + D+ SA+DA + +
Sbjct: 130 HSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189
Query: 759 FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796
+ + E++TV+++ H++ + D+ILVL+GG+I
Sbjct: 190 -QQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-26
Identities = 72/228 (31%), Positives = 118/228 (51%), Gaps = 27/228 (11%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL--------GEIPKISG----TVNLYG 658
+ V+ + K Q +A+ G GAGKS+L+ +L G I I G TV
Sbjct: 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLI-NLLQRVFDPQSGRI-LIDGTDIRTVTRAS 406
Query: 659 ---SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALD---KDINNFDHGDL 710
+IA V Q + + + SI DNI G+P D+ A +A A D + + +D
Sbjct: 407 LRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYD---- 462
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
T +G+RG LSGG++QR+ +ARA+ D I + D+ SA+D T A + + ++ +
Sbjct: 463 TVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKV-KAALDELMKGR 521
Query: 771 TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
T ++ H++ + DRILV + G++ +SG++ EL+ G F L+ A
Sbjct: 522 TTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRA 569
|
Length = 588 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 31/215 (14%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN------ 655
FS+ P+ A P L ++L IK + + + G G+GKS+LL + G + SG V
Sbjct: 7 FSY-PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDL 65
Query: 656 -------LYGSIAYVSQ--TSWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDIN 703
L + V Q ++ + + +G + + ++ ++ +
Sbjct: 66 TKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE 125
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ LSGGQKQR+ +A + D DI L D+P + +D L +
Sbjct: 126 GLRD-------RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE--L 176
Query: 764 MAAL--EKKTVILVTHQVEFLSEV-DRILVLEGGQ 795
+ L E KT+I+VTH ++ L E+ DR++VLE G+
Sbjct: 177 LKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-26
Identities = 61/213 (28%), Positives = 86/213 (40%), Gaps = 58/213 (27%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E+ L RY L ++ T G V +VG GSGK+TL+ A+ L++P G ILI
Sbjct: 1 EIENLSFRY--GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 1277 DGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTIS 1336
DG DI + L++LR ++ +P QL
Sbjct: 59 DGKDIAKLPLEELRRRIGYVP--------------------------------QL----- 81
Query: 1337 SLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIR 1396
S GQRQ L R LL +L+LDE + +D A+ L ++R
Sbjct: 82 -----------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124
Query: 1397 QEF-SNCTVITVAHRVPTVID-SDMVMVLSYGK 1427
+ TVI V H +D V+VL GK
Sbjct: 125 ELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 6e-26
Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 34/242 (14%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
+E+ L Y +L ++ + +G G++G GSGK+TL+ L L++P G +
Sbjct: 2 MLEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEP-TLFRGSVR--------TNLDPLGLYSDDEIWKA 1325
L+DG DI S+ K+L KL+ +PQ P F +V +L G S ++
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 1326 LEKCQLKTT-ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
E L+ + L ++ +S G+RQ + R L + IL+LDE + +D
Sbjct: 120 EE--ALELLGLEHLADRPVDELSG-------GERQRVLIARALAQETPILLLDEPTSHLD 170
Query: 1385 SATDAILQRIIRQ--EFSNCTVITVAH------RVPTVIDSDMVMVLSYGKLLEYDEPSK 1436
A + ++R TV+ V H R +D +++L GK++ P +
Sbjct: 171 IAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY-----ADHLILLKDGKIVAQGTPEE 225
Query: 1437 LM 1438
++
Sbjct: 226 VL 227
|
Length = 258 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 7e-26
Identities = 60/204 (29%), Positives = 86/204 (42%), Gaps = 54/204 (26%)
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------ 659
P P LR V+ I+ + +A+ G G+GKS+L ILG + SG V L G+
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD 70
Query: 660 -------IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+ Y+ Q + SGSI +NIL
Sbjct: 71 PNELGDHVGYLPQDDELFSGSIAENIL--------------------------------- 97
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV 772
SGGQ+QR+ LARA+Y + I + D+P S +D L T
Sbjct: 98 --------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATR 149
Query: 773 ILVTHQVEFLSEVDRILVLEGGQI 796
I++ H+ E L+ DRILVLE G++
Sbjct: 150 IVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 7e-26
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 29/200 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVS 664
L +NL ++ + +A+ G G GKS+LL I G SG V L G I YV
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVF 78
Query: 665 QTS----WIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI--GQRGL 718
Q W+ ++ DN+ G ++ KA + + + Q
Sbjct: 79 QEDALLPWL---TVLDNVALG--LELRGKSKAEARERAKELLELVGLAGFEDKYPHQ--- 130
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTH 777
LSGG +QR+ +ARA+ + L D+PF A+DA T L +E + + +KTV+LVTH
Sbjct: 131 -LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTH 189
Query: 778 QVE---FLSEVDRILVLEGG 794
V+ +L+ DR++VL
Sbjct: 190 DVDEAVYLA--DRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 27/202 (13%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIA 661
L ++LD+ + IA+ G GAGK++L + G I + SG++ L G SI
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG 74
Query: 662 YVSQTSWIQ--SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
YV Q Q + S+R+ +L G K +A + KD++ + + + L+
Sbjct: 75 YVMQDVDYQLFTDSVREELLLG---LKELDAGNEQAETVLKDLDLYALKE-----RHPLS 126
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA---ATLFNECVMAALEKKTVILVT 776
LSGGQKQR+ +A A+ + D+ +FD+P S +D L E A + K VI++T
Sbjct: 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL---AAQGKAVIVIT 183
Query: 777 HQVEFLSEV-DRILVLEGGQIT 797
H EFL++V DR+L+L G I
Sbjct: 184 HDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-25
Identities = 117/485 (24%), Positives = 210/485 (43%), Gaps = 66/485 (13%)
Query: 371 KHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGAL----PGLVL 426
++ TGE+ + ++ D M + SL + + L V+ + LG + P L +
Sbjct: 254 ENKTGELTSRLSSDTQTMSR-------SLSLNVNVLLRNLVM-LLGLLGFMLWLSPRLTM 305
Query: 427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRST--------SEILNNMKIIKLQSWEE-- 476
L+N+P + +K + E L+ E L+ M+ ++ + EE
Sbjct: 306 VT---LINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGE 362
Query: 477 --KFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNAST 534
+FK +E + +A Y + I V++ G L + +++
Sbjct: 363 ASRFKEALEETLQL---NKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGN 419
Query: 535 IFTVLATLRSMGEPVRMIPEALSIMIQ-VKVS------FDRINAFLLDHELNNDDVRRIS 587
+ + L +GE VR++ S M+Q V S DR L L ++ +
Sbjct: 420 LVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGL- 478
Query: 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI 647
++ Q+ +FS+ +P L+G+ + + +A+ G G+GKS++ +
Sbjct: 479 -------IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY 531
Query: 648 PKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYG---KPMDKARYDK 691
G V L G +A V Q + SGS+R+NI YG P ++
Sbjct: 532 QPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIM--A 589
Query: 692 AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751
A KA I F +G TE+G++G LSGGQKQRI +ARA+ + + D+ SA+D
Sbjct: 590 AAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD 649
Query: 752 AHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811
A L + +TV+L+ H++ + D+ILVL+ G + + G +++L+
Sbjct: 650 AECEQLLQES---RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGC 706
Query: 812 FEQLV 816
++ LV
Sbjct: 707 YKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-25
Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 39/215 (18%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ + + Y VLK ++ +G ++ ++GR+GSGK+TL+ L ++P G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTI 1335
+DGV + + K L +S++ Q P LF ++R NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 1336 SSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRII 1395
G +S G+RQ L R+LL+ I++LDE +D T+ L +I
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141
Query: 1396 RQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLE 1430
+ + T+I + H + + D ++ L GK++
Sbjct: 142 FEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 3e-25
Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 39/219 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660
L GV+ +++ + + G GAGK++LL + G + SG + + G I
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80
Query: 661 AYVSQT----SWIQSGSIRDNI-----LYGKP--MDKARYDKAIKACALDKDINNFDHGD 709
YV Q + ++R+N+ LYG + R ++ ++ L+ N
Sbjct: 81 GYVPQEPSLYPEL---TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKK---- 133
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALE 768
+ LSGG KQR+ +A A+ +D ++ + D+P S +D + ++ +A
Sbjct: 134 ---VRT----LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEG 186
Query: 769 KKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T++L TH +E E+ DR+++L G+I G +EL
Sbjct: 187 GVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELK 225
|
Length = 293 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-24
Identities = 74/239 (30%), Positives = 127/239 (53%), Gaps = 24/239 (10%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSL------LYAIL-GEI 647
V+++ F + P L P + +L ++ Q++A+ G G+GKS++ LY GEI
Sbjct: 478 VELRNITFGYSP-LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEI 536
Query: 648 -----PK--ISGTVNLYGSIAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACALD 699
P+ I V L S+A V Q ++ G++RDN+ L+ + A +A K A+
Sbjct: 537 LFDGIPREEIPREV-LANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIH 595
Query: 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
I + G E+ + G NLSGGQ+QR+++ARA+ + I + D+ SA+D T
Sbjct: 596 DVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKI-- 653
Query: 760 NECVMAALEKK--TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
+ L ++ T I+V H++ + + D I+VLE G++ Q G ++EL G A+ +L+
Sbjct: 654 ---IDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 72/245 (29%), Positives = 114/245 (46%), Gaps = 25/245 (10%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
IE L RY LK ++ +G RV ++G GSGK+TL+ L L++P G +
Sbjct: 3 MIEAENLSFRYPGRKA-ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1275 LIDGVDICSM-GLKDLRVKLSIIPQEPT--LFRGSVRTNLD--PLGL-YSDDEIWK---- 1324
L+DG+D S L +LR K+ ++ Q P LF +V + L +EI +
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 1325 ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
ALE L+ + P L S GQ+Q + VL IL+LDE A +D
Sbjct: 122 ALELVGLEELLDRPPFNL-----------SGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 1385 -SATDAILQRIIR-QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMETN 1441
+L+ + + +E T+I V H + V++ +D V+VL GK+L +P+++
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
Query: 1442 SSFSK 1446
Sbjct: 231 ELLLA 235
|
Length = 235 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-24
Identities = 70/286 (24%), Positives = 132/286 (46%), Gaps = 19/286 (6%)
Query: 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKG 1235
+L I S RI + + P + ++ + + L + Y VLKG
Sbjct: 303 HLGQVIASARRINEITE---QKPEVTFPTTSTAAAD-QVSLTLNNVSFTYPDQPQPVLKG 358
Query: 1236 ITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295
++ G +V ++GRTG GK+TL+ L R +P G IL++G I LR +S+
Sbjct: 359 LSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISV 418
Query: 1296 IPQEPTLFRGSVRTNL---DPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGEN 1352
+ Q LF ++R NL P SD+ + + L++ L+ + L++ + + G
Sbjct: 419 VSQRVHLFSATLRDNLLLAAPNA--SDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQ 475
Query: 1353 WSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVP 1412
S G+++ + R LL +L+LDE +D+ T+ + ++ + N TV+ + HR+
Sbjct: 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRL- 534
Query: 1413 TVIDS-DMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYWSSCRR 1457
T ++ D + V+ G+++E +L+ Y+ +R
Sbjct: 535 TGLEQFDRICVMDNGQIIEQGTHQELLAQQ-------GRYYQLKQR 573
|
Length = 574 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 4e-24
Identities = 60/157 (38%), Positives = 100/157 (63%), Gaps = 5/157 (3%)
Query: 1272 GSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL--YSDDEIWKALEKC 1329
G IL+DGVDIC LKDLR SI+ QEP LF S+ N+ G + +++ +A +
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK-FGKEDATREDVKRACKFA 1335
Query: 1330 QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA 1389
+ I SLPNK D++V G++ S GQ+Q + R LL+ +IL+LDEA +S+DS ++
Sbjct: 1336 AIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEK 1395
Query: 1390 ILQRIIR--QEFSNCTVITVAHRVPTVIDSDMVMVLS 1424
++++ I ++ ++ T+IT+AHR+ ++ SD ++V +
Sbjct: 1396 LIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFN 1432
|
Length = 1466 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 6e-24
Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 42/217 (19%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658
+ L ++L ++ + +A+ G G GK++LL I G SG + + G
Sbjct: 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR 72
Query: 659 SIAYVSQT----SWIQSGSIRDNILYG-------KPMDKARYDKAIKACALDKDINNFDH 707
+I V Q + ++ +NI +G K +AR + ++ L+ +N + H
Sbjct: 73 NIGMVFQDYALFPHL---TVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH 129
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
LSGGQ+QR+ LARA+ + + L D+P SA+DA L E + L
Sbjct: 130 E-----------LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE--LKEL 176
Query: 768 EKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSG 800
+++ T I VTH Q E L+ DRI V+ G+I Q G
Sbjct: 177 QRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 9e-24
Identities = 83/266 (31%), Positives = 141/266 (53%), Gaps = 34/266 (12%)
Query: 573 LLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSV 632
+LD E D+ +R ++++ ++ + F++ P +P LR +N I + +A+ G
Sbjct: 321 ILDLEQEKDEGKR-VIERAKGDIEFRNVTFTY-PGKEVPALRNINFKIPAGKTVALVGRS 378
Query: 633 GAGKS---SLL---YAIL-GEIP---------KISGTVNLYGSIAYVSQTSWIQSGSIRD 676
G+GKS +LL Y I GEI ++ +L +A VSQ + + +I +
Sbjct: 379 GSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLA---SLRNQVALVSQNVHLFNDTIAN 435
Query: 677 NILYGKPMDKARYD--KAIK-ACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733
NI Y + +R +A + A A+D IN D+G T IG+ G+ LSGGQ+QRI +ARA
Sbjct: 436 NIAYARTEQYSREQIEEAARMAYAMDF-INKMDNGLDTVIGENGVLLSGGQRQRIAIARA 494
Query: 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVILVTHQVEFLSEVDRIL 789
+ D+ I + D+ SA+D T + AAL++ +T +++ H++ + + D IL
Sbjct: 495 LLRDSPILILDEATSALD-----TESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIL 549
Query: 790 VLEGGQITQSGNYQELLLAGTAFEQL 815
V+E G+I + G + ELL + QL
Sbjct: 550 VVEDGEIVERGTHAELLAQNGVYAQL 575
|
Length = 582 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 3e-23
Identities = 72/224 (32%), Positives = 108/224 (48%), Gaps = 26/224 (11%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
EL+ L Y A L I+ T +G V +VG GSGK+TL+ L L+ P G +L+
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 1277 DGVDICSMGLKDLRVKLSIIPQEPT--LFRGSVRT----NLDPLGLYSDDEIWK----AL 1326
DG D+ + LK+LR K+ ++ Q P F +V L+ LGL ++EI + AL
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-PEEEIEERVEEAL 119
Query: 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
E L+ P L S GQ+Q + VL IL+LDE A +D A
Sbjct: 120 ELVGLEGLRDRSPFTL-----------SGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 1387 TDAILQRIIRQEFSNC--TVITVAHRVPTVID-SDMVMVLSYGK 1427
L +++ + T+I V H + +++ +D V+VL GK
Sbjct: 169 GRRELLELLK-KLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 3e-23
Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 39/214 (18%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-SGTVNLYG---------- 658
+ L+GV+L I+ + +A+ G G+GKS+LL ILG + + SG V + G
Sbjct: 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLL-NILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 659 -------SIAYVSQT-SWIQSGSIRDNILYG-------KPMDKARYDKAIKACALDKDIN 703
I +V Q+ + + + +N+ K + R ++ ++ L +N
Sbjct: 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN 135
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE-C 762
++ LSGGQ+QR+ +ARA+ ND I L D+P +D+ T +
Sbjct: 136 HYPS-----------ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLR 184
Query: 763 VMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796
+ T+++VTH E DRI+ L G+I
Sbjct: 185 ELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 4e-23
Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 46/218 (21%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+EL+ + RY VL ++ G V ++G +GSGK+TL+ + L EP GSIL
Sbjct: 1 LELKNVSKRY--GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1276 IDGVDICSMG--LKDLRVKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLK 1332
IDG D+ + L LR ++ ++ Q+ LF +V N+ LGL
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENI-ALGL---------------- 101
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQ 1392
S GQ+Q L R L +L+LDE +++D T ++
Sbjct: 102 ---------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 1393 RIIRQEFSN--CTVITVAHRVPTVID-SDMVMVLSYGK 1427
+++ + TV+ V H + +D V+VL GK
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 5e-23
Identities = 56/245 (22%), Positives = 114/245 (46%), Gaps = 48/245 (19%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
+E++ L + + V L ++ + +G +G+VG +GSGK+TL A+ L++P GS
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1274 ILIDGVDICSMGLKDLRV---KLSIIPQEPTLFRGSVRTNLDPL---------------G 1315
I+ DG D+ + + ++ ++ ++ Q+P ++L+P
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP-------MSSLNPRMTIGEQIAEPLRIHGK 114
Query: 1316 LYSDDEIWKA--LEKCQL---KTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKR 1370
L + +A L + + ++ P++L S GQRQ + R L
Sbjct: 115 LSKKEARKEAVLLLLVGVGLPEEVLNRYPHEL-----------SGGQRQRVAIARALALN 163
Query: 1371 NRILVLDEANASIDSATDA-ILQRI--IRQEFSNCTVITVAHRVPTV-IDSDMVMVLSYG 1426
++L+ DE +++D + A IL + +++E T++ + H + V +D V V+ G
Sbjct: 164 PKLLIADEPTSALDVSVQAQILDLLKKLQEEL-GLTLLFITHDLGVVAKIADRVAVMYAG 222
Query: 1427 KLLEY 1431
K++E
Sbjct: 223 KIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 1e-22
Identities = 47/273 (17%), Positives = 94/273 (34%), Gaps = 8/273 (2%)
Query: 902 LCLGVLAQSGFVGLQAAATYWLAYAIQI-------PKITSGILIGVYAGVSTASAVFVYF 954
L + +L L + + + L + V + +
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIV 1014
+ LG + K F I PM FFD+ VG + +RL++D+S + + +
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 1015 FVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVM 1074
S ++ +M + W++ +V + + + + R+L R A
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 1075 NYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLF 1134
+ E+ G+ T++AF + + Y K ++ + + L+
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYA 240
Query: 1135 TAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGT 1166
A F L+ G ++ G V LS L+G
Sbjct: 241 LALWFGAYLVISGGLSVGTVFAFLSLGLQLSGP 273
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 2e-22
Identities = 51/273 (18%), Positives = 106/273 (38%), Gaps = 3/273 (1%)
Query: 280 IFIAICALLRTIAVVVGPLLLYAFVN-YSNRGEENLQEGLSIVGCLIITKVVESFTQRHC 338
+ + +L +V PLLL F++ + + +S+ LI V++ +
Sbjct: 2 LIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQGS 61
Query: 339 FFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLT 398
F+ R G R+R L A+ ++ L L +S GE+ + + D ++ +
Sbjct: 62 FYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGL 121
Query: 399 WSLALQLFLAIGVLFGVVGLGALPGLVLFL-ICGLLNVPFAKILQKCQSEFMIAQDERLR 457
+ +L + ++ G L+ L + LL+ AK L+K + A +
Sbjct: 122 FFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGS 181
Query: 458 STSEILNNMKIIKLQSWEEKFKSLI-ESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISS 516
E L+ ++ +K EE ++ + E + +A + +S +
Sbjct: 182 VAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYAL 241
Query: 517 VIFLGCALTGSAPLNASTIFTVLATLRSMGEPV 549
++ G L S L+ T+F L+ + P+
Sbjct: 242 ALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 2e-22
Identities = 54/204 (26%), Positives = 84/204 (41%), Gaps = 54/204 (26%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L ++L I+ + + + G GAGKS+LL + G + SG + L G
Sbjct: 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK 74
Query: 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
IAYV Q A++ L + R N
Sbjct: 75 IAYVPQ--------------------------ALELL------------GLAHLADRPFN 96
Query: 720 -LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTH 777
LSGG++QR+ LARA+ + I L D+P S +D L +A KTV++V H
Sbjct: 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156
Query: 778 QVEFLSEV-DRILVLEGGQITQSG 800
+ + DR+++L+ G+I G
Sbjct: 157 DLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 30/233 (12%)
Query: 1216 IELRQLKIRY---RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
IEL + + L ++ +G G++G +G+GK+TL+ + L P G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1273 SILIDGVDICSM---GLKDLRVKLSIIPQEPTLFRGSVRTNLD----PLGL--YSDDEIW 1323
S+ +DG D+ ++ L+ LR K+ +I Q L S RT + PL L EI
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL--SSRTVFENVAFPLELAGVPKAEIK 119
Query: 1324 -KALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
+ E +L L +K D + S GQ+Q + R L +IL+ DEA ++
Sbjct: 120 QRVAELLEL----VGLSDKADRYPA----QLSGGQKQRVAIARALANNPKILLCDEATSA 171
Query: 1383 IDSA-TDAILQRI--IRQEFSNCTVITVAHRVPTVIDS--DMVMVLSYGKLLE 1430
+D T +IL+ + I +E T++ + H V+ D V VL G+L+E
Sbjct: 172 LDPETTQSILELLKDINREL-GLTIVLITHE-MEVVKRICDRVAVLDQGRLVE 222
|
Length = 339 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 3e-22
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 47/226 (20%)
Query: 613 LRGVNLDIKWAQKI-AVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQT 666
L+ ++LDI +I A+ G G GKS+LL + L G V L G Y
Sbjct: 16 LKDISLDIP-KGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 667 SWIQ---------------SGSIRDNILYG------KPMD--KARYDKAIKACALDKDIN 703
++ GSI DN+ YG K + R ++A++ AL ++
Sbjct: 75 DVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVK 134
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ H L LSGGQ+QR+ LARA+ N+ ++ L D+P SA+D + A + E +
Sbjct: 135 DRLHA---------LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI--EEL 183
Query: 764 MAALEKK-TVILVTH---QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+A L+K+ T+++VTH Q ++ DR L G++ + G +++
Sbjct: 184 IAELKKEYTIVIVTHNMQQAARVA--DRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 3e-22
Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 32/247 (12%)
Query: 1215 RIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
+ +R L I Y A L ++ G +G+VG +GSGK+TL L L +P+ G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1273 SILIDGVDICSMG-LKDLRVKLSIIPQEPTL-------FRGSVRTNLDPLGLY-SDDEIW 1323
SIL+DG + K + ++ Q+P + L P GL S I
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIA 122
Query: 1324 KALEKCQLKTTI-SSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
+ L++ L + P++L S GQRQ + R L+ ++L+LDE ++
Sbjct: 123 ELLDQVGLPPSFLDRRPHEL-----------SGGQRQRIAIARALIPEPKLLILDEPTSA 171
Query: 1383 IDSATDA----ILQRIIRQEFSNCTVITVAHRVPTVID--SDMVMVLSYGKLLEYDEPSK 1436
+D + A +L + ++ T + ++H + +++ D + V+ G+++E +
Sbjct: 172 LDVSVQAQILNLLLELKKER--GLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPTEE 228
Query: 1437 LMETNSS 1443
L+ S
Sbjct: 229 LLSHPSH 235
|
Length = 252 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 3e-22
Identities = 69/240 (28%), Positives = 110/240 (45%), Gaps = 28/240 (11%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IELR L + VLKG+ G + ++G +GSGK+TL+ + L+ P G +L
Sbjct: 1 IELRGLTKSFGGRT--VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1276 IDGVDICSMG---LKDLRVKLSIIPQEPTLFRG-SVRTNLD-PL---GLYSDDEIWK-AL 1326
IDG DI + L LR ++ ++ Q LF +V N+ PL S++EI + L
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 1327 EKCQ---LKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASI 1383
EK + L+ P +L S G ++ L R L +L+ DE A +
Sbjct: 119 EKLEAVGLRGAEDLYPAEL-----------SGGMKKRVALARALALDPELLLYDEPTAGL 167
Query: 1384 DSATDAILQRIIR--QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440
D ++ +IR ++ T I V H + T +D + VL GK++ P +L +
Sbjct: 168 DPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 4e-22
Identities = 80/290 (27%), Positives = 122/290 (42%), Gaps = 46/290 (15%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------- 659
+ L+ VNLDI+ + + + G G GKS+LL I G SG + + G
Sbjct: 15 SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK 74
Query: 660 --IAYVSQT-SWIQSGSIRDNILYG---KPMDKARYDKAI----KACALDKDINNFDHGD 709
IA V Q + ++ +NI +G + + KA DK + K L+ +N
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR----- 129
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE-CVMAALE 768
+ L LSGGQ+QR+ LARA+ ++L D+P S +DA + +E +
Sbjct: 130 ------KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL 183
Query: 769 KKTVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQELL----------LAGTAFEQLVN 817
T I VTH QVE ++ DRI+V+ G+I Q G EL G+ +
Sbjct: 184 GTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFIGSPPMNFLK 243
Query: 818 AHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISV 867
A A + + E+V G RPE + G + V
Sbjct: 244 AEVKADGNGLSIPEDKKVALEQVILG--IRPE--HISLSASGIILGTVEV 289
|
Length = 338 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 6e-22
Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 24/185 (12%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L V+L+I+ + +A+ G G+GKS+LL I G SG++ + G +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGE---DLTDLEDELP 72
Query: 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
+R I + +D F H LT + L LSGGQ+QR+ LAR
Sbjct: 73 PLRRRIGM-----------------VFQDFALFPH--LTVLENIALGLSGGQQQRVALAR 113
Query: 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTHQVEFLSEV-DRILV 790
A+ D D+ L D+P SA+D T + + A TV+LVTH ++ + + DR++V
Sbjct: 114 ALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVV 173
Query: 791 LEGGQ 795
L G+
Sbjct: 174 LRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 6e-22
Identities = 66/230 (28%), Positives = 113/230 (49%), Gaps = 20/230 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I++ + Y + LK ++ +EG V ++G GSGK+T+ L L++P G I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEP-TLFRGSVRTNLDPLGLYSDDEIWKALE-KC---- 1329
IDG+ I LK++R K+ II Q P F +G +D+I LE K
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQF----------IGATVEDDIAFGLENKKVPPK 117
Query: 1330 QLKTTISSLPNK--LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSAT 1387
++K I L K ++ + E +N S GQ+Q + VL I++ DE+ + +D
Sbjct: 118 KMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKG 177
Query: 1388 DAILQRIIR--QEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPS 1435
+++I+ ++ T+I++ H + I +D V+V S GKL+ +P
Sbjct: 178 KREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPK 227
|
Length = 271 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 94.0 bits (235), Expect = 7e-22
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 58/224 (25%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E+ L + Y VL ++ + G VG++G G+GK+TL+ L L++P+ G IL+
Sbjct: 1 EVENLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Query: 1277 DGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTIS 1336
DG D+ S+ K+L K++ +PQ ALE ++
Sbjct: 59 DGKDLASLSPKELARKIAYVPQ--------------------------ALELLG----LA 88
Query: 1337 SLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID----SATDAILQ 1392
L ++ + +S G+RQ L R L + IL+LDE + +D +L+
Sbjct: 89 HLADRPFNELSG-------GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLR 141
Query: 1393 RIIRQEFSNCTVITVAHRVPTVID-------SDMVMVLSYGKLL 1429
R+ R+ TV+ V H D +D V++L G+++
Sbjct: 142 RLARER--GKTVVMVLH------DLNLAARYADRVILLKDGRIV 177
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 9e-22
Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 19/203 (9%)
Query: 1229 APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD 1288
LK I +G V +VG GSGK++L+SAL +E GS+ + G
Sbjct: 17 TSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---------- 66
Query: 1289 LRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIW--KALEKCQLKTTISSLPNKLDSSV 1346
++ + QEP + G++R N+ L DE K ++ C L+ + LP+ + +
Sbjct: 67 ---SIAYVSQEPWIQNGTIRENI--LFGKPFDEERYEKVIKACALEPDLEILPDGDLTEI 121
Query: 1347 SDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSAT-DAILQRIIRQEFSNC-TV 1404
++G N S GQ+Q L R + I +LD+ +++D+ I + I N T
Sbjct: 122 GEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTR 181
Query: 1405 ITVAHRVPTVIDSDMVMVLSYGK 1427
I V H++ + +D ++VL G+
Sbjct: 182 ILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 2e-21
Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 25/225 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-------LGEIPKISG----TVN---LYG 658
+ V+ + K Q +A+ G GAGK++L+ + +G+I I G TV L
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI-LIDGIDINTVTRESLRK 409
Query: 659 SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACA---LDKDINNFDHGDLTEI 713
SIA V Q + + + SIR+NI G+ D+ Y+ A A A + K N +D T +
Sbjct: 410 SIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYD----TLV 465
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVI 773
G+RG LSGG++QR+ +ARA+ +A I + D+ SA+D T A + N + A + +T
Sbjct: 466 GERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKN-AIDALRKNRTTF 524
Query: 774 LVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
++ H++ + D +L L+ G++ + G++QEL+ F +L+
Sbjct: 525 IIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRR 569
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 2e-21
Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 44/233 (18%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-- 659
F + A L+ V+L+I+ +++ + G G+GKS+LL + G + SG V + G
Sbjct: 11 FRYPGRKAA--LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDT 68
Query: 660 ------------IAYVSQ---TSWIQSGSIRDNILYG-------KPMDKARYDKAIKACA 697
+ V Q ++ D + +G + + R +A++
Sbjct: 69 SSEKSLLELRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVG 127
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD---AHT 754
L++ ++ NLSGGQKQR+ +A + +I L D+P + +D
Sbjct: 128 LEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176
Query: 755 AATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
L + + KT+I+VTH +E + E DR++VL+ G+I G+ E+
Sbjct: 177 LLELLKK--LKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF 227
|
Length = 235 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-21
Identities = 73/243 (30%), Positives = 110/243 (45%), Gaps = 33/243 (13%)
Query: 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKIS 651
S++I + A L ++LDIK + +A+ G GAGKS+LL I G E P +
Sbjct: 1 MSIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD-A 56
Query: 652 GTVNLYGS--------------IAYVSQT-SWIQSGSIRDNILYGKPMDKARYDKA-IKA 695
G + L G + +V Q + ++ DNI +G + K R +A I+A
Sbjct: 57 GRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRA 116
Query: 696 CALDKDINNFDHGDLTEIGQR-GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754
+ L + R LSGGQ+QR+ LARA+ + + L D+PF A+DA
Sbjct: 117 RVEEL----LRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 172
Query: 755 AATLFNECVMAAL---EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLA-G 809
L + L T + VTH E E+ DR++VL G+I Q G E+
Sbjct: 173 RKEL--RRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPA 230
Query: 810 TAF 812
+ F
Sbjct: 231 SRF 233
|
Length = 345 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 3e-21
Identities = 61/240 (25%), Positives = 113/240 (47%), Gaps = 38/240 (15%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
+EL+ ++ + + VLK + +G V ++G +G GK+TL+ + L EP G I
Sbjct: 3 ELELKNVRKSF--GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNLD-PLGLY--SDDEI-WK---AL 1326
LIDG D+ + + R ++++ Q L+ +V N+ L L EI +
Sbjct: 61 LIDGRDVTDLPPEK-R-GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
+ L+ ++ P +L S GQRQ L R L+++ ++ +LDE +++
Sbjct: 119 KLLGLEHLLNRKPLQL-----------SGGQRQRVALARALVRKPKVFLLDEPLSNL--- 164
Query: 1387 TDAILQRIIRQEFSN------CTVITVAHRVP---TVIDSDMVMVLSYGKLLEYDEPSKL 1437
DA L+ ++R E T I V H T+ +D ++V++ G++ + P +L
Sbjct: 165 -DAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTL--ADRIVVMNDGRIQQVGTPLEL 221
|
Length = 338 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 3e-21
Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 12/221 (5%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E+ ++ Y +LK I+ F G +VG +G+GK+TLI + RL++P GSILI
Sbjct: 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62
Query: 1277 DGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTIS 1336
DGVDI ++ + DLR K+ ++ Q+P LF G+V+ N++ G + K + ++ +S
Sbjct: 63 DGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIE-YG-----PMLKGEKNVDVEYYLS 116
Query: 1337 SLPNKLDSSVSDEG-ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRII 1395
+ L+ + +N S G+ Q + R L +L+LDE +++D + I++ +I
Sbjct: 117 IV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELI 174
Query: 1396 R--QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDE 1433
+ N TVI + H + D L+ G L+EY +
Sbjct: 175 VKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAK 215
|
Length = 241 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 3e-21
Identities = 69/278 (24%), Positives = 117/278 (42%), Gaps = 51/278 (18%)
Query: 1198 PAIVEDKRPPSSWPFKGRIE----LRQLKIRYRP---------NAPLVLKGITCTFSEGT 1244
P + ++K R E +R L RY + ++ EG
Sbjct: 259 PRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGE 318
Query: 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG--VDICSMGLKDLRVKLSIIPQEPTL 1302
+G+VG +GSGK+TL L L+ P+ GSI+ DG +D+ L+ LR ++ ++ Q+P
Sbjct: 319 TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378
Query: 1303 F---RGSVRTNL-DPLGLYSDDE-------IWKALEKCQLKTTI-SSLPNKLDSSVSDEG 1350
R +V L +PL ++ + + LE L P++L
Sbjct: 379 SLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHEL-------- 430
Query: 1351 ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQR-------IIRQEFSNCT 1403
S GQRQ + R L ++L+LDE SA D +Q +++E T
Sbjct: 431 ---SGGQRQRVAIARALALEPKLLILDEPV----SALDVSVQAQVLNLLKDLQEEL-GLT 482
Query: 1404 VITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440
+ ++H + V +D V V+ G+++E K+ E
Sbjct: 483 YLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 4e-21
Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 32/213 (15%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-SGTVNLYGS--------- 659
+ L+ VNL+I+ + +A+ G G+GKS+LL +LG + K SG V + G
Sbjct: 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLTKLSEKE 76
Query: 660 --------IAYVSQT-SWIQSGSIRDNI----LYGKPMDKARYDKAIKACALDKDINNFD 706
I +V Q + + ++ +N+ L R A + L + + D
Sbjct: 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEE---LLEVLGLED 133
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MA 765
+ + LSGGQ+QR+ +ARA+ N+ I L D+P +D+ TA + +
Sbjct: 134 RLLKKKPSE----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN 189
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798
KT+I+VTH E DR++ L+ G+I +
Sbjct: 190 KERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 5e-21
Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 21/230 (9%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV------- 654
F++DP I L G++ I + +A+ G GAGKS++L + SG++
Sbjct: 270 FAYDPRRPI--LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDI 327
Query: 655 ------NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYD---KAIKACALDKDINNF 705
+L +I V Q + + + +I NI YG+P A + A +A + I +
Sbjct: 328 RDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP--DATAEEVGAAAEAAQIHDFIQSL 385
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
G T +G+RGL LSGG+KQR+ +AR + + I + D+ SA+D HT +
Sbjct: 386 PEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQ-AIQAALRE 444
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+T +++ H++ + + D I+VL+ G+I + G ++ELL AG + ++
Sbjct: 445 VSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 6e-21
Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 16/247 (6%)
Query: 1186 RIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIR---YRPNAPLVLKGITCTFSE 1242
RI+ + E P + + P GR EL + IR Y L+ + T
Sbjct: 289 RIRAMLA---EAPVVKDGSEPVPE----GRGEL-DVNIRQFTYPQTDHPALENVNFTLKP 340
Query: 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302
G +G+ G TGSGK+TL+S + R + + G I + + + L R +L+++ Q P L
Sbjct: 341 GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400
Query: 1303 FRGSVRTNLDPLGL--YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360
F +V N+ LG + EI + I LP D+ V + G S GQ+Q
Sbjct: 401 FSDTVANNI-ALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQR 459
Query: 1361 FCLGRVLLKRNRILVLDEANASIDSATD-AILQRIIRQEFSNCTVITVAHRVPTVIDSDM 1419
+ R LL IL+LD+A +++D T+ IL +RQ TVI AHR+ + ++
Sbjct: 460 ISIARALLLNAEILILDDALSAVDGRTEHQILHN-LRQWGEGRTVIISAHRLSALTEASE 518
Query: 1420 VMVLSYG 1426
++V+ +G
Sbjct: 519 ILVMQHG 525
|
Length = 569 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 6e-21
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 28/213 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-----------IA 661
L+ V+L+++ + G G+GKS LL I G I SG + L G I+
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74
Query: 662 YVSQT-SWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
YV Q + ++ NI YG + +DK ++ + A I++ + ++
Sbjct: 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-------RKP 127
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVIL 774
LSGG++QR+ +ARA+ + I L D+PFSA+D T L E + + K+ TV+
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREE--LKKIRKEFGVTVLH 185
Query: 775 VTH-QVEFLSEVDRILVLEGGQITQSGNYQELL 806
VTH E + D++ ++ G++ Q G +E+
Sbjct: 186 VTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 1e-20
Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 37/217 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-----------SI 660
+ ++LDIK + + + G G GK++LL I G E P SG + L G I
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS-SGEILLDGEDITDVPPEKRPI 79
Query: 661 AYVSQTSWIQSG------SIRDNILYGKPMDKARYDKAIKACALD--KDINNFDHGDLTE 712
V QS ++ +N+ +G + K IKA + + + D
Sbjct: 80 GMV-----FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD--- 131
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-- 770
++ LSGGQ+QR+ LARA+ + + L D+P SA+DA + E + L+++
Sbjct: 132 --RKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKE--LKELQRELG 187
Query: 771 -TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
T + VTH Q E L+ DRI V+ G+I Q G +E+
Sbjct: 188 ITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 3e-20
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 40/224 (17%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659
P L ++ I + + G G+GKS+LL + G + SG V L G
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75
Query: 660 --IAYVSQTSWIQSG-SIRDNILYG-----------KPMDKARYDKAIKACALDKDINNF 705
+AYV Q+ G ++ + +L G D+ ++A++
Sbjct: 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELL--------- 126
Query: 706 DHGDLTEIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV- 763
L + R ++ LSGG++QR+ +ARA+ + I L D+P S +D +
Sbjct: 127 ---GLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183
Query: 764 MAALEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELL 806
+ + TV++V H + D +++L+ G+I G +E+L
Sbjct: 184 LNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 89.4 bits (223), Expect = 3e-20
Identities = 44/185 (23%), Positives = 86/185 (46%), Gaps = 28/185 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L ++L ++ + + G GAGK++L+ ILG + SG + + G + +
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG------KDIKKEPE 69
Query: 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
++ I Y ++ L +++ ++ L LSGG KQR+ LA+
Sbjct: 70 EVKRRIGY--LPEEPS---------LYENLTVREN----------LKLSGGMKQRLALAQ 108
Query: 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVL 791
A+ +D ++ + D+P S +D + + E KT++L +H +E + DR+ +L
Sbjct: 109 ALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAIL 168
Query: 792 EGGQI 796
G+I
Sbjct: 169 NNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 3e-20
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 27/214 (12%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+ L Y PN LK ++ + + G V ++G +G+GK+TL+ L LVEP GS+L
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 1276 IDGVDICSMG---LKDLRVKLSIIPQEPTLF-RGSVRTNL------------DPLGLYSD 1319
IDG DI + L+ LR ++ +I Q+ L R SV N+ GL+
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 1320 DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEA 1379
+E +AL + + + S GQ+Q + R L+++ ++++ DE
Sbjct: 120 EEKQRALA-ALERVGLLDKAYQRAD-------QLSGGQQQRVAIARALMQQPKLILADEP 171
Query: 1380 NASIDSATDAILQRIIRQ--EFSNCTVITVAHRV 1411
AS+D A+ + ++++ TVI H+V
Sbjct: 172 VASLDPASSRQVMDLLKRINREEGITVIVSLHQV 205
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 4e-20
Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 44/240 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWI-- 669
L GV+LD+ + +A+ G G+GKS+LL ILG + G + + G I +S+
Sbjct: 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83
Query: 670 --------QSG------SIRDNILYGKPM-DKARYDKA-IKACALDKDINNFDHGDLTEI 713
Q G ++ +N+ + P+ + + ++ I+ L K L +
Sbjct: 84 RKRMGVLFQQGALFSSLTVFENVAF--PLREHTKLPESLIRELVLMK---------LELV 132
Query: 714 GQRGLN-------LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM-- 764
G RG LSGG ++R+ LARA+ D ++ D+P S +D +A + +E +
Sbjct: 133 GLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG-VIDELIREL 191
Query: 765 -AALEKKTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELLLAGTAF-EQLVNAHRD 821
AL TVI+VTH + L+ DR+ VL G++ G +ELL + + Q N RD
Sbjct: 192 NDALG-LTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFFNGIRD 250
|
Length = 263 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 7e-20
Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 41/248 (16%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+ L + Y VL+ I+ + +G ++G G+GK+TL+ A+ L++P+ G I
Sbjct: 5 IEVENLTVSY--GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 1276 IDGVDICSMGLKDLRV-----KLSIIPQEP-------TLFRGSVRTNLDPLGLYSDDEIW 1323
I G + K LR+ K S+ P L R + L +++
Sbjct: 63 IFGKPV-RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVD 121
Query: 1324 KALEKCQL----KTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEA 1379
+ALE+ + I L S GQ+Q L R L + +L+LDE
Sbjct: 122 EALERVGMEDLRDRQIGEL---------------SGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 1380 NASIDSATDAILQRIIRQEFS-NCTVITVAHRVPTVID-SDMVMVL-----SYGKLLEYD 1432
+D A + ++++ TV+ V H + V+ D V+ L + G E
Sbjct: 167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVL 226
Query: 1433 EPSKLMET 1440
L +
Sbjct: 227 TEENLEKA 234
|
Length = 254 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 7e-20
Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 35/226 (15%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
+E+ + + VL+ I + +G V ++G +G GK+TL+ + L +P G
Sbjct: 1 MALLEIEGVSKSFGGVE--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG 58
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLF--RGSVRTN----LDPLGLYSDDEIWKA- 1325
+L+DG + + + QE L +V N L+ G + +A
Sbjct: 59 EVLLDG-----RPVTGPGPDIGYVFQEDALLPWL-TVLDNVALGLELRGKSKAEARERAK 112
Query: 1326 --LEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASI 1383
LE L P++L S G RQ + R L R ++L+LDE ++
Sbjct: 113 ELLELVGLAGFEDKYPHQL-----------SGGMRQRVAIARALATRPKLLLLDEPFGAL 161
Query: 1384 DSATDAILQ----RIIRQEFSNCTVITVAHRVPTVID-SDMVMVLS 1424
D+ T LQ R+ + TV+ V H V + +D V+VLS
Sbjct: 162 DALTREELQDELLRLWEET--RKTVLLVTHDVDEAVYLADRVVVLS 205
|
Length = 248 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 8e-20
Identities = 68/220 (30%), Positives = 100/220 (45%), Gaps = 38/220 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
+ VNL I+ + + + G G+GK++ L I I SG + + G
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK 76
Query: 660 IAYVSQTSWIQSG-----SIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLT 711
I YV Q Q G ++ +NI + DK R K + D +
Sbjct: 77 IGYVIQ----QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGL------DPS 126
Query: 712 EIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK- 769
E R + LSGGQ+QR+ +ARA+ D I L D+PF A+D T L E + L+K
Sbjct: 127 EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEE--IKELQKE 184
Query: 770 --KTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
KT++ VTH + E L DRI V++ G+I Q E+L
Sbjct: 185 LGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224
|
Length = 309 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 8e-20
Identities = 67/238 (28%), Positives = 117/238 (49%), Gaps = 25/238 (10%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE++ L Y P LK + ++G V ++G +G+GK+TL+ +L LV+P G IL
Sbjct: 4 IEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 1276 IDGVDICSM---GLKDLRVKLSIIPQEPTLF-RGSVRTNLDPLGLYSDDEIWKAL----E 1327
+GV I + L+ LR + +I Q+ L R SV N+ LG W++L
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENV-LLGRLGYTSTWRSLFGLFS 121
Query: 1328 KCQLKTTISSLPNKLDSSVSD----EGENWSAGQRQLFCLGRVLLKRNRILVLDEANASI 1383
K + +L ++ + D S GQ+Q + R L+++ +I++ DE AS+
Sbjct: 122 KEDKAQALDAL-ERVG--ILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASL 178
Query: 1384 DSATD----AILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436
D + IL+ I +++ TVI H+V +D ++ L G+++ +D P+
Sbjct: 179 DPESAKKVMDILKDINQED--GITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPAS 233
|
Length = 258 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-19
Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 48/227 (21%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-------LGEIPKISGT-------VNL 656
+ +NL+I + + + G G+GK++ + I GEI I G V L
Sbjct: 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI-FIDGEDIREQDPVEL 73
Query: 657 YGSIAYVSQTSWIQSG-----SIRDNIL-------YGKPMDKARYDKAIKACALDKDINN 704
I YV Q Q G ++ +NI + K + R D+ + LD
Sbjct: 74 RRKIGYVIQ----QIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---- 125
Query: 705 FDHGDLTEIGQR-GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
E R LSGGQ+QR+ +ARA+ D + L D+PF A+D T L E
Sbjct: 126 ------AEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEE-- 177
Query: 764 MAALEK---KTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
L++ KT++ VTH + E DRI +++ G+I Q G E+L
Sbjct: 178 FKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 1e-19
Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 40/211 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSIAYVSQTSWIQS 671
L+G++L +K + + + G G+GKS+LL I E P SGT+ + G + + +
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD-SGTIIIDGLKLTDDKKNINE- 73
Query: 672 GSIR-------------------DNILYG----KPMDKARYDKAIKACALDKDINNFDHG 708
+R +NI K M KA ++ +A L + + D
Sbjct: 74 --LRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE--RALELLEKVGLADKA 129
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL- 767
D LSGGQ+QR+ +ARA+ + + LFD+P SA+D + + VM L
Sbjct: 130 D-----AYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLD--VMKDLA 182
Query: 768 -EKKTVILVTHQVEFLSEV-DRILVLEGGQI 796
E T+++VTH++ F EV DR++ ++ G+I
Sbjct: 183 EEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 86.7 bits (216), Expect = 2e-19
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 46/216 (21%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+R L RY L I+ T +G G++G G+GKTTLI + L++P G I
Sbjct: 1 IEVRNLSKRYGKKT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTT 1334
+ G DI ++++ ++ +P+EP+L+ +VR NL
Sbjct: 59 VLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRI 1394
S G +Q L + LL +L+LDE + +D + +
Sbjct: 96 ------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 1395 IRQE-FSNCTVITVAHRVPTVID-SDMVMVLSYGKL 1428
+R+ T++ +H + D V +L+ G++
Sbjct: 138 LRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 2e-19
Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 24/206 (11%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SI 660
L +NLDI + + + G G GK++ L I G SG + + G I
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDI 74
Query: 661 AYVSQT-SWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
A V Q + ++ DNI +G + + K D+ ++ A ++ +H + ++
Sbjct: 75 AMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA---ELLQIEH----LLDRK 127
Query: 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILV 775
LSGGQ+QR+ L RA+ + ++L D+P S +DA + E + T I V
Sbjct: 128 PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV 187
Query: 776 TH-QVEFLSEVDRILVLEGGQITQSG 800
TH QVE ++ DRI V+ GQI Q G
Sbjct: 188 THDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 63/220 (28%), Positives = 98/220 (44%), Gaps = 33/220 (15%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------- 659
L GV+L + + +A+ G GAGK++LL I+G +P SG++ G
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE 71
Query: 660 -----IAYVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
I YV + I ++ +N+L G AR KA L++ F L E
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLG---AYARRRAKRKA-RLERVYELFP--RLKER 125
Query: 714 -GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--- 769
Q LSGG++Q + +ARA+ + + L D+P + A E + A+ +
Sbjct: 126 RKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL-----APKIVEEIFEAIRELRD 180
Query: 770 --KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T++LV F E+ DR VLE G++ G ELL
Sbjct: 181 EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 3e-19
Identities = 68/230 (29%), Positives = 104/230 (45%), Gaps = 51/230 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L+ VNL+I + +A+ G GAGKS+LL ++ G + SG + G
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 660 ---IAYVSQT-SWIQSGSIRDNILYGKPMDKAR-------YDKAIKACALDKDINNFDHG 708
I + Q + + S+ +N+L G+ + + K KA ALD
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA-------- 131
Query: 709 DLTEIG------QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
L +G QR LSGGQ+QR+ +ARA+ I L D+P +++D +A +
Sbjct: 132 -LERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESA-----KK 185
Query: 763 VMAALEK------KTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQEL 805
VM L+ TVI+ HQV+ DRI+ L+ G+I G EL
Sbjct: 186 VMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 4e-19
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 44/228 (19%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E+ L + Y VL+ ++ G + +VG G+GK+TL+ A+ L++P GSI +
Sbjct: 1 EVEDLTVSY--GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 1277 DGVDICSMGLKDLRVKLSIIPQEPTL---FRGSVRTNLDPLGLYSD------------DE 1321
G + + R ++ +PQ ++ F SVR ++ +GLY +
Sbjct: 59 FGKPL-----EKERKRIGYVPQRRSIDRDFPISVR-DVVLMGLYGHKGLFRRLSKADKAK 112
Query: 1322 IWKALEKCQL----KTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLD 1377
+ +ALE+ L I L S GQ+Q L R L++ +L+LD
Sbjct: 113 VDEALERVGLSELADRQIGEL---------------SGGQQQRVLLARALVQDPDLLLLD 157
Query: 1378 EANASIDSATDAILQRIIRQ-EFSNCTVITVAHRVPTVIDS-DMVMVL 1423
E A +D T + ++R+ T++ V H + V++ D V++L
Sbjct: 158 EPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL 205
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 4e-19
Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 30/242 (12%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ L Y PN LK I + G V ++G +G+GK+TL+ + RLVEP+ GSIL
Sbjct: 2 LEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 1276 IDGVDICSMGLKDL---RVKLSIIPQEPTLF-RGSVRTNL------------DPLGLYSD 1319
++G DI + K L R ++ +I Q L R +V N+ LG +S+
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE 120
Query: 1320 DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEA 1379
++ +AL + ++ + + S GQ+Q + R L ++ +++ DE
Sbjct: 121 EDKERALS-ALERVGLADKAYQ-------RADQLSGGQQQRVAIARALAQQPDLILADEP 172
Query: 1380 NASIDSATDAILQRIIR---QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPS 1435
AS+D T + ++ +E TVI H+V +D ++ L G+++ PS
Sbjct: 173 IASLDPKTSKQVMDYLKRINKED-GITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231
Query: 1436 KL 1437
+L
Sbjct: 232 EL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 4e-19
Identities = 69/217 (31%), Positives = 104/217 (47%), Gaps = 38/217 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-----------IA 661
L VNL++ +A+ G G+GKS+LL I G SG + L G I
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 662 YVSQT-SWIQSGSIRDNILYG-------KPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
+V Q + + ++RDNI +G K KAR ++ ++ L+ +
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG------------L 123
Query: 714 GQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-- 770
G R N LSGGQ+QR+ LARA+ + + L D+PF A+DA L + L +
Sbjct: 124 GDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL--RSWLRKLHDEVH 181
Query: 771 -TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
T + VTH Q E + DRI+V+ G+I Q G+ E+
Sbjct: 182 VTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 5e-19
Identities = 52/256 (20%), Positives = 109/256 (42%), Gaps = 53/256 (20%)
Query: 1216 IELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP---- 1269
+E+ L + + ++ ++ G +G+VG +GSGK+TL AL L+
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 1270 AGGSILIDGVDICSMGLKDLRV----KLSIIPQEPTLFRGSVRTNLDPL----------- 1314
G +++DG D+ + +++R ++++I Q+P T+L+P+
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM-------TSLNPVMTIGDQIREAL 118
Query: 1315 -----GLYSD--DEIWKALEKCQL--KTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365
G ++ + LE+ L P++L S G RQ +
Sbjct: 119 RLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQL-----------SGGMRQRVMIAM 167
Query: 1366 VLLKRNRILVLDEANASIDSATDAILQRIIR--QEFSNCTVITVAHRVPTVID--SDMVM 1421
L + ++L+ DE ++D T A + +++ Q V+ + H V+ +D V+
Sbjct: 168 ALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD-LGVVAELADRVV 226
Query: 1422 VLSYGKLLEYDEPSKL 1437
V+ G+++E ++
Sbjct: 227 VMYKGEIVETGPTEEI 242
|
Length = 539 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 7e-19
Identities = 62/235 (26%), Positives = 100/235 (42%), Gaps = 40/235 (17%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+EL+ L Y L ++ T G + ++G +G GKTTL+ + L P G IL
Sbjct: 1 LELKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTN----LDPLGLYSDDEIWKALEKCQ 1330
IDG D+ G+ R + ++ Q+ LF +V N L G+ + + E +
Sbjct: 59 IDGRDV--TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLE 116
Query: 1331 LKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAI 1390
L L L+ + S GQ+Q L R L + +L+LDE SA DA
Sbjct: 117 L----VGLEGLLNRYPHE----LSGGQQQRVALARALAREPSLLLLDEPL----SALDAK 164
Query: 1391 LQRIIRQEFSN------CTVITVAHRVPTVID-------SDMVMVLSYGKLLEYD 1432
L+ +R+E T I V H D +D + V++ G++++
Sbjct: 165 LREELREELKELQRELGITTIYVTH------DQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 1e-18
Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 51/226 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-SIAYVSQTSWI- 669
L+G++L ++ + + + G G+GKS+LL + G E P SG++ + G + +
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD-SGSITVDGEDVGDKKDILKLR 76
Query: 670 -QSG------------SIRDNILY------GKPMDKARYDKAIKACALDKDINNFDHGDL 710
+ G ++ +N+ +AR +KA++ L+K
Sbjct: 77 RKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAR-EKALEL--LEK---------- 123
Query: 711 TEIGQRGL---------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
GL LSGGQ+QR+ +ARA+ D + LFD+P SA+D + +
Sbjct: 124 -----VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDV 178
Query: 762 CVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
A E T+I+VTH++ F EV DR++ ++ G+I + G +E
Sbjct: 179 MKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFF 224
|
Length = 240 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 1e-18
Identities = 68/221 (30%), Positives = 105/221 (47%), Gaps = 33/221 (14%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658
I LRGV+L+++ + +A+ G GAGK++LL I+G + SG + G
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 659 ----SIAYVSQTSWI-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE- 712
IAYV + I ++ +N+L G AR DK + L++ F L E
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGA---YARRDKEAQERDLEEVYELFP--RLKER 129
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--- 769
QR LSGG++Q + +ARA+ + + L D+P + A E + A+++
Sbjct: 130 RNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL-----APKIVEEIFEAIKELRK 184
Query: 770 ---KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T++LV F E+ DR VLE G+I SG ELL
Sbjct: 185 EGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225
|
Length = 237 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 2e-18
Identities = 56/222 (25%), Positives = 108/222 (48%), Gaps = 33/222 (14%)
Query: 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
++++ + + P+L P L+ V+ +K +KI + G GAGKS+L+ A+ +
Sbjct: 4 HGEIEVENLSVRYAPDLP-PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 652 GTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL 698
G + + G S+ + Q + SG+IR N+ P D Y
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL---DPFD--EYS-------- 109
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
D++I +G L + + GLNLS GQ+Q + LARA+ + + D+ +++D T A L
Sbjct: 110 DEEI----YGAL-RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA-L 163
Query: 759 FNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
+ + T++ + H++ + + D+ILV++ G++ +
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 46/224 (20%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658
+ L V+ IK + + + G G+GKS+L AILG + SG++ G
Sbjct: 18 VKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLR 77
Query: 659 -----SIAYVSQ---TSWIQSGSIRDNI-----LYGKPMDKARYDKAIKACA----LDKD 701
I V Q +S +I + I ++GK K +A+ L ++
Sbjct: 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEE 137
Query: 702 I-NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA---T 757
+ N + H LSGGQ+QR+ +ARA+ + + + D+P SA+D A
Sbjct: 138 VLNRYPHE-----------LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILD 186
Query: 758 LFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSG 800
L + + T++ +TH + ++++ DR+ V+ G+I + G
Sbjct: 187 LLKK--LQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 3e-18
Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 36/216 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSIAYVSQTS---- 667
L+ ++L +K + + + G G GK++LL I G E +GT+ G +++
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT-AGTIYQGGRD--ITRLPPQKR 76
Query: 668 ----WIQSG------SIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714
QS ++ DNI L + M +A + + A LD L
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERV-AELLDLV-------GLPGSE 128
Query: 715 QRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK--- 770
++ LSGGQ+QR+ LARA+ + L D+P SA+DA L E + L+++
Sbjct: 129 RKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE--IRQLQRRLGV 186
Query: 771 TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
T I+VTH Q E LS DRI+V+ G I Q G QE+
Sbjct: 187 TTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 5e-18
Identities = 62/243 (25%), Positives = 110/243 (45%), Gaps = 63/243 (25%)
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG----- 658
D + L+ V+L + + + G GAGKS+L+ I G E P SG+V + G
Sbjct: 13 DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-SGSVLVDGTDLTL 71
Query: 659 -----------SIAYVSQT-SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFD 706
I + Q + + S ++ +N+ P++ A KA
Sbjct: 72 LSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL--PLEIAGVPKA-------------- 115
Query: 707 HGDLTEIGQR--------GL---------NLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
EI +R GL LSGGQKQR+ +ARA+ N+ + L D+ SA
Sbjct: 116 -----EIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 750 VDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
+D T ++ ++ + ++ T++L+TH++E + + DR+ V+E G++ + G +E+
Sbjct: 171 LDPETTQSILA--LLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
Query: 806 LLA 808
Sbjct: 229 FAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 7e-18
Identities = 65/218 (29%), Positives = 111/218 (50%), Gaps = 32/218 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWI-- 669
+ V+LD++ + + G G+GKS+LL I I SG V + G IA +S+
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 670 ---------QS------GSIRDNILYG---KPMDKA-RYDKAIKACALDKDINNFDHGDL 710
QS ++ +N+ +G + + +A R ++A +A L + ++H
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALEL-VGLEGWEHKYP 158
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEK 769
E LSGG +QR+ LARA+ D DI L D+ FSA+D + +E + + A +
Sbjct: 159 DE-------LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ 211
Query: 770 KTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
KT++ +TH + E L DRI +++ G++ Q G +E+L
Sbjct: 212 KTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 7e-18
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 22/227 (9%)
Query: 1216 IELRQLKIRYRPNAPL---VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I++ L Y P L + +G VG++G TGSGK+TLI L L++P G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 1273 SILIDGVDICSMG--LKDLRVKLSIIPQEP--TLFRGSVRTNLD--P--LGLYSDDEIWK 1324
I+IDGVDI L D+R K+ ++ Q P LF ++ ++ P LGL S++EI
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL-SEEEIEN 121
Query: 1325 ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
+++ + + D S + S GQ++ + V+ +IL+LDE A +D
Sbjct: 122 RVKRA-MNIVGLDYEDYKDKSPFE----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176
Query: 1385 -SATDAILQRI--IRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGK 1427
D IL +I + +E+ N T+I V+H + V +D ++V++ GK
Sbjct: 177 PKGRDEILNKIKELHKEY-NMTIILVSHSMEDVAKLADRIIVMNKGK 222
|
Length = 287 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-17
Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ L Y + +L G++ T EG V ++GR G+GKTTL+ + L+ P GSI
Sbjct: 1 LEVENLNAGYGKSQ--ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 1276 IDGVDICSMGLKDLRVKLSI--IPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLK 1332
DG DI + R + I +P+ +F +V NL LG Y A + + K
Sbjct: 59 FDGRDITGLPP-HERARAGIGYVPEGRRIFPELTVEENLL-LGAY-------ARRRAKRK 109
Query: 1333 TTISSL----PNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDE 1378
+ + P +L S G++Q+ + R L+ R ++L+LDE
Sbjct: 110 ARLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 1e-17
Identities = 63/226 (27%), Positives = 102/226 (45%), Gaps = 37/226 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQTSWIQ 670
L V+L + ++I + G GAGKS+LL + GE+ SG V + Y+SQ +
Sbjct: 19 LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLD 78
Query: 671 SG-SIRDNILYG-KPMDK--ARYDKAIKACALDKDI------NNFDHGDLTEIGQR---- 716
++ D ++ G + + A ++A A D + D + R
Sbjct: 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEA 138
Query: 717 --GL----------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
GL +LSGG ++R+ LARA+ + D+ L D+P + +D + L +
Sbjct: 139 LLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDY--- 195
Query: 765 AALE--KKTVILVTHQVEFLSEV-DRILVLEGGQITQ-SGNYQELL 806
L+ TVI+V+H FL V IL L+ G++T GNY L
Sbjct: 196 --LKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYL 239
|
Length = 530 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-17
Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 24/223 (10%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
++L L RY L G++ T G G++G G+GKTTL+ L L P+ G+I
Sbjct: 1 LQLENLTKRYGKK--RALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNLDPLGLYS-------DDEIWKALE 1327
IDG D+ K LR ++ +PQE ++ +VR LD + + + LE
Sbjct: 58 IDGQDVLKQPQK-LRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE 116
Query: 1328 KCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSAT 1387
L L S G R+ + + L+ IL++DE A +D
Sbjct: 117 LVNLGDRAKKKIGSL-----------SGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 1388 DAILQRIIRQEFSNCTVITVAHRVPTVIDS-DMVMVLSYGKLL 1429
+ ++ + + VI H V V + V VL+ GKL+
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 2e-17
Identities = 63/219 (28%), Positives = 108/219 (49%), Gaps = 36/219 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWI-- 669
L+GV+LD++ + +A+ G G+GKS+LL I+G + SG V + G I+ +S+
Sbjct: 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75
Query: 670 --------QSG------SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
QSG ++ +N+ + ++ I+ L+K L +G
Sbjct: 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK---------LEAVGL 126
Query: 716 RGL------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM--AAL 767
RG LSGG K+R+ LARA+ D ++ L+D+P + +D A+ + ++ +
Sbjct: 127 RGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDP-IASGVIDDLIRSLKKE 185
Query: 768 EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
T I+VTH ++ + DRI VL G+I G +EL
Sbjct: 186 LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 3e-17
Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 29/239 (12%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
IEL+ + + V LK ++ + +G G++GR+G+GK+TLI + L P GS
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1274 ILIDGVDICSMGLKDLRV---KLSIIPQEPTLFRGSVRTNLD----PLGLYSDDEIWKAL 1326
+L+DG D+ + K+LR ++ +I Q L S RT + PL EI +
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLL--SSRTVFENVALPL------EIAG-V 112
Query: 1327 EKCQLKTTISSLPNKLDSSVSDEGENW----SAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
K +++ + L + + D+ + + S GQ+Q + R L ++L+ DEA ++
Sbjct: 113 PKAEIEERVLELLELVG--LEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 1383 IDSA-TDAILQRI--IRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
+D T +IL + I +E T++ + H + V D V V+ G+++E ++
Sbjct: 171 LDPETTQSILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 3e-17
Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 22/213 (10%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG----------- 658
L V+LDI + +A+ G G+GK++LL I G E P SGT+ G
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD-SGTILFGGEDATDVPVQER 74
Query: 659 SIAYVSQT-SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
++ +V Q + + ++ DN+ +G + K R ++ +A K L + R
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRV-KPRSERPPEAEIRAKVHELLKLVQLDWLADRY 133
Query: 718 LN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVI 773
LSGGQ+QR+ LARA+ + + L D+PF A+DA L + L + T +
Sbjct: 134 PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR--WLRRLHDELHVTTV 191
Query: 774 LVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
VTH Q E L DR++V+ G+I Q G E+
Sbjct: 192 FVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 4e-17
Identities = 60/231 (25%), Positives = 100/231 (43%), Gaps = 17/231 (7%)
Query: 1216 IELRQLKIRYRP--NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
+E+ L Y A ++ ++ EG G++G G+GKTTL+ + L+ P G
Sbjct: 2 LEVTDLTKSYGSKVQA---VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGK 58
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNLDPLGLYSDDEIWKALEKCQLK 1332
+ IDGVD +R K+ ++ E L+ R + R NL + L + ++K
Sbjct: 59 VTIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNG------LSRKEIK 111
Query: 1333 TTISSLPNKLD--SSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAI 1390
I+ L +L + +S G +Q + R L+ ILVLDE + +D T
Sbjct: 112 ARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRK 171
Query: 1391 LQRIIRQ-EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
I+Q + VI +H + V D V+VL G+++ L
Sbjct: 172 FHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 5e-17
Identities = 54/213 (25%), Positives = 93/213 (43%), Gaps = 32/213 (15%)
Query: 1216 IELRQLKIRYR--PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
IEL+ + Y LK + G V +VG +GSGK+TL++ L L +P G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 1274 ILIDGVDICSMGLKDL----RVKLSIIPQEPTLF-RGSVRTNLD---PLGLYSDDEIWKA 1325
+LI+G D+ + K+L R K+ + Q L +V N++ + S +A
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 1326 LEKCQLKTTISSL-----PNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEAN 1380
E+ + P++L S GQ+Q + R L+ +I++ DE
Sbjct: 122 AEELLEVLGLEDRLLKKKPSEL-----------SGGQQQRVAIARALINNPKIILADEPT 170
Query: 1381 ASIDSAT----DAILQRIIRQEFSNCTVITVAH 1409
++DS T +L+ + ++ T+I V H
Sbjct: 171 GNLDSKTAKEVLELLRELNKER--GKTIIMVTH 201
|
Length = 226 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 5e-17
Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 49/220 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L+ V+L I + +A+ G GAGKS+LL + G + SG+V + G+
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 660 ---IAYVSQT-SWIQSGSIRDNILYGK------------PMDKARYDKAIKACALDKDIN 703
I + Q + I+ S+ +N+L G+ K +A+ A L++
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAA--LER--- 131
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
G L + QR LSGGQ+QR+ +ARA+ + L D+P +++D ++ V
Sbjct: 132 ---VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASS-----RQV 183
Query: 764 MAALEK------KTVILVTHQVEF-LSEVDRILVLEGGQI 796
M L++ TVI+ HQV+ DRI+ L+ G+I
Sbjct: 184 MDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 5e-17
Identities = 57/206 (27%), Positives = 88/206 (42%), Gaps = 37/206 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L+ V+ ++ ++I + G GAGKS+LL + G P SGTV + G ++ + + G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG---LGGG 94
Query: 673 -----SIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG----L 718
+ R+NI L G + + D+ I + +E+G
Sbjct: 95 FNPELTGRENIYLNGRLLG--LSRKEIDEKIDEII-----------EFSELGDFIDLPVK 141
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT---AATLFNECVMAALEKKTVILV 775
S G K R+ A A + DI L D+ + DA E + KTVILV
Sbjct: 142 TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQG---KTVILV 198
Query: 776 THQVEFLSEV-DRILVLEGGQITQSG 800
+H + + DR LVLE G+I G
Sbjct: 199 SHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 6e-17
Identities = 70/268 (26%), Positives = 131/268 (48%), Gaps = 25/268 (9%)
Query: 557 SIMIQVKVSFDRINAF-LLD--HELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTL 613
S++ Q V+ +R+ F L+D + +D R + S R + I +F++ + L
Sbjct: 306 SMLQQAVVAGERV--FELMDGPRQQYGNDDRPLQ---SGR-IDIDNVSFAYRDDN--LVL 357
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660
+ +NL + +A+ G G+GKS+L ++G P G + L G +
Sbjct: 358 QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417
Query: 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720
A V Q + + + N+ G+ + + + +A++ L + + G T +G++G NL
Sbjct: 418 AMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE 780
S GQKQ + LAR + I + D+ + +D+ T + + + A E T++++ H++
Sbjct: 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI-QQALAAVREHTTLVVIAHRLS 536
Query: 781 FLSEVDRILVLEGGQITQSGNYQELLLA 808
+ E D ILVL GQ + G +Q+LL A
Sbjct: 537 TIVEADTILVLHRGQAVEQGTHQQLLAA 564
|
Length = 592 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 6e-17
Identities = 57/236 (24%), Positives = 111/236 (47%), Gaps = 51/236 (21%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTVNLYGS----- 659
+P +R V+ +++ + + + G G+GKS+L A++G +P+ SG V L G
Sbjct: 21 RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80
Query: 660 ------------IAYVSQ---TSWIQSGSIRDNI-----LYGKPMDKARYDKAIKACAL- 698
IA + Q TS +I D I L+GK +A++
Sbjct: 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQV 140
Query: 699 ----DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754
+ + + H LSGG +QR+ +A A+ + + D+P +A+D T
Sbjct: 141 GLPDPERRDRYPH-----------QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT 189
Query: 755 AATLFNECVMAALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
A + + ++ L+++ V+ +TH + ++E+ DR++V+ G+I ++G +E+L
Sbjct: 190 QAQILD--LLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243
|
Length = 539 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 6e-17
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 14/177 (7%)
Query: 1227 PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG--VDICSM 1284
P P VLKG+ G + ++G G+GK+TL+ L L+ P G++LIDG +D
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 1285 GLKDLRVKLSIIPQEP--TLFRGSVRTNLD--PLGL-YSDDEIWKALEKCQLKTTISSLP 1339
GL + R ++ ++ Q+P LF V ++ PL L S+ E+ + + + S L
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR 121
Query: 1340 NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIR 1396
+ + S G+++ + + R +L+LDE A +D A + I+R
Sbjct: 122 ERPTHCL-------SGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 7e-17
Identities = 69/275 (25%), Positives = 132/275 (48%), Gaps = 22/275 (8%)
Query: 1182 ISVERIKQFM-HIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTF 1240
+S++R++ F+ H EP +I +R I + + + P L GIT +
Sbjct: 605 VSLKRLRIFLSHEELEPDSI---ERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSI 661
Query: 1241 SEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEP 1300
EG V VVG+ G GK++L+SAL ++ G + + G ++ +PQ+
Sbjct: 662 PEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQA 708
Query: 1301 TLFRGSVRTNLDPLGLYSDDEIWKA-LEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359
+ S+R N+ G +++ ++ LE C L + LP+ + + ++G N S GQ+Q
Sbjct: 709 WIQNDSLRENI-LFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ 767
Query: 1360 LFCLGRVLLKRNRILVLDEANASIDS-ATDAILQRIIRQE--FSNCTVITVAHRVPTVID 1416
L R + I + D+ +++D+ I + +I E N T I V H + +
Sbjct: 768 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ 827
Query: 1417 SDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451
D+++V+S GK+ E +L++ + +F++ + Y
Sbjct: 828 VDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTY 862
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 7e-17
Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 45/226 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTV-----NLYG---- 658
L+ +NLDI Q A+ G G GKS+LL ++ L +I G V ++Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM----DKARYD----KAIKACAL---DKD 701
+ V Q SI DNI YG + DK D +++K AL KD
Sbjct: 77 VVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD 136
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ L LSGGQ+QR+ +ARA+ + ++ L D+P SA+D + E
Sbjct: 137 ----------RLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKI--E 184
Query: 762 CVMAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
++ L+KK T+++VTH ++ + + DR G++ + G +++
Sbjct: 185 ELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 8e-17
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 14/127 (11%)
Query: 1257 TTLISALFRLVEPAGGSILIDGVDICSMG-LKDLRVKLSIIPQEPTLF-RGSVRTNLDPL 1314
+TL+ + L++P G+IL+DG D + K LR ++ ++ Q+P LF +VR NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1315 GL--YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372
+D +ALE+ L + P S GQ+Q + R LLK+ +
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 1373 ILVLDEA 1379
+L+LDE
Sbjct: 111 LLLLDEP 117
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 8e-17
Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 30/243 (12%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP--- 1269
IE+R L + Y LK I + ++G +G GK+TL+ L R+ +
Sbjct: 5 IPAIEVRDLNLYY--GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPG 62
Query: 1270 --AGGSILIDGVDICSMGLK--DLRVKLSIIPQEPTLFRGSVRTNLDPLGL----YSDDE 1321
G +L+DG +I + +LR ++ ++ Q+P F S+ N+ GL D E
Sbjct: 63 ARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNV-AYGLRLHGIKDKE 121
Query: 1322 IWKALEKCQLKTTI-SSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEAN 1380
+ + +E K + + ++L S S GQ+Q C+ R L + +L++DE
Sbjct: 122 LDEIVESSLKKAALWDEVKDRLHKS----ALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177
Query: 1381 ASIDSATDAILQRIIRQEFSNCTVITVAH------RVPTVIDSDMVMVLSYGKLLEYDEP 1434
+++D + ++ +I + T++ V H RV SD G+L+E+
Sbjct: 178 SALDPISTLKIEELITELKKKYTIVIVTHNMQQAARV-----SDYTAFFYLGELVEFGPT 232
Query: 1435 SKL 1437
K+
Sbjct: 233 DKI 235
|
Length = 253 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 9e-17
Identities = 97/474 (20%), Positives = 169/474 (35%), Gaps = 115/474 (24%)
Query: 993 RILTRLSSDL------SILDFDIPFSIVFVAASG----TELLAIIGIMTFVTWQVLVVAI 1042
R T + DL S++ I F+ + + SG T GI ++ W V++ AI
Sbjct: 159 RNFTETTLDLSFGLLQSVISL-ISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAI 217
Query: 1043 FAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETS--QGVVTIR------AF---- 1090
A + + R LIR+N E +V +R A
Sbjct: 218 SASLLTHLIGR-------PLIRLNFE------RQKLEADFRYSLVRVRENAEAIALYRGE 264
Query: 1091 ----NMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAA--LFLVLIP 1144
+D + ++ ++ I LT F V++P
Sbjct: 265 KVERRRLD---DRFDAVLGN-------WRRLVRAQI-------RLTWFQLGYGWLSVVLP 307
Query: 1145 RGYVAPGLVGLSLSYAFTLTGTQVFLS-----RWYCY----LANYIISVERIKQFMHIPP 1195
AP +++ + F W+ +A++ ++ R+ +F
Sbjct: 308 ILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQ--- 364
Query: 1196 EPPAIVEDKRPPSSWPF-----------KGRIELRQLKIRYRPNAPLVLKGITCTFSEGT 1244
A+ + I L L +R L L + G
Sbjct: 365 ---ALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTL-LSELNFEVRPGE 420
Query: 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILI-DGVDICSMGLKDLRVKLSIIPQEPTLF 1303
R+ + G +G+GKT+L+ AL L G I + + +PQ P L
Sbjct: 421 RLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALL------------FLPQRPYLP 468
Query: 1304 RGSVRTNL---DPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENW----SAG 1356
+G++R L + +SD E+ L K L L DE + W S G
Sbjct: 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL---------DEEDRWDRVLSGG 519
Query: 1357 QRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHR 1410
++Q R+LL + + + LDEA +++D T+ L +++++E + TVI+V HR
Sbjct: 520 EQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 9e-17
Identities = 75/243 (30%), Positives = 117/243 (48%), Gaps = 30/243 (12%)
Query: 1216 IELRQLKIRYRPNAPLVLKG---ITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I+ + Y P P+ KG I+ EG+ V +VG TGSGK+TL+ L++P+ G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 1273 SILIDGVDIC----SMGLKDLRVKLSIIPQ--EPTLFRGSVRTNLD--PLGL-YSDDE-- 1321
+I I G I + LK LR K+S++ Q E LF +V +++ P +S+DE
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 1322 --IWKALEKCQLKTT-ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDE 1378
K L+K L IS P +L S GQ + + V+ IL LDE
Sbjct: 123 EKALKWLKKVGLSEDLISKSPFEL-----------SGGQMRRVAIAGVMAYEPEILCLDE 171
Query: 1379 ANASID-SATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436
A +D ++Q + + TVI V H + V + +D V+VL +GKL+++ P +
Sbjct: 172 PAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231
Query: 1437 LME 1439
+
Sbjct: 232 IFS 234
|
Length = 287 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 9e-17
Identities = 52/235 (22%), Positives = 93/235 (39%), Gaps = 29/235 (12%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++R L Y+ + ++ +G G++G G+GKTT + L + P G+
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLGLYS----------DDEIWK 1324
I+G I + K R L PQ LF +VR +L Y+ +E+
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLR---FYARLKGLPKSEIKEEVEL 116
Query: 1325 ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
L L +K + S G ++ L L+ +L+LDE + +D
Sbjct: 117 LLRVLGLT-------DKANKRART----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD 165
Query: 1385 SATDAILQRIIRQEFSNCTVITVAHRVPTVID--SDMVMVLSYGKLLEYDEPSKL 1437
A+ + +I + ++I H + D + ++S GKL P +L
Sbjct: 166 PASRRAIWDLILEVRKGRSIILTTHS-MDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-16
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 27/129 (20%)
Query: 637 SSLLYAILGEIPKISGTVNLYG--------------SIAYVSQTSWI-QSGSIRDNILYG 681
S+LL I G + SGT+ L G I V Q + ++R+N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 682 KPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739
AR ++A++ L ++ + LSGGQKQR+ +ARA+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 740 IYLFDDPFS 748
+ L D+P +
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-16
Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 40/223 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
+ +LD++ + + G G+GKS+L+ + I G + + G
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 659 ---SIAYVSQTSWIQSG-----SIRDNILYG---KPMDKA-RYDKAIKACALDKDINNFD 706
I+ V Q ++ +N+ +G + + KA R ++A++A L + +
Sbjct: 104 RRKKISMVFQ----SFALLPHRTVLENVAFGLEVQGVPKAEREERALEALEL-VGLEGYA 158
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MA 765
E LSGG +QR+ LARA+ ND DI L D+ FSA+D + +E + +
Sbjct: 159 DKYPNE-------LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQ 211
Query: 766 ALEKKTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELLL 807
A KKT++ +TH + E L DRI +++ G+I Q G +E+LL
Sbjct: 212 AKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILL 254
|
Length = 386 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 27/210 (12%)
Query: 1216 IELRQLKIRYRPNAP--LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
IEL+ L Y LKG++ + +G V +VG +GSGK+TL++ L L P G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 1274 ILIDGVDICSMGLKDL----RVKLSIIPQEPTLFRG-SVRTNLD-PLGLYSD------DE 1321
+ +DG DI + K+L R + + Q L + N++ PL L +
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 1322 IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381
+ LE+ L ++ P++L S GQ+Q + R L +I++ DE
Sbjct: 121 AEELLERVGLGDRLNHYPSEL-----------SGGQQQRVAIARALANDPKIILADEPTG 169
Query: 1382 SIDSATDAILQRIIRQ--EFSNCTVITVAH 1409
++DS T + ++R+ + + T++ V H
Sbjct: 170 NLDSETGKEVMELLRELNKEAGTTIVVVTH 199
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 2e-16
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 26/159 (16%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK-DLR 1290
L+G++ G V ++GR G+GKTTL+ + LV P G I+ DG DI GL R
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI--TGLPPHER 75
Query: 1291 VKLSI--IPQEPTLF-RGSVRTNLDPLGLY--SDDEIWKA-LEKC-----QLKTTISSLP 1339
+L I +P+ +F R +V NL LG Y D E + LE+ +LK +
Sbjct: 76 ARLGIAYVPEGRRIFPRLTVEENLL-LGAYARRDKEAQERDLEEVYELFPRLKERRNQRA 134
Query: 1340 NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDE 1378
L S G++Q+ + R L+ R ++L+LDE
Sbjct: 135 GTL-----------SGGEQQMLAIARALMSRPKLLLLDE 162
|
Length = 237 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 2e-16
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 36/221 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAY----- 662
L V++DI Q A+ G G GKS+ L I L + ++ G + G Y
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 663 ----------VSQTSWIQSGSIRDNILYG-----KPMD-KARYDKAIKACALDKDINNFD 706
V Q SI DN+ YG D R +++++ AL ++ +
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-- 172
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
++ GL+LSGGQ+QR+ +ARA+ D ++ L D+P SA+D A + + +
Sbjct: 173 -----QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDP-VATSKIEDLIEEL 226
Query: 767 LEKKTVILVTHQVEFLSEV-DRILV-LEGGQITQSGNYQEL 805
E+ TV++VTH ++ + + D+ V L GG++ + + ++
Sbjct: 227 AEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267
|
Length = 285 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 2e-16
Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 33/209 (15%)
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI----- 660
L V+L I + + V G G GK++LL I G + G++ L G
Sbjct: 14 EGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG 73
Query: 661 ---AYVSQTS----WIQSGSIRDNILYG---KPMDKA-RYDKAIKACALDKDINNFDHGD 709
V Q W+ ++ DN+ +G + ++KA R + A + AL + +H
Sbjct: 74 AERGVVFQNEALLPWL---NVIDNVAFGLQLRGIEKAQRREIAHQMLALVG-LEGAEH-- 127
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+ LSGG +QR+ +ARA+ + + L D+PF A+DA T + + E
Sbjct: 128 -----KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182
Query: 770 -KTVILVTHQVE---FLSEVDRILVLEGG 794
K V+L+TH +E FL+ R++VL G
Sbjct: 183 GKQVLLITHDIEEALFLA--TRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 3e-16
Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 16/240 (6%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
+KI + ++ L P L+ V IK QK+ +CG G+GKSSL A + G +
Sbjct: 20 IKIHDLCVRYENNLK-PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI 78
Query: 655 -------------NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
L ++ + Q + SGSIR N+ R +A++ L
Sbjct: 79 VIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ + G + + G N S GQ+Q LARA + I + D+ +++D T L +
Sbjct: 139 VKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENIL-QK 197
Query: 762 CVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL-AGTAFEQLVNAHR 820
VM A +TV+ + H+V + + D +LVL G + + + LL F LV +
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRTDK 257
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 3e-16
Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 16/222 (7%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I L R+R V + G++ T G G++G G+GKTT + L L+EP G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNLDPLG-LYSDDEIWKALEKCQL 1331
+DG D+ + R +L + L+ R + R NL+ LY L+ +L
Sbjct: 62 ATVDGFDVVKEPA-EARRRLGFVSDSTGLYDRLTARENLEYFAGLY-------GLKGDEL 113
Query: 1332 KTTISSLPNKLD--SSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID-SATD 1388
+ L ++L + +S G RQ + R L+ +L+LDE +D AT
Sbjct: 114 TARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATR 173
Query: 1389 AILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLL 1429
A+ + I + ++ H + V D V+VL G+++
Sbjct: 174 ALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 5e-16
Identities = 63/230 (27%), Positives = 96/230 (41%), Gaps = 45/230 (19%)
Query: 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
+E+R + Y A L+ I+ + EG V +VG +G GK+TL+ + L P G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLF--RGSVRTNLDPLGL----YSDDEIW---- 1323
+L+DG + + Q+ L +V N+ LGL E
Sbjct: 61 VLVDGEPVT-----GPGPDRGYVFQQDALLPWL-TVLDNV-ALGLELQGVPKAEARERAE 113
Query: 1324 KALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASI 1383
+ LE L ++ P++L S G RQ L R L +L+LDE +++
Sbjct: 114 ELLELVGLSGFENAYPHQL-----------SGGMRQRVALARALAVDPDVLLLDEPFSAL 162
Query: 1384 DSATDAILQ----RIIRQEFSNCTVITVAHRVPTVID-----SDMVMVLS 1424
D+ T LQ I R+ TV+ V H ID +D V+VLS
Sbjct: 163 DALTREQLQEELLDIWRET--GKTVLLVTHD----IDEAVFLADRVVVLS 206
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 5e-16
Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 51/230 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L+ +NL+I + +A+ G GAGKS+LL I + SG++ L G
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 659 --SIAYVSQT-SWIQSGSIRDNILYGK-------PMDKARYDKAIKACALDKDINNFDHG 708
I + Q + I+ ++ +N+L+G+ R+ + K AL
Sbjct: 78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA-------- 129
Query: 709 DLTEIG------QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
L +G QR LSGGQ+QR+ +ARA+ D+ L D+P +++D T+ +
Sbjct: 130 -LERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTS-----KQ 183
Query: 763 VMAALEK------KTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805
VM L++ TVI+ HQV+ + DRI+ L+ G+I G EL
Sbjct: 184 VMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 78.6 bits (195), Expect = 6e-16
Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 26/216 (12%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK-DLR 1290
L ++ + G G++G G+GKTTL + + + P GS+L DG DI GL
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT--GLPPHEI 72
Query: 1291 VKLSIIP--QEPTLFRG-SVRTNL----------DPLGLYSDDEIWKALEKCQ--LKTTI 1335
+L I Q P LF +V N+ L + E +A E+ + L+
Sbjct: 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV- 131
Query: 1336 SSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA-TDAILQRI 1394
L + D S GQ++ + R L ++L+LDE A ++ T+ + + I
Sbjct: 132 -GLADLADRPAG----ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELI 186
Query: 1395 IRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLL 1429
TV+ V H + V+ +D V VL G+++
Sbjct: 187 RELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI 222
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 6e-16
Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 42/225 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYGSIAYVSQTSW-IQ 670
L G++L++K + +A+ G G+GK++LL I L E P+ +GT+ + G I + S Q
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE-AGTIRV-GDITIDTARSLSQQ 76
Query: 671 SGSIR----------------------DNILYGKPMDKARYDKAIKACALDKDINNFDHG 708
G IR +NI+ G P+ K +A A +++
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-PVIVKGEPKE-EATARAREL------ 128
Query: 709 DLTEIGQRG------LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
L ++G G LSGGQ+QR+ +ARA+ ++ LFD+P SA+D + N
Sbjct: 129 -LAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTI 187
Query: 763 VMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
A EK+T+++VTH++ F +V DR + ++ G+I + G + L
Sbjct: 188 RQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232
|
Length = 250 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 76.3 bits (189), Expect = 6e-16
Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 57/198 (28%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668
+ L GV+L ++ + A+ G GAGKS+L+ + G SG +
Sbjct: 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI-------------L 58
Query: 669 IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG---QRGLNLSGGQK 725
+ GK + A A G I Q LS G++
Sbjct: 59 VD----------GKEVSFASPRDAR------------RAG----IAMVYQ----LSVGER 88
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLS 783
Q +++ARA+ +A + + D+P +A+ LF V+ L + VI ++H L
Sbjct: 89 QMVEIARALARNARLLILDEPTAALTPAEVERLFK--VIRRLRAQGVAVIFISH---RLD 143
Query: 784 EV----DRILVLEGGQIT 797
EV DR+ VL G++
Sbjct: 144 EVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 7e-16
Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 39/219 (17%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG--------- 658
+ L V+L+I + + G GAGKS+LL I E P SG+V + G
Sbjct: 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT-SGSVFVDGQDLTALSEA 76
Query: 659 -------SIAYVSQT-SWIQSGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNF 705
I + Q + + S ++ +N+ + G P + + L +
Sbjct: 77 ELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVP-KAEIKQRVAELLEL---VGLS 132
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
D D LSGGQKQR+ +ARA+ N+ I L D+ SA+D T ++ ++
Sbjct: 133 DKADRYP-----AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE--LLK 185
Query: 766 ALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSG 800
+ ++ T++L+TH++E + + DR+ VL+ G++ + G
Sbjct: 186 DINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEG 224
|
Length = 339 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 7e-16
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 32/215 (14%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658
+L I + + G G+GKS+ + + I +G + + G
Sbjct: 12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRK 71
Query: 659 SIAYVSQT-SWIQSGSIRDNILYGKPMDK----ARYDKAIKACALDKDINNFDHGDLTEI 713
I V Q + +I N G + R +KA++ L + ++H E
Sbjct: 72 KIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKL-VGLEEYEHRYPDE- 129
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTV 772
LSGG +QR+ LARA+ + DI L D+ FSA+D ++ +E + A +KT+
Sbjct: 130 ------LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTI 183
Query: 773 ILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
+ +TH + E + DRI++++ G+I Q G E+L
Sbjct: 184 VFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 7e-16
Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 48/227 (21%)
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILG---------EIPKISGTVNLYG------- 658
+LDI+ + + G G+GKS+LL A+ G + G+V++
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 659 -----SIAYVSQT----SWIQSGSIRDNILYGKPMD-------KARYDKAIKACALDKDI 702
++ V Q W ++ +N+ +G M + R D+ ++ L +
Sbjct: 102 RLRTHRVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWA 158
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ LSGG +QR+ LARA +A I L D+PFSA+D L +E
Sbjct: 159 DRKPG-----------ELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDEL 207
Query: 763 V-MAALEKKTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELLL 807
+ + + KKT++ V+H + E L +RI ++EGG+I Q G +E++L
Sbjct: 208 LELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 9e-16
Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 38/216 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-SIAYVSQ----- 665
+ ++L I + + + G G GK+++L I G E P SG + L G I +V
Sbjct: 30 ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-SGRIMLDGQDITHVPAENRHV 88
Query: 666 TSWIQS------GSIRDNILYGKPMDK-------ARYDKAIKACALDKDINNFDHGDLTE 712
+ QS ++ +N+ +G M K R +A++ L+ +
Sbjct: 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE------EFAQ--- 139
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-- 770
++ LSGGQ+QR+ +ARAV N + L D+ SA+D + NE + AL++K
Sbjct: 140 --RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNE--LKALQRKLG 195
Query: 771 -TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQE 804
T + VTH Q E L+ DRI+V+ G+I Q G +E
Sbjct: 196 ITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231
|
Length = 375 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 9e-16
Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 19/182 (10%)
Query: 1238 CTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIP 1297
TF++G +VG +GSGK+TL++ + P G +LI+GVD+ + D V S++
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPV--SMLF 76
Query: 1298 QEPTLFRG-SVRTNLD----PLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGEN 1352
QE LF +V N+ P GL E +A+E + ++ L +L +
Sbjct: 77 QENNLFAHLTVEQNVGLGLSP-GLKLTAEDRQAIEVALARVGLAGLEKRLPGEL------ 129
Query: 1353 WSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRI---IRQEFSNCTVITVAH 1409
S G+RQ L RVL++ +L+LDE A++D A A + + + E TV+ V H
Sbjct: 130 -SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKM-TVLMVTH 187
Query: 1410 RV 1411
+
Sbjct: 188 QP 189
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 21/246 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + RY V + ++G + ++G +GSGKTT + + RL+EP G I
Sbjct: 1 IEFENVTKRYGGGKKAV-NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTI 1335
IDG DI +LR K+ + Q+ LF T + + L W K +++
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLF--PHMTVEENIALVPKLLKWP---KEKIRERA 114
Query: 1336 SSL-------PNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATD 1388
L P + E S GQ+Q + R L +L++DE ++D T
Sbjct: 115 DELLALVGLDPAEFADRYPHE---LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITR 171
Query: 1389 AILQRIIR--QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMETNSSFS 1445
LQ + Q+ T++ V H + +D + ++ G++++ P +++ S +
Sbjct: 172 DQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL--RSPAN 229
Query: 1446 KLVAEY 1451
VAE+
Sbjct: 230 DFVAEF 235
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 57/250 (22%), Positives = 107/250 (42%), Gaps = 43/250 (17%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PA 1270
IE+ L + Y LK I + ++G +G GK+TL+ +L R+ +
Sbjct: 2 IEIENLNLFYGEKE--ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRI 59
Query: 1271 GGSILIDGVDICSMGLKD--LRVKLSIIPQEPTLFRGSVRTNLDPLGLYS---------- 1318
G +L DG DI + LR ++ ++ Q+P F S+ N+ Y
Sbjct: 60 EGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNI----AYGPRLHGIKDKK 115
Query: 1319 --DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVL 1376
D+ + ++L+K ++L +++ + D S GQ+Q C+ R L +L+L
Sbjct: 116 ELDEIVEESLKK-------AALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLL 168
Query: 1377 DEANASIDSATDAILQRIIRQEFSNCTVITVAH------RVPTVIDSDMVMVLSYGKLLE 1430
DE +++D ++ +I++ T++ V H R+ SD G+L+E
Sbjct: 169 DEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARI-----SDRTAFFYDGELVE 223
Query: 1431 YDEPSKLMET 1440
Y ++
Sbjct: 224 YGPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-15
Identities = 61/224 (27%), Positives = 109/224 (48%), Gaps = 18/224 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++ +L Y + LKGI +G ++G G+GK+TL L +++P+ G IL
Sbjct: 6 LKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 1276 IDG--VDICSMGLKDLRVKLSIIPQEP--TLFRGSVRTNLD--PLGL-YSDDEIWKALEK 1328
DG +D GL LR + ++ Q+P LF SV ++ + L +DE+ K ++
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDN 124
Query: 1329 CQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDS-AT 1387
+T I L +K + S GQ++ + VL+ ++LVLDE A +D
Sbjct: 125 ALKRTGIEHLKDKPTHCL-------SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177
Query: 1388 DAILQRIIR-QEFSNCTVITVAHRVPTV-IDSDMVMVLSYGKLL 1429
I++ ++ Q+ T+I H + V + D V V+ G+++
Sbjct: 178 SEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221
|
Length = 283 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 1e-15
Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 22/211 (10%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659
L ++L ++ + IA+ G G GKS+LL + I SGT+ G
Sbjct: 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYR 76
Query: 660 --IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
++Y +QT + ++ DN+++ P + R + +A ALD + F D + + +
Sbjct: 77 QQVSYCAQTPALFGDTVEDNLIF--PW-QIRNRRPDRAAALD-LLARFALPD-SILTKNI 131
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL-VT 776
LSGG+KQRI L R + I L D+ SA+D + E+ +L +T
Sbjct: 132 TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWIT 191
Query: 777 H-QVEFLSEVDRILVLEGGQIT--QSGNYQE 804
H + + + D+++ L+ G Q +
Sbjct: 192 HDKDQAIRHADKVITLQPGHAGEMQEARQEL 222
|
Length = 223 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 17/203 (8%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ--TS 667
L+ ++ +I +++ + G GAGKS+LL I G SG V + G +A + +
Sbjct: 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAG 99
Query: 668 WIQSGSIRDNI-LYGKPMDKARYDKAIKACALDKDINNFDH-GDLTEIGQRGLNLSGGQK 725
+ + R+NI L G + R K I +I F GD I Q S G
Sbjct: 100 FDPELTGRENIYLRGLILGLTR--KEIDEKV--DEIIEFAELGDF--IDQPVKTYSSGMY 153
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDA---HTAATLFNECVMAALEKKTVILVTHQVEFL 782
R+ + A + + DI L D+ + DA NE V + KT++LV+H + +
Sbjct: 154 ARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELV---EKNKTIVLVSHDLGAI 210
Query: 783 SEV-DRILVLEGGQITQSGNYQE 804
+ DR + LE GQI G+ +E
Sbjct: 211 KQYCDRAIWLEHGQIRMEGSPEE 233
|
Length = 249 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 65/215 (30%), Positives = 93/215 (43%), Gaps = 37/215 (17%)
Query: 613 LRGVNLDIKW---AQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---------- 659
L L I + + + G+ GAGKS+LL I G GT+ L G+
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 660 -------IAYVSQT-SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
I V Q + ++R+N+ +G + R D+ I L D L
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDR-ISVDEL------LDLLGLD 122
Query: 712 EIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEK 769
+ R LSGG+KQR+ LARA+ ++ L D+PFSA+D L E +
Sbjct: 123 HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182
Query: 770 KTVILVTHQVEFLSEV----DRILVLEGGQITQSG 800
VI VTH LSE DRI+V+E G++ G
Sbjct: 183 IPVIFVTHD---LSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-15
Identities = 48/195 (24%), Positives = 76/195 (38%), Gaps = 36/195 (18%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ R L ++ +G++ T + G + V G G GKTTL+ L L+ P G +
Sbjct: 1 LAARNLA--CSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVR 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG---------SVRTNLD---PLGLYSDDEIW 1323
+G + + P L+ G S NL + + I
Sbjct: 59 WNGTALA---------EQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIE 109
Query: 1324 KALEKCQLKTTISSLP-NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
AL L T LP +L SAGQ++ L R+ L R + +LDE +
Sbjct: 110 DALAAVGL-TGFEDLPAAQL-----------SAGQQRRLALARLWLSRAPLWILDEPTTA 157
Query: 1383 IDSATDAILQRIIRQ 1397
+D A A+L ++R
Sbjct: 158 LDKAGVALLAGLLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 2e-15
Identities = 63/229 (27%), Positives = 109/229 (47%), Gaps = 14/229 (6%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + RY + + T EG + ++G +GSGKTT + + RL+EP G IL
Sbjct: 2 IEFENVSKRY--GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTI 1335
IDG DI + +LR K+ + Q+ LF T + + W +K ++K
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLF--PHLTVAENIATVPKLLGW---DKERIKKRA 114
Query: 1336 SSLPNKLDSSVSDEGENW----SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAIL 1391
L + + S+ + + S GQ+Q + R L IL++DE ++D T L
Sbjct: 115 DELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQL 174
Query: 1392 QRIIR--QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
Q I+ Q+ T++ V H + + +D + V+ G++++YD P ++
Sbjct: 175 QEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI 223
|
Length = 309 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-15
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 33/224 (14%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
++ + + +D + L+ ++ I +IA+ G GAGKS+LL + GE+ +SGTV
Sbjct: 322 LEFENVSKGYDGGRLL--LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 655 NLYG---SIAYVSQTS--WIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGD 709
+ G I Y Q ++ + + G P + +A F G+
Sbjct: 380 KV-GETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG------F-TGE 431
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+ + LSGG+K R+ LA+ + ++ L D+P + +D + + ALE+
Sbjct: 432 --DQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES---------LEALEE 480
Query: 770 K------TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
TV+LV+H FL V RI ++E G Y++ L
Sbjct: 481 ALLDFEGTVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYL 524
|
Length = 530 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 2e-15
Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 16/174 (9%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
V+ ++ + G VG++G G+GKTT + LV P G IL+D DI + + R
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPM-HKRA 77
Query: 1292 KLSI--IPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKT-----TISSLPNKLD 1343
+L I +PQE ++FR +V N+ + + ++ KA K +L I+ L +
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKA 137
Query: 1344 SSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ 1397
S+ S G+R+ + R L + ++LDE A +D +QRII+
Sbjct: 138 YSL-------SGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKH 184
|
Length = 243 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 16/188 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ L RY V+ G++ + +G VG++G G+GKTT + LV+P G IL
Sbjct: 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58
Query: 1276 IDGVDICSMGLKDLRVKLSII--PQEPTLFRG-SVRTNLDPL--GLYSDDEIWKALEKCQ 1330
+DG DI + + R +L I PQE ++FR +V N+ + + + +
Sbjct: 59 LDGQDITKLPM-HKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEEL 117
Query: 1331 LKT-TISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA 1389
L+ I+ L SS+ S G+R+ + R L + L+LDE A +D
Sbjct: 118 LEEFHITHLRKSKASSL-------SGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQ 170
Query: 1390 ILQRIIRQ 1397
+Q+II+
Sbjct: 171 DIQKIIKI 178
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.3 bits (190), Expect = 2e-15
Identities = 69/244 (28%), Positives = 118/244 (48%), Gaps = 28/244 (11%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----P 1269
+IE+R LK+ + VL G+ + T ++G +GSGK+TL+ RL+E
Sbjct: 3 KIEIRDLKVSF--GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLGLY------SDDEI 1322
G + +DG DI M + +LR ++ ++ Q P S+ N+ LGL S E+
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENV-ALGLKLNRLVKSKKEL 119
Query: 1323 WK----ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDE 1378
+ ALEK QL + ++LD+ S GQ+Q C+ R L + +L+ DE
Sbjct: 120 QERVRWALEKAQLWDEVK---DRLDAPAG----KLSGGQQQRLCIARALAFQPEVLLADE 172
Query: 1379 ANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
A++D A ++ + + + T++ V H SD V L G+++E+ P++
Sbjct: 173 PTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG-PTRE 231
Query: 1438 METN 1441
+ TN
Sbjct: 232 VFTN 235
|
Length = 250 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 2e-15
Identities = 54/239 (22%), Positives = 105/239 (43%), Gaps = 22/239 (9%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I + + +Y+ +A LK ++ +G +VG GSGK+T+ + + + G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEP-TLFRGSVRTNLDPLGL------YSD--DEIWKAL 1326
+ I + LR + I+ Q P F GS+ GL Y + + +AL
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEAL 127
Query: 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
++ + PN L S GQ+Q + VL +++LDEA + +D
Sbjct: 128 KQVDMLERADYEPNAL-----------SGGQKQRVAIAGVLALNPSVIILDEATSMLDPD 176
Query: 1387 TDAILQRIIR--QEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSS 1443
L ++R + N T+I++ H + +++D V+V++ G + + P+++ +
Sbjct: 177 ARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEE 235
|
Length = 269 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 3e-15
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 24/201 (11%)
Query: 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT-----VNLYGSIAYVSQTSWI-Q 670
+L++ + +A+ G GAGKS+LL I G I SG+ + G Y S + Q
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 671 SG------SIRDNILYG-KPMDK--ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721
++R NI G P K A + + A I ++ + + LS
Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADY-------LDRLPEQLS 130
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVE 780
GGQ+QR+ LAR + I L D+PFSA+D + E++ T+++VTH +
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
Query: 781 FLSEV-DRILVLEGGQITQSG 800
+ +I V+ G+I
Sbjct: 191 DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 3e-15
Identities = 62/239 (25%), Positives = 108/239 (45%), Gaps = 46/239 (19%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------- 659
+ L GV+L ++ + A+ G GAGKS+L+ + G P SG + + G
Sbjct: 20 GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRD 79
Query: 660 -----IAYVSQ-TSWIQSGSIRDNILYG-------KPMDKAR-YDKAIKACALDKDINNF 705
IA V Q S + + S+ +NI G +D+ +A + A +
Sbjct: 80 ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDP 139
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
D T +G +LS Q+Q +++ARA+ DA + + D+P +A+ LF+ ++
Sbjct: 140 D----TLVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD--LIR 189
Query: 766 ALEKK--TVILVTHQVEFLSEV----DRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
L+ + +I ++H L EV DRI VL G++ + A T+ ++LV
Sbjct: 190 RLKAQGVAIIYISH---RLDEVFEIADRITVLRDGRVVGTRPT----AAETSEDELVRL 241
|
Length = 500 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 4e-15
Identities = 59/239 (24%), Positives = 108/239 (45%), Gaps = 54/239 (22%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYGS---- 659
+ + GV+ ++K + + + G G+GKS L AI+G +PK + G + G
Sbjct: 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLS 76
Query: 660 -------------IAYVSQ---TSWIQSGSIRDNI-----LYGKPMDKA-RYDKAIKACA 697
IA + Q TS +I D I L+GK + K ++AI+
Sbjct: 77 LSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLE 136
Query: 698 L------DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751
L ++ + ++ H LSGG +QR+ +A A+ + + + D+P +A+D
Sbjct: 137 LVGIPDPERRLKSYPH-----------ELSGGMRQRVMIAMALALNPKLLIADEPTTALD 185
Query: 752 AHTAA---TLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
A L E + + +IL+TH + ++E+ DR+ V+ G+I + G +E+
Sbjct: 186 VTVQAQILDLLKE--LQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242
|
Length = 316 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 4e-15
Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 26/194 (13%)
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVSQT-SWIQSGSIRDN 677
G G GK++LL + G SG++ L G I V Q+ + ++ +N
Sbjct: 3 GPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEEN 62
Query: 678 ILYGKPMDKARYDKA-IKACALDKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVY 735
+ +G M K +A IK L+ L E R LSGGQ+QR+ LARA+
Sbjct: 63 VAFGLKMRKV--PRAEIKPRVLEA----LRLVQLEEFADRKPHQLSGGQQQRVALARALV 116
Query: 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTH-QVEFLSEVDRILVL 791
I L D+P SA+D + E ++++ T + VTH Q E ++ DRI ++
Sbjct: 117 FKPKILLLDEPLSALDKKLRDQMQLELKT--IQEQLGITFVFVTHDQEEAMTMSDRIAIM 174
Query: 792 EGGQITQSGNYQEL 805
G+I Q G +E+
Sbjct: 175 RKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 5e-15
Identities = 48/217 (22%), Positives = 90/217 (41%), Gaps = 32/217 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------SIAYVSQT 666
+R V+ + + + + G GAGK++LL I + SG V + G +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 667 SWIQSG-------SIRDNILY-------GKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+ + R+N+ Y + KAR + K L + ++
Sbjct: 78 GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD--------- 128
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV 772
+R S G KQ++ +ARA+ +D I + D+P S +D T + E + V
Sbjct: 129 --RRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAV 186
Query: 773 ILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLA 808
I +H ++ + + DR++VL G++ G+ + L
Sbjct: 187 IFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223
|
Length = 245 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 5e-15
Identities = 61/197 (30%), Positives = 94/197 (47%), Gaps = 45/197 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
L+ +NLDI + A+ G G GKS+LL + L ++ G V L G Y +
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82
Query: 668 WI----------QS-----GSIRDNILYG--------KPMDKARYDKAIKACAL-D--KD 701
+ Q SI DN+ YG K +D+ + ++K AL D KD
Sbjct: 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE-IVESSLKKAALWDEVKD 141
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ + L LSGGQ+QR+ +ARA+ ++ L D+P SA+D +TL E
Sbjct: 142 ----------RLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP--ISTLKIE 189
Query: 762 CVMAALEKK-TVILVTH 777
++ L+KK T+++VTH
Sbjct: 190 ELITELKKKYTIVIVTH 206
|
Length = 253 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 5e-15
Identities = 58/207 (28%), Positives = 89/207 (42%), Gaps = 32/207 (15%)
Query: 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
T G V ++G +G+GK+TL++ + PA G ILI+GVD +S++
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDH--TASPPAERPVSML 76
Query: 1297 PQEPTLFRG-SVRTNLDPLGLY-------SDDE-IWKALEKCQLKTTISSLPNKLDSSVS 1347
QE LF +V N+ LGL E + A + L + LP +L
Sbjct: 77 FQENNLFAHLTVAQNIG-LGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL----- 130
Query: 1348 DEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA-----TDAILQRIIRQEFSNC 1402
S GQRQ L R L++ IL+LDE +++D A + Q + E
Sbjct: 131 ------SGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQ--LCDERKM- 181
Query: 1403 TVITVAHRVPTVIDS-DMVMVLSYGKL 1428
T++ V H D V+ L G++
Sbjct: 182 TLLMVTHHPEDAARIADRVVFLDNGRI 208
|
Length = 231 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 5e-15
Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 30/213 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI-----AYVSQTS 667
L GV+LDIK + + G G GK++LL I G SG + L G + +
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN 75
Query: 668 WI-QSG------SIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
+ Q+ ++ +NI +G K + KA + + ALD L R
Sbjct: 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAE-ALDLV-------QLEGYANRK 127
Query: 718 LN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVI 773
+ LSGGQ+QR+ +ARA+ N+ + L D+P A+D + E + L+K+ T +
Sbjct: 128 PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE--LKRLQKELGITFV 185
Query: 774 LVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
VTH Q E L+ DRI V+ G+I Q G +E+
Sbjct: 186 FVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 5e-15
Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 60/188 (31%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
L+ ++L I +I + G GAGKS+LL I GE+ G V ++
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV---------- 63
Query: 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730
I Y F+ LSGG+K R+ L
Sbjct: 64 ------KIGY------------------------FEQ------------LSGGEKMRLAL 81
Query: 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSEV-DR 787
A+ + + ++ L D+P + +D + L AL+ TVILV+H FL +V +
Sbjct: 82 AKLLLENPNLLLLDEPTNHLDLESIEALEE-----ALKEYPGTVILVSHDRYFLDQVATK 136
Query: 788 ILVLEGGQ 795
I+ LE G+
Sbjct: 137 IIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 7e-15
Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 44/217 (20%)
Query: 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----SIAYVSQTSWI-Q 670
+L + + +A+ G GAGKS+LL I G SG + + G S S + Q
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 671 SG------SIRDNILYG-KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL----- 718
++ NI G P +K A ++ ++G G
Sbjct: 79 ENNLFAHLTVAQNIGLGLSP--------GLKLNAEQREKV---EAAAAQVGLAGFLKRLP 127
Query: 719 -NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-------EKK 770
LSGGQ+QR+ LAR + + I L D+PFSA+D L E M AL K
Sbjct: 128 GELSGGQRQRVALARCLVREQPILLLDEPFSALD----PALRAE--MLALVSQLCDERKM 181
Query: 771 TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T+++VTH E + + DR++ L+ G+I G+ QELL
Sbjct: 182 TLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 8e-15
Identities = 60/232 (25%), Positives = 107/232 (46%), Gaps = 19/232 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I L + Y P+ L+ I +G +G++G+ GSGK+TL L L+ P G +L
Sbjct: 2 IRLENVSYSY-PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 1276 IDGVDICSMG-LKDLRVKLSIIPQEP-TLFRGSVRTNLDPLGLYSDD------EIWKALE 1327
+ G+D L+ +R + I+ Q P T F G RT + L ++ EI K ++
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG--RTVEEDLAFGPENLCLPPIEIRKRVD 118
Query: 1328 KCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID-SA 1386
+ + L+ + S GQ Q L +L L+ DE + +D +
Sbjct: 119 RALAEI-------GLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171
Query: 1387 TDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM 1438
A+L+RI + T++ + H + + D+D ++V+ GK++ EP ++
Sbjct: 172 GIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223
|
Length = 274 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 9e-15
Identities = 52/213 (24%), Positives = 96/213 (45%), Gaps = 19/213 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+EL+Q+ Y +L I+ + G + + G +G GK+TL+ + L+ P G++L
Sbjct: 4 LELKQV--GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTI 1335
+G D+ ++ + R ++S Q P LF +V NL + +A L
Sbjct: 62 FEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLAR-- 119
Query: 1336 SSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSAT----DAIL 1391
+LP DS ++ S G++Q L R L +IL+LDE +++D + + ++
Sbjct: 120 FALP---DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176
Query: 1392 QRIIRQE--------FSNCTVITVAHRVPTVID 1416
R +R++ I A +V T+
Sbjct: 177 HRYVREQNVAVLWITHDKDQAIRHADKVITLQP 209
|
Length = 223 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 9e-15
Identities = 59/235 (25%), Positives = 116/235 (49%), Gaps = 23/235 (9%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--------VEPAGGSILIDGVDICS 1283
+K +T + ++G +G GKTTL+ ++ R+ VE G I G DI
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE---GKIYFKGQDIYD 74
Query: 1284 --MGLKDLRVKLSIIPQEPTLFRGSVRTN----LDPLGLYSDDEIWKALEKCQLKTTISS 1337
+ + + R K+ ++ Q+PT F S+ N G+ S ++ + +E+ LK ++
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEE-SLKK--AA 131
Query: 1338 LPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ 1397
L +++ S ++ G S GQ+Q C+ R L +++LDE +++D +++++ +
Sbjct: 132 LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEE 191
Query: 1398 EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451
N T++ V H + I +D + + G+L+EY +++E +KL EY
Sbjct: 192 LSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPK--NKLTEEY 244
|
Length = 250 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 1e-14
Identities = 68/220 (30%), Positives = 108/220 (49%), Gaps = 19/220 (8%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL------GEIPKISG----TVNLY---GS 659
L ++ I Q++ + G G+GKS+LL A L G+I +I G +V L +
Sbjct: 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDI-QIDGVSWNSVPLQKWRKA 78
Query: 660 IAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACALDKDINNF-DHGDLTEIGQRG 717
+ Q +I SG+ R N+ YGK D+ + K + L I F D + G
Sbjct: 79 FGVIPQKVFIFSGTFRKNLDPYGKWSDEEIW-KVAEEVGLKSVIEQFPGQLDFVLV-DGG 136
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
LS G KQ + LAR+V + A I L D+P + +D T + + + A TVIL H
Sbjct: 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVI-RKTLKQAFADCTVILSEH 195
Query: 778 QVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
++E + E R LV+E ++ Q + Q+LL + F+Q ++
Sbjct: 196 RIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAIS 235
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-14
Identities = 52/237 (21%), Positives = 99/237 (41%), Gaps = 53/237 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW---- 668
+ V+ D++ + + + G G+GKS+L + G +P SG++ G ++
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 669 --IQ------------SGSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
IQ ++ D + L +A A L+ L
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLE----------LV 416
Query: 712 EIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+ L+ LSGGQ+QR+ +ARA+ + + + D+P SA+D A + N ++
Sbjct: 417 GLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN--LLKD 474
Query: 767 LEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGN-----------YQELLLA 808
L+++ T + ++H + + + DR+ V+ G+I + G Y LLA
Sbjct: 475 LQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531
|
Length = 539 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 62/194 (31%), Positives = 93/194 (47%), Gaps = 38/194 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
L+ +NLDI+ Q A+ G G GKS+ L + L KI G V L G Y S
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 668 WIQ---------------SGSIRDNILYGKPM----DKARYD----KAIKACALDKDINN 704
Q SI DN+ YG DK + D K++K AL ++ +
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD 138
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
+ + L LSGGQ+QR+ +ARA+ + ++ L D+P SA+D +TL E ++
Sbjct: 139 -------RLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDP--ISTLKIEELI 189
Query: 765 AALEKK-TVILVTH 777
L+K T+++VTH
Sbjct: 190 QELKKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (185), Expect = 1e-14
Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 17/222 (7%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE------PAGGSILIDGVDICSMG 1285
+LK IT + G++G +GSGK+TL+ L RL+E G +L G DI +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 1286 LKDLRVKLSIIPQEPTLF-RGSVRTNLD-PL---GLYSDDEIWKALEKCQLKTTI-SSLP 1339
LR ++ ++ Q+P F S+ N+ PL G+ EI K +E+C K + +
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 1340 NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF 1399
++L+S S S GQ+Q + R L + ++L++DE + ID ++++I +
Sbjct: 145 DRLNSPAS----QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK 200
Query: 1400 SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440
+ ++ V+H V +D V L G+L+E+ +++ +
Sbjct: 201 NEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
Length = 257 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 1e-14
Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 27/205 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---------IAYV 663
L ++ ++ + + G GAGK++ + ILG I SG V G I Y+
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75
Query: 664 SQTSWI-QSGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
+ + + D ++Y G ++AR +D+ + + + +R
Sbjct: 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR-------IDEWLERLELSEYAN--KRV 126
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVT 776
LS G +Q++Q AV +D ++ + D+PFS +D L + + KTVIL T
Sbjct: 127 EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVILST 185
Query: 777 HQVEFLSEV-DRILVLEGGQITQSG 800
HQ+E + E+ DR+L+L G+ G
Sbjct: 186 HQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 64/242 (26%), Positives = 117/242 (48%), Gaps = 29/242 (11%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+R + + ++L G+ G + ++G +GSGK+TL+ + L+ P G IL
Sbjct: 9 IEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 1276 IDGVDICSM---GLKDLRVKLSIIPQEPTLFRG-SVRTNLD-PLGLYSD------DEIWK 1324
IDG DI + L ++R ++ ++ Q+ LF +V N+ PL ++ E+
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVL 126
Query: 1325 A-LEKCQLKTTISSL-PNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
LE L+ + L P++L S G R+ L R + +L LDE +
Sbjct: 127 MKLELVGLRGAAADLYPSEL-----------SGGMRKRVALARAIALDPELLFLDEPTSG 175
Query: 1383 IDSATDAILQRIIR--QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
+D + ++ +IR + TVI V H + +++ +D V VL+ GK++ P +L+
Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235
Query: 1440 TN 1441
++
Sbjct: 236 SD 237
|
Length = 263 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 2e-14
Identities = 59/238 (24%), Positives = 115/238 (48%), Gaps = 22/238 (9%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I + + RY A LK ++ + EG V +VG GSGK+TL L L+ P G+I
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEP------TLFRGSVRTNLDPLGLYSDDEIWK---AL 1326
+ G+ + + D+R ++ ++ Q P + V L+ +G+ ++ + + AL
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQAL 125
Query: 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
+ ++ ++ P++L S GQ+Q + VL + I++LDEA + +D
Sbjct: 126 RQVGMEDFLNREPHRL-----------SGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
Query: 1387 TDAILQRIIRQ--EFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNS 1442
+ +RQ E TV+++ H + +D V+V++ G++LE P ++ ++
Sbjct: 175 GRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGH 232
|
Length = 279 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 51/214 (23%), Positives = 82/214 (38%), Gaps = 41/214 (19%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SIA 661
VN WA + G GAGK++LL + GE P SG V L G I
Sbjct: 54 VNPGEHWA----IVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG 109
Query: 662 YVS-------QTSW-----IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGD 709
VS + + SG +Y + + A L + G
Sbjct: 110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQW---LLE-----LLGA 161
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN--ECVMAAL 767
+ +LS G+++R+ +ARA+ D ++ + D+P +D L N E + A+
Sbjct: 162 KHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASP 221
Query: 768 EKKTVILVTHQV-EFLSEVDRILVLEGGQITQSG 800
++ VTH E L+L+ G++ G
Sbjct: 222 GAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 2e-14
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 40/195 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAY----- 662
L +++ I + A G G GKS+LL L + +I G + L G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100
Query: 663 ----------VSQTSWIQSGSIRDNILYG---------KPMDKARYDKAIKACALDKDIN 703
V Q SI +N++YG + +D+A +++++ AL ++
Sbjct: 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEA-VERSLRGAALWDEVK 159
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ H + LSGGQ+QR+ +ARA+ + ++ L D+P SA+D +TL E +
Sbjct: 160 DRLH-------ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP--ISTLKIEEL 210
Query: 764 MAAL-EKKTVILVTH 777
+ L K T+++VTH
Sbjct: 211 ITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 30/219 (13%)
Query: 604 WDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG-- 658
W+ I L V+L ++ Q +A+ GS G+GK++LL AI G + SG + G
Sbjct: 16 WNKYARI--LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73
Query: 659 --------SIAYVSQTS-WIQSGSIRDNILY------GKPMDKARYDKAIKACALDKDIN 703
+AYV Q + ++R+ + Y + A K L +D+
Sbjct: 74 RKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAI-RKKRVEDVLLRDLA 132
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
G G +SGG+++R+ +A + D + + D+P S +D+ TA L +
Sbjct: 133 LTRIG-----GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187
Query: 764 MAALEKKTVILVTHQ--VEFLSEVDRILVLEGGQITQSG 800
A + VIL HQ + DRIL+L G+I SG
Sbjct: 188 QLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 2e-14
Identities = 58/240 (24%), Positives = 118/240 (49%), Gaps = 15/240 (6%)
Query: 1216 IELRQLKIRYRPNAPL-VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
+E+ L +Y + + L G++ + ++G V ++G+ GSGK+T + L E G +
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEP-TLFRGSVRTNLDPLGLYSD----DEIWKALEKC 1329
IDG + + + +LR K+ ++ Q P F G+ + G+ + +E+ K +++
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 1330 QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA 1389
L N LD + E S GQ+Q + ++ R I++LDE+ + +D
Sbjct: 125 LLAV------NMLDFK-TREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQ 177
Query: 1390 ILQRIIRQ--EFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 1447
+ R+I + E TV+++ H + SD ++V+ G++++ PS+L T+ ++
Sbjct: 178 EIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVEI 237
|
Length = 277 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 2e-14
Identities = 46/207 (22%), Positives = 90/207 (43%), Gaps = 48/207 (23%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISAL--FRLVEPAGGSILIDGVDICSMGLKDL 1289
+LK ++ G ++G +G+GK+TL++AL R G +LI+G + +
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL---DKRSF 80
Query: 1290 RVKLSIIPQE----PTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSS 1345
R + +PQ+ PTL +VR L ++ A + L
Sbjct: 81 RKIIGYVPQDDILHPTL---TVRETLM----FA------AK--------LRGL------- 112
Query: 1346 VSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQE-FSNCTV 1404
S G+R+ + L+ +L LDE + +DS++ + ++R+ + T+
Sbjct: 113 --------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTI 164
Query: 1405 ITVAHRVPTVIDS--DMVMVLSYGKLL 1429
I H+ + I D +++LS G+++
Sbjct: 165 ICSIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 3e-14
Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 23/179 (12%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE++ L + VLKGI+ + +G V ++G +GSGK+TL+ L L EP GSI
Sbjct: 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 1276 IDGVDICSMG-LKDLRVKLSIIPQEPTLF-RGSVRTN--LDP---LGLYSDDEIWKA--- 1325
+DG D+ + LR K+ ++ Q+ LF +V N L P L + KA
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALEL 120
Query: 1326 LEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
LEK L + P +L S GQ+Q + R L ++++ DE +++D
Sbjct: 121 LEKVGLADKADAYPAQL-----------SGGQQQRVAIARALAMDPKVMLFDEPTSALD 168
|
Length = 240 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 3e-14
Identities = 64/259 (24%), Positives = 115/259 (44%), Gaps = 68/259 (26%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA--- 1270
+E++ L + + +A +V + G++ +G +G+VG +GSGK+ L A+ L+
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 1271 --GGSILIDGVDICSMGLKDLRV----KLSIIPQEPTLFRGSVRTNLDPL---------- 1314
GG IL DG D+ S+ K+LR ++++I Q+P T+L+P+
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP-------MTSLNPVMTIGDQIAEV 114
Query: 1315 -----GLYSDDEIWK----ALEKCQL---KTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362
S E + LE + + + S P++L S G RQ
Sbjct: 115 LRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHEL-----------SGGMRQ--- 160
Query: 1363 LGRV-----LLKRNRILVLDEANASIDSATDA-ILQ--RIIRQEFSNCTVITVAHRVPTV 1414
RV L ++L+ DE ++D A IL + +++E +I + H + V
Sbjct: 161 --RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREK-GTALILITHDLGVV 217
Query: 1415 --IDSDMVMVLSYGKLLEY 1431
I +D V V+ G+++E
Sbjct: 218 AEI-ADRVAVMYAGRIVEE 235
|
Length = 316 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 3e-14
Identities = 59/200 (29%), Positives = 96/200 (48%), Gaps = 27/200 (13%)
Query: 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------IAYVSQT---SWIQSGSI 674
+ + G GAGK++LL AILG IP GTV + G+ I YV Q +W S+
Sbjct: 9 LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISV 68
Query: 675 RDNILYGK-----PMDKARY-DKAIKACALDKDINNFDHGDLTEIGQRGL-NLSGGQKQR 727
++ G+ + + D A AL + LTE+ R + LSGGQ+QR
Sbjct: 69 AHTVMSGRTGHIGWLRRPCVADFAAVRDALRR-------VGLTELADRPVGELSGGQRQR 121
Query: 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ-VEFLSEVD 786
+ +ARA+ + L D+PF+ +D T L + A +++ TH + ++ D
Sbjct: 122 VLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCD 181
Query: 787 RILVLEGGQITQSGNYQELL 806
R+++L G++ G Q+L
Sbjct: 182 RVVLLN-GRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 3e-14
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 39/219 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYGS----------- 659
L ++L+I+ + +A+ G G GK++LL AI G + ++G + +
Sbjct: 21 LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80
Query: 660 IAYVSQT-SWIQSGSIRDNILYG---KPMDKA----RYDKAIKACALDKDINNFDHGDLT 711
+A + Q + + DN+ +G + M KA R A+K L +
Sbjct: 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA---- 136
Query: 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK- 770
LSGG +QRI +ARA+ + D+ L D+P SA+DA+ A + E +AAL ++
Sbjct: 137 -------QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREE--IAALHEEL 187
Query: 771 ---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
T++ VTH Q + L+ D+ +++ G++ G Q L
Sbjct: 188 PELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 45/221 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
LRGV+L++ + V G G GK++LL ++G +P SG++ L G
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75
Query: 660 -IAYVSQTSWIQSG-SIRDNILYGKPMD-KARYDKAIKACALD-----KDINNFDHGDLT 711
IAYV Q I ++ +N+L G + R + I + K++
Sbjct: 76 GIAYVPQGREIFPRLTVEENLLTG--LAALPRRSRKIPDEIYELFPVLKEM--------- 124
Query: 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV------DAHTAATLFNECVMA 765
+G+RG +LSGGQ+Q++ +ARA+ + L D+P + D +
Sbjct: 125 -LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRR-----LR 178
Query: 766 ALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
A ++LV ++F E+ DR V+E G++ SG EL
Sbjct: 179 AEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 3e-14
Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 39/220 (17%)
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYG-SIA 661
+ +L L+GV+L I + +A+ GS G+GKS+LL+ +LG + P SG V G S++
Sbjct: 13 EGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLH-LLGGLDNPT-SGEVLFNGQSLS 70
Query: 662 YVSQTSWIQSGSIRD----------------NILYGKPM-----DKARYDKAIKACALDK 700
+S + +R+ L M K+ + +A + +
Sbjct: 71 KLSSN---ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLE 127
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
+ +H I R LSGG++QR+ +ARA+ N + L D+P +D + A +F
Sbjct: 128 KVG-LEH----RINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF- 181
Query: 761 ECVMAAL--EKKT-VILVTHQVEFLSEVDRILVLEGGQIT 797
+M L E T ++VTH +E ++DR+L ++ GQ+
Sbjct: 182 -DLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 4e-14
Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 21/235 (8%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
VLK I+ +G + V G TGSGK++L+ + +EP+ G I G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK-CQLKTTISSLPNKLDSSVSDEG 1350
++S PQ + G+++ N+ GL D+ + ++ K CQL+ I+ P K + + + G
Sbjct: 488 RISFSPQTSWIMPGTIKDNI-IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG 546
Query: 1351 ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA-ILQRIIRQEFSNCTVITVAH 1409
S GQR L R + K + +LD +D T+ I + + + SN T I V
Sbjct: 547 ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTS 606
Query: 1410 RVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA-----EYWSSCRRNS 1459
++ + +D +++L G Y S+L FS L+ + +S+ RRNS
Sbjct: 607 KLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNS 661
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 5e-14
Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658
P + ++L++ + + G GAGK++ L + GE+ SGT + G
Sbjct: 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQ 75
Query: 659 SIAYVSQTSWIQSG-SIRDNI-----LYGKPMDKARY--DKAIKACALDKDINNFDHGDL 710
S+ Y Q + ++R+++ L G P + + + ++ L N
Sbjct: 76 SLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN------- 128
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
LSGG K+++ LA A+ + L D+P S +D + +++ ++ + +
Sbjct: 129 KRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-LILEVRKGR 183
Query: 771 TVILVTHQ---VEFLSEVDRILVLEGGQITQSGNYQEL 805
++IL TH E L DRI ++ G++ G+ QEL
Sbjct: 184 SIILTTHSMDEAEALC--DRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-14
Identities = 54/213 (25%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
+ GV+L +K + + + G GAGK++ Y I+G + SG + L G
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 659 SIAYVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI-GQR 716
I Y+ Q + I ++ +NIL ++ K + L++ + F +T + +
Sbjct: 76 GIGYLPQEASIFRKLTVEENIL--AVLEIRGLSKKEREEKLEELLEEFH---ITHLRKSK 130
Query: 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV-ILV 775
+LSGG+++R+++ARA+ + L D+PF+ VD + ++ L+ + + +L+
Sbjct: 131 ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQK--IIKILKDRGIGVLI 188
Query: 776 T-HQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
T H V E LS DR ++ G++ G +E+
Sbjct: 189 TDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 52/238 (21%), Positives = 104/238 (43%), Gaps = 37/238 (15%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I + Y P L+ ++ +G V + G +G+GK+TL+ ++ P G IL
Sbjct: 2 IRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 1276 IDGVDICSMGLKD---LRVKLSIIPQEPTLFRGSVRTNLDPLGL------YSDDEIWK-- 1324
++G D+ + ++ LR ++ ++ Q+ L RT + + L EI +
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLL--PDRTVYENVALPLRVIGKPPREIRRRV 118
Query: 1325 --ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
L+ LK +LP++L S G++Q + R ++ + +L+ DE +
Sbjct: 119 SEVLDLVGLKHKARALPSQL-----------SGGEQQRVAIARAIVNQPAVLLADEPTGN 167
Query: 1383 IDSAT-DAILQRIIRQEFSN--CTVITVAHRVPTVIDSDM---VMVLSYGKLLEYDEP 1434
+D I++ + +E + TV+ H + V + M V+ L G+L+ +
Sbjct: 168 LDPDLSWEIMR--LFEEINRLGTTVLMATHDLELV--NRMRHRVLALEDGRLVRDESR 221
|
Length = 223 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 5e-14
Identities = 57/232 (24%), Positives = 111/232 (47%), Gaps = 13/232 (5%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT---LISALFRLVEPAGG 1272
+E + + Y + L I+ + G+ ++G GSGK+T LI+ L +
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEP-TLFRGSVRTNLDPLGLYSDDEIWKALEKCQL 1331
I +DG+ + + + D+R K+ I+ Q P F G+ + GL + +A+ + ++
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLEN-----RAVPRPEM 120
Query: 1332 KTTISSLPNKLD--SSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA 1389
+ + + + E N S GQ+Q + +L +I++LDE+ + +D A
Sbjct: 121 IKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE 180
Query: 1390 ILQRIIR--QEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME 1439
+ ++IR ++ +N TVI++ H + +D V+VL GKLL P ++
Sbjct: 181 QILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232
|
Length = 282 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 6e-14
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 21/235 (8%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
VLK I +G + + G TGSGKT+L+ + +EP+ G I G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK-CQLKTTISSLPNKLDSSVSDEG 1350
++S Q + G+++ N+ G+ D+ +K++ K CQL+ I+ P K ++ + + G
Sbjct: 99 RISFSSQFSWIMPGTIKENI-IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGG 157
Query: 1351 ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA-ILQRIIRQEFSNCTVITVAH 1409
S GQR L R + K + +LD +D T+ I + + + +N T I V
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTS 217
Query: 1410 RVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY-----WSSCRRNS 1459
++ + +D +++L G Y S+L FS + Y +S+ RRNS
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFSAERRNS 272
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 6e-14
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 24/219 (10%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
L + G+ V ++G +GSGK+TL+ + L +P G I ++G D + +D
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDR-- 72
Query: 1292 KLSIIPQEPTLFRG-SVRTN-------LDPLGLYSDDEIWKALEKCQLKTTISSLPNKLD 1343
K+ + Q LF+ +VR N + + LE QL+ PN+L
Sbjct: 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQL- 131
Query: 1344 SSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ--EFSN 1401
S GQRQ L R L ++L+LDE ++D+ L+ +R+ + +
Sbjct: 132 ----------SGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH 181
Query: 1402 CTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
T + V H ++ +D ++V+S GK+ + P ++ +
Sbjct: 182 VTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 6e-14
Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 33/253 (13%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG-- 1271
G I + L++ Y N VL ++ G + ++G++G GKTTL+ A+ V+ AG
Sbjct: 4 GGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 1272 GSILIDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNLDPLGLYS--------DDEI 1322
G I I D+ + L+++ Q LF V N+ GL + + +
Sbjct: 62 GRIAIADRDLTH--APPHKRGLALLFQNYALFPHLKVEDNV-AFGLRAQKMPKADIAERV 118
Query: 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
AL+ L + LP +L S G +Q + R + +L+LDE ++
Sbjct: 119 ADALKLVGLGDAAAHLPAQL-----------SGGMQQRIAIARAIAIEPDVLLLDEPLSA 167
Query: 1383 IDSATDAILQRIIR---QEFSNCTVITVAH-RVPTVIDSDMVMVLSYGKLLEYDEPSKLM 1438
+D+ A ++ I +E T++ V H + + +D ++ G+L + EP L
Sbjct: 168 LDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227
Query: 1439 ETNSSFSKLVAEY 1451
+ + AE+
Sbjct: 228 DAPA--DGFAAEF 238
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (179), Expect = 6e-14
Identities = 60/229 (26%), Positives = 115/229 (50%), Gaps = 17/229 (7%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS- 1273
+I++R + Y + VLK I F E ++G +G GK+TL+ AL R+ + G+
Sbjct: 4 KIKIRGVNFFYHKHQ--VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 1274 ----ILIDGVDICSMGLK--DLRVKLSIIPQEPTLFRGSVRTNL--DP--LGLYSDDEIW 1323
+L+D +I S L +LR ++ ++ Q+P F S+ N+ P LG + +
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121
Query: 1324 KALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASI 1383
+ +EK + ++L +++ ++ G S GQ+Q C+ RVL ++++DE +++
Sbjct: 122 EVVEKSLRQ---AALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSAL 178
Query: 1384 DSATDAILQRIIRQEFSNCTVITVAHRVPTVI-DSDMVMVLSYGKLLEY 1431
D + ++ ++++ N T+ V H + SD L G L+EY
Sbjct: 179 DPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY 227
|
Length = 251 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 6e-14
Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 55/203 (27%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
+R V+ +++ + + + G VG G++ L A+ G P SG + L G
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 660 -IAYVS----QTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714
IAYV + + S+ +NI +
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENIA---------------------------------LS 102
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL 774
LSGG +Q++ LAR + D + + D+P VD A ++ A K V+L
Sbjct: 103 SL---LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLL 159
Query: 775 VTHQV-EFLSEVDRILVLEGGQI 796
++ ++ E L DRILV+ G+I
Sbjct: 160 ISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 6e-14
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 39/219 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSL---LYAILGEIP--KISGTVNLYGSIAYVSQTS 667
L+ +NL I + A+ G G GKS+ L ++ +P K++G +N GS +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 668 WI----------QSG-----SIRDNILYG--------KPMDKARYDKAIKACALDKDINN 704
+ Q G SI DN+ YG K + +K++K AL ++ +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL-FNECV 763
H + L+LSGGQ+QR+ +ARA+ + D+ L D+P SA+D +T E +
Sbjct: 148 RLH-------TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDP--VSTRKIEELI 198
Query: 764 MAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGN 801
+ EK T+++VTH ++ + V D+ G++ + +
Sbjct: 199 LKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECND 237
|
Length = 259 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 7e-14
Identities = 58/237 (24%), Positives = 108/237 (45%), Gaps = 24/237 (10%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658
L GV+L ++ + + G GAGK++LL AI G + +GTV + G
Sbjct: 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAA 75
Query: 659 --SIAYVSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKA--CALDKDINNFDHGDLTEI 713
+A V Q TS +R + G+ ++R+D + A+++ + + +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAME---RTGVAQF 132
Query: 714 GQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV 772
R + +LSGG++QR+ LARA+ + L D+P +++D + + KT
Sbjct: 133 ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTA 192
Query: 773 ILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT---AFEQLVNAHRDAITG 825
+ H ++ + D +++L G++ +G ++L A T AF+ D TG
Sbjct: 193 VAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAFDARTAVGTDPATG 249
|
Length = 402 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 22/194 (11%)
Query: 1221 LKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVD 1280
+ Y+ +L ++ G + + G+ G+GKTTL L L++ + GSIL++G
Sbjct: 5 ISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP 63
Query: 1281 ICSMGLKDLRVKLSIIPQEPT--LFRGSVRTNLDPLGLYSDDEIWKALEK--CQLKTTIS 1336
I + K+ R + + Q+ LF SVR L L E+ E+ LK
Sbjct: 64 IKA---KERRKSIGYVMQDVDYQLFTDSVREEL----LLGLKELDAGNEQAETVLKD--- 113
Query: 1337 SLPNKLDSSVSDEGENW--SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRI 1394
LD E S GQ+Q + LL +L+ DE + +D + +
Sbjct: 114 -----LDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGEL 168
Query: 1395 IRQEFSNCTVITVA 1408
IR+ + + V
Sbjct: 169 IRELAAQGKAVIVI 182
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 44/246 (17%)
Query: 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE 646
L + S+ G F A L V+L+I+ + + + G G+GKS+L + G
Sbjct: 3 LLSVRNLSIVYGGGKF------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL 56
Query: 647 IPKISGTVNLYGS--------------IAYVSQ---TSWIQSGSIRDNI---LYGKPMDK 686
SG++ L G + V Q +S ++ + L + K
Sbjct: 57 EKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSK 116
Query: 687 A--RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
+ R + + L + +R LSGGQ+QRI +ARA+ + + + D
Sbjct: 117 SQQRIAELLDQVGLPPSFLD----------RRPHELSGGQRQRIAIARALIPEPKLLILD 166
Query: 745 DPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQ---VEFLSEVDRILVLEGGQITQSG 800
+P SA+D A + N + E+ T + ++H VE + DRI V++ GQI + G
Sbjct: 167 EPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC--DRIAVMDNGQIVEIG 224
Query: 801 NYQELL 806
+ELL
Sbjct: 225 PTEELL 230
|
Length = 252 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 25/206 (12%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE++ L + VLKGI T +G V ++G +GSGK+TL+ + L EP G+I+
Sbjct: 1 IEIKNLHKSFGDFH--VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 1276 IDGVDICSMG--LKDLRVKLSIIPQEPTLF-RGSVRTN--LDP---LGLYSDDEIWKA-- 1325
IDG+ + + +LR K+ ++ Q+ LF +V N L P G+ + +A
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALE 118
Query: 1326 -LEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
LEK L + P +L S GQ+Q + R L ++++ DE +++D
Sbjct: 119 LLEKVGLADKADAYPAQL-----------SGGQQQRVAIARALAMNPKVMLFDEPTSALD 167
Query: 1385 SAT-DAILQRIIRQEFSNCTVITVAH 1409
+L + T++ V H
Sbjct: 168 PELVGEVLDVMKDLAEEGMTMVVVTH 193
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-13
Identities = 53/194 (27%), Positives = 98/194 (50%), Gaps = 10/194 (5%)
Query: 1239 TFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQ 1298
++G V ++G +G+GK+TL++ + +EPA GSI ++ GL + +S++ Q
Sbjct: 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSMLFQ 77
Query: 1299 EPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357
E LF +VR N+ LGL+ ++ A ++ ++ + + + E S GQ
Sbjct: 78 ENNLFAHLTVRQNIG-LGLHPGLKL-NAEQQEKVVDAAQQV--GIADYLDRLPEQLSGGQ 133
Query: 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVI 1415
RQ L R L++ N IL+LDE +++D + +++Q S T++ V H +
Sbjct: 134 RQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDAR 193
Query: 1416 DS-DMVMVLSYGKL 1428
+ V+S GK+
Sbjct: 194 AIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-13
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 23/165 (13%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
VL G+ + EG+ VG+VG G+GKTTL+ A+ + P G++L+ G D+ ++ +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 1292 KLSIIPQEPTL-FRGSVR-----------TNLDPLGLYSDDEIWKALEKCQLKTTISSLP 1339
+++ +PQ+ +L F VR + D D A+E+ +T ++
Sbjct: 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWT--ETDR--AAVERAMERTGVAQFA 133
Query: 1340 NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
++ +S+ S G+RQ L R L + +L+LDE AS+D
Sbjct: 134 DRPVTSL-------SGGERQRVLLARALAQATPVLLLDEPTASLD 171
|
Length = 402 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 1e-13
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 27/194 (13%)
Query: 627 AVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------IAYVSQTS---WIQSGS 673
A+ G G+GKS+L A++G + SG +++ G +AYV Q+ W
Sbjct: 37 ALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVL 96
Query: 674 IRDNILYGK--PMDKAR----YDKAIKACALDK-DINNFDHGDLTEIGQRGLNLSGGQKQ 726
+ D ++ G+ M R D+ I AL + D+ F H +IG+ LSGGQK+
Sbjct: 97 VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH---RQIGE----LSGGQKK 149
Query: 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVD 786
R+ LARA+ + L D+PF+ VD T A + + E KT+++ TH + ++E
Sbjct: 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFC 209
Query: 787 RILVLEGGQITQSG 800
V+ G + SG
Sbjct: 210 DYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 31/244 (12%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PA 1270
IE L++ Y N V+KG+ + ++G +G GK+TL+ RL+E
Sbjct: 5 IETVNLRVYYGSNH--VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62
Query: 1271 GGSILIDGVDICSMGLKDLRV--KLSIIPQEPTLF-RGSVRTNLDPLGL------YSDDE 1321
G + + G +I S + + V ++ ++ Q P F ++ N+ +G+ S E
Sbjct: 63 EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNV-AIGVKLNGLVKSKKE 121
Query: 1322 IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381
+ + +E K ++L +++ ++D N S GQRQ + R L + +IL++DE A
Sbjct: 122 LDERVEWALKK---AALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTA 178
Query: 1382 SIDSATDAILQRIIRQEFSNCTVITVAH------RVPTVIDSDMVMVLSYGKLLEYDEPS 1435
+ID A ++ ++ + T++ V H RV SD V L GKL+E
Sbjct: 179 NIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARV-----SDYVAFLYLGKLIEVGPTR 233
Query: 1436 KLME 1439
K+ E
Sbjct: 234 KVFE 237
|
Length = 253 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 1e-13
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 39/226 (17%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGE-IPK--ISGTVNLYGSIAYVSQT 666
L V+LD + A+ G G+GKS+LL +I + + P+ I+G++ G Y +T
Sbjct: 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79
Query: 667 SWIQ---------------SGSIRDNILYGKPM----DKARYDKAIKACALDKDINNFDH 707
+ SI +N++YG + DK D+A++ I +
Sbjct: 80 DTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD--- 136
Query: 708 GDLTEIGQR----GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
E+ R L LSGGQ+QR+ +AR + I L D+P SA+D +A + E
Sbjct: 137 ----EVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI--EET 190
Query: 764 MAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
+ L+ T++LVT ++ S + DR G + + + +++ +
Sbjct: 191 LLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236
|
Length = 252 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 59/230 (25%), Positives = 99/230 (43%), Gaps = 33/230 (14%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + Y PN L GI + S G V +VG +G+GK+TL+ +++ P G+I
Sbjct: 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1276 IDGVDICSMGLKD-----LRVKLSIIPQEPTLFRGSVRTNLDPLGL------YSDDEIWK 1324
++G D+ L+ LR K+ ++ Q+ L R + + EI K
Sbjct: 60 VNGQDVS--DLRGRAIPYLRRKIGVVFQDFRLL--PDRNVYENVAFALEVTGVPPREIRK 115
Query: 1325 ----ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEAN 1380
ALE L +LP +L S G++Q + R ++ IL+ DE
Sbjct: 116 RVPAALELVGLSHKHRALPAEL-----------SGGEQQRVAIARAIVNSPTILIADEPT 164
Query: 1381 ASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID--SDMVMVLSYGKL 1428
++D T + ++++ T + VA ++D V+ L GKL
Sbjct: 165 GNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 1e-13
Identities = 57/217 (26%), Positives = 108/217 (49%), Gaps = 15/217 (6%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE--PAG---GSILIDGVDICSMGLK 1287
LKGI+ E + V +G +G GK+T + R+ + PA G I IDG +I G++
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 1288 --DLRVKLSIIPQEPTLFRGSVRTN----LDPLGLYSDDEIWKALEKCQLKTTISSLPNK 1341
+LR + ++ Q P F S+ N L G+ + I + +E+ LK ++L ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEE-TLKG--AALWDE 135
Query: 1342 LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSN 1401
+ + + S GQ+Q C+ R + +L++DE +++D + A ++ +I + +
Sbjct: 136 VKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKD 195
Query: 1402 CTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
T++ V H + SD G+++EYD+ K+
Sbjct: 196 YTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232
|
Length = 250 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 1e-13
Identities = 65/209 (31%), Positives = 101/209 (48%), Gaps = 18/209 (8%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-----------IA 661
L ++LDI Q +A+ G G+GK++LL I G + SG + +G+ +
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 662 YVSQT-SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNF-DHGDLTEIGQR-GL 718
+V Q + + ++ DNI +G + R + A A+ + + L + R
Sbjct: 78 FVFQHYALFRHMTVFDNIAFGLTVLPRR--ERPNAAAIKAKVTQLLEMVQLAHLADRYPA 135
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTH 777
LSGGQKQR+ LARA+ + I L D+PF A+DA L E K T + VTH
Sbjct: 136 QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTH 195
Query: 778 QVEFLSEV-DRILVLEGGQITQSGNYQEL 805
E EV DR++V+ G I Q+G ++
Sbjct: 196 DQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 2e-13
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 20/224 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ELR + + L G++ T G ++G G+GK+TL+ L + P G IL
Sbjct: 9 LELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL 66
Query: 1276 IDGVDICSMGLKD-LRVKLSIIPQEPTLFRG-SVRTNL-------DPLGLYSDDEIWKAL 1326
IDG + +D L ++ + QE +L SV N+ GL KA+
Sbjct: 67 IDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID----RKAM 122
Query: 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
+ + + ++ L LD + S QRQ+ + R L R+L+LDE A++
Sbjct: 123 RR-RARELLARL--GLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVK 179
Query: 1387 TDAILQRIIRQ-EFSNCTVITVAHRVPTVID-SDMVMVLSYGKL 1428
L +IR+ + +I ++HR+ V + +D + VL G++
Sbjct: 180 ETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRV 223
|
Length = 500 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 42/243 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
L ++L + + A+ G G GKS+LL + SGTV L
Sbjct: 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77
Query: 660 IAYVSQTSWIQSG-SIRDNILYGK-----------PMDKARYDKAIKACALDKDINNFDH 707
+A + Q G ++R+ + YG+ D AR ++A++ ++
Sbjct: 78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-------- 129
Query: 708 GDLTEIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+ R L +LSGGQ+QR LA + D + L D+P + +D + L
Sbjct: 130 ----HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN 185
Query: 767 LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL---LAGTAFEQLVNAHRDA 822
+ KTV+ V H + S D ++VL G + G +E++ L T F+ H +
Sbjct: 186 TQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFDVEAEIHPEP 245
Query: 823 ITG 825
++G
Sbjct: 246 VSG 248
|
Length = 255 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-13
Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 29/221 (13%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL--- 1289
L ++ G GV+G +G+GK+TLI + L P GS+++DG D+ ++ +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 1290 RVKLSIIPQEPTLFRGSVRTNLD----PLGLYSDDEIWKALEKCQLKTT----ISSLPNK 1341
R ++ +I Q L S RT PL L + + ++ + K T + L +K
Sbjct: 81 RRQIGMIFQHFNLL--SSRTVFGNVALPLELDNTPK-----DEIKRKVTELLALVGLGDK 133
Query: 1342 LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATD----AILQRIIRQ 1397
DS S N S GQ+Q + R L ++L+ DEA +++D AT +L+ I R+
Sbjct: 134 HDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRR 189
Query: 1398 EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
T++ + H + V D V V+S G+L+E S++
Sbjct: 190 --LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 34/210 (16%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA 661
+ + + + GV+ IK + + + G G GKS+L ILG SG + G
Sbjct: 18 KGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG--- 74
Query: 662 YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD-INNFDHGDLTEIGQRGLNL 720
+D K + R + ++ L ++ + + H L
Sbjct: 75 -------------KDITKLSKEERRERVLELLEKVGLPEEFLYRYPH-----------EL 110
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTH 777
SGGQ+QRI +ARA+ + + + D+P SA+D A + N ++ L+++ T + ++H
Sbjct: 111 SGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILN--LLKDLQEELGLTYLFISH 168
Query: 778 QVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ + + DRI V+ G+I + G +E+
Sbjct: 169 DLSVVRYISDRIAVMYLGKIVEIGPTEEVF 198
|
Length = 268 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 56/235 (23%), Positives = 100/235 (42%), Gaps = 55/235 (23%)
Query: 1216 IELRQLKIRY-------RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268
+E++ LK + + + G++ + EG +G+VG +G GK+TL + L E
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK 1328
P G IL +G DI + K+ R + + + LEK
Sbjct: 65 PTSGEILFEGKDITKL-SKEERRE----------------------------RVLELLEK 95
Query: 1329 CQLKT-TISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID-SA 1386
L + P++L S GQRQ + R L +++V DE +++D S
Sbjct: 96 VGLPEEFLYRYPHEL-----------SGGQRQRIGIARALALNPKLIVADEPVSALDVSV 144
Query: 1387 TDAILQRI--IRQEFSNCTVITVAHRVPTV--IDSDMVMVLSYGKLLEYDEPSKL 1437
IL + +++E T + ++H + V I SD + V+ GK++E ++
Sbjct: 145 QAQILNLLKDLQEEL-GLTYLFISHDLSVVRYI-SDRIAVMYLGKIVEIGPTEEV 197
|
Length = 268 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 3e-13
Identities = 57/243 (23%), Positives = 104/243 (42%), Gaps = 45/243 (18%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+R + + + I+ +G V ++G +G GKTTL+ + +P+ G IL
Sbjct: 6 LEIRNVSKSFGDFT--AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 1276 IDGVDICSMGLKDL---RVKLSIIPQEPTLF-RGSVRTN----LDPLGLYSDDEIWK--- 1324
+DG DI D+ + + ++ Q LF +V N L EI
Sbjct: 64 LDGEDI-----TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118
Query: 1325 -ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASI 1383
ALE L+ P++L S GQ+Q L R L+ ++L+LDE +++
Sbjct: 119 EALELVGLEGFADRKPHQL-----------SGGQQQRVALARALVPEPKVLLLDEPLSAL 167
Query: 1384 DSATDAILQRIIR--QEFSNCTVITVAHRVPTVID-------SDMVMVLSYGKLLEYDEP 1434
D+ +++ ++ Q T + V H D SD + V++ G++ + P
Sbjct: 168 DAKLREQMRKELKELQRELGITFVYVTH------DQEEALAMSDRIAVMNDGRIEQVGTP 221
Query: 1435 SKL 1437
++
Sbjct: 222 EEI 224
|
Length = 352 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 3e-13
Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 39/204 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
L+G++LD + A+ G G GKS+ L + L I+G V+L G Y
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 668 WIQ---------------SGSIRDNILYGKPM----DKARYDKAI----KACALDKDINN 704
+Q SI +N++YG + DKA D+A+ K A+ ++ +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
H + L+LSGGQ+QR+ +AR + D+ L D+P SA+D ++ + N ++
Sbjct: 141 HLH-------ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIEN-MLL 192
Query: 765 AALEKKTVILVTHQVEFLSEVDRI 788
++ T+ILVTH + + RI
Sbjct: 193 ELRDQYTIILVTHS---MHQASRI 213
|
Length = 252 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-13
Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 25/210 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---------IAYV 663
L+GVNL I+ + I++ G G GKS+LL I G SG V L G +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 664 SQTSWIQSGSIRDNILYGKPMDKARYD--KAIKACALDKDIN--NFDHGDLTEIGQRGLN 719
S + ++R+NI +D+ D K+ + +++ I GQ
Sbjct: 61 QNYSLLPWLTVRENIALA--VDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ---- 114
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQ 778
LSGG KQR+ +ARA+ + L D+PF A+DA T L E + E + TV++VTH
Sbjct: 115 LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
Query: 779 VE---FLSEVDRILVLEGGQITQSGNYQEL 805
V+ LS DR+++L G G E+
Sbjct: 175 VDEALLLS--DRVVMLTNGPAANIGQILEV 202
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 3e-13
Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 26/216 (12%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658
L V+LDI ++ G GAGKS+LL + + K SG + + G
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74
Query: 659 -SIAYVSQTSWIQSG-SIRDNILYGK-PMDKARYDKAIKACALDKDINN--FDHGDLTEI 713
++ + Q + I S ++RD + +G+ P + R K D+ I N ++ L ++
Sbjct: 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKE------DRRIINEAIEYLHLEDL 128
Query: 714 GQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKT 771
R L+ LSGGQ+QR +A + D D L D+P + +D + + A E KT
Sbjct: 129 SDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKT 188
Query: 772 VILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806
+++V H + F S D I+ L+ G++ + G+ E++
Sbjct: 189 IVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224
|
Length = 252 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 3e-13
Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 45/247 (18%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL---GEI 647
S + V + GN+ L G++LD + + A+ G G GKS+ L + +I
Sbjct: 6 SAKDVHLSYGNYE--------ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDI 57
Query: 648 P--KISGTV-----NLYGS----------IAYVSQTSWIQSGSIRDNILYG--------K 682
KI+G + N+YGS + V Q S+ DN+ YG K
Sbjct: 58 ENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDK 117
Query: 683 PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742
+ R ++++K A+ K+ + + + SGGQ+QRI +ARA+ + L
Sbjct: 118 ELIDQRVEESLKQAAIWKETKD-------NLDRNAQAFSGGQQQRICIARALAVRPKVVL 170
Query: 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGN 801
D+P SA+D +++ + E +M + T I+VTH ++ + D+ L G + ++G
Sbjct: 171 LDEPTSALDPISSSEI-EETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGP 229
Query: 802 YQELLLA 808
+E+ +A
Sbjct: 230 TEEMFIA 236
|
Length = 251 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 40/193 (20%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI--------AY 662
P L +NL ++ + + V G G GK++LL I G +P G++ L G
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGV 74
Query: 663 VSQTS----WIQSGSIRDNILYG---KPMDKA-RYDKAIKACALDKDINNFDHGDLTEIG 714
V Q W +++DN+ +G ++K R + A + L
Sbjct: 75 VFQNEGLLPWR---NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKV---------GLEGAE 122
Query: 715 QRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK---- 769
+R + LSGGQ+QR+ +ARA+ + + L D+PF A+DA T E + L K
Sbjct: 123 KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT-----REQMQTLLLKLWQE 177
Query: 770 --KTVILVTHQVE 780
K V+L+TH +E
Sbjct: 178 TGKQVLLITHDIE 190
|
Length = 255 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 4e-13
Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 32/213 (15%)
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-------------GSI 660
+ +NLDI + + G G GKS+LL I G SG +L+ +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG--DLFIGEKRMNDVPPAERGV 77
Query: 661 AYVSQTSWIQSG-SIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
V Q+ + S+ +N+ +G + K ++ + A ++ H L + ++
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVA---EVLQLAH--LLD--RK 130
Query: 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVI 773
LSGGQ+QR+ + R + + ++L D+P S +DA + E ++ L K+ T+I
Sbjct: 131 PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE--ISRLHKRLGRTMI 188
Query: 774 LVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
VTH QVE ++ D+I+VL+ G++ Q G EL
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 4e-13
Identities = 66/246 (26%), Positives = 107/246 (43%), Gaps = 36/246 (14%)
Query: 1216 IELRQLKIRYRPNAPL---VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I L + PL L G++ +EG V V+G G+GK+TL++A+ ++P G
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEP--------TLF--------RGSVRTNLDPLGL 1316
ILIDGVD+ + L+ + Q+P T+ RG R L
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALN- 120
Query: 1317 YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVL 1376
E ++ + +L L L++ +SD S GQRQ L L +IL+L
Sbjct: 121 ----ERRRSSFRERLA----RLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLL 172
Query: 1377 DEANASIDSATDAIL----QRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGK-LLE 1430
DE A++D T + +I+ E T + V H + +D + +++L GK +L+
Sbjct: 173 DEHTAALDPKTAEFVMELTAKIV--EEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230
Query: 1431 YDEPSK 1436
K
Sbjct: 231 VTGEEK 236
|
Length = 263 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 35/235 (14%)
Query: 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652
++ +E ++S + L+ +++ + + G GAGKS+L+ I I G
Sbjct: 2 NEIEFKEVSYSSFGKE---ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG 58
Query: 653 TV-------------NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAI----KA 695
++ +L I V Q + G+++DNI YG PM K + +
Sbjct: 59 SILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG-PMLKGEKNVDVEYYLSI 117
Query: 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755
L+K+ D NLSGG+ QR+ +AR + N+ ++ L D+P SA+D T+
Sbjct: 118 VGLNKEYATRDVK----------NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TS 166
Query: 756 ATLFNECVMAALEKK--TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
+ E ++ K TVI +TH +E + D L G + + +
Sbjct: 167 TEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221
|
Length = 241 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 5e-13
Identities = 53/215 (24%), Positives = 99/215 (46%), Gaps = 16/215 (7%)
Query: 1249 VGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MGLKDLRVKLSIIPQEPT 1301
+G +G GK+T + R+ + G + IDG+D+ S + LR K+ ++ Q+P
Sbjct: 37 IGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96
Query: 1302 LFRGSVRTNL--DPL--GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357
F S+ N+ P GL + + K E + T L +L + D S GQ
Sbjct: 97 PFPKSIYDNVAYGPKLHGLAKNKK--KLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQ 154
Query: 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID- 1416
+Q C+ R + + +L++DE +++D +++ +I++ N T+I V H +
Sbjct: 155 QQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKV 214
Query: 1417 SDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451
SD V G+++EY+ ++ + S Y
Sbjct: 215 SDRVAFFQSGRIVEYNTTQEIFKNPQ--SSKTKRY 247
|
Length = 251 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 5e-13
Identities = 58/232 (25%), Positives = 108/232 (46%), Gaps = 19/232 (8%)
Query: 1216 IELRQLKIRYRPNAP-LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
IE++ L +Y+ + L ++ +G + ++G GSGK+T + + L+E G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEP-TLFRGS-----VRTNLDPLGLYSDDEIWKALEK 1328
+IDG + + D+R K+ ++ Q P F G+ V L+ G+ ++ + E
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 1329 CQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATD 1388
+L + + E S GQ+Q + + R +I++LDEA + +D
Sbjct: 125 LEL-VGMQDFKER-------EPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176
Query: 1389 AILQRI---IRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKL 1437
L + IR ++ TVI++ H + V SD V+V+ G++ P +L
Sbjct: 177 LELIKTIKGIRDDY-QMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 5e-13
Identities = 73/245 (29%), Positives = 119/245 (48%), Gaps = 41/245 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLL--YAILGE-IP--KISGTV-----NLYGS--- 659
++ V LDI Q A G G GKS++L + L + IP ++ G V NLY
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 660 -------IAYVSQTSWIQSGSIRDNILYGKPMDKARYD------KAIKACALDKDINNFD 706
I V Q SI DNI YG ++ + D ++++ AL ++ +
Sbjct: 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-- 143
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
++ Q GL+LSGGQ+QR+ +ARA+ ++ L D+P SA+D +TL E +M
Sbjct: 144 -----KLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDP--ISTLRIEELMHE 196
Query: 767 L-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN-----AHR 820
L E+ T+I+VTH ++ + V + ++T+ G L+ E++ N A R
Sbjct: 197 LKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNSPQQQATR 256
Query: 821 DAITG 825
D ++G
Sbjct: 257 DYVSG 261
|
Length = 264 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 1e-12
Identities = 52/233 (22%), Positives = 104/233 (44%), Gaps = 19/233 (8%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
LR ++ + L++ G+ T G+ G++G GSGK+TL+ L + P G++ +
Sbjct: 1 GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60
Query: 1277 DGVDICSMGLKDLRVKLSIIPQE-----PTLFRGSVRTNLDP----LGLYSDDEIWKALE 1327
GVD+ + + +++++ Q+ P R V P S + ++
Sbjct: 61 AGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDA-AVVD 119
Query: 1328 KCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID-SA 1386
+ +T +S L ++ S++ S G+RQ + R L + ++L+LDE +D A
Sbjct: 120 RALARTELSHLADRDMSTL-------SGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA 172
Query: 1387 TDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438
L + + TV+ H + D V+VL G+++ P +++
Sbjct: 173 QLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 50/217 (23%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
+L G++ G + ++G G+GK+TL+ AL + P G + ++GV + S ++L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 1292 KLSIIPQE-----PTLFRGSVRTNLDPLGLYSD-DEIWKALEKCQLKTTISSLPNKLDSS 1345
+++PQ P + V+ P + +E + + T +S L + +
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRT 135
Query: 1346 VSDEGENWSAGQRQLFCLGRVLLK------RNRILVLDEANASIDSATDAILQRIIRQEF 1399
+ S G++Q L RVL + R L LDE +++D A R+ RQ
Sbjct: 136 L-------SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA 188
Query: 1400 SN-CTVITVAHRVP-TVIDSDMVMVLSYGKLLEYDEP 1434
V+ V H + +D +++L G+++ P
Sbjct: 189 REGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225
|
Length = 259 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 52/237 (21%), Positives = 103/237 (43%), Gaps = 31/237 (13%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650
+K++ +FS+ L+ V+ +I + +A+ G G+GKS++ + G +
Sbjct: 4 KSVMIKVENVSFSYPNSEN-NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ 62
Query: 651 SGTVNLYGSIAYVSQTSWIQS---------------GSIRDNILYG---KPMDKARYDKA 692
SG + + G I+ ++ D+I +G K + +
Sbjct: 63 SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDI 122
Query: 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
I A + ++ + + NLSGGQKQR+ +A + + +I +FD+ S +D
Sbjct: 123 IDDLAKKVGMEDY-------LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 753 HTAATLFNECVMAALEK---KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ +M L K KT+I +TH ++ D+++V G++ G +E+L
Sbjct: 176 KGKREIKK--IMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEIL 230
|
Length = 271 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 25/185 (13%)
Query: 633 GAGKSSLLYAILGEIPKISGTV------------NLYGSIAYVSQT-SWIQSGSIRDNIL 679
GAGK++L+ + P SGT+ L I Y+ Q + ++R+ +
Sbjct: 35 GAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLD 94
Query: 680 YG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736
Y K + + + + +N D +IG LSGG ++R+ +A+A+
Sbjct: 95 YIAWLKGIPSKEVKARV--DEVLELVNLGDRAK-KKIGS----LSGGMRRRVGIAQALVG 147
Query: 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQ 795
D I + D+P + +D N E + VIL TH VE + + +++ VL G+
Sbjct: 148 DPSILIVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHIVEDVESLCNQVAVLNKGK 206
Query: 796 ITQSG 800
+ G
Sbjct: 207 LVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 52/215 (24%), Positives = 103/215 (47%), Gaps = 24/215 (11%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658
+ V+L++ + + + G GAGK++ Y I+G + SG + L
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 659 --SIAYVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI-G 714
I Y+ Q + I ++ DNI+ + + KA + LD + F +T +
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFH---ITHLRD 134
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV-I 773
+ +LSGG+++R+++ARA+ + L D+PF+ VD + ++ L+ + + +
Sbjct: 135 SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR--IIKHLKDRGIGV 192
Query: 774 LVT-HQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
L+T H V E L DR ++ G++ G+ +E++
Sbjct: 193 LITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 64/226 (28%), Positives = 96/226 (42%), Gaps = 44/226 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYA------------ILGEIPKISG-------- 652
L +NLDI + A G G GKS+ L + GE+ I G
Sbjct: 21 LFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL-DIDGIDVYSVDT 79
Query: 653 -TVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
V L + V Q SI DN+ YG + +K K ++ LT
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNK--------KKLDEIVEKSLT 131
Query: 712 EIG----------QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+G LSGGQ+QR+ +ARA+ + L D+P SA+D AT E
Sbjct: 132 SVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP--VATNVIE 189
Query: 762 CVMAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
++ L+K T+I+VTH ++ +V DR+ + G+I + QE+
Sbjct: 190 NLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
|
Length = 251 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 61/214 (28%), Positives = 107/214 (50%), Gaps = 23/214 (10%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM---GLKD 1288
VL ++ + EG VG++GR+G GK+TL L L +PA G++ G D+ + +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 1289 LRVKLSIIPQE-PTLF--RGSVRTNL-DPLGLYSDDEIWKALEKCQLKTTISSLPN--KL 1342
R + ++ Q+ P+ R +VR + +PL + L++ + K I+ L + L
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTS------LDESEQKARIAELLDMVGL 139
Query: 1343 DSSVSDE-GENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA-ILQ--RIIRQE 1398
S +D+ S GQ Q + R L + +++VLDEA +++D A IL+ R ++Q
Sbjct: 140 RSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA 199
Query: 1399 F-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430
F + IT H + V V V+ G+++E
Sbjct: 200 FGTAYLFIT--HDLRLVQSFCQRVAVMDKGQIVE 231
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-12
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 34/214 (15%)
Query: 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG----LKDLRVKLSIIPQEP 1300
+ GR+GSGKTTLI + L P G I+++G + L + ++ + QE
Sbjct: 25 VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEA 84
Query: 1301 TLF-RGSVRTNLD--------PLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGE 1351
LF SVR NL S + + +E + + LP +L
Sbjct: 85 RLFPHLSVRGNLRYGMKRARPSERRISFERV---IELLGIGHLLGRLPGRL--------- 132
Query: 1352 NWSAGQRQLFCLGRVLLKRNRILVLDEANASID-SATDAI---LQRIIRQEFSNCTVITV 1407
S G++Q +GR LL R+L++DE A++D I L+R + EF ++ V
Sbjct: 133 --SGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER-LHAEF-GIPILYV 188
Query: 1408 AHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440
+H + V+ +D V+VL G++ +++ +
Sbjct: 189 SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 45/202 (22%), Positives = 96/202 (47%), Gaps = 12/202 (5%)
Query: 1247 GVVGRTGSGKTTLISALFRL---VEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303
++G +G GK+T + R+ + G + I+G D+ + + LR + ++ Q+P +F
Sbjct: 32 ALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91
Query: 1304 RGSVRTNLDPL----GLYSDDEIWKAL-EKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358
S+ N+ G+ + + +AL C K L ++ + S GQ+
Sbjct: 92 VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKV---GLFEEVKDKLKQNALALSGGQQ 148
Query: 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-S 1417
Q C+ R L + ++L+LDE +++D + +++ ++++ N ++I V H + +
Sbjct: 149 QRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVA 208
Query: 1418 DMVMVLSYGKLLEYDEPSKLME 1439
D G+L+E+ E + E
Sbjct: 209 DYTAFFHLGELIEFGESKEFFE 230
|
Length = 246 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 25/235 (10%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E R LK Y P+ LKGI +G V ++G G+GK+TL +++P G +L
Sbjct: 2 LETRDLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 1276 IDG--VDICSMGLKDLRVKLSIIPQEP--TLFRGSVRTNL--DPLGL-YSDDEIWK---- 1324
I G + L ++R + I+ Q P LF +V ++ PL L S +E+ K
Sbjct: 61 IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKE 120
Query: 1325 ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
AL+ ++ + P+ L S GQ++ + +L + I+VLDE + +D
Sbjct: 121 ALKAVGMEGFENKPPHHL-----------SGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
Query: 1385 S-ATDAILQRIIRQEFSNCTVITVAHRVPTV-IDSDMVMVLSYGKLLEYDEPSKL 1437
I++ + T+I H V V + +D V V+S GK+++ P ++
Sbjct: 170 PMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 54/230 (23%), Positives = 104/230 (45%), Gaps = 23/230 (10%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E+R L R+ + ++ G VG++G G+GKTTL + + +P+ G+++
Sbjct: 6 EVRGLSKRF--GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIF 63
Query: 1277 DGVDICSMGLKD-LRVKLSIIP--QEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLK 1332
G DI GL +L I Q LF G +V N+ +G ++ + L + + +
Sbjct: 64 RGRDI--TGLPPHRIARLGIARTFQITRLFPGLTVLENV-AVGAHARLGLSGLLGRPRAR 120
Query: 1333 TTISSLPNK---------LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASI 1383
+ L N S GQ++ + R L + ++L+LDE A +
Sbjct: 121 KEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGL 180
Query: 1384 -DSATDAILQRI--IRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLL 1429
T+ + + I +R T++ + H + V+ +D ++VL+YG+++
Sbjct: 181 NPEETEELAELIRELRDRG-GVTILLIEHDMKLVMGLADRIVVLNYGEVI 229
|
Length = 250 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 30/201 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-SGTVNLYGS------------ 659
L +NL I+ + A+ G G+GKS+LL I+G + K SG V L G
Sbjct: 14 LDDLNLTIEKGKMYAIIGESGSGKSTLL-NIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 660 -----IAYVSQT-SWIQSGSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
+ Y+ Q + I++ ++ +N+ L K + K + K +N
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK--- 129
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
Q+ LSGG++QR+ LARA+ + L D+P ++D + + + E K
Sbjct: 130 ----QKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGK 185
Query: 771 TVILVTHQVEFLSEVDRILVL 791
T+I+VTH E + DR++ L
Sbjct: 186 TIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 3e-12
Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 38/202 (18%)
Query: 623 AQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-----------SIAYVSQTSWIQ 670
+ A+ G G+GKS+LL I G E P+ SG V + G ++ + Q + +
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQ-SGRVLINGVDVTAAPPADRPVSMLFQENNLF 82
Query: 671 SG-SIRDNILYG-------KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722
+ ++ N+ G D+ +AI+ + + + LSG
Sbjct: 83 AHLTVEQNVGLGLSPGLKLTAEDR----QAIEVALARVGLAGLEK-------RLPGELSG 131
Query: 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDA---HTAATLFNECVMAALEKKTVILVTHQV 779
G++QR+ LAR + D + L D+PF+A+D L + + A K TV++VTHQ
Sbjct: 132 GERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD--LHAETKMTVLMVTHQP 189
Query: 780 EFLSEV-DRILVLEGGQITQSG 800
E + R++ L+ G+I G
Sbjct: 190 EDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 3e-12
Identities = 64/202 (31%), Positives = 94/202 (46%), Gaps = 38/202 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAY----- 662
L +NL I + A+ G G GKS+ L + L KI G V L G Y
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 663 ----------VSQTSWIQSGSIRDNILYGKPM----DKARYDK----AIKACALDKDINN 704
V Q SI DN+ YG + DK DK A+K AL ++ +
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD 139
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
++ + L LSGGQ+QR+ +AR + D+ L D+P SA+D +TL E +M
Sbjct: 140 -------DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP--ISTLKIEDLM 190
Query: 765 AALEKK-TVILVTHQVEFLSEV 785
L+K+ T+++VTH ++ S V
Sbjct: 191 VELKKEYTIVIVTHNMQQASRV 212
|
Length = 251 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 9/92 (9%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC--VMAAL--EKKTVILV 775
LSGGQ+QR+ +ARA+ + LFD+P SA+D L +E VM L E T+++V
Sbjct: 137 LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE----LRHEVLKVMQDLAEEGMTMVIV 192
Query: 776 THQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
TH++ F +V R++ ++ G+I + G+ Q L+
Sbjct: 193 THEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224
|
Length = 240 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 3e-12
Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 26/230 (11%)
Query: 1221 LKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG-- 1278
L RY+ + P VLKG+ FS G+VG G GK+TL L L+ P G++L G
Sbjct: 7 LWFRYQ-DEP-VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKP 64
Query: 1279 VDICSMGLKDLRVKLSIIPQEP------TLFRGSVRTNLDPLGLYSDDEIWKALEKCQLK 1332
+D GL LR +++ + Q+P T + +L LG+ + EI + +++
Sbjct: 65 LDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGV-PEAEITRRVDEALTL 123
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATD---- 1388
++ +S GQ++ + L+ + R L+LDE A +D A
Sbjct: 124 VDAQHFRHQPIQCLSH-------GQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176
Query: 1389 AILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
AI++RI+ Q N +I+ +H + + + SD V VL G++L + P ++
Sbjct: 177 AIIRRIVAQ--GNHVIIS-SHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223
|
Length = 271 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 3e-12
Identities = 67/236 (28%), Positives = 113/236 (47%), Gaps = 37/236 (15%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
IEL+ + + + L ++ G GV+G +G+GK+TLI + L P G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1274 ILIDGVDICSMGLKDLRV---KLSIIPQEPTLFRGSVRTNLD----PLGL--YSDDEIWK 1324
+L+DG D+ ++ K+LR ++ +I Q L S RT D PL L EI
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLL--SSRTVFDNVALPLELAGTPKAEI-- 117
Query: 1325 ALEKCQLKTTISSLPNKLD-SSVSDEGE----NWSAGQRQLFCLGRVLLKRNRILVLDEA 1379
K ++ L L+ +SD+ + S GQ+Q + R L ++L+ DEA
Sbjct: 118 -------KARVTEL---LELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEA 167
Query: 1380 NASIDSA-TDAILQ--RIIRQEFSNCTVITVAHRVPTVIDS--DMVMVLSYGKLLE 1430
+++D A T +IL+ + I +E T++ + H + V+ D V V+ G+L+E
Sbjct: 168 TSALDPATTRSILELLKDINREL-GLTIVLITHEM-DVVKRICDRVAVIDAGRLVE 221
|
Length = 343 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 3e-12
Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 28/244 (11%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL-----VEP 1269
++E R L Y L I+ F + ++G +G GK+T + L R+
Sbjct: 6 KMEARGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR 63
Query: 1270 AGGSILIDGVDICSMGLK--DLRVKLSIIPQEPTLFRGSVRTN----LDPLGLYSDDEIW 1323
G IL+DG +I + +LR ++ ++ Q+P F S+ N L G+ +
Sbjct: 64 VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLA 123
Query: 1324 KALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASI 1383
+ +E+ L+ ++L +++ + + S GQ+Q C+ R L +L++DE +++
Sbjct: 124 ERVER-SLRH--AALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASAL 180
Query: 1384 DSATDAILQRIIRQEFSNCTVITVAH------RVPTVIDSDMVMVLSYGKLLEYDEPSKL 1437
D ++ +I + + T+I V H RV SD+ GKL+E P++
Sbjct: 181 DPIATQKIEELIHELKARYTIIIVTHNMQQAARV-----SDVTAFFYMGKLIEVG-PTEQ 234
Query: 1438 METN 1441
+ T
Sbjct: 235 IFTR 238
|
Length = 253 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 3e-12
Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 18/207 (8%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--VEPA-- 1270
RIE+ L + +LK + + + ++G +G GK+T I L R+ + P
Sbjct: 3 RIEVENLNTYFDDAH--ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 1271 -GGSILIDGVDIC--SMGLKDLRVKLSIIPQEPTLFRGSVRTN----LDPLGLYSDDEIW 1323
G I +DGVDI ++ + +LR K+ ++ Q+P F S+ N L G +D I
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 1324 KALEKCQLKTTI-SSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
+ +E+ + + +KLD S S GQ+Q C+ R + ++++DE ++
Sbjct: 121 ERVEESLKAAALWDEVKDKLDKSAL----GLSGGQQQRLCIARTIAVSPEVILMDEPCSA 176
Query: 1383 IDSATDAILQRIIRQEFSNCTVITVAH 1409
+D + ++ +I + + T++ V H
Sbjct: 177 LDPISTTKIEDLIHKLKEDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 3e-12
Identities = 60/236 (25%), Positives = 113/236 (47%), Gaps = 28/236 (11%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL---VEPA--GGSILIDGVDICSMG-- 1285
LKG++ E + ++G +G GK+T + L R+ ++ A GS+ +DG DI G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLD--P--------------LGLYSDDEIWKALEKC 1329
L +LR ++ ++ Q P F S+R N+ P LG D + +E+
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERS 180
Query: 1330 QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA 1389
+ ++L ++++ + D S GQ+Q C+ R L ++++DE +++D +
Sbjct: 181 LRQ---AALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATS 237
Query: 1390 ILQRIIRQEFSNCTVITVAHRVPTV--IDSDMVMVLSYGKLLEYDEPSKLMETNSS 1443
++ +I + TV+ V H + I + L+ G+L+EYD+ K+ E S
Sbjct: 238 KIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFENPES 293
|
Length = 305 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 4e-12
Identities = 60/239 (25%), Positives = 101/239 (42%), Gaps = 52/239 (21%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKI-AVCGSVGAGKSSLLYAILGEIPKISG 652
+ + + GNF+ D +P A+ I A+ G G+GK+SL+ I G G
Sbjct: 5 NFRQRLGNFALDANFTLP-----------ARGITALFGPSGSGKTSLINMIAGLTRPDEG 53
Query: 653 TVNLYG-----------------SIAYVSQTSWI-QSGSIRDNILYG-KPMDKARYDKAI 693
+ L G I YV Q + + ++R N+ YG +A++D+ +
Sbjct: 54 RIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLV 113
Query: 694 KACALDKDINNFDHGDLTEIG----QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
L I + LSGG+KQR+ + RA+ ++ L D+P ++
Sbjct: 114 ---------------ALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158
Query: 750 VDAHTAATLFNECVMAALEKKTVIL-VTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
+D + E IL V+H + E L DR++VLE G++ SG +E+
Sbjct: 159 LDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVW 217
|
Length = 352 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 4e-12
Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 29/230 (12%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISG 652
S+++ N + A L + LD + + + G GAGKSSLL + L E+P+ SG
Sbjct: 2 SIQLNGINCFYG---AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR-SG 57
Query: 653 TVNLYGSIAYVSQTSWIQSG-SIRDNI------------------LYGKPMDKARYDKAI 693
T+N+ G+ S+T ++ +R N+ L P R
Sbjct: 58 TLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC---RVLGLS 114
Query: 694 KACALDKDINNFDHGDLTEIGQR-GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
K AL + L R L+LSGGQ+QR+ +ARA+ + + LFD+P +A+D
Sbjct: 115 KDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGN 801
A + + A T ++VTH+VE + R++ +E G I + G+
Sbjct: 175 EITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
|
Length = 242 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 4e-12
Identities = 66/221 (29%), Positives = 102/221 (46%), Gaps = 48/221 (21%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-------EIPKISGTV--NLYGS- 659
++G++LD+ + I + G G GKS+LL + G EI I G V L +
Sbjct: 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI-WIGGRVVNELEPAD 75
Query: 660 --IAYVSQT-SWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
IA V Q + S+R+N+ YG + M KA ++ + A + E+
Sbjct: 76 RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAA-----------RILEL 124
Query: 714 GQ----RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE- 768
+ LSGGQ+QR+ + RA+ + ++LFD+P S +DA V LE
Sbjct: 125 EPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLR-------VQMRLEI 177
Query: 769 -------KKTVILVTH-QVEFLSEVDRILVLEGGQITQSGN 801
K T + VTH QVE ++ DR++V+ GG Q G
Sbjct: 178 QRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGT 218
|
Length = 356 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 4e-12
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 42/225 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAY----V 663
L+ +NL I Q A+ G G GKS+LL + L E KI+G + + G Y V
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 664 SQTSWIQSG-----------SIRDNILYG---------KPMDKARYDKAIKACALDKDIN 703
+ I+ G SI +N+ YG K +D+ +++++ AL ++
Sbjct: 79 ADLR-IKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEV-VERSLRGAALWDEVK 136
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ LSGGQ+QR+ +AR + + D+ L D+P SA+D AT E +
Sbjct: 137 -------DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDP--IATHKIEEL 187
Query: 764 MAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
M L+K T+++VTH ++ + DR G++ + + Q +
Sbjct: 188 MEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232
|
Length = 249 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 5e-12
Identities = 61/208 (29%), Positives = 108/208 (51%), Gaps = 23/208 (11%)
Query: 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---------KISGTVNLYGSIAYVSQTS 667
N+ +K + ++ G+G+ S ++ G+I + NL+ + VSQ
Sbjct: 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLF---SIVSQEP 1305
Query: 668 WIQSGSIRDNILYGKPMDKARYD--KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
+ + SI +NI +GK D R D +A K A+D+ I + + T +G G +LSGGQK
Sbjct: 1306 MLFNMSIYENIKFGKE-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQK 1364
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KTVILVTHQVEFLS 783
QRI +ARA+ + I L D+ S++D+++ L + ++ +K KT+I + H++ +
Sbjct: 1365 QRIAIARALLREPKILLLDEATSSLDSNS-EKLIEKTIVDIKDKADKTIITIAHRIASIK 1423
Query: 784 EVDRILVLEG----GQITQS-GNYQELL 806
D+I+V G Q+ G ++ELL
Sbjct: 1424 RSDKIVVFNNPDRTGSFVQAHGTHEELL 1451
|
Length = 1466 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-12
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQ 670
L +N +++ +++ + G GAGK+SLL A+ G P SG +++ ++ ++ Q ++
Sbjct: 409 LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLP 468
Query: 671 SGSIRDNILYGKPMDKARYD-----KAIKACALDKDINNFD-HGDLTEIGQRGLNLSGGQ 724
G++R+ + Y P + + L D + LSGG+
Sbjct: 469 QGTLREALCY--PNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRV------LSGGE 520
Query: 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784
+QR+ AR + + D+ SA+D T L+ + + L TVI V H+ +
Sbjct: 521 QQRLAFARLLLHKPKWVFLDEATSALDEETEDRLY-QLLKEELPDATVISVGHRPTLWNF 579
Query: 785 VDRILVLEG 793
R L L
Sbjct: 580 HSRQLELLD 588
|
Length = 604 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 58/243 (23%), Positives = 111/243 (45%), Gaps = 21/243 (8%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++ L ++ LK ++ G ++G TGSGK+ L+ + ++P G IL
Sbjct: 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKIL 57
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNLD---PLGLYSDDEIWKALEKCQL 1331
++G DI L + +S +PQ LF +V N+ EI + + +
Sbjct: 58 LNGKDI--TNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAE 115
Query: 1332 KTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAIL 1391
I L N+ + E S G++Q + R L+ +IL+LDE +++D T L
Sbjct: 116 MLGIDHLLNR-------KPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL 168
Query: 1392 QRIIR--QEFSNCTVITVAHRVPTV-IDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 1448
+ ++ ++ TV+ V H +D V ++ GKL++ +P ++ + ++ V
Sbjct: 169 REELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPK--NEFV 226
Query: 1449 AEY 1451
AE+
Sbjct: 227 AEF 229
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 6e-12
Identities = 64/246 (26%), Positives = 110/246 (44%), Gaps = 33/246 (13%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+R + R+ + L ++ G V ++G +GSGKTTL+ + L P G+IL
Sbjct: 3 IEVRNVSKRF-GDFV-ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLGL--------YSDDEIWKA- 1325
G D + +++ V + Q LFR +V N+ GL + EI
Sbjct: 61 FGGEDATDVPVQERNVGF--VFQHYALFRHMTVFDNV-AFGLRVKPRSERPPEAEIRAKV 117
Query: 1326 ---LEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
L+ QL P +L S GQRQ L R L ++L+LDE +
Sbjct: 118 HELLKLVQLDWLADRYPAQL-----------SGGQRQRVALARALAVEPKVLLLDEPFGA 166
Query: 1383 IDSATDAILQRIIRQ--EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
+D+ L+R +R+ + + T + V H ++ +D V+V++ G++ + P ++ +
Sbjct: 167 LDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226
Query: 1440 T-NSSF 1444
S F
Sbjct: 227 HPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 6e-12
Identities = 58/244 (23%), Positives = 107/244 (43%), Gaps = 41/244 (16%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ L + Y +L ++ + G ++G G GK+TL+ RL+ P G++
Sbjct: 3 LRTENLTVGY--GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVF 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLG----------LYSDDE--I 1322
+ I + + L +L+++PQ G +VR L G L ++D +
Sbjct: 61 LGDKPISMLSSRQLARRLALLPQHHLTPEGITVR-ELVAYGRSPWLSLWGRLSAEDNARV 119
Query: 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
+A+E +T I+ L ++ + + S GQRQ L VL + +++LDE
Sbjct: 120 NQAME----QTRINHLADRRLTDL-------SGGQRQRAFLAMVLAQDTPVVLLDEPTTY 168
Query: 1383 IDSATDAILQRIIRQEFSNC-TVITVAHRVPTVID-------SDMVMVLSYGKLLEYDEP 1434
+D L R++R+ + TV+TV H D D ++VL+ G ++ P
Sbjct: 169 LDINHQVELMRLMRELNTQGKTVVTVLH------DLNQASRYCDHLVVLANGHVMAQGTP 222
Query: 1435 SKLM 1438
++M
Sbjct: 223 EEVM 226
|
Length = 255 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 8e-12
Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 37/224 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTV-----NLYGS--- 659
L +N+ I A+ G G GKS+ L + L E KI G V N+Y +
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 660 -------IAYVSQTSWIQSGSIRDNILYGKPM----DKARYD----KAIKACALDKDINN 704
I V QT SI DNI YG + DK + D +++K AL ++ +
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD 142
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
++ L+LSGGQ+QR+ +AR + + ++ L D+P SA+D + + E ++
Sbjct: 143 -------KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKI-EELII 194
Query: 765 AALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
E T+I+VTH ++ + DR G I + + EL
Sbjct: 195 NLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFF 238
|
Length = 254 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 8e-12
Identities = 63/241 (26%), Positives = 107/241 (44%), Gaps = 53/241 (21%)
Query: 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG 645
I + ++V EG EL+I L+GV L +K + +A+ G G+GKS+LL + G
Sbjct: 7 IEVHHLSKTVGQGEG------ELSI--LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG 58
Query: 646 EIPKISGTVNLYG-----------------SIAYVSQT-SWIQSGSIRDNI-----LYGK 682
SG V L G + +V Q+ I + + +N+ L G+
Sbjct: 59 LDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE 118
Query: 683 ----PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738
A+ ++A L K + ++ LSGG++QR+ LARA
Sbjct: 119 SSADSRAGAK--ALLEAVGLGKRLTHYPA-----------QLSGGEQQRVALARAFAGRP 165
Query: 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSEVDRILVLEGGQ 795
D+ D+P +D T + + ++ AL ++ T++LVTH + + DR L L G+
Sbjct: 166 DVLFADEPTGNLDRATGDKIAD--LLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGR 223
Query: 796 I 796
+
Sbjct: 224 L 224
|
Length = 228 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 8e-12
Identities = 54/240 (22%), Positives = 114/240 (47%), Gaps = 20/240 (8%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--VEPAG- 1271
+++L QL + + N +K ++ F E + ++G +G GK+T++ ++ R+ + P+
Sbjct: 4 KVKLEQLNVHFGKNH--AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 1272 --GSILIDGVDICSMGLK--DLRVKLSIIPQEPTLFRG-SVRTNL----DPLGLYSDDEI 1322
G IL+D DI G+ +R ++ ++ Q+P F S+ N+ G + E
Sbjct: 62 VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEA 121
Query: 1323 WKALEKCQLKTTI-SSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381
+ +E + + + ++L S+ + S GQ+Q C+ R + + ++++DE +
Sbjct: 122 DEIVESSLKRVALWDEVKDRLKSNAME----LSGGQQQRLCIARTIAVKPEVILMDEPAS 177
Query: 1382 SIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440
++D + ++ +I + T+I V H + SD G L+E E K+ T
Sbjct: 178 ALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTT 237
|
Length = 252 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 8e-12
Identities = 109/480 (22%), Positives = 177/480 (36%), Gaps = 61/480 (12%)
Query: 974 FTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL-----LAIIG 1028
F I P+ + R+L L+SD+ + F V A L LA +
Sbjct: 87 FIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLS 146
Query: 1029 IMTFVTWQVLVVAIFAMVAVRFVQRY-YIATARELIRINGTTKAPVMNYTAETSQGV--V 1085
F+ V +V V + Y ++A ARE T+ + N +G +
Sbjct: 147 PKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARE-------TEDKLQNDYQTILEGRKEL 199
Query: 1086 TIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA--ALFLVLI 1143
T+ +R + L DA + H L N+ L +F + +
Sbjct: 200 TLNR----ERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLAL 255
Query: 1144 PRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYI---ISVERIKQFMHIPPEPPAI 1200
G+ + ++ + L + L L + ++ +I + P A
Sbjct: 256 SLGWAS---TNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPY--KAD 310
Query: 1201 VEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLI 1260
+ W +ELR ++ Y+ NA + I T G V ++G GSGK+TL
Sbjct: 311 FPRPQAFPDWK---TLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLA 366
Query: 1261 SALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDD 1320
L L +P G IL+DG + + L+D R S + + LF L P G S
Sbjct: 367 MLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLF----DQLLGPEGKASPQ 422
Query: 1321 EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEAN 1380
I K L++ +L S + + S GQ++ L LL+ ILVLDE
Sbjct: 423 LIEKWLQRLELAHKTSLNDGRFSNL------KLSTGQKKRLALLLALLEERDILVLDEWA 476
Query: 1381 ASIDSATDAILQRIIRQEFSNC----------TVITVAHRVPTVIDSDMVMVLSYGKLLE 1430
A D A R+EF T+ ++H I +D ++ + G+L E
Sbjct: 477 ADQDPA--------FRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 9e-12
Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 34/196 (17%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD--- 1288
+L + T +G ++G +GSGK+TL++ + L + G + ++G + + K
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 1289 -LRVKLSIIPQEPTLFRG-SVRTNLDPLGL-YS-------DDEIWKALEKC----QLKTT 1334
R KL + Q L +V NLD LGL Y ++ +ALEK +LK
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLD-LGLKYKKLSKKEKREKKKEALEKVGLNLKLKQK 131
Query: 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRI 1394
I L S G++Q L R +LK +++ DE S+D + +
Sbjct: 132 IYEL---------------SGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 1395 IRQEFS-NCTVITVAH 1409
+ + T+I V H
Sbjct: 177 LLELNDEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 9e-12
Identities = 99/537 (18%), Positives = 178/537 (33%), Gaps = 92/537 (17%)
Query: 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSS 1000
+ G+ + +F F A+ G+ I AP+ D ++ L+
Sbjct: 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTH 118
Query: 1001 DLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMV-------------- 1046
D+ ++ F +A + I + +++ + + I A++
Sbjct: 119 DIDQIN-AFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGF 177
Query: 1047 ----AVR----FVQRYYIATAREL--IRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096
A R + A A ++I+G + + + I ++++
Sbjct: 178 KFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRR--LSFAHGAIQESANNIADLHIIEI- 234
Query: 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLS 1156
+ L F L LF AA+F + A L L
Sbjct: 235 --LIFIAAENFGQLLFFL-------------LIGCALFAAAMFASIDAAAISAFVLALL- 278
Query: 1157 LSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI--PPEPPAIVEDKR------PPS 1208
+ G L LA I+ +R+ F PEP + D
Sbjct: 279 -----YIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDK 333
Query: 1209 SWPFKGRIELRQLKIRYRP---NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFR 1265
S IEL+ + + + + L I ++G V +VG G GK+TL
Sbjct: 334 SV---DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG 390
Query: 1266 LVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKA 1325
L P G IL+DG + + D R S I + LF + D+ +
Sbjct: 391 LYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIG---------PDEGEHAS 441
Query: 1326 LEKCQLKTTISSLPNKLDSSVSDEGENWSA------GQRQLFCLGRVLLKRNRILVLDEA 1379
L+ Q + L ++ V E +S GQ++ L L+ IL+ DE
Sbjct: 442 LDNAQ--QYLQRL--EIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEW 497
Query: 1380 NASIDSATDAILQRIIRQEF------SNCTVITVAHRVPTVIDSDMVMVLSYGKLLE 1430
A D A +R +E T+I ++H +D ++ L+ G +++
Sbjct: 498 AADQDPA----FKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 1e-11
Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 38/233 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
+R V+ ++ + + + G VGAG++ L A+ G P SG + L G
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 660 -IAYVS----QTSWIQSGSIRDNILYGKPMDKAR---YDKAIKACALDKDINNFD---HG 708
IAYV + SI +NI +R D+ + ++ I
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL- 767
IG LSGG +Q++ LAR + D + + D+P +D A ++ ++ L
Sbjct: 395 PEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR--LIRELA 448
Query: 768 -EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
E K +++++ ++ L + DRILV+ G+I EL E ++ A
Sbjct: 449 AEGKAILMISSELPELLGLSDRILVMREGRIV-----GELDREEATEEAIMAA 496
|
Length = 500 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 1e-11
Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 15/217 (6%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MG 1285
L GI+ F E ++G +G GK+T + L R+ + G I +G +I M
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 1286 LKDLRVKLSIIPQEPTLFRGSVRTN----LDPLGLYSDDEIWKALEKCQLKTTISSLPNK 1341
L +LR ++ ++ Q+PT F SV N L G+ + I + +E+ LK +++ +
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEE-SLKQ--AAIWKE 136
Query: 1342 LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSN 1401
++ + +S GQ+Q C+ R L R ++++LDE +++D + + ++ + +
Sbjct: 137 TKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQ 196
Query: 1402 CTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
T I V H + SD L G L+E ++
Sbjct: 197 YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 40/226 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-----EIPKISGTVNLYGSIAYVSQTS 667
L+GV++DI A+ G G GKS+ L + + +I G+V L G Y +
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 668 WI----------QS-----GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+ QS SIR+NI YG P + + A L +D + +L E
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYG-PRKHGDINTGLLARLLGRDDKD-AEDELVE 178
Query: 713 ---------------IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
+ L LSGGQ+QR+ +AR + D ++ L D+P SA+D A +
Sbjct: 179 RSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP-IATS 237
Query: 758 LFNECVMAALEKKTVILVTHQVEFLSEV-DRILV-LEGGQITQSGN 801
+ + E+ TV++VTH ++ + + D+ V L GG++ + +
Sbjct: 238 KIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDD 283
|
Length = 305 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 1e-11
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 8/208 (3%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292
+ G+ EG G +G G+GKTT I L L+ P G+ + G D+ K +R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK-VRRS 67
Query: 1293 LSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGE 1351
+ I+PQ ++ + R NL+ +G +A E+ + + L D V
Sbjct: 68 IGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPV----G 123
Query: 1352 NWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHR 1410
+S G R+ + L+ + +L LDE +D T + IR T++ H
Sbjct: 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY 183
Query: 1411 VPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
+ D + ++ +G+++ P +L
Sbjct: 184 MEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-11
Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 45/215 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
V+L +K + A+ G GAGKS+L+ + G SG + + G
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79
Query: 660 -IAYVSQT-SWIQSGSIRDNILYGKPMDK-ARYDKAIKACALDKDINNFDHGDLTEIGQR 716
I V Q + + ++ +NI+ G K D+ + E+ +R
Sbjct: 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRR------------QARARIKELSER 127
Query: 717 -GLN---------LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
GL LS G++QR+++ +A+Y A + + D+P + + A LF A
Sbjct: 128 YGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLA 187
Query: 767 LEKKTVILVTHQVEFLSEV----DRILVLEGGQIT 797
E KT+I +TH+ L EV DR+ VL G++
Sbjct: 188 AEGKTIIFITHK---LKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 66/247 (26%), Positives = 112/247 (45%), Gaps = 37/247 (14%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE--P- 1269
+I++R L Y LK I ++ +G +G GK+TL+ R+ E P
Sbjct: 11 PSKIQVRNLNFYYGKFH--ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPE 68
Query: 1270 --AGGSILIDGVDICS--MGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG--LYS----- 1318
A G IL+DG +I + + LR K+ ++ Q+PT F S+ N+ G L+
Sbjct: 69 QRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNI-AFGVRLFEKLSRA 127
Query: 1319 --DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVL 1376
D+ + AL K L + +KL S G + S GQ+Q C+ R + R +L+L
Sbjct: 128 EMDERVEWALTKAALWNEVK---DKLHQS----GYSLSGGQQQRLCIARGIAIRPEVLLL 180
Query: 1377 DEANASIDSATDAILQRIIRQEFSNCTVITVAH------RVPTVIDSDMVMVLSYGKLLE 1430
DE +++D + ++ +I + + TV+ V H R SD + G+L+E
Sbjct: 181 DEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARC-----SDYTAFMYLGELIE 235
Query: 1431 YDEPSKL 1437
+ +
Sbjct: 236 FGNTDTI 242
|
Length = 260 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 52/252 (20%)
Query: 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI 647
LQ + + QEG+ D L V+ I + +A+ GS G+GKS+LL+ + G
Sbjct: 6 LQCDNLCKRYQEGSVQTD------VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59
Query: 648 PKISGTVNLYGSIAYVSQTSWIQSGSIRDN------------------------ILYGKP 683
SG V G +S+ S +R+ +L GK
Sbjct: 60 TPTSGDVIFNGQ--PMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKK 117
Query: 684 MDKARYDKA---IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740
+A + A L+ N+ R LSGG++QR+ +ARA+ N+ +
Sbjct: 118 KPAEINSRALEMLAAVGLEHRANH-----------RPSELSGGERQRVAIARALVNNPRL 166
Query: 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL-VTHQVEFLSEVDRILVLEGGQITQS 799
L D+P +DA A ++F + T L VTH ++ + R L + G++T
Sbjct: 167 VLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLT-- 224
Query: 800 GNYQELLLAGTA 811
EL L G
Sbjct: 225 ---AELSLMGAE 233
|
Length = 233 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 2e-11
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 17/220 (7%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL------GEIPKISG----TVNLY---GS 659
L+ ++ ++ Q++ + G G+GKS+LL A+L GEI +I G +V L +
Sbjct: 1235 LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEI-QIDGVSWNSVTLQTWRKA 1293
Query: 660 IAYVSQTSWIQSGSIRDNI-LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
+ Q +I SG+ R N+ Y + D+ + K + L I F + G
Sbjct: 1294 FGVIPQKVFIFSGTFRKNLDPYEQWSDEEIW-KVAEEVGLKSVIEQFPDKLDFVLVDGGY 1352
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LS G KQ + LAR++ + A I L D+P + +D T + + + + TVIL H+
Sbjct: 1353 VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII-RKTLKQSFSNCTVILSEHR 1411
Query: 779 VEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
VE L E + LV+EG + Q + Q+LL + F+Q ++A
Sbjct: 1412 VEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSA 1451
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-11
Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 20/209 (9%)
Query: 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV----KLSIIP 1297
+G ++G +GSGK+T + L RL+EP G I IDG +I +LR K+ ++
Sbjct: 18 KGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVF 77
Query: 1298 QEPTLF-RGSVRTN----LDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGEN 1352
Q+ LF ++ N + LG + KALE +L L DE
Sbjct: 78 QQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKL----VGLEEYEH-RYPDE--- 129
Query: 1353 WSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIR--QEFSNCTVITVAHR 1410
S G +Q L R L IL++DEA +++D +Q ++ Q T++ + H
Sbjct: 130 LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD 189
Query: 1411 VPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438
+ I D ++++ G++++ P +++
Sbjct: 190 LDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 30/216 (13%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------- 659
L L G++L+I + V GS GAGKS+LL AI G++ SG + + G
Sbjct: 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75
Query: 660 ------IAYVSQTSWIQSG---SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
+A V Q + +I +N+ + ++R K + AL++ + L
Sbjct: 76 AKRANLLARVFQDPLAGTAPELTIEENLA----LAESRGKKRGLSSALNERRRSSFRERL 131
Query: 711 TEIGQRGLN--------LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+G N LSGGQ+Q + L A + I L D+ +A+D TA +
Sbjct: 132 ARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELT 191
Query: 763 VMAALEKK-TVILVTHQVE-FLSEVDRILVLEGGQI 796
E K T ++VTH +E L +R+++L G+I
Sbjct: 192 AKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 61/222 (27%), Positives = 96/222 (43%), Gaps = 20/222 (9%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ L RY L ++ T G V ++G G+GK+TL S L RL G I
Sbjct: 2 LEVAGLSFRYGARR--ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQIS 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTL-FRGSVRTNL----DPLGLYSDDEIWKALEKCQ 1330
+ G D+ L +L ++ Q+PTL SVR NL GL +A +
Sbjct: 60 VAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRA----EARARIA 114
Query: 1331 LKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAI 1390
L + D V + + G R+ + R LL R +L+LDE +D A+ A
Sbjct: 115 ELLARLGLAERADDKVRE----LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAA 170
Query: 1391 LQRIIR---QEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLL 1429
+ +R ++ V+ H V + D ++VL G++L
Sbjct: 171 ITAHVRALARDQGLS-VLWATHLVDEIEADDRLVVLHRGRVL 211
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 38/198 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI------------LGEIPKISGTVNLYG-- 658
L+ +N+ + Q A+ G G GKS+ L GEI VN+
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 659 --------SIAYVSQTSWIQSGSIRDNILYG--------KPMDKARYDKAIKACALDKDI 702
I+ V Q SI +N+ YG + + + R + A++ AL ++
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ +G NLSGGQ+QR+ +ARA+ D +I LFD+P SA+D A++ E
Sbjct: 152 KD-------RLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI-EEL 203
Query: 763 VMAALEKKTVILVTHQVE 780
+ K T+++VTH ++
Sbjct: 204 ISDLKNKVTILIVTHNMQ 221
|
Length = 265 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 16/221 (7%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--VEPAG---GSILIDGVDICSMGLK 1287
+K + GT ++G +G GKTT + A+ R+ + P G IL+DG DI +
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 1288 D--LRVKLSIIPQEPTLFR-----GSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPN 1340
+R ++ ++ Q+P F +V L G+ D + + E+ L+ ++L +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAER-SLRG--AALWD 136
Query: 1341 KLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS 1400
++ + S GQ+Q C+ R L IL++DE +++D A+ A ++ ++
Sbjct: 137 EVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK 196
Query: 1401 NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440
T+I V H + SD G L+E+ +L
Sbjct: 197 VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN 237
|
Length = 252 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 2e-11
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVI 773
G+ ++LSGGQ+QR+ +ARA+ + ++ LFD+P SA+D + A E KT++
Sbjct: 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 206
Query: 774 LVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+VTH++ F V ++ L G+I + G ++L
Sbjct: 207 VVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
|
Length = 257 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (161), Expect = 3e-11
Identities = 66/236 (27%), Positives = 108/236 (45%), Gaps = 28/236 (11%)
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI------------ 643
+I+ NF W L +NLDIK + A G G GKS+ L +
Sbjct: 82 EIRNFNF-WYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 644 LGEI---------PKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIK 694
GEI KIS ++ L I V Q SI DN+ YG P + D+ I
Sbjct: 141 EGEIYFLGTNTRSKKIS-SLELRTRIGMVFQKPTPFEMSIFDNVAYG-PRNNGINDRKIL 198
Query: 695 ACALDKDINNFDHGDLT--EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
++K + + D ++ + G LSGGQ+QR+ +ARA+ + ++ L D+P SA+D
Sbjct: 199 EKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDP 258
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
A + E ++ +K ++I+VTH + + D + G I ++G + + +
Sbjct: 259 IATAKI-EELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313
|
Length = 329 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 3e-11
Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 35/236 (14%)
Query: 1216 IELRQLKIRYRPNAP---LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I ++++ RY+ P L + + G+ V ++G TGSGK+TL+ L L++P G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 1273 SILIDGVDICSMG-----LKDLRVKLSIIPQ--EPTLFRGSVRTNL--DPL--GLYSDDE 1321
++ I G + + G LK LR K+ I+ Q E LF +V ++ P+ G+ +D
Sbjct: 63 TVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDA 121
Query: 1322 IWKALEKCQLKTTISSLPNK-LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEAN 1380
KA E +L LP + L S + S GQ + + VL +LVLDE
Sbjct: 122 KQKAREMIEL----VGLPEELLARSPFE----LSGGQMRRVAIAGVLAMEPEVLVLDEPT 173
Query: 1381 ASIDSATDAILQRIIRQEFS------NCTVITVAHRVPTVID-SDMVMVLSYGKLL 1429
A +D ++ + + F T + V H + +D ++V+ G +
Sbjct: 174 AGLDPKG----RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF 225
|
Length = 290 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 5/90 (5%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTH 777
LSGGQ+QR+ +ARA+ + ++ LFD+P SA+D + VM L E +T+++VTH
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK--VMQDLAEEGRTMVVVTH 210
Query: 778 QVEFLSEV-DRILVLEGGQITQSGNYQELL 806
++ F +V ++ L G+I + G +++
Sbjct: 211 EMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240
|
Length = 256 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 3e-11
Identities = 68/257 (26%), Positives = 115/257 (44%), Gaps = 45/257 (17%)
Query: 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGEIPK---I 650
KI GNF +A+ R ++ I+ + G G GKS++L ++ + ++ K
Sbjct: 15 KIFYGNF-----MAV---RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRF 66
Query: 651 SGTVNLYGS---------------IAYVSQTSWIQSGSIRDNILYGKPMDKARYD----- 690
G V+ G I V Q S SI DN+ +G +++ + D
Sbjct: 67 EGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRV 126
Query: 691 -KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
A++ AL ++ + ++ GL+LSGGQ+QR+ +ARA+ + ++ L D+P SA
Sbjct: 127 KHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSA 179
Query: 750 VDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808
+D AT E +M L+K T+ LVTH ++ V I+Q L+
Sbjct: 180 LDP--IATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237
Query: 809 GTAFEQLVNAHRDAITG 825
G Q+ R+ +T
Sbjct: 238 G-PTAQIFQNPREQLTS 253
|
Length = 261 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-11
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 21/221 (9%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
++ L Y VL I+ +G G +G G+GKTT + + L++P G I
Sbjct: 1 LKTNDLTKTYGKK--RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLGLY---SDDEIWKALEKCQL 1331
DG ++ LR ++I + P + + R NL L I + L+ L
Sbjct: 59 FDGKSY-QKNIEALRRIGALI-EAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGL 116
Query: 1332 KTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAIL 1391
K S + + +S G +Q + LL +L+LDE +D L
Sbjct: 117 KD-----------SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL 165
Query: 1392 QRIIRQEF-SNCTVITVAHRVPTV-IDSDMVMVLSYGKLLE 1430
+ +I TV+ +H + + +D + +++ GKL+E
Sbjct: 166 RELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 56/222 (25%), Positives = 104/222 (46%), Gaps = 25/222 (11%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL---VEPA--GGSILIDGVDICS--MG 1285
+KGI F + ++G +GSGK+T + +L R+ ++ A G IL G+DI +
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 1286 LKDLRVKLSIIPQEPTLFRGSVRTN----LDPLGLYSDDEIWKALEKCQLKTTISSLPNK 1341
+ ++R + ++ Q P F S+ N L+ G+ + + +E LK ++L ++
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVET-SLKQ--AALWDQ 152
Query: 1342 LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSN 1401
+ + S GQ+Q C+ R + + IL++DE +++D + L+ + + N
Sbjct: 153 VKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN 212
Query: 1402 CTVITVAH------RVPTVIDSDMVMVLSYGKLLEYDEPSKL 1437
T+I V H R SD G L+EYD+ +
Sbjct: 213 YTIIIVTHNMQQAARA-----SDYTAFFYLGDLIEYDKTRNI 249
|
Length = 267 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-11
Identities = 56/209 (26%), Positives = 92/209 (44%), Gaps = 21/209 (10%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG---GSILIDGVDICSMGLKDL 1289
L GI G VG+ G G+GK+TL+ L V P G G I G + + ++D
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGTWDGEIYWSGSPLKASNIRDT 75
Query: 1290 RVK-LSIIPQEPTLFRG-SVRTNL-------DPLGLYSDDEIWKALEKCQLKTTISSLPN 1340
+ II QE TL SV N+ P G + + ++ + + + +
Sbjct: 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV 135
Query: 1341 KLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ-EF 1399
V D G GQ+QL + + L K+ R+L+LDE ++S+ IL IIR +
Sbjct: 136 TR--PVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA 189
Query: 1400 SNCTVITVAHRVPTVID-SDMVMVLSYGK 1427
+ ++H++ V D + V+ G+
Sbjct: 190 HGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 33/220 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYV 663
L GV+LD++ + +A+ G GAGKS+LL A+ GE+ SG V L G +A
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76
Query: 664 -----SQTSWIQSGSIRDNILYGK-PMDKARY---DKAIKACALDKDINNFDHGDLTEIG 714
+S ++++ + G+ P R D+ I A AL DL+ +
Sbjct: 77 RAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAA-------TDLSGLA 129
Query: 715 QRGLN-LSGGQKQRIQLAR------AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
R LSGG++QR+QLAR D+P SA+D A
Sbjct: 130 GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR 189
Query: 768 EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806
E V+ V H + ++ DRI++L G++ SG+ Q++L
Sbjct: 190 EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 4e-11
Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 39/183 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQTSWIQ 670
L+ ++ +IK ++ + G G GKSSL A+ G P SG + + + ++ Q ++
Sbjct: 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP 76
Query: 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730
G++R+ ++Y P D LSGG++QR+
Sbjct: 77 LGTLREQLIY--PWDDV--------------------------------LSGGEQQRLAF 102
Query: 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILV 790
AR + + D+ SA+D + L+ + TVI V H+ DR+L
Sbjct: 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQ---LLKELGITVISVGHRPSLWKFHDRVLD 159
Query: 791 LEG 793
L+G
Sbjct: 160 LDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 4e-11
Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 48/195 (24%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IEL L + P+ ++LK ++ G R+ + G +G+GK++L AL L G I
Sbjct: 1 IELENLSL-ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI- 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTI 1335
+ L +PQ P L G++R L +Y W
Sbjct: 59 ----GMPEGE------DLLFLPQRPYLPLGTLREQL----IYP----W------------ 88
Query: 1336 SSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRII 1395
+ S G++Q R+LL + + + LDEA +++D ++ L +++
Sbjct: 89 --------------DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL 134
Query: 1396 RQEFSNCTVITVAHR 1410
++ TVI+V HR
Sbjct: 135 KELG--ITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 4e-11
Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 34/248 (13%)
Query: 1216 IELRQLKIRYRPNAPLVLK---GITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I++R + RY V+K ++ EG G+VG +G+GKTTL + ++EP G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 1273 SILI----DGVDICSMGLKDL-RVK--LSIIPQEPTLF-RGSVRTNL-DPLGLYSDDEIW 1323
+ + + VD+ G R K + I+ QE L+ +V NL + +GL DE+
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA 399
Query: 1324 KALEKCQLKTT------ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLD 1377
+ LK + +K +S+ G+R L +VL+K RI++LD
Sbjct: 400 RMKAVITLKMVGFDEEKAEEILDKYPDELSE-------GERHRVALAQVLIKEPRIVILD 452
Query: 1378 EANASID-----SATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEY 1431
E ++D T +IL+ R+E T I V+H + V+D D ++ GK+++
Sbjct: 453 EPTGTMDPITKVDVTHSILKA--REEM-EQTFIIVSHDMDFVLDVCDRAALMRDGKIVKI 509
Query: 1432 DEPSKLME 1439
+P +++E
Sbjct: 510 GDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 4e-11
Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 10/218 (4%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG-----SILIDGVDICSM-G 1285
VL ++ F ++G TGSGKTT + L R+ + G +L+ G I +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK--CQLKTTISSLPNKLD 1343
+ + R ++ ++ Q P F S+ N+ G+ + + + + Q + T L + +
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNV-LAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK 154
Query: 1344 SSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCT 1403
+SD S GQ+QL CL R L +L+LDE +++D T ++ IR T
Sbjct: 155 DRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLT 214
Query: 1404 VITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440
VI V H + SD + G+L+E +L +
Sbjct: 215 VIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 41/205 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS----- 667
L ++L I Q +AV G G GKS+LL +L + S L G+ A +++
Sbjct: 28 LNQLDLHIPAGQFVAVVGRSGCGKSTLL-RLLAGLETPSAGELLAGT-APLAEAREDTRL 85
Query: 668 ---------WIQSGSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
W + DN+ L G+ D A +A+ A L N +
Sbjct: 86 MFQDARLLPW---KKVIDNVGLGLKGQWRDAAL--QALAAVGLADRANEWPAA------- 133
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TV 772
LSGGQKQR+ LARA+ + + L D+P A+DA T + + ++ +L ++ TV
Sbjct: 134 ----LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM--QDLIESLWQQHGFTV 187
Query: 773 ILVTHQV-EFLSEVDRILVLEGGQI 796
+LVTH V E ++ DR+L++E G+I
Sbjct: 188 LLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 5e-11
Identities = 44/201 (21%), Positives = 88/201 (43%), Gaps = 7/201 (3%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL--- 1289
L I G +VG+ G GK++L+ A+ ++ G + + +
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 1290 -RVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSD 1348
R ++ Q+P L +V N+ ++ + C L+ I LP + + +
Sbjct: 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGE 136
Query: 1349 EGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID-SATDAILQRIIRQEFSN--CTVI 1405
G N S GQRQ C+ R L + I+ LD+ +++D +D ++Q I + + T++
Sbjct: 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLV 196
Query: 1406 TVAHRVPTVIDSDMVMVLSYG 1426
V H++ + +D ++ + G
Sbjct: 197 LVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 5e-11
Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 38/195 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
++GV+L I A+ G G GKS+LL L E ++ G V L+G Y
Sbjct: 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVD 79
Query: 668 WIQSG----------------SIRDNILYGKPMDK---------ARYDKAIKACALDKDI 702
I+ +I DN+ G ++ R + A+K AL ++
Sbjct: 80 PIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV 139
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ + NLSGGQ+QR+ +ARA+ I L D+P + +D A + E
Sbjct: 140 KD-------RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKI-EEL 191
Query: 763 VMAALEKKTVILVTH 777
+ ++ T++LVTH
Sbjct: 192 LFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 5e-11
Identities = 53/216 (24%), Positives = 97/216 (44%), Gaps = 30/216 (13%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658
+ GVN ++ + G GAGK++ + + + SGT + G
Sbjct: 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVR 65
Query: 659 -SIAYVSQTSWIQSG-SIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
SI V Q + + + R+N+ LYG P D+A +A L + +L
Sbjct: 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEE----RAEELLELF------ELG 115
Query: 712 EIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
E R + SGG ++R+ +A ++ + D+ D+P + +D T +++ E
Sbjct: 116 EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175
Query: 771 TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
T++L TH +E ++ DRI +++ G+I G +EL
Sbjct: 176 TILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 5e-11
Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 15/219 (6%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICSMGLK 1287
L IT + + ++G +G GK+TL+ R+ + G IL +G +I G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 1288 --DLRVKLSIIPQEPTLFRGSVRTNL--DPL--GLYSDDEIWKALEKCQLKTTISSLPNK 1341
LR K+ ++ Q P F S+ N+ P G + + +EK LK ++L ++
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKS-LKG--AALWDE 138
Query: 1342 LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSN 1401
+ + D + S GQ+Q C+ R L ++++DE +++D A ++ +I
Sbjct: 139 VKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKE 198
Query: 1402 CTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
TVI V H + SD + GKL+E+D+ +++ E
Sbjct: 199 YTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237
|
Length = 253 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 5e-11
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 32/218 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
++ +L I+ + + G G+GKS+++ + I G V + G
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 659 ---SIAYVSQT-SWIQSGSIRDNILYGKPMD----KARYDKAIKACALDKDINNFDHGDL 710
IA V Q+ + + ++ DN +G + + R +KA+ A + N+ H
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALR-QVGLENYAHSYP 162
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEK 769
E LSGG +QR+ LARA+ + DI L D+ FSA+D + +E V + A +
Sbjct: 163 DE-------LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215
Query: 770 KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+T++ ++H ++ + DRI +++ G++ Q G E+L
Sbjct: 216 RTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 5e-11
Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 40/231 (17%)
Query: 1213 KGRIELRQLK-IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG 1271
+ L QL+ + Y +L I+ + G + G +G GK+TL+ + L+ P
Sbjct: 2 QENSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS 61
Query: 1272 GSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL-----------DPLGLYSDD 1320
G++L +G DI ++ + R ++S Q PTLF +V NL DP D
Sbjct: 62 GTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDD- 120
Query: 1321 EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN-----RILV 1375
LE+ L TI L ++++ S G++Q R+ L RN ++L+
Sbjct: 121 -----LERFALPDTI------LTKNIAE----LSGGEKQ-----RISLIRNLQFMPKVLL 160
Query: 1376 LDEANASIDSATDAILQRIIRQ--EFSNCTVITVAHRVPTVIDSDMVMVLS 1424
LDE +++D + + II + N V+ V H + +D V+ L
Sbjct: 161 LDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ 211
|
Length = 225 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 7e-11
Identities = 58/234 (24%), Positives = 107/234 (45%), Gaps = 36/234 (15%)
Query: 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSL---LYAIL--------- 644
I+ N S+ P L +NL IK + I + G G+GKS+L L +L
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
Query: 645 -----GEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGK------PMD-KARYDKA 692
G+ K+ G L G + +T ++ ++ +++ +G P++ + R D+A
Sbjct: 62 SGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR-TVEEDLAFGPENLCLPPIEIRKRVDRA 120
Query: 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
+ L+K + H + LSGGQ Q + LA + + + +FD+ S +D
Sbjct: 121 LAEIGLEK----YRH-------RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDP 169
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ + + KT++ +TH +E L + DRI+V++ G+I G + +L
Sbjct: 170 DSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223
|
Length = 274 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 7e-11
Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 55/251 (21%)
Query: 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
D +KI+ NF + L+ +N+D Q A+ G G GKS+LL A+ +S
Sbjct: 2 DPKIKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVS 58
Query: 652 GT--------------------VNLYGSIAYVSQTSWIQSGSIRDNILYGKPM----DKA 687
G VNL + V Q SI DN+ +G M ++
Sbjct: 59 GARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQS 118
Query: 688 RYD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743
R D K+++ AL ++ + H + GL LSGGQ+QR+ +AR + + ++ L
Sbjct: 119 RLDEVVEKSLRQAALWDEVKDNLH-------KSGLALSGGQQQRLCIARVLAIEPEVILM 171
Query: 744 DDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802
D+P SA+D +T+ E +M L++ T+ +VTH ++ Q ++ ++
Sbjct: 172 DEPCSALDP--VSTMRIEELMQELKQNYTIAIVTHNMQ--------------QAARASDW 215
Query: 803 QELLLAGTAFE 813
LL G E
Sbjct: 216 TGFLLTGDLVE 226
|
Length = 251 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 7e-11
Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 30/216 (13%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659
+ G++ + + + G GAGKS++ ILG +G + + G
Sbjct: 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARA 114
Query: 660 -IAYVSQTSWI-QSGSIRDNIL-YGKPMD-KARYDKAIKACALDKDINNFDHGDLTEIGQ 715
I V Q + ++R+N+L +G+ R +A+ L+ F + ++
Sbjct: 115 RIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLE-----FARLE-SKADA 168
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVIL 774
R +LSGG K+R+ LARA+ ND + + D+P + +D H A L E + + L + KT++L
Sbjct: 169 RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILL 227
Query: 775 VTHQVEFLSEV----DRILVLEGGQITQSGNYQELL 806
TH F+ E DR+ VLE G+ G L+
Sbjct: 228 TTH---FMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 7e-11
Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 12/214 (5%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292
+K ++ T EG + ++G GSGK+TL L ++EP G ILI+ + G R K
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL-HFGDYSFRSK 87
Query: 1293 L-SIIPQEP-TLF--RGSVRTNLD-PLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVS 1347
+I Q+P T R + LD PL L +D + ++ + + L +
Sbjct: 88 RIRMIFQDPNTSLNPRLRIGQILDFPLRLNTD---LEPEQRRKQIFETLRMVGLLPDHAN 144
Query: 1348 DEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRII--RQEFSNCTVI 1405
+ GQ+Q L R L+ R +I++ DEA AS+D + + L ++ QE + I
Sbjct: 145 YYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYI 204
Query: 1406 TVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438
V + + SD V+V+ G+++E + ++
Sbjct: 205 YVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 8e-11
Identities = 63/241 (26%), Positives = 114/241 (47%), Gaps = 32/241 (13%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I + + +VL ++ +G ++G G+GK+TL+S + RL++ G I
Sbjct: 2 ITIEN--VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTL-FRGSVRTNLDPLGLY--------SDDE--IWK 1324
IDG+++ S K+L KLSI+ QE + R +VR +L G + +D I +
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENHINSRLTVR-DLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 1325 ALEKCQLKTTISSLPNK-LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASI 1383
A+E L+ L ++ LD S GQRQ + VL + ++LDE ++
Sbjct: 119 AIEYLHLED----LSDRYLDE--------LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNL 166
Query: 1384 DSATDAILQRIIRQ---EFSNCTVITVAHRVP-TVIDSDMVMVLSYGKLLEYDEPSKLME 1439
D + +I+R+ E T++ V H + SD ++ L GK+++ P ++++
Sbjct: 167 DMKHSVQIMKILRRLADEL-GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225
Query: 1440 T 1440
Sbjct: 226 P 226
|
Length = 252 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 8e-11
Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 41/222 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L +N +IAV G GAGKS+L G + SG+V + G
Sbjct: 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKF 79
Query: 660 IAYVSQTS--WIQSGSIRDNILYGKPMD--------KARYDKAIKACALDKDINNFDHGD 709
+ V Q I S ++ +I +G P++ R A+ L++ + H
Sbjct: 80 VGLVFQNPDDQIFSPTVEQDIAFG-PINLGLDEETVAHRVSSALHMLGLEELRDRVPH-- 136
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+LSGG+K+R+ +A + + + + D+P + +D L + + L +
Sbjct: 137 ---------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELID--FLNDLPE 185
Query: 770 K---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
TVI THQ++ + E+ D I V++ G+I G +E+ L
Sbjct: 186 TYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227
|
Length = 277 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 8e-11
Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 20/120 (16%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-----KTVIL 774
LSGGQ+QR+ +ARA+ N + L D+P A+D+H+ E VMA L + TVI+
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG-----EEVMAILHQLRDRGHTVII 199
Query: 775 VTHQVEFLSEVDRILVLEGGQITQSGNYQE----------LLLAGTAFEQLVNAHRDAIT 824
VTH + ++ +R++ + G+I ++ QE ++ + + Q V+ R+A+T
Sbjct: 200 VTHDPQVAAQAERVIEIRDGEIVRNPPAQEKVNVAGGTEPVVNTASGWRQFVSGFREALT 259
|
Length = 648 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 9e-11
Identities = 57/242 (23%), Positives = 112/242 (46%), Gaps = 27/242 (11%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFR---LVEP 1269
G+I ++ L + Y LK I E ++G +G GK+T + L R L+
Sbjct: 1 MGKISVKDLDLFYGDFQ--ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 1270 A--GGSILIDGVDI--CSMGLKDLRVKLSIIPQEPTLFRGSVRTNL--DPL--GLYSDDE 1321
G +L+DG DI + + LR ++ ++ Q+P F S+ N+ P G+ +
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK 118
Query: 1322 IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381
+ + +EK LK ++L +++ + S GQ+Q C+ R L +L++DE +
Sbjct: 119 LDEIVEK-SLKG--AALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTS 175
Query: 1382 SIDSATDAILQRIIRQEFSNCTVITVAH------RVPTVIDSDMVMVLSYGKLLEYDEPS 1435
++D + ++ +I++ + T++ V H R+ SD G+++E+ +
Sbjct: 176 ALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRI-----SDKTAFFLNGEIVEFGDTV 230
Query: 1436 KL 1437
L
Sbjct: 231 DL 232
|
Length = 250 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 9e-11
Identities = 47/216 (21%), Positives = 102/216 (47%), Gaps = 13/216 (6%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MG 1285
LKGI F++ ++G +G GK+T + L R+ + G++ + G +I +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLD---PLGLYSDDEIWKALEKCQLKTTISSLPNKL 1342
+ LR ++ ++ Q+P F S+ N+ L D + + LK +++ +++
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQ--AAIWDEV 138
Query: 1343 DSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNC 1402
+ + + S GQ+Q C+ RVL + +++LDE +++D + ++ ++ +
Sbjct: 139 KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQY 198
Query: 1403 TVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
T+I V H + SD G L+E+ + ++
Sbjct: 199 TIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234
|
Length = 252 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 9e-11
Identities = 50/215 (23%), Positives = 98/215 (45%), Gaps = 27/215 (12%)
Query: 1228 NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG-L 1286
L L + +G + ++GR GSGK+T+ + L+ P+ G + +DG+D L
Sbjct: 21 TEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL 80
Query: 1287 KDLRVKLSIIPQEP------TLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSL-- 1338
D+R K ++ Q P T+ V + LG+ +EI + +++ K +
Sbjct: 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPP-EEIRERVDESLKKVGMYEYRR 139
Query: 1339 --PNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID-SATDAILQRI- 1394
P+ L S GQ+Q + +L R ++ DE A +D S ++ I
Sbjct: 140 HAPHLL-----------SGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIK 188
Query: 1395 -IRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKL 1428
+ +++ T+I + H + +++D ++V+ GK+
Sbjct: 189 ELNKKY-GITIILITHYMEEAVEADRIIVMDSGKV 222
|
Length = 280 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-10
Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 40/226 (17%)
Query: 1248 VVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF---- 1303
++G +G GKTTL+ L +P GSI++DG D+ ++ LR ++++ Q LF
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLR-HINMVFQSYALFPHMT 58
Query: 1304 -----------RGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGEN 1352
R R + P + +AL QL+ P++L
Sbjct: 59 VEENVAFGLKMRKVPRAEIKP-------RVLEALRLVQLEEFADRKPHQL---------- 101
Query: 1353 WSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIR--QEFSNCTVITVAHR 1410
S GQ+Q L R L+ + +IL+LDE +++D +Q ++ QE T + V H
Sbjct: 102 -SGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160
Query: 1411 VPTVID-SDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYWSSC 1455
+ SD + ++ GK+ + P ++ E + + VA +
Sbjct: 161 QEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPA--NLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 74/212 (34%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTV----------NLYGSI 660
L+ V+ K + A+ G GAGKS+LL A+ G +SG V + I
Sbjct: 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKII 84
Query: 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT--------- 711
YV Q D+IL H LT
Sbjct: 85 GYVPQ----------DDIL---------------------------HPTLTVRETLMFAA 107
Query: 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-- 769
++ RGL SGG+++R+ +A + ++ + D+P S +D+ +A VM+ L +
Sbjct: 108 KL--RGL--SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ-----VMSLLRRLA 158
Query: 770 ---KTVILVTHQV--EFLSEVDRILVLEGGQI 796
+T+I HQ E D++L+L G++
Sbjct: 159 DTGRTIICSIHQPSSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 1e-10
Identities = 54/227 (23%), Positives = 104/227 (45%), Gaps = 48/227 (21%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
++K+ +F +D + L GV+++I ++ A+ G G GKS+ L L + ++
Sbjct: 7 AIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESE 62
Query: 654 VNLYGSIAYVSQTSW---------------------IQSGSIRDNILYGKPM----DKAR 688
V + G + + +Q + + S+ DN+ YG + K
Sbjct: 63 VRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLE 122
Query: 689 YD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
D A+K L +I + +I + L+LSGGQ+QR+ +ARA+ + L D
Sbjct: 123 IDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQQRLCIARALAVKPKVLLMD 175
Query: 745 DPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSEVDRI 788
+P +D A++ E ++ +L + T+++V+H L +V R+
Sbjct: 176 EPCFGLDP--IASMKVESLIQSLRLRSELTMVIVSHN---LHQVSRL 217
|
Length = 261 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 26/207 (12%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYGSIAYVSQTSWIQSG-S 673
+ LD + + + G GAGKSSLL + L E+P+ SGT+N+ G+ S+T ++
Sbjct: 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTPSDKAIRE 79
Query: 674 IRDNI------------------LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
+R N+ L P K AL + + L
Sbjct: 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQ---ALARAEKLLERLRLKPYAD 136
Query: 716 R-GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL 774
R L+LSGGQ+QR+ +ARA+ + + LFD+P +A+D A + + A T ++
Sbjct: 137 RFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVI 196
Query: 775 VTHQVEFLSEV-DRILVLEGGQITQSG 800
VTH+VE + R++ +E G I + G
Sbjct: 197 VTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 1e-10
Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 40/223 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
L V+L ++ + +A+ G GAGKS+LL A+ GE+ SG V L G
Sbjct: 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARR 77
Query: 660 IAYVSQTSWIQ-SGSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
A + Q S + ++ + + + +A D A+ A AL + DL +
Sbjct: 78 RAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAE-DDALVAAALAQ-------VDLAHLAG 129
Query: 716 RG-LNLSGGQKQRIQLARA---VYNDADI--YLF-DDPFSAVD-AH---TAATLFNECVM 764
R LSGG++QR+QLAR ++ +L D+P SA+D AH
Sbjct: 130 RDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE 189
Query: 765 AALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806
L VI+V H + + DRI++L G++ G E+L
Sbjct: 190 RGL---AVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-10
Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 25/210 (11%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG---GSILIDGVDICSMGLKDL 1289
L ++ G V + G G+GK+TL+ L V P G G I+ +G ++ + ++D
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGTYEGEIIFEGEELQASNIRDT 79
Query: 1290 -RVKLSIIPQEPTLFRG-SVRTN------LDPLGLYSDDEIWKALEKC--QLKTTISSLP 1339
R ++II QE L + SV N + P G+ D ++ +K QLK
Sbjct: 80 ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLK------- 132
Query: 1340 NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ-E 1398
LD + + N GQ+QL + + L K+ R+L+LDE AS+ + A+L IIR +
Sbjct: 133 --LDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLK 190
Query: 1399 FSNCTVITVAHRVPTVID-SDMVMVLSYGK 1427
I ++H++ V SD + V+ G+
Sbjct: 191 AHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 21/206 (10%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---------IAYV 663
+ ++ ++ + + G GAGK++ ILG + G + G I Y+
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYL 77
Query: 664 -SQTSWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
+ ++ D + Y K M KA K ++A +I + E
Sbjct: 78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKE------- 130
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779
LS G +Q+IQ AV ++ ++ + D+PFS +D L + E T+I +H++
Sbjct: 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM 190
Query: 780 EFLSEV-DRILVLEGGQITQSGNYQE 804
E + E+ DR+L+L+ GQ G ++
Sbjct: 191 EHVEELCDRLLMLKKGQTVLYGTVED 216
|
Length = 300 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 1e-10
Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 60/237 (25%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--KISG--------TVNLYGSIAY 662
L V+L+I + +A+ G G+GKS+LL + G I K +G TV G +A
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 663 VSQTSWIQSG------------SIRDNILYG---------------KPMDKARYDKAIKA 695
+ S +G S+ +N+L G K R +A+
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTR 139
Query: 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755
+ +F H QR LSGGQ+QR+ +ARA+ A + L D+P +++D +A
Sbjct: 140 VGM----VHFAH-------QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA 188
Query: 756 ATLFNECVMAAL------EKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQEL 805
VM L + TV++ HQV++ L +RI+ L G + G+ Q+
Sbjct: 189 -----RIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240
|
Length = 262 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 45/214 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L +NL+I + + + G G+GK++LL I G G++ + G
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80
Query: 659 --SIAYVSQ-----TSWIQSGSIR------DNILYGKPMDKARYDKAIKACALDKDINNF 705
+I Y+ Q +++ N+ Y + ++AR ++A L ++ +
Sbjct: 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERAR--AMLEAVGLGDHLDYY 138
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA---ATLFNEC 762
H NLSGGQKQR+ +ARA+ + + L D+P +A+D+ + L +
Sbjct: 139 PH-----------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQK- 186
Query: 763 VMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796
+A + T+++VTH L DRI+ +E G++
Sbjct: 187 -LAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 1e-10
Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 43/222 (19%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
++K+++ +F ++ AI G+++DI + A+ G G GKS+ + L I ++ G
Sbjct: 7 AIKVKDLSFYYNTSKAI---EGISMDIYRNKVTAIIGPSGCGKSTFI-KTLNRISELEGP 62
Query: 654 VNLYGSIAYVSQTSW----------IQSG-----------SIRDNILYG----KPMDKAR 688
V + G + + Q + Q G SI +N+ YG + +A
Sbjct: 63 VKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD 122
Query: 689 YDK----AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
D+ A+K AL +++ + ++ + L LSGGQ+QR+ +ARA+ + L D
Sbjct: 123 LDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQQRLCIARALAIKPKVLLMD 175
Query: 745 DPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEV 785
+P SA+D AT+ E ++ +L + T+ +VTH ++ + V
Sbjct: 176 EPCSALDP--IATMKVEELIHSLRSELTIAIVTHNMQQATRV 215
|
Length = 259 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 47/244 (19%)
Query: 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGEI--- 647
R +K+ G + L GVNL+I A+ G G+GKS+LL L E+
Sbjct: 7 RDLKVSFGQ--------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPE 58
Query: 648 PKISGTVNLYGS-------------IAYVSQT-SWIQSGSIRDNILYGKPMDK------- 686
++SG V L G + V Q + I + SI +N+ G +++
Sbjct: 59 ARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKE 118
Query: 687 --ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
R A++ L ++ + + LSGGQ+QR+ +ARA+ ++ L D
Sbjct: 119 LQERVRWALEKAQLWDEVKD-------RLDAPAGKLSGGQQQRLCIARALAFQPEVLLAD 171
Query: 745 DPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNY 802
+P + +D A + E + L+K T++LVTH + + + D + L GQI + G
Sbjct: 172 EPTANLDPENTAKI--ESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPT 229
Query: 803 QELL 806
+E+
Sbjct: 230 REVF 233
|
Length = 250 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 54/218 (24%), Positives = 90/218 (41%), Gaps = 50/218 (22%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658
LR V+ I + + + G GAGKS+LL I GE G + + G
Sbjct: 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75
Query: 659 ----SIAYVSQT-SWIQSGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDHG 708
I V Q + ++ +N+ GKP + R + LD
Sbjct: 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE---VLD--------- 123
Query: 709 DLTEIGQRGLN----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
L + + LSGG++QR+ +ARA+ N + L D+P +D + +M
Sbjct: 124 -LVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS-----WEIM 177
Query: 765 AALEK-----KTVILVTHQVEFLSEVD-RILVLEGGQI 796
E+ TV++ TH +E ++ + R+L LE G++
Sbjct: 178 RLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 39/225 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAY----- 662
L+ VNLDI A+ G G GKS+ + + L + G + L G Y
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78
Query: 663 ----------VSQTSWIQSGSIRDNILYG------KPMDK--ARYDKAIKACALDKDINN 704
V Q SI DN+ YG D R ++++KA AL ++ +
Sbjct: 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD 138
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
++ + L LSGGQ+QR+ +AR + ++ L D+P SA+D +T E ++
Sbjct: 139 -------KLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDP--ISTTKIEDLI 189
Query: 765 AALEKK-TVILVTHQVEFLSEVDRIL-VLEGGQITQSGNYQELLL 807
L++ T+++VTH ++ + V + G+I +SG ++ +
Sbjct: 190 HKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFI 234
|
Length = 250 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM---AALEKKTVILVT 776
LSGGQ+QR+ +ARA+ + LFD+ SA+D + N V+ A+ T++LVT
Sbjct: 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN--VIRRLASEHDLTMLLVT 204
Query: 777 HQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
H++ F E DR+ + G+I + G E+
Sbjct: 205 HEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 39/187 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662
G++ + + + + G G+GK++LL I G +P +GT+ L G + Y
Sbjct: 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHY 77
Query: 663 VSQTSWIQSG-----SIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+ ++ ++ +N+ G ++ A++A L L
Sbjct: 78 LGH----RNAMKPALTVAENLEFWAAFLGG--EELDIAAALEAVGL---------APLAH 122
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-T 771
+ LS GQK+R+ LAR + ++ I++ D+P +A+DA A LF E + A L +
Sbjct: 123 L--PFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVA-LFAELIRAHLAQGGI 179
Query: 772 VILVTHQ 778
VI TH
Sbjct: 180 VIAATHI 186
|
Length = 207 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 25/234 (10%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+ L RY+ + LKG++ + EG++ ++G G+GK+TL+ L + P G +
Sbjct: 5 IEVEDLHFRYK-DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEP--TLFRGSVRTNL--DPLGL-YSDDEIWK----AL 1326
+ G ++ + K +R K+ ++ Q+P +F +V ++ P+ + DE+ + AL
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEAL 123
Query: 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
+ ++ P L S GQ++ + VL ++VLDE A +D
Sbjct: 124 KAVRMWDFRDKPPYHL-----------SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR 172
Query: 1387 TDAILQRIIRQEFSN--CTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
L I+ N TVI H V + +D V+VL G++L + S L
Sbjct: 173 GQETLMEIL-DRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225
|
Length = 274 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 65/225 (28%), Positives = 99/225 (44%), Gaps = 54/225 (24%)
Query: 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-- 643
ISLQ +V I G F ++ V DI + A+ G G GKS++L ++
Sbjct: 14 ISLQ----NVTISYGTFE--------AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNR 61
Query: 644 ---LGEIPKISGTV-----NLYGS----------IAYVSQTSWIQSGSIRDNILYGK--- 682
L E + G V +LY I V Q SI +NI +G
Sbjct: 62 MNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARIN 121
Query: 683 ----PMDKARYDKAIKACALD--KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736
MD+ KA D KD ++ + G +LSGGQ+QR+ +AR +
Sbjct: 122 GYTGDMDELVERSLRKAAVWDECKD----------KLNESGYSLSGGQQQRLCIARTIAI 171
Query: 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVE 780
+ ++ L D+P SA+D +TL E M L+K T+++VTH ++
Sbjct: 172 EPEVILMDEPCSALDP--ISTLKIEETMHELKKNFTIVIVTHNMQ 214
|
Length = 269 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 3e-10
Identities = 33/108 (30%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 1319 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDE 1378
D E+ +K + +S+LP+K ++ V S GQ+Q + R +++ +IL+LDE
Sbjct: 546 DSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDE 605
Query: 1379 ANASIDSATDAILQRIIRQEFSNCTVIT--VAHRVPTVIDSDMVMVLS 1424
A +S+D+ ++ ++Q+ I N IT +AHR+ T+ ++ + VLS
Sbjct: 606 ATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLS 653
|
Length = 1466 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 3e-10
Identities = 60/246 (24%), Positives = 106/246 (43%), Gaps = 32/246 (13%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I + +K R+ L I+ G V ++G +G+GK+TL+ + L P G I
Sbjct: 3 IRINNVKKRF-GAFG-ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60
Query: 1276 IDG---VDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTN----LDPLGLYSDDEIWKA-- 1325
++G D+ ++ ++D +V + Q LF +V N L + +A
Sbjct: 61 LNGRVLFDVSNLAVRDRKVGF--VFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARV 118
Query: 1326 ---LEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
L QL+ P +L S GQRQ L R L ++L+LDE +
Sbjct: 119 EELLRLVQLEGLADRYPAQL-----------SGGQRQRVALARALAVEPKVLLLDEPFGA 167
Query: 1383 IDSATDAILQRIIR--QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
+D+ L+R +R + T + V H ++ +D V+VL+ G++ + P ++ +
Sbjct: 168 LDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227
Query: 1440 T-NSSF 1444
S F
Sbjct: 228 HPASRF 233
|
Length = 345 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-10
Identities = 55/223 (24%), Positives = 104/223 (46%), Gaps = 21/223 (9%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
+E+R + R+ P V ++ + +G ++G G+GK+TL+ LF L +P G
Sbjct: 5 LEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 1274 ILIDGVDICSMGLKD-LRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLK 1332
I +DG ++ +D +R+ + ++ Q L T + + L + +++ Q +
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTL--TVAENIILGLEPSKGGLIDRRQAR 118
Query: 1333 TTISS------LPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASI-DS 1385
I LP D+ V+D S G++Q + + L + R+L+LDE A +
Sbjct: 119 ARIKELSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174
Query: 1386 ATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGK 1427
D + + + R T+I + H++ V+ +D V VL GK
Sbjct: 175 EADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGK 217
|
Length = 501 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 55/202 (27%), Positives = 89/202 (44%), Gaps = 36/202 (17%)
Query: 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYA------------ILGEI----PKISGT-- 653
L + + I + A+ G G GKS+LL I G+I I +
Sbjct: 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80
Query: 654 --VNLYGSIAYVSQTSWIQSGSIRDNILYGKPM----DKARYD----KAIKACALDKDIN 703
V L I V Q SI +N+ YG + +K D K++K AL ++
Sbjct: 81 DVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK 140
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ H L+LSGGQ+QR+ +AR + + ++ L D+P SA+D A + +
Sbjct: 141 DRLH-------DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP-IATAKIEDLI 192
Query: 764 MAALEKKTVILVTHQVEFLSEV 785
++ TVI+VTH ++ + V
Sbjct: 193 EDLKKEYTVIIVTHNMQQAARV 214
|
Length = 253 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 3e-10
Identities = 58/223 (26%), Positives = 109/223 (48%), Gaps = 26/223 (11%)
Query: 1231 LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL- 1289
L +K + EG ++G +GSGK+T++ L RL+EP G +LIDGVDI + +L
Sbjct: 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101
Query: 1290 ---RVKLSIIPQEPTLF-RGSVRTN----LDPLGLYSDDEIWKALEKCQ---LKTTISSL 1338
R K++++ Q L +V N ++ G+ +++ KAL+ + L+ S
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY 161
Query: 1339 PNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQR--IIR 1396
P++L S G RQ L R L IL++DEA +++D +Q +
Sbjct: 162 PDEL-----------SGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKL 210
Query: 1397 QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438
Q T++ ++H + + D + ++ G++++ P +++
Sbjct: 211 QAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 53/214 (24%), Positives = 84/214 (39%), Gaps = 33/214 (15%)
Query: 1239 TFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQ 1298
+ SE +G++G G GKTT I L +++P G I I+ + S PQ
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV------------SYKPQ 68
Query: 1299 EPTL-FRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357
+ G+VR L KT I+ P +++ + E S G+
Sbjct: 69 YIKADYEGTVRDLL-------SSITKDFYTHPYFKTEIAK-PLQIEQILDREVPELSGGE 120
Query: 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ--EFSNCTVITVAHRVPTVI 1415
Q + L K I +LDE +A +D + ++IR+ E + T V H + +I
Sbjct: 121 LQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMI 179
Query: 1416 D--SDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 1447
D +D ++V EPS N S
Sbjct: 180 DYLADRLIVFE-------GEPSVNGVANPPQSLR 206
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-10
Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 44/216 (20%)
Query: 616 VNLDIKWAQKI-AVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------------- 659
VNL + AQ I A+ G GAGK+SL+ AI G G + L G
Sbjct: 17 VNLTLP-AQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75
Query: 660 --IAYVSQTSWI-QSGSIRDNILYG-KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
I YV Q + + +R N+ YG A++DK + ++ ++ +
Sbjct: 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPG-------- 127
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-----K 770
+LSGG+KQR+ + RA+ ++ L D+P +++D L + LE+
Sbjct: 128 ---SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREL-----LPYLERLAREIN 179
Query: 771 TVIL-VTHQV-EFLSEVDRILVLEGGQITQSGNYQE 804
IL V+H + E L DR++VLE G++ G +E
Sbjct: 180 IPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE 215
|
Length = 352 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 11/213 (5%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LR 1290
V++ ++ T + G VG++G G+GKTT + +V G+I+ID DI + L R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 1291 VKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLD-SSVSD 1348
+ +PQE ++FR SV NL + + +I L Q + + L + + D
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNL--MAVL---QIRDDLSAEQREDRANELMEEFHIEHLRD 132
Query: 1349 E-GENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ-EFSNCTVIT 1406
G++ S G+R+ + R L + ++LDE A +D + ++RII S V+
Sbjct: 133 SMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLI 192
Query: 1407 VAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438
H V + + ++S G L+ + P++++
Sbjct: 193 TDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225
|
Length = 241 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 45/222 (20%)
Query: 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-----------IAYVSQ 665
+L ++ +++A+ G GAGKS+LL I G + SG++ L G ++ + Q
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 666 TSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR-GLN---- 719
+ + S ++ NI G + +K +N L I ++ G+
Sbjct: 79 ENNLFSHLTVAQNIGLG-------LNPGLK-------LNAAQREKLHAIARQMGIEDLLA 124
Query: 720 -----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA---HTAATLFNE-CVMAALEKK 770
LSGGQ+QR+ LAR + + I L D+PFSA+D TL ++ C L
Sbjct: 125 RLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQL--- 181
Query: 771 TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTA 811
T+++V+H +E + + R LV+ G+I G E LL+G A
Sbjct: 182 TLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDE-LLSGKA 222
|
Length = 232 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 4e-10
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 23/149 (15%)
Query: 1248 VVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV----KLSIIPQEPTLF 1303
++G +GSGK+TL+ + RL+EP G +LIDG DI +M K+LR K+S++ Q L
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 1304 -RGSVRTN----LDPLGLYSDDEIWKALEKCQ---LKTTISSLPNKLDSSVSDEGENWSA 1355
+V N L+ G+ + +A E + L+ P++L S
Sbjct: 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDEL-----------SG 163
Query: 1356 GQRQLFCLGRVLLKRNRILVLDEANASID 1384
G +Q L R L IL++DEA +++D
Sbjct: 164 GMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 29/232 (12%)
Query: 1207 PSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL 1266
SS K I R+ ++ LK ++ G R+G++GR G+GK+TL+ L +
Sbjct: 16 GSSSLKKLGILGRKGEVGEFW----ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI 71
Query: 1267 VEPAGGSILIDGVDICSMGLKDLRVKLSIIPQ----EPTLFRGSVRTNLDPLGLYSDDEI 1322
P G++ + G + S+ L + P+ E G + LGL S EI
Sbjct: 72 YPPDSGTVTVRG-RVSSL----LGLGGGFNPELTGRENIYLNGRL------LGL-SRKEI 119
Query: 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
+ +++ S L + +D V +S+G + IL++DE A
Sbjct: 120 DEKIDEII---EFSELGDFIDLPVK----TYSSGMKARLAFAIATALEPDILLIDEVLAV 172
Query: 1383 IDSATDAILQRIIRQEFSNC-TVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432
D+A QR +R+ TVI V+H ++ D +VL GK+
Sbjct: 173 GDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 4e-10
Identities = 58/243 (23%), Positives = 105/243 (43%), Gaps = 30/243 (12%)
Query: 1216 IELRQLKIRYRPNAPLVLKG---ITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I+ ++ Y+PN+P + I +G+ ++G TGSGK+TL+ L L++P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 1273 SILIDGVDICSMG----LKDLRVKLSIIPQEP--TLFRGSVRTNL----DPLGLYSDDEI 1322
+ + + + S +K +R K+ ++ Q P LF +V ++ G+ +
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 1323 WKALEKCQL----KTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDE 1378
A EK ++ P +L S GQ + + +L +LVLDE
Sbjct: 122 KIAAEKLEMVGLADEFWEKSPFEL-----------SGGQMRRVAIAGILAMEPEVLVLDE 170
Query: 1379 ANASIDSATDAILQRIIRQ-EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436
A +D + ++ S TV+ V H + V D +D V +L G ++ PS
Sbjct: 171 PTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230
Query: 1437 LME 1439
+ +
Sbjct: 231 VFQ 233
|
Length = 288 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 4e-10
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 32/194 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS- 671
L+ +NLDI + A+ G G GKS+ + L + ++ +V G I Y Q + +S
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKT-LNRMVELVPSVKTTGKILYRDQNIFDKSY 98
Query: 672 --------------------GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
SI DN+ YG P DK ++K + D
Sbjct: 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYG-PKIHGIKDKKTLDEIVEKSLRGAAIWD-- 155
Query: 712 EIGQR----GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
E+ R LSGGQ+QR+ +AR + + D+ L D+P SA+D +TL E ++ L
Sbjct: 156 ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDP--ISTLKVEELVQEL 213
Query: 768 EKK-TVILVTHQVE 780
+K ++I+VTH ++
Sbjct: 214 KKDYSIIIVTHNMQ 227
|
Length = 271 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 37/194 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
L V+LDI A G G GKS+ L + + +++G + L G Y +
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 668 WIQ---------------SGSIRDNILYGKPM-----DKARYD----KAIKACALDKDIN 703
++ SI +N+ YG + KA D +++ L +++
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ + + G LSGGQ+QR+ +ARA+ ++ L D+P SA+D A + E +
Sbjct: 155 D-------RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV-EELI 206
Query: 764 MAALEKKTVILVTH 777
+ T+++VTH
Sbjct: 207 DELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-10
Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 51/225 (22%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I L L + Y +L+ ++ T + G R+G+VGR G+GK+TL+ L +EP G +
Sbjct: 4 ITLENLSLAYG--DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTI 1335
+++ + QEP L +T LD + + E+ + L +L+
Sbjct: 62 RPKG-----------LRVGYLSQEPPLD--PEKTVLDYV-IEGFGELRELLA--ELEEAY 105
Query: 1336 SSLPNKLD------SSVSDEGENW-------------------------SAGQRQLFCLG 1364
+ L + D ++ +E + W S G R+ L
Sbjct: 106 ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALA 165
Query: 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAH 1409
R LL+ +L+LDE +D + L+ +++ TVI V+H
Sbjct: 166 RALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPGTVIVVSH 208
|
Length = 530 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 5e-10
Identities = 57/234 (24%), Positives = 104/234 (44%), Gaps = 24/234 (10%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE R L Y + L I +R+ V+G G+GK+TL +++P GS+L
Sbjct: 4 IETRDLCYSYSGSKE-ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEP--TLFRGSVRTNL--DPLGLYSDDE-----IWKAL 1326
I G I ++++R + ++ Q P +F +V ++ P+ L D+E + AL
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSAL 122
Query: 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
L+ +P+ L S G+++ + V+ ++LVLDE A +D
Sbjct: 123 HMLGLEELRDRVPHHL-----------SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQ 171
Query: 1387 TDAILQRIIRQ--EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
L + E TVI H++ V + +D + V+ G+++ Y ++
Sbjct: 172 GVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 5e-10
Identities = 58/221 (26%), Positives = 104/221 (47%), Gaps = 41/221 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ-- 670
L+G++L I K A+ G GAGKS+LL + G G V + G W++
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
Query: 671 -------------SGSIRDNILYGKPMD--------KARYDKAIKACALDKDINNFDHGD 709
S ++ D++ +G P++ + R ++A+KA + +F
Sbjct: 81 VGLVFQDPDDQVFSSTVWDDVAFG-PVNMGLDKDEVERRVEEALKAV----RMWDFRD-- 133
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+ +LS GQK+R+ +A + D D+ + D+P + +D TL ++ L
Sbjct: 134 -----KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME--ILDRLHN 186
Query: 770 --KTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807
KTVI+ TH V+ +E D+++VL+ G++ G+ + LL
Sbjct: 187 QGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGD-KSLLT 226
|
Length = 274 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 8e-10
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 42/196 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLL------YAILGEIPKISGTVNLYGS------- 659
L+ +NLDI Q A G G GKS+LL Y + E + G + L G
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQ-RAEGEILLDGENILTPKQ 87
Query: 660 --------IAYVSQTSWIQSGSIRDNILYG---------KPMDKARYDKAIKACALDKDI 702
+ V Q SI DNI +G MD+ R + A+ AL ++
Sbjct: 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDE-RVEWALTKAALWNEV 146
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ ++ Q G +LSGGQ+QR+ +AR + ++ L D+P SA+D + + E
Sbjct: 147 KD-------KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRI--EE 197
Query: 763 VMAAL-EKKTVILVTH 777
++ L + TV++VTH
Sbjct: 198 LITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 9e-10
Identities = 58/233 (24%), Positives = 97/233 (41%), Gaps = 48/233 (20%)
Query: 600 GNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658
G+FS D + + A+ G G+GK++L+ I G G + L G
Sbjct: 10 GDFSLD----------ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGR 59
Query: 659 ----------------SIAYVSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
I YV Q S+R N+ YG M +AR + + +
Sbjct: 60 TLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYG--MKRARPSERRISFERVIE 117
Query: 702 INNFDHGDLTEIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
+ H + R LSGG+KQR+ + RA+ + + L D+P +A+D
Sbjct: 118 LLGIGH-----LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD----DPRKY 168
Query: 761 ECVMAALEKKT------VILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
E ++ LE+ ++ V+H + E L DR++VLE G++ +G E+
Sbjct: 169 E-ILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 57/259 (22%), Positives = 114/259 (44%), Gaps = 36/259 (13%)
Query: 1206 PPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFR 1265
P++ + IE R L + Y L ++ E ++G +G GK+T + + R
Sbjct: 30 DPAASSGETVIEARDLNVFY--GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINR 87
Query: 1266 L------------VEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP 1313
+ + G ++ VD + LR ++ ++ Q+P F S+ N+
Sbjct: 88 MNDLIDAARVEGELTFRGKNVYDADVDPVA-----LRRRIGMVFQKPNPFPKSIYDNV-A 141
Query: 1314 LGLY-------SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366
GL D+ + ++L + L + ++LDSS G + S GQ+Q C+ R
Sbjct: 142 YGLKIQGYDGDIDERVEESLRRAALWDEVK---DQLDSS----GLDLSGGQQQRLCIARA 194
Query: 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTV--IDSDMVMVLS 1424
+ ++++DE +++D + ++ +I + TV+ V H + I + L+
Sbjct: 195 IAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLT 254
Query: 1425 YGKLLEYDEPSKLMETNSS 1443
G+L+E+D+ K+ E S
Sbjct: 255 GGELVEFDDTDKIFENPES 273
|
Length = 285 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 1e-09
Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 39/224 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL---GEIP--KISGTVNLYGSIAY----- 662
++ V + I Q A+ G G GK++LL +I IP ++ G + G Y
Sbjct: 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLD 78
Query: 663 ----------VSQTSWIQSGSIRDNILYGKPM----DKARYD----KAIKACALDKDINN 704
V Q SI DN+ +G + K + D +++K AL ++ +
Sbjct: 79 VTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS 138
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
E+ + G LSGGQ+QR+ +ARA+ + ++ L D+P SA+D AT E ++
Sbjct: 139 -------ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP--IATQRIEKLL 189
Query: 765 AAL-EKKTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
L E T+++VTH + + + D I + G++ + G +E++
Sbjct: 190 EELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233
|
Length = 250 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 1e-09
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 10/150 (6%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
+L+G++ +G V+GR G GKTTL+ L L+ GSI +DG DI + + R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE-RA 73
Query: 1292 KLSI--IPQEPTLF-RGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSD 1348
+ I +PQ +F R +V NL GL + ++ I L L +
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLL-TGL----AALPRRSR-KIPDEIYELFPVLKEMLGR 127
Query: 1349 EGENWSAGQRQLFCLGRVLLKRNRILVLDE 1378
G + S GQ+Q + R L+ R ++L+LDE
Sbjct: 128 RGGDLSGGQQQQLAIARALVTRPKLLLLDE 157
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 57/213 (26%), Positives = 91/213 (42%), Gaps = 38/213 (17%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658
L G+N+ I + + + G GAGKS+LL I E SGT+ + G
Sbjct: 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAI 73
Query: 659 -----SIAYVSQTS-WIQSGSIRDNILY-----GKPMDKARYDKAIKACALDKDINNFDH 707
I V Q + ++ +N+ + G P + R K + A AL+ + H
Sbjct: 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIR--KRVPA-ALELVGLSHKH 130
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA---ATLFNECVM 764
L LSGG++QR+ +ARA+ N I + D+P +D T L +
Sbjct: 131 RALPA------ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK 184
Query: 765 AALEKKTVILVTHQVEFLSEVD-RILVLEGGQI 796
A TV++ TH E + R++ LE G++
Sbjct: 185 AGT---TVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 29/218 (13%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----------- 659
+ GV++ + G G+GKS+LL + G + +GTV+L G
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 660 --IAYVSQTSWIQSG-SIRDNILYGK-------PMDKARYDKAIKACALDKDINNFDHGD 709
+A V Q S ++RD + G+ D + ++++ D
Sbjct: 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD 134
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
++ LSGG++QR+ +ARA+ + + L D+P + +D A
Sbjct: 135 MS-------TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATG 187
Query: 770 KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
TV+ H + + D ++VL+GG++ +G +E+L
Sbjct: 188 VTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 31/222 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
+ V+L+++ + + + G GAGK++L I G SGTV G
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 660 -IAYVSQTSWIQSG-SIRDNIL--------YGKPMDKARYDKAIKACALDKDINNFDHGD 709
IA Q + + G ++ +N+ + + R K + A ++ +
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEERE-ARERARELLEFVG 138
Query: 710 LTE-IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPF---SAVDAHTAATLFNECVMA 765
L E + NLS GQ++R+++ARA+ + L D+P + + A L E +
Sbjct: 139 LGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRE--LR 196
Query: 766 ALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T++L+ H ++ + + DRI+VL G++ G +E+
Sbjct: 197 DRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238
|
Length = 250 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 41/209 (19%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVN 655
+F + A L ++L+ + Q A+ G G GKS+ L + L ++ G +
Sbjct: 13 SFFYGDFQA---LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL 69
Query: 656 LYGSIAY---------------VSQTSWIQSGSIRDNILYGKPM----DKA----RYDKA 692
L G Y V Q SI +N+ YG + DKA R +++
Sbjct: 70 LDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERS 129
Query: 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
++ AL ++ + + + L LSGGQ+QR+ +ARA+ + ++ L D+P SA+D
Sbjct: 130 LRHAALWDEVKD-------RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182
Query: 753 HTAATLFNECVMAALEKK-TVILVTHQVE 780
AT E ++ L+ + T+I+VTH ++
Sbjct: 183 --IATQKIEELIHELKARYTIIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 38/194 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISG------------TVN 655
++G+++ + + A+ G G+GKS+ L ++ +I +++G +N
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 656 LY---GSIAYVSQTSWIQSGSIRDNILYGKPM----DKARYDK----AIKACALDKDINN 704
+Y I V Q + SI +NI + DK D+ ++K AL + +
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD 155
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
++ + L LSGGQ+QR+ +ARA+ DI L D+P SA+D + L E M
Sbjct: 156 -------DLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQL--EETM 206
Query: 765 AALEKK-TVILVTH 777
L+K T+I+VTH
Sbjct: 207 FELKKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 30/225 (13%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
+L ++ TF G G++G GSGK+TL+ L R P+ G IL+D + S K
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 1292 KLSIIPQEPTLFRGSVRTNLDPLGLY-----------SDDE-IWKALEKCQLKTTISSLP 1339
K++ +PQ+ G L +G Y +D E + +A+ LK L
Sbjct: 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK----PLA 141
Query: 1340 NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATD----AILQRII 1395
++L S+ S G+RQ + ++ + +R L+LDE +++D A A++ R+
Sbjct: 142 HRLVDSL-------SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLS 194
Query: 1396 RQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
++ TVI V H + D ++ L G+++ P++LM
Sbjct: 195 QER--GLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237
|
Length = 265 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 54/236 (22%), Positives = 97/236 (41%), Gaps = 31/236 (13%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+ L +Y ++G++ G G++G G+GKTT I L L++P G
Sbjct: 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLG-LYS---------DDEIWK 1324
+ G D+ +++R ++ I+ Q+ ++ + NL LY DE+
Sbjct: 59 VAGHDVVREP-REVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLD 117
Query: 1325 ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
+ L D V +S G R+ + R L+ R +L LDE +D
Sbjct: 118 FVG----------LLEAADRLVK----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLD 163
Query: 1385 SATDAILQRIIR--QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
T A + I +E T++ H + D V ++ +G+++ P +L
Sbjct: 164 PQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 27/166 (16%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV- 1291
+ + EG ++G +GSGK+TL+ L RL+EP G IL+DG DI + +LR
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 1292 ---KLSIIPQEPTLFRGSVRTNLD--PLGL--------YSDDEIWKALEKCQLKTTISSL 1338
K+S++ Q L RT L+ GL ++ +ALE L+
Sbjct: 104 RRKKISMVFQSFALL--PHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKY 161
Query: 1339 PNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
PN+L S G +Q L R L IL++DEA +++D
Sbjct: 162 PNEL-----------SGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 2e-09
Identities = 48/217 (22%), Positives = 87/217 (40%), Gaps = 28/217 (12%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L V+ ++ + + G GAGK++L I G + SG+V G
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 660 -IAYVSQTSWI-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
I Q + ++ +N++ +A +++ L +G
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135
Query: 718 L------NLSGGQKQRIQLARAVYNDADIYLFDDPF---SAVDAHTAATLFNECVMAALE 768
L LS GQ++R+++ARA+ D + L D+P + + A L E
Sbjct: 136 LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE---LRER 192
Query: 769 KKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQE 804
TV+LV H ++ + + DR+ VL+ G++ G E
Sbjct: 193 GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 42/221 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAY-------VS 664
L+G+N + + +A+ G GAGKS+L G + SG V + G I Y V
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77
Query: 665 QTSWIQ---------SGSIRDNILYGKPMD--------KARYDKAIKACALDKDINNFDH 707
+T I + ++ +++ +G P++ + R +A+KA ++ N H
Sbjct: 78 KTVGIVFQNPDDQLFAPTVEEDVAFG-PLNLGLSKEEVEKRVKEALKAVGMEGFENKPPH 136
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
+LSGGQK+R+ +A + +I + D+P S +D A+ + ++ L
Sbjct: 137 -----------HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMK--LLYDL 183
Query: 768 EKK--TVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805
K+ T+I+ TH V+ + D++ V+ G+I + G +E+
Sbjct: 184 NKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 57/237 (24%), Positives = 111/237 (46%), Gaps = 22/237 (9%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFR---LVEPAG 1271
+ + L + Y N LK I ++G +G GK+TL+ L R L+E
Sbjct: 3 KFNIENLDLFYGENQ--ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK 60
Query: 1272 --GSILIDGVDI-CSMGLKDLRVKLSIIPQEPTLFRGSVRTN----LDPLGLYSDDEIWK 1324
G + +DG DI ++ + DLR+K+ ++ Q+P F S+ N L G+ + +
Sbjct: 61 ITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDE 120
Query: 1325 ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
+E+ L+ ++L +++ + S GQ+Q C+ R + ++++DE +++D
Sbjct: 121 VVER-SLRG--AALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALD 177
Query: 1385 S-ATDAI--LQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
AT I L +++ + T++ V H + SD G+L+E+D+ +
Sbjct: 178 PIATHKIEELMEELKKNY---TIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231
|
Length = 249 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 44/240 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
++ VNLD++ A+ G G GK++ L AI L +++G + L G Y +
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 668 WIQSGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGL------ 718
+ + R +++ KP + +D + L I + DH L E+ +R L
Sbjct: 80 PV-AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKL-AGIRDRDH--LMEVAERSLRGAALW 135
Query: 719 ------------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
LSGGQ+QR+ +ARA+ + +I L D+P SA+D + A + E +M
Sbjct: 136 DEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI--EDLMTD 193
Query: 767 LEK-KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAIT 824
L+K T+I+VTH + + V D G + + G +QL RD T
Sbjct: 194 LKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHG----------PTDQLFTNPRDERT 243
|
Length = 252 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 23/161 (14%)
Query: 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302
G RV ++G +G+GK+TL++ + + PA GS+ ++G D + R +S++ QE L
Sbjct: 25 GERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSMLFQENNL 82
Query: 1303 FRG-SVRTN----LDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357
F +V N L+P GL + + L + I L +L + S GQ
Sbjct: 83 FSHLTVAQNIGLGLNP-GLKLNAAQREKLHAIARQMGIEDLLARLPGQL-------SGGQ 134
Query: 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQE 1398
RQ L R L++ IL+LDE +++D A +RQE
Sbjct: 135 RQRVALARCLVREQPILLLDEPFSALDPA--------LRQE 167
|
Length = 232 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 35/180 (19%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
+ ++ T + G + + G G+GKTTL+ L L+ P G + G ++++R
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQG-----EPIQNVRE 71
Query: 1292 KLSIIPQEPTLFRG---------SVRTNL----DPLGLYSDDEIWKALEKCQLKTTISSL 1338
+ L+ G + NL G + IW+AL + L + L
Sbjct: 72 S----YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGL-AGLEDL 126
Query: 1339 P-NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ 1397
P +L SAGQ++ L R+ L + +LDE ++D A+L ++
Sbjct: 127 PVGQL-----------SAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAA 175
|
Length = 209 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 69/267 (25%), Positives = 123/267 (46%), Gaps = 53/267 (19%)
Query: 1192 HIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGR 1251
+P + P ++E + +P KG +R + + GI+ T G +G+VG
Sbjct: 268 PLPEDAPVLLEVEDLRVWFPIKGGF------LRRTVDHLRAVDGISLTLRRGQTLGLVGE 321
Query: 1252 TGSGKTTLISALFRLVEPAGGSILIDGVDICSM---GLKDLRVKLSIIPQEPTLFRGSVR 1308
+GSGK+TL AL RL+ G I DG DI + ++ LR ++ ++ Q+P GS
Sbjct: 322 SGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY---GS-- 375
Query: 1309 TNLDPL---------GLY------SDDE----IWKALEKCQL-KTTISSLPNKLDSSVSD 1348
L P GL S E + +ALE+ L T + P++
Sbjct: 376 --LSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHE------- 426
Query: 1349 EGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIR--QEFSNCTVIT 1406
+S GQRQ + R L+ + +++LDE +++D + A + ++R Q+ + +
Sbjct: 427 ----FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLF 482
Query: 1407 VAHRVPTVID--SDMVMVLSYGKLLEY 1431
++H + V+ V+V+ GK++E
Sbjct: 483 ISHDL-AVVRALCHRVIVMRDGKIVEQ 508
|
Length = 534 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 55/231 (23%), Positives = 114/231 (49%), Gaps = 35/231 (15%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT-- 666
+ ++G++ DI+ + +A+ G G+GKS +ILG +P + GSI + +
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS-PAAAHPSGSILFDGEDLL 80
Query: 667 --SWIQSGSIRDN---ILYGKPM--------------DKARYDKAI-KACALDKDINNFD 706
S Q +R N +++ +PM + R + + +A A + + +
Sbjct: 81 AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLE 140
Query: 707 HGDLTEIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ E +R L+ LSGGQ+QR+ +A A+ N+ D+ + D+P +A+D A + +
Sbjct: 141 LVGIPEPEKR-LDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD- 198
Query: 762 CVMAALEKK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLA 808
++ L+ + ++ +TH + + + DR+ V++ G+I ++G + L A
Sbjct: 199 -LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAA 248
|
Length = 534 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 2e-09
Identities = 50/206 (24%), Positives = 105/206 (50%), Gaps = 23/206 (11%)
Query: 1248 VVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDIC--SMGLKDLRVKLSIIPQEP 1300
++G +G GK+T + ++ R+ + + G IL +G++I ++ + +LR ++ ++ Q+P
Sbjct: 52 LIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111
Query: 1301 TLFRGSVRTNLDPLGLYS--------DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGEN 1352
F S+ N+ Y+ D+ + ++L K L + ++L SS +
Sbjct: 112 NPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK---DRLHSSAL----S 164
Query: 1353 WSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVP 1412
S GQ+Q C+ R L + +L+LDE +++D ++A ++ +I + ++I V H +
Sbjct: 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQ 224
Query: 1413 TVID-SDMVMVLSYGKLLEYDEPSKL 1437
+ SD G L+EYD+ ++
Sbjct: 225 QALRVSDRTAFFLNGDLVEYDQTEQI 250
|
Length = 268 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 47/221 (21%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658
E + L GV L +K + IA+ G G+GKS+LL + G SG V+L G
Sbjct: 20 EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDE 79
Query: 659 ---------SIAYVSQT-SWIQSGSIRDNI-----LYGKPMDKARYDKAIKACALDKDIN 703
+ +V Q+ I + + +N+ L G+ ++R A AL + +
Sbjct: 80 EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNG----AKALLEQLG 135
Query: 704 NFDHGDLTEIGQR----GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT----A 755
+G+R LSGG++QR+ LARA D+ D+P +D T A
Sbjct: 136 ---------LGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA 186
Query: 756 ATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796
LF+ + T+ILVTH ++ + DR L L GQ+
Sbjct: 187 DLLFS---LNREHGTTLILVTHDLQLAARCDRRLRLVNGQL 224
|
Length = 228 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-09
Identities = 56/235 (23%), Positives = 112/235 (47%), Gaps = 38/235 (16%)
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQ 665
P+ A L+ V+ + + +A+ G G+GKS+L + G + +GT+ + G + +
Sbjct: 16 PDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGG-MVLSEE 74
Query: 666 TSW---------IQS-------GSIRDNILY-----GKPMDK--ARYDKAIKACALDKDI 702
T W Q+ +++D++ + G P ++ R D+A++ ++ +
Sbjct: 75 TVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFL 134
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
N H LSGGQKQR+ +A + DI + D+ S +D + E
Sbjct: 135 NREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL-ET 182
Query: 763 VMAALEKK--TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
V E+K TV+ +TH ++ ++ DR++V+ G+I + G +E+ +G +++
Sbjct: 183 VRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGHMLQEI 237
|
Length = 279 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 3e-09
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 16/91 (17%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD-AHTAATLFNECVMAALEKK------- 770
LSGGQKQR+ +ARA+ ++ + L D+ SA+D A T + L L K
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL-------ELLKDINRELGL 192
Query: 771 TVILVTHQVEFLSEV-DRILVLEGGQITQSG 800
T++L+TH+++ + + DR+ V++ G++ + G
Sbjct: 193 TIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223
|
Length = 343 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 49/198 (24%), Positives = 90/198 (45%), Gaps = 15/198 (7%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L ++L +K + G GAGK++ + ILG I SG + G + + + G
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG 75
Query: 673 SIRDN-ILYGKPMDKARYDKAIKACAL---DKDINN-FDHGDLTEIGQRGL-NLSGGQKQ 726
++ + Y P AR + + A L K I+ D L + ++ + S G KQ
Sbjct: 76 ALIEAPGFY--PNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQ 133
Query: 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV- 785
R+ +A A+ + D+ + D+P + +D L + + TV++ +H LSE+
Sbjct: 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHL---LSEIQ 190
Query: 786 ---DRILVLEGGQITQSG 800
DRI ++ G++ + G
Sbjct: 191 KVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 63/227 (27%), Positives = 96/227 (42%), Gaps = 42/227 (18%)
Query: 1224 RYRPNAPLVLKGITCTFSE-------------GTRVGVVGRTGSGKTTLISALFRLVEPA 1270
R PL+L ++ + E G V VVGR+G GK+TL+ L L P+
Sbjct: 6 RLNQGTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS 65
Query: 1271 GGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR-GSVRTNLDPLGLYSD--DEIWKALE 1327
G +L + L + R ++ Q+ L V N+ LGL D +AL
Sbjct: 66 AGELLAG-----TAPLAEAREDTRLMFQDARLLPWKKVIDNVG-LGLKGQWRDAALQALA 119
Query: 1328 KCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSAT 1387
L + P L S GQ+Q L R L+ R +L+LDE ++D+ T
Sbjct: 120 AVGLADRANEWPAAL-----------SGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
Query: 1388 DAILQRII-----RQEFSNCTVITVAHRVP-TVIDSDMVMVLSYGKL 1428
+Q +I + F TV+ V H V V +D V+++ GK+
Sbjct: 169 RIEMQDLIESLWQQHGF---TVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 3e-09
Identities = 65/237 (27%), Positives = 104/237 (43%), Gaps = 31/237 (13%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYA---ILGEIP--KISGTVNLYGSIAYVSQTSWI- 669
V+L I + IA G G GKS+LL + IP K+ G + Y SQ + +
Sbjct: 39 VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVK 98
Query: 670 ---QSG-----------SIRDNILYGKPMD--KARYDKAIKACALDKDINNFDHGDLTEI 713
Q G SI +NI + + K D+ ++ I L E
Sbjct: 99 LRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKE- 157
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVI 773
+G LSGGQ+QR+ +ARA+ D+ L D+P SA+D + + E + E+ T+I
Sbjct: 158 --KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQV-EELCLELKEQYTII 214
Query: 774 LVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA-----HRDAITG 825
+VTH ++ S V +I + G + L+ + EQ+ + R+ I+G
Sbjct: 215 MVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEAREYISG 271
|
Length = 274 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 34/225 (15%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG----LKD 1288
+ + F +G +VG+TGSGK+TLI + L++P G++ +D + I ++
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 1289 LRVKLSIIPQ--EPTLFRGSV-----------RTNLDPLGLYSDDEIWKALEKCQLKTTI 1335
+R ++ ++ Q E LF +V + NLD + Y+ + ++ + +
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLL---MDLGFSRDVM 139
Query: 1336 SSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRII 1395
S P ++ S GQ + + +L I+VLDE A +D + + R++
Sbjct: 140 SQSPFQM-----------SGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLL 188
Query: 1396 R--QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
+ Q N T+I V+H + V +D V+V+ G ++ P +L
Sbjct: 189 KSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
Length = 286 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-09
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 617 NLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG---TVNLYGSIAYVSQTSWIQSGS 673
+ ++ + +CG G GKSSL + ILGE+ + G T G + YV Q ++ G+
Sbjct: 472 SFEVPSGNNLLICGPNGCGKSSL-FRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGT 530
Query: 674 IRDNILYGKPMDKARY-DKAIKACALDKDINNF-DHGDLTEIGQRGLN----------LS 721
+RD I+Y P + + DKD+ D+ LT I +R LS
Sbjct: 531 LRDQIIY--PDSSEDMKRRGLS----DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLS 584
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
GG+KQRI +AR Y+ + D+ SAV ++ C + T+ V+H+
Sbjct: 585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGI---TLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-09
Identities = 43/227 (18%), Positives = 95/227 (41%), Gaps = 59/227 (25%)
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------- 659
R ++ + + + G VG+G++ L+ + G + G + L G
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 660 IAYVSQ----TSWIQSGSIRDNI-------------LYG--------KPMDKARYDKAIK 694
+AY+++ + + SI N+ G + + R A+K
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 695 ACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754
+++++I LSGG +Q++ +++ + ++ +FD+P +D
Sbjct: 400 CHSVNQNITE---------------LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444
Query: 755 AATLFNECVMAAL--EKKTVILVTHQV-EFLSEVDRILVLEGGQITQ 798
A ++ VM L + K +++V+ ++ E ++ DRI V G++TQ
Sbjct: 445 KAEIYK--VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 25/181 (13%)
Query: 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV---DIC-SMGLKDLRVKLSIIP 1297
G+ G +G+GK+TL+ + L +P GG+I+++G D + L + K+ ++
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 1298 QEPTLF-RGSVRTNLD-PLGLYSDDEIW----KALEKCQLKTTISSLPNKLDSSVSDEGE 1351
Q+ LF +VR NL L + E + L+ L ++ P +L
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQL--------- 132
Query: 1352 NWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQ---RIIRQEFSNCTVITVA 1408
S G++Q L R L + +L+LDE +++D A L + I++ N VI V
Sbjct: 133 --SGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL-NIPVIFVT 189
Query: 1409 H 1409
H
Sbjct: 190 H 190
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 31/186 (16%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
G++ + + + V G G GK++LL + G + SG V G Q
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNG------TALAEQ 67
Query: 671 SGSIRDNILYGKPMDKARYDKAIKA-----------CALDKDINNFDHGDLTEIGQRGLN 719
NILY + +K A+ L +G G
Sbjct: 68 RDEPHRNILY------LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFE 121
Query: 720 ------LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TV 772
LS GQ++R+ LAR + A +++ D+P +A+D L + A L + V
Sbjct: 122 DLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDK-AGVALLAGLLRAHLARGGIV 180
Query: 773 ILVTHQ 778
+L THQ
Sbjct: 181 LLTTHQ 186
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 4e-09
Identities = 56/233 (24%), Positives = 109/233 (46%), Gaps = 15/233 (6%)
Query: 1211 PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--VE 1268
P + + E+ +L Y LK I E ++G +G GK+T + R+ +
Sbjct: 12 PTQQKSEVNKLNFYY--GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLY 69
Query: 1269 PAG---GSILI--DGVDICSMGLK--DLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDE 1321
P G I++ D V+I S + ++R+++S++ Q+P F S+ N+ GL
Sbjct: 70 PGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENV-AYGLRIRGV 128
Query: 1322 IWKAL--EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEA 1379
+++ E+ + ++L +++ + D N S GQ+Q C+ R L IL+ DE
Sbjct: 129 KRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEP 188
Query: 1380 NASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEY 1431
+++D A ++ +I + T++ V H + SD + G+L+E+
Sbjct: 189 TSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241
|
Length = 265 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 22/239 (9%)
Query: 1216 IELRQLKIRYRPNAPL---VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
I L+ + Y+ P L + T +G+ +G TGSGK+T++ L L P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1273 SILIDGVDICSMG----LKDLRVKLSIIPQ--EPTLFRGSVRTNL----DPLGLYSDDEI 1322
S+ +D I S +K +R K+ ++ Q E LF +V ++ G+ ++
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
A EK L SL K + S GQ + + +L +ILVLDE A
Sbjct: 123 ALAREKLALVGISESLFEKNPFEL-------SGGQMRRVAIAGILAMEPKILVLDEPTAG 175
Query: 1383 IDSATDAILQRIIRQ-EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
+D L + ++ S T++ V H + V + +D V VL GKL+ +P + +
Sbjct: 176 LDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234
|
Length = 280 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 4e-09
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 42/201 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSIAYVSQTSWIQS 671
L+GVNL IK + A+ G G+GKS+L I+G +++ G I + +
Sbjct: 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTE-----GEILFKGE------ 64
Query: 672 GSIRDNILYGKPMDKAR--------YDKAIKACALDKDINNFDHGDLTEIGQRGLN--LS 721
+I P ++AR Y I +F R +N S
Sbjct: 65 -----DITDLPPEERARLGIFLAFQYPPEIPGVKN----ADF---------LRYVNEGFS 106
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781
GG+K+R ++ + + + D+ + D+P S +D + E K+V+++TH
Sbjct: 107 GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRL 166
Query: 782 LSEV--DRILVLEGGQITQSG 800
L + DR+ VL G+I +SG
Sbjct: 167 LDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 65/271 (23%), Positives = 124/271 (45%), Gaps = 42/271 (15%)
Query: 1191 MHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRY-------RPNAPLVLKGITCTFSEG 1243
+++PPE + +P + + I Y + NA ++ K +T
Sbjct: 23 IYLPPERKKVSGGGKP--------HVVAKNFSIYYGEFEAVKKVNADILSKYVT------ 68
Query: 1244 TRVGVVGRTGSGKTTLISALFRLVE--PA---GGSILIDGVDICSMGLKD--LRVKLSII 1296
++G +G GK+T + A+ R+ + P+ G+++ DG DI + LR K+ ++
Sbjct: 69 ---AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMV 125
Query: 1297 PQEPTLFRGSVRTNL--DPL--GLYSDDEIWKALEKCQLKTTI-SSLPNKLDSSVSDEGE 1351
Q+P F S+ N+ P G+ ++ + +EK K + + ++LD +
Sbjct: 126 FQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNAL---- 181
Query: 1352 NWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRV 1411
S GQ+Q C+ R L IL+LDE +++D A ++ +I++ + T++ V H +
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNM 241
Query: 1412 PTVID-SDMVMVLSYGKLLEYDEPSKLMETN 1441
SD M G L+E+ P+ + TN
Sbjct: 242 QQASRVSDYTMFFYEGVLVEH-APTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 5e-09
Identities = 74/354 (20%), Positives = 125/354 (35%), Gaps = 95/354 (26%)
Query: 495 EAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSA------PLNAST--IFTVLATLRSMG 546
E + + + S+++ LG L G AST T++ L +
Sbjct: 220 EYRHHIIRAN-TFHLLAVNWSNIMLLG--LIGLVFWLALSLGWASTNVAATIVLVLLFLR 276
Query: 547 EPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN-------DDVRRISLQKSDRSVKI-- 597
P+ L ++ +V+F++I L + D + + L R+V+
Sbjct: 277 TPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLEL----RNVRFAY 332
Query: 598 QEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY 657
Q+ F P +NL IK + + + G G+GKS+L + G LY
Sbjct: 333 QDNAFHVGP---------INLTIKRGELVFLIGGNGSGKSTLAMLLTG----------LY 373
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGKPMD---KARYDKAIKAC------------------ 696
QSG I + GKP+ Y K A
Sbjct: 374 QP----------QSGEILLD---GKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKAS 420
Query: 697 --ALDKDINNFDHGDLTEIGQRG---LNLSGGQKQRIQLARAVYNDADIYLFD------D 745
++K + + T + L LS GQK+R+ L A+ + DI + D D
Sbjct: 421 PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQD 480
Query: 746 P-FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798
P F L E + KT+ ++H + DR+L + GQ+++
Sbjct: 481 PAFRREFYQVLLPLLKE------QGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 5e-09
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 32/177 (18%)
Query: 1231 LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290
++ G++ T + G + + G GSGKTTL+ + L+ PA G+I +DG DI D
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI-----DDPD 70
Query: 1291 VKLSII------PQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLD- 1343
V + +P L +V NL E W A L + L+
Sbjct: 71 VAEACHYLGHRNAMKPAL---TVAENL---------EFWAAF----LGGEELDIAAALEA 114
Query: 1344 ---SSVSD-EGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIR 1396
+ ++ SAGQ++ L R+L+ I +LDE A++D+A A+ +IR
Sbjct: 115 VGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIR 171
|
Length = 207 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 5e-09
Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 45/214 (21%)
Query: 626 IAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYGSI----------AYVSQTS-WIQS 671
+AV GS GAGK++L+ A+ PK SG+V L G AYV Q +I +
Sbjct: 54 LAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPT 113
Query: 672 GSIRDNILY----------GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL--N 719
++R+++++ K + R D+ ++A L K N T IG G
Sbjct: 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN-------TRIGVPGRVKG 166
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-----KTVIL 774
LSGG+++R+ A + D + D+P S +D+ A + V+ L+ KT+I
Sbjct: 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS-----VVQVLKGLAQKGKTIIC 221
Query: 775 VTHQ--VEFLSEVDRILVLEGGQITQSGNYQELL 806
HQ E D+I+++ G++ G+ + +
Sbjct: 222 TIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 6e-09
Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 20/205 (9%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ + R+ L I+ + +G G++G G+GKTT I + ++ P G +L
Sbjct: 1 LEVENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1276 IDG--VDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLK 1332
DG +DI R ++ +P+E L+ V L L K L+K + +
Sbjct: 59 FDGKPLDI------AARNRIGYLPEERGLYPKMKVIDQLVYLAQL------KGLKKEEAR 106
Query: 1333 TTISSLPNKLDSSVSDEG--ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAI 1390
I +L+ S E S G +Q ++ +L+LDE + +D +
Sbjct: 107 RRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVEL 166
Query: 1391 LQRIIR-QEFSNCTVITVAHRVPTV 1414
L+ +IR + TVI H++ V
Sbjct: 167 LKDVIRELARAGKTVILSTHQMELV 191
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 6e-09
Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 26/213 (12%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYA---ILGEIPKISGTVNLYG-------------S 659
+N+ I+ + A+ G+ G GKS+ L + +I KI G V + G +
Sbjct: 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80
Query: 660 IAYVSQTSWIQSGSIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714
+ V Q + SI +NI L+G +K + + C + + F+ ++
Sbjct: 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCL--QKVGLFEEVK-DKLK 137
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVIL 774
Q L LSGGQ+QR+ +ARA+ + L D+P SA+D ++ + E + ++I+
Sbjct: 138 QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEELLKELSHNLSMIM 196
Query: 775 VTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
VTH ++ V D G++ + G +E
Sbjct: 197 VTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229
|
Length = 246 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 33/208 (15%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+EL + R+ L + ++G V ++G +G GKTT + + L EP G I
Sbjct: 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNLD-PLGL--YSDDEIWK----ALE 1327
I G D+ + KD R ++++ Q L+ +V N+ L L DEI + E
Sbjct: 59 IGGRDVTDLPPKD-R-DIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAE 116
Query: 1328 KCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSAT 1387
Q++ + P +L S GQRQ LGR +++ ++ ++DE S
Sbjct: 117 LLQIEHLLDRKPKQL-----------SGGQRQRVALGRAIVREPKVFLMDEPL----SNL 161
Query: 1388 DAILQRIIRQEFSN------CTVITVAH 1409
DA L+ +R E T I V H
Sbjct: 162 DAKLRVQMRAELKRLQQRLGTTTIYVTH 189
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 7e-09
Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 39/222 (17%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM---GLKD 1288
VL ++ + G V ++GR+G GK+TL L L P+ G++ G + + K
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 1289 LRVKLSIIPQE-PTLF--RGSVRTNLD-PL----GLYSDDEIWKALEKCQLKTTISSLPN 1340
R + ++ Q+ + R +VR + PL L + + +A E + S+ +
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146
Query: 1341 KLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA-ILQRI--IRQ 1397
K + S GQ Q CL R L ++L+LDEA +++D A +++ + ++Q
Sbjct: 147 KRPPQL-------SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ 199
Query: 1398 EF-SNCTVIT--------VAHRVPTVIDSDMVMVLSYGKLLE 1430
+F + C IT R VMV+ G+++E
Sbjct: 200 QFGTACLFITHDLRLVERFCQR---------VMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 7e-09
Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 28/213 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK---ISGTVNLYG-SIAYVSQT-- 666
L+GVNL +K + A+ G G+GKS+L Y I+G PK G + G I +S
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG-HPKYEVTEGEILFDGEDILELSPDER 78
Query: 667 -------SW-----IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE-I 713
++ I + D + M+ R + I + + + L E
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAA--MNARRGARGILPEFIKELKEKAELLGLDEEF 136
Query: 714 GQRGLN--LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKT 771
+R +N SGG+K+R ++ + + + + + D+P S +D A + E + A E+
Sbjct: 137 LERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI-DALKIVAEGINALREEGR 195
Query: 772 -VILVTHQVEFLSEV--DRILVLEGGQITQSGN 801
V+++TH L + D++ VL G+I +SG+
Sbjct: 196 GVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGD 228
|
Length = 251 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 8e-09
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 31/183 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
G++ + + + V G G+GK++LL + G P ++G V L G Q
Sbjct: 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNG------GPLDFQRD 69
Query: 673 SIRDNILYGKPMDKARYDKAIKACALDKDIN-NF---DHGD------LTEIGQRGL---- 718
SI +LY + IK L N F DH D L +G G
Sbjct: 70 SIARGLLY------LGHAPGIKT-TLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRP 122
Query: 719 --NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILV 775
LS GQ++R+ LAR + + +++ D+P +A+D A F E + + V+L
Sbjct: 123 VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVA-RFAEAMAGHCARGGMVVLT 181
Query: 776 THQ 778
THQ
Sbjct: 182 THQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 8e-09
Identities = 47/197 (23%), Positives = 78/197 (39%), Gaps = 14/197 (7%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
+ G++ T + G + V G GSGKTTL+ L L P G +L++G + R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 1292 KLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLP-NKLDSSVSDE 1349
L + SV NL +SD+++ +AL + L P +L
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGL-NGFEDRPVAQL------- 126
Query: 1350 GENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAH 1409
SAGQ++ L R+LL + +LDE ++D A A + + ++ +
Sbjct: 127 ----SAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTT 182
Query: 1410 RVPTVIDSDMVMVLSYG 1426
+ L G
Sbjct: 183 HQDLGLSEAGARELDLG 199
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 1e-08
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 4/144 (2%)
Query: 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPL-VLKG 1235
+ Y+ S+E I P +VE+ +I+ + ++ Y + + K
Sbjct: 345 ITEYMKSLEATNSLYEIINRKP-LVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKD 403
Query: 1236 ITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI-DGVDICSMGLKDLRVKLS 1294
+ T +EG VG +G GK+T++ + RL +P G I+I D ++ + LK R K+
Sbjct: 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIG 463
Query: 1295 IIPQEPTLFRGSVRTNLDPLGLYS 1318
++ Q+P LF S++ N+ LYS
Sbjct: 464 VVSQDPLLFSNSIKNNIK-YSLYS 486
|
Length = 1466 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-08
Identities = 61/235 (25%), Positives = 97/235 (41%), Gaps = 43/235 (18%)
Query: 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG 1271
F+ R+ L + A GIT F G +GSGKT+LI+ + L P
Sbjct: 6 FRQRLGNFALDANFTLPAR----GITALF---------GPSGSGKTSLINMIAGLTRPDE 52
Query: 1272 GSILIDGVDICSMG----LKDLRVKLSIIPQEPTLFRG-SVRTNL----DPLGLYSDDEI 1322
G I ++G + L + ++ + Q+ LF +VR NL D++
Sbjct: 53 GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQL 112
Query: 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
L L + P L S G++Q +GR LL +L++DE AS
Sbjct: 113 VALLGIEHL---LDRYPGTL-----------SGGEKQRVAIGRALLTAPELLLMDEPLAS 158
Query: 1383 IDSATDA----ILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432
+D L+R +R E N ++ V+H + V+ +D V+VL GK+
Sbjct: 159 LDLPRKREILPYLER-LRDEI-NIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 27/170 (15%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM---GLKD 1288
+LKG+ G V +VG +GSGK+TL++ L L +P+ G + + G + +
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 1289 LRVK--------LSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKA---LEKCQLKTTISS 1337
LR + +IP L +V L+ G S D A LE L ++
Sbjct: 85 LRARHVGFVFQSFHLIPNLTAL--ENVALPLELRGESSADSRAGAKALLEAVGLGKRLTH 142
Query: 1338 LPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSAT 1387
P +L S G++Q L R R +L DE ++D AT
Sbjct: 143 YPAQL-----------SGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT 181
|
Length = 228 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-08
Identities = 56/246 (22%), Positives = 103/246 (41%), Gaps = 58/246 (23%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYG-----SIAYVSQ 665
L+ ++ I+ + + + G GAGKS L++ + G + SG + +Y YV +
Sbjct: 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI-IYHVALCEKCGYVER 74
Query: 666 TS--------------------WIQSGSIRDNI-------------LYG---------KP 683
S W S +R I LYG +
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134
Query: 684 MDKARY--DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741
+++ Y +A+ ++ H +T I + +LSGG+KQR+ LAR + + ++
Sbjct: 135 LEEIGYEGKEAVGRAVDLIEMVQLSH-RITHIAR---DLSGGEKQRVVLARQLAKEPFLF 190
Query: 742 LFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQS 799
L D+P +D TA + N A +++L +H E + ++ D+ + LE G+I +
Sbjct: 191 LADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEE 250
Query: 800 GNYQEL 805
G E+
Sbjct: 251 GTPDEV 256
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (138), Expect = 1e-08
Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 24/200 (12%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG-----GSILIDGVDICS--M 1284
+L+G++ + ++G +G GK+T + L R+ E G + +I +
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81
Query: 1285 GLKDLRVKLSIIPQEPTLFRGSVRTNL----DPLG----LYSDDEIWKALEKCQLKTTIS 1336
L LR ++S++ +P LF SV N+ +G L DD + AL+ L I
Sbjct: 82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK 141
Query: 1337 SLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIR 1396
+K+ S D S GQ+Q C+ R L + ++L++DE +D ++ +I+
Sbjct: 142 ---HKIHKSALD----LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQ 194
Query: 1397 QEF--SNCTVITVAHRVPTV 1414
S T++ V+H + V
Sbjct: 195 SLRLRSELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 1e-08
Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 38/202 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGE-IP-----------------KISG 652
++ VN DI A+ G G GKS+ L AI + + IP K +
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 653 TVNLYGSIAYVSQTSWIQSGSIRDNILYGKPM----DKARYD----KAIKACALDKDINN 704
V L I V Q SI DNI YG + DK + + K+++ AL ++++
Sbjct: 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD 174
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
+ + L LSGGQ+QR+ +AR + + +I L D+P SA+D A + E ++
Sbjct: 175 -------RLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKI--EDLI 225
Query: 765 AALEKK-TVILVTHQVEFLSEV 785
L T+++VTH ++ S V
Sbjct: 226 QELRGSYTIMIVTHNMQQASRV 247
|
Length = 286 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 38/203 (18%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
VL ++ G + ++G G+GK+TL+ + LV P G I ++ ++
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 1292 KLSIIPQ----EPTLFRGSVR-TNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSV 1346
++ +PQ + TL R L P G +D I AL++ Q I + KL
Sbjct: 68 RIGYVPQKLYLDTTLPLTVNRFLRLRP-GTKKED-ILPALKRVQAGHLIDAPMQKL---- 121
Query: 1347 SDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID-----SATDAILQRIIRQEFSN 1401
S G+ Q L R LL R ++LVLDE +D + D I Q +R+E +
Sbjct: 122 -------SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ--LRREL-D 171
Query: 1402 CTVITVAHRVPTVI-DSDMVMVL 1423
C V+ V+H + V+ +D V+ L
Sbjct: 172 CAVLMVSHDLHLVMAKTDEVLCL 194
|
Length = 251 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS-MGLKDLR 1290
L ++ ++G V ++G G+GKTTL+ L G I+ DG DI K +R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 1291 VKLSIIPQEPTLF-RGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDE 1349
++I+P+ +F R +V NL G +++ + ++ ++K P + +
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE----RIKWVYELFPRLHERRIQRA 135
Query: 1350 GENWSAGQRQLFCLGRVLLKRNRILVLDE 1378
G S G++Q+ +GR L+ + R+L+LDE
Sbjct: 136 G-TMSGGEQQMLAIGRALMSQPRLLLLDE 163
|
Length = 237 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 49/236 (20%), Positives = 109/236 (46%), Gaps = 14/236 (5%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG--- 1271
+I++ L + Y LK ++ + + ++G +G GK+T I L R+ +
Sbjct: 12 QIKVENLNLWYGEKQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCR 69
Query: 1272 --GSILIDGVDICSMGLK--DLRVKLSIIPQEPTLFRGSVRTNL--DPLGLYSDDEIWKA 1325
G + I+G DI + +LR + ++ Q+P F S+ N+ P ++ +
Sbjct: 70 IEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDG 129
Query: 1326 LEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDS 1385
+ + L++ ++L ++ + + S GQ+Q C+ R L + +I++ DE +++D
Sbjct: 130 VVENALRS--AALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP 187
Query: 1386 ATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440
+ A ++ +I + T++ V H + SD G+L+E+ + ++
Sbjct: 188 ISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243
|
Length = 258 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 55/235 (23%), Positives = 105/235 (44%), Gaps = 37/235 (15%)
Query: 1227 PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILID----GVDIC 1282
N + L I+ TF + ++G +GSGK+TL++ L++ G+I + G
Sbjct: 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95
Query: 1283 SMG------------LKDLRVKLSIIPQEP--TLFRGSVRTNLD----PLGLYSDDEIWK 1324
+ K+LR ++S++ Q P LF+ ++ ++ LG+ +
Sbjct: 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKL 155
Query: 1325 A---LEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381
A L K L + L+ S S GQ++ + +L + IL+ DE A
Sbjct: 156 AKFYLNKMGLDDSY------LERSPFG----LSGGQKRRVAIAGILAIQPEILIFDEPTA 205
Query: 1382 SIDSATDAILQRIIRQ-EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEP 1434
+D + + ++I + +N TV + H + V++ +D V+V+ GK+L+ P
Sbjct: 206 GLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTP 260
|
Length = 320 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-08
Identities = 51/224 (22%), Positives = 105/224 (46%), Gaps = 23/224 (10%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
+L+ ++ + G V+G TGSGK+TL+ +L E + G + +
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAER------------- 721
Query: 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDE----IWKALEKCQLKTTISSLPNKLDSSVS 1347
++ +PQ+ + +VR N+ L+ D+E + A+ QL+ ++ L L++ +
Sbjct: 722 SIAYVPQQAWIMNATVRGNI----LFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIG 777
Query: 1348 DEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSAT-DAILQRIIRQEFSNCTVIT 1406
++G N S GQ+ L R + + +LD+ +++D+ + +++ + T +
Sbjct: 778 EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVL 837
Query: 1407 VAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAE 1450
H+V V +D V+ L G++ + M T S ++ L AE
Sbjct: 838 ATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT-SLYATLAAE 880
|
Length = 1560 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 60/246 (24%), Positives = 109/246 (44%), Gaps = 51/246 (20%)
Query: 594 SVKIQEGNFSWDPELAIPT--LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
S+KI+ + L VN++I+ + + + G G+GKS+L+ + G + S
Sbjct: 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 652 GTVNLYG---------------SIAYVSQTSWIQ--SGSIRDNILYGKPMD--------K 686
G + + G + V Q Q +I +I +G P++ +
Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFG-PINLGLSEEEIE 120
Query: 687 ARYDKAIKACALD----KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742
R +A+ LD KD + F+ LSGGQK+R+ +A V + I +
Sbjct: 121 NRVKRAMNIVGLDYEDYKDKSPFE-------------LSGGQKRRVAIAGVVAMEPKILI 167
Query: 743 FDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSE-VDRILVLEGGQITQ 798
D+P + +D + N+ + L K+ T+ILV+H +E +++ DRI+V+ G+
Sbjct: 168 LDEPTAGLDPKGRDEILNK--IKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL 225
Query: 799 SGNYQE 804
G +E
Sbjct: 226 QGTPRE 231
|
Length = 287 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 47/221 (21%), Positives = 98/221 (44%), Gaps = 45/221 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660
+RGV+ ++ + + G GAGK++ + + + SG + G I
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI 75
Query: 661 AYVSQTSWIQSG-SIRDNI-----LYGKPMDKA--RYDKAIKACAL----DKDINNFDHG 708
V Q + + +N+ LYG P + R D+ + L D+ + +
Sbjct: 76 GIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTY--- 132
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
SGG ++R+++AR++ + ++ D+P +D T A ++ + L+
Sbjct: 133 ------------SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE--YIEKLK 178
Query: 769 KK---TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
++ T++L TH +E ++ DR+ +++ G+I G +EL
Sbjct: 179 EEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 20/179 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------I 660
++ + + + + G GAGK++LL + G + +G V G +
Sbjct: 18 FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQAL 77
Query: 661 AYVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
Y+ I++ + +N+ + + + I AL + L ++
Sbjct: 78 LYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWE-ALAQ----VGLAGLEDLPVG--Q 130
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LS GQ++R+ LAR + A +++ D+PF+A+D A L A + V+L THQ
Sbjct: 131 LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQ 189
|
Length = 209 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 2e-08
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779
LSGGQK+R+ +A + +I +FD+P + +D + + A KTV ++TH +
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM 236
Query: 780 EFLSEV-DRILVLEGGQITQSGNYQEL 805
E + EV D ++V++ G+I ++G E+
Sbjct: 237 EHVLEVADEVIVMDKGKILKTGTPYEI 263
|
Length = 320 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-08
Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 40/215 (18%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGS-----------IAYV 663
+NL IK + + G G GK+++L + G E P G + + G I V
Sbjct: 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT-EGQIFIDGEDVTHRSIQQRDICMV 83
Query: 664 SQT-SWIQSGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQ 715
Q+ + S+ +N+ YG M K R +A++ DL
Sbjct: 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV------------DLAGFED 131
Query: 716 RGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---T 771
R ++ +SGGQ+QR+ LARA+ + LFD+P S +DA+ ++ + + L+++ T
Sbjct: 132 RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK--IRELQQQFNIT 189
Query: 772 VILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+ VTH Q E + D ++V+ G+I Q G+ QEL
Sbjct: 190 SLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 26/195 (13%)
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAYVSQTSWIQ-SGSIRD 676
G GAGKS++ +LG I G + + G I V Q + ++R+
Sbjct: 37 GPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRE 96
Query: 677 NIL-YGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733
N+L +G+ M + I + + + + LSGG K+R+ LARA
Sbjct: 97 NLLVFGRYFGMSTREIEAVIPSLL---EFARLESKADVRVAL----LSGGMKRRLTLARA 149
Query: 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQVEFLSEV-DRILVL 791
+ ND + + D+P + +D H A L E + + L + KT++L TH +E + DR+ VL
Sbjct: 150 LINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVL 208
Query: 792 EGGQITQSGNYQELL 806
E G+ G L+
Sbjct: 209 ESGRKIAEGRPHALI 223
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 41/238 (17%)
Query: 1216 IELRQLKIRYRPNAPL--VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
++ L RY+ VLKG++ + +G V +VG +GSGK+TL+ L L P G
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 1274 ILIDGVDICSMG---LKDLR-VKLSIIPQ---------------EPTLFRGSVRTNLDPL 1314
+L +G + + LR KL I Q P L
Sbjct: 62 VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKE---- 117
Query: 1315 GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374
+ + ++ LEK L+ I+ P++L S G+RQ + R L+ + ++
Sbjct: 118 ---AKERAYEMLEKVGLEHRINHRPSEL-----------SGGERQRVAIARALVNQPSLV 163
Query: 1375 VLDEANASIDSATDAILQRIIRQ--EFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLE 1430
+ DE ++D+ I+ ++ + N + + V H + D V+ + G+L
Sbjct: 164 LADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 3e-08
Identities = 57/236 (24%), Positives = 97/236 (41%), Gaps = 40/236 (16%)
Query: 1223 IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC 1282
+ R +L ++ T G V ++G G+GK+TL+ AL + P G + ++G +
Sbjct: 8 LSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLA 67
Query: 1283 SMGLKDLRVKLSIIPQEPTL---FRGS--VRTNLDPLGLYS---DDEIWKALEKCQLKTT 1334
+L + +++PQ +L F V P GL D + AL + L
Sbjct: 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDL--- 124
Query: 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLL------KRNRILVLDEANASIDSATD 1388
+ L + + S G++Q L RVL R L+LDE +++D A
Sbjct: 125 -AHLAGRDYPQL-------SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQ 176
Query: 1389 AILQRIIRQ--EFSNCTVITVAHRVPTVID-------SDMVMVLSYGKLLEYDEPS 1435
+ R+ RQ VI V H D +D +++L G+L+ P+
Sbjct: 177 HHVLRLARQLAHERGLAVIVVLH------DLNLAARYADRIVLLHQGRLVADGTPA 226
|
Length = 258 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 29/194 (14%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-- 1289
VL I + G V + G +GSGKTTL++ + L GS+ + G ++ K+L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 1290 -RVKLSIIPQEPTLF-----RGSVRTNLDPL-GLYSDDEIWKA---LEKCQLKTTISSLP 1339
R + I Q L R +V+ L+ L + +A LE L + P
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139
Query: 1340 NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATD----AILQRII 1395
+ L S GQ+Q + R L+ R ++++ DE A++DS + ++Q++
Sbjct: 140 HNL-----------SGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLA 188
Query: 1396 RQEFSNCTVITVAH 1409
R++ CT++ V H
Sbjct: 189 REQ--GCTILIVTH 200
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 66/267 (24%), Positives = 120/267 (44%), Gaps = 44/267 (16%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFR---LVEPAG- 1271
I L+ + I Y +K + C G ++G +G GK+T++ +L R L+E
Sbjct: 14 ISLQNVTISY--GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 1272 -GSILIDGVDICSMGLK--DLRVKLSIIPQEPTLFRGSV--------RTNLDPLGLYSD- 1319
G +L DG D+ + ++R ++ ++ Q+P F S+ R N G D
Sbjct: 72 KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARIN----GYTGDM 127
Query: 1320 DEIWKALEKCQLKTTI-SSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDE 1378
DE+ +E+ K + +KL+ S G + S GQ+Q C+ R + ++++DE
Sbjct: 128 DEL---VERSLRKAAVWDECKDKLNES----GYSLSGGQQQRLCIARTIAIEPEVILMDE 180
Query: 1379 ANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVL--------SYGK-- 1427
+++D + ++ + + N T++ V H + + SDM S GK
Sbjct: 181 PCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240
Query: 1428 -LLEYDEPSKLMETNSSFSKLVAEYWS 1453
L+E++E K+ NS K +Y S
Sbjct: 241 YLVEFNETKKIF--NSPKQKATQDYIS 265
|
Length = 269 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 35/231 (15%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL---VEPA--GGSILIDGVDI--CSMG 1285
L + E T +G +G GK+T + L R+ ++ G I +DG DI +
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 1286 LKDLRVKLSIIPQEPTLFRGSVRTNL--DPL--GLYSD----DEI-WKALEKCQLKTTIS 1336
+ +LR ++ ++ Q+P F S+ N+ P GL DEI +L K +
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRK-------A 147
Query: 1337 SLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIR 1396
L ++ + + G S GQ+Q C+ R + ++++DE +++D A ++ +I
Sbjct: 148 GLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207
Query: 1397 QEFSNCTVITVAH------RVPTVIDSDMVMVLSYGKLLEYDEPSKLMETN 1441
+ N T++ V H RV S G L+E + K M TN
Sbjct: 208 ELRQNYTIVIVTHSMQQAARV-----SQRTAFFHLGNLVEVGDTEK-MFTN 252
|
Length = 267 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 12/172 (6%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I+ R ++ RY LV+ G++ G G++G G+GKTT + L L P GSI
Sbjct: 8 IDFRNVEKRY--GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTL---FRGSVRTNLDPLGLYSDDEIWKALEKCQLK 1332
+ G + S + R ++ ++PQ L F +VR NL G Y A
Sbjct: 66 LCGEPVPSRA-RHARQRVGVVPQFDNLDPDF--TVRENLLVFGRYFGLSAAAARALVPPL 122
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
+ L NK D+ V + S G ++ L R L+ +LVLDE +D
Sbjct: 123 LEFAKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (134), Expect = 4e-08
Identities = 58/240 (24%), Positives = 107/240 (44%), Gaps = 38/240 (15%)
Query: 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
++ ++++ F ++ E + L GV+ I + +++ G G+GKS+ I G +
Sbjct: 2 NKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE 61
Query: 652 GTV-------------NLYGSIAYVSQTSWIQ--SGSIRDNILYGK-----PMDK--ARY 689
G V NL I V Q Q ++ D++ +G P ++ R
Sbjct: 62 GKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV 121
Query: 690 DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
D+A+ A +N D + LSGGQKQR+ +A + +I + D+ S
Sbjct: 122 DEALLA------VNMLDFKT-----REPARLSGGQKQRVAVAGIIALRPEIIILDESTSM 170
Query: 750 VDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+D + V+ +++K TV+ +TH ++ + DRILV++ G+I + EL
Sbjct: 171 LDPTGRQEIMR--VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 40/222 (18%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + Y P L ++ +G + + G +G+GKTTL+ L+ + P+ G +
Sbjct: 2 IEFHNVSKAY-PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 1276 IDGVDICSMGLKD---LRVKLSIIPQEPTLFRGSVRTNLD----PL---GLYSDD---EI 1322
I G D+ + + LR ++ ++ Q+ L RT + PL G + +
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL--PDRTVYENVALPLEVRGKKEREIQRRV 118
Query: 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
AL + L+ + P +L S G++Q + R ++ +L+ DE +
Sbjct: 119 GAALRQVGLEHKADAFPEQL-----------SGGEQQRVAIARAIVNSPPLLLADEPTGN 167
Query: 1383 IDSATDAILQRIIR--QEFSN--CTVITVAHRVPTVIDSDMV 1420
+D +RI+ + + TVI H D +V
Sbjct: 168 LDPDLS---ERILDLLKRLNKRGTTVIVATH------DLSLV 200
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 55/209 (26%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI----DGVDICSMG-- 1285
VLK ++ T + G V + G +G+GK+TL+ +L+ P G IL+ VD+
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 1286 -LKDLRVK--------LSIIPQ--------EPTLFRGSVRTNLDPLGLYSDDEIWKALEK 1328
+ ++R K L +IP+ EP L RG R A +
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPRE--------------AARAR 128
Query: 1329 CQLKTTISSLPNKLDSSVSDEGENW-------SAGQRQLFCLGRVLLKRNRILVLDEANA 1381
+ ++P +L W S G++Q + R + IL+LDE A
Sbjct: 129 ARELLARLNIPERL----------WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTA 178
Query: 1382 SIDSATDAILQRIIRQ-EFSNCTVITVAH 1409
S+D+A ++ +I + + +I + H
Sbjct: 179 SLDAANRQVVVELIAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (135), Expect = 5e-08
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 12/203 (5%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL---VEPAG-- 1271
E+R Y VL + +G +G GK+T + L +L +E
Sbjct: 82 EIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHE 141
Query: 1272 GSILIDGVDICSMGLK--DLRVKLSIIPQEPTLFRGSVRTNL--DPLGLYSDDEIWKALE 1327
G I G + S + +LR ++ ++ Q+PT F S+ N+ P +D K LE
Sbjct: 142 GEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDR--KILE 199
Query: 1328 KCQLKTTISS-LPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
K K+ S+ L +++ + G S GQ+Q C+ R + +L++DE +++D
Sbjct: 200 KIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPI 259
Query: 1387 TDAILQRIIRQEFSNCTVITVAH 1409
A ++ +I + ++I V H
Sbjct: 260 ATAKIEELILELKKKYSIIIVTH 282
|
Length = 329 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (134), Expect = 5e-08
Identities = 51/235 (21%), Positives = 100/235 (42%), Gaps = 25/235 (10%)
Query: 595 VKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISG 652
+K ++ N+++ P A L ++L++K A+ G G+GKS+LL + G + G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 653 TVNLYGSIAYVSQTSWIQSGSIRDN--ILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
V + G I S + + +R +++ P + + +K A
Sbjct: 62 KVTV-GDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKA 120
Query: 711 TEIGQRGL---------------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTA 755
+I L LSGGQ +R+ +A + + ++ + D+P + +D
Sbjct: 121 EKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR 180
Query: 756 ATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN----YQEL 805
+ +TV+LVTH ++ +++ D + +LE G I G +QE+
Sbjct: 181 IEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEV 235
|
Length = 288 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 1248 VVGRTGSGKTTLISALFRLVEPAGGSILIDG-VDICSMGLKDLRVKLSIIP---QEPTLF 1303
++G G+GKTTL+ + P G +L DG D+ L + R+ + I Q+PT+F
Sbjct: 36 LIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDL--TKLPEHRIARAGIGRKFQKPTVF 93
Query: 1304 RG-SVRTNLDPLGLYSDDEIWKAL-------EKCQLKTTISSLPNKLDSSVSDEGENWSA 1355
+VR NL+ L L D ++ +L E+ ++ ++++ L S
Sbjct: 94 ENLTVRENLE-LALNRDKSVFASLFARLRAEERRRIDELLATI--GLGDERDRLAALLSH 150
Query: 1356 GQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVI 1415
GQ+Q +G +L + ++L+LDE A + A +++ +++ V H + V
Sbjct: 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVR 210
Query: 1416 D-SDMVMVLSYGKLL 1429
+ +D V VL G +L
Sbjct: 211 EIADKVTVLHEGSVL 225
|
Length = 249 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 55/213 (25%), Positives = 104/213 (48%), Gaps = 15/213 (7%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--VEP---AGGSILIDGVDICS--MG 1285
L ++ F ++G +GSGK+TL+ ++ R+ + P GSI+ +G +I S
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 1286 LKDLRVKLSIIPQEPTLFRGSVRTN----LDPLGLYSDDEIWKALEKCQLKTTISSLPNK 1341
DLR ++ ++ Q+P F S+ N L G+ + +A+EK LK +S+ ++
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEK-SLKG--ASIWDE 137
Query: 1342 LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSN 1401
+ + D S GQ+Q C+ RVL +I++LDE +++D + ++ + +
Sbjct: 138 VKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDD 197
Query: 1402 CTVITVAHRVPTVID-SDMVMVLSYGKLLEYDE 1433
T++ V + SD G L+EY++
Sbjct: 198 YTMLLVTRSMQQASRISDRTGFFLDGDLIEYND 230
|
Length = 252 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 6e-08
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 25/217 (11%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYGSIAYVSQTSW 668
I L V+L + Q V G+ GAGKS+L+ + L E P SG+V + G ++ S
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-SGSVIVDG--QDLTTLSN 74
Query: 669 IQSGSIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI-GQRGL---- 718
+ R I + + + LD + +TE+ GL
Sbjct: 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH 134
Query: 719 -----NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK--- 770
NLSGGQKQR+ +ARA+ ++ + L D+ SA+D T ++ ++ + ++
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILE--LLKEINRRLGL 192
Query: 771 TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T++L+TH+++ + + D + V+ G++ + G E+
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 6e-08
Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 37/239 (15%)
Query: 1216 IELRQLKIRYRPNAPL-------VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268
+E+R L +R +K ++ T EG + ++G GSGK+TL L ++E
Sbjct: 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 1269 PAGGSILIDGVDIC--SMGLKDLRVKLSIIPQEPTLF---RGSVRTNLD-PLGLYSD--- 1319
P G +LID + + R+++ I Q+P+ R + LD PL L +D
Sbjct: 65 PTSGELLIDDHPLHFGDYSYRSQRIRM--IFQDPSTSLNPRQRISQILDFPLRLNTDLEP 122
Query: 1320 ----DEIWKALEKCQLKTT-ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374
+I + L + L S P+ L GQ+Q L R L+ R +++
Sbjct: 123 EQREKQIIETLRQVGLLPDHASYYPHMLAP-----------GQKQRLGLARALILRPKVI 171
Query: 1375 VLDEANASID-SATDAILQRIIR-QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430
+ DEA AS+D S ++ ++ QE + I V + + SD V+V+ G+++E
Sbjct: 172 IADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE 230
|
Length = 267 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 6e-08
Identities = 63/258 (24%), Positives = 109/258 (42%), Gaps = 49/258 (18%)
Query: 584 RRISLQKSDRSV--KIQEGN-FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL 640
+++ L+ +D V I++G + W P + + GV L + + + V G G GKS+
Sbjct: 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFA 64
Query: 641 YAILGEIPKISGTVNLYG-SIAYVSQTSW------IQ--------SGSIRDNI------- 678
AI+G + G V G + + W IQ S + R I
Sbjct: 65 RAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEP 124
Query: 679 --LYGKPMDKARYDKAIKACA-----LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731
Y + + +KA L IN + H SGGQ QRI +A
Sbjct: 125 LRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPH-----------EFSGGQCQRIGIA 173
Query: 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQVEFLSEV-DR 787
RA+ + + + D+P SA+D A + N ++ L+++ ++I + H + + + DR
Sbjct: 174 RALILEPKLIICDEPVSALDVSIQAQVVN--LLQQLQREMGLSLIFIAHDLAVVKHISDR 231
Query: 788 ILVLEGGQITQSGNYQEL 805
+LV+ G + G Y E+
Sbjct: 232 VLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 6e-08
Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 32/227 (14%)
Query: 1230 PLVLK---GITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL 1286
P LK G+T EG +GVVG +G GK+T A+ LV+ G + G D+ M
Sbjct: 31 PKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKD 90
Query: 1287 KDLRVK---LSIIPQEPTLFRGSVRTNL-----DPLGLY----SDDEIWKALEKCQLKTT 1334
+ R + +I Q+P L + R + +PL Y S E+ ++ LK
Sbjct: 91 DEWRAVRSDIQMIFQDP-LASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVG 149
Query: 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA----I 1390
+ LPN ++ + +S GQ Q + R L+ ++++ DE +++D + A +
Sbjct: 150 L--LPNLINRYPHE----FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNL 203
Query: 1391 LQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLE---YDE 1433
LQ++ R+ ++I +AH + V SD V+V+ G +E YDE
Sbjct: 204 LQQLQRE--MGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDE 248
|
Length = 331 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 7e-08
Identities = 46/218 (21%), Positives = 93/218 (42%), Gaps = 34/218 (15%)
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVS 664
D + + + GV+ +K + + G GAGK++ L + G + +G + G V
Sbjct: 13 DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG-FDVVK 71
Query: 665 QTSWIQSG--------------SIRDNI-----LYGKPMDKARYDKAIKACALDKDINNF 705
+ + + + R+N+ LYG D + A L++ +
Sbjct: 72 EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGD------ELTA-RLEELADRL 124
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
+L + +R S G +Q++ +ARA+ +D + L D+P + +D L +
Sbjct: 125 GMEELLD--RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE--FIR 180
Query: 766 AL--EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSG 800
L K ++ TH ++ + + DR++VL G++ G
Sbjct: 181 QLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 7e-08
Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 43/207 (20%)
Query: 1229 APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD 1288
++ ++ G VG+ G G+G+T L ALF L PA G I +DG + +D
Sbjct: 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRD 71
Query: 1289 -LRVKLSIIPQEPT---LFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLD 1343
+R ++ +P++ L SV N+ +L + L
Sbjct: 72 AIRAGIAYVPEDRKREGLVLDLSVAENI-------------------------ALSSLL- 105
Query: 1344 SSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID-SATDAILQRIIRQEFSNC 1402
S G +Q L R L + R+L+LDE +D A I + I +
Sbjct: 106 ----------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK 155
Query: 1403 TVITVAHRVPTVID-SDMVMVLSYGKL 1428
V+ ++ + ++ D ++V+ G++
Sbjct: 156 AVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 7e-08
Identities = 53/225 (23%), Positives = 102/225 (45%), Gaps = 21/225 (9%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE--PA---GGSILIDGVDIC--SMG 1285
LK I E ++G +G GK+T I L R+VE P+ G IL +I S
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY-------SDDEIWKALEKCQLKTTISSL 1338
+++LR + ++ Q+P F S+ N+ Y D + + + L+ +++
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNV----TYGPKIHGIKDKKTLDEIVEKSLRG--AAI 153
Query: 1339 PNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQE 1398
++L + D S GQ+Q C+ R L ++++DE +++D + ++ ++++
Sbjct: 154 WDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL 213
Query: 1399 FSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMETNS 1442
+ ++I V H + SD G + EYD+ K+ S
Sbjct: 214 KKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNPS 258
|
Length = 271 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 8e-08
Identities = 53/242 (21%), Positives = 106/242 (43%), Gaps = 41/242 (16%)
Query: 594 SVKIQEGNFSWDPELAIPT--LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
S+K + ++ + P + L ++ +++ +A+ G G+GKS+L+ + S
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 652 GTVNLYG-----------------SIAYVSQTSWIQ--SGSIRDNILYGKPM------DK 686
GT+ + G ++ V Q Q ++ ++ +G P D+
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG-PKNFGFSEDE 120
Query: 687 ARYD--KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
A+ K +K L +D+ I + LSGGQ +R+ +A + + +I D
Sbjct: 121 AKEKALKWLKKVGLSEDL----------ISKSPFELSGGQMRRVAIAGVMAYEPEILCLD 170
Query: 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803
+P + +D + TVILVTH ++ ++E D +LVLE G++ + + +
Sbjct: 171 EPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230
Query: 804 EL 805
E+
Sbjct: 231 EI 232
|
Length = 287 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 8e-08
Identities = 47/217 (21%), Positives = 101/217 (46%), Gaps = 15/217 (6%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MG 1285
L I E ++G +G GK+T + L R+ + G +L+DG +I +
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 1286 LKDLRVKLSIIPQEPTLFRGSVRTNL--DPL--GLYSDDEIWKALEKCQLKTTISSLPNK 1341
+ +LR ++ ++ Q+P F S+ N+ P G+ E+ K +E K ++L ++
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKK---AALWDE 136
Query: 1342 LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSN 1401
+ + S GQ+Q C+ R + + ++++DE +++D + ++ ++ +
Sbjct: 137 VKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKE 196
Query: 1402 CTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
T++ V H + SD G L+E+++ K+
Sbjct: 197 YTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233
|
Length = 251 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 8e-08
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 11/82 (13%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-----KTVIL 774
LSGG++QR+ +ARA+ N + L D+P +D + E ++ L++ TVI+
Sbjct: 138 LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS-----ERILDLLKRLNKRGTTVIV 192
Query: 775 VTHQVEFLSEVD-RILVLEGGQ 795
TH + + V R+++L+ G+
Sbjct: 193 ATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 9e-08
Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 19/202 (9%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV- 1291
LKG+ T +G + ++G +G GK+TL++ + L +P G ++++G I G + V
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 1292 -KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTIS---SLPNKLDSSVS 1347
S++P +VR N+ + D + L K + + + +L L +
Sbjct: 61 QNYSLLPWL------TVRENI----ALAVDRVLPDLSKSERRAIVEEHIALVG-LTEAAD 109
Query: 1348 DEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ--EFSNCTVI 1405
S G +Q + R L R ++L+LDE ++D+ T LQ + Q E TV+
Sbjct: 110 KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVL 169
Query: 1406 TVAHRV-PTVIDSDMVMVLSYG 1426
V H V ++ SD V++L+ G
Sbjct: 170 MVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 9e-08
Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 35/198 (17%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGE-IP--KISGTV-----NLYGS------ 659
VNL+I+ A G G GKS++L + + E IP ++ G V +LYG
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 660 ----IAYVSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALD--KDINNFDHGDLTE 712
I V Q + + SIRDN++ G ++ R K + + N ++ E
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-----E 137
Query: 713 IGQR----GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
+ R G LSGGQ+QR+ +ARA+ + D+ L D+P SA+D +TL E ++ L+
Sbjct: 138 VKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP--ISTLAIEDLINELK 195
Query: 769 KK-TVILVTHQVEFLSEV 785
+ T+++VTH ++ + V
Sbjct: 196 QDYTIVIVTHNMQQAARV 213
|
Length = 258 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA------------GGSILIDGVD 1280
LK I + E ++G +G GK+T I L +++ G +IL VD
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 1281 ICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL--DPL--GLYSDDEIWKALEKCQLKTTIS 1336
+ +LR + ++ Q+ F S+ N+ P G + ++ + +EK LK
Sbjct: 88 LV-----ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEK-SLKDV-- 139
Query: 1337 SLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIR 1396
+L +++ + + + S GQ+Q C+ R L +L++DE +++D + ++ +I
Sbjct: 140 ALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL 199
Query: 1397 QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
+ T++ V H + SD G+L+E ++ +K+
Sbjct: 200 KLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241
|
Length = 259 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 55/243 (22%), Positives = 89/243 (36%), Gaps = 50/243 (20%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658
P L V+L I+ + + + G G GKS+L +LG GTV+ G
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84
Query: 659 ----SIAYVSQTS-----------WIQSGSIRDNILYGKPMDKARYDKAIKACALDKDIN 703
+ V Q S I +R + KAR + + L +
Sbjct: 85 AFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED- 143
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ LSGGQ QRI +ARA+ + + D+ S +D A +
Sbjct: 144 ---------ADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAV-----I 189
Query: 764 MAALEK------KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL-LAGTAFEQL 815
+ L K + +TH + + R+ V++ GQI + + +LL A L
Sbjct: 190 LELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAGRNL 249
Query: 816 VNA 818
+A
Sbjct: 250 QSA 252
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 59/239 (24%), Positives = 109/239 (45%), Gaps = 35/239 (14%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPK 649
VK+++ N + A+ + V++D A+ G G GKS++L +I L +
Sbjct: 5 VKLEQLNVHFGKNHAV---KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 650 ISGTVNLYGSIAYVSQTSWIQSGSIRDNI--LYGKPMD---KARYDKAIKACALDKDINN 704
++G + L + Y + SIR + ++ KP + YD I L+ +N
Sbjct: 62 VTGKILLDDTDIYDRGVDPV---SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNR 118
Query: 705 FDHGDLTEIGQR---------------GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749
+ ++ E + + LSGGQ+QR+ +AR + ++ L D+P SA
Sbjct: 119 SEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASA 178
Query: 750 VDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+D +TL E ++ L EK T+I+VTH ++ + V D G + + G +++
Sbjct: 179 LDP--ISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF 235
|
Length = 252 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 1e-07
Identities = 47/226 (20%), Positives = 90/226 (39%), Gaps = 34/226 (15%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS- 659
+ S + ++ V+ +++ + + + G G G+S L+ AI G SG + L G
Sbjct: 262 DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKD 321
Query: 660 -IAYVSQTSWIQSG-----------------SIRDNILYGKPMDKARYDK------AIKA 695
+ +S + G S+ +N++ G+ K AI+
Sbjct: 322 VLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRK 381
Query: 696 CALDKDINNFD---HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
A + I FD +LSGG +Q++ LAR + D+ + P +D
Sbjct: 382 FAREL-IEEFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDV 436
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQIT 797
+ + K V+L++ ++ + E+ DRI V+ G+I
Sbjct: 437 GAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-07
Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 38/215 (17%)
Query: 1239 TFS--EGTRVGVVGRTGSGKTTLISALFRLVEPA-GGSILIDG--VDICSMGLKDLRVKL 1293
+FS G +GV G G+G+T L+ ALF G++ I+G VDI + + +R +
Sbjct: 280 SFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP-AQAIRAGI 338
Query: 1294 SIIPQE-------PTLFRGSVRTNLDPLGLYS-----DDE-----IWKALEKCQLKTTIS 1336
+++P++ P L G T L L + D I A+++ ++KT
Sbjct: 339 AMVPEDRKRHGIVPILGVGKNIT-LSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASP 397
Query: 1337 SLP-NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRII 1395
LP +L S G +Q L ++LL R+L+LDE +D + ++I
Sbjct: 398 FLPIGRL-----------SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLI 446
Query: 1396 RQ-EFSNCTVITVAHRVPTVID-SDMVMVLSYGKL 1428
Q +I V+ + V+ SD V+V+ GKL
Sbjct: 447 NQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 47/226 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L+ VNL + + A+ G GAGKS+L+ + G GT+ +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 659 --SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
I Y + S I ++ +N+ G+ + K K C +N D ++
Sbjct: 81 GIGIIY-QELSVIDELTVLENLYIGRHLTK-------KVCG----VNIIDWREMRVRAAM 128
Query: 717 GL--------------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
L NLS KQ +++A+ + DA + + D+P S++ LF
Sbjct: 129 MLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF--L 186
Query: 763 VMAALEK--KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
+M L K ++ ++H++ + + DR V++ G SG ++
Sbjct: 187 IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
Length = 510 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 57/223 (25%), Positives = 99/223 (44%), Gaps = 44/223 (19%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------- 659
+ L+G++ + + A+ G GAGKS+L+ I G +P SGT+ + G+
Sbjct: 23 GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAK 82
Query: 660 -----IAYVSQTSWI-QSGSIRDNILYGKPMDKARYDK-----AIKACALDKDINNFDHG 708
I V Q + + S+++NIL+G P +A K A C LD D +
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSS----A 138
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
E+ R Q +++ R + D+ I + D+P +++ LF+ + L
Sbjct: 139 GSLEVADR---------QIVEILRGLMRDSRILILDEPTASLTPAETERLFSR--IRELL 187
Query: 769 KKTV--ILVTHQVEFLSEV----DRILVLEGGQITQSGNYQEL 805
+ V + ++H+ L E+ DRI V+ G I SG +L
Sbjct: 188 AQGVGIVFISHK---LPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 1e-07
Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 7/206 (3%)
Query: 1225 YRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM 1284
+ P+ + + TF E +G G+GKTT +S L L+ P G++L+ G DI
Sbjct: 938 FEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ET 996
Query: 1285 GLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLD 1343
L +R L + PQ LF +V ++ L+ ++ E+ QL+ L
Sbjct: 997 NLDAVRQSLGMCPQHNILFHHLTVAEHI----LFYAQLKGRSWEEAQLEMEAMLEDTGLH 1052
Query: 1344 SSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCT 1403
++E ++ S G ++ + + +++VLDE + +D + + ++ + S T
Sbjct: 1053 HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRT 1112
Query: 1404 VITVAHRVPTV-IDSDMVMVLSYGKL 1428
+I H + + D + ++S G+L
Sbjct: 1113 IIMSTHHMDEADLLGDRIAIISQGRL 1138
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 64/256 (25%), Positives = 103/256 (40%), Gaps = 65/256 (25%)
Query: 582 DVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLY 641
D+R +S + +R + F ++L + + A+ G G GK++LL
Sbjct: 9 DMRGVSFTRGNRCI------FD-----------NISLTVPRGKITAIMGPSGIGKTTLLR 51
Query: 642 AILGEIPKISGTVNLYG-SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDK 700
I G+I G + G +I +S++ LY + R ++ AL
Sbjct: 52 LIGGQIAPDHGEILFDGENIPAMSRSR-----------LYTV---RKRMSMLFQSGALFT 97
Query: 701 DINNFD--------HGDLTE-------------IGQRGL------NLSGGQKQRIQLARA 733
D+N FD H L +G RG LSGG +R LARA
Sbjct: 98 DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARA 157
Query: 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQV-EFLSEVDRIL 789
+ + D+ +FD+PF D T L +++ L T ++V+H V E LS D
Sbjct: 158 IALEPDLIMFDEPFVGQDPITMGVLVK--LISELNSALGVTCVVVSHDVPEVLSIADHAY 215
Query: 790 VLEGGQITQSGNYQEL 805
++ +I G+ Q L
Sbjct: 216 IVADKKIVAHGSAQAL 231
|
Length = 269 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAALEKKTVIL 774
++LSGG+ QR+ +A A+ +A YLFD+P + +D AA KKT ++
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEG--KKTALV 127
Query: 775 VTHQVEFLSEV-DRILVLEG 793
V H + L + DRI V EG
Sbjct: 128 VEHDLAVLDYLSDRIHVFEG 147
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 36/215 (16%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYV------ 663
+ L+G++ I+ + + G GAGK++ L + G + SG V + G + +
Sbjct: 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFL 93
Query: 664 ----------SQTSW----IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGD 709
+Q W I S + I Y + AR+ K + + D+ +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAI-YD--LPPARFKKRLDELSELLDL-----EE 145
Query: 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
L + R LS GQ+ R ++A A+ ++ +I D+P +D + N E+
Sbjct: 146 LLDTPVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRER 203
Query: 770 KTVILVT----HQVEFLSEVDRILVLEGGQITQSG 800
T +L+T +E L+ R+LV++ G++ G
Sbjct: 204 GTTVLLTSHYMKDIEALA--RRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 46/190 (24%), Positives = 92/190 (48%), Gaps = 14/190 (7%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFR---LVEPAG--GSILIDGVDICS--MG 1285
L I + + ++G +G GK+T + L R LVE G+++ +G +I S
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLD--PL--GLYSDDEIWKALEKCQLKTTISSLPNK 1341
+ +LR K+ ++ Q P F S+ N+ P G ++ + +E+ K S+L N+
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKK---SALWNE 139
Query: 1342 LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSN 1401
+ ++ + S GQ+Q C+ R L ++++DE +++D + ++ +I +
Sbjct: 140 VKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKES 199
Query: 1402 CTVITVAHRV 1411
T+I V H +
Sbjct: 200 YTIIIVTHNM 209
|
Length = 254 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-07
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 30/194 (15%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-- 1289
VLKGI+ G V +VG +GSGK+TL++ L L +P G+ + G D+ ++ L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 1290 --RVKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQ-------LKTTISSLP 1339
R I Q L + N++ +Y+ E + L + Q L+ + P
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP 142
Query: 1340 NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATD----AILQRII 1395
++L S GQ+Q + R L+ ++++ DE ++DS + AIL ++
Sbjct: 143 SQL-----------SGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLR 191
Query: 1396 RQEFSNCTVITVAH 1409
+ TVI V H
Sbjct: 192 DRGH---TVIIVTH 202
|
Length = 648 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVT 776
LSGGQKQR+ +A + + +FD+P + +D + N + L KK T+IL+T
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVN--TIKELNKKYGITIILIT 202
Query: 777 HQVEFLSEVDRILVLEGGQITQSGNYQEL 805
H +E E DRI+V++ G++ G +E+
Sbjct: 203 HYMEEAVEADRIIVMDSGKVVMEGTPKEI 231
|
Length = 280 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 51/250 (20%), Positives = 104/250 (41%), Gaps = 38/250 (15%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ + R+ VL G+ + + G +V ++G +GSGK+T++ L L G I
Sbjct: 1 VRFSDVTKRFGILT--VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 1276 IDGVDICSMG-------------LKDLRVKLSIIPQEPTLF------RGSVRTNLDPLGL 1316
++G + M L+ +R K+ ++ Q LF + LG+
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGM 118
Query: 1317 ---YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373
++ + L+ L +P +L S GQ+Q + R L R ++
Sbjct: 119 ARAEAEKRAMELLDMVGLADKADHMPAQL-----------SGGQQQRVAIARALAMRPKV 167
Query: 1374 LVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430
++ DE +++D + +IR+ S + T++ V H + + +D V G+++E
Sbjct: 168 MLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227
Query: 1431 YDEPSKLMET 1440
+P ++
Sbjct: 228 QGKPDEIFRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 35/195 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-----LGEIPKISGTVNLYGSIAYVSQTS 667
L+ V++ I A+ G G GKS+ + + L + +I G V++ G Y
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 668 WIQ---------------SGSIRDNILYGKPMDKAR-------YDKAIKACALDKDINNF 705
++ SI DN+ YG + A + A+++ AL + ++
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSD- 146
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
+ L+LSGGQ+QR+ +AR + I LFD+P SA+D + A + + +M
Sbjct: 147 ------RLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARI-EDLIMN 199
Query: 766 ALEKKTVILVTHQVE 780
+ T+++VTH ++
Sbjct: 200 LKKDYTIVIVTHNMQ 214
|
Length = 258 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 2e-07
Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 41/209 (19%)
Query: 1235 GITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM---------- 1284
G++ T + G V + G G+GKT+L+ L L P G +L G I
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78
Query: 1285 -----GLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLP 1339
G+K L+ E F + G D+ +W+AL + L
Sbjct: 79 LGHQPGIKTE---LT--ALENLRFYQRLH------GPGDDEALWEALAQVGLA------- 120
Query: 1340 NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF 1399
D V SAGQ++ L R+ L R + +LDE +ID A L+ ++ Q
Sbjct: 121 GFEDVPVR----QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA 176
Query: 1400 SN--CTVITVAHRVPTVIDSDMVMVLSYG 1426
++T +P + SD V L G
Sbjct: 177 EQGGMVILTTHQDLP--VASDKVRKLRLG 203
|
Length = 204 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 58/245 (23%), Positives = 98/245 (40%), Gaps = 39/245 (15%)
Query: 569 INAFLLDHELNNDDVR----RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLD----- 619
IN +L L ++VR I ++ P+L T L+
Sbjct: 306 INEYL-KGYLPEENVRFRPEEIEFEEKPPRDDKARDTLVEYPDLKK-TYGDFKLEVEEGE 363
Query: 620 IKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV-NLYGSIAYVSQT-SWIQSGSIRDN 677
I + I + G G GK++ + + G I G+ +L ++Y Q S G++ D
Sbjct: 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDL--KVSYKPQYISPDYDGTVEDL 421
Query: 678 ILYGKPMDKARYDKAIKACALDKDINN-----FDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
+ AI++ + DL E + LSGG+ QR+ +A
Sbjct: 422 LR-----------SAIRSAFGSSYFKTEIVKPLNLEDLLE--RPVDELSGGELQRVAIAA 468
Query: 733 AVYNDADIYLFDDPFSA---VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRI 788
A+ +AD+YL D+P SA V+ + +KT ++V H + + V DR+
Sbjct: 469 ALSREADLYLLDEP-SAYLDVEQRIIVAKVIRRFIEN-NEKTALVVDHDIYMIDYVSDRL 526
Query: 789 LVLEG 793
+V EG
Sbjct: 527 IVFEG 531
|
Length = 591 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-07
Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 56/222 (25%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
P + +NL ++ +++A+ G G GK++LL ++GE+ SGTV W +
Sbjct: 333 PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK------------WSE 380
Query: 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFD---------HGDLT---------- 711
+ NI Y D A YD + D+ FD +
Sbjct: 381 NA----NIGY-YAQDHA-YD-------FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLF 427
Query: 712 ---EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
+I + LSGG+K R+ + + ++ + D+P + +D + +L ALE
Sbjct: 428 SQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM-----ALE 482
Query: 769 K--KTVILVTHQVEFLSEV-DRILVLEGGQITQ-SGNYQELL 806
K T+I V+H EF+S + RI+ + + SG Y+E L
Sbjct: 483 KYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYL 524
|
Length = 530 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-07
Identities = 58/254 (22%), Positives = 112/254 (44%), Gaps = 60/254 (23%)
Query: 1218 LRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ L I + + ++ ++ + G + +VG +GSGK+ AL RL+E AGG +
Sbjct: 15 VENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQ 74
Query: 1276 IDG----------VDICSMGLKDLR----VKLSIIPQEPTLFRGSVRTNLDPL------- 1314
D +++ +R +++I QEP T+L+P+
Sbjct: 75 CDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPM-------TSLNPVFTVGEQI 127
Query: 1315 --------GLYSDDEIWKA---LEKCQL---KTTISSLPNKLDSSVSDEGENWSAGQRQL 1360
G ++ + +A L++ ++ +T +S P++L S G RQ
Sbjct: 128 AESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL-----------SGGMRQR 176
Query: 1361 FCLGRVLLKRNRILVLDEANASIDSATDA-ILQ--RIIRQEFSNCTVITVAHRVPTVID- 1416
+ L R +L+ DE ++D A ILQ +++++E S VI + H + V +
Sbjct: 177 VMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMS-MGVIFITHDMGVVAEI 235
Query: 1417 SDMVMVLSYGKLLE 1430
+D V+V+ G+ +E
Sbjct: 236 ADRVLVMYQGEAVE 249
|
Length = 623 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 2e-07
Identities = 39/181 (21%), Positives = 60/181 (33%), Gaps = 50/181 (27%)
Query: 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKP 683
+ I + G G+GK++L A+ E+ G V
Sbjct: 3 EVILIVGPPGSGKTTLARALARELGPPGGGV----------------------------- 33
Query: 684 MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLF 743
I D D L +G + + SG + R+ LA A D+ +
Sbjct: 34 ---------IYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLIL 84
Query: 744 DDPFSAVDAHTAATLFNECVMAAL------EKKTVILVTHQVEFLSE------VDRILVL 791
D+ S +DA A L + L + TVIL T+ + L DR +VL
Sbjct: 85 DEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVL 144
Query: 792 E 792
Sbjct: 145 L 145
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 52/249 (20%), Positives = 100/249 (40%), Gaps = 40/249 (16%)
Query: 1215 RIELRQLKIRYRPNAPLVLK---GITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG 1271
+I+++ + + P LK ++ ++G + ++G+TGSGKTT I L L+ P
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 1272 GSILIDGVDICSM------------------------GLKDLRVKLSIIPQ--EPTLFRG 1305
G+I D + +K++R ++ ++ Q E LF
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 1306 SVRTNL--DPLGLYSDDEIWKALEKCQLKTTISSLP-NKLDSSVSDEGENWSAGQRQLFC 1362
++ ++ P+ + E +A ++ + L + L S S GQ++
Sbjct: 122 TIEKDIIFGPVSMGVSKE--EAKKRAAKYIELVGLDESYLQRSPF----ELSGGQKRRVA 175
Query: 1363 LGRVLLKRNRILVLDEANASIDSA-TDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMV 1420
L +L LV DE A +D IL+ T+I V H + V++ +
Sbjct: 176 LAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235
Query: 1421 MVLSYGKLL 1429
+ GK++
Sbjct: 236 IFFKDGKII 244
|
Length = 305 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 44/196 (22%), Positives = 80/196 (40%), Gaps = 43/196 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659
L+G+N + + +A+ G+ GAGKS+LL + G + SG V + G
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 660 --IAYVSQTSWIQ--SGSIRDNILYGKPMD--------KARYDKAIKACALDKDINNFDH 707
+ V Q Q + + ++ +G P++ + R +A+ A +
Sbjct: 68 QRVGLVFQDPDDQLFAADVDQDVAFG-PLNLGLSEAEVERRVREALTAV----GASGLRE 122
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD---AHTAATLFNECVM 764
+ LSGG+K+R+ +A AV D+ L D+P + +D +
Sbjct: 123 -------RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175
Query: 765 AALEKKTVILVTHQVE 780
TV++ TH V+
Sbjct: 176 EG---MTVVISTHDVD 188
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 3e-07
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ELR + R+ L G++ + G ++G G+GK+TL+ L L +P G IL
Sbjct: 1 LELRGITKRFGGVK--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 1276 IDGVDICSMGLKD-LRVKLSIIPQ 1298
+DG ++ +D R ++++ Q
Sbjct: 59 VDGKEVSFASPRDARRAGIAMVYQ 82
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 65/248 (26%), Positives = 105/248 (42%), Gaps = 53/248 (21%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IEL + Y + L G++ EG ++G +G GKTTL+ + P G IL
Sbjct: 1 IELENVSKFY--GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNLD-PLGL--YSDDEIWK----ALE 1327
+DG DI L + ++ + Q LF +V N+ L L EI + AL+
Sbjct: 59 LDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALD 116
Query: 1328 KCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSAT 1387
QL+ + P++L S GQ+Q + R L+ ++L+LDE A
Sbjct: 117 LVQLEGYANRKPSQL-----------SGGQQQRVAIARALVNEPKVLLLDEPL----GAL 161
Query: 1388 DAILQRIIRQEFSN------CTVITVAHRVPTVID-------SDMVMVLSYGKLLE---- 1430
D L++ ++ E T + V H D SD + V++ GK+ +
Sbjct: 162 DLKLRKDMQLELKRLQKELGITFVFVTH------DQEEALTMSDRIAVMNKGKIQQIGTP 215
Query: 1431 ---YDEPS 1435
Y+EP+
Sbjct: 216 EEIYEEPA 223
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 57/239 (23%), Positives = 97/239 (40%), Gaps = 38/239 (15%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA 661
F + + TL V+ +K + +++ G G+GKS+ + I G + SG + + G
Sbjct: 12 FKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD-L 70
Query: 662 YVSQTSWIQSGSIRDNI--LYGKPMDKARYDKAIKACALDKDI------NNFDHGDLTEI 713
+ W IR I ++ P D ++ D+ H ++ E
Sbjct: 71 LTEENVW----DIRHKIGMVFQNP------DNQFVGATVEDDVAFGLENKGIPHEEMKER 120
Query: 714 GQRGLN--------------LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
L LSGGQKQR+ +A AV I + D+ S +D L
Sbjct: 121 VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180
Query: 760 NECVMAALEKK---TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+ + TVI +TH ++ ++ DR+LV++ GQ+ + +EL G QL
Sbjct: 181 K--TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDLLQL 237
|
Length = 279 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQ 778
LSGG K+R+ LARA+ ND D+ + D+P + +D A L E + + L + KT++L TH
Sbjct: 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKTILLTTH- 196
Query: 779 VEFLSEV----DRILVLEGGQITQSGNYQELL 806
F+ E DR+ V+E G+ G L+
Sbjct: 197 --FMEEAERLCDRLCVIEEGRKIAEGAPHALI 226
|
Length = 306 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LSGGQK+R+ LA + + D +FD+P + +D + + KT+ILVTH
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224
Query: 779 VE-FLSEVDRILVLEGGQITQSGNYQELL 806
++ L R + + G+I + G+ ++L
Sbjct: 225 LDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 41/221 (18%)
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYG-----------S 659
+NL +K + +A+ G G+GKS AILG +P + SG + L G
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 660 IAYVSQ---TSWIQSGSIRDNIL-----YGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
IA + Q T++ ++ ++ + GK +AR I + L
Sbjct: 64 IATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQAR--ALILEA--------LEAVGLP 113
Query: 712 EIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MA 765
+ + L LSGG QR+ +A A+ + + D+P + +D A + +
Sbjct: 114 D-PEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR 172
Query: 766 ALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
L ++L+TH + ++ + D + V++ G+I + G +E+
Sbjct: 173 QLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 52/212 (24%), Positives = 82/212 (38%), Gaps = 41/212 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYGS---------- 659
L VN I + + + G G GKS+LL ++G + +G + L
Sbjct: 18 LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77
Query: 660 -IAYVSQTSWI-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
I + Q + + S+ N+L+ P +K A N L G G
Sbjct: 78 QIGILFQDALLFPHLSVGQNLLFALPAT-------LKGNARRNAAN----AALERSGLDG 126
Query: 718 L------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----HTAATLFNECVMAAL 767
LSGGQ+ R+ L RA+ L D+PFS +D +F+E A +
Sbjct: 127 AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGI 186
Query: 768 EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799
+ VTH ++ + R V+E Q Q+
Sbjct: 187 ---PTVQVTHDLQDVPAGSR--VIEMAQWEQN 213
|
Length = 213 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 21/180 (11%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
R+ QL + Y V + +T +G ++G G GK+TL+ L RL+ PA G +
Sbjct: 7 RLRGEQLTLGY--GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV 64
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEPT----------LFRGSVRTNLDPLGLYSDDEIWK 1324
+DG I K++ ++ ++ Q T + RG R PL E +
Sbjct: 65 WLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARG--RYPHQPLFTRWRKEDEE 122
Query: 1325 ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
A+ K T I+ L ++ SV + S GQRQ + VL + I++LDE +D
Sbjct: 123 AVTKAMQATGITHLADQ---SV----DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 51/225 (22%)
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV----------NLY----GS 659
R V+ D+ + + + G G+GKS+LL + G + GT LY
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 660 IAYVSQTSWIQSGSIRDNILYG-------------KPMD-KARYDKAIKACALD----KD 701
+ +T W G + N G + M AR+ I+A A D +
Sbjct: 80 RRRLMRTEW---GFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVE 136
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
I D T I SGG +QR+Q+AR + + D+P +D A L +
Sbjct: 137 I------DPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD- 189
Query: 762 CVMAALEKK---TVILVTHQ---VEFLSEVDRILVLEGGQITQSG 800
++ L + VI+VTH L+ R+LV++ G++ +SG
Sbjct: 190 -LLRGLVRDLGLAVIIVTHDLGVARLLA--QRLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-07
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 51/229 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L V+ + + + + G GAGKS+ + I G +P SG+V + G +
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN------PK 71
Query: 673 SIRDNI------------------------LYGKP--MDKARYDKAIKACALDKDINNFD 706
++ NI +YG + K R ++ I+ L + +
Sbjct: 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-- 129
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+IGQ LS G +QR+ LA+A+ +D + + D+P + +D + + N V+
Sbjct: 130 -----KIGQ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRN--VIKN 178
Query: 767 LEK-KTVILVTH---QVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811
+ K KT+IL TH +VE + DR++++ G+I EL A
Sbjct: 179 IGKDKTIILSTHIMQEVEAI--CDRVIIINKGKIVADKKLDELSAANKK 225
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 23/219 (10%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E + L R+ + I+ T + + G++G G+GK+TL+ + ++ P G I+
Sbjct: 1 LETKNLSKRFGKQT--AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDP----LGLYSDDEIWKALEKCQL 1331
DG KDL S+I P + R NL LGL D I + L L
Sbjct: 59 FDGHP---WTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGL-PDSRIDEVLNIVDL 114
Query: 1332 KTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAIL 1391
T K + +S G +Q + LL ++L+LDE +D L
Sbjct: 115 TNT-----GKKKAK------QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQEL 163
Query: 1392 QRIIRQEFSN-CTVITVAHRVPTV-IDSDMVMVLSYGKL 1428
+ +IR TVI +H + V +D + ++S G L
Sbjct: 164 RELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 4e-07
Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 28/206 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSIAYVSQTSWI-- 669
L+GV ++ + + G GAGKS+LL I G E P +G + G + +
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS-AGKIWFSGHDITRLKNREVPF 76
Query: 670 ---QSGSI-RDNILYGKPMDKARYDKA----IKACALDKDINNFDHGDLTEIG------Q 715
Q G I +D+ L MD+ YD I A A DI L ++G
Sbjct: 77 LRRQIGMIFQDHHLL---MDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN 133
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD---AHTAATLFNECVMAALEKKTV 772
+ LSGG++QR+ +ARAV N + L D+P +D + LF E + TV
Sbjct: 134 FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGV---TV 190
Query: 773 ILVTHQVEFLSEVD-RILVLEGGQIT 797
++ TH + +S R+L L G +
Sbjct: 191 LMATHDIGLISRRSYRMLTLSDGHLH 216
|
Length = 222 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 5e-07
Identities = 60/218 (27%), Positives = 93/218 (42%), Gaps = 28/218 (12%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
VL I+ G V ++G +GSGKTTL+ + L G I G D+ + +D +V
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKV 76
Query: 1292 KLSIIPQEPTLFRG-SVRTNLD-----------PLGLYSDDEIWKALEKCQLKTTISSLP 1339
+ Q LFR +V N+ P ++ + LE QL P
Sbjct: 77 --GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP 134
Query: 1340 NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ-- 1397
+L S GQ+Q L R L +IL+LDE ++D+ L+R +RQ
Sbjct: 135 AQL-----------SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH 183
Query: 1398 EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEP 1434
E T + V H ++ +D V+V+S G + + P
Sbjct: 184 EELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTP 221
|
Length = 353 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 40/211 (18%)
Query: 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVN------LYGSIAYVSQ----------TS 667
Q +A+ G G+GKS+L + G I SG + +G ++ S+ TS
Sbjct: 40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTS 99
Query: 668 W--------IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
I +R N + + + ++ L D N+
Sbjct: 100 LNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH----------M 149
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVT 776
L+ GQKQR+ LARA+ I + D+ +++D + L N +M L++K + I VT
Sbjct: 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLIN--LMLELQEKQGISYIYVT 207
Query: 777 HQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ + + D++LV+ G++ + G+ ++L
Sbjct: 208 QHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 51/225 (22%)
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV----------NLYG-SIA- 661
R V+ D+ + + + G G+GK++LL I G + +GTV +LY S A
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 662 --YVSQTSWIQSGSIRDNILYG-------------KPMDK-ARYDKAIKACALD----KD 701
+ +T W G + N G + M AR+ I+A A D +
Sbjct: 83 RRRLLRTEW---GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVE 139
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
I DL I SGG +QR+Q+AR + + D+P +D A L +
Sbjct: 140 I------DLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD- 192
Query: 762 CVMAALEKK---TVILVTHQ---VEFLSEVDRILVLEGGQITQSG 800
++ L ++ V++VTH L+ DR++V++ GQ+ +SG
Sbjct: 193 -LLRGLVRELGLAVVIVTHDLAVARLLA--DRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 7e-07
Identities = 52/235 (22%), Positives = 87/235 (37%), Gaps = 35/235 (14%)
Query: 1199 AIVEDKRPPSSWPFKGR---IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSG 1255
+ E K P P + IEL+ + +R N +L ++ + G +VG G+G
Sbjct: 12 ELPEPKEPKKRHPIEINEPLIELKNVSVRR--NGKKILGDLSWQVNPGEHWAIVGPNGAG 69
Query: 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLK-DLRVK-------LSIIPQEPTLFRGSV 1307
KTTL+S L P+ G + + G +LR + L + R V
Sbjct: 70 KTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVV 129
Query: 1308 RTNL-DPLGLY---SDDEIWKA----LEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359
+ +G+Y E A LE K L S G+++
Sbjct: 130 LSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSL-----------SQGEQR 178
Query: 1360 LFCLGRVLLKRNRILVLDEANASID-SATDAILQRI--IRQEFSNCTVITVAHRV 1411
+ R L+K +L+LDE +D A + +L R+ + ++ V H
Sbjct: 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA 233
|
Length = 257 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 7e-07
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVE 780
SGG + RI LARA++ + D+ L D+P + +D H A L+ E + KT I+V+H E
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLH--AVLWLETYLLKW-PKTFIVVSHARE 402
Query: 781 FL-SEVDRILVLEGGQI-TQSGNY 802
FL + V IL L G ++ T G+Y
Sbjct: 403 FLNTVVTDILHLHGQKLVTYKGDY 426
|
Length = 718 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 7e-07
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 34/212 (16%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQ-----TSWI 669
V+L I + A+ G+ G GKS+LL + G +G + L G +++V
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMF 97
Query: 670 QS------GSIRDNILYGKPMDKARYDKAIKACALDKD-INNFDHGDLT-----EIGQRG 717
QS ++ NI +G DK L K I + + L E +R
Sbjct: 98 QSYALFPHMTVEQNIAFGLKQDK-----------LPKAEIASRVNEMLGLVHMQEFAKRK 146
Query: 718 LN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KTVIL 774
+ LSGGQ+QR+ LAR++ + L D+P A+D + E V+ LE+ T ++
Sbjct: 147 PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE-VVDILERVGVTCVM 205
Query: 775 VTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
VTH Q E ++ RI ++ G+ Q G +E+
Sbjct: 206 VTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
Length = 377 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 8e-07
Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 42/199 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLL------------YAILGEIPKISGTVNLYG-- 658
L+G++++I+ +A G G GKS+ L + GEI +I G N+Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI-RIDGR-NIYDKG 76
Query: 659 --------SIAYVSQTSWIQSGSIRDNILYGKPMD--------KARYDKAIKACALDKDI 702
++ V Q SI +N+ YG ++ + R ++ +K AL ++
Sbjct: 77 VQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV 136
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ ++ + LSGGQ+QR+ +ARA+ + L D+P SA+D + A + E
Sbjct: 137 KD-------KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV--EE 187
Query: 763 VMAALEKK-TVILVTHQVE 780
++ L+K T+++VTH ++
Sbjct: 188 LIHELKKDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 8e-07
Identities = 75/310 (24%), Positives = 139/310 (44%), Gaps = 38/310 (12%)
Query: 518 IFLGCALTGSA---PLNASTIF-TVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAF- 572
+ +GCAL +A ++A+ I VLA L G P+ M+ AL I+ Q +++ R+ F
Sbjct: 250 LLIGCALFAAAMFASIDAAAISAFVLALLYIKG-PLEMLVSALPILAQAQIACQRLADFG 308
Query: 573 ---------LLDHELNNDDVRRISLQKSDRSVKIQEGNFSW-DPELAIPTLRG-VNLDIK 621
L + D+V ++ KS S+++++ + + PE + G ++L I
Sbjct: 309 ERFNEPEPELELSD--ADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIA 366
Query: 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-IAYVSQTSWIQSGS------- 673
+ + G G GKS+L G G + L G+ ++ S+ + S
Sbjct: 367 QGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFH 426
Query: 674 IRDNILYGKPMDKARYDKA---IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730
+ D+++ + A D A ++ + + D G T LS GQ++R+ L
Sbjct: 427 LFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTT-----ALSTGQQKRLAL 481
Query: 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KTVILVTHQVEFLSEVDRI 788
A D I LFD+ ++A F E ++ L++ KT+I+++H ++ D+I
Sbjct: 482 ICAWLEDRPILLFDE-WAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQI 540
Query: 789 LVLEGGQITQ 798
+ L G I +
Sbjct: 541 IKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 8e-07
Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 52/228 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672
L VN+ I +A+ G G+GKS+LL + G + SGTV + G + +
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITAGKKNKKLK 81
Query: 673 SIRD--------------------NILYGKPMD--------KARYDKAIKACALDKDI-- 702
+R +I +G PM+ K + + I+ L +++
Sbjct: 82 PLRKKVGIVFQFPEHQLFEETVEKDICFG-PMNFGVSEEDAKQKAREMIELVGLPEELLA 140
Query: 703 -NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
+ F+ LSGGQ +R+ +A + + ++ + D+P + +D +
Sbjct: 141 RSPFE-------------LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME- 186
Query: 762 CVMAALEKK---TVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805
+ L K+ T +LVTH +E + D+I+V+ G + G +E+
Sbjct: 187 -MFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
Length = 290 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 61/243 (25%), Positives = 104/243 (42%), Gaps = 36/243 (14%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE++ L ++ VL GI G V ++G +GSGKTTL+ + L +P G+I
Sbjct: 4 IEVKNLVKKFHGQT--VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 1276 IDGVDI---CSMG-----LKDLRVKLSIIPQEPTLFRGSVRTNLD-----PL---GLYSD 1319
+ + I S+ ++ LR + + Q LF RT L+ P+ G +
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLF--PHRTVLENIIEGPVIVKGEPKE 119
Query: 1320 DEIWKA---LEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVL 1376
+ +A L K L +S P +L S GQ+Q + R L R +++
Sbjct: 120 EATARARELLAKVGLAGKETSYPRRL-----------SGGQQQRVAIARALAMRPEVILF 168
Query: 1377 DEANASIDSATDAILQRIIRQ-EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEP 1434
DE +++D + IRQ T++ V H + D +D + + G+++E
Sbjct: 169 DEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228
Query: 1435 SKL 1437
L
Sbjct: 229 KAL 231
|
Length = 250 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 33/218 (15%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
LK I+ +G RVG++G G+GK+TL+ + + +P G + + G + + + +
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-KVAPL----IEL 96
Query: 1292 KLSIIPQ----EPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTI--SSLPNKLDSS 1345
P+ E RG + LGL + EI + +++ I + L + +D
Sbjct: 97 GAGFDPELTGRENIYLRGLI------LGL-TRKEIDEKVDE-----IIEFAELGDFIDQP 144
Query: 1346 VSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA-TDAILQRIIRQEF--SNC 1402
V + +S+G IL+LDE A D+A + L+R+ E N
Sbjct: 145 V----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERL--NELVEKNK 198
Query: 1403 TVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
T++ V+H + + D + L +G++ P +++
Sbjct: 199 TIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
|
Length = 249 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 1e-06
Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 55/247 (22%)
Query: 605 DPELAIPTLRGVNLDIKWAQKI---------------AVCGSVGAGKSSLLYAILGEIPK 649
D + A P + VNL + +A K ++ G G+GK++ L + K
Sbjct: 14 DVDAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDK 73
Query: 650 ISG-------------------TVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYD 690
+SG + + + Q SI DN+L G K
Sbjct: 74 VSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR 133
Query: 691 KAIKACALDKDINNFDHGDLTEIG----------QRGLNLSGGQKQRIQLARAVYNDADI 740
K + A LTE+G LSGGQ+Q + LAR + + ++
Sbjct: 134 KEFRGVA---------QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEV 184
Query: 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQS 799
L D+P SA+D T + E + + ++ TVI+VTH + + + DR + G++ +
Sbjct: 185 LLLDEPTSALDPTTTEKI-EEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEE 243
Query: 800 GNYQELL 806
G ++L
Sbjct: 244 GPTEQLF 250
|
Length = 276 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 27/191 (14%)
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------IAYVSQTSWIQSGSIRD 676
G G GKS+LL + I SGT+ G ++Y +QT + ++ D
Sbjct: 40 GPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYD 99
Query: 677 NILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN-LSGGQKQRIQLARAVY 735
N+++ + + D A D+ F D I + + LSGG+KQRI L R +
Sbjct: 100 NLIFPWQIRNQQPDPA----IFLDDLERFALPD--TILTKNIAELSGGEKQRISLIRNLQ 153
Query: 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK--TVILVTHQVEFLSEVDRILVLEG 793
+ L D+ SA+D NE + + ++ V+ VTH + ++ D+++ L+
Sbjct: 154 FMPKVLLLDEITSALDESN-KHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ- 211
Query: 794 GQITQSGNYQE 804
+G QE
Sbjct: 212 ---PHAGEMQE 219
|
Length = 225 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 1e-06
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
V+ G++ T + G G++G G+GK+T+ + + P G I + GV + + + R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARA 114
Query: 1292 KLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISS------LPNKLDS 1344
++ ++PQ L +VR NL G Y + +++ I S L +K D+
Sbjct: 115 RIGVVPQFDNLDLEFTVRENLLVFGRYF------GMSTREIEAVIPSLLEFARLESKADA 168
Query: 1345 SVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
VSD S G ++ L R L+ ++L+LDE +D
Sbjct: 169 RVSD----LSGGMKRRLTLARALINDPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 20/209 (9%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I+++ L Y N ++GI+ ++G +G GK+T I L R+ E G +
Sbjct: 8 IKVKDLSFYY--NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKV 65
Query: 1276 IDGVDICSMGLKD-------LRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK 1328
VD + D LR ++ ++ Q P F S+ N+ G+ I L +
Sbjct: 66 EGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENV-AYGV----RISAKLPQ 120
Query: 1329 CQLKTTISS------LPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
L + S L ++ ++ S GQ+Q C+ R L + ++L++DE ++
Sbjct: 121 ADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSA 180
Query: 1383 IDSATDAILQRIIRQEFSNCTVITVAHRV 1411
+D ++ +I S T+ V H +
Sbjct: 181 LDPIATMKVEELIHSLRSELTIAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 50/215 (23%), Positives = 101/215 (46%), Gaps = 28/215 (13%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL------YGSIAYVSQTSWI 669
++ ++ Q +A+ G G+GKS+L + G I SG + + +G +Y SQ +
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRM 91
Query: 670 ----QSGSIRDNILYGKPMD-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN----- 719
S S+ + +D R + ++ +K I L ++G +
Sbjct: 92 IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIE----TLRQVGLLPDHASYYP 147
Query: 720 --LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVIL 774
L+ GQKQR+ LARA+ + + D+ +++D + L N +M L++K + I
Sbjct: 148 HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN--LMLELQEKQGISYIY 205
Query: 775 VTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLA 808
VT + + + D++LV+ G++ + G+ ++L +
Sbjct: 206 VTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 21/171 (12%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG-LKDLR 1290
VLKGI T G ++G G+GK+TL+ + +V P G++ I G + K +
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85
Query: 1291 VKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDE 1349
+ + ++PQEP LF SV+ N+ GL + ++K +++L +LD
Sbjct: 86 LGIYLVPQEPLLFPNLSVKENI-LFGLPK-----RQASMQKMKQLLAALGCQLDLDS--- 136
Query: 1350 GENWSAG-----QRQLFCLGRVLLKRNRILVLDEANASIDSA-TDAILQRI 1394
SAG RQ+ + R L++ +RIL+LDE AS+ A T+ + RI
Sbjct: 137 ----SAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI 183
|
Length = 510 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 23/165 (13%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA---GGSILIDGVDICSMGLKD 1288
+L + T ++G V ++G +G GK+TL+S + + G + ++ + L
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM--LPA 74
Query: 1289 LRVKLSIIPQEPTLF-RGSVRTNL------DPLGLYSDDEIWKALEKCQLKTTISSLPNK 1341
+ ++ I+ Q+ LF SV NL G + ALE+ L P
Sbjct: 75 AQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPAT 134
Query: 1342 LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
L S GQR L R LL + + L+LDE + +D A
Sbjct: 135 L-----------SGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 1e-06
Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 34/209 (16%)
Query: 611 PTL-RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS----IAYVSQ 665
P L + +N I +IA+ G G GKS++L I GE+ SGTV + S +A SQ
Sbjct: 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV--FRSAKVRMAVFSQ 579
Query: 666 TSWIQSGSIRDN-ILY------GKPMDKARYDKAIKACALDKDINNFD-HGDLTEIGQRG 717
+ + N +LY G P K R + +F G+L Q
Sbjct: 580 HH-VDGLDLSSNPLLYMMRCFPGVPEQKLR-----------AHLGSFGVTGNLAL--QPM 625
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
LSGGQK R+ A+ + I L D+P + +D L V L + V++V+H
Sbjct: 626 YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLV---LFQGGVLMVSH 682
Query: 778 QVEFLS-EVDRILVLEGGQITQ-SGNYQE 804
+S VD + V+ G++T G + +
Sbjct: 683 DEHLISGSVDELWVVSEGKVTPFHGTFHD 711
|
Length = 718 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 30/228 (13%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI 660
+F E +I ++ ++ +I + + G+ GAGKS+ L + G + SG V + G
Sbjct: 28 HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD 87
Query: 661 ------AYVSQTSWI---QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLT 711
Y+ + + D +D K I D+ D LT
Sbjct: 88 PFRRREEYLRSIGLVMGQKLQLWWDLPA----LDSLEVLKLIYEIPDDEFAERLD--FLT 141
Query: 712 EI-------GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN---- 760
EI LS GQ+ R +LA A+ + + D+P +D + A +
Sbjct: 142 EILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE 201
Query: 761 ECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLL 807
+ TV+L TH + ++ + DR+L+++ GQ+ G +L
Sbjct: 202 YNEE---RQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246
|
Length = 325 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 39/221 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV---------------NLY 657
L+G+N++IK + A+ G GAGKS+L + G + SG + L
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 658 GSIAYVSQTSWIQ--SGSIRDNILYGK-----PMDKA--RYDKAIKACALDKDINNFDHG 708
S+ V Q Q S S+ ++ +G P D+ R D A+K ++ + H
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHC 141
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
LS GQK+R+ +A + + + + D+P + +D + + + ++ +
Sbjct: 142 -----------LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM-KLLVEMQK 189
Query: 769 KK--TVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELL 806
+ T+I+ TH ++ + D + V++ G++ GN +E+
Sbjct: 190 ELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
|
Length = 283 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-06
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI- 1274
IEL L Y L+LK I+ T + G R+G+VGR G+GK+TL+ + +EP G +
Sbjct: 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
Query: 1275 LIDGVDIC-----SMGLKDLRVKLSII 1296
V I S G K +R+ L+ +
Sbjct: 59 WGSTVKIGYFEQLSGGEK-MRLALAKL 84
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 35/243 (14%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFR---LVEPA-- 1270
+E+R L + Y L I+ + +G +G GK+TL+ R LV+
Sbjct: 26 LEVRNLNLFY--GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI 83
Query: 1271 GGSILIDGVDIC--SMGLKDLRVKLSIIPQEPTLFRGSVRTN----LDPLGLYS----DD 1320
G I +DG +I + + +LR ++ ++ Q P F S+ N L G+ + D+
Sbjct: 84 EGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDE 143
Query: 1321 EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEAN 1380
+ ++L ++L +++ + + S GQ+Q + R + +L+LDE
Sbjct: 144 AVERSLRG-------AALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT 196
Query: 1381 ASIDSATDAILQRIIRQEFSNCTVITVAH------RVPTVIDSDMVMVLSYGKLLEYDEP 1434
+++D + ++ +I + S T++ V H RV SD + GKL+EY +
Sbjct: 197 SALDPISTLKIEELITELKSKYTIVIVTHNMQQAARV-----SDYTAFMYMGKLVEYGDT 251
Query: 1435 SKL 1437
L
Sbjct: 252 DTL 254
|
Length = 272 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 49/215 (22%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 1241 SEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQE- 1299
+G +G++G G+GKTTL+ A+ L+ PA G++ + G + +PQ
Sbjct: 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAG-----ASPGKGWRHIGYVPQRH 58
Query: 1300 ------PTLFRGSV---RTNLDPLGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSV 1346
P +V RT +G D + A+ + ++ L ++
Sbjct: 59 EFAWDFPISVAHTVMSGRTGH--IGWLRRPCVAD--FAAVRDALRRVGLTELADR----- 109
Query: 1347 SDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNC--TV 1404
GE S GQRQ + R L R +L+LDE +D T +L + E + +
Sbjct: 110 -PVGE-LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF-IELAGAGTAI 166
Query: 1405 ITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME 1439
+ H + + + +VL G+++ P +L +
Sbjct: 167 LMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 56/221 (25%), Positives = 95/221 (42%), Gaps = 39/221 (17%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLY----------------AILGEIPKISG----TVN 655
+++DI+ A+ G G GKS+ L IL E I VN
Sbjct: 40 ISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99
Query: 656 LYGSIAYVSQTSWIQSGSIRDNIL----YGKPMDKARYDKAIK----ACALDKDINNFDH 707
L I V Q SI +NI Y K+ D+ ++ AL ++ + H
Sbjct: 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLH 159
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
L+LSGGQ+QR+ +AR + + L D+P SA+D + A + E ++ L
Sbjct: 160 -------SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKI--EELITEL 210
Query: 768 EKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+++ ++I+VTH ++ V DR G + + +++
Sbjct: 211 KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251
|
Length = 268 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-06
Identities = 48/204 (23%), Positives = 98/204 (48%), Gaps = 19/204 (9%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
P + +N+ Q A G GAGK++ L + G +P SGTV + G + + Q
Sbjct: 944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQ 1003
Query: 671 S-------------GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
S ++ ++IL+ + +++A L+ + D G + +
Sbjct: 1004 SLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEA----QLEMEAMLEDTGLHHKRNEEA 1059
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
+LSGG ++++ +A A DA + + D+P S VD ++ +++ + ++ +T+I+ TH
Sbjct: 1060 QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIW-DLLLKYRSGRTIIMSTH 1118
Query: 778 QVEFLSEV-DRILVLEGGQITQSG 800
++ + DRI ++ G++ SG
Sbjct: 1119 HMDEADLLGDRIAIISQGRLYCSG 1142
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 52/243 (21%)
Query: 1236 ITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295
++ T +G ++G +G GK+TL+ L +P G I++DGVD+ + + +++
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV--PPYQRPINM 95
Query: 1296 IPQEPTLF-RGSVRTNLDPLGLYSD--------DEIWKALEKCQLKTTISSLPNKLDSSV 1346
+ Q LF +V N+ GL D + + L ++ P++L
Sbjct: 96 MFQSYALFPHMTVEQNI-AFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQL---- 150
Query: 1347 SDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID---------SATDAILQRIIRQ 1397
S GQRQ L R L KR ++L+LDE ++D D IL+R+
Sbjct: 151 -------SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVD-ILERV--- 199
Query: 1398 EFSNCTVITVAHRVPTVIDSDMVM-----VLSYGKLLEYDEPSKLME-TNSSFSKLVAEY 1451
T + V H + M M +++ GK ++ EP ++ E + +S AE+
Sbjct: 200 ---GVTCVMVTHDQ----EEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS---AEF 249
Query: 1452 WSS 1454
S
Sbjct: 250 IGS 252
|
Length = 377 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-06
Identities = 49/206 (23%), Positives = 82/206 (39%), Gaps = 21/206 (10%)
Query: 1182 ISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFS 1241
++ ++ + P + + W +ELR + Y + + I T
Sbjct: 294 VAFNKLNKLALAPYKAE--FPRPQAFPDWQ---TLELRNVTFAY-QDNGFSVGPINLTIK 347
Query: 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301
G + ++G GSGK+TL L L +P G IL+DG + + +D R S + +
Sbjct: 348 RGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFH 407
Query: 1302 LFRGSVRTNLDPLGLYSDDEI---WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358
LF + L P G ++ + W K K + D +S+ S GQ+
Sbjct: 408 LFD---QL-LGPEGKPANPALVEKWLERLKMAHKLELE------DGRISN--LKLSKGQK 455
Query: 1359 QLFCLGRVLLKRNRILVLDEANASID 1384
+ L L + IL+LDE A D
Sbjct: 456 KRLALLLALAEERDILLLDEWAADQD 481
|
Length = 547 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 56/253 (22%), Positives = 106/253 (41%), Gaps = 24/253 (9%)
Query: 1212 FKGRIELRQLKIRYRPNAPLVLKGI---TCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268
F I L + Y P K + + TF + V+G TGSGK+T+I L+
Sbjct: 3 FSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62
Query: 1269 PAGGSILIDGVDICS-----MGLKDLRVKLSIIPQEP--TLFRGSVRTNL--DPLGLYSD 1319
G ++ I + +K LR ++ ++ Q P LF+ ++ ++ P+ L +
Sbjct: 63 SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGEN 122
Query: 1320 DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEA 1379
+ +A +K + LP E S GQ++ L ++ LVLDE
Sbjct: 123 KQ--EAYKKVPELLKLVQLPEDYVKRSPFE---LSGGQKRRVALAGIIAMDGNTLVLDEP 177
Query: 1380 NASIDSATDA----ILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEP 1434
+D + + +R+ ++ +I V H + V+ +D V+V+ GK++ P
Sbjct: 178 TGGLDPKGEEDFINLFERLNKEYKKR--IIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235
Query: 1435 SKLMETNSSFSKL 1447
++ +K+
Sbjct: 236 FEIFSNQELLTKI 248
|
Length = 289 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 3e-06
Identities = 48/218 (22%), Positives = 94/218 (43%), Gaps = 19/218 (8%)
Query: 1205 RPPSSWPFKGRIELRQLKIRYRPNAPLV-LKGITCTFSEGTRVGVVGRTGSGKTTLISAL 1263
+PPS+ G + L + + + +K ++ G VG+ G G+G++ L+ A+
Sbjct: 248 KPPST---PGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAI 304
Query: 1264 FRLVEPAGGSILIDGVDICSMGLKDLRVKLSI--IPQEPTLFRG-----SVRTNLDPLGL 1316
L +PA G IL++G D+ R +L + +P++ G S+ NL LG
Sbjct: 305 SGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDR-HGHGLVLDLSLAENL-VLGR 362
Query: 1317 YSDDEI--WKALEKCQLKTTISSLPNKLD---SSVSDEGENWSAGQRQLFCLGRVLLKRN 1371
+ L++ ++ L + D S + S G +Q L R L +R
Sbjct: 363 HDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRP 422
Query: 1372 RILVLDEANASID-SATDAILQRIIRQEFSNCTVITVA 1408
+L+ + +D A + I +R++ + V+ ++
Sbjct: 423 DLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLIS 460
|
Length = 501 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 24/185 (12%)
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQT-SWIQSGSIRD 676
I ++ I + G G GK++ + + G + G + + +++Y Q G++RD
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD 80
Query: 677 NILYGKPMDK---ARYDKAI-KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
+L D + I K +++ ++ + LSGG+ QR+ +A
Sbjct: 81 -LLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAA 128
Query: 733 AVYNDADIYLFDDPFSAVDAHT---AATLFNECVMAALEKKTVILVTHQVEFLSEV-DRI 788
+ DADIYL D+P + +D A+ + +KT +V H + + + DR+
Sbjct: 129 CLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN--EKTAFVVEHDIIMIDYLADRL 186
Query: 789 LVLEG 793
+V EG
Sbjct: 187 IVFEG 191
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 63/233 (27%)
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQT-------- 666
G++L ++ Q + + G G+GKS+L A+L IP G I + Q
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-------QGEIRFDGQDIDGLSRKE 357
Query: 667 -----SWIQ--------SGSIRDNI---------LYGKPMDKARYDK----AIKACALDK 700
+Q S S R + ++ + A D+ A++ LD
Sbjct: 358 MRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP 417
Query: 701 DI-NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLF 759
N + H SGGQ+QRI +ARA+ ++ L D+P SA+D A +
Sbjct: 418 ATRNRYPH-----------EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL 466
Query: 760 NECVMAALEKK---TVILVTHQ---VEFLSEVDRILVLEGGQITQSGNYQELL 806
+ ++ L++K + + ++H V L R++V+ G+I + G + +
Sbjct: 467 D--LLRDLQQKHGLSYLFISHDLAVVRALC--HRVIVMRDGKIVEQGPTEAVF 515
|
Length = 534 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 56/218 (25%), Positives = 85/218 (38%), Gaps = 36/218 (16%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISAL--FRLVEPAGGSILIDGVDICSMGLKDL 1289
+LKG+ T EG ++G GSGK+TL + E G IL DG DI + D
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILEL-SPDE 77
Query: 1290 RVKLSIIP--QEPTLFRG-----------SVRTNLDPLGLYSDDEIWKALEKCQLKTTIS 1336
R + I Q P G + R + E+ + E L
Sbjct: 78 RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLD---- 133
Query: 1337 SLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRII- 1395
L+ V E +S G+++ + ++LL ++ +LDE DS D +I+
Sbjct: 134 --EEFLERYV---NEGFSGGEKKRNEILQLLLLEPKLAILDE----PDSGLDIDALKIVA 184
Query: 1396 ------RQEFSNCTVITVAHRVPTVIDSDMVMVLSYGK 1427
R+E +IT R+ I D V VL G+
Sbjct: 185 EGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGR 222
|
Length = 251 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 4e-06
Identities = 59/267 (22%), Positives = 107/267 (40%), Gaps = 64/267 (23%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--VEPAGGSIL-------------- 1275
VLK I+ T EG +G++GR+G+GK+ L+ L + EP G I+
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 1276 -------------------IDGVDICSMGLKDLRVKLSIIPQEPTLFRG------SVRTN 1310
+D ++ + +R +++I+ Q G +V
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134
Query: 1311 LDPLGLYSDDEIWKA---LEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367
L+ +G + + +A +E QL I+ + L S G++Q L R L
Sbjct: 135 LEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDL-----------SGGEKQRVVLARQL 183
Query: 1368 LKRNRILVLDEANASIDSATDAILQRIIRQ--EFSNCTVITVAHRVPTVID--SDMVMVL 1423
K + + DE ++D T ++ + + + S +++ +H P VI+ SD + L
Sbjct: 184 AKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH-WPEVIEDLSDKAIWL 242
Query: 1424 SYGKLLEYDEP----SKLMETNSSFSK 1446
G++ E P + ME S K
Sbjct: 243 ENGEIKEEGTPDEVVAVFMEGVSEVEK 269
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 4e-06
Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 59/253 (23%)
Query: 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL-----VE 1268
+ +R L + + +KGI+ G + +VG +GSGK+ ++ L
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA 66
Query: 1269 PAGGSILIDGVDICSMGLKDLRV----KLSIIPQEPTLFRGSVRTNLDPL---------- 1314
GSIL DG D+ + + LR K+ +I QEP T+L+PL
Sbjct: 67 HPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPM-------TSLNPLHTIGKQLAEV 119
Query: 1315 -----GLYSDDEIWKA-----LEKCQL---KTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361
GL +A LE + + + + P++L S GQRQ
Sbjct: 120 LRLHRGL--SRAAARARALELLELVGIPEPEKRLDAYPHEL-----------SGGQRQRV 166
Query: 1362 CLGRVLLKRNRILVLDEANASIDSATDA-ILQ--RIIRQEFSNCTVITVAHRVPTVID-S 1417
+ L +L+ DE ++D A IL + ++ E ++ + H + V +
Sbjct: 167 MIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKFA 225
Query: 1418 DMVMVLSYGKLLE 1430
D V V+ +G+++E
Sbjct: 226 DRVYVMQHGEIVE 238
|
Length = 534 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 4e-06
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 26/157 (16%)
Query: 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG--VDICSMG-LKDLRVKLSIIPQE 1299
G + +VG +GSGK+T AL RLVE GG I+ +G +D S G L+ LR + I Q+
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 1300 PTLF---RGSVRTN-LDPL---GLYSDDEIWKA----LEKCQLKTTIS-SLPNKLDSSVS 1347
P R +V + ++PL GL LE+ L + P++
Sbjct: 410 PYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHE------ 463
Query: 1348 DEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
+S GQRQ C+ R L ++++ DEA +++D
Sbjct: 464 -----FSGGQRQRICIARALALNPKVIIADEAVSALD 495
|
Length = 623 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 5e-06
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 35/222 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--LGEI----PKISGTVNLYGSIAY---- 662
L+ + + I + G G+GKS+LL + L EI K+ G V +G +
Sbjct: 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85
Query: 663 ----------VSQTSWIQSGSIRDNILYGKPM------DKARYDKAIKACALDKDINNFD 706
Q + SI DNI Y P+ +K K ++ C +
Sbjct: 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAY--PLKSHGIKEKREIKKIVEECLRKVGLWKEV 143
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+ L + LSGGQ+QR+ +ARA+ + L D+P S +D + + E ++
Sbjct: 144 YDRLNSPASQ---LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI--EKLITE 198
Query: 767 LEKK-TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
L+ + +++V+H + ++ V D + L G++ + G+ E+
Sbjct: 199 LKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 5e-06
Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 32/230 (13%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD--- 1288
VLKG++ + G + ++G +GSGK+T + + L +P+ GSI+++G I + KD
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 1289 ----------LRVKLSIIPQEPTLFRGSVRTNLD-----PLGLYSDDEIWKALEKCQLKT 1333
LR +L+++ Q L+ S T L+ P+ + L K + +
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLW--SHMTVLENVMEAPIQVL-------GLSKQEARE 130
Query: 1334 TISSLPNKLDSSVSDEGE---NWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAI 1390
K+ +G+ + S GQ+Q + R L +L+ DE +++D
Sbjct: 131 RAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190
Query: 1391 LQRIIRQ-EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438
+ RI++Q T++ V H + S V+ L GK+ E P +L
Sbjct: 191 VLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
|
Length = 257 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 5e-06
Identities = 49/211 (23%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNL--------------YGSIA 661
V+L + + + + G GAGK++ Y ++G +P+ +G + + I
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81
Query: 662 YVSQTSWI-QSGSIRDNILYGKPM--DKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
Y+ Q + I + S+ DN++ + D + + +A L ++ + D +GQ
Sbjct: 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD--SMGQ--- 136
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK--TVILVT 776
+LSGG+++R+++ARA+ + L D+PF+ VD + + + ++ L V++
Sbjct: 137 SLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI--KRIIEHLRDSGLGVLITD 194
Query: 777 HQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
H V E L+ +R ++ G + G E+L
Sbjct: 195 HNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225
|
Length = 241 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-06
Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 42/233 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
+ VN + + + A+ G G+GKS+L+ I + +GTV +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 659 ---SIAYVSQ--TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
I V Q S + ++ I++G K D+ +K A L ++
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDE-VKNYAHRL---------LMDL 132
Query: 714 G-------QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA---HTAATLFNECV 763
G Q +SGGQ ++I + + + DI + D+P + +D L
Sbjct: 133 GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS-- 190
Query: 764 MAALEKKTVILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+ E KT+ILV+H + E D ++V++ G I + +EL
Sbjct: 191 LQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADW 243
|
Length = 286 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 40/222 (18%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYGS-------- 659
L+GVNL +K + A+ G G+GKS+L I G P SGT+ G
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPD 72
Query: 660 ----------------IAYVSQTSWIQSGS-IRDNILYGKPMDKARYDKAIKACALDKDI 702
I VS +++S R + +P+D + K +KA +
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM 132
Query: 703 NNFDHGDLTEIGQRGLN--LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
+ E R +N SGG+K+R ++ + + + + D+ S +D +
Sbjct: 133 DE-------EFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 761 ECVMAALEKKTVILVTHQVEFLSEV--DRILVLEGGQITQSG 800
++ +++TH L+ + D + VL G+I +SG
Sbjct: 186 GINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 27/196 (13%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDI------CSMG 1285
L IT EG + ++G +G+GK++L+ L L P G++ I G
Sbjct: 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 1286 LKDLRVKLSIIPQEPTLF-RGSVRTNL-----DPLGLYSDDEIWKA---LEKCQLKTTIS 1336
++DLR + ++ Q+ L+ +V+ NL LGL D + +A L++ +LK
Sbjct: 77 IRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYAD 136
Query: 1337 SLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIR 1396
P L S GQ+Q + R L+ ++L+ DE A++D A + II+
Sbjct: 137 RYPLHL-----------SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIK 185
Query: 1397 Q-EFSNCTVITVAHRV 1411
+ + T + V H V
Sbjct: 186 ELAETGITQVIVTHEV 201
|
Length = 242 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 6e-06
Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 52/246 (21%)
Query: 1231 LVLKGITCTFS-------------EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILID 1277
+VLK IT F +GT V ++G +G GKTT++ + L +P G I ID
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66
Query: 1278 GVDIC--SMGLKDLRVKLSIIPQEPTLF-RGSVRTN----LDPLGLYSDDEIWK----AL 1326
G D+ S+ +D + ++ Q LF S+ N L LG+ +E + AL
Sbjct: 67 GEDVTHRSIQQRD----ICMVFQSYALFPHMSLGENVGYGLKMLGV-PKEERKQRVKEAL 121
Query: 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
E + L D V + S GQ+Q L R L+ + ++L+ DE +++
Sbjct: 122 E-------LVDLAGFEDRYV----DQISGGQQQRVALARALILKPKVLLFDEPLSNL--- 167
Query: 1387 TDAILQRIIR------QEFSNCTVITVAH-RVPTVIDSDMVMVLSYGKLLEYDEPSKLME 1439
DA L+R +R Q+ N T + V H + SD V+V++ GK+++ P +L
Sbjct: 168 -DANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226
Query: 1440 T-NSSF 1444
S F
Sbjct: 227 QPASRF 232
|
Length = 351 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-06
Identities = 58/267 (21%), Positives = 106/267 (39%), Gaps = 68/267 (25%)
Query: 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL 644
R+ + +K+ L+ P + V+ ++ + + V G +GAG++ L+ +
Sbjct: 248 RLDKAPGEVRLKVDN--------LSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLY 299
Query: 645 GEIPKISGTVNLYGS--------------IAYVSQT----SWIQSGSIRDNILYGKPMDK 686
G +P+ SG V L G I Y+S+ + S+++N+
Sbjct: 300 GALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENM-------- 351
Query: 687 ARYDKAIKACALD---KDINNFDHGDLTE---------------IGQRGLNLSGGQKQRI 728
AL + + H D + + Q LSGG +Q++
Sbjct: 352 -------SLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKV 404
Query: 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV-EFLSEVDR 787
+AR + + + D+P VD ++ E ++ILV+ ++ E L DR
Sbjct: 405 AIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDR 464
Query: 788 ILVLEGGQITQSGNY------QELLLA 808
ILV+ G+I SG + QE L+A
Sbjct: 465 ILVMHEGRI--SGEFTREQATQEKLMA 489
|
Length = 501 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 6e-06
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 39/210 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQS 671
L VNL ++ A+ G GAGKS+LL + G K SG++ G I + S +++
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 672 G--------------SIRDNILYGK-PM-------DKARYD-KAIKACALDKDINNFDHG 708
G S+ DN+ G+ P DK D KAI LD DI+
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFD-ELDIDIDPRA-- 130
Query: 709 DLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
+ LS Q Q I++A+A +A I + D+P S++ LF ++ L+
Sbjct: 131 -------KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT--IIRKLK 181
Query: 769 KK--TVILVTHQVEFLSEV-DRILVLEGGQ 795
++ ++ ++H++E + ++ D I +L GQ
Sbjct: 182 ERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-06
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQ 778
LSGGQKQR+ +A + + + + D+ S +D L + E T+I +TH
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
Query: 779 VEFLSEVDRILVLEGGQITQSGNYQEL 805
+ E D ++V+ G + + G E+
Sbjct: 203 LSEAMEADHVIVMNKGTVYKEGTPTEI 229
|
Length = 269 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 40/188 (21%)
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SI-----AYVSQTS 667
G++ + + + + G GAGK+SLL + G +G V G I Y
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77
Query: 668 WI--QSGSIRD------NILYGKPMDKARYDKAIKACALDKDINNFDHGD-LTEIGQRGL 718
++ Q G I+ N+ + L ++ + L ++G G
Sbjct: 78 YLGHQPG-IKTELTALENLRF--------------YQRLHGPGDDEALWEALAQVGLAGF 122
Query: 719 ------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKK- 770
LS GQ++R+ LAR A +++ D+PF+A+D A L E ++A E+
Sbjct: 123 EDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL--EALLAQHAEQGG 180
Query: 771 TVILVTHQ 778
VIL THQ
Sbjct: 181 MVILTTHQ 188
|
Length = 204 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 7e-06
Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 41/206 (19%)
Query: 1248 VVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIP---QEPTLFR 1304
++G G+GKTT++ + P GS+L G D+ GL + ++ + I Q+PT+F
Sbjct: 33 IIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL--TGLPEHQIARAGIGRKFQKPTVFE 90
Query: 1305 G-SVRTNLDPLGLYSDDEIWKAL-------EKCQLKTTISSLPNKLDSSVSDEGENWSAG 1356
+V NL+ L L D ++ +L EK +++ + ++ L S G
Sbjct: 91 NLTVFENLE-LALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHG 147
Query: 1357 QRQLFCLGRVLLKRNRILVLDEANASIDSA----TDAILQRIIRQEFSNCTVITVAHRVP 1412
Q+Q +G +L++ ++L+LDE A + T +L+ + + +V+
Sbjct: 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGK----HSVV------- 196
Query: 1413 TVIDSDM---------VMVLSYGKLL 1429
V++ DM V VL G +L
Sbjct: 197 -VVEHDMEFVRSIADKVTVLHQGSVL 221
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-06
Identities = 55/242 (22%), Positives = 98/242 (40%), Gaps = 39/242 (16%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658
+F + A L V+ ++ + +A+ G GAGKS+L + G +++ G
Sbjct: 8 SFRYGARRA---LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHD 64
Query: 659 ----------SIAYVSQTSWIQSG-SIRDNILY-----GKPMDKARYDKAIKACALDKDI 702
+ V Q + S+R N+ Y G +AR I +
Sbjct: 65 LRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR--ARIAELLARLGL 122
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ E L+GG ++R+++ARA+ + + L D+P +D + A +
Sbjct: 123 AERADDKVRE-------LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI-TAH 174
Query: 763 V--MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA------GTAFEQ 814
V +A + +V+ TH V+ + DR++VL G++ G EL A AF
Sbjct: 175 VRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGADLEAAFLA 234
Query: 815 LV 816
L
Sbjct: 235 LT 236
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 9e-06
Identities = 51/245 (20%), Positives = 93/245 (37%), Gaps = 54/245 (22%)
Query: 1186 RIKQF--MHIPPEPPAIVEDKRP-----PSSWPFKGR--IELRQLKIRYRPNAPLVLKGI 1236
RIK+ + VE+ +P P G+ +E + Y L+LK +
Sbjct: 283 RIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGY-DGGRLLLKDL 341
Query: 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI-DGVDICSMG--LKDLRVKL 1293
+ G R+ +VG G+GK+TL+ L + P G++ + + V I +L
Sbjct: 342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDK 401
Query: 1294 SII----PQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDE 1349
+++ P VR L G +D + + L
Sbjct: 402 TVLEELSEGFPDGDEQEVRAYLGRFGFTGED----------QEKPVGVL----------- 440
Query: 1350 GENWSAGQRQLFCLGRVLLKRNRILVLDEAN-----ASIDSATDAILQRIIRQEFSNCTV 1404
S G++ L ++LL+ +L+LDE S+++ +A+ +F TV
Sbjct: 441 ----SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL------LDFEG-TV 489
Query: 1405 ITVAH 1409
+ V+H
Sbjct: 490 LLVSH 494
|
Length = 530 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 36/245 (14%)
Query: 1223 IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC 1282
IR R A LK I+ + +G V ++G +G GKTTL+ + L G+I G DI
Sbjct: 10 IRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT 69
Query: 1283 --SMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLP 1339
+D I+ Q LF +V N+ GL + + + + ++ ++ L
Sbjct: 70 RLPPQKRD----YGIVFQSYALFPNLTVADNI-AYGLKN-----RGMGRAEVAERVAELL 119
Query: 1340 NKLDSSVSDEGENW----SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRII 1395
+ + + + S GQ+Q L R L +L+LDE +++D+ L+ I
Sbjct: 120 DLVG--LPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI 177
Query: 1396 R--QEFSNCTVITVAHRVPTVID-------SDMVMVLSYGKLLEYDEPSKLMETNSSFSK 1446
R Q T I V H D +D ++V+++G + + P ++ +
Sbjct: 178 RQLQRRLGVTTIMVTH------DQEEALSMADRIVVMNHGVIEQVGTPQEIYR--HPATP 229
Query: 1447 LVAEY 1451
VA++
Sbjct: 230 FVADF 234
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 14/164 (8%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
L+ ++ T + G V V+G +G GKTTL++ + V P+ GSI ++G I G +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAER--- 76
Query: 1292 KLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEG 1350
++ Q L +V N+ GL + +EK Q + + + ++
Sbjct: 77 --GVVFQNEALLPWLNVIDNVA-FGLQL-----RGIEKAQRREIAHQMLALVGLEGAEHK 128
Query: 1351 ENW--SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQ 1392
W S G RQ + R L ++L+LDE ++D+ T +Q
Sbjct: 129 YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQ 172
|
Length = 259 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 45/214 (21%), Positives = 76/214 (35%), Gaps = 63/214 (29%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISAL--FRLVEPAGGSILIDGVDICSMGLKDL 1289
+LKG+ T +G ++G GSGK+TL + E G IL G DI + +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDL-PPEE 73
Query: 1290 RVKLSII--PQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVS 1347
R +L I Q P G K +
Sbjct: 74 RARLGIFLAFQYPPEIPGV----------------------------------KNADFLR 99
Query: 1348 DEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS-----NC 1402
E +S G+++ + ++LL + +LDE DS D R++ + +
Sbjct: 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDE----PDSGLDIDALRLVAEVINKLREEGK 155
Query: 1403 TVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSK 1436
+V+ + H Y +LL+Y +P +
Sbjct: 156 SVLIITH---------------YQRLLDYIKPDR 174
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 1e-05
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 10/157 (6%)
Query: 1231 LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290
+V+ ++ T + G G++G G+GK+T+ L ++ P G I + G + S + R
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLAR 76
Query: 1291 VKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPN--KLDSSVS 1347
V + ++PQ L +VR NL G Y + +++ I SL +L+S
Sbjct: 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYF------GMSTREIEAVIPSLLEFARLESKAD 130
Query: 1348 DEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
S G ++ L R L+ ++L+LDE +D
Sbjct: 131 VRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 26/202 (12%)
Query: 627 AVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVS---------------QT-SWIQ 670
+ G GAGK++L+ I G+ G V G Q + +
Sbjct: 35 VLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFE 94
Query: 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHG----DLTEIGQR-GLNLSGGQK 725
+ ++R+N+ DK+ + ++ A ++ D L + R LS GQK
Sbjct: 95 NLTVRENLELALNRDKSVF-ASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153
Query: 726 QRIQLARAVYNDADIYLFDDPFSAV-DAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784
Q +++ + D + L D+P + + DA T T E + + K ++++V H + F+ E
Sbjct: 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT--AELLKSLAGKHSILVVEHDMGFVRE 211
Query: 785 V-DRILVLEGGQITQSGNYQEL 805
+ D++ VL G + G+ E+
Sbjct: 212 IADKVTVLHEGSVLAEGSLDEV 233
|
Length = 249 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 58/252 (23%), Positives = 116/252 (46%), Gaps = 34/252 (13%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--VEPAG- 1271
RI+++ L I Y + ++ + + +G +G GK+T++ L R+ V P
Sbjct: 4 RIDVKDLNIYY--GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61
Query: 1272 --GSILIDGVDICSMGLKDLRVKLSI--IPQEPTLF-----RGSVRTNLDPLGLYSDDEI 1322
G +L+DG D+ G+ + V+ +I + Q P F R +V L G+ + ++
Sbjct: 62 VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDL 121
Query: 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
+ +EK L+ ++L N++ + G S GQ+Q C+ R + +L++DE ++
Sbjct: 122 DELVEK-SLRG--ANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSA 178
Query: 1383 IDSATDAILQRIIRQEFSNCTVITVAH------RVPTVIDSDMVMVLSY------GKLLE 1430
+D + ++ +I + + T++ V H RV SD + G+L+E
Sbjct: 179 LDPISTLAIEDLINELKQDYTIVIVTHNMQQAARV-----SDQTAFFNLEATGKPGRLVE 233
Query: 1431 YDEPSKLMETNS 1442
D+ K+ +
Sbjct: 234 IDDTEKIFSNPT 245
|
Length = 258 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 49/210 (23%)
Query: 1239 TFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQ 1298
+G +G++G G GKTT + L +++P GS + +K+S PQ
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS--------------EEDLKVSYKPQ 408
Query: 1299 --EPTLFRGSVR------TNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEG 1350
P + G+V Y EI K L +L + L+ V +
Sbjct: 409 YISPD-YDGTVEDLLRSAIRSAFGSSYFKTEIVKPL----------NLEDLLERPVDE-- 455
Query: 1351 ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ--EFSNCTVITVA 1408
S G+ Q + L + + +LDE +A +D I+ ++IR+ E + T + V
Sbjct: 456 --LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVD 513
Query: 1409 HRVPTVID--SDMVMVLSYGKLLEYDEPSK 1436
H + +ID SD ++V EP K
Sbjct: 514 HDI-YMIDYVSDRLIVFE-------GEPGK 535
|
Length = 591 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 44/209 (21%), Positives = 88/209 (42%), Gaps = 29/209 (13%)
Query: 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG-----VDICSMGLKD----LRVKL 1293
G +G+VG +GSGK+TL+ L + P G+ +++ + + +R +
Sbjct: 29 GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEW 88
Query: 1294 SIIPQEPT--LFR-----GSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSV 1346
+ Q P L ++ L +G I + + I P ++D
Sbjct: 89 GFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEID--PTRID--- 143
Query: 1347 SDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA----ILQRIIRQEFSNC 1402
D +S G +Q + R L+ R R++ +DE +D + A +L+ ++R
Sbjct: 144 -DLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD--LGL 200
Query: 1403 TVITVAHRVPTV-IDSDMVMVLSYGKLLE 1430
VI V H + + + ++V+ G+++E
Sbjct: 201 AVIIVTHDLGVARLLAQRLLVMQQGRVVE 229
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 52/256 (20%), Positives = 93/256 (36%), Gaps = 38/256 (14%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
G + + ++ I+ +G VG +G G+GK+T + L L+ P G
Sbjct: 21 GLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGK 80
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIW--KALEKCQL 1331
+ ++G D + L I L G + L W AL+ ++
Sbjct: 81 VRVNGKD----PFRRREEYLRSI----GLVMG-QKLQL----------WWDLPALDSLEV 121
Query: 1332 KTTISSLP-----NKLDSSVS----DEGENW-----SAGQRQLFCLGRVLLKRNRILVLD 1377
I +P +LD + W S GQR L LL ++L LD
Sbjct: 122 LKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLD 181
Query: 1378 EANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEP 1434
E +D A ++ +++ TV+ H + D V+++ G+L+
Sbjct: 182 EPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTL 241
Query: 1435 SKLMETNSSFSKLVAE 1450
++L E + + E
Sbjct: 242 AQLQEQFGPYKEFSVE 257
|
Length = 325 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 51/237 (21%), Positives = 89/237 (37%), Gaps = 56/237 (23%)
Query: 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI-------------AYVSQTSWIQSG 672
+ + G GAGKS+LL + G SG++ G AY+SQ
Sbjct: 28 LHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARHRAYLSQ------- 79
Query: 673 SIRDNILYGKPM---------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723
+ + P+ DK R L+ D ++G+ LSGG
Sbjct: 80 --QQTPPFAMPVWHYLTLHQPDKTR------TELLNDVAGALALDD--KLGRSTNQLSGG 129
Query: 724 QKQRIQLARAVYN-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVT 776
+ QR++LA V + L D+P +++D + L + +++ +
Sbjct: 130 EWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSS 189
Query: 777 HQVEF-LSEVDRILVLEGGQITQSGNYQELLLA-------GTAFEQL-VNAHRDAIT 824
H + L R +L+ G++ SG +E+L G F +L + H I+
Sbjct: 190 HDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAYGMNFRRLDIEGHPMLIS 246
|
Length = 248 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 22/171 (12%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-- 1289
V+K I+ T G +G+VG +GSGK+T AL RL+ + G I DG + ++ + L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 1290 -RVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSD 1348
R ++ ++ Q+P S+ L+ L + I + L Q + + ++ + + +
Sbjct: 360 VRHRIQVVFQDPN---SSLNPRLNVLQI-----IEEGLRVHQPTLSAAQREQQVIAVMEE 411
Query: 1349 EG----------ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA 1389
G +S GQRQ + R L+ + +++LDE +S+D A
Sbjct: 412 VGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQA 462
|
Length = 529 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 14/184 (7%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++ L Y P L+ I T G + V+G +G GKTTL++ + V GSI
Sbjct: 2 LQISHLYADY-GGKP-ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTI 1335
+DG + G + + + E L +V+ N+ GL +EK Q
Sbjct: 60 LDGKPVEGPGAE----RGVVFQNEGLLPWRNVQDNV-AFGLQ-----LAGVEKMQRLEIA 109
Query: 1336 SSLPNKLDSSVSDEGENW--SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQR 1393
+ K+ +++ W S GQRQ + R L ++L+LDE ++D+ T +Q
Sbjct: 110 HQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQT 169
Query: 1394 IIRQ 1397
++ +
Sbjct: 170 LLLK 173
|
Length = 255 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 53/214 (24%), Positives = 87/214 (40%), Gaps = 43/214 (20%)
Query: 628 VCGSVG---AGKSSLLYAILGEIPKISGTVNLYGS-------------IAYVSQTSWIQS 671
V G +G +GKS+LL + P G + L +AY+ Q
Sbjct: 39 VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAE 98
Query: 672 G-SIRDNILYGK-----------PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
G ++R+ + G+ D+ + ++AI L + R ++
Sbjct: 99 GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV------------GLKPLAHRLVD 146
Query: 720 -LSGGQKQRIQLARAVYNDADIYLFDDPFSAVD-AHTAATLFNECVMAALEKKTVILVTH 777
LSGG++QR +A V D+ L D+P SA+D AH L ++ TVI V H
Sbjct: 147 SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLH 206
Query: 778 QVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810
+ + D ++ L GG++ G EL+ T
Sbjct: 207 DINMAARYCDYLVALRGGEMIAQGTPAELMRGET 240
|
Length = 265 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 17/209 (8%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
LKGI+ T +G VG +G G+GKTT + L L++P G + + G+ K LR
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRR 95
Query: 1292 KLSIIPQEPTLF-----RGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSV 1346
+ Q+ L+ S L K L++ + + L LD+ V
Sbjct: 96 IGVVFGQKTQLWWDLPVIDSFYLLAAIYDL-PPARFKKRLDEL---SELLDLEELLDTPV 151
Query: 1347 SDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSN--CTV 1404
S GQR + LL IL LDE +D ++ +++ TV
Sbjct: 152 ----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTV 207
Query: 1405 ITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432
+ +H + + + V+V+ G+LL YD
Sbjct: 208 LLTSHYMKDIEALARRVLVIDKGRLL-YD 235
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 48/214 (22%), Positives = 91/214 (42%), Gaps = 31/214 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQS 671
L ++L + + + G GAGK++++ I G+ G+V G + + + ++
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 672 G--------------SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
G ++ +N+ P DK+ + A L + + L IG
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVF--ASLFFRLSAEEKDRIEEVLETIGLAD 135
Query: 718 L------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAV-DAHTAAT--LFNECVMAALE 768
LS GQKQ +++ + D + L D+P + + D T T L +A
Sbjct: 136 EADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS--LA--G 191
Query: 769 KKTVILVTHQVEFLSEV-DRILVLEGGQITQSGN 801
K +V++V H +EF+ + D++ VL G + G+
Sbjct: 192 KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 58/250 (23%), Positives = 100/250 (40%), Gaps = 42/250 (16%)
Query: 568 RINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIA 627
+ A LD + ++ + I R I+ LR +NL+IK +A
Sbjct: 365 KTFASELDIKGLPNEFQDILESFGVRQRVIER-----------YVLRNLNLEIKPGDVVA 413
Query: 628 VCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKA 687
V G GAGK++LL ILG SG + +
Sbjct: 414 VVGQSGAGKTTLLRMILGAQKGRGEEK------------YRPDSGKVEVPKNTVSALIPG 461
Query: 688 RYDKAIKACALDKDINNFDHGDLT---EIGQR-GLN-----------LSGGQKQRIQLAR 732
Y+ + + + + GDL EI R GL+ LS GQK+R +LA+
Sbjct: 462 EYEPEFGEVTILEHLRS-KTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAK 520
Query: 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK-TVILVTHQVEFLSEV--DRIL 789
+ ++ L D+ + +D TA + + A E T+I+VTH+ E + + D ++
Sbjct: 521 LLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLI 580
Query: 790 VLEGGQITQS 799
++ G++ +
Sbjct: 581 LVGYGKVPVN 590
|
Length = 593 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 36/226 (15%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQTSWIQ 670
L V+L++K + + + G GAGKS+L+ +LG + G + G I YV Q ++
Sbjct: 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYL- 78
Query: 671 SGSIRDNILYGKPMDKARYDKAIKACALDKDI----NNFDHGDLTEIGQRGLNLSGGQKQ 726
D L P+ R+ + ++ +DI G L + LSGG+ Q
Sbjct: 79 -----DTTL---PLTVNRFLR-LRPGTKKEDILPALKRVQAGHLID--APMQKLSGGETQ 127
Query: 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVTHQVEF-L 782
R+ LARA+ N + + D+P VD + L++ ++ L ++ V++V+H + +
Sbjct: 128 RVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD--LIDQLRRELDCAVLMVSHDLHLVM 185
Query: 783 SEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGP 828
++ D +L L + +GT ++V+ H + I+ GP
Sbjct: 186 AKTDEVLCLN----------HHICCSGTP--EVVSLHPEFISMFGP 219
|
Length = 251 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-05
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 706 DHGDLTEIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNE 761
+ L + R ++ LSGG+ QR+ +A A+ DAD+Y FD+P S +D AA + E
Sbjct: 199 ERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRE 258
Query: 762 CVMAALEKKTVILVTH 777
A + K VI+V H
Sbjct: 259 ---LAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-05
Identities = 63/220 (28%), Positives = 95/220 (43%), Gaps = 43/220 (19%)
Query: 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWI-QSGSIRDNILYG 681
KI V G GAGKS+LL + G + +G + Y+ Q + + ++R+N+ G
Sbjct: 33 KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEG 92
Query: 682 -----KPMDK------------ARYDKAIKACA-LDKDINNFDHGDLT---EIGQRGL-- 718
+D+ A D + A L + I+ D DL EI L
Sbjct: 93 VAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC 152
Query: 719 --------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-- 768
LSGG+++R+ L R + + D+ L D+P + +DA + A L L+
Sbjct: 153 PPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ-----HLQEY 207
Query: 769 KKTVILVTHQVEFLSEVDR-ILVLEGGQ-ITQSGNYQELL 806
TV+ VTH FL V IL L+ G+ I GNY L
Sbjct: 208 PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWL 247
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 25/93 (26%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILVT 776
LSGG QR+ +A A+ + + D+P +A+D A + ++ L++K ++L+T
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIE--LLLELQQKENMALVLIT 211
Query: 777 HQVEFLSEV-DRILVLEGGQITQSGNYQELLLA 808
H + ++E +I+V+ GQ+ ++G ++ A
Sbjct: 212 HDLALVAEAAHKIIVMYAGQVVETGKAHDIFRA 244
|
Length = 326 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 4e-05
Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 58/189 (30%)
Query: 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302
G + +VG GSGKTTL AL R + P GG ++ + I +E
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIY--------------IDGEDILEEVLD 47
Query: 1303 FRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362
+ + + AL
Sbjct: 48 QLLLIIVGGKKASGSGELRLRLALA----------------------------------- 72
Query: 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIR-------QEFSNCTVITVAHRVPTVI 1415
+ +L+LDE + +D+ +A+L + + N TVI + +
Sbjct: 73 --LARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLG 130
Query: 1416 DSDMVMVLS 1424
+ +
Sbjct: 131 PALLRRRFD 139
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 34/214 (15%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---L 1289
L+G+T G + G +G+GK+TL+ + + P+ G I G DI + ++ L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 1290 RVKLSIIPQEPTLFRGSVRTNLD----PL---GLYSDD---EIWKALEKCQLKTTISSLP 1339
R ++ +I Q+ L RT D PL G DD + AL+K L + P
Sbjct: 78 RRQIGMIFQDHHLLMD--RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP 135
Query: 1340 NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIR--Q 1397
+L S G++Q + R ++ + +L+ DE ++D DA+ + I+R +
Sbjct: 136 IQL-----------SGGEQQRVGIARAVVNKPAVLLADEPTGNLD---DALSEGILRLFE 181
Query: 1398 EFS--NCTVITVAHRVPTVIDSDM-VMVLSYGKL 1428
EF+ TV+ H + + ++ LS G L
Sbjct: 182 EFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 4e-05
Identities = 67/291 (23%), Positives = 119/291 (40%), Gaps = 54/291 (18%)
Query: 555 ALSIMIQVKVSFDRINAFLLD---HELN----NDDVRRISLQKSDRSVKIQEGNFSWDPE 607
AL ++ +V+F+++N L E D + + L+ + + Q+ FS P
Sbjct: 285 ALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELR--NVTFAYQDNGFSVGP- 341
Query: 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------I 660
+NL IK + + + G G+GKS+L + G SG + L G
Sbjct: 342 --------INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPE 393
Query: 661 AYVSQTSWIQSGSIRDNILY-------GKPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
Y S + + D L+ GKP + A +K ++ + + G ++ +
Sbjct: 394 DYRKLFSAVFT----DFHLFDQLLGPEGKPANPALVEKWLERLKM-AHKLELEDGRISNL 448
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTV 772
LS GQK+R+ L A+ + DI L D+ + D H + + E KT+
Sbjct: 449 -----KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTI 503
Query: 773 ILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAI 823
++H + DR+L + GQ+++ L G + A RDA+
Sbjct: 504 FAISHDDHYFIHADRLLEMRNGQLSE--------LTGEERDA---ASRDAV 543
|
Length = 547 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 4e-05
Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 26/221 (11%)
Query: 1236 ITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-RVKLS 1294
++ G + +VG G+GK+TL++ + L+ P GSI G + + +L R +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 1295 IIPQEPTLFRGSVRTNLD---PLGLYSDDEIWKALEK-CQLKTTISSLPNKLDSSVSDEG 1350
+ Q+ F V L P ++ + AL + + L +KL SV+
Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEA-VASALNEVAEA----LGLDDKLGRSVN--- 125
Query: 1351 ENWSAGQRQLFCLGRVLLK-------RNRILVLDEANASIDSATDAILQRIIRQEFSNC- 1402
S G+ Q L V+L+ ++L+LDE S+D A A L R++ E
Sbjct: 126 -QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLS-ELCQQG 183
Query: 1403 -TVITVAHRVP-TVIDSDMVMVLSYGKLLEYDEPSKLMETN 1441
V+ +H + T+ +D V +L GKLL +++
Sbjct: 184 IAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPE 224
|
Length = 248 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 48/211 (22%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLY--------- 657
IP L+ + +K + + V G G+G S+LL A+ + G + Y
Sbjct: 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI-HYNGIPYKEFA 78
Query: 658 ----GSIAYVSQTSW-IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
G I YVS+ + ++R+ + D A++ N F G
Sbjct: 79 EKYPGEIIYVSEEDVHFPTLTVRETL-----------DFALRCKG-----NEFVRG---- 118
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC-VMAALEKKT 771
+SGG+++R+ +A A+ + A + +D+ +D+ TA + MA + K T
Sbjct: 119 -------ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 772 VILVTHQ--VEFLSEVDRILVLEGGQITQSG 800
+ +Q E D++LVL G+ G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 5e-05
Identities = 89/435 (20%), Positives = 155/435 (35%), Gaps = 98/435 (22%)
Query: 507 YWMSPTIISSVIFLGCALTGSAPLN----ASTIFTVLATLRSMGEPVRMIPEALSIMIQV 562
+W II S L+ P N S I +L L SM ++P M +
Sbjct: 299 FWYGTRIIIS------DLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSL 352
Query: 563 KVS---FDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLD 619
+ + ++ IN L NNDD +++ K + ++ + F +D + + +N
Sbjct: 353 EATNSLYEIINRKPLVE--NNDDGKKL---KDIKKIQFKNVRFHYDTRKDVEIYKDLNFT 407
Query: 620 IKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------------IAYVSQ 665
+ + A G G GKS++L I G + + S I VSQ
Sbjct: 408 LTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQ 467
Query: 666 TSWIQSGSIRDNILYG----------------------KPMDKARYDKAIKACALDKDIN 703
+ S SI++NI Y + +K +A A L+ N
Sbjct: 468 DPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527
Query: 704 NFDHGDLTE------------------------------------IGQRGLNLSGGQKQR 727
D +L E +G LSGGQKQR
Sbjct: 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQR 587
Query: 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV--MAALEKKTVILVTHQVEFLSEV 785
I +ARA+ + I + D+ S++D + + L + + + E + I++ H++ +
Sbjct: 588 ISIARAIIRNPKILILDEATSSLD-NKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYA 646
Query: 786 DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNA----GQGGAEKVE 841
+ I VL + + + + T + N + +N G+ +E
Sbjct: 647 NTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIE 706
Query: 842 KG-RTARPEEPNGIY 855
+G A + NGIY
Sbjct: 707 QGTHDALMKNKNGIY 721
|
Length = 1466 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 52/227 (22%)
Query: 1231 LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG---GSILIDGV-------- 1279
+L ++ G + ++G +GSGKTTL+ A+ VE G G IL +G
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ 80
Query: 1280 DICSMGLKD------LRVKLSI----IPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKC 1329
+ +D L V+ ++ I + P ++R L D
Sbjct: 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRD---------- 130
Query: 1330 QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA 1389
++ + L + S G+R+ + LL ++L+LDE + +DS T
Sbjct: 131 ---LALTRIGGNLVKGI-------SGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTAL 180
Query: 1390 ILQRIIRQ-EFSNCTVITVAHRVPTVIDSDM------VMVLSYGKLL 1429
L + Q N VI H+ P SD+ +++LS G+++
Sbjct: 181 NLVSTLSQLARRNRIVILTIHQ-PR---SDLFRLFDRILLLSSGEIV 223
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 5e-05
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---TVILV 775
NLSGGQKQR+ +A + + I + D+ S +D + ++ L+KK TVI +
Sbjct: 143 NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK--LIRKLKKKNNLTVISI 200
Query: 776 THQVEFLSEVDRILVLEGGQITQSGNYQEL 805
TH ++ + D++LVL+ G++ G+ E+
Sbjct: 201 THDIDEANMADQVLVLDDGKLLAQGSPVEI 230
|
Length = 282 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 5e-05
Identities = 49/215 (22%), Positives = 84/215 (39%), Gaps = 29/215 (13%)
Query: 617 NLDIKWAQKIAVC--GSVGAGKSSLL------------------YAILGEIPKISGTVNL 656
N + + + C G+ G+GKS+++ YAI + KI L
Sbjct: 29 NTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRL 88
Query: 657 YGSIAYVSQTSWIQ--SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714
I V Q Q +I +I +G +A K + +
Sbjct: 89 RKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE----DYV 144
Query: 715 QRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTV 772
+R LSGGQK+R+ LA + D + + D+P +D N + KK +
Sbjct: 145 KRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRI 204
Query: 773 ILVTHQV-EFLSEVDRILVLEGGQITQSGNYQELL 806
I+VTH + + L D ++V+ G++ G+ E+
Sbjct: 205 IMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239
|
Length = 289 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 34/228 (14%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
P L+G+NLD + + G+ G GKS+L + G + G V G S+ +
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLL- 73
Query: 671 SGSIRDNI--LYGKPMDKARYDKAIKACALDKDINNFDHGDL----TEIGQR---GLNL- 720
++R + ++ P ++ I +D DI F +L EI +R L L
Sbjct: 74 --ALRQQVATVFQDP------EQQIFYTDIDSDIA-FSLRNLGVPEAEITRRVDEALTLV 124
Query: 721 -------------SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
S GQK+R+ +A A+ A L D+P + +D +
Sbjct: 125 DAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA 184
Query: 768 EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQ 814
+ VI+ +H ++ + E+ D + VL GQI G E+ A EQ
Sbjct: 185 QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQ 232
|
Length = 271 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-05
Identities = 61/254 (24%), Positives = 110/254 (43%), Gaps = 41/254 (16%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+ L RY + VLKG++ + G + ++G +GSGK+T + + L +P+ GSI
Sbjct: 7 LEVEDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR 64
Query: 1276 IDGVDIC-------------SMGLKDLRVKLSIIPQEPTLFRGSVRTNLD-----P---L 1314
++G +I L+ LR +L ++ Q L+ S T L+ P L
Sbjct: 65 VNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLW--SHMTVLENVIEAPVHVL 122
Query: 1315 GLYSDDEIWKA---LEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371
G+ + I +A L K + + P L S GQ+Q + R L
Sbjct: 123 GVSKAEAIERAEKYLAKVGIAEKADAYPAHL-----------SGGQQQRVAIARALAMEP 171
Query: 1372 RILVLDEANASIDSATDAILQRIIRQ-EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLL 1429
+++ DE +++D + ++++ T++ V H + D S V+ L GK+
Sbjct: 172 EVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231
Query: 1430 EYDEPSKLMETNSS 1443
E P ++ S
Sbjct: 232 EEGPPEQVFGNPQS 245
|
Length = 256 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDAD--IYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
+GQ+ LSGG+ QR++LA ++++ +++ D+P + + L
Sbjct: 81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGN 140
Query: 771 TVILVTHQVEFLSEVDRILVL------EGGQITQSG 800
TVIL+ H ++ LS D I+ GG++ SG
Sbjct: 141 TVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 7e-05
Identities = 37/181 (20%), Positives = 84/181 (46%), Gaps = 8/181 (4%)
Query: 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGG-----SILIDGVDICSMGLKDLRVK--LS 1294
+ G +G +G GK+T++ +L R+ + G + G D+ G+ + V+ +
Sbjct: 33 KNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIG 92
Query: 1295 IIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWS 1354
++ Q+P F S+ N+ GL + ++ + ++L +++ + G + S
Sbjct: 93 MVFQQPNPFSMSIFDNV-AFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLS 151
Query: 1355 AGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTV 1414
GQ+Q C+ R + +L+LDE +++D ++ ++ + + T+ V H +
Sbjct: 152 GGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQA 211
Query: 1415 I 1415
I
Sbjct: 212 I 212
|
Length = 261 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-05
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAALEKKTVILV 775
LSGG+ QR+ +A A+ DAD Y FD+P S +D AA L E A + V++V
Sbjct: 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL---AEDDNYVLVV 195
Query: 776 THQ---VEFLSEVDRILVLEG 793
H +++LS D I L G
Sbjct: 196 EHDLAVLDYLS--DYIHCLYG 214
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 8e-05
Identities = 29/107 (27%), Positives = 58/107 (54%), Gaps = 8/107 (7%)
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
DH D + L+ G+ Q++ +A A+ N + + D+P +A++ T A +F ++
Sbjct: 147 DHKDA--MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFR--LLT 202
Query: 766 ALEKK---TVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808
L + T++L++H ++ LS+ D+I VL GQ ++ +EL+
Sbjct: 203 RLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTT 249
|
Length = 330 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 9e-05
Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 49/218 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYG-SIAYVSQTSW-- 668
L V+L +K + +A+ G G GKS+L ++G E P G V+ G +A +++
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS-QGNVSWRGEPLAKLNRAQRKA 86
Query: 669 ----IQ------------SGSIRDNILYGKPM------DKA----RYDKAIKACALDKDI 702
IQ ++R+ I +P+ DKA R + ++A LD +
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLDDSV 144
Query: 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC 762
+ +R LSGGQ QR+ LARA+ + + + D+ S +D A +
Sbjct: 145 ----------LDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR-- 192
Query: 763 VMAALEKKT---VILVTHQVEFLSE-VDRILVLEGGQI 796
++ L+++ + +TH + + R++V++ GQI
Sbjct: 193 LLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 9e-05
Identities = 55/219 (25%), Positives = 96/219 (43%), Gaps = 53/219 (24%)
Query: 1227 PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL 1286
P +LK I+ +F G ++GV+G G+GK+TL+ + AG +G + G
Sbjct: 15 PPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIM------AGVDKEFNGEARPAPG- 67
Query: 1287 KDLRVKLSIIPQEPTL-----FRGSVRTNLDPL-----------GLYS--DDEIWKALEK 1328
+K+ +PQEP L R +V + + ++ D ++ L +
Sbjct: 68 ----IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAE 123
Query: 1329 -CQLKTTISS-----LPNKL------------DSSVSDEGENWSAGQRQLFCLGRVLLKR 1370
+L+ I + L KL D+ V S G+R+ L R+LL +
Sbjct: 124 QAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADV----TKLSGGERRRVALCRLLLSK 179
Query: 1371 NRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAH 1409
+L+LDE +D+ + A L++ + QE+ TV+ V H
Sbjct: 180 PDMLLLDEPTNHLDAESVAWLEQHL-QEYPG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 9e-05
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 24/166 (14%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS---MGLKDL 1289
L G++ T G + VVG +G GK+TL L + P GG + G D+ K L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 1290 RVKLSIIPQEP--TLF-RGSVRTNL-DPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSS 1345
R K+ I+ Q P +L R V L +PL I +L + + ++ K
Sbjct: 91 RQKIQIVFQNPYGSLNPRKKVGQILEEPL------LINTSLSAAERREKALAMMAK---- 140
Query: 1346 VSDEGENW-------SAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
V E++ S GQRQ + R L+ ++V DE +++D
Sbjct: 141 VGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 9e-05
Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 60/230 (26%)
Query: 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYG 681
QK+ + G G GKS+LL + EI G+ G +A+V+Q + + ++
Sbjct: 28 QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVI-- 85
Query: 682 KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ-----------------RGL------ 718
D R + ++A D + N H T G+ GL
Sbjct: 86 ---DGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQ 142
Query: 719 ------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--- 769
+ SGG + R+ LA+A+ +D+ L D+P + +D A ++ LEK
Sbjct: 143 LERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLD--AVIW-------LEKWLK 193
Query: 770 ---KTVILVTHQVEFLSE-VDRILVLEGGQITQ-SGNYQELLLAGTAFEQ 814
T+IL++H +FL VD+I+ +E + + +GNY ++FE
Sbjct: 194 SYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNY-------SSFEV 236
|
Length = 638 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 60/255 (23%), Positives = 107/255 (41%), Gaps = 63/255 (24%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ELR + + V+ + T + G + ++G +G GKTT++ + P G I+
Sbjct: 15 VELRGISKSFDGKE--VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEP----TLFRG-------SVRTNLDPLGL----YSDD 1320
+DG DI + +P E T+F+ +V N+ GL
Sbjct: 73 LDGQDI------------THVPAENRHVNTVFQSYALFPHMTVFENV-AFGLRMQKTPAA 119
Query: 1321 EIWK----ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVL 1376
EI AL QL+ P++L S GQ+Q + R ++ + ++L+L
Sbjct: 120 EITPRVMEALRMVQLEEFAQRKPHQL-----------SGGQQQRVAIARAVVNKPKVLLL 168
Query: 1377 DEANASIDSATDAILQRIIRQEFS------NCTVITVAH-RVPTVIDSDMVMVLSYGKLL 1429
DE+ SA D L++ ++ E T + V H + + SD ++V+ G++
Sbjct: 169 DESL----SALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE 224
Query: 1430 E-------YDEPSKL 1437
+ Y+EP L
Sbjct: 225 QDGTPREIYEEPKNL 239
|
Length = 375 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 57/266 (21%), Positives = 113/266 (42%), Gaps = 44/266 (16%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PA 1270
+ L + Y L +K + + +G +G GK+T++ RL +
Sbjct: 11 LRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV 68
Query: 1271 GGSILIDGVDICSMGLK--DLRVKLSIIPQEPTLFRGSVRTNL----DPLGLYSD-DE-I 1322
G + G ++ + + ++R ++ ++ Q+P F S+ N+ G D DE +
Sbjct: 69 EGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELV 128
Query: 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
++L + L + +KL S G + S GQ+Q C+ R + + ++++DE ++
Sbjct: 129 ERSLRQAALWDEVK---DKLKQS----GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181
Query: 1383 IDSATDAILQRIIRQEFSNCTVITVAH------RVPTVIDSDMVMVLS---------YGK 1427
+D + ++ ++ + T+I V H RV SDM + YG
Sbjct: 182 LDPISTLRIEELMHELKEQYTIIIVTHNMQQAARV-----SDMTAFFNVELTEGGGRYGY 236
Query: 1428 LLEYDEPSKLMETNSSFSKLVAEYWS 1453
L+E+D K+ NS + +Y S
Sbjct: 237 LVEFDRTEKIF--NSPQQQATRDYVS 260
|
Length = 264 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 48/192 (25%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE + + + P VL I +G V ++G +GSGK+TL+ + +L E G ++
Sbjct: 2 IEFKNVSKHFGPTQ--VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQE-----------------------PTLFRGSVRTNLD 1312
+DG+ + D +V +I QE P RG+ + +
Sbjct: 60 VDGLKV-----NDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAE 114
Query: 1313 PLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372
+ L K L P++L S GQ+Q + R L + +
Sbjct: 115 KQAR-------ELLAKVGLAERAHHYPSEL-----------SGGQQQRVAIARALAVKPK 156
Query: 1373 ILVLDEANASID 1384
+++ DE +++D
Sbjct: 157 LMLFDEPTSALD 168
|
Length = 240 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 25/89 (28%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQ 778
LS G++ R+ LA+ + + I + D+P +D T + + + A E ++T I+V+H
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487
Query: 779 VEFLSEV-DRILVLEGGQITQSGNYQELL 806
++F+ +V DR ++ G+I + G+ +E++
Sbjct: 488 MDFVLDVCDRAALMRDGKIVKIGDPEEIV 516
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 13/204 (6%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291
+ I+ G G++G G+GKTT + L+EP G I +G + ++++
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKN 72
Query: 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSS--VSDE 1349
++ +P+E L+ T D L ++ K + K +++ + + +L+ + +
Sbjct: 73 RIGYLPEERGLYPKM--TVEDQLKYLAE---LKGMPKAEIQKKLQAWLERLEIVGKKTKK 127
Query: 1350 GENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVA 1408
+ S G +Q ++ +L+LDE + +D +L+ I + T+I +
Sbjct: 128 IKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSS 187
Query: 1409 HRVPTVID-SDMVMVLSYGKLLEY 1431
HR+ V + D +++L G+ + Y
Sbjct: 188 HRMEHVEELCDRLLMLKKGQTVLY 211
|
Length = 300 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 27/93 (29%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKT---VILVT 776
LSGG +QR+ +A A+ + + D+P +A+D A + ++ L+K+ VI +T
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ--LIKVLQKEMSMGVIFIT 226
Query: 777 HQVEFLSEV-DRILVLEGGQITQSGNYQELLLA 808
H + ++E+ DR+LV+ G+ ++G+ +++ A
Sbjct: 227 HDMGVVAEIADRVLVMYQGEAVETGSVEQIFHA 259
|
Length = 623 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 61/207 (29%), Positives = 88/207 (42%), Gaps = 57/207 (27%)
Query: 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---IAYVSQ---------TSW--IQS 671
+ V G GAGKS+L I G+ SGT+ + G +AYV Q T W I
Sbjct: 351 VGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETVKLAYVDQSRDALDPNKTVWEEISG 409
Query: 672 GSIRDNILYGKPMDKAR-YDKAIKACALDKDINNFDHGDLTE-IGQRGLNLSGGQKQRIQ 729
G D I GK +R Y NF D + +GQ LSGG++ R+
Sbjct: 410 GL--DIIQLGKREVPSRAYVGRF----------NFKGSDQQKKVGQ----LSGGERNRVH 453
Query: 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK------TVILVTHQVEFLS 783
LA+ + + ++ L D+P + +D T + ALE+ ++++H FL
Sbjct: 454 LAKTLKSGGNVLLLDEPTNDLDVET---------LRALEEALLEFAGCAVVISHDRWFL- 503
Query: 784 EVDR----ILVLEG-GQITQ-SGNYQE 804
DR IL EG + GNY E
Sbjct: 504 --DRIATHILAFEGDSHVEWFEGNYSE 528
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 24/89 (26%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTHQ 778
L+ G+ Q++ +A A+ N + + D+P ++++ T A +F + T++L++H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 779 VEFLSE-VDRILVLEGGQITQSGNYQELL 806
++ +S+ D+I VL GQ +S +EL+
Sbjct: 219 LQMISQWADKINVLYCGQTVESAPSEELV 247
|
Length = 330 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 1e-04
Identities = 53/199 (26%), Positives = 79/199 (39%), Gaps = 50/199 (25%)
Query: 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQE-P 1300
EG +G+VG G GKTT L +++P G + + +K+S PQ
Sbjct: 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIK 410
Query: 1301 TLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTIS---SLPNKLDSSVSDEGENWSAGQ 1357
+ G+V L I L K+ I L LD +V D S G+
Sbjct: 411 PDYDGTVEDLL--------RSITDDLGSSYYKSEIIKPLQLERLLDKNVKD----LSGGE 458
Query: 1358 RQLFCLGRV-----LLKRNRILVLDEANASID-----SATDAILQRIIRQEFSNCTVITV 1407
Q RV L + + +LDE +A +D + AI +RI + T + V
Sbjct: 459 LQ-----RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAI-RRIAEE--REATALVV 510
Query: 1408 AHRVPTVID--SDMVMVLS 1424
H + +ID SD +MV
Sbjct: 511 DHDI-YMIDYISDRLMVFE 528
|
Length = 590 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 38/229 (16%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG--GSILIDGVDICSMGLKDL 1289
+L G+T S G + V+G +GSGK+TL++AL ++ G+IL + LK
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK-- 140
Query: 1290 RVKLSIIPQEPTLF-RGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSD 1348
+ + Q+ L+ +VR L L + K+L K Q K ++ +S +S+
Sbjct: 141 --RTGFVTQDDILYPHLTVRETLVFCSLL---RLPKSLTK-QEKILVA------ESVISE 188
Query: 1349 EG----ENW----------SAGQRQLFCLGRVLLKRNRILVLDEANASIDS-ATDAILQR 1393
G EN S G+R+ + +L +L+LDE + +D+ A ++
Sbjct: 189 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLT 248
Query: 1394 IIRQEFSNCTVITVAH----RVPTVIDSDMVMVLSYGKLLEYDEPSKLM 1438
+ T++T H RV + DS V+VLS G+ L + + S M
Sbjct: 249 LGSLAQKGKTIVTSMHQPSSRVYQMFDS--VLVLSEGRCLFFGKGSDAM 295
|
Length = 659 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 31/211 (14%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--KISGTVNLYGS-------- 659
+ L G++L+++ + + +CG GAGKS+L+ + G P G + GS
Sbjct: 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIR 73
Query: 660 ------IAYVSQT-SWIQSGSIRDNILYGK----PMDKARYDKAIKAC-ALDKDINNFDH 707
I + Q + + S+ +NI G P + Y+ L +++
Sbjct: 74 DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDAD 133
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
+G G GGQ+Q +++A+A+ A + + D+P S++ L + ++ L
Sbjct: 134 NVTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLD--IIRDL 187
Query: 768 EKKTV--ILVTHQVEFLSEV-DRILVLEGGQ 795
+ V + ++H++ + V D I V+ GQ
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 35/212 (16%)
Query: 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG-----VDICSMGLKD----LRVKL 1293
G +G+VG +GSGKTTL+ + + P G++ D+ +M + LR +
Sbjct: 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEW 91
Query: 1294 SIIPQEPT--LFR-----GSVRTNLDPLGL--YSD--DEIWKALEKCQLKTTISSLPNKL 1342
+ Q P L G++ L +G Y + E LE+ ++ +++
Sbjct: 92 GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID------LDRI 145
Query: 1343 DSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIR---QEF 1399
D D +S G +Q + R L+ R R++ +DE +D + A L ++R +E
Sbjct: 146 D----DLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL 201
Query: 1400 SNCTVITVAHRVPTV-IDSDMVMVLSYGKLLE 1430
V+ V H + + +D +MV+ G+++E
Sbjct: 202 -GLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232
|
Length = 258 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 49/220 (22%)
Query: 1241 SEGTRVG-------------VVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK 1287
+E TR+G +VG G+GK+TL++ + + GSI G + +
Sbjct: 10 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSAT 68
Query: 1288 DL---RVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTIS---SLPNK 1341
+L R LS Q+ F V L L+ D+ + +L ++ +L +K
Sbjct: 69 ELARHRAYLS--QQQTPPFAMPV---WHYLTLHQPDK-----TRTELLNDVAGALALDDK 118
Query: 1342 LDSSVSDEGENWSAGQRQLFCLGRVLLK-------RNRILVLDEANASID----SATDAI 1390
L S + S G+ Q L V+L+ ++L+LDE S+D SA D +
Sbjct: 119 LGRSTN----QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRL 174
Query: 1391 LQRIIRQEFSNCTVITVAHRVP-TVIDSDMVMVLSYGKLL 1429
L + +Q ++ +H + T+ + +L GKLL
Sbjct: 175 LSALCQQ---GLAIVMSSHDLNHTLRHAHRAWLLKRGKLL 211
|
Length = 248 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-04
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAALEKKTVILV 775
+LSGG+ QR+ +A + DAD+YL D+P + +D A +A + T ++V
Sbjct: 453 DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR--IAEEREATALVV 510
Query: 776 THQVEFLSEV-DRILVLEG 793
H + + + DR++V EG
Sbjct: 511 DHDIYMIDYISDRLMVFEG 529
|
Length = 590 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-04
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 22/83 (26%)
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---T 754
LD+DI+ LSGG+ QR+ +A A+ DAD Y FD+P S +D
Sbjct: 206 LDRDISE---------------LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLN 250
Query: 755 AATLFNECVMAALEKKTVILVTH 777
A L E E K V++V H
Sbjct: 251 VARLIRE----LAEGKYVLVVEH 269
|
Length = 590 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 54/232 (23%), Positives = 105/232 (45%), Gaps = 41/232 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQS 671
L ++ D + Q A+ G GAGKS+LL + G +G++ + G + + S T+ + +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 672 G--------------SIRDNILYGKPMDKARY--DKAIKACALDKDINNFDHGDLTEIG- 714
G ++ +N+ G+ K + + A ++ L +G
Sbjct: 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQ---------LEHLGV 130
Query: 715 -----QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-- 767
LS GQ+Q +++A+A+ +A + FD+P S++ A LF V+ L
Sbjct: 131 DIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR--VIRELRA 188
Query: 768 EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
E + ++ V+H++E + + D I V + G+ + + +A +QLV A
Sbjct: 189 EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD----MAQVDRDQLVQA 236
|
Length = 501 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 51/183 (27%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT--VNLYGS-------- 659
+P L+ V+L + + +A+ G GAGKS+LL ++ SG V G+
Sbjct: 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80
Query: 660 -----------IAYVSQ---------TSWIQSGSIRDNILYGKPMDKARYDKAIKACALD 699
I YVSQ + + + + G P + AR +A L
Sbjct: 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAAR----ARARELL 133
Query: 700 KDINNFDHGDLTEIGQRGLNL-----SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754
+N I +R +L SGG++QR+ +AR D I L D+P +++DA
Sbjct: 134 ARLN---------IPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAAN 184
Query: 755 AAT 757
Sbjct: 185 RQV 187
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 720 LSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILV 775
LSGG+K+ LA + +Y+ D+ +D L + ++ VI++
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 776 THQVEFLSEVDRIL 789
TH E D+++
Sbjct: 138 THLPELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 25/205 (12%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI 669
I L V+L I + + + G+ GAGK++LL + G+ SG + G QT+ I
Sbjct: 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI 77
Query: 670 QSGSI---------------RDNILYGKPM-DKARYDKAIKAC-ALDKDINNFDHGDLTE 712
++ +N+ G ++ ++ + IK L ++
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRI----- 132
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV 772
QR +SGG++Q + + RA+ + + L D+P + +F+ + T+
Sbjct: 133 --QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTI 190
Query: 773 ILVTHQV-EFLSEVDRILVLEGGQI 796
LV + L DR VLE G +
Sbjct: 191 FLVEQNANQALKLADRGYVLENGHV 215
|
Length = 237 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 31/216 (14%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++R + R N + I+ T G ++G +G GKTTL+ + + P G IL
Sbjct: 8 VDMRGVSFT-RGNRC-IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL 65
Query: 1276 IDGVDICSM---GLKDLRVKLSIIPQEPTLFRG-SV----------RTNLDPLGLYSDDE 1321
DG +I +M L +R ++S++ Q LF +V T L L+S
Sbjct: 66 FDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHS--T 123
Query: 1322 IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381
+ LE L+ +P++L S G + L R + +++ DE
Sbjct: 124 VMMKLEAVGLRGAAKLMPSEL-----------SGGMARRAALARAIALEPDLIMFDEPFV 172
Query: 1382 SIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVI 1415
D T +L ++I + S T + V+H VP V+
Sbjct: 173 GQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVL 208
|
Length = 269 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 4e-04
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 27/213 (12%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LRV 1291
L I+ G ++G G+GK+TL+ L +P GSILIDG ++ L
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 1292 KLSIIPQE----PTLFRGSVRTNL------DPLGLYSDDEIWKALEKCQLKTTISSLPNK 1341
++II QE P + +V NL G+ + + L
Sbjct: 80 GVAIIYQELHLVPEM---TVAENLYLGQLPHKGGI---------VNRRLLNYEAREQLEH 127
Query: 1342 LDSSVSDEG--ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF 1399
L + + + S GQRQ+ + + L + R++ DE +S+ + L R+IR+
Sbjct: 128 LGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELR 187
Query: 1400 SNCTVIT-VAHRVPTVID-SDMVMVLSYGKLLE 1430
+ VI V+HR+ + D + V G+ +
Sbjct: 188 AEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220
|
Length = 501 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 47/247 (19%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP----KISGTVNLYGSIAY 662
+ A P + GV+L ++ + +A+ G G+GKS A LG +P + +G V L G
Sbjct: 13 QAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVA 72
Query: 663 VSQTSWIQSGSIRDN-------------------ILYGKPMDKARYDKAIKACALDKDIN 703
+ +I N + GKP D A A++A L+
Sbjct: 73 PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA-- 130
Query: 704 NFDHGDLTEIGQRGLNL-----SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
R L L SGG QR+ +A A+ +A + D+P + +D A +
Sbjct: 131 -----------ARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARI 179
Query: 759 FNECVMAALEKKT--VILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLA--GTAFE 813
+ + + ++K+ ++LVTH + ++ + D + V+ G+I + G+ + L A
Sbjct: 180 L-DLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTR 238
Query: 814 QLVNAHR 820
LV+AH
Sbjct: 239 SLVSAHL 245
|
Length = 254 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 59/236 (25%), Positives = 89/236 (37%), Gaps = 63/236 (26%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--------KISGTVNLYGSI---- 660
LR ++L I+ + A+ G GAGKS+LL A+ G++ +++G V L G
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76
Query: 661 ---------AYVSQTSWIQSG---SIRDNILYGK-PMDK-----ARYDKAIKACALDK-D 701
A + Q + Q S R+ +L G+ P + D I AL
Sbjct: 77 DAPRLARLRAVLPQAA--QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG 134
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN---------DADIYLFDDPFSAVD- 751
D+T LSGG+ R+Q AR + L D+P +A+D
Sbjct: 135 ATALVGRDVT-------TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187
Query: 752 AH------TAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800
AH T L + + L + H + DRI +L G I G
Sbjct: 188 AHQHRLLDTVRRLARDWNLGVLA------IVHDPNLAARHADRIAMLADGAIVAHG 237
|
Length = 272 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-04
Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 51/221 (23%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668
+ L V+L ++ + +++CG GAGKS+L+ + G P GT G I + +
Sbjct: 17 GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP--HGTYE--GEIIFEGEE-- 70
Query: 669 IQSGSIRD-----------------------NILYG-KPMDKAR--YDKAIKACA----- 697
+Q+ +IRD NI G + YD
Sbjct: 71 LQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQ 130
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
L DIN NL GQ+Q +++A+A+ A + + D+P +++ A
Sbjct: 131 LKLDIN---------PATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAV 181
Query: 758 LFNECVMAALEKKTV--ILVTHQVEFLSEV-DRILVLEGGQ 795
L + ++ L+ + I ++H++ + + D I V+ G+
Sbjct: 182 LLD--IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-04
Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 17/176 (9%)
Query: 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LRV 1291
LK + T G ++G G+GK+TL+ L + EP G+I I+ ++ + K ++
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 1292 KLSIIPQEPTLFRG-SVRTNL--------DPLGLYSDDEIWKAL-EKCQLKTTISSLPNK 1341
+ II QE ++ +V NL G+ D W+ + + + L
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIID--WREMRVRAAMMLLRVGLKVD 138
Query: 1342 LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ 1397
LD V N S +Q+ + + L+ +++++DE +S+ + L I+ Q
Sbjct: 139 LDEKV----ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190
|
Length = 510 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 35/217 (16%)
Query: 1235 GITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP----AGGSILIDGVDICSMGLKDLR 1290
+ + G + +VG +GSGK+ A+ L+ P G IL+DG + + ++
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR- 62
Query: 1291 VKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNK-----LDSS 1345
++ I Q P RT +PL + A+E + +S L++
Sbjct: 63 -HIATIMQNP-------RTAFNPLFTMGN----HAIETLRSLGKLSKQARALILEALEAV 110
Query: 1346 VSDEGEN--------WSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA-ILQ--RI 1394
+ E S G Q + LL L+ DE +D A +L+ R
Sbjct: 111 GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 1395 IRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430
+RQ F ++ + H + V +D V V+ G+++E
Sbjct: 171 LRQLFG-TGILLITHDLGVVARIADEVAVMDDGRIVE 206
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-04
Identities = 57/228 (25%), Positives = 92/228 (40%), Gaps = 46/228 (20%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALF--RLVEPAGGSILIDGVDICSMGLKDL 1289
+LKG+ T +G ++G GSGK+TL + E G+IL G D+ + D
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL-EPDE 73
Query: 1290 RVKLSII--PQEPTLFRGS-----VRTNLDPLGLYSDDEIWKALE-KCQLKTTISSLPNK 1341
R + + Q P G +R+ L+ +E L+ LK ++ L
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALL--G 131
Query: 1342 LDSSVSDEGEN--WSAGQRQLFCLGRVLLKRNRIL----------VLDEANASIDSATDA 1389
+D + N +S G++ KRN IL +LDE IDS D
Sbjct: 132 MDEEFLNRSVNEGFSGGEK----------KRNEILQMALLEPKLAILDE----IDSGLDI 177
Query: 1390 ILQRII-------RQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLE 1430
+I+ R+ + +IT R+ I D V VL G++++
Sbjct: 178 DALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK 225
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 6e-04
Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 41/176 (23%)
Query: 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDI--------CSMGL----KDLRVKL 1293
+G+ G G+G+T L ALF + G IL+DG + G+ +D R
Sbjct: 288 LGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPED-RKSE 346
Query: 1294 SIIPQEPTLFRGSVRTNL--------DPLGLYS----DDEIWKALEKCQLKTTISSLPNK 1341
++ S+ N+ GL + + + ++KT
Sbjct: 347 GLVLDM------SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKT-------- 392
Query: 1342 LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ 1397
S S G +Q L R L ++L+LDE ID A + R+IR+
Sbjct: 393 --PSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRE 446
|
Length = 500 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 6e-04
Identities = 56/230 (24%), Positives = 92/230 (40%), Gaps = 59/230 (25%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV----------NLYG-SIA 661
R V+ D+ + + + G G+GK++LL A+ + +G V +LY S A
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 662 ---YVSQTSWIQSGSIRDNILYGKPMD--------------KARYDKAIKACALD----K 700
+ +T W G + + G M AR+ I+A A D
Sbjct: 82 ERRRLLRTEW---GFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERV 138
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA---- 756
+I D I SGG +QR+Q+AR + + D+P +D A
Sbjct: 139 EI------DAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLD 192
Query: 757 ---TLFNECVMAALEKKTVILVTHQ---VEFLSEVDRILVLEGGQITQSG 800
L E +A V++VTH L+ R+LV++ G++ +SG
Sbjct: 193 LLRGLVRELGLA------VVIVTHDLAVARLLA--HRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 7e-04
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSA-TDAILQRIIRQEFSNCTVITVAHRVP 1412
S G+RQ+ + R L + R+L+LDE A++ A + + + I R VI ++HR+
Sbjct: 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143
Query: 1413 TVID-SDMVMVLSYGKL 1428
V + +D V VL G++
Sbjct: 144 EVFEIADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 9e-04
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 24/181 (13%)
Query: 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI----DGVDICSMGLK 1287
VL+ ++ + + G V + G +GSGK+TL+ +L+ P G IL+ + VD+ + +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 1288 D-LRVK----------LSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTIS 1336
+ L V+ L +IP+ L V L G+ + A K T
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSAL--DVVAEPLLARGVPREV----ARAKAADLLTRL 139
Query: 1337 SLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIR 1396
+LP +L S +S G++Q + R + IL+LDE AS+D+ A++ +IR
Sbjct: 140 NLPERLWSLAP---ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIR 196
Query: 1397 Q 1397
+
Sbjct: 197 E 197
|
Length = 235 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
SGGQ+QRI +ARA+ D D+ + D+P SA+D A + N
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN 195
|
Length = 327 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 27/205 (13%)
Query: 1186 RIKQFMHIPPEPPAIVEDK-----RPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTF 1240
RIK + PA V++ R P S P L+ K+ ++L I
Sbjct: 279 RIKMLERMELIAPAHVDNPFHFSFRAPESLP---NPLLKMEKVSAGYGDRIILDSIKLNL 335
Query: 1241 SEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI-LIDGVDICSMGLKDLRVKLSIIPQE 1299
G+R+G++GR G+GK+TLI L + P G I L G +KL Q
Sbjct: 336 VPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG------------IKLGYFAQH 383
Query: 1300 PTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359
F + + L L + E LE+ +L+ + + D V++E +S G++
Sbjct: 384 QLEFLRADESPLQHLARLAPQE----LEQ-KLRDYLGGFGFQGD-KVTEETRRFSGGEKA 437
Query: 1360 LFCLGRVLLKRNRILVLDEANASID 1384
L ++ +R +L+LDE +D
Sbjct: 438 RLVLALIVWQRPNLLLLDEPTNHLD 462
|
Length = 638 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 48/214 (22%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE---------IPKISGTVNLYG-- 658
+P LR V+L + + + + G G+GKS+LL ++ + V+L
Sbjct: 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83
Query: 659 ----------SIAYVSQ-TSWIQSGSIRDNIL-----YGKPMDKARYDKAIKACALDKDI 702
+I YVSQ I S D + G P + AR KA L +
Sbjct: 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVAR----AKAADLLTRL 139
Query: 703 NNFDHGDLTEIGQRGLNL-----SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
N + +R +L SGG++QR+ +AR D I L D+P +++DA A
Sbjct: 140 N---------LPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAV 190
Query: 758 LFNECVMAALEKKTVIL-VTHQVEFLSEV-DRIL 789
+ E + A + ++ + H E V DR+L
Sbjct: 191 VV-ELIREAKARGAALVGIFHDEEVREAVADRLL 223
|
Length = 235 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 46/230 (20%)
Query: 1231 LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM-GLKDL 1289
L + + E V ++G G+GKTT+ + L +P GG+IL+ G I + G +
Sbjct: 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA 78
Query: 1290 RVKLSIIPQEPTLFRG-------------SVRTNLDPLGLY-------SDDE------IW 1323
R+ + Q LFR ++T L GL ++ E W
Sbjct: 79 RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFS-GLLKTPAFRRAESEALDRAATW 137
Query: 1324 KALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASI 1383
LE+ L N+ + N + GQ++ + R ++ + IL+LDE A +
Sbjct: 138 --LERVGLL----EHANR-------QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGL 184
Query: 1384 DSATDAILQRII---RQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLL 1429
+ L +I R E N TV+ + H + V+ SD + V++ G L
Sbjct: 185 NPKETKELDELIAELRNEH-NVTVLLIEHDMKLVMGISDRIYVVNQGTPL 233
|
Length = 255 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 33/221 (14%)
Query: 604 WDP-ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-KISGTVNLYG-SI 660
WD + V+ ++ + + V G VGAG++ L+ A+ G P K G V + G +
Sbjct: 266 WDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV 325
Query: 661 AYVSQTSWIQSGSI-------RDNIL----YGKPMD---------KARYDKAIKACALDK 700
+ I++G R I+ GK + K R D A + +
Sbjct: 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGS 385
Query: 701 DINNFD----HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAA 756
I L IG+ LSGG +Q+ LA+ + + + + D+P VD
Sbjct: 386 AIQRLKVKTASPFLP-IGR----LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKY 440
Query: 757 TLFNECVMAALEKKTVILVTHQV-EFLSEVDRILVLEGGQI 796
++ A E +I+V+ ++ E L DR+LV+ G++
Sbjct: 441 EIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 23/210 (10%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWI 669
L VNL I+ A G G+GKS+++ + G G+V + I S+ I
Sbjct: 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80
Query: 670 QSGSIRDNILYGKPMDKARYDKAIKACAL--------DKDINNFDHGDLTEIG------- 714
+ + +++ P + + +K A ++ L +G
Sbjct: 81 KQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFE 140
Query: 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA---HTAATLFNECVMAALEKKT 771
+ LSGGQ +R+ +A + + I + D+P + +D TLF + + + T
Sbjct: 141 KNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGM---T 197
Query: 772 VILVTHQVEFLSE-VDRILVLEGGQITQSG 800
++LVTH ++ ++ D + VLE G++ SG
Sbjct: 198 IVLVTHLMDDVANYADFVYVLEKGKLVLSG 227
|
Length = 280 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 14/103 (13%)
Query: 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFL 782
G K R+ LA+A++++ DI L D+P + +D +T L E V+ T+I+++H FL
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWL--EDVLNE-RNSTMIIISHDRHFL 215
Query: 783 SEV-----DRILVLEGGQIT-QSGNYQELLLAGT-AFEQLVNA 818
+ V D L+ G++ GNY E + A T A E+L+
Sbjct: 216 NSVCTHMAD----LDYGELRVYPGNYDEYMTAATQARERLLAD 254
|
Length = 530 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 38/228 (16%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650
SD + +IQE L GV + +AV G G+GKS+LL A+ G I
Sbjct: 72 SDETRQIQERTI----------LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN 121
Query: 651 SGTVNLYGSIAYVSQTSWIQSGSI-RDNILYGK---------------PMDKARYDKAIK 694
+ T + + ++ ++G + +D+ILY P + +K +
Sbjct: 122 NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILV 181
Query: 695 ACALDKDINNFDHGDLTEIGQ---RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751
A ++ ++ + T IG RG+ SGG+++R+ +A + + + + D+P S +D
Sbjct: 182 AESVISELGLTKCEN-TIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
Query: 752 AHTAATLFNECVMAALEKKTVILVTHQVEFLSEV----DRILVLEGGQ 795
A A L A + KT++ HQ S V D +LVL G+
Sbjct: 239 ATAAYRLVLTLGSLAQKGKTIVTSMHQPS--SRVYQMFDSVLVLSEGR 284
|
Length = 659 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 38/198 (19%)
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWIQSG---------------- 672
G VGAG+S L+ + G + +G V L G I S I++G
Sbjct: 286 GLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345
Query: 673 -SIRDNILYGKPMDKARYDKAIKACALD--KDINNFDH--GDLT----EIGQRGLNLSGG 723
S+ DNI AR C ++ + N D L Q +NLSGG
Sbjct: 346 HSVADNINIS-----ARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGG 400
Query: 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS 783
+Q+ L R + D + L D+P +D ++N A + V+ V+ L
Sbjct: 401 NQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSD---LP 457
Query: 784 EV----DRILVLEGGQIT 797
EV DRI+V+ G+I
Sbjct: 458 EVLGVADRIVVMREGRIA 475
|
Length = 501 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 22/170 (12%)
Query: 630 GSVGAGKSSLLYAILGEIPKISGTVNLYGS------IAYVSQTSWI--QSG-----SIRD 676
GS GAGK++LL I G + G + Y Q ++ +SG ++R+
Sbjct: 34 GSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRE 93
Query: 677 NILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN 736
N LY A + + F L + GL LS GQK+++ L R +
Sbjct: 94 NCLYDIHFSPG-------AVGITELCRLFSLEHLIDY-PCGL-LSSGQKRQVALLRLWMS 144
Query: 737 DADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVD 786
A ++L D+P A+D + T+ + + V+L +HQ L++ D
Sbjct: 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--------- 659
P ++ + + + V G GAGK++LL + G + SG + + G
Sbjct: 23 EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSR 82
Query: 660 -IAYVSQTSWI-QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
+AY+ + S +N+ + + R K + AL + + D T + Q
Sbjct: 83 FMAYLGHLPGLKADLSTLENLHFLCGL-HGRRAKQMPGSAL-AIVGLAGYED-TLVRQ-- 137
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVT 776
LS GQK+R+ LAR + A ++L D+P++ +D TL N + A L LVT
Sbjct: 138 --LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE-GITLVNRMISAHLRGGGAALVT 193
|
Length = 214 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 29/214 (13%)
Query: 1239 TFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG---GSILIDGVDICSMGLKDL-RV--- 1291
+ G +G+VG +GSGK+ AL L+ G GS +G +I ++ K+L ++
Sbjct: 38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAE 97
Query: 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDD--EIWKALEKCQLKTTISSLPNKLDSSVSDE 1349
++S+I Q+P T+L+P + E+ + LD+ E
Sbjct: 98 QISMIFQDPM-------TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE 150
Query: 1350 GEN--------WSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA-ILQRI--IRQE 1398
+S G RQ + LL R ++L+ DE ++D A I+ + +++E
Sbjct: 151 ARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE 210
Query: 1399 FSNCTVITVAHRVPTVIDS-DMVMVLSYGKLLEY 1431
F N +I + H + V D V+V+ G+ +EY
Sbjct: 211 F-NTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243
|
Length = 330 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 0.002
Identities = 58/225 (25%), Positives = 86/225 (38%), Gaps = 61/225 (27%)
Query: 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNL---YGSIAYVSQ--------TSW--IQS 671
KI V G GAGKS+LL + G + G + Y+ Q T ++
Sbjct: 35 KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGI-KVGYLPQEPQLDPEKTVRENVEE 93
Query: 672 G--SIRD--------NILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR----- 716
G ++ Y +P +D ++I D D ++ +
Sbjct: 94 GVAEVKAALDRFNEIYAAYAEPDAD--FDALAAEQGELQEI--IDAADAWDLDSQLEIAM 149
Query: 717 -GL----------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
L LSGG+++R+ L R + D+ L D+P + +DA E V A
Sbjct: 150 DALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDA--------ESV-A 200
Query: 766 ALE------KKTVILVTHQVEFLSEV-DRILVLEGGQ-ITQSGNY 802
LE TV+ VTH FL V IL L+ G+ I GNY
Sbjct: 201 WLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNY 245
|
Length = 556 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 26/212 (12%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I + + + +R N L+ + T G+ +VG GSGK+TL AL V A G I
Sbjct: 7 IVVNDVTVTWR-NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKIS 65
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQE-------PTLFRGSVRTNLDPLGLYSDDEIWKALEK 1328
I G K+L ++ +PQ P L V +G Y W K
Sbjct: 66 ILGQPTRQALQKNL---VAYVPQSEEVDWSFPVLVEDVVM-----MGRYGHMG-WLRRAK 116
Query: 1329 CQLKTTISSLPNKLDSSVSDE---GENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDS 1385
+ + +++ ++D GE S GQ++ L R + ++ ++++LDE +D
Sbjct: 117 KRDRQIVTAALARVDMVEFRHRQIGE-LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDV 175
Query: 1386 ATDA---ILQRIIRQEFSNCTVITVAHRVPTV 1414
T+A L R +R E T++ H + +V
Sbjct: 176 KTEARIISLLRELRDE--GKTMLVSTHNLGSV 205
|
Length = 272 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.003
Identities = 57/235 (24%), Positives = 91/235 (38%), Gaps = 38/235 (16%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
R+ L LK P + + I+ + G VG+ G G+G++ L+ L+ G +
Sbjct: 257 RLRLDGLK------GPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV 310
Query: 1275 LIDGVDICSMGLKDL-----------RVKLSIIPQEPTLFRGSVRTNLD--------PLG 1315
+DG I +D R IIP SV N++ G
Sbjct: 311 YLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH------SVADNINISARRHHLRAG 364
Query: 1316 LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILV 1375
++ W E I SL K S N S G +Q LGR L + ++++
Sbjct: 365 CLINNR-W---EAENADRFIRSLNIKTPSREQLIM-NLSGGNQQKAILGRWLSEDMKVIL 419
Query: 1376 LDEANASID-SATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKL 1428
LDE ID A I I V+ V+ +P V+ +D ++V+ G++
Sbjct: 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRI 474
|
Length = 501 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.004
Identities = 37/186 (19%), Positives = 75/186 (40%), Gaps = 38/186 (20%)
Query: 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-------LRVKLSIIPQ 1298
+ +G +G GK+TL+ R+ + G+ + + + D LR ++ ++ Q
Sbjct: 49 IAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQ 108
Query: 1299 EPTLFRGSV-------------RTNLDPLGLYS--DDEIWKALEKCQLKTTISSLPNKLD 1343
P F S+ + NLD L S IW ++
Sbjct: 109 RPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIW----------------EEVK 152
Query: 1344 SSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCT 1403
+ ++G S GQ+Q C+ R + + +L++DE +++D + ++ + + T
Sbjct: 153 DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYT 212
Query: 1404 VITVAH 1409
+I V H
Sbjct: 213 IIMVTH 218
|
Length = 274 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.004
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 9/186 (4%)
Query: 1248 VVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LRVKLSIIPQEPTLFRG- 1305
++G G+GK+TL+ LF + + GSIL G +I K+ L +S++ QE L
Sbjct: 29 LMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88
Query: 1306 SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVS--DEGENWSAGQRQLFCL 1363
SV N+ LG Y ++ +K T ++ ++LD + + S Q Q+ +
Sbjct: 89 SVMDNM-WLGRYPTKGMFVDQDKMYRDT--KAIFDELDIDIDPRAKVATLSVSQMQMIEI 145
Query: 1364 GRVLLKRNRILVLDEANASIDSATDAILQRIIRQ-EFSNCTVITVAHRVPTVID-SDMVM 1421
+ +I+++DE +S+ L IIR+ + C ++ ++H++ + D +
Sbjct: 146 AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEIT 205
Query: 1422 VLSYGK 1427
+L G+
Sbjct: 206 ILRDGQ 211
|
Length = 491 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.004
Identities = 61/235 (25%), Positives = 88/235 (37%), Gaps = 60/235 (25%)
Query: 1224 RYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT--------LISALFRLVEPAG---- 1271
RY N L G+ EG G++G G GKTT LI L E
Sbjct: 82 RYGVNG-FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEV 139
Query: 1272 -----GSILIDGVDICSMGLKDLRVKLSIIPQE----PTLFRGSVR---TNLDPLGLYSD 1319
G+ L + L + +K+ PQ P +F+G VR +D G
Sbjct: 140 LKRFRGTELQNYFK----KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKL-- 193
Query: 1320 DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEA 1379
DE+ + L L N LD +S S G+ Q + LL+ DE
Sbjct: 194 DEVVERLG----------LENILDRDIS----ELSGGELQRVAIAAALLRDADFYFFDEP 239
Query: 1380 NASIDSATDAILQRI-----IRQEFSNCTVITVAHRVPTVID--SDMVMVLSYGK 1427
+ +D I QR+ IR+ V+ V H + V+D +D V + YG+
Sbjct: 240 TSYLD-----IRQRLNVARLIRELAEGKYVLVVEHDL-AVLDYLADNVHIA-YGE 287
|
Length = 590 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 13/199 (6%)
Query: 626 IAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIR--DNILYGKP 683
I + G G+GKS+L I G + G V+ G ++ ++ ++ + SG + +NI + K
Sbjct: 53 IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGL-SGQLTGIENIEF-KM 110
Query: 684 MDKARYDKAIKACALDKDINNFDHGDLTE-IGQRGLNLSGGQKQRIQLARAVYNDADIYL 742
+ K IK A+ I F +L E I Q S G + ++ + + + DI +
Sbjct: 111 LCMGFKRKEIK--AMTPKIIEFS--ELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILV 166
Query: 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801
D+ S D A ++ + KT+ V+H + + + +I +EGG++ G
Sbjct: 167 IDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGE 226
Query: 802 YQELLLAGTAFEQLVNAHR 820
++L +E +N +
Sbjct: 227 LDDVL---PKYEAFLNDFK 242
|
Length = 264 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1467 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-267 Score=2540.36 Aligned_cols=1248 Identities=46% Similarity=0.756 Sum_probs=1156.7
Q ss_pred CCCCccCCh--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 000481 197 QTELGKAGL--LRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNV 274 (1467)
Q Consensus 197 ~~p~~~a~~--~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~ 274 (1467)
++|.+.++. +|++||||++|++++|||++|+.+|+|+++++|+++.+.++|++.|+++.++. ++.|+++++++++
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~---~~~psl~~al~~~ 198 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRS---GKKPSLLRALLRT 198 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccc---cCCcHHHHHHHHH
Confidence 344445555 99999999999999999999999999999999999999999999999886432 2568899999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1467)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~ 354 (1467)
|++.+++.+++.++.+...+++|.+++.+++|.++++.+.+.|+.++++++++.++++++.++|++..+++|+|+|+++.
T Consensus 199 f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~ 278 (1381)
T KOG0054|consen 199 FGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALI 278 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999987766778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLN 434 (1467)
Q Consensus 355 ~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~ 434 (1467)
++||+|+|+++..+++++++|+|+|+|++|++++.+++.++|.+|++|+|+++++++||..+|+++++|++++++++|+|
T Consensus 279 ~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n 358 (1381)
T KOG0054|consen 279 SAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLN 358 (1381)
T ss_pred HHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTII 514 (1467)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~~~ 514 (1467)
.+++++++++|++.|+.+|+|++.|+|+|+|||+||+|+||+.|.++|++.|++|++++|+..+..++..++++++|+++
T Consensus 359 ~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 359 SFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCc
Q 000481 515 SSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1467)
Q Consensus 515 ~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1467)
++++|++|++..++.+|++++|+++++|++|+.|+.++|+.++.+.|+.||++|+++||..+|.+++...+.+..+.+.+
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~ 518 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENA 518 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCce
Confidence 99999999964458899999999999999999999999999999999999999999999999987665443334445668
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEccCCcCCCCCH
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSI 674 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~ti 674 (1467)
|+++|++|+|+++++.++|+||||+|++|+++||||++||||||||++|+||+++.+|+|.++|.+|||||+|||||+||
T Consensus 519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTv 598 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTV 598 (1381)
T ss_pred EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcH
Confidence 99999999999865667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHH
Q 000481 675 RDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1467)
Q Consensus 675 ~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~ 754 (1467)
||||+||.|+|+++|++++++|+|++|++.||.||+|+|||||.||||||||||+||||+|+|+||||||||+||||+|+
T Consensus 599 reNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahv 678 (1381)
T KOG0054|consen 599 RENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHV 678 (1381)
T ss_pred HHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCC
Q 000481 755 AATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQ 834 (1467)
Q Consensus 755 ~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1467)
++|||++|+++.+++||+|+|||+++++++||+|++|+||+|.+.|+|+|+++.+..+.++..+...........+ .
T Consensus 679 g~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~-~-- 755 (1381)
T KOG0054|consen 679 GKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEEASEK-D-- 755 (1381)
T ss_pred hHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccccccc-c--
Confidence 9999999999999999999999999999999999999999999999999999999888887432221111100000 0
Q ss_pred CCcccccccCCCCCCCCCCCCCCCCCCcc-cccccccCCcchHHHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 000481 835 GGAEKVEKGRTARPEEPNGIYPRKESSEG-EISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFV 913 (1467)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~ 913 (1467)
.+..+.. ...+.......+...+. ....+...++.++|+++.|.|+|++|+.|+++.+|+..+.+.+++.++.+
T Consensus 756 --~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~ 830 (1381)
T KOG0054|consen 756 --LESGESS---RESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQ 830 (1381)
T ss_pred --ccccccc---cchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 0000000 00000000000000000 00111124566788889999999999999999788888887888888999
Q ss_pred HhhhhhhHHHHhhcccCc------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 000481 914 GLQAAATYWLAYAIQIPK------ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD 987 (1467)
Q Consensus 914 ~~~~~~~~wl~~~~~~~~------~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd 987 (1467)
++..+++||+++|++... .+..+|+++|++++++.+++.+++++.+...+.++|+++|++|+++++|+||+|||
T Consensus 831 ~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd 910 (1381)
T KOG0054|consen 831 VLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD 910 (1381)
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC
Confidence 999999999999997642 35678999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000481 988 STPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRING 1067 (1467)
Q Consensus 988 ~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~ 1067 (1467)
+||+|||+||||+|++.+|..+|..+..++.+++.++++++++++++|+++++++|+.++++++++||++++||++|+++
T Consensus 911 tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLes 990 (1381)
T KOG0054|consen 911 TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLES 990 (1381)
T ss_pred CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 000481 1068 TTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGY 1147 (1467)
Q Consensus 1068 ~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~ 1147 (1467)
.+|||+++||+||++|+.|||||+++++|.+++.+++|.+++++|...+++||+++|+|++++++++++++++++...+.
T Consensus 991 itRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~ 1070 (1381)
T KOG0054|consen 991 ITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL 1070 (1381)
T ss_pred cccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888776655
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCC
Q 000481 1148 VAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRP 1227 (1467)
Q Consensus 1148 ~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~ 1227 (1467)
.+||.+|++++|++++++.++|++|+.+++|++|+||||+.||.++|+|+|+..+..+||++||++|+|+|+|+++||+|
T Consensus 1071 ~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp 1150 (1381)
T KOG0054|consen 1071 ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP 1150 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC
Confidence 78999999999999999999999999999999999999999999999997777766669999999999999999999999
Q ss_pred CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccch
Q 000481 1228 NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSV 1307 (1467)
Q Consensus 1228 ~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTI 1307 (1467)
+.|+|||||||+|+||||||||||||||||||+++|||+.||.+|+|.|||+||+++++|+||++++||||||+||+||+
T Consensus 1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTv 1230 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTV 1230 (1381)
T ss_pred CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 000481 1308 RTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSAT 1387 (1467)
Q Consensus 1308 R~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~T 1387 (1467)
|+||||+++|+|+|||+|||+|+|+++|+++|+|||++|.|+|+|||.||||++||||||||++||||||||||++|++|
T Consensus 1231 R~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~T 1310 (1381)
T KOG0054|consen 1231 RFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPET 1310 (1381)
T ss_pred ccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhc-cCChhHHHHHHHHHhc
Q 000481 1388 DAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME-TNSSFSKLVAEYWSSC 1455 (1467)
Q Consensus 1388 e~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f~~lv~~~~~~~ 1455 (1467)
|..||++||++|+|||||+||||++||+|||||+|||+|+|+|+|+|++|++ ++|.|++++.++...+
T Consensus 1311 D~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~~~~ 1379 (1381)
T KOG0054|consen 1311 DALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAALSS 1379 (1381)
T ss_pred HHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999998 7899999998887654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-214 Score=2170.13 Aligned_cols=1414 Identities=31% Similarity=0.519 Sum_probs=1165.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCCcccc-hhHHHHHHHHHHHHHHHHHHHHHH---HhhhccC-Cc
Q 000481 22 GSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKN-HNYGRIRR-ECVSIVVSACCAVVGIAYLGYCLW---NLIAKND-SS 95 (1467)
Q Consensus 22 ~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~ 95 (1467)
.||||++++++|+|++|+|+++|.+++.. ++. +..++.++ .+.+....++........++..+. ....+.. ..
T Consensus 29 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (1622)
T PLN03130 29 YTPCATDSLVINISHLVLLGLCLYRIWLI-KKDHKVQRFCLRSKWYNYFLALLAAYCTAEPLFRLVMGISVLNLDGQTSL 107 (1622)
T ss_pred CCccHHhhHHHHHHHHHHHHHHHHHHHHh-ccccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 39999999999999999999999888743 331 22222222 222222222211111111111111 1100111 10
Q ss_pred chh-HH-HHHHHHHHHHHHHHHH---Hh--hccchhHHHHHHHHHH---HHHHHHHHHHHHHhhcccccccchhHhHHHH
Q 000481 96 MSW-LV-STVRGLIWVSLAISLL---VK--RSKWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLL 165 (1467)
Q Consensus 96 ~~~-~~-~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1467)
... .. .....++|+.+.+++. .+ +.+...+.+++||++. +++.........+.... ...++..+.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 186 (1622)
T PLN03130 108 PPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLVLSVKEYYSSFV-LYLYISEVAAQVL 186 (1622)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHHHHHHHHHhccc-cceehhHHHHHHH
Confidence 111 11 2234455553332222 11 2233446678899887 33322222222222110 1224444444443
Q ss_pred HHHHH-hhcc-cCCCCCCC------CCCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCcc
Q 000481 166 LLFSA-FRNF-SHFTSPNR------EDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPE 237 (1467)
Q Consensus 166 ~~~~~-~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~ 237 (1467)
+.+.. +... .+...+.. ..+..+++...+++++||++||++||++|||++|++++|||++|+.+|||+++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~ 266 (1622)
T PLN03130 187 FGILLLVYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTW 266 (1622)
T ss_pred HHHHHHHHHhcCCCCcccccccccccccccccCCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChh
Confidence 32222 1111 11111110 0112344445567789999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHH
Q 000481 238 DEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEG 317 (1467)
Q Consensus 238 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~ 317 (1467)
|+++.+.++|++.|+++.++ ++++++++++++|++.++..+++.++..++.+++|++++.+++++.+++. .+.+
T Consensus 267 ~~~~~~~~~~~~~w~~~~~~-----~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~-~~~~ 340 (1622)
T PLN03130 267 DQTETLYRSFQKCWDEELKK-----PKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP-AWIG 340 (1622)
T ss_pred hhHHHHHHHHHHHHHHHhcc-----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chHH
Confidence 99999999999999876422 34789999999999999999999999999999999999999999865432 2446
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHH
Q 000481 318 LSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHL 397 (1467)
Q Consensus 318 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~ 397 (1467)
+.++++++++.++.+++.+++++...+++.++|..++..+|+|.++++...+++.++|+++|+|++|++++.++...+|.
T Consensus 341 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~ 420 (1622)
T PLN03130 341 YIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHT 420 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666777878889999999999999999999999999999999999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHH
Q 000481 398 TWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEK 477 (1467)
Q Consensus 398 ~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~ 477 (1467)
+|..|++++++++++|..+|+++++|++++++++|++..+++++++.+++.++.+|+|++.++|+++|||+||+|+||+.
T Consensus 421 l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~ 500 (1622)
T PLN03130 421 LWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENS 500 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 478 FKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALS 557 (1467)
Q Consensus 478 f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~ 557 (1467)
|.+++++.|++|++..++..+...+..+++...|.++++++|+++.+.+ +.+|++.+|+++++++.+..|+..+|..+.
T Consensus 501 ~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~-g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~ 579 (1622)
T PLN03130 501 FQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLG-GDLTPARAFTSLSLFAVLRFPLFMLPNLIT 579 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888777777777767777777777777776664 899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChH
Q 000481 558 IMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKS 637 (1467)
Q Consensus 558 ~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKS 637 (1467)
.+.++++|++||++|+..+|..+... .+.......|+++|++|+|++++++++|+|+||+|++|++++|+||+|||||
T Consensus 580 ~~~~a~~s~~RI~~~L~~~e~~~~~~--~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKS 657 (1622)
T PLN03130 580 QAVNANVSLKRLEELLLAEERVLLPN--PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKT 657 (1622)
T ss_pred HHHHHHHHHHHHHHHHcCcccccccC--CcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHH
Confidence 99999999999999998765432111 0111123479999999999865456899999999999999999999999999
Q ss_pred HHHHHHhCCCCCCC-cEEEEcCeEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000481 638 SLLYAILGEIPKIS-GTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1467)
Q Consensus 638 TLl~~l~g~~~~~~-G~i~~~g~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~ 716 (1467)
||+++|+|+++|.+ |+|.++++||||+|+||+|++||||||+||+++++++|++++++|+|++|++.||+||+|+|||+
T Consensus 658 TLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~ 737 (1622)
T PLN03130 658 SLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGER 737 (1622)
T ss_pred HHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCC
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeE
Q 000481 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1467)
Q Consensus 717 g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1467)
|.+|||||||||+||||+|++||||||||||||||++++++++++++++.+++||+|+|||+++.++.||+|++|++|+|
T Consensus 738 G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 738 GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMI 817 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999999887889999999999999999999999999999
Q ss_pred eEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchH
Q 000481 797 TQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTED 876 (1467)
Q Consensus 797 ~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (1467)
++.|+|+|+++.++.|.++...+.......+. ......++.+. ............. ..+..+........+.++
T Consensus 818 ~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 891 (1622)
T PLN03130 818 KEEGTYEELSNNGPLFQKLMENAGKMEEYVEE---NGEEEDDQTSS--KPVANGNANNLKK-DSSSKKKSKEGKSVLIKQ 891 (1622)
T ss_pred EEeCCHHHHHhcchhHHHHHHhcccccccccc---ccccccccccc--ccccccccccccc-cccccccccccchhhhhH
Confidence 99999999999888888887653321100000 00000000000 0000000000000 000000000011234566
Q ss_pred HHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccC---ccchhHHHHHHHHHHHHHHHHHH
Q 000481 877 EEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP---KITSGILIGVYAGVSTASAVFVY 953 (1467)
Q Consensus 877 e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~---~~~~~~~~~~y~~l~~~~~~~~~ 953 (1467)
|+++.|.++|++|+.|+++.++.+.+.+++++.+...++..++++|++.|.+.. ......++++|++++++..++.+
T Consensus 892 e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~ 971 (1622)
T PLN03130 892 EERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTL 971 (1622)
T ss_pred HHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999866655555555556666777788999999998642 12345678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 954 FRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFV 1033 (1467)
Q Consensus 954 ~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~ 1033 (1467)
++.++..+.+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.
T Consensus 972 ~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~ 1051 (1622)
T PLN03130 972 LNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIV 1051 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Q 000481 1034 TWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFH 1113 (1467)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~ 1113 (1467)
+|..+++++|+.+++++++++|.+++|+++|++.++++|+++|+.|+++|+.|||+|+++++|.+++.+..|.+.+..+.
T Consensus 1052 ~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~ 1131 (1622)
T PLN03130 1052 STISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLV 1131 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777788888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000481 1114 TNGVMEWLILRVEALQNLTLFTAALFLVLIPRGY-----VAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIK 1188 (1467)
Q Consensus 1114 ~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~ 1188 (1467)
....++|+++++++++.+++++.+.+.+.. .+. ..++.+|++++|++.++..+.++.+.+..+|+.++|+||+.
T Consensus 1132 ~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~-~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~ 1210 (1622)
T PLN03130 1132 NMSSNRWLAIRLETLGGLMIWLTASFAVMQ-NGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 1210 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877666555443322 221 12688999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC
Q 000481 1189 QFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1467)
Q Consensus 1189 ~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~ 1268 (1467)
+|.+.|+|++...++..+++.||.+|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||||||+++|+|+|+
T Consensus 1211 e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130 1211 TYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred HHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 99999988765434445667899999999999999999887789999999999999999999999999999999999999
Q ss_pred CCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCccccccc
Q 000481 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSD 1348 (1467)
Q Consensus 1269 ~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e 1348 (1467)
|++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|+|+||++++++++|.++|+||||+|+|
T Consensus 1291 p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge 1370 (1622)
T PLN03130 1291 LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSE 1370 (1622)
T ss_pred CCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEE
Q 000481 1349 EGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKL 1428 (1467)
Q Consensus 1349 ~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~i 1428 (1467)
+|.||||||||||||||||||+|+|||||||||+||.+||+.||++|++.+++||+|+||||++||++||||+|||+|+|
T Consensus 1371 ~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~I 1450 (1622)
T PLN03130 1371 AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRV 1450 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhHHhcc-CChhHHHHHHHHH
Q 000481 1429 LEYDEPSKLMET-NSSFSKLVAEYWS 1453 (1467)
Q Consensus 1429 vE~g~p~~Ll~~-~~~f~~lv~~~~~ 1453 (1467)
+|+|+|+||+++ +|.|++|+++...
T Consensus 1451 vE~Gt~~eLl~~~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1451 VEFDTPENLLSNEGSAFSKMVQSTGA 1476 (1622)
T ss_pred EEeCCHHHHHhCCCCHHHHHHHHcCh
Confidence 999999999995 7999999987664
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-209 Score=2128.83 Aligned_cols=1410 Identities=30% Similarity=0.507 Sum_probs=1154.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCcccc-hhHHHHHHHHHHHHHHHHHHHHHH---HhhhccCCc-ch
Q 000481 23 SFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGRIRR-ECVSIVVSACCAVVGIAYLGYCLW---NLIAKNDSS-MS 97 (1467)
Q Consensus 23 ~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~ 97 (1467)
|||||+++++|+|++|+|+++|.+++..+++++...+.++ .+.+....++........++..+. ...-+.... ..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (1495)
T PLN03232 30 TPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEPVLRLVMGISLFDMDEETDLPP 109 (1495)
T ss_pred CccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 8999999999999999999999888754322222233222 222222222222222211211111 110001100 01
Q ss_pred h-HH-HHHHHHHHHHHHHHH--H-Hh--hccchhHHHHHHHHHH---HHHHHHHHHHHHHhhcccccccchhHhHHHHHH
Q 000481 98 W-LV-STVRGLIWVSLAISL--L-VK--RSKWIRMLITLWWMSF---SLLVLALNIEILARTYTINVVYILPLPVNLLLL 167 (1467)
Q Consensus 98 ~-~~-~~~~~~~~~~~~~~~--~-~~--~~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1467)
. .. .....++|+.+.+++ . .+ +.+...+.+++||++. .++.............. ...++..+.+.+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 188 (1495)
T PLN03232 110 FEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVLPLKNSINRTA-LYLCISSRCCQALFG 188 (1495)
T ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHHHHHHHHHHhccc-cceehhHHHHHHHHH
Confidence 1 11 222344444322222 1 22 2233446678899887 33322222221221100 122444444443322
Q ss_pred HHH-hhcc-cCCCCCCCC-------CCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccC
Q 000481 168 FSA-FRNF-SHFTSPNRE-------DKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPED 238 (1467)
Q Consensus 168 ~~~-~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~ 238 (1467)
+.. +... .+.. +... ++..++..+.+.+++||+++|+|||+||||++|++++|||++|+.+|||+|+++|
T Consensus 189 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~ 267 (1495)
T PLN03232 189 ILLLVYIPELDPY-PGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWD 267 (1495)
T ss_pred HHHHHhcccCCCC-CcccccccccccccccccccccCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhh
Confidence 222 1111 1111 1000 0000111112456789999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHH
Q 000481 239 EASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGL 318 (1467)
Q Consensus 239 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~ 318 (1467)
+++.++++|++.|+++.+ .++++++++++++|++.++..+++.++.+++.+++|++++.+++++.+++. .+.++
T Consensus 268 ~~~~~~~~~~~~w~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~-~~~~~ 341 (1495)
T PLN03232 268 QTETLIKRFQRCWTEESR-----RPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP-AWVGY 341 (1495)
T ss_pred hHHHHHHHHHHHHHHhhc-----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cchHH
Confidence 999999999999987542 134789999999999999999999999999999999999999999865432 24567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHH
Q 000481 319 SIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLT 398 (1467)
Q Consensus 319 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~ 398 (1467)
.++++++++.++.+++.+++++...+++.++|..++..+|+|.++++...+++.++|+++|+|++|++++.++...+|.+
T Consensus 342 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l 421 (1495)
T PLN03232 342 VYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGL 421 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888888888888899999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHH
Q 000481 399 WSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKF 478 (1467)
Q Consensus 399 ~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f 478 (1467)
|..|++++++++++|..+|++++++++++++++|++..+++++++.+++.++.+|+|.+.++|+++|||+||+|+||+.+
T Consensus 422 ~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~ 501 (1495)
T PLN03232 422 WSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSF 501 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999998888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 479 KSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSI 558 (1467)
Q Consensus 479 ~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~ 558 (1467)
.+++++.|++|++..++......+..+++...|.++.+++|+++... ++.+|++.+|+++++++.+..|+..+|..+..
T Consensus 502 ~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~-~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~ 580 (1495)
T PLN03232 502 ESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLL-GGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQ 580 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888777666666666666776666677666655 48899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHH
Q 000481 559 MIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSS 638 (1467)
Q Consensus 559 ~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKST 638 (1467)
+.++++|++||++|++.++...+.. .........|+++|++|+|++++++++|+|+||+|++||+++|+||+||||||
T Consensus 581 ~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKST 658 (1495)
T PLN03232 581 VVNANVSLQRIEELLLSEERILAQN--PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTS 658 (1495)
T ss_pred HHHHHHHHHHHHHHHcCcccccccc--CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHH
Confidence 9999999999999997665321111 11111234799999999998644568999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCcE-EEEcCeEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCC
Q 000481 639 LLYAILGEIPKISGT-VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1467)
Q Consensus 639 Ll~~l~g~~~~~~G~-i~~~g~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g 717 (1467)
|+++|+|+++|.+|. +.++++||||+|+||+|++||||||+||+++++++|++++++|++++|++.+|+||+|+|||+|
T Consensus 659 Ll~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G 738 (1495)
T PLN03232 659 LISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERG 738 (1495)
T ss_pred HHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCC
Confidence 999999999999975 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEe
Q 000481 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1467)
Q Consensus 718 ~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1467)
.+|||||||||+||||+|++||||||||||||||++++++++++++.+.+++||+|+|||+++.++.||+|++|++|+|+
T Consensus 739 ~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~ 818 (1495)
T PLN03232 739 VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIK 818 (1495)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999988878899999999999999999999999999999
Q ss_pred EecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHH
Q 000481 798 QSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDE 877 (1467)
Q Consensus 798 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 877 (1467)
+.|+|+|+++.++.|.++.+.+........ +. ...+....... ..+. .. ..+.....+...+....+.++|
T Consensus 819 ~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~--~~---~~~~~~~~~~~-~~~~--~~-~~~~~~~~~~~~~~~~~~~~~e 889 (1495)
T PLN03232 819 EEGTFAELSKSGSLFKKLMENAGKMDATQE--VN---TNDENILKLGP-TVTI--DV-SERNLGSTKQGKRGRSVLVKQE 889 (1495)
T ss_pred EecCHHHHHhcchhHHHHHHhccccccccc--cc---ccccccccccc-cccc--cc-cccccccccccccchhhhhhHH
Confidence 999999999988888888765432110000 00 00000000000 0000 00 0000000000000112345678
Q ss_pred HhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccC---ccchhHHHHHHHHHHHHHHHHHHH
Q 000481 878 EMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP---KITSGILIGVYAGVSTASAVFVYF 954 (1467)
Q Consensus 878 ~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~---~~~~~~~~~~y~~l~~~~~~~~~~ 954 (1467)
+++.|.++|++|+.|+++.++++.+.+++++.+...++..++++|++.|.+.. .....+|+++|++++++..++.++
T Consensus 890 ~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~ 969 (1495)
T PLN03232 890 ERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFT 969 (1495)
T ss_pred HHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999877655555555555666677788999999998643 223567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 000481 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVT 1034 (1467)
Q Consensus 955 ~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~ 1034 (1467)
+.++....+.++++++|++++++++++|++|||++|+|+++|||++|++.+|..++..+..++..++.+++.+++++..+
T Consensus 970 ~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~ 1049 (1495)
T PLN03232 970 NSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVS 1049 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1035 WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHT 1114 (1467)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~ 1114 (1467)
+..+++++|+.+++++++.+|.+++|+++|.+..+++|++++++|+++|+.|||+|+++++|.+++.+..|.+.+..+..
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 1129 (1495)
T PLN03232 1050 TISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLAN 1129 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888888888899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000481 1115 NGVMEWLILRVEALQNLTLFTAALFLVLIPRGYV-----APGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189 (1467)
Q Consensus 1115 ~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~ 1189 (1467)
...++|+.++++.++.++++..+.+.+. ..+.+ .++.+|++++|+..++.++.++++.+.++++.++|+||+.+
T Consensus 1130 ~~~~~wl~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e 1208 (1495)
T PLN03232 1130 TSSNRWLTIRLETLGGVMIWLTATFAVL-RNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGN 1208 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988776555444433332 22222 25678889999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC
Q 000481 1190 FMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP 1269 (1467)
Q Consensus 1190 ~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~ 1269 (1467)
|.+.|+|++...++..+++.||.+|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||||||+++|+|+++|
T Consensus 1209 ~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p 1288 (1495)
T PLN03232 1209 YIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL 1288 (1495)
T ss_pred HhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 99998886543333345667999999999999999988878899999999999999999999999999999999999999
Q ss_pred CcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccC
Q 000481 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDE 1349 (1467)
Q Consensus 1270 ~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~ 1349 (1467)
++|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+|+|+||+++++++++.++|+||||+|+|+
T Consensus 1289 ~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1289 EKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred CCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEE
Q 000481 1350 GENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLL 1429 (1467)
Q Consensus 1350 G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~iv 1429 (1467)
|.|||||||||+||||||||+|+|||||||||+||.+||+.||++|++.+++||+|+||||++|+++||||+|||+|+|+
T Consensus 1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~iv 1448 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVL 1448 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhHHhcc-CChhHHHHHHHHH
Q 000481 1430 EYDEPSKLMET-NSSFSKLVAEYWS 1453 (1467)
Q Consensus 1430 E~g~p~~Ll~~-~~~f~~lv~~~~~ 1453 (1467)
|+|+|+||+++ +|.|++|+++...
T Consensus 1449 E~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1449 EYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred EECCHHHHHhCCCCHHHHHHHHhCh
Confidence 99999999995 4799999987654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-207 Score=2109.41 Aligned_cols=1425 Identities=32% Similarity=0.537 Sum_probs=1166.0
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCc-ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-c
Q 000481 18 EFDLGSFCIQSTIIDVINLVFFCVFYLSLLVGSFRKNHNYGR-IRRECVSIVVSACCAVVGIAYLGYCLWNLIAKNDS-S 95 (1467)
Q Consensus 18 ~~~~~~~c~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 95 (1467)
.||| ||||++++++|+|+.++++++|+.++...+++..+.. ....+.+.....+..++.++.+.+.+|........ .
T Consensus 20 ~~d~-t~~f~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (1522)
T TIGR00957 20 NPDF-TKCFQNTVLAWVPCFYLWVCFPCYFLYLSRHDRGYIQMTHLNKTKTALGFLLWIVCWADLFYSFWERSHGRAPAP 98 (1522)
T ss_pred CCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 3778 9999999999999999999999877643222211111 11122222222222222222233334432111111 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHHH-HHHHHHHhhcc---cccccchhHhHHHHHHHH
Q 000481 96 MSWLVSTVRGLIWVSLAISLLVKRS--KWIRMLITLWWMSFSLLVLA-LNIEILARTYT---INVVYILPLPVNLLLLFS 169 (1467)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 169 (1467)
...+...+..++|+.+.+....++. ..++..+..||++..++... .+......... ...+....+...+.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1522)
T TIGR00957 99 VFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALVLS 178 (1522)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccccccceehhhHHHHHHHHHH
Confidence 1122334444555433222222222 22345667888876654332 11111111101 011111111221111111
Q ss_pred HhhcccCCCCCCCCCCCCCcccccccCCCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHH
Q 000481 170 AFRNFSHFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAY 249 (1467)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~ 249 (1467)
.+..... .+..+ ..++...+.+.+||++||++||++|||+||++++|||++|+.+|||+++++++++.++++|++
T Consensus 179 ~~~~~~~--~~~~~---~~~~~~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~ 253 (1522)
T TIGR00957 179 QLVLSCF--SDKSP---LFSETNHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVE 253 (1522)
T ss_pred HHHHHhh--cCCCC---ccccccccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHHHH
Confidence 1111000 00000 000101123468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc------------------------------------CCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000481 250 AWDSLVRENN------------------------------------SNNNGNLVRKVITNVYLKENIFIAICALLRTIAV 293 (1467)
Q Consensus 250 ~w~~~~~~~~------------------------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~ 293 (1467)
.|+++.++.+ ++.++++|+++++++|++.++..+++.++..++.
T Consensus 254 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~ 333 (1522)
T TIGR00957 254 NWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMM 333 (1522)
T ss_pred HHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9997642110 0123467999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC
Q 000481 294 VVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHS 373 (1467)
Q Consensus 294 ~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~l~l~~~~~~~~~ 373 (1467)
+++|++++.+++++.++..+...++.++++++++.++.+++.++|++...++++++|.+|+..+|+|+++++...+++.+
T Consensus 334 ~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~ 413 (1522)
T TIGR00957 334 FIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSST 413 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCC
Confidence 99999999999998654444456788888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 374 TGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQD 453 (1467)
Q Consensus 374 ~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 453 (1467)
+|+++|+|++|++++.++..++|.+|..|++++++++++|..+|++++++++++++++|++..+++++++.++++++.+|
T Consensus 414 ~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 493 (1522)
T TIGR00957 414 VGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKD 493 (1522)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCcH
Q 000481 454 ERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTG-SAPLNA 532 (1467)
Q Consensus 454 ~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~-~~~Lt~ 532 (1467)
+|++.++|+++|||+||+|+||+.|.+++++.|++|++..++..+...+..+.+...|+++.+++|++|.+.. ++.+++
T Consensus 494 ~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~ 573 (1522)
T TIGR00957 494 NRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDA 573 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCH
Confidence 9999999999999999999999999999999999999988887777766666777788888888887776654 468999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccc-cCCCCcEEEEeEEEEeCCCCCCC
Q 000481 533 STIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL-QKSDRSVKIQEGNFSWDPELAIP 611 (1467)
Q Consensus 533 ~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~-~~~~~~I~~~~~sf~~~~~~~~~ 611 (1467)
+.+|+++++++.++.|+..+|..+..+.++++|++||++||+.++.++...+.... ......|+++|++|+|+.+ +++
T Consensus 574 ~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~ 652 (1522)
T TIGR00957 574 EKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPP 652 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC-CCc
Confidence 99999999999999999999999999999999999999999876543321111111 1122479999999999743 357
Q ss_pred cccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHH
Q 000481 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDK 691 (1467)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~ 691 (1467)
+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+||||||+||++++||+|||.||.++++++|++
T Consensus 653 ~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~ 732 (1522)
T TIGR00957 653 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQ 732 (1522)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHH--HhcCC
Q 000481 692 AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM--AALEK 769 (1467)
Q Consensus 692 ~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~--~~~~~ 769 (1467)
++++|++.+|++.+|+||+|.+|++|.+|||||||||+||||+|++||++|||||||+||+++++++++.+.. +..++
T Consensus 733 ~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~ 812 (1522)
T TIGR00957 733 VLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKN 812 (1522)
T ss_pred HHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998874 45678
Q ss_pred cEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHHHHHhhhhccCCCCCCC--CC--CCCccc--cccc
Q 000481 770 KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDN--AG--QGGAEK--VEKG 843 (1467)
Q Consensus 770 ~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~--~~~~ 843 (1467)
+|+|+|||+++.++.||+|++|++|+|++.|+++++.+.++.|.++...+..........+. .. ....+. .+..
T Consensus 813 ~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1522)
T TIGR00957 813 KTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENG 892 (1522)
T ss_pred CEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhcccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999998888888877543221100000000 00 000000 0000
Q ss_pred -------CCCCCC-----CCCCCCC-CCCCCccc---cc-ccccCCcchHHHhhcCcccHHHHHHHHHhhchhHHHHHHH
Q 000481 844 -------RTARPE-----EPNGIYP-RKESSEGE---IS-VKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGV 906 (1467)
Q Consensus 844 -------~~~~~~-----~~~~~~~-~~~~~~~~---~~-~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~ 906 (1467)
.....+ ....... .+..+..+ .. .+...+..++|+++.|.|+|++|+.|+++.+ +..+++.+
T Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g-~~~~~~~~ 971 (1522)
T TIGR00957 893 MLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIG-LFITFLSI 971 (1522)
T ss_pred ccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcC-HHHHHHHH
Confidence 000000 0000000 00000000 00 0011234567778899999999999999764 44444444
Q ss_pred HHHHHHHHhhhhhhHHHHhhcccC-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000481 907 LAQSGFVGLQAAATYWLAYAIQIP-----KITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKA 981 (1467)
Q Consensus 907 ~~~~~~~~~~~~~~~wl~~~~~~~-----~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~ 981 (1467)
++.++..++..+.++|+++|.+.. .....+++++|++++++..++.+++.++....+.++++++|++++++++++
T Consensus 972 ~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~ 1051 (1522)
T TIGR00957 972 FLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRS 1051 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 555566777888999999998642 122356788999999999999998889999999999999999999999999
Q ss_pred cccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 982 PMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARE 1061 (1467)
Q Consensus 982 p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~ 1061 (1467)
|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.++++++.+|+++++++|+++++++++++|.+++|+
T Consensus 1052 p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 1131 (1522)
T TIGR00957 1052 PMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQ 1131 (1522)
T ss_pred ChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888888888888888999999999999
Q ss_pred HHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1062 LIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV 1141 (1467)
Q Consensus 1062 l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~ 1141 (1467)
++|++.++++|+++|+.|+++|+.|||+||++++|.+++.+.+|.+.+..+.....++|+..++++++.+++++++.+.+
T Consensus 1132 ~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 1211 (1522)
T TIGR00957 1132 LKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV 1211 (1522)
T ss_pred HHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988765554444333
Q ss_pred HhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEE
Q 000481 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQL 1221 (1467)
Q Consensus 1142 ~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nv 1221 (1467)
...+.+++|.+|++++|+..++.++.++++.++++|+.++|+||+.+|.+.|+|++...++..++..||.+|.|+|+||
T Consensus 1212 -~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nV 1290 (1522)
T TIGR00957 1212 -ISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNY 1290 (1522)
T ss_pred -HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEE
Confidence 3357789999999999999999999999999999999999999999999988876533334456678999999999999
Q ss_pred EEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCc
Q 000481 1222 KIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301 (1467)
Q Consensus 1222 s~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~ 1301 (1467)
+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++|++|+|+|||+||+++++++||++|++|||||+
T Consensus 1291 sf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~ 1370 (1522)
T TIGR00957 1291 CLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPV 1370 (1522)
T ss_pred EEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCc
Confidence 99998877789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q 000481 1302 LFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381 (1467)
Q Consensus 1302 LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs 1381 (1467)
||+||||+||||+++++|+|+|+||++|+++++|.++|+||||+|+|+|.|||||||||+||||||||+|+|||||||||
T Consensus 1371 LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTS 1450 (1522)
T TIGR00957 1371 LFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATA 1450 (1522)
T ss_pred ccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHH
Q 000481 1382 SIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451 (1467)
Q Consensus 1382 ~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~ 1451 (1467)
+||.+||+.||++|++.|++||+|+||||++|+++||||+|||+|+|+|+|+|+||++++|.|++|+++.
T Consensus 1451 alD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1451 AVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKDA 1520 (1522)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999889999998873
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-196 Score=1989.70 Aligned_cols=1245 Identities=28% Similarity=0.477 Sum_probs=1083.2
Q ss_pred CCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHh
Q 000481 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENNSNNNGNLVRKVITNVYL 276 (1467)
Q Consensus 197 ~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~l~~~~~ 276 (1467)
.+||++||++||++|||++|++++|||++|+.+|||+|+++++++.++++|++.|+++..++ .+.++|+++++++|+
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~L~~~l~~~~~ 79 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASA---KKNPKLLNALRRCFF 79 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhcc---CCCChHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999998764321 235789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 277 KENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1467)
Q Consensus 277 ~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~ 355 (1467)
+.++..+++.++.+++.+++|++++.+++|+...+. ....++.++++++++.++.+++.++++|...++++++|.+|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~ 159 (1490)
T TIGR01271 80 WRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFS 159 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999853222 2345788888888889999999888999999999999999999
Q ss_pred HHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNV 435 (1467)
Q Consensus 356 ~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~~ 435 (1467)
.+|+|+++++...+++.++|+++|+|++|++++.++...+|.+|..|+++++++++||.++|+++++|+++++++++++.
T Consensus 160 ~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~ 239 (1490)
T TIGR01271 160 LIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQA 239 (1490)
T ss_pred HHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 436 PFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTIIS 515 (1467)
Q Consensus 436 ~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~~~~ 515 (1467)
++++++.++++++++.+|+|++.++|+++|||+||+|+||+.|.+++++.|++|++.+++..+...+...+++..|.++.
T Consensus 240 ~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1490)
T TIGR01271 240 CLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVV 319 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887776677777788888888
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCc
Q 000481 516 SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVR-MIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRS 594 (1467)
Q Consensus 516 ~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~-~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~ 594 (1467)
+++|++|.+.. .++++.+|++++++++++.|+. .+|..+..+.++.+|++||++||..+|.+.... ......
T Consensus 320 ~~~f~~y~~~~--~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~-----~~~~~~ 392 (1490)
T TIGR01271 320 FLSVVPYALIK--GIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY-----NLTTTE 392 (1490)
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc-----cCCCCc
Confidence 88888887764 3689999999999999999985 799999999999999999999998766532111 112346
Q ss_pred EEEEeEEEEeCCC-------------------------------CCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHH
Q 000481 595 VKIQEGNFSWDPE-------------------------------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI 643 (1467)
Q Consensus 595 I~~~~~sf~~~~~-------------------------------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l 643 (1467)
|+++|++|+|+.. ..+++|+|+||+|++|++++|+||||||||||+++|
T Consensus 393 i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l 472 (1490)
T TIGR01271 393 VEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMI 472 (1490)
T ss_pred eEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 9999999999531 014689999999999999999999999999999999
Q ss_pred hCCCCCCCcEEEEcCeEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChH
Q 000481 644 LGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1467)
Q Consensus 644 ~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 723 (1467)
+|+++|++|+|.++|+||||+|+||++++||+|||+||.++++++|++++++|+|++|++.+|+||+|+||++|.+||||
T Consensus 473 ~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgG 552 (1490)
T TIGR01271 473 MGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGG 552 (1490)
T ss_pred hCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChH
Q 000481 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~ 803 (1467)
|||||+||||+|++|++|||||||||||+++++++++.++....+++|+|+|||+++.++.||+|++|++|+|++.|+++
T Consensus 553 qkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~ 632 (1490)
T TIGR01271 553 QRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFS 632 (1490)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999998887777899999999999999999999999999999999999
Q ss_pred HHHhcCchHHHHHHHhhhhc-----------cC------CC--------CCCC-C--CCCCcc--c--------------
Q 000481 804 ELLLAGTAFEQLVNAHRDAI-----------TG------LG--------PLDN-A--GQGGAE--K-------------- 839 (1467)
Q Consensus 804 ~l~~~~~~~~~~~~~~~~~~-----------~~------~~--------~~~~-~--~~~~~~--~-------------- 839 (1467)
++.+.++.|.+......... .+ .+ +.+. . .+...+ +
T Consensus 633 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1490)
T TIGR01271 633 ELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASA 712 (1490)
T ss_pred HHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99887666665553110000 00 00 0000 0 000000 0
Q ss_pred ----------------c-cccC-CCC-------CC-------CCCCCC--------------------C-----CCC-C-
Q 000481 840 ----------------V-EKGR-TAR-------PE-------EPNGIY--------------------P-----RKE-S- 860 (1467)
Q Consensus 840 ----------------~-~~~~-~~~-------~~-------~~~~~~--------------------~-----~~~-~- 860 (1467)
. +... ... ++ .+.... . .+. .
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1490)
T TIGR01271 713 RKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQL 792 (1490)
T ss_pred cccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence 0 0000 000 00 000000 0 000 0
Q ss_pred --------C--c-----ccc-------c--------c-----cccCCcchHHHhhcCcccHHHHHHHHHhhchhHHHHHH
Q 000481 861 --------S--E-----GEI-------S--------V-----KGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLG 905 (1467)
Q Consensus 861 --------~--~-----~~~-------~--------~-----~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~ 905 (1467)
. . .+. . . .....+.++|+++.|.++|++|+.|+++.+++.+++++
T Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~ 872 (1490)
T TIGR01271 793 QTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIF 872 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHH
Confidence 0 0 000 0 0 00012345677888999999999999987665555555
Q ss_pred HHHHHHHHHhhhhhhHHHHhhcccC---------cc-------------chhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 906 VLAQSGFVGLQAAATYWLAYAIQIP---------KI-------------TSGIL-IGVYAGVSTASAVFVYFRSFFAAHL 962 (1467)
Q Consensus 906 ~~~~~~~~~~~~~~~~wl~~~~~~~---------~~-------------~~~~~-~~~y~~l~~~~~~~~~~~~~~~~~~ 962 (1467)
+++.++.+++..+.+||+..|.... +. ...+| +++|+++.++..++.+++.++..+.
T Consensus 873 ~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1490)
T TIGR01271 873 CLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHT 952 (1490)
T ss_pred HHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677788889999998886411 00 11223 5566666666677788899999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000481 963 GLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAI 1042 (1467)
Q Consensus 963 ~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1042 (1467)
+.++++++|.+++++++++|++|||++|+|+|+|||++|++.+|..+|..+..++..++.+++.++++++.+|+++++++
T Consensus 953 ~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~ 1032 (1490)
T TIGR01271 953 LLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAI 1032 (1490)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1043 FAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLI 1122 (1467)
Q Consensus 1043 ~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~ 1122 (1467)
|+++++++++++|.+++|+++|++..+++|+++|+.|+++|+.|||+||++++|.+++.+..|.+.+.++.....++|+.
T Consensus 1033 ~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 1112 (1490)
T TIGR01271 1033 PVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQ 1112 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcC
Q 000481 1123 LRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202 (1467)
Q Consensus 1123 ~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~ 1202 (1467)
.++++++.+..+.++++.+ ....+++|.+|++++|++.+...+.++++.+.++++.+.|+||+.+|.+.|+|++...+
T Consensus 1113 ~~~~~i~~~~~~~~~~l~~--~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~ 1190 (1490)
T TIGR01271 1113 MRIDIIFVFFFIAVTFIAI--GTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSG 1190 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 9999887654444333322 22346788899999999999999999999999999999999999999998877542111
Q ss_pred --------------CCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC
Q 000481 1203 --------------DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1467)
Q Consensus 1203 --------------~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~ 1268 (1467)
...+|+.||..|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++
T Consensus 1191 ~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~ 1270 (1490)
T TIGR01271 1191 GGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS 1270 (1490)
T ss_pred cccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 123456799999999999999999877889999999999999999999999999999999999998
Q ss_pred CCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCccccccc
Q 000481 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSD 1348 (1467)
Q Consensus 1269 ~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e 1348 (1467)
.+|+|+|||+||++++++++|++|++|||||+||+||||+||||+++++|+++|+||+++++++++.++|+||||+|+|
T Consensus 1271 -~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e 1349 (1490)
T TIGR01271 1271 -TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD 1349 (1490)
T ss_pred -CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEE
Q 000481 1349 EGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKL 1428 (1467)
Q Consensus 1349 ~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~i 1428 (1467)
+|.||||||||||||||||||+|+|||||||||+||.+||+.||++|++.|++||||+||||++|+.+||||+|||+|+|
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~i 1429 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSV 1429 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhHHhccCChhHHHHHHHHHh
Q 000481 1429 LEYDEPSKLMETNSSFSKLVAEYWSS 1454 (1467)
Q Consensus 1429 vE~g~p~~Ll~~~~~f~~lv~~~~~~ 1454 (1467)
+|+|+|++|++++|.|++|+++....
T Consensus 1430 vE~g~p~~Ll~~~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1430 KQYDSIQKLLNETSLFKQAMSAADRL 1455 (1490)
T ss_pred EEeCCHHHHHcCCcHHHHHHHHhChh
Confidence 99999999999899999999887653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-187 Score=1898.22 Aligned_cols=1253 Identities=29% Similarity=0.463 Sum_probs=1076.1
Q ss_pred CCCCccCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCccCcHHHHHHHHHHHHHHHHHhhc-----------------
Q 000481 197 QTELGKAGLLRKLTFSWINPLLSLGYSKPLALEDIPSLVPEDEASFAYQKFAYAWDSLVRENN----------------- 259 (1467)
Q Consensus 197 ~~p~~~a~~~s~~~f~W~~~l~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~----------------- 259 (1467)
+.||++||||.++++.|++|++.+..|..|+++|||+...+.++-+...++.+.-++...++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1560)
T PTZ00243 59 PVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDAS 138 (1560)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecccc
Confidence 479999999999999999999999999999999999999999997776666554433221100
Q ss_pred ----------------------------------C---------------------------------------------
Q 000481 260 ----------------------------------S--------------------------------------------- 260 (1467)
Q Consensus 260 ----------------------------------~--------------------------------------------- 260 (1467)
.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (1560)
T PTZ00243 139 SRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSSTG 218 (1560)
T ss_pred ccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecccc
Confidence 0
Q ss_pred ---------CCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHH
Q 000481 261 ---------NNNGNLVRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVE 331 (1467)
Q Consensus 261 ---------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~ 331 (1467)
+.+..++++++++++++.++..++++++.+++.+++|++++.+++++++++.....++.++++++++.++.
T Consensus 219 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~~ 298 (1560)
T PTZ00243 219 SVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLIQ 298 (1560)
T ss_pred cccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Confidence 00112689999999999999999999999999999999999999998665545556778888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC--CCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 000481 332 SFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRK--KHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAI 409 (1467)
Q Consensus 332 ~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~l~l~~~~~~--~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~~ 409 (1467)
+++.+++++...+.+.++|.+|...+|+|+++++..... +.++|+++|+|++|++++.++..++|.+|..|+++++++
T Consensus 299 ~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~ 378 (1560)
T PTZ00243 299 SVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSI 378 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987665 568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH
Q 000481 410 GVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKE 489 (1467)
Q Consensus 410 ~~L~~~lg~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E 489 (1467)
++||.++||++++|++++++++|++.++++++.+.++++++.+|+|++.++|+++|||+||+++||+.|.+++++.|++|
T Consensus 379 ~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~E 458 (1560)
T PTZ00243 379 LLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARE 458 (1560)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 490 FKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRI 569 (1467)
Q Consensus 490 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri 569 (1467)
++.+++..+...+..++++..|.++.+++|++|.+.+ ++||++.+|+++++|+.++.|+.++|..++.+.++.+|++||
T Consensus 459 l~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g-~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI 537 (1560)
T PTZ00243 459 LRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLG-HELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRI 537 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888888888899998888998888776 899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCc------cc--------c--c------c-------c-----------------------------ccCC
Q 000481 570 NAFLLDHELNND------DV--------R--R------I-------S-----------------------------LQKS 591 (1467)
Q Consensus 570 ~~fL~~~e~~~~------~~--------~--~------~-------~-----------------------------~~~~ 591 (1467)
++||..+|...+ .. . . . + ....
T Consensus 538 ~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1560)
T PTZ00243 538 STFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHP 617 (1560)
T ss_pred HHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccc
Confidence 999987652100 00 0 0 0 0 0001
Q ss_pred CCcEEEEeEEEEeCCC-------------------------------------CCCCcccceeEEecCCcEEEEeCCCCC
Q 000481 592 DRSVKIQEGNFSWDPE-------------------------------------LAIPTLRGVNLDIKWAQKIAVCGSVGA 634 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~-------------------------------------~~~~~L~~i~l~i~~G~~~~ivG~~Gs 634 (1467)
...+.++|++|+|+.. .++++|+|+||+|++|++++|+|||||
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGs 697 (1560)
T PTZ00243 618 SPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGS 697 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCC
Confidence 1246677777765410 124689999999999999999999999
Q ss_pred ChHHHHHHHhCCCCCCCcEEEEcCeEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCcccc
Q 000481 635 GKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIG 714 (1467)
Q Consensus 635 GKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig 714 (1467)
|||||+++|+|+++|++|+|.++++||||||+||++++||+|||.|+.++++++|++++++|++++|++.+|+|++|.+|
T Consensus 698 GKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~ 777 (1560)
T PTZ00243 698 GKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIG 777 (1560)
T ss_pred cHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhc
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred CCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCC
Q 000481 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGG 794 (1467)
Q Consensus 715 ~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G 794 (1467)
++|.+|||||||||+||||+|++|++||||||||+||++++++++++++....+|+|+|+|||+++.++.||+|++|++|
T Consensus 778 ~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G 857 (1560)
T PTZ00243 778 EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDG 857 (1560)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999998877666899999999999999999999999999
Q ss_pred eEeEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCccc--ccccccCC
Q 000481 795 QITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGE--ISVKGLTQ 872 (1467)
Q Consensus 795 ~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 872 (1467)
++.+.|+++++++.+ .+.++........+..+..........+. ........... ...........+ .......+
T Consensus 858 ~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 934 (1560)
T PTZ00243 858 RVEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDA-APGGAVDHEPP-VAKQEGNAEGGDGAALDAAAGR 934 (1560)
T ss_pred EEEEecCHHHHHhCh-HHHHHHHhhcccccccccccccccccccc-ccccccccccc-ccccccccccccccccccccch
Confidence 999999999998753 46666543211110000000000000000 00000000000 000000000000 00011134
Q ss_pred cchHHHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccC-ccchhHHHHHHHHHHHHHHHH
Q 000481 873 LTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP-KITSGILIGVYAGVSTASAVF 951 (1467)
Q Consensus 873 ~~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~-~~~~~~~~~~y~~l~~~~~~~ 951 (1467)
+.++|+++.|.++|++|+.|++..++..++++.++..+...++....++|++.|.... ......|+++|+++.++..++
T Consensus 935 l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~~~~~ 1014 (1560)
T PTZ00243 935 LMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFS 1014 (1560)
T ss_pred hhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHHHH
Confidence 5567788899999999999999877665555555555555667788899999998643 233456788898888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000481 952 VYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMT 1031 (1467)
Q Consensus 952 ~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~ 1031 (1467)
.+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..++..+..++..++.+++.+++++
T Consensus 1015 ~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~ 1094 (1560)
T PTZ00243 1015 VPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTS 1094 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778889999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHH
Q 000481 1032 FVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLF 1111 (1467)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~ 1111 (1467)
+..|.++++++|++++++.+.++|.+..|+++|.+..+++|++++++|+++|+.|||+|++++.|.+++.+..|.+.+..
T Consensus 1095 ~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~ 1174 (1560)
T PTZ00243 1095 ASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCS 1174 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 88888878888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000481 1112 FHTNGVMEWLILRVEALQNLTLFTAALFLV---LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIK 1188 (1467)
Q Consensus 1112 ~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~---~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~ 1188 (1467)
+.....++|+.+++++++++.+++++++.+ ....+.+++|.++++++|+..++.++.++++.+.++++.++|+||+.
T Consensus 1175 ~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~ 1254 (1560)
T PTZ00243 1175 YLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLL 1254 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988776555444332 22344578999999999999999999999999999999999999999
Q ss_pred HhhcC-CCCCCCCc-----------------------CCCCCC---CCCCCcceEEEEEEEEEeCCCCCcceeceeEEee
Q 000481 1189 QFMHI-PPEPPAIV-----------------------EDKRPP---SSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFS 1241 (1467)
Q Consensus 1189 ~~~~~-~~e~~~~~-----------------------~~~~~~---~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~ 1241 (1467)
+|.+. |+|+.... +...++ +.||..|.|+|+||+|+|+++.++||+||||+|+
T Consensus 1255 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~ 1334 (1560)
T PTZ00243 1255 YYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIA 1334 (1560)
T ss_pred HHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEEC
Confidence 99963 43321100 011122 2356779999999999998887889999999999
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHH
Q 000481 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDE 1321 (1467)
Q Consensus 1242 ~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~e 1321 (1467)
||||||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+|
T Consensus 1335 ~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdee 1414 (1560)
T PTZ00243 1335 PREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAE 1414 (1560)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC
Q 000481 1322 IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKR-NRILVLDEANASIDSATDAILQRIIRQEFS 1400 (1467)
Q Consensus 1322 i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~-~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~ 1400 (1467)
||+||++|++++++.++|+||||.|+|+|.|||||||||||||||||++ |+|||||||||+||.+||+.||++|++.|+
T Consensus 1415 I~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~ 1494 (1560)
T PTZ00243 1415 VWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS 1494 (1560)
T ss_pred HHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999996 899999999999999999999999999999
Q ss_pred CcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhc-cCChhHHHHHHHHH
Q 000481 1401 NCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME-TNSSFSKLVAEYWS 1453 (1467)
Q Consensus 1401 ~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f~~lv~~~~~ 1453 (1467)
+||+|+||||++|+.+||||+|||+|+|+|+|+|+||++ ++|.|++|+++...
T Consensus 1495 ~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~ 1548 (1560)
T PTZ00243 1495 AYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGR 1548 (1560)
T ss_pred CCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 999999999999999999999999999999999999998 68999999987654
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-155 Score=1459.87 Aligned_cols=1159 Identities=22% Similarity=0.279 Sum_probs=880.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCC--cc----hHHHHHHHHHHHHHHHHHH-HHHH
Q 000481 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAF---VNYSNRGE--EN----LQEGLSIVGCLIITKVVES-FTQR 336 (1467)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~---i~~~~~~~--~~----~~~~~~l~~~l~~~~~~~~-~~~~ 336 (1467)
+++.+..+-+.++++..+..+...+.+..+|++...+ .+.+.... .. ...++.++ .+.+..++.+ +...
T Consensus 15 ~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~-~lg~~~~~~~~~q~~ 93 (1228)
T KOG0055|consen 15 FFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFV-YLGVGVFISGFIQVS 93 (1228)
T ss_pred hHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4443334456778888888888888889999875433 33322111 11 11122222 1222222223 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 000481 337 HCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGV 415 (1467)
Q Consensus 337 ~~~~~~~~~~~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~ 415 (1467)
+|.+.+.|...|+|..+..++ ||....+++.+.+|++++.|+.|++++++.+.- +..+......++.++++.+..
T Consensus 94 c~~~~geRq~~riR~~yl~~i----LrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 94 CWMRTGERQTARIRSKYLKAI----LRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778888888888775555 555666777788899999999999999886542 222222223333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 000481 416 VGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSE 495 (1467)
Q Consensus 416 lg~~~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~ 495 (1467)
-+..+++.+...+++......+++.+.+...+.+++..+..+++.|.+++||+|-+|+-|+...++..+.-+.-.|.-.+
T Consensus 170 ~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~ 249 (1228)
T KOG0055|consen 170 GWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIK 249 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555666778888888888888888999999999999999999999987665554443333333222
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000481 496 AQLRKAY-GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLL 574 (1467)
Q Consensus 496 ~~~~~~~-~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~ 574 (1467)
..+...+ ..+.+++.-......+|+|..++..+..+++++++.+.....-...+.+....+..+..|+++..+|.+.++
T Consensus 250 ~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~ 329 (1228)
T KOG0055|consen 250 KGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETID 329 (1228)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhc
Confidence 2222222 223333333444556677766666688999999999887777788899999999999999999999999887
Q ss_pred CCCC-CCcccccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcE
Q 000481 575 DHEL-NNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1467)
Q Consensus 575 ~~e~-~~~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~ 653 (1467)
..+. +.............+.|+|+||.|+||.+++.++|+|+||+|++|+.+||||||||||||++++|.|+|+|++|+
T Consensus 330 ~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~ 409 (1228)
T KOG0055|consen 330 RKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE 409 (1228)
T ss_pred CCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce
Confidence 6433 222211222334567899999999999988889999999999999999999999999999999999999999999
Q ss_pred EEEcC-------------eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCc
Q 000481 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1467)
Q Consensus 654 i~~~g-------------~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~ 719 (1467)
|.++| +||.|+|+|.+|++||+|||.||+| .+++++.++++++..++++..+|+|++|.+||+|..
T Consensus 410 V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q 489 (1228)
T KOG0055|consen 410 VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ 489 (1228)
T ss_pred EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCC
Confidence 99988 4999999999999999999999996 678999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEe
Q 000481 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1467)
Q Consensus 720 LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1467)
|||||||||||||||.+||+||||||||||||++.++.+ +++++...+|||.|+|+||++++++||+|++|++|+|+|.
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~V-q~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVV-QEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ 568 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHH-HHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999997765 7888899999999999999999999999999999999999
Q ss_pred cChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCC--CCCCccc-ccccccCCcchH
Q 000481 800 GNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPR--KESSEGE-ISVKGLTQLTED 876 (1467)
Q Consensus 800 G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~ 876 (1467)
|+|+||++.+|.|.++++.+.....+.+.+++.. ..+.......... ......+. ....... ...+.......+
T Consensus 569 G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~--~~~~~~~s~~~s~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 645 (1228)
T KOG0055|consen 569 GTHDELIALGGIYSSLVRLQELEKAAEDEEEEES--LKEERSRSLKSSS-SSPSLSRGSNRSNLLSVKPEGEDPEEPVSE 645 (1228)
T ss_pred cCHHHHHhccchHHHHHHHHhhhhhhhccccccc--hhhhhhhcccccc-ccccccCCcccccccccccccccccccccc
Confidence 9999999999999999987654322111000000 0000000000000 00000000 0000000 000000000000
Q ss_pred HHhhcCcccHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHhhhhhhHHHHhhcc----cC-c---cchhHHHHHHHHHHHH
Q 000481 877 EEMEIGDVGWKPFMDYLNVSK-GMSLLCLGVLAQSGFVGLQAAATYWLAYAIQ----IP-K---ITSGILIGVYAGVSTA 947 (1467)
Q Consensus 877 e~~~~g~v~~~~y~~y~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~----~~-~---~~~~~~~~~y~~l~~~ 947 (1467)
++ ....+++-++.+. .|.++++++++.+...+..+...+.++.... .+ + .....|..+|+++++.
T Consensus 646 ~~------~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~ 719 (1228)
T KOG0055|consen 646 ED------EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIV 719 (1228)
T ss_pred cc------ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 11 1223455554443 4666666777666666666666665554332 11 1 1233588899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc--ccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHH
Q 000481 948 SAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLA 1025 (1467)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~--~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~ 1025 (1467)
..++.++..+++...+.+..+++|..+++++++.++.|||. +. |+|.+|+++|...+...+...+..+++.+..++.
T Consensus 720 ~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~ 798 (1228)
T KOG0055|consen 720 SGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVII 798 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997 45 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHH
Q 000481 1026 IIGIMTFVTWQVLVVA---IFAMVAVRFVQRYYIAT-ARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYL 1101 (1467)
Q Consensus 1026 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~y~~~-~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~ 1101 (1467)
.+++.+++.|.+.+++ .|++++..+.+.+++.. +++.+.. .........|++++++||++|+.|++|++.|.
T Consensus 799 ~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~----~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~ 874 (1228)
T KOG0055|consen 799 GIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKA----YEEASKIAIEAVSNIRTVAALCAEEKFMELYK 874 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHH
Confidence 9999999999987665 56666666666665544 3333332 22335678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF----LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYL 1177 (1467)
Q Consensus 1102 ~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~----~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~l 1177 (1467)
+.++...+..+.. ..|-++...+-.++..+.-++. .+++..+.+++..+-..+.-...-...+.....+..++
T Consensus 875 ~~l~~p~~~~~~~---~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~ 951 (1228)
T KOG0055|consen 875 EELEKPRKSSFKR---GLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDI 951 (1228)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 9888776655433 2333444333333333333332 24566777777765443332222233455566777888
Q ss_pred HHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeC--CCCCcceeceeEEeeCCcEEEEEcCCCCc
Q 000481 1178 ANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYR--PNAPLVLKGITCTFSEGTRVGVVGRTGSG 1255 (1467)
Q Consensus 1178 e~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~--~~~~~vLk~is~~I~~GekVgIVGrTGsG 1255 (1467)
.+...|+.+++++++.+++-+...+.. ...-+.+|+|+|+||+|+|+ |+. +||+|+|++|++||+||+|||||||
T Consensus 952 ~ka~~Aa~~iF~i~dr~~~i~~~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~-~Il~~l~l~i~~GqTvALVG~SGsG 1028 (1228)
T KOG0055|consen 952 SKAKIAAGSIFEILDRKPTIDPDSTSG--GKLPNVKGDIEFRNVSFAYPTRPDV-PVLNNLSLSIRAGQTVALVGPSGSG 1028 (1228)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCC--CccccceeEEEEeeeEeeCCCCCCc-hhhcCCcEEecCCCEEEEECCCCCC
Confidence 999999999999998776432211111 11113689999999999995 333 5999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCC-CCCCHHHHHHHHHHcCCchH
Q 000481 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTT 1334 (1467)
Q Consensus 1256 KSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~ 1334 (1467)
|||++.+|.|+|+|.+|.|.|||.||++++++.||++|++|.|||.||++||||||... .+.+++||.+|++.+++++|
T Consensus 1029 KSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~F 1108 (1228)
T KOG0055|consen 1029 KSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNF 1108 (1228)
T ss_pred HHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999744 24799999999999999999
Q ss_pred HhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhh
Q 000481 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTV 1414 (1467)
Q Consensus 1335 i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti 1414 (1467)
|.+||+||||.|||+|.+||||||||||||||++||||||+||||||+||.++|+.+|++|.+...+||.|+|||||+||
T Consensus 1109 I~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTI 1188 (1228)
T KOG0055|consen 1109 ISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTI 1188 (1228)
T ss_pred HhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHH
Q 000481 1415 IDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451 (1467)
Q Consensus 1415 ~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~ 1451 (1467)
++||.|.|+++|+|+|.|+|++|++++|.|++|++.+
T Consensus 1189 qnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1189 QNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQ 1225 (1228)
T ss_pred hcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhc
Confidence 9999999999999999999999999999999998754
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-140 Score=1425.21 Aligned_cols=1172 Identities=18% Similarity=0.194 Sum_probs=850.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 273 NVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSA 352 (1467)
Q Consensus 273 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 352 (1467)
+.+++.++++.++.++..++..+.|+++..+++.+.... .... ++..+++..++..++.....+...+++.++...
T Consensus 56 ~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~-~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 131 (1466)
T PTZ00265 56 ASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE-NVND---IIFSLVLIGIFQFILSFISSFCMDVVTTKILKT 131 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777888888888888888889999988653211 1111 122222333334444444455667788888888
Q ss_pred HHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 353 LMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICG 431 (1467)
Q Consensus 353 L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~ 431 (1467)
++..+|+|.++++..++++.+.|++.+.++.|++.+++.+. .+..+...++.++.++++++..-...+++.++++++++
T Consensus 132 lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~ 211 (1466)
T PTZ00265 132 LKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIY 211 (1466)
T ss_pred HHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999887643 34555555666666666665544444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000481 432 LLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVIYWMS 510 (1467)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~-~~~~~~~~ 510 (1467)
.+...+.+++++..++.++..++..+.+.|.++|||+||.|+.|+.+.++.++..+...+...+.....++ ..+...+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 291 (1466)
T PTZ00265 212 ICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFI 291 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778888888888888899999999999999999999999988777765544433332222222222 22222333
Q ss_pred HHHHHHHHHHHHHHhCC--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 000481 511 PTIISSVIFLGCALTGS--------APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1467)
Q Consensus 511 ~~~~~~~~f~~~~l~~~--------~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 582 (1467)
.....++.++|..++.+ +.++++.+++++........++..+...+..++++.+|.+||.++++.++..++.
T Consensus 292 ~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~ 371 (1466)
T PTZ00265 292 LASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENN 371 (1466)
T ss_pred HHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 33334445555555543 3588898888776655555666666677899999999999999999765432111
Q ss_pred cccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEc-C---
Q 000481 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLY-G--- 658 (1467)
Q Consensus 583 ~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~-g--- 658 (1467)
.+....+ ....|+++|++|+|+.+++.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |
T Consensus 372 ~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i 450 (1466)
T PTZ00265 372 DDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNL 450 (1466)
T ss_pred CCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcch
Confidence 1111111 1237999999999986444579999999999999999999999999999999999999999999994 3
Q ss_pred ----------eEEEEccCCcCCCCCHHHHHhcCCC---------------------------------------------
Q 000481 659 ----------SIAYVSQTSWIQSGSIRDNILYGKP--------------------------------------------- 683 (1467)
Q Consensus 659 ----------~i~yv~Q~~~l~~~ti~eNi~~g~~--------------------------------------------- 683 (1467)
.||||+|+|.+|++||+|||.+|..
T Consensus 451 ~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1466)
T PTZ00265 451 KDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTD 530 (1466)
T ss_pred hhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence 3899999999999999999999741
Q ss_pred -------------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 000481 684 -------------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV 750 (1467)
Q Consensus 684 -------------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~sal 750 (1467)
.+++++.++++.+++++++..+|+|++|.+|++|.+|||||||||+||||++++|+|||||||||+|
T Consensus 531 ~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaL 610 (1466)
T PTZ00265 531 SNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSL 610 (1466)
T ss_pred hhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 2346788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCC-----------------------------------
Q 000481 751 DAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGG----------------------------------- 794 (1467)
Q Consensus 751 D~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G----------------------------------- 794 (1467)
|+++++.+.+.+.+... +|+|+|+||||++.+..||+|++|++|
T Consensus 611 D~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1466)
T PTZ00265 611 DNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNN 690 (1466)
T ss_pred CHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccccccccccc
Confidence 99999988655443332 589999999999999999999999986
Q ss_pred ------------eEeEecChHHHHh-cCchHHHHHHHhhhhccCCCCCCCCCCCC--cccccccCCCC-CCCCCC-----
Q 000481 795 ------------QITQSGNYQELLL-AGTAFEQLVNAHRDAITGLGPLDNAGQGG--AEKVEKGRTAR-PEEPNG----- 853 (1467)
Q Consensus 795 ------------~i~~~G~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~----- 853 (1467)
+|+|+|+|+||++ .++.|..+++.+...........+..... ........... ..+...
T Consensus 691 ~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (1466)
T PTZ00265 691 NNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHE 770 (1466)
T ss_pred cccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999998 68999999876532211100000000000 00000000000 000000
Q ss_pred CCCCC-CCCc----cc-ccccccCCcchHHHh--hcCcc--cHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHH
Q 000481 854 IYPRK-ESSE----GE-ISVKGLTQLTEDEEM--EIGDV--GWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWL 923 (1467)
Q Consensus 854 ~~~~~-~~~~----~~-~~~~~~~~~~~~e~~--~~g~v--~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl 923 (1467)
..... .... .+ .+.....+....++. ..... .+..+++++...... +++.+++.++..++.++.++.+
T Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 848 (1466)
T PTZ00265 771 NESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKD--VTIIALSILVAGGLYPVFALLY 848 (1466)
T ss_pred ccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0000 00 000000000000000 00001 122223333222111 2222223333334444444444
Q ss_pred Hhhccc----Cc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc--ccchhHH
Q 000481 924 AYAIQI----PK--ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDS--TPVGRIL 995 (1467)
Q Consensus 924 ~~~~~~----~~--~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~--~~~G~il 995 (1467)
+.+++. .. .....+..++++++++..++.+++.++..+.+.+...+++.++++++++.|++|||+ +++|+++
T Consensus 849 ~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~ 928 (1466)
T PTZ00265 849 AKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLS 928 (1466)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHH
Confidence 444331 11 112345566777777888888999999999999999999999999999999999996 8899999
Q ss_pred HHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH--------
Q 000481 996 TRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIA--TARELIRI-------- 1065 (1467)
Q Consensus 996 nR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--~~r~l~rl-------- 1065 (1467)
+|+++|++.+...+...+..++..++.+++.++++++.+|.++++++|+.++.........+ ..++.++.
T Consensus 929 srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1466)
T PTZ00265 929 AHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTV 1008 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 99999999999998888888888888888888888999998877666544333222111111 11121111
Q ss_pred -----hccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000481 1066 -----NGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL-FTAALF 1139 (1467)
Q Consensus 1066 -----~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~-~~~~~~ 1139 (1467)
+.+..+...+.++|+++|++|||+|+.|+++.+++.+..+...+..........++....+++..+.. ++..+.
T Consensus 1009 ~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 1088 (1466)
T PTZ00265 1009 FAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFG 1088 (1466)
T ss_pred cchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123456788999999999999999999999999998877665554433332222222222222221 122223
Q ss_pred HHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCC-CCCCCCcceEEE
Q 000481 1140 LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRP-PSSWPFKGRIEL 1218 (1467)
Q Consensus 1140 ~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~-~~~wp~~g~I~f 1218 (1467)
..++..|.++.|.+..++.+.+........+...+.+++....+.+|+.++++.+++.+.......+ +...+..|.|+|
T Consensus 1089 ~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f 1168 (1466)
T PTZ00265 1089 SFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEI 1168 (1466)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEE
Confidence 3455678888887666555544333456667788899999999999999999876543211111111 001234688999
Q ss_pred EEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC----------------------------
Q 000481 1219 RQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP---------------------------- 1269 (1467)
Q Consensus 1219 ~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~---------------------------- 1269 (1467)
+||+|+|+.. ..+||+|+||+|+|||+|||||+||||||||+++|+|+|+|
T Consensus 1169 ~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1466)
T PTZ00265 1169 MDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248 (1466)
T ss_pred EEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccc
Confidence 9999999632 23699999999999999999999999999999999999999
Q ss_pred --------------------------CcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHH
Q 000481 1270 --------------------------AGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEI 1322 (1467)
Q Consensus 1270 --------------------------~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei 1322 (1467)
++|+|+|||+||+++++++||++|+||||||+||+|||||||.... +++|+|+
T Consensus 1249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI 1328 (1466)
T PTZ00265 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDV 1328 (1466)
T ss_pred ccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHH
Confidence 6999999999999999999999999999999999999999997553 5899999
Q ss_pred HHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--C
Q 000481 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--S 1400 (1467)
Q Consensus 1323 ~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~ 1400 (1467)
++|++.+++++||.+||+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++.. +
T Consensus 1329 ~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~ 1408 (1466)
T PTZ00265 1329 KRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKA 1408 (1466)
T ss_pred HHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999873 6
Q ss_pred CcEEEEEccCchhhcccCEEEEEeC----CEE-EEecChhHHhc-cCChhHHHHHHH
Q 000481 1401 NCTVITVAHRVPTVIDSDMVMVLSY----GKL-LEYDEPSKLME-TNSSFSKLVAEY 1451 (1467)
Q Consensus 1401 ~~TvI~IAHRl~ti~~~DrIlVl~~----G~i-vE~g~p~~Ll~-~~~~f~~lv~~~ 1451 (1467)
++|+|+||||++|+.+||+|+||++ |++ +|.|+|+||++ ++|.|++|++.+
T Consensus 1409 ~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1409 DKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred CCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 9999999999999999999999999 995 59999999998 699999998653
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-92 Score=842.66 Aligned_cols=515 Identities=25% Similarity=0.390 Sum_probs=446.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHH
Q 000481 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFV 1016 (1467)
Q Consensus 937 ~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~ 1016 (1467)
...+..++.++.+++.+++.+++.+.+.+...+++..+|++++++.++|||.+.+|++++|+++|...+...++..+...
T Consensus 190 ~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~ 269 (716)
T KOG0058|consen 190 ACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDG 269 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 34566677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHH
Q 000481 1017 AASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096 (1467)
Q Consensus 1017 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f 1096 (1467)
+.+.++.++.+++|++.+|.+..+.+..+++...+.++|.+..|++.+...++-+...+...|.+++++|+|+|+.|++.
T Consensus 270 lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E 349 (716)
T KOG0058|consen 270 LRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQE 349 (716)
T ss_pred HHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHH
Confidence 99999999999999999999987766555555555555555555555555566667788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYC 1175 (1467)
Q Consensus 1097 ~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~ 1175 (1467)
.++|.+.++...+...........+....++.+++....+ .....++..|.+++|.+..++.|...+...+.++...++
T Consensus 350 ~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys 429 (716)
T KOG0058|consen 350 VKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYS 429 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988876554432222222222222233333332222 223346678899999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCC
Q 000481 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGS 1254 (1467)
Q Consensus 1176 ~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGs 1254 (1467)
++-+.+.|.+|++||+|.+|.-+.. +...|. ..+|.|+|+||+|+|+.. ..+||||+||+|+|||+||+|||||+
T Consensus 430 ~lmkgvGAs~rvFel~dr~P~i~~~--G~~~p~--~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGs 505 (716)
T KOG0058|consen 430 ELMKGVGASERVFELMDRKPRIPLT--GTLAPD--HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGS 505 (716)
T ss_pred HHHHhcchHHHHHHHhccCCCCCCC--Cccccc--cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCC
Confidence 9999999999999999987665432 222222 468999999999999532 23599999999999999999999999
Q ss_pred cHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCC-CCCCHHHHHHHHHHcCCch
Q 000481 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKT 1333 (1467)
Q Consensus 1255 GKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~ 1333 (1467)
||||++++|.|+|+|++|+|++||+||++++.+.||++||+|.|||+||+|||||||... ...+||||.+|+++++.++
T Consensus 506 GKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~ 585 (716)
T KOG0058|consen 506 GKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHE 585 (716)
T ss_pred CHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHH
Confidence 999999999999999999999999999999999999999999999999999999999522 2589999999999999999
Q ss_pred HHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchh
Q 000481 1334 TISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPT 1413 (1467)
Q Consensus 1334 ~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~t 1413 (1467)
||.++|+||||.|||+|..|||||||||||||||+|||+|||||||||+||.++|..||+++.+..+++|||+|||||+|
T Consensus 586 FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLST 665 (716)
T KOG0058|consen 586 FITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLST 665 (716)
T ss_pred HHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCEEEEEeCCEEEEecChhHHhc-cCChhHHHHHHHHHhc
Q 000481 1414 VIDSDMVMVLSYGKLLEYDEPSKLME-TNSSFSKLVAEYWSSC 1455 (1467)
Q Consensus 1414 i~~~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f~~lv~~~~~~~ 1455 (1467)
|+.+|+|+|+|+|+|+|.|+|+||++ ++|.|++|+++.....
T Consensus 666 V~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 666 VRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDSG 708 (716)
T ss_pred hhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhcccC
Confidence 99999999999999999999999999 5699999998765433
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-83 Score=802.92 Aligned_cols=539 Identities=26% Similarity=0.400 Sum_probs=460.0
Q ss_pred HHHHHHhhhhhhHHHHhhccc--Cc--cchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000481 909 QSGFVGLQAAATYWLAYAIQI--PK--ITSGI-LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPM 983 (1467)
Q Consensus 909 ~~~~~~~~~~~~~wl~~~~~~--~~--~~~~~-~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~ 983 (1467)
.+..+.+..+.++.....+|. ++ ..... ....+++.++...++.++|.++..+.+.+....+-.++++++++.|+
T Consensus 163 sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl 242 (709)
T COG2274 163 SLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPL 242 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcH
Confidence 333444555566665555442 11 22222 23344555667788899999999999999999999999999999999
Q ss_pred cccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 984 LFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELI 1063 (1467)
Q Consensus 984 ~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~ 1063 (1467)
+||+++++|++++|+. |++.|...+.......+..++..+..++++++++|.++++++..++++..+.-...+..|+..
T Consensus 243 ~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~ 321 (709)
T COG2274 243 SYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKT 321 (709)
T ss_pred HHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999996 566666667666666666666677778888888998877766555554444333333333333
Q ss_pred HHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000481 1064 RINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALF-LVL 1142 (1467)
Q Consensus 1064 rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~-~~~ 1142 (1467)
+...+..+...++..|++.|+.|||+.+.|+++..++++..++..+..+.......|......++..+..+....+ +.+
T Consensus 322 ~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~l 401 (709)
T COG2274 322 RKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAIL 401 (709)
T ss_pred HHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444566789999999999999999999999999999999999888888888888777777776655544433 456
Q ss_pred hccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEE
Q 000481 1143 IPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLK 1222 (1467)
Q Consensus 1143 ~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs 1222 (1467)
+..+.++.|.+-.+.+.+..+++++..++..+.+++....+.+|+.++.+.|+|.+. ++.+...|+.+|+|+|+||+
T Consensus 402 Vl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~---~~~~~~~~~~~g~I~~~nvs 478 (709)
T COG2274 402 VLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEIEFENVS 478 (709)
T ss_pred HhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---ccccccccccCceEEEEEEE
Confidence 678899999998888889999999999999999999999999999999999988643 22234456778999999999
Q ss_pred EEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcc
Q 000481 1223 IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302 (1467)
Q Consensus 1223 ~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~L 1302 (1467)
|+|+++.|++|+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|++++++++||++|++||||++|
T Consensus 479 f~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~L 558 (709)
T COG2274 479 FRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFL 558 (709)
T ss_pred EEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchh
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q 000481 1303 FRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381 (1467)
Q Consensus 1303 F~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs 1381 (1467)
|+||||||+...+ +.+|||+++|++.+++++||.++|.||||+|||+|.||||||||||+||||+++||+|||||||||
T Consensus 559 f~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTS 638 (709)
T COG2274 559 FSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATS 638 (709)
T ss_pred hcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCccc
Confidence 9999999996443 467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHH
Q 000481 1382 SIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451 (1467)
Q Consensus 1382 ~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~ 1451 (1467)
|||++||+.|.+.+++..++||+|+||||++|+++||||+|||+|+|+|.|+|+||++.+|.|+++++.+
T Consensus 639 aLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~q 708 (709)
T COG2274 639 ALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708 (709)
T ss_pred ccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998654
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-80 Score=788.06 Aligned_cols=536 Identities=25% Similarity=0.383 Sum_probs=442.0
Q ss_pred HHHHhhhhhhHHHHhhcccCc--c-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 000481 911 GFVGLQAAATYWLAYAIQIPK--I-TSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD 987 (1467)
Q Consensus 911 ~~~~~~~~~~~wl~~~~~~~~--~-~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd 987 (1467)
+...+....+++++...+... . ....+...++++.++..++.+...++..+.+.+....++.++++++++.|++||+
T Consensus 25 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~ 104 (567)
T COG1132 25 LSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFD 104 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhC
Confidence 334445555555554333211 1 1122334444555566677777778888888999999999999999999999999
Q ss_pred cccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000481 988 STPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRING 1067 (1467)
Q Consensus 988 ~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~ 1067 (1467)
++++|++++|+++|++.++..+......+...++.+++.+++++..+|.+.++.+...+++.+....+.+..++..+...
T Consensus 105 ~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (567)
T COG1132 105 KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVR 184 (567)
T ss_pred cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888875555656778888888888899988777666655555555555555566777777
Q ss_pred cccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccC
Q 000481 1068 TTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT-AALFLVLIPRG 1146 (1467)
Q Consensus 1068 ~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~-~~~~~~~~~~~ 1146 (1467)
...+.+.+.+.|+++|+++||+|+.++...+++.+..+...+...........+.....++..+.... ..+....+..+
T Consensus 185 ~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (567)
T COG1132 185 EALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSG 264 (567)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77789999999999999999999999988777776665554443222222222222222222222221 12222334567
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeC
Q 000481 1147 YVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYR 1226 (1467)
Q Consensus 1147 ~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~ 1226 (1467)
.++.|.+..++.|...+..++..+...+..++....|.||+.++.+.+++... ...+ .++..|+|+|+||+|+|+
T Consensus 265 ~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~~~~I~f~~vsf~y~ 339 (567)
T COG1132 265 SLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--LKDTIGSIEFENVSFSYP 339 (567)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--CCCCCCeEEEEEEEEEcC
Confidence 78999999999999999999999999999999999999999999987654221 1111 335568899999999997
Q ss_pred CCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccc
Q 000481 1227 PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGS 1306 (1467)
Q Consensus 1227 ~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gT 1306 (1467)
+ .+++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+||++++.++||++|++|||||+||+||
T Consensus 340 ~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~T 418 (567)
T COG1132 340 G-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGT 418 (567)
T ss_pred C-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeeccc
Confidence 5 346999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCCC-CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 000481 1307 VRTNLDPLGL-YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDS 1385 (1467)
Q Consensus 1307 IR~NLdp~~~-~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~ 1385 (1467)
||+||++..+ ++|||+++|++.++++|++.++|+||||.|||+|.+||||||||+|||||++|+|+|||||||||++|+
T Consensus 419 I~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~ 498 (567)
T COG1132 419 IRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498 (567)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCH
Confidence 9999997765 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHHH
Q 000481 1386 ATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYW 1452 (1467)
Q Consensus 1386 ~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~~ 1452 (1467)
+||+.||+++++..+++|+|+||||++|+++||+|+|||+|+|+|+|+|+||++++|.|++|++++.
T Consensus 499 ~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~~ 565 (567)
T COG1132 499 ETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQG 565 (567)
T ss_pred HhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhh
Confidence 9999999999988889999999999999999999999999999999999999999999999987754
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-78 Score=773.43 Aligned_cols=508 Identities=19% Similarity=0.231 Sum_probs=419.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHH
Q 000481 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1467)
Q Consensus 938 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~ 1017 (1467)
+.+++++.++..++.+++.++....+.+....++.++++++++.|++||++.++|++++|+++|++.++..+...+..++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~ 145 (588)
T PRK11174 66 FILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMA 145 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34455555667778888889999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHH
Q 000481 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1467)
Q Consensus 1018 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~ 1097 (1467)
..++.+++.++++++.+|.+.++++..+++..++...+.+..++..+......+.+.+++.|+++|+.+||+|++|+++.
T Consensus 146 ~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~ 225 (588)
T PRK11174 146 LAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAET 225 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHH
Confidence 88888888888888899988766655555555555555555555555555666778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccHHHH---------HHHHHHHHHHHHHH
Q 000481 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAA-LFLVLIPRGYVAPGLV---------GLSLSYAFTLTGTQ 1167 (1467)
Q Consensus 1098 ~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~-~~~~~~~~~~~~~g~~---------g~~l~~~~~l~~~~ 1167 (1467)
+++.+..+...+..........+......++..+...+.. ++.... .+.++.|.+ -.++.++..+..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl 304 (588)
T PRK11174 226 ESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPL 304 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHH
Confidence 9998887766655443333333333323333322221111 111111 244554432 12224555667888
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEE
Q 000481 1168 VFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVG 1247 (1467)
Q Consensus 1168 ~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVg 1247 (1467)
..+...+..+.....+.+|+.++.+.|++++.. ... +...+..+.|+|+||+|.|.++ +++|+|+||+|+|||++|
T Consensus 305 ~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~-~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~va 380 (588)
T PRK11174 305 RDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQ--GEK-ELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIA 380 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--Ccc-ccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEE
Confidence 889999999999999999999999876543211 111 1111234679999999988654 569999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHH
Q 000481 1248 VVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKAL 1326 (1467)
Q Consensus 1248 IVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL 1326 (1467)
|||+||||||||+++|+|+| |++|+|.+||+|+++++.+++|++|+||||||+||+|||||||.... +++|||+++|+
T Consensus 381 IvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al 459 (588)
T PRK11174 381 LVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQAL 459 (588)
T ss_pred EECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999999999997653 58999999999
Q ss_pred HHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEE
Q 000481 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVIT 1406 (1467)
Q Consensus 1327 ~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~ 1406 (1467)
+.|++++++.++|+||||.|||+|.||||||||||+||||++++|+|||||||||+||.+|++.|++.|++..+++|+|+
T Consensus 460 ~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIi 539 (588)
T PRK11174 460 ENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLM 539 (588)
T ss_pred HHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHH
Q 000481 1407 VAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451 (1467)
Q Consensus 1407 IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~ 1451 (1467)
||||++++.+||+|+||++|+++|.|+|+||++++|.|++|++.+
T Consensus 540 ItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 540 VTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHR 584 (588)
T ss_pred EecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHHh
Confidence 999999999999999999999999999999999999999998654
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-78 Score=780.40 Aligned_cols=536 Identities=24% Similarity=0.328 Sum_probs=443.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhcccC--ccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000481 905 GVLAQSGFVGLQAAATYWLAYAIQIP--KIT---SGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIF 979 (1467)
Q Consensus 905 ~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~---~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il 979 (1467)
.+++.++...+....+++.+...+.- +.+ ....+.+++++.++..++.+++.++....+.+...+++.+++++++
T Consensus 166 ~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll 245 (711)
T TIGR00958 166 AFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLL 245 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455566666666544421 111 1123444555566677788888889999999999999999999999
Q ss_pred cccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 980 KAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATA 1059 (1467)
Q Consensus 980 ~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 1059 (1467)
+.|++||+++++|+++||+++|++.++..+...+..++..++.+++.+++++..+|.+.++.+..+++...+.+.+.+..
T Consensus 246 ~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~ 325 (711)
T TIGR00958 246 RQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRY 325 (711)
T ss_pred cCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888888888888999999987766655555555555555555
Q ss_pred HHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 000481 1060 RELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNG---VMEWLILRVEALQNLTLFTA 1136 (1467)
Q Consensus 1060 r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~---~~~wl~~rl~~~~~~~~~~~ 1136 (1467)
++..+...+..+...+++.|+++|+.+||+|+.|+++.+++.+..++..+....... ...|....+..+..+ ++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~il 403 (711)
T TIGR00958 326 QLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQV--LVL 403 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 555555555666778999999999999999999999999999888876655433322 223332222222111 112
Q ss_pred HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceE
Q 000481 1137 ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRI 1216 (1467)
Q Consensus 1137 ~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I 1216 (1467)
.+...++..|.++.|.+..++.|...+..++..+...+.++.+...+.+|+.++++.+++.+.. . ....++..|.|
T Consensus 404 ~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~--~~~~~~~~~~I 479 (711)
T TIGR00958 404 YYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--G--TLAPLNLEGLI 479 (711)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--C--CCCCCCCCCeE
Confidence 2223445678999999999999999999999999999999999999999999999876654321 1 11223457889
Q ss_pred EEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1217 ELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1217 ~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
+|+||+|+|+.+ .+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++
T Consensus 480 ~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 559 (711)
T TIGR00958 480 EFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVAL 559 (711)
T ss_pred EEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceE
Confidence 999999999643 3579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcccccchHHhcCCC-CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEE
Q 000481 1296 IPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374 (1467)
Q Consensus 1296 IpQdp~LF~gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~IL 1374 (1467)
|||||.+|+|||||||... ...+|+++++|++.++++++++++|+|+||.+||+|.+||||||||+|||||++++|+||
T Consensus 560 v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~IL 639 (711)
T TIGR00958 560 VGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVL 639 (711)
T ss_pred EecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999744 357899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHH
Q 000481 1375 VLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 1448 (1467)
Q Consensus 1375 iLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv 1448 (1467)
|||||||+||++||+.|++ ....+++|+|+||||++++..||+|+||++|+|+|.|+|+||++++|.|++|+
T Consensus 640 ILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~lv 711 (711)
T TIGR00958 640 ILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711 (711)
T ss_pred EEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhcC
Confidence 9999999999999999999 34457999999999999999999999999999999999999999999999874
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-77 Score=718.87 Aligned_cols=550 Identities=20% Similarity=0.259 Sum_probs=449.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1467)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1467)
+.+.+..|+.+..+.++.++.....+..|.++.+++|.+...+.....-.-....+.+..++.+++.....+.....+.+
T Consensus 139 ~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~r 218 (716)
T KOG0058|consen 139 LGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGER 218 (716)
T ss_pred HHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888888888999999999999999999997754211111111112223333344445444444555566667
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP-FWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1467)
Q Consensus 349 ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~ 427 (1467)
+-..++..+|++.++....+++++.+||++++++.|++.+.+.+ .++.......++.+.++.+++..-.-.+++.++.+
T Consensus 219 v~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~ 298 (716)
T KOG0058|consen 219 VVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVV 298 (716)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHh
Confidence 77777777899999999999999999999999999999998754 35667777788888888888766554555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000481 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG-TVI 506 (1467)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~-~~~ 506 (1467)
.+++.+..++++++++..++.+++..+-.+..+|.|++||+||+|+-|+...++.++.-++-++.-+|..+...+. ...
T Consensus 299 P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~ 378 (716)
T KOG0058|consen 299 PIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGST 378 (716)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHH
Confidence 5666677788999999999999999999999999999999999999997544433332222222222222222211 111
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccc
Q 000481 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1467)
Q Consensus 507 ~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~ 586 (1467)
..+.......+.|.|..++..+.+|+|.+.+++.|-..+..++..+...++.++++..+.+|+.++++.++.-+......
T Consensus 379 ~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~ 458 (716)
T KOG0058|consen 379 NLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLA 458 (716)
T ss_pred HHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccc
Confidence 12233445566778888888899999999999999999999999999999999999999999999998765433221111
Q ss_pred cccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------
Q 000481 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1467)
Q Consensus 587 ~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------- 658 (1467)
+ ....+.|+|+||+|+||.+++.++|+|+||+|+|||.+|+||||||||||+.++|+++|+|++|+|.++|
T Consensus 459 p-~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~ 537 (716)
T KOG0058|consen 459 P-DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINH 537 (716)
T ss_pred c-ccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCH
Confidence 2 1456789999999999999889999999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
+||+|.|||.+|++||+|||.||.+ .++|++.++.+.+..+++|..+|+|++|.|||+|..|||||||||||||
T Consensus 538 ~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 538 KYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIAR 617 (716)
T ss_pred HHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHH
Confidence 4999999999999999999999986 6789999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcC-ch
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG-TA 811 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~-~~ 811 (1467)
||++||.||||||+|||||++.+..+ ++.++...+++|||+|+||++++++||+|+|+++|+++|.|+|+|+++.. +.
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lV-q~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gl 696 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLV-QEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGL 696 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHH-HHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccH
Confidence 99999999999999999999987654 77888888999999999999999999999999999999999999999987 79
Q ss_pred HHHHHHHhh
Q 000481 812 FEQLVNAHR 820 (1467)
Q Consensus 812 ~~~~~~~~~ 820 (1467)
|.++++.+.
T Consensus 697 y~~Lv~~q~ 705 (716)
T KOG0058|consen 697 YAKLVQRQL 705 (716)
T ss_pred HHHHHHHhc
Confidence 999987654
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-77 Score=773.13 Aligned_cols=505 Identities=24% Similarity=0.357 Sum_probs=430.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHH
Q 000481 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1467)
Q Consensus 938 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~ 1017 (1467)
...++++.++..++.+++.++....+.+....++..+++++++.|++||++.++|++++|++ |++.+...+...+...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~ 257 (686)
T TIGR03797 179 ALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTL 257 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHH
Confidence 34455556667788889999999999999999999999999999999999999999999997 78888887777666666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHH
Q 000481 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1467)
Q Consensus 1018 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~ 1097 (1467)
..++..+..+++++..+|.+.++++.+++++..+.....+..+...+......+...+++.|+++|+.|||+|+.++++.
T Consensus 258 ~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~ 337 (686)
T TIGR03797 258 LSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAF 337 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHH
Confidence 66666667777788888888766655544444443333333333333333445677899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176 (1467)
Q Consensus 1098 ~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~ 1176 (1467)
+++.+..+...+..+.......|......++..+...+. .+..+++..|.++.|.+-.+.++...+..++..+...+.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~ 417 (686)
T TIGR03797 338 ARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLIS 417 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888877777666666666555554443333222 2233445678899998888888888999999999999999
Q ss_pred HHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcH
Q 000481 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256 (1467)
Q Consensus 1177 le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGK 1256 (1467)
+.....+.+|+.++++.|+|.+. +..++ .+..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+|||||
T Consensus 418 ~~~~~~~~~ri~~~l~~~~e~~~---~~~~~--~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGK 492 (686)
T TIGR03797 418 ILAVIPLWERAKPILEALPEVDE---AKTDP--GKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGK 492 (686)
T ss_pred HHHHHHHHHHHHHHhcCCccccc---CcCCC--CCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCH
Confidence 99999999999999987766431 11111 23457899999999997666789999999999999999999999999
Q ss_pred HHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHh
Q 000481 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTIS 1336 (1467)
Q Consensus 1257 STL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~ 1336 (1467)
|||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||||.+|+|||||||..++.++|+|+++|++.+++++++.
T Consensus 493 STLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~ 572 (686)
T TIGR03797 493 STLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIR 572 (686)
T ss_pred HHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998766689999999999999999999
Q ss_pred hCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc
Q 000481 1337 SLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID 1416 (1467)
Q Consensus 1337 ~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~ 1416 (1467)
++|+|+||++||+|.|||||||||++||||++++|+|||||||||+||++||+.|++.|++. ++|+|+||||++++.+
T Consensus 573 ~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~ 650 (686)
T TIGR03797 573 AMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRN 650 (686)
T ss_pred hccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999986 6899999999999999
Q ss_pred cCEEEEEeCCEEEEecChhHHhccCChhHHHHHH
Q 000481 1417 SDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAE 1450 (1467)
Q Consensus 1417 ~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~ 1450 (1467)
||||+|||+|+|+|.|+|+||++++|.|++|+++
T Consensus 651 ~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~ 684 (686)
T TIGR03797 651 ADRIYVLDAGRVVQQGTYDELMAREGLFAQLARR 684 (686)
T ss_pred CCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHh
Confidence 9999999999999999999999999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-76 Score=773.37 Aligned_cols=558 Identities=21% Similarity=0.281 Sum_probs=453.2
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhccc--Cc--cc-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PK--IT-SGILIGVYAGVSTASAVFVYFRSFFAA 960 (1467)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~--~~--~~-~~~~~~~y~~l~~~~~~~~~~~~~~~~ 960 (1467)
++.++.+++..+.... ..+++.++...+..+.++.+....+. ++ .. ...+...++++.++..++.+++.++..
T Consensus 142 ~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 142 LRALWRRLRGSRGALL--YLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666654333222 22222233333444455555544431 11 11 112334445555667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000481 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1467)
Q Consensus 961 ~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1040 (1467)
..+.+....++.++++++++.|++||++.++|++++|++.| +.+...+...+...+..++.+++.+++++..+|.+.++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 56777777777777777777888888888889988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1467)
Q Consensus 1041 ~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1467)
.+.+++++.++..++.+..++..+......+...+++.|+++|+.+||++|.++.+.+++.+..+...+..........|
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQI 378 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555555555555545556667889999999999999999999999999988777766665555555555
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000481 1121 LILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1467)
Q Consensus 1121 l~~rl~~~~~~~~~~~-~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~ 1199 (1467)
......++..+..++. .+..+++..|.++.|.+..+.++...+..++..+...+.++.....+.+|+.++++.|+|.+.
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 5544444443332222 223345567889999999999999999999999999999999999999999999988776532
Q ss_pred CcCC--C-CCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEE
Q 000481 1200 IVED--K-RPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276 (1467)
Q Consensus 1200 ~~~~--~-~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~I 1276 (1467)
.... . .....++..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|.+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 1100 0 011113456899999999999876677999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCCh
Q 000481 1277 DGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSA 1355 (1467)
Q Consensus 1277 DG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~ 1355 (1467)
||+|+++++.+++|++|++|||||.+|+|||||||..++ +++|+++++|++.+++++++.++|+|+||.++|+|.||||
T Consensus 539 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSG 618 (710)
T TIGR03796 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSG 618 (710)
T ss_pred CCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCH
Confidence 999999999999999999999999999999999997654 5899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChh
Q 000481 1356 GQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPS 1435 (1467)
Q Consensus 1356 GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~ 1435 (1467)
||||||+||||++++|+|||||||||+||.+||+.|.+.+++ .++|+|+||||++++.+||||+|||+|+|+|.|+|+
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~ 696 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHE 696 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999987 589999999999999999999999999999999999
Q ss_pred HHhccCChhHHHH
Q 000481 1436 KLMETNSSFSKLV 1448 (1467)
Q Consensus 1436 ~Ll~~~~~f~~lv 1448 (1467)
||++++|.|++|+
T Consensus 697 ~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 697 ELWAVGGAYARLI 709 (710)
T ss_pred HHHHcCCcHHHHh
Confidence 9999999999986
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-76 Score=755.25 Aligned_cols=506 Identities=25% Similarity=0.375 Sum_probs=423.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 000481 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1467)
Q Consensus 941 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~ 1020 (1467)
++++.++..++.+.+.++....+.+...+++.++++++++.|.+||+..+.|++++|+++|++.++..+...+..++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~ 150 (592)
T PRK10790 71 YVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556677788888889999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHH
Q 000481 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNY 1100 (1467)
Q Consensus 1021 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~ 1100 (1467)
+.+++.++++++.+|.+.++.+..+++...+...+.+..+...+......+...+++.|+++|+.+||+|+.++++.+++
T Consensus 151 ~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~ 230 (592)
T PRK10790 151 ALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERM 230 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHH
Confidence 88888888888888887655443333222233333333333334344455677899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1101 LKLVDIDASLFFHTNGVMEWL-ILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLAN 1179 (1467)
Q Consensus 1101 ~~~~d~~~~~~~~~~~~~~wl-~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~ 1179 (1467)
.+..+...+..+.......+. .....++..+..++..+.......|.++.|.+..++.|...+..++..+...+..+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~ 310 (592)
T PRK10790 231 GEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQ 310 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887665555433332222221 1112222222211111111123468889999989999999999999999999999999
Q ss_pred HhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHH
Q 000481 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259 (1467)
Q Consensus 1180 ~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL 1259 (1467)
...+.+|+.++.+.++++.. .. ..++..|.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||
T Consensus 311 ~~~s~~ri~~~l~~~~~~~~---~~---~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTL 383 (592)
T PRK10790 311 AVVAGERVFELMDGPRQQYG---ND---DRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTL 383 (592)
T ss_pred HHHHHHHHHHHhcCCCccCC---CC---ccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHH
Confidence 99999999999886654321 11 112345789999999999754 569999999999999999999999999999
Q ss_pred HHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCC
Q 000481 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLP 1339 (1467)
Q Consensus 1260 ~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp 1339 (1467)
+++|+|+|+|++|+|.+||+|+++++.+.+|++|+||||||.+|+||||+||..++.++|+++++|++++|+++++.++|
T Consensus 384 l~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp 463 (592)
T PRK10790 384 ASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLP 463 (592)
T ss_pred HHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999887889999999999999999999999
Q ss_pred CCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCE
Q 000481 1340 NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDM 1419 (1467)
Q Consensus 1340 ~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~Dr 1419 (1467)
+||||.++|+|.+||||||||+|||||++++|+|||||||||+||++|++.|++.|++..++||+|+||||++++..||+
T Consensus 464 ~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ 543 (592)
T PRK10790 464 DGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADT 543 (592)
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred EEEEeCCEEEEecChhHHhccCChhHHHHHHHHH
Q 000481 1420 VMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYWS 1453 (1467)
Q Consensus 1420 IlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~~~ 1453 (1467)
|++|++|+++|.|+|+||+++++.|++|++.+..
T Consensus 544 ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~~ 577 (592)
T PRK10790 544 ILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQLA 577 (592)
T ss_pred EEEEECCEEEEEcCHHHHHhCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999986644
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-76 Score=770.48 Aligned_cols=556 Identities=21% Similarity=0.278 Sum_probs=445.3
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhccc--Cccc--h-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PKIT--S-GILIGVYAGVSTASAVFVYFRSFFAA 960 (1467)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~--~~~~--~-~~~~~~y~~l~~~~~~~~~~~~~~~~ 960 (1467)
+..++.|++..+... ...+++.++...+.++.++++....+. ++.. . ..+...++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKLI--VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665433332 222333333344555566666665542 1111 1 12233344455566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000481 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1467)
Q Consensus 961 ~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1040 (1467)
+.+.+...+++.++++++++.|+.||++.++|++++|++ |.+.+...+...+...+..++.++..++++++.+|.+.++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 300 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLL 300 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998 7777766665555555555566666667777888887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1467)
Q Consensus 1041 ~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1467)
++..++++..+...+.+..++..+......+...+++.|+++|+.|||+||.++++.+++.+..+...+..+.......+
T Consensus 301 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (708)
T TIGR01193 301 SLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQG 380 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555555555555555555666677889999999999999999999999999888777665554443333322
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000481 1121 LILRVEALQNLTL-FTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1467)
Q Consensus 1121 l~~rl~~~~~~~~-~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~ 1199 (1467)
......++..+.. ++..+...++..|.++.|.+..+.++...+..++..+...+..+.....+++|+.++.+.|+|.+.
T Consensus 381 ~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 460 (708)
T TIGR01193 381 QQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFIN 460 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 2222222222211 122233345568899999999999999999999999999999999999999999999988776532
Q ss_pred CcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCe
Q 000481 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV 1279 (1467)
Q Consensus 1200 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~ 1279 (1467)
.. .....++..|.|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 461 ~~---~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~ 536 (708)
T TIGR01193 461 KK---KRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536 (708)
T ss_pred cc---cccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCE
Confidence 11 111224457899999999999643 56999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhhccEEeccCCcccccchHHhcCCC--CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1280 DICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1280 dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~--~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
|+++++.+++|++|+||||||.||+|||||||... ..++|+++++|++.+++++++.++|+||||.++|+|.+|||||
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQ 616 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHH
Confidence 99999999999999999999999999999999765 3589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHH
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
||||+||||++++|+|||||||||+||++||+.|++.|++ .+++|+|+||||++++..||+|+||++|+++|.|+|+||
T Consensus 617 rQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~-~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L 695 (708)
T TIGR01193 617 KQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDEL 695 (708)
T ss_pred HHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH-hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999987 478999999999999999999999999999999999999
Q ss_pred hccCChhHHHHH
Q 000481 1438 METNSSFSKLVA 1449 (1467)
Q Consensus 1438 l~~~~~f~~lv~ 1449 (1467)
++++|.|++|++
T Consensus 696 ~~~~~~y~~l~~ 707 (708)
T TIGR01193 696 LDRNGFYASLIH 707 (708)
T ss_pred HhcCCcHHHHhh
Confidence 999999999874
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-77 Score=754.99 Aligned_cols=512 Identities=23% Similarity=0.305 Sum_probs=421.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHH
Q 000481 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015 (1467)
Q Consensus 936 ~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~ 1015 (1467)
.+...|+.++++..+..++...++.+.+.|...+++.+.+++++|++++|||++..|.+..|+++|++.+++.+...+..
T Consensus 72 ~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~ 151 (1228)
T KOG0055|consen 72 KVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGN 151 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHH
Confidence 44556667777777888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHH
Q 000481 1016 VAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDR 1095 (1467)
Q Consensus 1016 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~ 1095 (1467)
++..+..+++.+++.++..|.+.++.++..++..+....+.+..-.....+..+.+..-+...|++.+++|+.||+.|++
T Consensus 152 ~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~ 231 (1228)
T KOG0055|consen 152 FIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKK 231 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHH
Confidence 99999999999999999999998887766666555554444443333344444455667889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1096 FFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV----LIPRGYVAPGLVGLSLSYAFTLTGTQVFLS 1171 (1467)
Q Consensus 1096 f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~----~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~ 1171 (1467)
..++|.+.++...+...... -|.++-..+...+.....++.++ ++..+..++|.+...+...+.-...+....
T Consensus 232 e~~ry~~~L~~~~k~gi~~g---~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~ 308 (1228)
T KOG0055|consen 232 EIERYSKALENALKFGIKKG---LFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQAS 308 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccc
Confidence 99999999887766543322 12222222221122222222222 233455666654444433333333444445
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCC-CcceeceeEEeeCCcEEEEEc
Q 000481 1172 RWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNA-PLVLKGITCTFSEGTRVGVVG 1250 (1467)
Q Consensus 1172 ~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vLk~is~~I~~GekVgIVG 1250 (1467)
-....+.+...|..++.+.++..+.........+.. -..+|.|||+||+|+|+... .++|+|+||+|++||.||+||
T Consensus 309 p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~--~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG 386 (1228)
T KOG0055|consen 309 PHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVL--SSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVG 386 (1228)
T ss_pred cchHHHhccccchHHHHHHhcCCCCCCcccccCCcc--cccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEEC
Confidence 556677788899999999887644432211122121 12579999999999995332 369999999999999999999
Q ss_pred CCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHc
Q 000481 1251 RTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKC 1329 (1467)
Q Consensus 1251 rTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~ 1329 (1467)
+|||||||++++|.|+|+|++|+|+|||.||.+++.++||++||+|.|||+||++||+|||.... +.|++|+.+|++.+
T Consensus 387 ~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~a 466 (1228)
T KOG0055|consen 387 PSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAA 466 (1228)
T ss_pred CCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999997443 47899999999999
Q ss_pred CCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Q 000481 1330 QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAH 1409 (1467)
Q Consensus 1330 ~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAH 1409 (1467)
+.++|+..+|+||||.|||+|..|||||||||||||||+|+|+||+||||||+||+++|+.+|++|++..+|+|.|+|||
T Consensus 467 na~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaH 546 (1228)
T KOG0055|consen 467 NAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAH 546 (1228)
T ss_pred cHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHHH
Q 000481 1410 RVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYW 1452 (1467)
Q Consensus 1410 Rl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~~ 1452 (1467)
||+||+++|+|+||++|+|+|.|+|+||++.+|.|++||+-+.
T Consensus 547 RLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 547 RLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQE 589 (1228)
T ss_pred ehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHh
Confidence 9999999999999999999999999999997799999997553
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-75 Score=743.18 Aligned_cols=506 Identities=20% Similarity=0.304 Sum_probs=436.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 000481 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1467)
Q Consensus 941 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~ 1020 (1467)
++++.++..++.+++.++....+.+....++..+++++++.|.++|++...|++++|+++|++.+...+...+..++..+
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566777788888888899999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHH
Q 000481 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNY 1100 (1467)
Q Consensus 1021 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~ 1100 (1467)
+.+++.++++++.+|.+.++++..+++..++.....+..++..+......+...+++.|.++|+.+||+|+.++.+.+++
T Consensus 151 ~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~ 230 (582)
T PRK11176 151 ASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF 230 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHH
Confidence 88888888888888887776665555554444444444444444444556778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1101 LKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLAN 1179 (1467)
Q Consensus 1101 ~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~ 1179 (1467)
.+..+...+..........|.....+++..+..... .+....+..|.++.|.+..++++...+..++..+...+..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 310 (582)
T PRK11176 231 DKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888777666655555555555555444333222 2223345568899999999999999999999999999999999
Q ss_pred HhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHH
Q 000481 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259 (1467)
Q Consensus 1180 ~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL 1259 (1467)
...+.+|+.++.+.+++.+.. .. ...|..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||
T Consensus 311 ~~~~~~ri~~~~~~~~~~~~~--~~---~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTL 385 (582)
T PRK11176 311 GMAACQTLFAILDLEQEKDEG--KR---VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTI 385 (582)
T ss_pred HHHHHHHHHHHhcCCCcCCCC--Cc---CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHH
Confidence 999999999999876553211 11 1123457899999999997666779999999999999999999999999999
Q ss_pred HHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCC--CCCCHHHHHHHHHHcCCchHHhh
Q 000481 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--GLYSDDEIWKALEKCQLKTTISS 1337 (1467)
Q Consensus 1260 ~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~--~~~sd~ei~~aL~~~~l~~~i~~ 1337 (1467)
+++|+|+++|++|+|++||+|+++++.+++|++|+||||||++|+||||+||... +.++|+|++++++.+++++++++
T Consensus 386 l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~ 465 (582)
T PRK11176 386 ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINK 465 (582)
T ss_pred HHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999743 24799999999999999999999
Q ss_pred CCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhccc
Q 000481 1338 LPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDS 1417 (1467)
Q Consensus 1338 lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~ 1417 (1467)
+|+||||.+||+|.+|||||||||+||||++++|+|||||||||+||++|++.|.+.|++..++||+|+||||++++.+|
T Consensus 466 lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~ 545 (582)
T PRK11176 466 MDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKA 545 (582)
T ss_pred cccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CEEEEEeCCEEEEecChhHHhccCChhHHHHHHH
Q 000481 1418 DMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451 (1467)
Q Consensus 1418 DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~ 1451 (1467)
|+|++|++|+|+|.|+|++|+++++.|++|++++
T Consensus 546 D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~~ 579 (582)
T PRK11176 546 DEILVVEDGEIVERGTHAELLAQNGVYAQLHKMQ 579 (582)
T ss_pred CEEEEEECCEEEEeCCHHHHHhCCChHHHHHHHH
Confidence 9999999999999999999999999999998754
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-75 Score=737.13 Aligned_cols=504 Identities=19% Similarity=0.238 Sum_probs=419.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 000481 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1467)
Q Consensus 941 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~ 1020 (1467)
+.++.++..++.++..++....+.+....++.++++++++.|+.||++.++|++++|+++|++.++..+...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667778888888889999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHH
Q 000481 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAV-RFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099 (1467)
Q Consensus 1021 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~ 1099 (1467)
+.+++.++++++.+|.+.++++..+++. ..+..++.+..+...+......+.+.+.+.|+++|+.+||+|+.++++.++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 8888888889999998877654333322 223344444444444555566677889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 000481 1100 YLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAF-TLTGTQVFLSRWYCYLA 1178 (1467)
Q Consensus 1100 ~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~-~l~~~~~~~~~~~~~le 1178 (1467)
+.+..++..+..........+.....+++..+.......+......+.++.|.+..++.|.. ....++..+...+..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~ 305 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLG 305 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877666555544444444444444333322222221111356677776655555543 33456666777888889
Q ss_pred HHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHH
Q 000481 1179 NYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT 1258 (1467)
Q Consensus 1179 ~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKST 1258 (1467)
....+.+|+.++.+.+++.+... ..++ .+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+|||||||
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~~~--~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKST 381 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTFPT--TSTA--AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKST 381 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCc--ccCC--CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHH
Confidence 99999999999998766532111 1111 1345789999999999765557999999999999999999999999999
Q ss_pred HHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhh
Q 000481 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISS 1337 (1467)
Q Consensus 1259 L~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~ 1337 (1467)
|+++|.|+++|++|+|.+||+|+++++.+++|++|++|||||.+|+|||||||.... +.+|+++++|++.+++++++.+
T Consensus 382 L~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~ 461 (574)
T PRK11160 382 LLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED 461 (574)
T ss_pred HHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC
Confidence 999999999999999999999999999999999999999999999999999996543 5799999999999999999999
Q ss_pred CCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhccc
Q 000481 1338 LPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDS 1417 (1467)
Q Consensus 1338 lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~ 1417 (1467)
|+||||.+||+|.+||||||||+|||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+|
T Consensus 462 -p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~ 540 (574)
T PRK11160 462 -DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF 540 (574)
T ss_pred -ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CEEEEEeCCEEEEecChhHHhccCChhHHHHH
Q 000481 1418 DMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449 (1467)
Q Consensus 1418 DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~ 1449 (1467)
|+|+||++|+++|.|+|+||++++|.|++|++
T Consensus 541 d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 541 DRICVMDNGQIIEQGTHQELLAQQGRYYQLKQ 572 (574)
T ss_pred CEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHh
Confidence 99999999999999999999999999999875
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-74 Score=751.90 Aligned_cols=495 Identities=22% Similarity=0.307 Sum_probs=419.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHH
Q 000481 940 VYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAAS 1019 (1467)
Q Consensus 940 ~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~ 1019 (1467)
.++++.++..++.+++.++..+.+.+...+++..+++++++.|++| ++.++|++++|+ +|++.+...+...+...+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~ 269 (694)
T TIGR03375 192 GVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALID 269 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHH
Confidence 3444455667788889999999999999999999999999999998 788999999999 79999998887776666666
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHH
Q 000481 1020 GTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099 (1467)
Q Consensus 1020 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~ 1099 (1467)
++.++..++++++.+|.+.++.+..++++..+..++.+..++..+......+...+++.|+++|+.+||+|+.|+.+.++
T Consensus 270 ~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 349 (694)
T TIGR03375 270 LPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRR 349 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHH
Confidence 66666677777888888776655554444444444444444554545556678889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1100 YLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLF-TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLA 1178 (1467)
Q Consensus 1100 ~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~-~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le 1178 (1467)
+.+..+...+..+.......+......++..+... +..+...++..|.++.|.+..++++...+..++..+...+.++.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~ 429 (694)
T TIGR03375 350 WEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQ 429 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888777666555544444433333333322222 22223344567889999998899999999999999999999999
Q ss_pred HHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHH
Q 000481 1179 NYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTT 1258 (1467)
Q Consensus 1179 ~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKST 1258 (1467)
....+.+|+.++.+.++|.+... ......+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+|||||||
T Consensus 430 ~~~~~~~ri~~il~~~~e~~~~~---~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKST 506 (694)
T TIGR03375 430 QAKTALQSLDELMQLPVERPEGT---RFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKST 506 (694)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCC---CCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHH
Confidence 99999999999998877643211 111112346789999999999766667999999999999999999999999999
Q ss_pred HHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhh
Q 000481 1259 LISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISS 1337 (1467)
Q Consensus 1259 L~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~ 1337 (1467)
|+++|+|+|+|++|+|.+||+|+++++++++|++|++|||||.+|+|||||||...+ +++|+|+++|++.+++++++.+
T Consensus 507 LlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~ 586 (694)
T TIGR03375 507 LLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRR 586 (694)
T ss_pred HHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998654 3899999999999999999999
Q ss_pred CCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhccc
Q 000481 1338 LPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDS 1417 (1467)
Q Consensus 1338 lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~ 1417 (1467)
+|+||||.+||+|.|||||||||++||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++.+|
T Consensus 587 lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~ 666 (694)
T TIGR03375 587 HPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLV 666 (694)
T ss_pred CcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred CEEEEEeCCEEEEecChhHHhc
Q 000481 1418 DMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1418 DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|+|+||++|+++|.|+|+||++
T Consensus 667 D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 667 DRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred CEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999997
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-74 Score=680.04 Aligned_cols=512 Identities=20% Similarity=0.265 Sum_probs=428.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHH
Q 000481 935 GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIV 1014 (1467)
Q Consensus 935 ~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~ 1014 (1467)
..+++..++..++..+..+.+..+..+.+.++...++..+++++.+.+..|-...|+|++....+..++.++..+...++
T Consensus 40 ~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLP 119 (559)
T COG4988 40 LPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLP 119 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777778888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcc
Q 000481 1015 FVAASGTELLAIIGIMTFVTWQVLVV---AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFN 1091 (1467)
Q Consensus 1015 ~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~ 1091 (1467)
.+..+.+..+..++.+++.+|...++ +.|+++++.++... .++...+..-.+...+.+||.+.++|+.|+|+|+
T Consensus 120 q~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~---~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~ 196 (559)
T COG4988 120 QMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGL---AAKDASEKQFSALARLSGHFLDRLRGLETLRAFG 196 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhc
Confidence 99999999999999999999986554 45665555443221 2222222233344567899999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc-CcccHHHHHHHHHHHHHHHHHHHH
Q 000481 1092 MVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVL-IPR-GYVAPGLVGLSLSYAFTLTGTQVF 1169 (1467)
Q Consensus 1092 ~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~-~~~-~~~~~g~~g~~l~~~~~l~~~~~~ 1169 (1467)
..+...++..+...+..+.........---+..+|++..+.+..+++.+.+ ... |.++-...-+++.-+--+..++..
T Consensus 197 ~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~ 276 (559)
T COG4988 197 RTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRD 276 (559)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHH
Confidence 988887777766665555443333322223345566655555444443322 223 566655555666677788899999
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEE
Q 000481 1170 LSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVV 1249 (1467)
Q Consensus 1170 ~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIV 1249 (1467)
+...|+.-.+...+.+++..+.+.|.+.+... ......|..+.+|+.+|++++|+++. ++++|+||+++|||++|||
T Consensus 277 lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~--~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talv 353 (559)
T COG4988 277 LGSFFHAAAAGEAAADKLFTLLESPVATPGSG--EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALV 353 (559)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCc--cccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEE
Confidence 99999999999999999999998776643221 11123343345677779999997654 7999999999999999999
Q ss_pred cCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCC-CCHHHHHHHHHH
Q 000481 1250 GRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL-YSDDEIWKALEK 1328 (1467)
Q Consensus 1250 GrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~-~sd~ei~~aL~~ 1328 (1467)
|+||||||||+++|.|+.+|++|+|.+||+|..+++.+++|+++++|||+|++|+|||||||...+. .+|+||++|+++
T Consensus 354 G~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~ 433 (559)
T COG4988 354 GASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQ 433 (559)
T ss_pred CCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999975543 789999999999
Q ss_pred cCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEc
Q 000481 1329 CQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVA 1408 (1467)
Q Consensus 1329 ~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IA 1408 (1467)
+++.+++.. |+||||++||+|.+|||||+||++||||++++++++++|||||+||.|||+.|++.|.+.++++|||+||
T Consensus 434 a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~it 512 (559)
T COG4988 434 AGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVIT 512 (559)
T ss_pred hcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEE
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHHHH
Q 000481 1409 HRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYWS 1453 (1467)
Q Consensus 1409 HRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~~~ 1453 (1467)
||++.+.++|+|+|||+|+++|.|+|++|.+++|.|++|++++..
T Consensus 513 Hrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~ 557 (559)
T COG4988 513 HRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557 (559)
T ss_pred cChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999987643
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-74 Score=668.27 Aligned_cols=534 Identities=20% Similarity=0.289 Sum_probs=436.1
Q ss_pred HHHHHhhhhhhHHHHhhcccCc-cchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 000481 910 SGFVGLQAAATYWLAYAIQIPK-ITSGIL--IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFF 986 (1467)
Q Consensus 910 ~~~~~~~~~~~~wl~~~~~~~~-~~~~~~--~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ff 986 (1467)
....++...+.|.++...-.+. ...+++ ....-++++...+..|+..++.+....++-..++.++++++...+..-.
T Consensus 30 lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~ 109 (573)
T COG4987 30 LASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALL 109 (573)
T ss_pred HHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHH
Confidence 3344555567777765432221 111111 1222355677788889999999999999999999999999999999999
Q ss_pred ccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 987 DSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV-AIFAMVAVRFVQRYYIATARELIRI 1065 (1467)
Q Consensus 987 d~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~y~~~~r~l~rl 1065 (1467)
.....|+++||+..|++.+|...-..+...+..+...+++.+...+.+|.+.+. .+.+++....+...+.+..|...+.
T Consensus 110 ~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~ 189 (573)
T COG4987 110 LRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAH 189 (573)
T ss_pred HhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 999999999999999999999988888887777777777766676777776543 3333444444455555555666666
Q ss_pred hccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Q 000481 1066 NGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT-AALFLVLIP 1144 (1467)
Q Consensus 1066 ~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~-~~~~~~~~~ 1144 (1467)
-...+..+.+++.|.+.|....+.||++++|.+.+.+..+...+..........|-...+.++..+.+.. .........
T Consensus 190 l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~ 269 (573)
T COG4987 190 LAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVG 269 (573)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 6667788999999999999999999999999999999888888888888888888887777666655442 222222233
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcc-eEEEEEEE
Q 000481 1145 RGYVAPGLVGLSLSYAFTLTGTQVFLS-RWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKG-RIELRQLK 1222 (1467)
Q Consensus 1145 ~~~~~~g~~g~~l~~~~~l~~~~~~~~-~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g-~I~f~nvs 1222 (1467)
.|..+.-.+.+++..++.....+.-+. ..+.++.....|.+|+.+..+.++|.... .+. -|..+ .++++||+
T Consensus 270 ~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~-~~~-----~~~~~~~l~~~~vs 343 (573)
T COG4987 270 AGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP-DEQ-----TATTGQALELRNVS 343 (573)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC-ccc-----cCCccceeeeccce
Confidence 444442223333333344444444455 55678889999999999998877665432 111 11222 79999999
Q ss_pred EEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcc
Q 000481 1223 IRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302 (1467)
Q Consensus 1223 ~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~L 1302 (1467)
|+|+.+.++||+|+||++++||||||+||||||||||+++|.|-++|++|+|..+|+|++.++.+++|+.|++++|.+.|
T Consensus 344 F~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl 423 (573)
T COG4987 344 FTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL 423 (573)
T ss_pred eecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHH
Confidence 99998888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHhcCCC-CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q 000481 1303 FRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381 (1467)
Q Consensus 1303 F~gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs 1381 (1467)
|+||+|+||..- .+.||||+|+||++++|++++++.|+||||.+||+|.+||||||||++|||+||++.++++|||||.
T Consensus 424 F~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTe 503 (573)
T COG4987 424 FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTE 503 (573)
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcc
Confidence 999999999532 2489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHH
Q 000481 1382 SIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449 (1467)
Q Consensus 1382 ~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~ 1449 (1467)
+||++||+.|.+.|.+..+|+|+|+||||+..+..||||+|||+|+++|+|+|++|++++|.|++|++
T Consensus 504 gLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 504 GLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred cCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999865
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-73 Score=729.33 Aligned_cols=509 Identities=21% Similarity=0.354 Sum_probs=450.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHH
Q 000481 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1467)
Q Consensus 938 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~ 1017 (1467)
..+++++.++..++.+++.++....+.+....++..+++++++.|.++|++.+.|++++|+++|++.++..+...+..++
T Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i 136 (571)
T TIGR02203 57 PLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLV 136 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777888899999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHH
Q 000481 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1467)
Q Consensus 1018 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~ 1097 (1467)
..++.+++.++++++.+|.+.++++.++++..++...+.+..++..+......++..+.+.|+++|+.+||+++.++++.
T Consensus 137 ~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~ 216 (571)
T TIGR02203 137 RETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYET 216 (571)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHH
Confidence 88999999999999999998888777777777777777766677666677777889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT-AALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176 (1467)
Q Consensus 1098 ~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~-~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~ 1176 (1467)
+++.+..+...+..........+.....+++..+...+ ..+....+..|.+++|.+..+.+++..+..++..+...+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~ 296 (571)
T TIGR02203 217 RRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAP 296 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887776666655555555545444333222 22233445678899999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcH
Q 000481 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256 (1467)
Q Consensus 1177 le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGK 1256 (1467)
+.....+.+|+.++++.+++.+.. ..+.. +..+.|+++||+|+|+++.+++|+|+||+|+|||+|+|+|+|||||
T Consensus 297 ~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~--~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGK 371 (571)
T TIGR02203 297 MQRGLAAAESLFTLLDSPPEKDTG---TRAIE--RARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGK 371 (571)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCC---CCCCC--CCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCH
Confidence 999999999999999876654321 11111 2357899999999997655679999999999999999999999999
Q ss_pred HHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC--CCCHHHHHHHHHHcCCchH
Q 000481 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG--LYSDDEIWKALEKCQLKTT 1334 (1467)
Q Consensus 1257 STL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~--~~sd~ei~~aL~~~~l~~~ 1334 (1467)
|||+++|.|+++|++|+|++||+|+++++.+++|++++|+||||.+|+||||+||..+. +.+|++++++++.++++++
T Consensus 372 STLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~ 451 (571)
T TIGR02203 372 STLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDF 451 (571)
T ss_pred HHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHH
Confidence 99999999999999999999999999999999999999999999999999999997553 5899999999999999999
Q ss_pred HhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhh
Q 000481 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTV 1414 (1467)
Q Consensus 1335 i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti 1414 (1467)
+.++|+||||+++|+|.+||||||||+|||||++++|+||+||||||+||.+|++.|.+.|++..+++|+|+||||++.+
T Consensus 452 i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~ 531 (571)
T TIGR02203 452 VDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTI 531 (571)
T ss_pred HHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred cccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHH
Q 000481 1415 IDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451 (1467)
Q Consensus 1415 ~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~ 1451 (1467)
..||+|++|++|+++|.|+|++|+++++.|++++..+
T Consensus 532 ~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~ 568 (571)
T TIGR02203 532 EKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568 (571)
T ss_pred HhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHHHh
Confidence 9999999999999999999999999889999887643
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-73 Score=740.75 Aligned_cols=559 Identities=23% Similarity=0.322 Sum_probs=450.2
Q ss_pred cHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhccc--Cc--cc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 885 GWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI--PK--IT-SGILIGVYAGVSTASAVFVYFRSFFA 959 (1467)
Q Consensus 885 ~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~--~~--~~-~~~~~~~y~~l~~~~~~~~~~~~~~~ 959 (1467)
+++.++.+++..+.... ..++..++...+..+.++.+....+. +. .. ...+...++++.++..++.+++.++.
T Consensus 126 ~~~~~~~~~~~~~~~~~--~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQFR--EVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred cHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666553333222 22222223333344455555544432 11 11 11233344555566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000481 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1467)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 1039 (1467)
...+.+....++.++++++++.|+.||++.++|++++|+ +|++.+...+...+..++..++.++..++++++.+|.+.+
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 282 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTG 282 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 6999999887776666665555556667778888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1467)
Q Consensus 1040 ~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1467)
+++..++++..+..+..+..+...+...+..+...+++.|+++|+.+||+||.++.+.+++.+..+...+..+.......
T Consensus 283 i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR01846 283 VVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555444444433333333333333334556778999999999999999999999999999988877776666555555
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC
Q 000481 1120 WLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP 1198 (1467)
Q Consensus 1120 wl~~rl~~~~~~~~~~~-~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~ 1198 (1467)
+......++..+...+. .+...++..|.++.|.+..+.+++..+..++..+...+.+++....+.+|+.++++.|+|.+
T Consensus 363 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 442 (694)
T TIGR01846 363 IAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR 442 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 55555554444333222 22334456788999999888999999999999999999999999999999999998876643
Q ss_pred CCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECC
Q 000481 1199 AIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1467)
Q Consensus 1199 ~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG 1278 (1467)
.. ...+. -+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|++||
T Consensus 443 ~~--~~~~~--~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 443 SA--GLAAL--PELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred CC--CCCCC--CCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 21 11111 123578999999999987666799999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1279 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
+|+++++.+++|+++++|||||.+|+|||||||...+ +++|+++++|++.+++++++.++|+||||.++|+|.+|||||
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 9999999999999999999999999999999997543 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHH
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
|||++||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++++..||+|+||++|+++|.|+|++|
T Consensus 599 ~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hccCChhHHHHHH
Q 000481 1438 METNSSFSKLVAE 1450 (1467)
Q Consensus 1438 l~~~~~f~~lv~~ 1450 (1467)
++++|.|++|+++
T Consensus 679 ~~~~~~y~~l~~~ 691 (694)
T TIGR01846 679 LALQGLYARLWQQ 691 (694)
T ss_pred HHcCChHHHHHHh
Confidence 9999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-73 Score=723.50 Aligned_cols=544 Identities=21% Similarity=0.248 Sum_probs=425.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1467)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1467)
++.+.+.+++.+++..++.++..++..+.|++++.++|....+.......+.+++++++..++..++.....+...+.+.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (588)
T PRK11174 13 LKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQ 92 (588)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888899999999999999999999999753211112222233334444555566666666667778999
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1467)
Q Consensus 348 ~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~ 426 (1467)
++...++..+|+|.++++...+++.++|+++|++++|++++.++.. .+..++...+..++++++++.+-.+.+++.+++
T Consensus 93 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 172 (588)
T PRK11174 93 HIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGT 172 (588)
T ss_pred HHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998653 345555555555555555444333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 000481 427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLI----ESRREKEFKWLSEAQLRKAY 502 (1467)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i----~~~R~~E~~~l~~~~~~~~~ 502 (1467)
+++...+...+.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.++. ++.++.+.+..+.......+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (588)
T PRK11174 173 APLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAV 252 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445567788888888899999999999999999999999999998776655 44454444433332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000481 503 GTVIYWMSPTIISSVIFLGCALTGSAPLNA---------STIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573 (1467)
Q Consensus 503 ~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~---------~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL 573 (1467)
..++..+ + .+.++.++++... +.+|. ..+++++.+...+..|+..++..+..+.+++++.+|+.+++
T Consensus 253 ~~~~~~~-~-~~~~~~~~~~~~~--g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 328 (588)
T PRK11174 253 LEFFASI-S-IALVAVYFGFSYL--GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFL 328 (588)
T ss_pred HHHHHHH-H-HHHHHHHHHHHHh--cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111111 1 1122233344333 33333 44555667778889999999999999999999999999999
Q ss_pred cCCCCCCcccccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcE
Q 000481 574 LDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1467)
Q Consensus 574 ~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~ 653 (1467)
+.++.++..............|+++|++|.|+++ +++|+|+||+|++|+++||+|+||||||||+++|+|++ |++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~ 405 (588)
T PRK11174 329 ETPLAHPQQGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS 405 (588)
T ss_pred cCCCcccCCCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence 7654322111100111123469999999887643 57999999999999999999999999999999999999 99999
Q ss_pred EEEcC-------------eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCc
Q 000481 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1467)
Q Consensus 654 i~~~g-------------~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~ 719 (1467)
|.++| +|+||||+|++|++||||||.+|++ .++++++++++.|+++++++.+|+|++|.|||+|.+
T Consensus 406 I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~ 485 (588)
T PRK11174 406 LKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485 (588)
T ss_pred EEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCC
Confidence 99988 5999999999999999999999975 899999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEe
Q 000481 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1467)
Q Consensus 720 LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1467)
||||||||++||||+++||+|+||||||||||+++++++.+ .+....+++|+|+||||++.++.||+|++|++|+|++.
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~-~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQ 564 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeec
Confidence 99999999999999999999999999999999999999976 55566689999999999999999999999999999999
Q ss_pred cChHHHHhcCchHHHHHHHh
Q 000481 800 GNYQELLLAGTAFEQLVNAH 819 (1467)
Q Consensus 800 G~~~~l~~~~~~~~~~~~~~ 819 (1467)
|+|+|++++++.|.+++..+
T Consensus 565 G~~~eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 565 GDYAELSQAGGLFATLLAHR 584 (588)
T ss_pred CCHHHHHhcchHHHHHHHHh
Confidence 99999999999999988654
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-76 Score=662.06 Aligned_cols=511 Identities=20% Similarity=0.346 Sum_probs=415.0
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhh
Q 000481 937 LIGVYAGVSTAS------AVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIP 1010 (1467)
Q Consensus 937 ~~~~y~~l~~~~------~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~ 1010 (1467)
....|+.+.+++ .++.-+|+++......-+.+.+--.+++++....+.|.-...+|+++.-..+..+.+. .+.
T Consensus 255 ~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~ 333 (790)
T KOG0056|consen 255 LVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLE 333 (790)
T ss_pred HHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHH
Confidence 344455554433 5666778888888888899999999999999999999999999999888777776666 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccccchhHhHHHHHhchhH
Q 000481 1011 FSIVFVAASGTELLAIIGIMT-FVTWQVLVVAIFAMVAVRFVQ----RYYIATARELIRINGTTKAPVMNYTAETSQGVV 1085 (1467)
Q Consensus 1011 ~~l~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~ 1085 (1467)
..+..+.-.++.+...++..+ ..+|++.++....+.+|.++. .+--+..|.+...+.++ ...-.+++-+..
T Consensus 334 yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nes----rAr~vDsllNFE 409 (790)
T KOG0056|consen 334 YVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNES----RARQVDSLLNFE 409 (790)
T ss_pred HHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhh----hhhhhhhhhcch
Confidence 443334444444444444333 467888877777777776532 22222223332233333 345678899999
Q ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCcccHHHHHHHHHHHHHHH
Q 000481 1086 TIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFL-VLIPRGYVAPGLVGLSLSYAFTLT 1164 (1467)
Q Consensus 1086 tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~-~~~~~~~~~~g~~g~~l~~~~~l~ 1164 (1467)
|+|-|++|+...++|.+.++..++..+........+...-..+..+......++. +.+..+..+.|..-+..+|.+++.
T Consensus 410 TVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy 489 (790)
T KOG0056|consen 410 TVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLY 489 (790)
T ss_pred hhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHh
Confidence 9999999999999999999999988777665555544333333222222222222 233456778888889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCc
Q 000481 1165 GTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGT 1244 (1467)
Q Consensus 1165 ~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~Ge 1244 (1467)
.+++|+...+..++++.+-.|++.++++.++|-.. .++.||- --.+|+|+|+||+|.|+|+. |||+||||+++||+
T Consensus 490 ~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd--~P~a~pl-~~~~G~i~fsnvtF~Y~p~k-~vl~disF~v~pGk 565 (790)
T KOG0056|consen 490 MPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVD--LPGAPPL-KVTQGKIEFSNVTFAYDPGK-PVLSDISFTVQPGK 565 (790)
T ss_pred CchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhc--CCCCCCc-cccCCeEEEEEeEEecCCCC-ceeecceEEecCCc
Confidence 99999999999999999999999999876555321 1122222 23579999999999999876 49999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHH
Q 000481 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIW 1323 (1467)
Q Consensus 1245 kVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~ 1323 (1467)
.||+|||||+||||++++|+|++|.++|+|.|||+||+++..+.||++||+||||.+||+.||-.||.... ..+|||+.
T Consensus 566 tvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asneevy 645 (790)
T KOG0056|consen 566 TVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVY 645 (790)
T ss_pred EEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999996322 37899999
Q ss_pred HHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcE
Q 000481 1324 KALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCT 1403 (1467)
Q Consensus 1324 ~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~T 1403 (1467)
+|.+.+++||-|.++|+|++|.|||+|-.||||||||+|+||++|++|.|++||||||+||..||+.||+++.+..+++|
T Consensus 646 aAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RT 725 (790)
T KOG0056|consen 646 AAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRT 725 (790)
T ss_pred HHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCchhhcccCEEEEEeCCEEEEecChhHHhc-cCChhHHHHHHHHHhcc
Q 000481 1404 VITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME-TNSSFSKLVAEYWSSCR 1456 (1467)
Q Consensus 1404 vI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f~~lv~~~~~~~~ 1456 (1467)
.|+|||||+||.++|.|+|+++|+|+|.|+|+||++ .+|.|++|++.+..+-+
T Consensus 726 tIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~g~ 779 (790)
T KOG0056|consen 726 TIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQAMGK 779 (790)
T ss_pred eEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999 48999999976555443
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-72 Score=702.89 Aligned_cols=546 Identities=23% Similarity=0.335 Sum_probs=456.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1467)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1467)
.++..+.-|++.+.-..+..++..+++++.|++.+.++|.+-.. ........++.++.+..+++.++...-.+....++
T Consensus 144 ~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~-~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~ 222 (709)
T COG2274 144 WFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPD-ASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLG 222 (709)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556777777788888899999999999999999976432 22333344555566666667666655566677899
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 000481 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQL---FLAIGVLFGVVGLGALPG 423 (1467)
Q Consensus 347 ~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i---~~~~~~L~~~lg~~~l~g 423 (1467)
.|+...+...+|+|.+++|..+++++++||+++++. |.++|.++... .....++.+ ++.+++++..-++.+++.
T Consensus 223 ~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~--~~l~~iiD~~~~~i~l~vm~~ys~~L~li~ 299 (709)
T COG2274 223 KRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTG--SILTLIIDLLFALIFLAVMFLYSWKLTLIV 299 (709)
T ss_pred HHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999984 78888887542 223333333 334445555556666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000481 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK-AY 502 (1467)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~-~~ 502 (1467)
++.+++.+.+..++.+.+++..++.++...++.+...|.++||++||..+.|+.+..+.++.-.+..+.-.+..... ..
T Consensus 300 l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 379 (709)
T COG2274 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77667777777888899999999999999999999999999999999999999999888887777766443333222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 000481 503 GTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1467)
Q Consensus 503 ~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 582 (1467)
..+...+..+...+++++|..++.++.+|.|.++++.++...+..|+..+.+....+++++++.+|+.++++.+..++.+
T Consensus 380 ~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 33333333344455678888888889999999999999999999999999999999999999999999999887654322
Q ss_pred cccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----
Q 000481 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1467)
Q Consensus 583 ~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---- 658 (1467)
......++..+.|+++|++|+|++++ .++|+|+|++|++||++||||+||||||||+|+|+|+|+|++|+|.++|
T Consensus 460 ~~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 460 KTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred cccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 21123344567899999999998764 4799999999999999999999999999999999999999999999998
Q ss_pred ---------eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 659 ---------~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
.|+||+|++.+|++||+|||.+|.| .+.|++.++++.++.++++..+|.|++|.|||+|.+||||||||+
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl 618 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL 618 (709)
T ss_pred hcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 4999999999999999999999998 456899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
+||||++++|+|+||||||||||+++++.+.+.+ ....+|+|+|+||||++.+++||+|+||++|+|+++|+|+|+++.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L-~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNL-LQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHH-HHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 9999999999999999999999999999998765 455678999999999999999999999999999999999999999
Q ss_pred CchHHHHHHH
Q 000481 809 GTAFEQLVNA 818 (1467)
Q Consensus 809 ~~~~~~~~~~ 818 (1467)
+|.|.+++..
T Consensus 698 ~g~y~~l~~~ 707 (709)
T COG2274 698 GGLYARLYQQ 707 (709)
T ss_pred cChHHHHHhc
Confidence 9999988754
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-72 Score=712.70 Aligned_cols=544 Identities=20% Similarity=0.270 Sum_probs=435.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhcccC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000481 905 GVLAQSGFVGLQAAATYWLAYAIQIP--KITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAP 982 (1467)
Q Consensus 905 ~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p 982 (1467)
.++..++..++....++++....+.- ......++.+++++.++..+..++......+...+....+..++++++++.|
T Consensus 24 ~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 103 (588)
T PRK13657 24 LAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLP 103 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33344444455556666666554421 1111112333333334444444444555555556666667779999999999
Q ss_pred ccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 983 MLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAREL 1062 (1467)
Q Consensus 983 ~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l 1062 (1467)
..+|++.+.|++++|+++|++.+.......+..++..++..++.+++++..+|.+.++++.+++++..+.+++.+..++.
T Consensus 104 ~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~ 183 (588)
T PRK13657 104 LAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDG 183 (588)
T ss_pred HHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877766666666666666667777778888887776666666666677777777777
Q ss_pred HHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000481 1063 IRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFT-AALFLV 1141 (1467)
Q Consensus 1063 ~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~-~~~~~~ 1141 (1467)
.+......+...+++.|+++|+.+||+|+.++.+.+++.+..+...+..........+.....+++..+..++ ..+...
T Consensus 184 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 263 (588)
T PRK13657 184 QAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAA 263 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766777788999999999999999999999999999888877766554443333333333333332222222 222334
Q ss_pred HhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEE
Q 000481 1142 LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQL 1221 (1467)
Q Consensus 1142 ~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nv 1221 (1467)
.+..|.++.|.+..++.++..+..++..+...+..+.....+.+|+.++.+.+++.+.. ....+.. +..+.|+|+||
T Consensus 264 ~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~~~~--~~~~~I~~~~v 340 (588)
T PRK13657 264 LVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-PGAIDLG--RVKGAVEFDDV 340 (588)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-CCCCCcC--CCCCeEEEEEE
Confidence 45678999999999999999999999999999999999999999999988765442211 1110111 23468999999
Q ss_pred EEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCc
Q 000481 1222 KIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301 (1467)
Q Consensus 1222 s~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~ 1301 (1467)
+|+|+++ +++|+|+||+++|||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.+++|++|+||||||.
T Consensus 341 sf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 419 (588)
T PRK13657 341 SFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAG 419 (588)
T ss_pred EEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcc
Confidence 9999643 569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCC
Q 000481 1302 LFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEAN 1380 (1467)
Q Consensus 1302 LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaT 1380 (1467)
+|+||||+||.... +.+|++++++++.+++++++.++|+|+||.++++|.+||||||||+|||||++++|+||||||||
T Consensus 420 lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpt 499 (588)
T PRK13657 420 LFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEAT 499 (588)
T ss_pred cccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999997543 57899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHHH
Q 000481 1381 ASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYW 1452 (1467)
Q Consensus 1381 s~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~~ 1452 (1467)
|+||++|++.|.+.|++..+++|+|+||||++++..||||++|++|+++|.|+|++|+++++.|++|+.+..
T Consensus 500 s~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 571 (588)
T PRK13657 500 SALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQG 571 (588)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHHhh
Confidence 999999999999999988789999999999999999999999999999999999999998999999987653
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-71 Score=710.84 Aligned_cols=512 Identities=23% Similarity=0.342 Sum_probs=431.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHH
Q 000481 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1467)
Q Consensus 938 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~ 1017 (1467)
+.+++++.++..++.+.+.++....+.+....++..+++++++.|.++|++...|++++|+++|++.++..+...+..++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~ 140 (576)
T TIGR02204 61 FAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMAL 140 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556667778888888999999999999999999999999999999999999999999999998888888878
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHH
Q 000481 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1467)
Q Consensus 1018 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~ 1097 (1467)
..++.+++.+++++..+|++.++++..+++...+...+.+..+...+.....+....+++.|.++|+.+||+|+.++.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~ 220 (576)
T TIGR02204 141 RNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAER 220 (576)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHH
Confidence 88888888888888888887666554444444444444444555555555666778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1098 QNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLF-TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176 (1467)
Q Consensus 1098 ~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~-~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~ 1176 (1467)
+++.+..+...+..........|+.....++..+... ...+....+..|.++.|.+..+..++..+..++..+...+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~ 300 (576)
T TIGR02204 221 SRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGE 300 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888876665554444444444333333222211 122223345578899999989999999999999999999999
Q ss_pred HHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCC-CcceeceeEEeeCCcEEEEEcCCCCc
Q 000481 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNA-PLVLKGITCTFSEGTRVGVVGRTGSG 1255 (1467)
Q Consensus 1177 le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vLk~is~~I~~GekVgIVGrTGsG 1255 (1467)
+.....+.+|+.++.+.++|.+... ...+..+|..+.|+|+||+|+|+++. +++|+|+||+|+|||+++|+|+||||
T Consensus 301 ~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsG 378 (576)
T TIGR02204 301 LQRAAGAAERLIELLQAEPDIKAPA--HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAG 378 (576)
T ss_pred HHHHHHHHHHHHHHhCCCCcCCCCC--CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCC
Confidence 9999999999999988765532111 11112234457899999999997533 57999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchH
Q 000481 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTT 1334 (1467)
Q Consensus 1256 KSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~ 1334 (1467)
||||+++|+|+++|++|+|.+||+|+++++.+++|++|+|+||||.+|+|||||||...+ +.+|++++++++++++.++
T Consensus 379 KSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~ 458 (576)
T TIGR02204 379 KSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEF 458 (576)
T ss_pred HHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHH
Confidence 999999999999999999999999999999999999999999999999999999998543 4789999999999999999
Q ss_pred HhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhh
Q 000481 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTV 1414 (1467)
Q Consensus 1335 i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti 1414 (1467)
+.++|+|+||+++|+|.+||||||||++||||++++|+|||||||||++|.+|++.|.+.+++..+++|+|+||||++.+
T Consensus 459 i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~ 538 (576)
T TIGR02204 459 ISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATV 538 (576)
T ss_pred HHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred cccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHH
Q 000481 1415 IDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451 (1467)
Q Consensus 1415 ~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~ 1451 (1467)
..||||++|++|+++|.|+|++|+++++.|++|++.+
T Consensus 539 ~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 539 LKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575 (576)
T ss_pred HhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHhhc
Confidence 9999999999999999999999999999999988643
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-72 Score=705.40 Aligned_cols=465 Identities=22% Similarity=0.282 Sum_probs=388.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHH
Q 000481 944 VSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTEL 1023 (1467)
Q Consensus 944 l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~ 1023 (1467)
+.++..++.++..++....+.+...+++.++++++++.|.+||++.++|++++|+++|++.++..+...+..++..++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888889999999999999999999999999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHH
Q 000481 1024 LAIIGIMTFVTWQVLVVAIFAMVAVRF-VQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLK 1102 (1467)
Q Consensus 1024 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~ 1102 (1467)
++.++++++.+|.+.++++..++++.+ ...++.+..+...+......+.+.+++.|+++|+.+||+|+.++.+.+++.+
T Consensus 142 ~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 888888888999887766555444333 3333344444444444456678899999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000481 1103 LVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYI 1181 (1467)
Q Consensus 1103 ~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~ 1181 (1467)
..+...+..........+......++..+..... .+....+..|.++.|.+...+.|+..+..++..+...+..+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (529)
T TIGR02868 222 ADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVR 301 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877666554444333333332333322222211 222234457889999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHH
Q 000481 1182 ISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS 1261 (1467)
Q Consensus 1182 ~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~ 1261 (1467)
.+.+|+.++.+.++|.+... ...+...+|..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||++
T Consensus 302 ~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 302 AAAERIEEVTGAKGPRPEGV-VPAAGALGLGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLM 379 (529)
T ss_pred HHHHHHHHHhcCCCCcCCCC-CCCCcccCCCCceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999998776533211 11111123456789999999999754 35999999999999999999999999999999
Q ss_pred HHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCC
Q 000481 1262 ALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPN 1340 (1467)
Q Consensus 1262 ~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~ 1340 (1467)
+|+|+|+|++|+|.+||+|++++ .+++|++|+||||||+||+|||||||...+ +.+|||+++|++.+++++++.++|+
T Consensus 380 lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~ 458 (529)
T TIGR02868 380 LLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPD 458 (529)
T ss_pred HHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcc
Confidence 99999999999999999999999 999999999999999999999999998643 5799999999999999999999999
Q ss_pred CcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCc
Q 000481 1341 KLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRV 1411 (1467)
Q Consensus 1341 gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl 1411 (1467)
||||+|||+|.+||||||||+|||||++++|+|||||||||+||++||+.|++.+++..+++|+|+||||+
T Consensus 459 GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 459 GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred cccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-71 Score=698.94 Aligned_cols=541 Identities=20% Similarity=0.252 Sum_probs=433.1
Q ss_pred HHHHHHHhhhhhhHHHHhhcccC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 000481 908 AQSGFVGLQAAATYWLAYAIQIP--KITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLF 985 (1467)
Q Consensus 908 ~~~~~~~~~~~~~~wl~~~~~~~--~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~f 985 (1467)
+.++...+.++.++.++..++.- ......++..++++.+...+..++...+......+....++.++++++++.|++|
T Consensus 27 ~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~ 106 (585)
T TIGR01192 27 ANITLAAITIAEPILFGRIIDAISSKSDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSW 106 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 33344445555555555444321 1111112222223333344444455555556666667777789999999999999
Q ss_pred cccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 986 FDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRI 1065 (1467)
Q Consensus 986 fd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl 1065 (1467)
|++.++|++++|+++|++.+...+...+..++..++.++..+++++..+|.+.++++.+++++.++.+.+.+..++..+.
T Consensus 107 ~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~ 186 (585)
T TIGR01192 107 HQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAA 186 (585)
T ss_pred hCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988777777777777777777778888999988877766667677777777766776666
Q ss_pred hccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Q 000481 1066 NGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL-FTAALFLVLIP 1144 (1467)
Q Consensus 1066 ~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~-~~~~~~~~~~~ 1144 (1467)
.....+...+++.|+++|+.+||+|+.++.+.+++.+..+...+..+.......+......++..+.. ++..+..+++.
T Consensus 187 ~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~ 266 (585)
T TIGR01192 187 VEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVI 266 (585)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888999999999999999999999999888887776555443332222222222222222211 12222334456
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCC-CCcceEEEEEEEE
Q 000481 1145 RGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSW-PFKGRIELRQLKI 1223 (1467)
Q Consensus 1145 ~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~w-p~~g~I~f~nvs~ 1223 (1467)
.|.++.|.+..++.|+..+..++..+...+.++.....+.+|+.++.+.+++.+.. ..+ ..+ +..+.|+|+||+|
T Consensus 267 ~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~---~~~-~~~~~~~~~i~~~~v~~ 342 (585)
T TIGR01192 267 KGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP---ADA-PELPNVKGAVEFRHITF 342 (585)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC---ccC-CCCCCCCCeEEEEEEEE
Confidence 78899999888888999999999999999999999999999999998765443211 111 112 2356899999999
Q ss_pred EeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCccc
Q 000481 1224 RYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303 (1467)
Q Consensus 1224 ~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF 1303 (1467)
+|+++ .++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++++||||.+|
T Consensus 343 ~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf 421 (585)
T TIGR01192 343 EFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLF 421 (585)
T ss_pred ECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccC
Confidence 99744 35899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCC
Q 000481 1304 RGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382 (1467)
Q Consensus 1304 ~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~ 1382 (1467)
++|+|+||.... +.+|+|++++++.+++++++.++|+|+||.++++|.+||||||||++|||||+++|+|||||||||+
T Consensus 422 ~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~ 501 (585)
T TIGR01192 422 NRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSA 501 (585)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 999999997542 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHHHH
Q 000481 1383 IDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYWS 1453 (1467)
Q Consensus 1383 lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~~~ 1453 (1467)
||.+|++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|++++|.|++|++.+.-
T Consensus 502 LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~ 572 (585)
T TIGR01192 502 LDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRSGL 572 (585)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHhCcc
Confidence 99999999999999888899999999999999999999999999999999999999999999999876543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-71 Score=700.99 Aligned_cols=510 Identities=19% Similarity=0.272 Sum_probs=421.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHH
Q 000481 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1467)
Q Consensus 938 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~ 1017 (1467)
+++++++.++..++.+++.++....+.+...+++.++++++++.|++||++.++|++++|+++|++.+.......+..++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~ 118 (569)
T PRK10789 39 IGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLV 118 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44454555556667777778888889999999999999999999999999999999999999999999876666666666
Q ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHH
Q 000481 1018 ASGTELLAIIGIM-TFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096 (1467)
Q Consensus 1018 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f 1096 (1467)
..++..+..++++ +..+|.+.++.+..+++..++.+.+.+..++..+......+.+.+++.|+++|+.+||+|+.++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 198 (569)
T PRK10789 119 DSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQ 198 (569)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHH
Confidence 6655555544444 467887766655555555555555544444444444455677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLT-LFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYC 1175 (1467)
Q Consensus 1097 ~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~-~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~ 1175 (1467)
.+++.+..+...+..........+.......+..+. ++...+..+++..|.++.|.+..+..|...+..++..+...+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~ 278 (569)
T PRK10789 199 SALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFN 278 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988877665554443333332222222222111 1112222344567889999988888899999999999999999
Q ss_pred HHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCc
Q 000481 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSG 1255 (1467)
Q Consensus 1176 ~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsG 1255 (1467)
.+.....+.+|+.++.+.+++.+.. ....+ +.+|.|+|+|++|+|+++.+++|+|+||+|+|||++||||+||||
T Consensus 279 ~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsG 353 (569)
T PRK10789 279 IVERGSAAYSRIRAMLAEAPVVKDG--SEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSG 353 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCC--CCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCC
Confidence 9999999999999999876543211 11111 235689999999999765567999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCC-CCCCHHHHHHHHHHcCCchH
Q 000481 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTT 1334 (1467)
Q Consensus 1256 KSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~ 1334 (1467)
||||+++|.|+++|++|+|.+||+|+++++.+++|++++++||||.+|+||||+||... .+++|++++++++.++++++
T Consensus 354 KSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~ 433 (569)
T PRK10789 354 KSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDD 433 (569)
T ss_pred HHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999754 35799999999999999999
Q ss_pred HhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhh
Q 000481 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTV 1414 (1467)
Q Consensus 1335 i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti 1414 (1467)
+.++|+|+||.++++|.+||||||||++||||++++|+|||||||||+||+++++.|.+.|++..+++|+|+||||++++
T Consensus 434 i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~ 513 (569)
T PRK10789 434 ILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSAL 513 (569)
T ss_pred HHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887899999999999999
Q ss_pred cccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHHH
Q 000481 1415 IDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYW 1452 (1467)
Q Consensus 1415 ~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~~ 1452 (1467)
..||+|++|++|+++|.|+|++|++++|.|++|+....
T Consensus 514 ~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 551 (569)
T PRK10789 514 TEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQ 551 (569)
T ss_pred HcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhh
Confidence 99999999999999999999999999999999987543
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-71 Score=642.99 Aligned_cols=499 Identities=24% Similarity=0.354 Sum_probs=391.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHH
Q 000481 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015 (1467)
Q Consensus 936 ~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~ 1015 (1467)
..+..|....+.+.+|..++.+++.....++-+....+.+.+.+...++||.+..+|.+.+....-...+...+.-.+..
T Consensus 75 ~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~ 154 (591)
T KOG0057|consen 75 ALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFN 154 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHH
Confidence 45677888889999999999999999999999999999999999999999999999988888877777666666555554
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHc
Q 000481 1016 VAASGTELLAIIGIMT-FVTWQVLVVAIFAMVAVRF----VQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAF 1090 (1467)
Q Consensus 1016 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf 1090 (1467)
++-.++.+......+. -..+.+.++.+.....|.. +.++-.+ .++....+.....+...|++.+-.+||+|
T Consensus 155 i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~----fR~~~N~Adn~as~~~~dsL~Nye~VKsf 230 (591)
T KOG0057|consen 155 IIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNR----FRKAMNNADNSASRRAYDSLINYEIVKSF 230 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHH----HHHHHHhhhhHHHHHHHHHHhhHHHHHHc
Confidence 4444444333332222 2334444443333333321 1111111 11222233344567788999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----hccCcccHHHHHHHHHHHHHHHH
Q 000481 1091 NMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAA-LFLVL----IPRGYVAPGLVGLSLSYAFTLTG 1165 (1467)
Q Consensus 1091 ~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~-~~~~~----~~~~~~~~g~~g~~l~~~~~l~~ 1165 (1467)
+.|++..++|...+...-+....... |+++ +++.+..+..+.. ..+++ +..+.++.|..-+..+...++..
T Consensus 231 NnE~~Ea~~y~~~l~~~~~~~~~~~~---sl~~-lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~ 306 (591)
T KOG0057|consen 231 NNEEYEASRYDGSLKTYERAGLKYSS---SLAF-LNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSL 306 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhHHh---HHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHh
Confidence 99999999999888766554433333 3332 2333333222221 11222 23446677777777888888999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcE
Q 000481 1166 TQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTR 1245 (1467)
Q Consensus 1166 ~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~Gek 1245 (1467)
+++.+...+.++-.++.-.+-.....+.... ..+. +++.-+..|.|+|+||+|.|.|+ ++||+|+||+|++|||
T Consensus 307 ~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~----i~~~-~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGek 380 (591)
T KOG0057|consen 307 PLNFLGSVYRELRQALTDMRTLFILLEVDED----IQEA-ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEK 380 (591)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhhhhh----hhhc-cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCE
Confidence 9999999998888877776665543221111 0111 11112345789999999999865 4599999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHH
Q 000481 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWK 1324 (1467)
Q Consensus 1246 VgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~ 1324 (1467)
|||||++||||||++++|+||+| .+|+|+|||+||++++++.+|+.||+||||..||++||-+||...+ ..+|||+.+
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e 459 (591)
T KOG0057|consen 381 VAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVE 459 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHH
Confidence 99999999999999999999999 9999999999999999999999999999999999999999996332 479999999
Q ss_pred HHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEE
Q 000481 1325 ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTV 1404 (1467)
Q Consensus 1325 aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~Tv 1404 (1467)
++|+++++|.+.++|+||+|.|||+|.-||||||||++||||+|++|+|+++|||||+||.+||+.|.++|+....++|+
T Consensus 460 ~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTv 539 (591)
T KOG0057|consen 460 ACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTV 539 (591)
T ss_pred HHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHH
Q 000481 1405 ITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449 (1467)
Q Consensus 1405 I~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~ 1449 (1467)
|+|+||++++++||+|+|||+|+++|+|+|+||+++.+.|++++.
T Consensus 540 I~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~ 584 (591)
T KOG0057|consen 540 IMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWT 584 (591)
T ss_pred EEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhc
Confidence 999999999999999999999999999999999997777777654
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-69 Score=699.90 Aligned_cols=544 Identities=22% Similarity=0.257 Sum_probs=435.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1467)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1467)
+++..++.+++.++...++.++..++.++.|++++.++|.+.... .....+.+++++++..++..++.....+...+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 126 LLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA-DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445567778888888899999999999999999999764221 2222233334444445555555555556677889
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1467)
Q Consensus 347 ~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~ 425 (1467)
.++...++..+|+|.++++...+++.++|+++++++ |++.+.++... +.......+..++++++++..-++.+++.++
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 283 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVA 283 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997 78888875432 2222222222334445555554555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000481 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GT 504 (1467)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~-~~ 504 (1467)
++++..++...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.++.++..++..+...+....... ..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (686)
T TIGR03797 284 LALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTV 363 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556667788888888999999999999999999999999999999888777666555544433332222222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Q 000481 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584 (1467)
Q Consensus 505 ~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~ 584 (1467)
+...+..+...++.++|.+++.++.+|.|.++++.+++..+..|+..++..+..+++++++++|+.++++.++..+...
T Consensus 364 ~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~- 442 (686)
T TIGR03797 364 FNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK- 442 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc-
Confidence 2222222333444555666666789999999999999999999999999999999999999999999997654322111
Q ss_pred cccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------
Q 000481 585 RISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1467)
Q Consensus 585 ~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------ 658 (1467)
.......+.|+++|++|+|+++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 443 -~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~ 520 (686)
T TIGR03797 443 -TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL 520 (686)
T ss_pred -CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcC
Confidence 1111223579999999999754 36799999999999999999999999999999999999999999999988
Q ss_pred -------eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 659 -------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 659 -------~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
.|+||||+|++|++||+|||.+|++.+++++.++++.|+++++++.+|+|++|.+||+|.+||||||||++||
T Consensus 521 ~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialA 600 (686)
T TIGR03797 521 DVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA 600 (686)
T ss_pred CHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 4999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCch
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTA 811 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~ 811 (1467)
||++++|+|+|||||||+||+++++++.+.+.+ . ++|+|+||||++.++.||+|++|++|+|++.|+|+|+++.++.
T Consensus 601 RAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~-~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~ 677 (686)
T TIGR03797 601 RALVRKPRILLFDEATSALDNRTQAIVSESLER-L--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGL 677 (686)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH-h--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 999999999999999999999999999876543 2 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 000481 812 FEQLVNA 818 (1467)
Q Consensus 812 ~~~~~~~ 818 (1467)
|.++++.
T Consensus 678 y~~l~~~ 684 (686)
T TIGR03797 678 FAQLARR 684 (686)
T ss_pred HHHHHHh
Confidence 9888753
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-70 Score=686.29 Aligned_cols=482 Identities=20% Similarity=0.255 Sum_probs=400.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHH
Q 000481 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFV 1016 (1467)
Q Consensus 937 ~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~ 1016 (1467)
+.+.++++.++..++.+++.++....+.+...+++.++++++++.|..||++.++|++++|+++|++.++..+...+..+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~ 125 (529)
T TIGR02857 46 ALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQL 125 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455566677778888999999999999999999999999999999999999999999999999999998888777777
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHH
Q 000481 1017 AASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRF 1096 (1467)
Q Consensus 1017 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f 1096 (1467)
+..++.++..+++++..+|.+.++++..+++..++...+.+..+...+......+...+++.|+++|+.+||+|+.++++
T Consensus 126 ~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~ 205 (529)
T TIGR02857 126 VLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQ 205 (529)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHH
Confidence 77777777777788888887765554433333333333333333333333344556788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1097 FQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYC 1175 (1467)
Q Consensus 1097 ~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~-~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~ 1175 (1467)
.+++.+..+...+..........+......++..+..+.. .+..+.+..|.++.|.+..++.|+..+..++..+...+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~ 285 (529)
T TIGR02857 206 AAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYH 285 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888777666555444444444444444443333222 222233347789999888888888889999999999999
Q ss_pred HHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCc
Q 000481 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSG 1255 (1467)
Q Consensus 1176 ~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsG 1255 (1467)
.+.....+.+|+.++.+.+++... . .+...+..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||
T Consensus 286 ~~~~~~~~~~ri~~ll~~~~~~~~---~--~~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsG 360 (529)
T TIGR02857 286 ARADGVAAAEALFAVLDAPRPLAG---K--APVTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAG 360 (529)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCC---C--cCCCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCC
Confidence 999999999999999975543221 1 11112234689999999999765557999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchH
Q 000481 1256 KTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTT 1334 (1467)
Q Consensus 1256 KSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~ 1334 (1467)
||||+++|.|+++|++|+|.+||+|+++++.+++|+++++|||||.+|+|||||||.... ..+|+++++|++.++++++
T Consensus 361 KSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~ 440 (529)
T TIGR02857 361 KSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEF 440 (529)
T ss_pred HHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHH
Confidence 999999999999999999999999999999999999999999999999999999997543 5789999999999999999
Q ss_pred HhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhh
Q 000481 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTV 1414 (1467)
Q Consensus 1335 i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti 1414 (1467)
++++|+||||.+||+|.+||||||||++||||++++|+|||||||||+||++|++.|++.+++..+++|+|+||||++++
T Consensus 441 i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 520 (529)
T TIGR02857 441 VAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALA 520 (529)
T ss_pred HHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred cccCEEEEE
Q 000481 1415 IDSDMVMVL 1423 (1467)
Q Consensus 1415 ~~~DrIlVl 1423 (1467)
..||+|+||
T Consensus 521 ~~~d~i~~l 529 (529)
T TIGR02857 521 ERADRIVVL 529 (529)
T ss_pred HhCCEEEeC
Confidence 999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-72 Score=627.11 Aligned_cols=489 Identities=20% Similarity=0.320 Sum_probs=403.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHhH
Q 000481 957 FFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMT-FVTW 1035 (1467)
Q Consensus 957 ~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~-~~~~ 1035 (1467)
.++...+..+-+.+--+.|.++.+..+.|.-+..+|-+..-...-..-++..+.+.+...+-.++.+....+++. ...|
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 344555666777777788889999999998877666544333333333444444445555555555544444444 4578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1036 QVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTN 1115 (1467)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~ 1115 (1467)
++..+.+..+++|.++.-....-.-..+|.-..+.+...+...+++-+-.|++.||.|+.+..+|...++...+......
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 88887777777766544333333334455555566677788899999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCC
Q 000481 1116 GVMEWLILRVEALQNLTLFTAAL-FLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIP 1194 (1467)
Q Consensus 1116 ~~~~wl~~rl~~~~~~~~~~~~~-~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~ 1194 (1467)
....|+.+.-..+.......... ...-+..+.++.|.....-.+..+++.+++++...+.++.+.....|++.+..+.+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~ 243 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence 77777776544433322211111 11234567899999999999999999999999999999999999999999998876
Q ss_pred CCCCCCcCCCCCCCCCC-CcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcce
Q 000481 1195 PEPPAIVEDKRPPSSWP-FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273 (1467)
Q Consensus 1195 ~e~~~~~~~~~~~~~wp-~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~ 1273 (1467)
.|-. +....|+-|| ..|.|.|+||+|.|.|.. ++|+|+||++++|+++||||++|+||||+..+|+|||++++|+
T Consensus 244 ~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 244 AEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred hhhc---cCCCCccccccccceEEEEEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 6542 2223445575 458899999999998776 5999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCC
Q 000481 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGEN 1352 (1467)
Q Consensus 1274 I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~n 1352 (1467)
|.|||.||.++..+.||+.||+||||.+||+.|+..|+...+ ..+++|+++|++.++++++++++|+||||.|||+|-.
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk 399 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee
Confidence 999999999999999999999999999999999999996433 4799999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEec
Q 000481 1353 WSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1353 LS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g 1432 (1467)
||||||||+++||++|++|+||+||||||+||..||+.||.+|++.++++|.++|||||+||.|+|.|+||++|+|+|.|
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg 479 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERG 479 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhccCChhHHHHH
Q 000481 1433 EPSKLMETNSSFSKLVA 1449 (1467)
Q Consensus 1433 ~p~~Ll~~~~~f~~lv~ 1449 (1467)
+|+||++++|.|++|+.
T Consensus 480 ~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 480 THEELLAAGGLYAEMWR 496 (497)
T ss_pred cHHHHHHcCChHHHHhc
Confidence 99999999999999864
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-69 Score=700.00 Aligned_cols=542 Identities=19% Similarity=0.237 Sum_probs=437.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1467)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1467)
+..++.+++.++...++.++..++.++.|++++.++|.+.... .....+.+++++++..++..++.....+...+++.+
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (710)
T TIGR03796 146 WRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQG-RQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIK 224 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777888888899999999999999998654322 111222333344444555556555556677888999
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1467)
Q Consensus 349 ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~ 427 (1467)
+...++..+|+|.++++...+++.++|+++++++.| +.+.++.. .+.......+.+++.+++++..-++.+++.++.+
T Consensus 225 ~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 303 (710)
T TIGR03796 225 LAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFA 303 (710)
T ss_pred HHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988 67776543 3344444455555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000481 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVI 506 (1467)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~-~~~~ 506 (1467)
++...+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..+++.+...+....... ..+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (710)
T TIGR03796 304 AINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLP 383 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556667778888888888999999999999999999999999999999998888777766654443322222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc---
Q 000481 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV--- 583 (1467)
Q Consensus 507 ~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~--- 583 (1467)
.....+...++.++|.+++.++.+|.|.++++.+++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 384 ~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~ 463 (710)
T TIGR03796 384 TLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEA 463 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc
Confidence 22222333344555666666689999999999999999999999999999999999999999999997654322111
Q ss_pred -c-cccc-cCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--
Q 000481 584 -R-RISL-QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658 (1467)
Q Consensus 584 -~-~~~~-~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-- 658 (1467)
. .... ....+.|+++|++|+|+++ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 464 ~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 542 (710)
T TIGR03796 464 PAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIP 542 (710)
T ss_pred cccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence 0 0111 1224579999999999854 36799999999999999999999999999999999999999999999987
Q ss_pred -----------eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 -----------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 -----------~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.|+||||+|++|++||||||.++.+ .+++++.++++.++++++++.+|+|++|.+||+|.+|||||||
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQ 622 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQ 622 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHH
Confidence 4999999999999999999999864 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
||+||||++++|+|+|||||||+||+++++++++.+.. .++|+|+||||++.+..||+|++|++|+|++.|+|+|++
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999999999999999999999876643 589999999999999999999999999999999999999
Q ss_pred hcCchHHHHH
Q 000481 807 LAGTAFEQLV 816 (1467)
Q Consensus 807 ~~~~~~~~~~ 816 (1467)
+.++.|.+++
T Consensus 700 ~~~~~y~~l~ 709 (710)
T TIGR03796 700 AVGGAYARLI 709 (710)
T ss_pred HcCCcHHHHh
Confidence 9988888765
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-69 Score=695.72 Aligned_cols=539 Identities=21% Similarity=0.240 Sum_probs=419.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1467)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~ 351 (1467)
.+.+++.++...++.++..++.++.|+++..++|.+...... ..-...+..+++..++..++.....+...+.+.++..
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 234 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP-PALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINL 234 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677778888899999999999999999977532211 1111111122222222333332223334456666667
Q ss_pred HHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLIC 430 (1467)
Q Consensus 352 ~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~ 430 (1467)
.++..+|++.++.+...+++.++|+++|++++|++.+.+... .+..++...+.+++++++++..-+..+++.++.+++.
T Consensus 235 ~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~ 314 (711)
T TIGR00958 235 RIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLV 314 (711)
T ss_pred HHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 777888999999999999999999999999999999987543 3555566666666666666655444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000481 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVI-YWM 509 (1467)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~-~~~ 509 (1467)
..+...+.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.++.++..++..+..++........... ..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (711)
T TIGR00958 315 FLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVL 394 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888888888888999999999999999999999998866655554443332222221111111111 111
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccc
Q 000481 510 SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ 589 (1467)
Q Consensus 510 ~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~ 589 (1467)
..+...++.+++.+++.++.+|+|.+++++.+...+..|+..++..+..+.+++++.+|+.++++.++..++... ..+.
T Consensus 395 ~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~-~~~~ 473 (711)
T TIGR00958 395 GMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT-LAPL 473 (711)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC-CCCC
Confidence 112222334455555656899999999999999999999999999999999999999999999976543321111 1111
Q ss_pred CCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------
Q 000481 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1467)
Q Consensus 590 ~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------- 658 (1467)
+..+.|+++|++|+|++++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 474 ~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 474 NLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred CCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 234579999999999865456899999999999999999999999999999999999999999999988
Q ss_pred --eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 659 --SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 659 --~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
+|+||||+|++|++||||||.+|.+ .+++++.++++.++++++++.+|+|++|.+||+|.+||||||||++||||++
T Consensus 554 r~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 554 HRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred HhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 5999999999999999999999965 6788999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHH
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~ 815 (1467)
++|+|+|||||||+||+++++.+.+ ....+++|+|+||||++.+..||+|++|++|+|++.|+|+|++++++.|+++
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 9999999999999999999999876 2234789999999999999999999999999999999999999988888764
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-68 Score=690.06 Aligned_cols=536 Identities=21% Similarity=0.278 Sum_probs=430.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1467)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1467)
++...+.+++.+....++.++..++.++.|++++.++|.+.... .....+.+++++++..++..++.....+...+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (694)
T TIGR03375 138 FWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ-AFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGK 216 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888888889999999999999999999764221 22222233333444444555555555566778889
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1467)
Q Consensus 348 ~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~ 426 (1467)
++...++..+|+|.++++... .+.++|++++++ +|++.+.++... +.......+.+++.+++++..-++.+++.+++
T Consensus 217 ~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 294 (694)
T TIGR03375 217 KADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVA 294 (694)
T ss_pred HHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999887 678999999999 799999886542 22223333334444445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000481 427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYG-TV 505 (1467)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~-~~ 505 (1467)
+++..++...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..++..+...+........ .+
T Consensus 295 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (694)
T TIGR03375 295 IPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNF 374 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666778888889999999999999999999999999999999999998888877776655444433322222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q 000481 506 IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585 (1467)
Q Consensus 506 ~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~ 585 (1467)
...+..+...+++++|.+++.++.+|+|.+++++.++..+..|+..++..+..+.+++++++|+.++++.++..+.....
T Consensus 375 ~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~ 454 (694)
T TIGR03375 375 AQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRF 454 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 22222222333445565666668999999999999999999999999999999999999999999999775432211111
Q ss_pred ccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------
Q 000481 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1467)
Q Consensus 586 ~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------- 658 (1467)
...+...+.|+++|++|+|+++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 455 ~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~ 533 (694)
T TIGR03375 455 LHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQID 533 (694)
T ss_pred CCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC
Confidence 1111234579999999999743 45799999999999999999999999999999999999999999999987
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
.|+||||+|++|++||+|||.++++ .+++++.++++.++++++++.+|+|++|.+||+|.+||||||||++||
T Consensus 534 ~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalA 613 (694)
T TIGR03375 534 PADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA 613 (694)
T ss_pred HHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 5999999999999999999999987 789999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||++++|+++|||||||+||+++++.+.+. +....+++|+|+||||++.++.||+|++|++|++++.|+|+|+++.
T Consensus 614 Rall~~p~iliLDE~Ts~LD~~te~~i~~~-l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 614 RALLRDPPILLLDEPTSAMDNRSEERFKDR-LKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999765 4555678999999999999999999999999999999999999754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-67 Score=688.18 Aligned_cols=542 Identities=24% Similarity=0.277 Sum_probs=426.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1467)
Q Consensus 270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 349 (1467)
...+.+++.++...++.++..++.++.|++++.++|.+.... .....+.+++++++..++..++.....+...+.+.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (708)
T TIGR01193 149 PLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRL 227 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777788888899999999999999998654322 2222222333333444455555555556677888899
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1467)
Q Consensus 350 r~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1467)
...++..+|+|.++++...+++.++|+++++++ |++.+.++... ........+.+++.+++++..-++.+++.+++++
T Consensus 228 ~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 306 (708)
T TIGR01193 228 SIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIP 306 (708)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 89988875432 2222223333334444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000481 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-YGTVIY 507 (1467)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~-~~~~~~ 507 (1467)
+...+...+.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..++..+...+...... ...+..
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (708)
T TIGR01193 307 VYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677888888899999999999999999999999999999998877776665544333222211111 111111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q 000481 508 WMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1467)
Q Consensus 508 ~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~ 587 (1467)
....+...+++++|.+++.++.+|+|.++++.+++..+..|+..+...+..+.+++++++|+.++++.++..++......
T Consensus 387 ~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~ 466 (708)
T TIGR01193 387 VTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTE 466 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccC
Confidence 12222233344556666667899999999999999999999999999999999999999999999976543221111011
Q ss_pred ccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------
Q 000481 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1467)
Q Consensus 588 ~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------- 658 (1467)
.....+.|+++|++|+|++ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 467 ~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 467 LNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRH 544 (708)
T ss_pred CCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHH
Confidence 1223457999999999964 35799999999999999999999999999999999999999999999988
Q ss_pred ----eEEEEccCCcCCCCCHHHHHhcCC--CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 659 ----SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 659 ----~i~yv~Q~~~l~~~ti~eNi~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
.|+||||+|++|++||+|||.+|. ..+++++.++++.++++++++.+|+|++|.|||+|.+||||||||++|||
T Consensus 545 ~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALAR 624 (708)
T ss_pred HHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHH
Confidence 499999999999999999999983 47889999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchH
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~ 812 (1467)
|++++|+|+|||||||+||+++++++.+.+.. .+++|+|+||||++.+..||+|++|++|++++.|+|+|+++.++.|
T Consensus 625 all~~p~iliLDE~Ts~LD~~te~~i~~~L~~--~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y 702 (708)
T TIGR01193 625 ALLTDSKVLILDESTSNLDTITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFY 702 (708)
T ss_pred HHhhCCCEEEEeCccccCCHHHHHHHHHHHHH--hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcH
Confidence 99999999999999999999999999876654 3689999999999999999999999999999999999999988888
Q ss_pred HHHHH
Q 000481 813 EQLVN 817 (1467)
Q Consensus 813 ~~~~~ 817 (1467)
.++++
T Consensus 703 ~~l~~ 707 (708)
T TIGR01193 703 ASLIH 707 (708)
T ss_pred HHHhh
Confidence 88753
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-67 Score=669.87 Aligned_cols=545 Identities=17% Similarity=0.218 Sum_probs=427.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1467)
Q Consensus 270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 349 (1467)
.+++.+++.++...++.++..++..+.|++++.+++....... ......++..+++..++..++.....+...+++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 96 (582)
T PRK11176 18 PTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD-RSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKV 96 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666677777777778889999988886543221 111111222222233344444444445566788888
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1467)
Q Consensus 350 r~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1467)
...++..+|+|.++++...+++.++|++++++++|++.+.+... .+..++..++.+++.+++++.+-++.+++.+++++
T Consensus 97 ~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~ 176 (582)
T PRK11176 97 VMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAP 176 (582)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999987543 34455566666666666666555554444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000481 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-YGTVIY 507 (1467)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~-~~~~~~ 507 (1467)
+...+...+.+.+++..++.++..++..+...|.++|+++||.+++|+.+.++.++.-++-.+...+...... ......
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T PRK11176 177 IVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQ 256 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677788888888889999999999999999999999999987777666555443333222222211 111222
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q 000481 508 WMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1467)
Q Consensus 508 ~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~ 587 (1467)
.+..+...++.+++.+.+.++.+++|.+.++++++..+..|+..+...+..+.+++.+++|+.++++.++.++... ..
T Consensus 257 ~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~--~~ 334 (582)
T PRK11176 257 LIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK--RV 334 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC--cC
Confidence 2222333333444445555589999999999999999999999999999999999999999999987654322111 11
Q ss_pred ccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------
Q 000481 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1467)
Q Consensus 588 ~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------- 658 (1467)
..+..+.|+++|++|+|+++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 335 ~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 413 (582)
T PRK11176 335 IERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLA 413 (582)
T ss_pred CCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHH
Confidence 12223469999999999754 36799999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEccCCcCCCCCHHHHHhcCCC--CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 659 ----SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 659 ----~i~yv~Q~~~l~~~ti~eNi~~g~~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
.|+||||+|.+|++||+|||.+|++ +++++++++++.++++++++.+|+|++|.+||+|.+||||||||++|||
T Consensus 414 ~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 414 SLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred HHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 4899999999999999999999863 7899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchH
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~ 812 (1467)
|++++|+|+||||||||||+++++.+++.+ ....+++|+|+||||++.++.||+|++|++|+|++.|+|+++++.++.|
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l-~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y 572 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVY 572 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHH-HHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChH
Confidence 999999999999999999999999987655 4445689999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 000481 813 EQLVNAH 819 (1467)
Q Consensus 813 ~~~~~~~ 819 (1467)
++++..+
T Consensus 573 ~~l~~~~ 579 (582)
T PRK11176 573 AQLHKMQ 579 (582)
T ss_pred HHHHHHH
Confidence 9987643
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-68 Score=724.30 Aligned_cols=546 Identities=17% Similarity=0.228 Sum_probs=430.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhcccC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000481 902 LCLGVLAQSGFVGLQAAATYWLAYAIQIP--KITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIF 979 (1467)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il 979 (1467)
+++.+++.++..++.++.++.++..++.- ......+...+++++++..++.+++.++....+.+..++++.+++++++
T Consensus 62 ~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll 141 (1466)
T PTZ00265 62 LGVSFVCATISGGTLPFFVSVFGVIMKNMNLGENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVF 141 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555544421 1122234455666677778889999999999999999999999999999
Q ss_pred cccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 980 KAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATA 1059 (1467)
Q Consensus 980 ~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 1059 (1467)
+.|++|||..+.|++.+|++.|++.+...+...+..++..++.+++.++++++.+|.+.++++.++++++++...+.+..
T Consensus 142 ~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~ 221 (1466)
T PTZ00265 142 YQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKV 221 (1466)
T ss_pred CCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988776665555555555555555
Q ss_pred HHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000481 1060 RELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAA-L 1138 (1467)
Q Consensus 1060 r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~-~ 1138 (1467)
+...+......+...+.+.|+++|++|||+|+.|+++.++|.+..+...+..........+......++..+....+. +
T Consensus 222 ~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (1466)
T PTZ00265 222 KINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWY 301 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555556788999999999999999999999999998877766655444333222222122222111111111 1
Q ss_pred HHHHhccC--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCC
Q 000481 1139 FLVLIPRG--------YVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSW 1210 (1467)
Q Consensus 1139 ~~~~~~~~--------~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~w 1210 (1467)
...++..+ .+++|.+...+.+.+.....+..+...+..+.....|.+|+.+.++.+++.+.. .+ ....
T Consensus 302 G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~---~~~~ 377 (1466)
T PTZ00265 302 GTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENN-DD---GKKL 377 (1466)
T ss_pred HHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CC---CccC
Confidence 11222222 345554443333333333344455667788889999999999999876653211 11 1112
Q ss_pred CCcceEEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEE-CCeeCCCCCHHH
Q 000481 1211 PFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI-DGVDICSMGLKD 1288 (1467)
Q Consensus 1211 p~~g~I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~I-DG~dI~~i~l~~ 1288 (1467)
|..+.|+|+||+|+|+.. ..++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++ ||.|+++++.++
T Consensus 378 ~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~ 457 (1466)
T PTZ00265 378 KDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKW 457 (1466)
T ss_pred CCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHH
Confidence 334589999999999643 236999999999999999999999999999999999999999999999 579999999999
Q ss_pred HhhccEEeccCCcccccchHHhcCCC------------------------------------------------------
Q 000481 1289 LRVKLSIIPQEPTLFRGSVRTNLDPL------------------------------------------------------ 1314 (1467)
Q Consensus 1289 LR~~i~iIpQdp~LF~gTIR~NLdp~------------------------------------------------------ 1314 (1467)
+|++|++|||||.||++||++||...
T Consensus 458 lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 537 (1466)
T PTZ00265 458 WRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM 537 (1466)
T ss_pred HHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhc
Confidence 99999999999999999999999631
Q ss_pred ----CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHH
Q 000481 1315 ----GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAI 1390 (1467)
Q Consensus 1315 ----~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~ 1390 (1467)
...+|+++++|++.+++++++.++|+|+||.++++|.+||||||||++||||++++|+|||||||||+||+++++.
T Consensus 538 ~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~ 617 (1466)
T PTZ00265 538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617 (1466)
T ss_pred ccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 1257889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc--CCcEEEEEccCchhhcccCEEEEEeCC------------------------------------------
Q 000481 1391 LQRIIRQEF--SNCTVITVAHRVPTVIDSDMVMVLSYG------------------------------------------ 1426 (1467)
Q Consensus 1391 Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVl~~G------------------------------------------ 1426 (1467)
|++.|++.. +++|+|+||||++++..||+|+||++|
T Consensus 618 i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1466)
T PTZ00265 618 VQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKI 697 (1466)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccccccccccccccccc
Confidence 999999875 489999999999999999999999986
Q ss_pred -----EEEEecChhHHhc-cCChhHHHHHHH
Q 000481 1427 -----KLLEYDEPSKLME-TNSSFSKLVAEY 1451 (1467)
Q Consensus 1427 -----~ivE~g~p~~Ll~-~~~~f~~lv~~~ 1451 (1467)
+|+|+|+|+||++ ++|.|+.|++.+
T Consensus 698 ~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 698 NNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred ccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 5999999999998 799999999654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-69 Score=644.39 Aligned_cols=462 Identities=25% Similarity=0.422 Sum_probs=357.3
Q ss_pred cEEEEeEEEEeCCCCC-CCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCC----CcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI----SGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~----~G~i~~~g---------- 658 (1467)
-++++|.+..|..... .++++||||++.+||++||||.|||||||+.++|+|..++. +|+|.++|
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999875532 25999999999999999999999999999999999999987 79998876
Q ss_pred -------eEEEEccCCc-CCC--CCHHHHHh----cCCCC----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCcc
Q 000481 659 -------SIAYVSQTSW-IQS--GSIRDNIL----YGKPM----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1467)
Q Consensus 659 -------~i~yv~Q~~~-l~~--~ti~eNi~----~g~~~----~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~L 720 (1467)
.|||++|+|+ .+| .||.+-|. ..... ..++..+.++..++.+.... ......|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 4999999986 344 36665554 22222 12334445555555443332 3456799
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-CCEEEEEeCCeEeE
Q 000481 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1467)
Q Consensus 721 SGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1467)
||||||||.||+|+..+|+++|+||||+|||+.++++|.+.+.... ..|.++|+|||++..+.+ ||+|+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999987555443 358899999999999876 89999999999999
Q ss_pred ecChHHHHhcCch-HHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHH
Q 000481 799 SGNYQELLLAGTA-FEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDE 877 (1467)
Q Consensus 799 ~G~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 877 (1467)
.|+.++++.+... |.+-.
T Consensus 236 ~G~~~~i~~~p~hpYT~~L------------------------------------------------------------- 254 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGL------------------------------------------------------------- 254 (539)
T ss_pred ecCHHHHHhccCCcccHHH-------------------------------------------------------------
Confidence 9999998754210 00000
Q ss_pred HhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 000481 878 EMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSF 957 (1467)
Q Consensus 878 ~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~ 957 (1467)
+. ..|...
T Consensus 255 ---------------l~---------------------------------a~p~~~------------------------ 262 (539)
T COG1123 255 ---------------LA---------------------------------AVPRLG------------------------ 262 (539)
T ss_pred ---------------Hh---------------------------------hCCCcc------------------------
Confidence 00 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000481 958 FAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQV 1037 (1467)
Q Consensus 958 ~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 1037 (1467)
T Consensus 263 -------------------------------------------------------------------------------- 262 (539)
T COG1123 263 -------------------------------------------------------------------------------- 262 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1038 LVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGV 1117 (1467)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~ 1117 (1467)
..
T Consensus 263 -----------------------------~~------------------------------------------------- 264 (539)
T COG1123 263 -----------------------------DE------------------------------------------------- 264 (539)
T ss_pred -----------------------------cc-------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCC
Q 000481 1118 MEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEP 1197 (1467)
Q Consensus 1118 ~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~ 1197 (1467)
. + ...+.+.
T Consensus 265 ---------------------------~----------------------------------------~----~~~~~~~ 273 (539)
T COG1123 265 ---------------------------K----------------------------------------I----IRLPRRG 273 (539)
T ss_pred ---------------------------c----------------------------------------c----ccccccc
Confidence 0 0 0000000
Q ss_pred CCCcCCCCCCCCCCCcceEEEEEEEEEeCC---------CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC
Q 000481 1198 PAIVEDKRPPSSWPFKGRIELRQLKIRYRP---------NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1467)
Q Consensus 1198 ~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~---------~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~ 1268 (1467)
+ . +...-++++|++.+|.. +...+++||||++++||.+||||.||||||||.++|+|+.+
T Consensus 274 ~--------~---~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~ 342 (539)
T COG1123 274 P--------L---RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP 342 (539)
T ss_pred c--------c---ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 0 0 01225889999999963 12468999999999999999999999999999999999999
Q ss_pred CCcceEEECCee--CCCCCHHHHhhccEEeccCCccc---ccchHHhcC-CCCCC-------CHHHHHHHHHHcCCch-H
Q 000481 1269 PAGGSILIDGVD--ICSMGLKDLRVKLSIIPQEPTLF---RGSVRTNLD-PLGLY-------SDDEIWKALEKCQLKT-T 1334 (1467)
Q Consensus 1269 ~~~G~I~IDG~d--I~~i~l~~LR~~i~iIpQdp~LF---~gTIR~NLd-p~~~~-------sd~ei~~aL~~~~l~~-~ 1334 (1467)
|++|+|.+||.| .+.-....+|+++-+|.|||+-. ..||+++|. |...+ .++.+-+.|++++|.+ +
T Consensus 343 P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~ 422 (539)
T COG1123 343 PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF 422 (539)
T ss_pred CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHH
Confidence 999999999977 33333566889999999999733 459999983 43311 1234777799999885 4
Q ss_pred HhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCch
Q 000481 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVP 1412 (1467)
Q Consensus 1335 i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ 1412 (1467)
....|. .||||||||+||||||..+|++||+|||||+||+-+.+.|-+.|++.- -|.|.|+|+|++.
T Consensus 423 l~ryP~-----------elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~ 491 (539)
T COG1123 423 LDRYPH-----------ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA 491 (539)
T ss_pred HhcCch-----------hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 444443 589999999999999999999999999999999999999999887643 3789999999999
Q ss_pred hhcc-cCEEEEEeCCEEEEecChhHHhc-cCChhHHHH
Q 000481 1413 TVID-SDMVMVLSYGKLLEYDEPSKLME-TNSSFSKLV 1448 (1467)
Q Consensus 1413 ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f~~lv 1448 (1467)
.+.. ||||+||++|+|+|.|+.+++.+ ++..|.+..
T Consensus 492 vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 492 VVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred HHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHH
Confidence 9987 99999999999999998888888 566665443
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-67 Score=664.95 Aligned_cols=491 Identities=18% Similarity=0.214 Sum_probs=398.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhH-HHHH
Q 000481 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPF-SIVF 1015 (1467)
Q Consensus 937 ~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~-~l~~ 1015 (1467)
++.+++++.++..++.+++.++....+.+....++.++++++++.|+.. .|...+++++|++.+...+.. .+..
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~ 122 (544)
T TIGR01842 48 LTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFA 122 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 3444555556667788888899999999999999999999999999843 366789999999999887665 3444
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHH
Q 000481 1016 VAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDR 1095 (1467)
Q Consensus 1016 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~ 1095 (1467)
++..++.++. +++++..+|++.++++..+++...+..+..+..+...+...+..+...+++.|+++|+.+||+|+.++.
T Consensus 123 ~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~ 201 (544)
T TIGR01842 123 FFDAPWMPIY-LLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGN 201 (544)
T ss_pred HHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHH
Confidence 4444444433 356677788776554433333333333333333333344445566788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1096 FFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLT-LFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWY 1174 (1467)
Q Consensus 1096 f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~-~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~ 1174 (1467)
+.+++.+..++..+..........+......++..+. +++..+..+++..|.+++|.+..++.+...+..++..+...+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~ 281 (544)
T TIGR01842 202 LTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGW 281 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877765554433322222222222222221 112223334456788999999889999999999999999999
Q ss_pred HHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCC
Q 000481 1175 CYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGS 1254 (1467)
Q Consensus 1175 ~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGs 1254 (1467)
.++.....+.+|+.++.+.+++.+. ....+ +.++.|+++||+|+|+++.+++|+|+||+|+|||++||||+|||
T Consensus 282 ~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGs 355 (544)
T TIGR01842 282 KQFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGS 355 (544)
T ss_pred HHHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCC
Confidence 9999999999999999987655321 11111 23468999999999976556799999999999999999999999
Q ss_pred cHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCch
Q 000481 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKT 1333 (1467)
Q Consensus 1255 GKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~ 1333 (1467)
|||||+++|.|+++|++|+|.+||+|+.+++.+.+|++++++||||.+|+||+|+|+..++ .++|++++++++.+++++
T Consensus 356 GKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~ 435 (544)
T TIGR01842 356 GKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHE 435 (544)
T ss_pred CHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHH
Confidence 9999999999999999999999999999999999999999999999999999999997554 379999999999999999
Q ss_pred HHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCch
Q 000481 1334 TISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVP 1412 (1467)
Q Consensus 1334 ~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ 1412 (1467)
+++++|+|+||.++|+|.+||||||||++||||++++|+|||||||||+||.+|++.+.+.+++.. +++|+|+||||++
T Consensus 436 ~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~ 515 (544)
T TIGR01842 436 LILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS 515 (544)
T ss_pred HHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999875 6899999999999
Q ss_pred hhcccCEEEEEeCCEEEEecChhHHhc
Q 000481 1413 TVIDSDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1413 ti~~~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++..||+|++|++|+++|.|+|++|++
T Consensus 516 ~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 516 LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999975
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=660.40 Aligned_cols=536 Identities=24% Similarity=0.336 Sum_probs=419.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1467)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~ 354 (1467)
++ .+..+.++.++..++....|.++..+++..... ......+...+++..++..+......+...+.+.++...++
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD---LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 777788888888999999999999998876511 11111222222222233344444444555566688888888
Q ss_pred HHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWS-LALQLFLAIGVLFGVVGLGALPGLVLFLICGLL 433 (1467)
Q Consensus 355 ~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~-~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~ 433 (1467)
..+|+|.++++...++++++|++++++++|++.+............ .++.++..+++++..-...+++.+++++++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 168 (567)
T COG1132 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALV 168 (567)
T ss_pred HHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999886654322222 233333333333332222233333333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 000481 434 NVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKW-LSEAQLRKAYGTVIYWMSPT 512 (1467)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~-l~~~~~~~~~~~~~~~~~~~ 512 (1467)
...+.++.++..++..+..++..+.+.|.++|+++||.|+.|+...++.++..+...+. .+.................+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (567)
T COG1132 169 LSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSL 248 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566788888888889999999999999999999999986655544443333222 12222222222333344444
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCC
Q 000481 513 IISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSD 592 (1467)
Q Consensus 513 ~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~ 592 (1467)
....+.+.+...+..+.+++|.+.+++.++..+..|+..+...+..+.++..|.+|+.++++.++...+.... .....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~~ 326 (567)
T COG1132 249 GTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LKDTI 326 (567)
T ss_pred HHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CCCCC
Confidence 4555556666666667899999999999999999999999999999999999999999999875432211111 12334
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 659 (1467)
+.|+|+|++|+|++ ++++|+|+||++++||.+|||||+|||||||+++|+|+++|++|+|.++| +
T Consensus 327 ~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~ 404 (567)
T COG1132 327 GSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR 404 (567)
T ss_pred CeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHh
Confidence 67999999999975 35799999999999999999999999999999999999999999999987 4
Q ss_pred EEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCC
Q 000481 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1467)
Q Consensus 660 i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~ 738 (1467)
|+||||+|++|++||+|||.+|++ .+++++.++++.++++++++.+|+|++|.|||+|.+||||||||++||||+++||
T Consensus 405 I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 405 IGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred ccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988 6899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHHHHH
Q 000481 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1467)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~ 818 (1467)
+|++||||||+||+++++.+.+.+. ...++||+|+|+||++.+.+||+|+||++|+|++.|+|+||++.++.|.++++.
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~-~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~ 563 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQA 563 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHH-HHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999876554 445789999999999999999999999999999999999999999999999876
Q ss_pred h
Q 000481 819 H 819 (1467)
Q Consensus 819 ~ 819 (1467)
+
T Consensus 564 ~ 564 (567)
T COG1132 564 Q 564 (567)
T ss_pred h
Confidence 4
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-66 Score=660.42 Aligned_cols=544 Identities=19% Similarity=0.260 Sum_probs=437.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1467)
Q Consensus 270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 349 (1467)
.+.+.+++.+++..++.++..++....|+++..+++...... .....+.+++++++..++..+......+...+.+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (571)
T TIGR02203 7 SYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR-DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKV 85 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888888899999999999999998887543221 1111122222333344444555444556677888888
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1467)
Q Consensus 350 r~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1467)
...++..+|+|.++.+...+++.+.|++++++++|++++.++.. .+..++...+.+++++++++.+-++.+++.+++++
T Consensus 86 ~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~ 165 (571)
T TIGR02203 86 VRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLP 165 (571)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999987653 34555556666666666666655555555445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000481 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-YGTVIY 507 (1467)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~-~~~~~~ 507 (1467)
+...+...+.++.++..++..+..+++.+.++|.++|+++||.++.|+.+.++.++..++..+...+...... ...+..
T Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (571)
T TIGR02203 166 VLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQ 245 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666778888888999999999999999999999999999999998877777666555443332222222 122222
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q 000481 508 WMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRIS 587 (1467)
Q Consensus 508 ~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~ 587 (1467)
....+...++.++|.+++.++.+|+|.+++++.++..+..|+..+...+..+.+++++.+|+.++++.++..+... ..
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~ 323 (571)
T TIGR02203 246 LIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT--RA 323 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CC
Confidence 2222333344455555566689999999999999999999999999999999999999999999997654332111 11
Q ss_pred ccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------
Q 000481 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1467)
Q Consensus 588 ~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------- 658 (1467)
.....+.|+++|++|+|+++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 324 ~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 324 IERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLA 402 (571)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHH
Confidence 11234579999999999754 35799999999999999999999999999999999999999999999988
Q ss_pred ----eEEEEccCCcCCCCCHHHHHhcCC--CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 659 ----SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 659 ----~i~yv~Q~~~l~~~ti~eNi~~g~--~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
.|+||||+|++|++|+||||.+++ +.++++++++++.|++++++..+|+|.+|.+|++|.+||||||||++|||
T Consensus 403 ~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 403 SLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIAR 482 (571)
T ss_pred HHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 499999999999999999999996 48899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchH
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~ 812 (1467)
|++++|+|++||||||+||+++++++.+.+ ....+++|+|+||||.+.+..||+|++|++|++++.|+|+++++.++.|
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L-~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~ 561 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLY 561 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHH-HHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHH
Confidence 999999999999999999999999997655 4445789999999999999999999999999999999999999888888
Q ss_pred HHHHHH
Q 000481 813 EQLVNA 818 (1467)
Q Consensus 813 ~~~~~~ 818 (1467)
.++.+.
T Consensus 562 ~~~~~~ 567 (571)
T TIGR02203 562 AQLHNM 567 (571)
T ss_pred HHHHHH
Confidence 887653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-66 Score=656.19 Aligned_cols=542 Identities=21% Similarity=0.243 Sum_probs=418.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSN-RGEE--NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1467)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~-~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1467)
+.+.+++.++++.++.++..++..+.|.+++.+++... .+.. .....+..++++++..++..+......+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888889999999999999999998542 2210 00111111222333344455555555566778889
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1467)
Q Consensus 348 ~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~ 426 (1467)
++...++..+|+|.++++...+++.++|++++++++|++.++++... +..+....+.+++++++++.+-...+++.+++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986543 34444455555555555544333333322222
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000481 427 FLICG-LLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-YGT 504 (1467)
Q Consensus 427 ~~~~~-~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~-~~~ 504 (1467)
+++.. .+...+.++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.++.++..++..+...+...... ...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (574)
T PRK11160 170 LLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQA 249 (574)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 2234456667777888888899999999999999999999999988877766655543332222221111 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Q 000481 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRS-MGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1467)
Q Consensus 505 ~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~-l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 583 (1467)
+...+......++.+++..++ ++.++.+.+++++.+... ...|+..++..+..+.++.+|.+|+.++++.++..++..
T Consensus 250 ~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~ 328 (574)
T PRK11160 250 LMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPT 328 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 222233333334445555554 478899998888777544 356888899999999999999999999997654321111
Q ss_pred ccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----
Q 000481 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----- 658 (1467)
Q Consensus 584 ~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----- 658 (1467)
. .......+.|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 329 ~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~ 406 (574)
T PRK11160 329 T-STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD 406 (574)
T ss_pred c-cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 1 1111233579999999999753 35799999999999999999999999999999999999999999999987
Q ss_pred --------eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 659 --------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 659 --------~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
.|+||||+|++|++||+|||.+|.+ .+++++.++++.++++++++. |+|++|.+||+|.+||||||||++
T Consensus 407 ~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 407 YSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred CCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHH
Confidence 3999999999999999999999975 688999999999999999999 999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcC
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
||||++++|+++|||||||+||+++++.+.+. +....+++|+|+||||++.++.||+|++|++|++++.|+|+|+++.+
T Consensus 486 lARall~~~~ililDE~ts~lD~~t~~~i~~~-l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 564 (574)
T PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILEL-LAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ 564 (574)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcC
Confidence 99999999999999999999999999998765 44555789999999999999999999999999999999999999999
Q ss_pred chHHHHHH
Q 000481 810 TAFEQLVN 817 (1467)
Q Consensus 810 ~~~~~~~~ 817 (1467)
+.|+++++
T Consensus 565 g~y~~l~~ 572 (574)
T PRK11160 565 GRYYQLKQ 572 (574)
T ss_pred cHHHHHHh
Confidence 99998864
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-66 Score=659.58 Aligned_cols=542 Identities=18% Similarity=0.260 Sum_probs=418.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRG-EENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1467)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 349 (1467)
+.+.+++.++...++.++..++.++.|+++..++|..... .........++.++++..++..++.....+...+.+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (592)
T PRK10790 17 YGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGV 96 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777778888888999999999999999865322 111111112222233334444555555556677888888
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1467)
Q Consensus 350 r~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1467)
...++..+|+|.++.+...+++.++|+++|++++|++.+.+.... +..+....+.+++++++++..-++.+++.+++++
T Consensus 97 ~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~ 176 (592)
T PRK10790 97 VQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFP 176 (592)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999875443 2233333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHH
Q 000481 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKW-LSEAQLRKAY-GTVI 506 (1467)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~-l~~~~~~~~~-~~~~ 506 (1467)
+.+.+.....+..++..++.++..++..+...|.++|+++||.|+.|+.+.++..+..++..+. .+........ ..+.
T Consensus 177 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (592)
T PRK10790 177 AVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLL 256 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455666677777777888888999999999999999999998888777765543332 2211111111 1111
Q ss_pred HHHHHHHHH-HHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q 000481 507 YWMSPTIIS-SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585 (1467)
Q Consensus 507 ~~~~~~~~~-~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~ 585 (1467)
.....++.. ++.+.++ ...+.++.+.+++++.++..+..|+..++.....+.++..+.+|+.++++.++.+... .
T Consensus 257 ~~~~~~~~~~~~~~~~~--~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~- 332 (592)
T PRK10790 257 SLFSALILCGLLMLFGF--SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN-D- 332 (592)
T ss_pred HHHHHHHHHHHHHHHHH--HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC-C-
Confidence 111111111 1222233 2357899999999999999999999999999999999999999999999765432211 1
Q ss_pred ccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------
Q 000481 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1467)
Q Consensus 586 ~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------- 658 (1467)
......+.|+++|++|+|++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 333 -~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~ 409 (592)
T PRK10790 333 -DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS 409 (592)
T ss_pred -ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCC
Confidence 11122356999999999974 25799999999999999999999999999999999999999999999987
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
+|+||||+|++|++||+|||.+|++.+++++.+++++++++++++.+|+|++|.+||+|.+||||||||++|||
T Consensus 410 ~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialAR 489 (592)
T PRK10790 410 HSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALAR 489 (592)
T ss_pred HHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 39999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchH
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~ 812 (1467)
|++++|+|+|||||||+||+++++++.+.+ ....+++|+|+||||++.++.||+|++|++|++++.|+|+|+++.++.|
T Consensus 490 aLl~~~~illlDEpts~LD~~t~~~i~~~l-~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y 568 (592)
T PRK10790 490 VLVQTPQILILDEATANIDSGTEQAIQQAL-AAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRY 568 (592)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHH-HHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHH
Confidence 999999999999999999999999987654 4455689999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 000481 813 EQLVNAHR 820 (1467)
Q Consensus 813 ~~~~~~~~ 820 (1467)
+++++.+.
T Consensus 569 ~~l~~~~~ 576 (592)
T PRK10790 569 WQMYQLQL 576 (592)
T ss_pred HHHHHHHh
Confidence 99887553
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-68 Score=676.02 Aligned_cols=483 Identities=24% Similarity=0.380 Sum_probs=356.6
Q ss_pred CcEEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 593 RSVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
..++++|++++|.... ..++|+||||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3689999999996322 24799999999999999999999999999999999999999999987643
Q ss_pred --------------eEEEEccCC--cCC-CCCHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccc
Q 000481 659 --------------SIAYVSQTS--WIQ-SGSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEI 713 (1467)
Q Consensus 659 --------------~i~yv~Q~~--~l~-~~ti~eNi~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~i 713 (1467)
.||||+|+| -++ ..||+|||.++. ..+. ++..++++..++.+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 489999998 354 469999998752 1222 234445555554210 0122
Q ss_pred cCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-CCEEEEE
Q 000481 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVL 791 (1467)
Q Consensus 714 g~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l 791 (1467)
.....+|||||||||+||||++.+|++|||||||++||+.+.+.+.+.+.....+ |+|+|+|||+++.+.. ||+|++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 3567799999999999999999999999999999999999999987654443333 8999999999999865 8999999
Q ss_pred eCCeEeEecChHHHHhcCc-hHH-HHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccc
Q 000481 792 EGGQITQSGNYQELLLAGT-AFE-QLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKG 869 (1467)
Q Consensus 792 ~~G~i~~~G~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1467)
++|+|++.|+++++..... .|. .+... .+.. .
T Consensus 243 ~~G~i~~~g~~~~~~~~~~~~~~~~l~~~----------------------------~~~~-------~----------- 276 (623)
T PRK10261 243 YQGEAVETGSVEQIFHAPQHPYTRALLAA----------------------------VPQL-------G----------- 276 (623)
T ss_pred eCCeecccCCHHHhhcCCCChhhhhhhhc----------------------------cCcc-------c-----------
Confidence 9999999999877643210 000 00000 0000 0
Q ss_pred cCCcchHHHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHH
Q 000481 870 LTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASA 949 (1467)
Q Consensus 870 ~~~~~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~ 949 (1467)
+. .|..
T Consensus 277 -------~~--~~~~----------------------------------------------------------------- 282 (623)
T PRK10261 277 -------AM--KGLD----------------------------------------------------------------- 282 (623)
T ss_pred -------cc--cccc-----------------------------------------------------------------
Confidence 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000481 950 VFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGI 1029 (1467)
Q Consensus 950 ~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~ 1029 (1467)
.| ++ .+.
T Consensus 283 -------------------------------~~---------~~---------------~~~------------------ 289 (623)
T PRK10261 283 -------------------------------YP---------RR---------------FPL------------------ 289 (623)
T ss_pred -------------------------------CC---------cc---------------ccc------------------
Confidence 00 00 000
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHH
Q 000481 1030 MTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDAS 1109 (1467)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~ 1109 (1467)
....
T Consensus 290 -----------------------------------~~~~----------------------------------------- 293 (623)
T PRK10261 290 -----------------------------------ISLE----------------------------------------- 293 (623)
T ss_pred -----------------------------------cccc-----------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000481 1110 LFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189 (1467)
Q Consensus 1110 ~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~ 1189 (1467)
....
T Consensus 294 ----------------------------------~~~~------------------------------------------ 297 (623)
T PRK10261 294 ----------------------------------HPAK------------------------------------------ 297 (623)
T ss_pred ----------------------------------cccc------------------------------------------
Confidence 0000
Q ss_pred hhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCC---------CCcceeceeEEeeCCcEEEEEcCCCCcHHHHH
Q 000481 1190 FMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPN---------APLVLKGITCTFSEGTRVGVVGRTGSGKTTLI 1260 (1467)
Q Consensus 1190 ~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~---------~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~ 1260 (1467)
..+.+.+ .. .+ +...-++++|++++|... ...+|+||||+|++||++||+|+||||||||+
T Consensus 298 --~~~~~~~----~~-~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLl 367 (623)
T PRK10261 298 --QEPPIEQ----DT-VV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTG 367 (623)
T ss_pred --cCccccc----cc-cc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHH
Confidence 0000000 00 00 011249999999999521 13599999999999999999999999999999
Q ss_pred HHHhcccCCCcceEEECCeeCCCCCHH---HHhhccEEeccCC--cccc-cchHHhcC-CC---CCCC----HHHHHHHH
Q 000481 1261 SALFRLVEPAGGSILIDGVDICSMGLK---DLRVKLSIIPQEP--TLFR-GSVRTNLD-PL---GLYS----DDEIWKAL 1326 (1467)
Q Consensus 1261 ~~L~rl~~~~~G~I~IDG~dI~~i~l~---~LR~~i~iIpQdp--~LF~-gTIR~NLd-p~---~~~s----d~ei~~aL 1326 (1467)
++|.|+.+|++|+|.+||.++...+.. .+|++|+||||+| .++. -|+++|+. +. +..+ ++++.++|
T Consensus 368 k~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L 447 (623)
T PRK10261 368 RALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLL 447 (623)
T ss_pred HHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999877643 4678899999998 3665 49999984 21 1112 24567788
Q ss_pred HHcCCc-hHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcE
Q 000481 1327 EKCQLK-TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCT 1403 (1467)
Q Consensus 1327 ~~~~l~-~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~T 1403 (1467)
+.+++. +.....| ..||||||||++|||||+.+|+||||||||++||..+.+.|.+.|++.. .+.|
T Consensus 448 ~~~gL~~~~~~~~~-----------~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~t 516 (623)
T PRK10261 448 ERVGLLPEHAWRYP-----------HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIA 516 (623)
T ss_pred HHcCCCHHHhhCCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 888885 3333322 3699999999999999999999999999999999999999999998753 3789
Q ss_pred EEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cCChh-HHHHH
Q 000481 1404 VITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNSSF-SKLVA 1449 (1467)
Q Consensus 1404 vI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f-~~lv~ 1449 (1467)
+|+|||+++.+.+ ||||+||++|+|+|.|+++++.+ +...| +.++.
T Consensus 517 vi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 517 YLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHh
Confidence 9999999999976 99999999999999999999987 34444 33443
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-65 Score=652.06 Aligned_cols=548 Identities=20% Similarity=0.261 Sum_probs=425.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGM 347 (1467)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (1467)
.+.+++.+++.+....++.++..++.++.|+++..++|..-... .......++.++++..++..+......+...+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (576)
T TIGR02204 9 LWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKD-SSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGE 87 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777888888999999999999999998632111 11111112222223333334444445566778889
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 348 RMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVL 426 (1467)
Q Consensus 348 ~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~ 426 (1467)
++...++..+|+|.++++...+++.+.|++++++++|++.+.++.. .+..++...+.+++++++++...++.+++.++.
T Consensus 88 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 167 (576)
T TIGR02204 88 RVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167 (576)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999888889999999999999999987643 233444444445555444444433333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000481 427 FLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQ-LRKAYGTV 505 (1467)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~-~~~~~~~~ 505 (1467)
+++...+...+.+.+++..++.++..++..+.+.|.++|+++||.+++|+.+.++.++..++..+...+.. .......+
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (576)
T TIGR02204 168 VPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAI 247 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344557778888888889999999999999999999999999999887777766655444322222 21112222
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q 000481 506 IYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR 585 (1467)
Q Consensus 506 ~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~ 585 (1467)
...+..+...+++++|..++.++.+|++.++++..++..+..|+..++..+..+.+++++++|+.++++.++..+.....
T Consensus 248 ~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~ 327 (576)
T TIGR02204 248 VIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHP 327 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCC
Confidence 11222222333444555555568999999999999999999999999999999999999999999999764431111111
Q ss_pred c-cccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------
Q 000481 586 I-SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658 (1467)
Q Consensus 586 ~-~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------ 658 (1467)
. ...+..+.|+++|++|+|++++++++|+|+||+++|||+++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 328 ~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~ 407 (576)
T TIGR02204 328 KTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL 407 (576)
T ss_pred ccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhc
Confidence 1 111123469999999999764346799999999999999999999999999999999999999999999987
Q ss_pred -------eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 659 -------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 659 -------~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
.++||||+|++|++||+|||.+|.+ .+++++.++++.+++.++++.+|+|++|.+||+|.+||||||||++|
T Consensus 408 ~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~l 487 (576)
T TIGR02204 408 DPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAI 487 (576)
T ss_pred CHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHH
Confidence 4999999999999999999999875 67889999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGT 810 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~ 810 (1467)
|||++++|+++|||||||+||+++++.+++.+ ....+++|+|+||||++.++.+|+|++|++|++++.|+|+++.+.++
T Consensus 488 aRal~~~~~ililDEpts~lD~~~~~~i~~~l-~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~ 566 (576)
T TIGR02204 488 ARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGG 566 (576)
T ss_pred HHHHHhCCCeEEEeCcccccCHHHHHHHHHHH-HHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCC
Confidence 99999999999999999999999999887654 44457899999999999999999999999999999999999999988
Q ss_pred hHHHHHH
Q 000481 811 AFEQLVN 817 (1467)
Q Consensus 811 ~~~~~~~ 817 (1467)
.|.++++
T Consensus 567 ~~~~l~~ 573 (576)
T TIGR02204 567 LYARLAR 573 (576)
T ss_pred hHHHHHh
Confidence 8888764
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-65 Score=661.33 Aligned_cols=545 Identities=21% Similarity=0.242 Sum_probs=432.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1467)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1467)
+..++.+++.+....++.++..++.++.|++++.++|.+.... .....+.+++++++..++..++.....+...+++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~-~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (694)
T TIGR01846 131 IPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHR-GLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSR 209 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777778888888899999999999999998764221 222222333344444455555555555667788899
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLF 427 (1467)
Q Consensus 349 ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~ 427 (1467)
+...++..+|+|.++++...+++.++|++++++ +|++.+.++.. .+.......+.+++.+++++..-++.+++.++++
T Consensus 210 ~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 288 (694)
T TIGR01846 210 IDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSL 288 (694)
T ss_pred HHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 69999988643 2333332333333344444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000481 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVI 506 (1467)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~-~~~~ 506 (1467)
++...+...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.++.++..++..+...+....... ....
T Consensus 289 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (694)
T TIGR01846 289 VCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAI 368 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566777778888888888999999999999999999999999888777766655544433222222221 2222
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccc
Q 000481 507 YWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRI 586 (1467)
Q Consensus 507 ~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~ 586 (1467)
..+..+...++.++|.+++.++.+|.|.++++..+...+..|+..+...+..+.+++++++|+.++++.++..+.. ...
T Consensus 369 ~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~ 447 (694)
T TIGR01846 369 ELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLA 447 (694)
T ss_pred HHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCC
Confidence 2222233334455666666668999999999999999999999999999999999999999999999765433211 111
Q ss_pred cccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------
Q 000481 587 SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1467)
Q Consensus 587 ~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------- 658 (1467)
..+...+.|+++|++|+|+++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 448 ~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~ 526 (694)
T TIGR01846 448 ALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP 526 (694)
T ss_pred CCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCH
Confidence 112234579999999999754 35799999999999999999999999999999999999999999999988
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
.|+||||+|++|++||+|||.++.+ .+++++.++++.++++++++.+|+|.+|.+|++|.+||||||||++|||
T Consensus 527 ~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lAR 606 (694)
T TIGR01846 527 AWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIAR 606 (694)
T ss_pred HHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHH
Confidence 3899999999999999999999875 7789999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchH
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~ 812 (1467)
|++++|+|+|||||||+||+++++.+.+.+ ....+++|+|+||||++.++.||+|++|++|+|++.|+|+|+++.++.|
T Consensus 607 all~~~~ililDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y 685 (694)
T TIGR01846 607 ALVGNPRILIFDEATSALDYESEALIMRNM-REICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLY 685 (694)
T ss_pred HHHhCCCEEEEECCCcCCCHHHHHHHHHHH-HHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChH
Confidence 999999999999999999999999987655 4445789999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000481 813 EQLVNA 818 (1467)
Q Consensus 813 ~~~~~~ 818 (1467)
.++++.
T Consensus 686 ~~l~~~ 691 (694)
T TIGR01846 686 ARLWQQ 691 (694)
T ss_pred HHHHHh
Confidence 998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-65 Score=600.78 Aligned_cols=529 Identities=23% Similarity=0.304 Sum_probs=421.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 282 IAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQ 361 (1467)
Q Consensus 282 ~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~ 361 (1467)
..++.++..++...+-.++...++.+-.++. ....+.+++.++++.++++++...-....++.+.++|..++..+++|.
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777666654433221 233344556667777788888777777889999999999999999999
Q ss_pred HcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 362 LKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHL---TWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPF 437 (1467)
Q Consensus 362 l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~---~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~~~~ 437 (1467)
.++++...++.++|+.+++++.-++.+..+.. +++. ....|+.++++++...+.-+. +-++.+.++.+..+.+
T Consensus 84 ~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aal---Illit~PlIPlfMilv 160 (559)
T COG4988 84 AKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAAL---ILLITAPLIPLFMILV 160 (559)
T ss_pred HhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHH
Confidence 99999988899999999999999999877543 2222 223344444444444333333 2233333333344456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 438 AKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE----KFKSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPTI 513 (1467)
Q Consensus 438 ~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~----~f~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~~ 513 (1467)
++..++..+++++....-....-+.|+|+.++|.|+..+ ++.+.-++.|+.-++.+|.......+.-++.. -.+
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~--lsi 238 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAY--LSI 238 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 777888888888888888889999999999999999754 45566677888888887755443333222222 122
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc-ccccCCC
Q 000481 514 ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR-ISLQKSD 592 (1467)
Q Consensus 514 ~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~-~~~~~~~ 592 (1467)
..++.+++..+.+.+.++....+.++.+.--+..|++.+...++.-+++..+.+++..|++.+....+.... .....+.
T Consensus 239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~ 318 (559)
T COG4988 239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP 318 (559)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence 233456666666535899999999999999999999999999999999999999999999887654332211 1111122
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 659 (1467)
..++.+|++|.|+++ +++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.++| +
T Consensus 319 ~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~ 396 (559)
T COG4988 319 IEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ 396 (559)
T ss_pred ceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence 345556999999864 3899999999999999999999999999999999999999999999987 4
Q ss_pred EEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCC
Q 000481 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1467)
Q Consensus 660 i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~ 738 (1467)
++||+|+|.+|++||||||.++++ .+++++.++++.+++.+.++. |+|.+|.|||+|.+|||||+|||+||||+++++
T Consensus 397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998 678999999999999999999 999999999999999999999999999999999
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHHHHH
Q 000481 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1467)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~ 818 (1467)
++||||||||+||+++++.|.+ .+....++||+|+||||++.+..+|+|++|++|+++++|+|+++.++++.|++++.+
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~-~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~ 554 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQ-ALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQ 554 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHH-HHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHH
Confidence 9999999999999999998865 455666789999999999999999999999999999999999999999999999876
Q ss_pred hh
Q 000481 819 HR 820 (1467)
Q Consensus 819 ~~ 820 (1467)
+.
T Consensus 555 q~ 556 (559)
T COG4988 555 QE 556 (559)
T ss_pred Hh
Confidence 54
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=646.82 Aligned_cols=541 Identities=18% Similarity=0.247 Sum_probs=413.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 272 TNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRS 351 (1467)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~ 351 (1467)
.+.+++.++..+++.++..++.++.|+++..++|.+.... .... +++.+++..++..+......+...++..+++.
T Consensus 14 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK13657 14 LGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-DIFP---LLAAWAGFGLFNIIAGVLVARHADRLAHRRRL 89 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777778888888999999999999998764321 2111 11111111222222232333456677788888
Q ss_pred HHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 352 ALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLIC 430 (1467)
Q Consensus 352 ~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~ 430 (1467)
.++..+|+|.++++...+.+.++|++++++++|++.+.+... .+.......+..++.+++++..-.+.+++.++++++.
T Consensus 90 ~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~ 169 (588)
T PRK13657 90 AVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVY 169 (588)
T ss_pred HHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999875432 2222222223233333333333233333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000481 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSE-AQLRKAYGTVIYWM 509 (1467)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~-~~~~~~~~~~~~~~ 509 (1467)
..+...+.+..++.+++.++..++..+...|.++|+++||.|+.|+.+.++..+.-++..+...+ ..............
T Consensus 170 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK13657 170 TLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAA 249 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778888888888999999999999999999999999987666555444333222111 11111111122222
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccc
Q 000481 510 SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQ 589 (1467)
Q Consensus 510 ~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~ 589 (1467)
..+...++.+++.+++.++.+|++.+++++.++..+..|+..+...+..+.++..+++|+.+++..++..++........
T Consensus 250 ~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 329 (588)
T PRK13657 250 STITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLG 329 (588)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcC
Confidence 23333334444555555689999999999999999999999999999999999999999999987643221111111111
Q ss_pred CCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------
Q 000481 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1467)
Q Consensus 590 ~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------- 658 (1467)
...+.|+++|++|+|+++ +++|+|+|+++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 330 ~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~ 407 (588)
T PRK13657 330 RVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASL 407 (588)
T ss_pred CCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHH
Confidence 223469999999999742 4699999999999999999999999999999999999999999999987
Q ss_pred --eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 659 --SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 659 --~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
.|+||||+|++|++||||||.++++ .++++++++++.++++++++.+|+|.+|.+|++|.+||||||||++||||++
T Consensus 408 r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall 487 (588)
T PRK13657 408 RRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALL 487 (588)
T ss_pred HhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 5999999999999999999999975 6788999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHH
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~ 815 (1467)
++|+|+|||||||+||+++++.+++.+. ...+++|+|+||||++.++.||+|++|++|++++.|+|+++++.++.|.++
T Consensus 488 ~~~~iliLDEpts~LD~~t~~~i~~~l~-~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l 566 (588)
T PRK13657 488 KDPPILILDEATSALDVETEAKVKAALD-ELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAAL 566 (588)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHH-HHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHH
Confidence 9999999999999999999999976554 445689999999999999999999999999999999999999988899998
Q ss_pred HHHh
Q 000481 816 VNAH 819 (1467)
Q Consensus 816 ~~~~ 819 (1467)
++.+
T Consensus 567 ~~~~ 570 (588)
T PRK13657 567 LRAQ 570 (588)
T ss_pred HHHh
Confidence 7643
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-65 Score=644.30 Aligned_cols=530 Identities=22% Similarity=0.277 Sum_probs=410.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 000481 286 ALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLS 365 (1467)
Q Consensus 286 ~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~l~l~ 365 (1467)
.++..++..+.|++++.++|............+.+++++++..++..++.....+...+.+.++...++..+|+|.++++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34556677889999999999764322122222233333444444455554444455667888889999999999999999
Q ss_pred ccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 366 SLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGL-GALPGLVLFLICGLLNVPFAKILQK 443 (1467)
Q Consensus 366 ~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~-~~l~gl~~~~~~~~~~~~~~~~~~~ 443 (1467)
...+++.++|++++++++|++.+..... .+..++..++..++++++++..++| .+++.++++++...+...+.++..+
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999976442 2444555444444444444333333 3333334444444445556677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 444 CQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSE-AQLRKAYGTVIYWMSPTIISSVIFLGC 522 (1467)
Q Consensus 444 ~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~ 522 (1467)
..++.++..++..+.+.|.++|+++||.|++|+.+.++..+..++..+...+ ................+...++.++|.
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888888999999999999999999988766665544332222111 111111112222222222233344555
Q ss_pred HHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCcEEEEeEEE
Q 000481 523 ALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNF 602 (1467)
Q Consensus 523 ~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~I~~~~~sf 602 (1467)
+++.++.+|+|.+++++.++..+..|+..+++.+..+.+++++.+|+.++++.++..++.. ...+...+.|+++|++|
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~--~~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS--EPVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC--CCCCCCCCcEEEEEEEE
Confidence 6666689999999999999999999999999999999999999999999997653321111 11112235699999999
Q ss_pred EeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEEEEccCCcC
Q 000481 603 SWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWI 669 (1467)
Q Consensus 603 ~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l 669 (1467)
+|+.+ +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++||+|+|++
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99753 35799999999999999999999999999999999999999999999987 48999999999
Q ss_pred CCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000481 670 QSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1467)
Q Consensus 670 ~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~s 748 (1467)
|++|++|||.+|.+ .++++++++++.+++++++..+|+|++|.+|++|.+||||||||++||||++++|+++|||||||
T Consensus 401 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts 480 (569)
T PRK10789 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALS 480 (569)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 99999999999964 78889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHHHHHh
Q 000481 749 AVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819 (1467)
Q Consensus 749 alD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~ 819 (1467)
+||+++++.+.+.+ ....+++|+|+||||++.++.||+|++|++|++++.|+|+++++.++.|.++++.+
T Consensus 481 ~LD~~~~~~i~~~l-~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 481 AVDGRTEHQILHNL-RQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred cCCHHHHHHHHHHH-HHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 99999999998754 44457899999999999999999999999999999999999999999999887654
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-65 Score=643.09 Aligned_cols=505 Identities=19% Similarity=0.240 Sum_probs=383.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1467)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir 350 (1467)
+.+.+++.++...++.++..++..+.|++++.++|........... +.++.++++..++..+......+...+.+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (529)
T TIGR02868 7 LLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLYL-SVAAVAVRAFGIGRAVFRYLERLVGHDAALRSL 85 (529)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677778888889999999999999999865432211111 111111212333344444444455667888888
Q ss_pred HHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1467)
Q Consensus 351 ~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1467)
..++..+|+|.++++...+++.++|++++++++|++++.+.... +..+....+.+++++++++..-+..+++.++.+++
T Consensus 86 ~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~ 165 (529)
T TIGR02868 86 GRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLL 165 (529)
T ss_pred HHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876543 33344444444455544444333333333322222
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000481 430 CGLLNVPF-AKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY-GTVIY 507 (1467)
Q Consensus 430 ~~~~~~~~-~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~-~~~~~ 507 (1467)
+..+...+ .+..++..++..+..++..+.+.|.++|+++||.|++|+.+.++.++..++..+...+....... ..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (529)
T TIGR02868 166 AGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQL 245 (529)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223 33345556667778899999999999999999999999988888777665544433332222222 22222
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc--
Q 000481 508 WMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRR-- 585 (1467)
Q Consensus 508 ~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~-- 585 (1467)
....+...++.+++.+++.++.++.+.+.+++.+...+..|+..++..+..+.+++++.+|+.++++.++..++....
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~ 325 (529)
T TIGR02868 246 LAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAA 325 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCC
Confidence 222222333445555555568899999999999999999999999999999999999999999999765432111100
Q ss_pred ccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------
Q 000481 586 ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------- 658 (1467)
Q Consensus 586 ~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------- 658 (1467)
.......+.|+++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 326 ~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~ 403 (529)
T TIGR02868 326 GALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQ 403 (529)
T ss_pred cccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHH
Confidence 0011123469999999999753 4699999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
.|+||||+|++|++||||||.+|.+ .++++++++++.|+++++++.+|+|++|.|||+|.+||||||||++|||
T Consensus 404 ~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiAR 483 (529)
T TIGR02868 404 DELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALAR 483 (529)
T ss_pred HHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHH
Confidence 7999999999999999999999975 6889999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCc
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~ 779 (1467)
|++++|+|+|||||||+||+++++.+.+.+ ....+++|+|+||||+
T Consensus 484 all~~~~iliLDE~TSaLD~~te~~I~~~l-~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 484 ALLADAPILLLDEPTEHLDAGTESELLEDL-LAALSGKTVVVITHHL 529 (529)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHhcCCCEEEEEecCC
Confidence 999999999999999999999999997655 4556789999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-65 Score=645.59 Aligned_cols=480 Identities=17% Similarity=0.165 Sum_probs=378.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 000481 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASG 1020 (1467)
Q Consensus 941 y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~ 1020 (1467)
++++.++..++.+...++....+.+....++.++++++++.|+.||++.++|++++|+++|++.++..+. .+..++..+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~~ 137 (555)
T TIGR01194 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIAL 137 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHHH
Confidence 4455566677888888999999999999999999999999999999999999999999999999998775 366667777
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHH--HHHH
Q 000481 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVD--RFFQ 1098 (1467)
Q Consensus 1021 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~--~f~~ 1098 (1467)
+.+++.++++++.+|.+.++++..+++...+..+..+..++..+......+.+.+++.|.+.|+.+||+|+.++ ...+
T Consensus 138 ~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~ 217 (555)
T TIGR01194 138 AIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHG 217 (555)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHH
Confidence 77777888888899988776655444444444333333333333344455678899999999999999999854 4455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1099 NYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV-LIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYL 1177 (1467)
Q Consensus 1099 ~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~-~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~l 1177 (1467)
++.+..+...+.................++..+ ..++.++ ....+.++.|.+..++.|+..+..++..+...+.++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~ 294 (555)
T TIGR01194 218 AIQESANNIADLHIIEILIFIAAENFGQLLFFL---LIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPIL 294 (555)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544443322211111111111111111 1111111 111257888888888889999999999999999999
Q ss_pred HHHhhHHHHHHHhhcCCCCCCCCc--CC-CCC--CCCCCCcceEEEEEEEEEeCCC---CCcceeceeEEeeCCcEEEEE
Q 000481 1178 ANYIISVERIKQFMHIPPEPPAIV--ED-KRP--PSSWPFKGRIELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVV 1249 (1467)
Q Consensus 1178 e~~~~sveRi~~~~~~~~e~~~~~--~~-~~~--~~~wp~~g~I~f~nvs~~Y~~~---~~~vLk~is~~I~~GekVgIV 1249 (1467)
+....|.+|+.++.+.+++++... ++ ... ....+..+.|+|+||+|+|++. .+++|+|+||+|++||++|||
T Consensus 295 ~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aiv 374 (555)
T TIGR01194 295 AQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIV 374 (555)
T ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEE
Confidence 999999999999976432221110 00 000 0111234789999999999643 236999999999999999999
Q ss_pred cCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHc
Q 000481 1250 GRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKC 1329 (1467)
Q Consensus 1250 GrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~ 1329 (1467)
|+||||||||+++|.|+++|++|+|.+||+|+++++.+++|+++++|||||.+|++|+|+|+.| ..+|++++++++.+
T Consensus 375 G~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~ 452 (555)
T TIGR01194 375 GENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGE--HASLDNAQQYLQRL 452 (555)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccccc--chhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999754 46899999999999
Q ss_pred CCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-H-cCCcEEEEE
Q 000481 1330 QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQ-E-FSNCTVITV 1407 (1467)
Q Consensus 1330 ~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~-~-~~~~TvI~I 1407 (1467)
++++++..+|+|+||. .+||||||||++||||++++|+|||||||||+||++|++.|++.+.+ . .+++|+|+|
T Consensus 453 ~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiii 527 (555)
T TIGR01194 453 EIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIII 527 (555)
T ss_pred CCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999999999999995 68999999999999999999999999999999999999999887643 2 468999999
Q ss_pred ccCchhhcccCEEEEEeCCEEEEe
Q 000481 1408 AHRVPTVIDSDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1408 AHRl~ti~~~DrIlVl~~G~ivE~ 1431 (1467)
|||++++..||+|+||++|+++|.
T Consensus 528 sH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 528 SHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred eccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999985
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-67 Score=660.70 Aligned_cols=447 Identities=23% Similarity=0.401 Sum_probs=346.3
Q ss_pred cEEEEeEEEEeCCC-CCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC---------
Q 000481 594 SVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g--------- 658 (1467)
.++++|++++|+.. ..+++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124799999999999999999999999999999999999986 799998754
Q ss_pred --------eEEEEccCCc--CC-CCCHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCc
Q 000481 659 --------SIAYVSQTSW--IQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1467)
Q Consensus 659 --------~i~yv~Q~~~--l~-~~ti~eNi~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~ 719 (1467)
.++|++|++. ++ ..|+++|+.++. ..+ .++..++++.+++.+... ....+..+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 3899999984 33 359999987421 122 234455666665532110 11246679
Q ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEe
Q 000481 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1467)
Q Consensus 720 LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1467)
|||||||||+||||++.+|+++||||||++||+++.+.+.+.+.+... .|+|+|+|||+++.+.. ||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999998765544333 38999999999999875 8999999999999
Q ss_pred EecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHH
Q 000481 798 QSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDE 877 (1467)
Q Consensus 798 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 877 (1467)
+.|+.+++..... .
T Consensus 237 ~~g~~~~~~~~~~----------------------------------------------------~-------------- 250 (529)
T PRK15134 237 EQNRAATLFSAPT----------------------------------------------------H-------------- 250 (529)
T ss_pred EeCCHHHHhhCCC----------------------------------------------------C--------------
Confidence 9888765431000 0
Q ss_pred HhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 000481 878 EMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSF 957 (1467)
Q Consensus 878 ~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~ 957 (1467)
. +...
T Consensus 251 ----------~---~~~~-------------------------------------------------------------- 255 (529)
T PRK15134 251 ----------P---YTQK-------------------------------------------------------------- 255 (529)
T ss_pred ----------H---HHHH--------------------------------------------------------------
Confidence 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000481 958 FAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQV 1037 (1467)
Q Consensus 958 ~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 1037 (1467)
++
T Consensus 256 ----------------~~-------------------------------------------------------------- 257 (529)
T PRK15134 256 ----------------LL-------------------------------------------------------------- 257 (529)
T ss_pred ----------------HH--------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1038 LVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGV 1117 (1467)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~ 1117 (1467)
+.
T Consensus 258 ----------------------------~~-------------------------------------------------- 259 (529)
T PRK15134 258 ----------------------------NS-------------------------------------------------- 259 (529)
T ss_pred ----------------------------Hh--------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCC
Q 000481 1118 MEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEP 1197 (1467)
Q Consensus 1118 ~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~ 1197 (1467)
.. + .++..
T Consensus 260 --------------------------~~----------------------------------------~------~~~~~ 267 (529)
T PRK15134 260 --------------------------EP----------------------------------------S------GDPVP 267 (529)
T ss_pred --------------------------Cc----------------------------------------c------ccccc
Confidence 00 0 00000
Q ss_pred CCCcCCCCCCCCCCCcceEEEEEEEEEeCC---------CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC
Q 000481 1198 PAIVEDKRPPSSWPFKGRIELRQLKIRYRP---------NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1467)
Q Consensus 1198 ~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~---------~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~ 1268 (1467)
+ . ++ ...-|+++|++++|.. +...+|+|+||+|++||.+||+|+||||||||+++|.|+++
T Consensus 268 ~---~---~~----~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 337 (529)
T PRK15134 268 L---P---EP----ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN 337 (529)
T ss_pred c---C---CC----CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 0 0 00 0114899999999952 12469999999999999999999999999999999999984
Q ss_pred CCcceEEECCeeCCCCCHHH---HhhccEEeccCC--ccccc-chHHhcCC-C---C-CCC----HHHHHHHHHHcCCch
Q 000481 1269 PAGGSILIDGVDICSMGLKD---LRVKLSIIPQEP--TLFRG-SVRTNLDP-L---G-LYS----DDEIWKALEKCQLKT 1333 (1467)
Q Consensus 1269 ~~~G~I~IDG~dI~~i~l~~---LR~~i~iIpQdp--~LF~g-TIR~NLdp-~---~-~~s----d~ei~~aL~~~~l~~ 1333 (1467)
++|+|.+||.++...+... +|++++++||+| .+|.. |+++|+.. . + ..+ ++.+.++++..++.+
T Consensus 338 -~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 416 (529)
T PRK15134 338 -SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP 416 (529)
T ss_pred -CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH
Confidence 8999999999998776544 478899999998 36664 99999952 1 1 011 245667788888752
Q ss_pred -HHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccC
Q 000481 1334 -TISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHR 1410 (1467)
Q Consensus 1334 -~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHR 1410 (1467)
.... + ..+||||||||++||||++.+|+||||||||++||..+.+.+.+.|++.. .++|||+|+|+
T Consensus 417 ~~~~~-------~----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd 485 (529)
T PRK15134 417 ETRHR-------Y----PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHD 485 (529)
T ss_pred HHHhc-------C----CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 3222 2 24699999999999999999999999999999999999999999998764 37899999999
Q ss_pred chhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1411 VPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1411 l~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++.+.. ||||++|++|++++.|+++++++
T Consensus 486 ~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 515 (529)
T PRK15134 486 LHVVRALCHQVIVLRQGEVVEQGDCERVFA 515 (529)
T ss_pred HHHHHHhcCeEEEEECCEEEEEcCHHHHhc
Confidence 999976 99999999999999999999986
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-67 Score=655.44 Aligned_cols=440 Identities=23% Similarity=0.357 Sum_probs=340.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC--CCcEEEEcC-------------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g------------- 658 (1467)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 5899999999953 4699999999999999999999999999999999999986 899999876
Q ss_pred -eEEEEccCCcCCC-CCHHHHHhcCCC------CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 -SIAYVSQTSWIQS-GSIRDNILYGKP------MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 -~i~yv~Q~~~l~~-~ti~eNi~~g~~------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.++||+|++.++. .|++||+.++.. .+.+ +.+++++..++. .....+..+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-----------INPATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-----------CCcccchhhCCHHHHH
Confidence 2899999987765 599999998743 1222 223333333321 1123566789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
|++||||++.+|+++||||||++||+.....+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999887555544568999999999999875 899999999999876643221
Q ss_pred HhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCccc
Q 000481 806 LLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVG 885 (1467)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~ 885 (1467)
... +
T Consensus 231 ~~~--------------------------------------------------------------------~-------- 234 (506)
T PRK13549 231 TED--------------------------------------------------------------------D-------- 234 (506)
T ss_pred CHH--------------------------------------------------------------------H--------
Confidence 000 0
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLK 965 (1467)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~ 965 (1467)
....
T Consensus 235 ------~~~~---------------------------------------------------------------------- 238 (506)
T PRK13549 235 ------IITM---------------------------------------------------------------------- 238 (506)
T ss_pred ------HHHH----------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000481 966 ASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAM 1045 (1467)
Q Consensus 966 ~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1045 (1467)
+
T Consensus 239 --------~----------------------------------------------------------------------- 239 (506)
T PRK13549 239 --------M----------------------------------------------------------------------- 239 (506)
T ss_pred --------h-----------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1046 VAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRV 1125 (1467)
Q Consensus 1046 ~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl 1125 (1467)
. +
T Consensus 240 --------------------~------------------------~---------------------------------- 241 (506)
T PRK13549 240 --------------------V------------------------G---------------------------------- 241 (506)
T ss_pred --------------------h------------------------C----------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCC
Q 000481 1126 EALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKR 1205 (1467)
Q Consensus 1126 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~ 1205 (1467)
. .. .+ ..|.++
T Consensus 242 -------------------~-~~------------------------------------~~-----~~~~~~-------- 252 (506)
T PRK13549 242 -------------------R-EL------------------------------------TA-----LYPREP-------- 252 (506)
T ss_pred -------------------c-Cc------------------------------------cc-----cccccc--------
Confidence 0 00 00 000000
Q ss_pred CCCCCCCcceEEEEEEEEEeCC-CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-CCcceEEECCeeCCC
Q 000481 1206 PPSSWPFKGRIELRQLKIRYRP-NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-PAGGSILIDGVDICS 1283 (1467)
Q Consensus 1206 ~~~~wp~~g~I~f~nvs~~Y~~-~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-~~~G~I~IDG~dI~~ 1283 (1467)
++ +...-|+++|++++|.. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.+++.
T Consensus 253 ~~---~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~ 329 (506)
T PRK13549 253 HT---IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKI 329 (506)
T ss_pred cC---CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCC
Confidence 00 01124999999999942 23459999999999999999999999999999999999998 599999999999876
Q ss_pred CCH-HHHhhccEEeccCC---cccc-cchHHhcCCC--CC------CCH----HHHHHHHHHcCCchHHhhCCCCccccc
Q 000481 1284 MGL-KDLRVKLSIIPQEP---TLFR-GSVRTNLDPL--GL------YSD----DEIWKALEKCQLKTTISSLPNKLDSSV 1346 (1467)
Q Consensus 1284 i~l-~~LR~~i~iIpQdp---~LF~-gTIR~NLdp~--~~------~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v 1346 (1467)
.+. +..|.+++|+||+| .+|. .|+.+|+... .. .+. +++.++++..++.+ +..+..+
T Consensus 330 ~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~ 403 (506)
T PRK13549 330 RNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT------ASPELAI 403 (506)
T ss_pred CCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC------CCccccc
Confidence 543 44678899999997 3665 5999999521 11 121 34566777776631 1123333
Q ss_pred ccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEe
Q 000481 1347 SDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLS 1424 (1467)
Q Consensus 1347 ~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~ 1424 (1467)
..||||||||++||||++++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||||++|+
T Consensus 404 ----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~ 479 (506)
T PRK13549 404 ----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMH 479 (506)
T ss_pred ----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 4699999999999999999999999999999999999999999988653 47899999999999876 99999999
Q ss_pred CCEEEEecChhHHh
Q 000481 1425 YGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1425 ~G~ivE~g~p~~Ll 1438 (1467)
+|+++..|+++++.
T Consensus 480 ~G~i~~~~~~~~~~ 493 (506)
T PRK13549 480 EGKLKGDLINHNLT 493 (506)
T ss_pred CCEEEEEeccccCC
Confidence 99999999988764
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=634.79 Aligned_cols=542 Identities=18% Similarity=0.227 Sum_probs=418.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1467)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir 350 (1467)
+++.+++.++...++.++..++..+.|++++.++|...... ... .++...++..++..+......+...++..+++
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKS-DVL---PTLALWAGFGVFNTIAYVLVAREADRLAHGRR 88 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888889999999999999999999764322 111 11111112223333333334455677888899
Q ss_pred HHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1467)
Q Consensus 351 ~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1467)
..++..+|+|.++++...+++.++|++++++++|++.+.++.. .+......++.+++.+++++..-+..+++.++++++
T Consensus 89 ~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~ 168 (585)
T TIGR01192 89 ATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGIL 168 (585)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986543 233333444444444444443333333333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000481 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEA-QLRKAYGTVIYW 508 (1467)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~-~~~~~~~~~~~~ 508 (1467)
...+...+.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.++.++..++..+...+. ........+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (585)
T TIGR01192 169 YILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRM 248 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555677777777888888889999999999999999999999877666655444322211111 111111112222
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccc
Q 000481 509 MSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISL 588 (1467)
Q Consensus 509 ~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~ 588 (1467)
...+...++.++|.+++.++.++.|.+++++.++..+..|+..++..+..+.+++.+++|+.++++.++..++.......
T Consensus 249 ~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~ 328 (585)
T TIGR01192 249 ASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPEL 328 (585)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCC
Confidence 22223334445555666668999999999999999999999999999999999999999999998764322111111111
Q ss_pred cCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------
Q 000481 589 QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------- 658 (1467)
Q Consensus 589 ~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------- 658 (1467)
+...+.++++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 329 ~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~ 406 (585)
T TIGR01192 329 PNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRES 406 (585)
T ss_pred CCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHH
Confidence 1223469999999999743 4689999999999999999999999999999999999999999999887
Q ss_pred ---eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 659 ---SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 659 ---~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
.++||||+|++|++|++|||.++.+ .++++.+++++.+++++++..+|+|++|.+|++|.+||||||||++||||+
T Consensus 407 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARal 486 (585)
T TIGR01192 407 LRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAI 486 (585)
T ss_pred HHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999865 678889999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHH
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~ 814 (1467)
+++|+++|||||||+||+++++.+.+.+ ....+++|+|+||||++.++.||+|++|++|++++.|+|+|++++++.|.+
T Consensus 487 l~~p~ililDEpts~LD~~~~~~i~~~l-~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~ 565 (585)
T TIGR01192 487 LKNAPILVLDEATSALDVETEARVKNAI-DALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYK 565 (585)
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHH-HHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHH
Confidence 9999999999999999999999987644 455678999999999999999999999999999999999999999999998
Q ss_pred HHHHh
Q 000481 815 LVNAH 819 (1467)
Q Consensus 815 ~~~~~ 819 (1467)
++..+
T Consensus 566 l~~~~ 570 (585)
T TIGR01192 566 LLRRS 570 (585)
T ss_pred HHHhC
Confidence 87644
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-64 Score=632.05 Aligned_cols=522 Identities=20% Similarity=0.221 Sum_probs=404.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALM 354 (1467)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~ 354 (1467)
+++.++...++.++..++.++.|++++.++|...... .....+.+++++++..++..++.....+...+.+.++...++
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 4 NKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG-SVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677778888889999999999999998653211 112222334444445555566666666777888999999999
Q ss_pred HHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 355 VAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW--FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGL 432 (1467)
Q Consensus 355 ~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~--~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~ 432 (1467)
..+|+|.++++.. ..++..+.+++|++++.+.... +..+...++.++.. ++++..-++.+++.++.+++...
T Consensus 83 ~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~l~~~ 156 (544)
T TIGR01842 83 QPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAVVLVG 156 (544)
T ss_pred HHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999873 2356678889999999875432 23333333333322 23333333333333322222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000481 433 LNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTV-IYWMSP 511 (1467)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~~~~~-~~~~~~ 511 (1467)
+...+.+..++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++..++..+...+.......... ......
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (544)
T TIGR01842 157 LALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRI 236 (544)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777778888999999999999999999999999999998888777666655443332222222211 111122
Q ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCC
Q 000481 512 TIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKS 591 (1467)
Q Consensus 512 ~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~ 591 (1467)
+...++.++|.+++.++.+|+|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.++..++. ...+..
T Consensus 237 ~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~ 313 (544)
T TIGR01842 237 VLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLPEP 313 (544)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCCCC
Confidence 22233344555566668999999999999999999999999999999999999999999999765432211 111122
Q ss_pred CCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
.+.|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 314 ~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 314 EGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred CCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 3569999999999743 35799999999999999999999999999999999999999999999987
Q ss_pred eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcC
Q 000481 659 SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~ 737 (1467)
.++||||+|++|++|++|||.++.+ .+++++.++++.++++++++.+|+|++|.+|++|.+||||||||++||||++++
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred heEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 4999999999999999999997654 788999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHh
Q 000481 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
|+++|||||||+||+++++.+.+.+.....+++|+|++|||++.+..||+|++|++|++++.|+|+|+++
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999987655433346899999999999998999999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-66 Score=651.84 Aligned_cols=438 Identities=22% Similarity=0.361 Sum_probs=338.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCC----------CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHH
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKP----------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~----------~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 724 (1467)
++||+|++.++. .|++||+.++.. .+. ++..++++.+++.+ ....+..+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-----------DLDEKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHHH
Confidence 899999987765 599999988632 011 12233344333321 1235567999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChH
Q 000481 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 803 (1467)
||||+||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999887655544568999999999999875 8999999999998877654
Q ss_pred HHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCc
Q 000481 804 ELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGD 883 (1467)
Q Consensus 804 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~ 883 (1467)
++... +..+.
T Consensus 231 ~~~~~-----~~~~~----------------------------------------------------------------- 240 (510)
T PRK09700 231 DVSND-----DIVRL----------------------------------------------------------------- 240 (510)
T ss_pred hCCHH-----HHHHH-----------------------------------------------------------------
Confidence 42100 00000
Q ss_pred ccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 884 VGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLG 963 (1467)
Q Consensus 884 v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~ 963 (1467)
+.
T Consensus 241 --------~~---------------------------------------------------------------------- 242 (510)
T PRK09700 241 --------MV---------------------------------------------------------------------- 242 (510)
T ss_pred --------hc----------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000481 964 LKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIF 1043 (1467)
Q Consensus 964 ~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 1043 (1467)
|+ +
T Consensus 243 ----------------------------~~-------~------------------------------------------ 245 (510)
T PRK09700 243 ----------------------------GR-------E------------------------------------------ 245 (510)
T ss_pred ----------------------------CC-------C------------------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1044 AMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLIL 1123 (1467)
Q Consensus 1044 ~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~ 1123 (1467)
T Consensus 246 -------------------------------------------------------------------------------- 245 (510)
T PRK09700 246 -------------------------------------------------------------------------------- 245 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCC
Q 000481 1124 RVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVED 1203 (1467)
Q Consensus 1124 rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~ 1203 (1467)
.. .+ +....+...
T Consensus 246 ------------------------~~-----------------------------------~~---~~~~~~~~~----- 258 (510)
T PRK09700 246 ------------------------LQ-----------------------------------NR---FNAMKENVS----- 258 (510)
T ss_pred ------------------------cc-----------------------------------cc---ccccccccc-----
Confidence 00 00 000000000
Q ss_pred CCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC
Q 000481 1204 KRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS 1283 (1467)
Q Consensus 1204 ~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~ 1283 (1467)
++ +.+..|+++|++++|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 259 --~~---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~ 329 (510)
T PRK09700 259 --NL---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISP 329 (510)
T ss_pred --cC---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCC
Confidence 00 0112599999999773 28999999999999999999999999999999999999999999999999976
Q ss_pred CCH-HHHhhccEEeccCC---ccccc-chHHhcCCCCC------------CC----HHHHHHHHHHcCCchHHhhCCCCc
Q 000481 1284 MGL-KDLRVKLSIIPQEP---TLFRG-SVRTNLDPLGL------------YS----DDEIWKALEKCQLKTTISSLPNKL 1342 (1467)
Q Consensus 1284 i~l-~~LR~~i~iIpQdp---~LF~g-TIR~NLdp~~~------------~s----d~ei~~aL~~~~l~~~i~~lp~gL 1342 (1467)
.+. ..+|++++|+||++ .+|.+ |+++|+..... .+ ++++.++++..++.. +..
T Consensus 330 ~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~ 403 (510)
T PRK09700 330 RSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC------HSV 403 (510)
T ss_pred CCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC------CCc
Confidence 543 45778999999984 57765 99999853110 11 123556677766531 123
Q ss_pred ccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEE
Q 000481 1343 DSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMV 1420 (1467)
Q Consensus 1343 dt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrI 1420 (1467)
+.++ ..||||||||++|||||+++|+||||||||++||..+.+.+.+.|++.. ++.|||+|+|+++.+.. ||||
T Consensus 404 ~~~~----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i 479 (510)
T PRK09700 404 NQNI----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRI 479 (510)
T ss_pred cCcc----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEE
Confidence 3444 3599999999999999999999999999999999999999999998753 47899999999998865 9999
Q ss_pred EEEeCCEEEEecChhH
Q 000481 1421 MVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1421 lVl~~G~ivE~g~p~~ 1436 (1467)
++|++|++++.+++.+
T Consensus 480 ~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 480 AVFCEGRLTQILTNRD 495 (510)
T ss_pred EEEECCEEEEEecCcc
Confidence 9999999999887634
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-66 Score=649.55 Aligned_cols=438 Identities=25% Similarity=0.395 Sum_probs=342.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCC--CCCCcEEEEc---------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLY--------------- 657 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~--~~~~G~i~~~--------------- 657 (1467)
|+++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 478999999953 46999999999999999999999999999999999996 7999999875
Q ss_pred --------C-----------------------eEEEEccC-CcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhc
Q 000481 658 --------G-----------------------SIAYVSQT-SWIQS-GSIRDNILYGKP---MD----KARYDKAIKACA 697 (1467)
Q Consensus 658 --------g-----------------------~i~yv~Q~-~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~ 697 (1467)
| .++|++|+ +.++. .|++||+.++.. .+ .+++.++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1 28999997 55554 699999987521 22 234555666666
Q ss_pred chHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEc
Q 000481 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVT 776 (1467)
Q Consensus 698 l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvt 776 (1467)
+.+..+ ....+|||||||||+||||++.+|+++||||||++||+++.+++.+.+.+... .|+|+|+||
T Consensus 158 l~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 654332 45678999999999999999999999999999999999999998765554433 489999999
Q ss_pred cCcchhhc-CCEEEEEeCCeEeEecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCC
Q 000481 777 HQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIY 855 (1467)
Q Consensus 777 H~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 855 (1467)
|+++.+.. ||+|++|++|+++..|+++++...
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----------------------------------------------- 259 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV----------------------------------------------- 259 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH-----------------------------------------------
Confidence 99999875 899999999999876654432100
Q ss_pred CCCCCCcccccccccCCcchHHHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchh
Q 000481 856 PRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSG 935 (1467)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~ 935 (1467)
|.. .
T Consensus 260 ------------------------------------~~~-~--------------------------------------- 263 (520)
T TIGR03269 260 ------------------------------------FME-G--------------------------------------- 263 (520)
T ss_pred ------------------------------------HHh-h---------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHH
Q 000481 936 ILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVF 1015 (1467)
Q Consensus 936 ~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~ 1015 (1467)
T Consensus 264 -------------------------------------------------------------------------------- 263 (520)
T TIGR03269 264 -------------------------------------------------------------------------------- 263 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHH
Q 000481 1016 VAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDR 1095 (1467)
Q Consensus 1016 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~ 1095 (1467)
T Consensus 264 -------------------------------------------------------------------------------- 263 (520)
T TIGR03269 264 -------------------------------------------------------------------------------- 263 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1096 FFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYC 1175 (1467)
Q Consensus 1096 f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~ 1175 (1467)
+ .
T Consensus 264 ------------------------~------------------------~------------------------------ 265 (520)
T TIGR03269 264 ------------------------V------------------------S------------------------------ 265 (520)
T ss_pred ------------------------c------------------------h------------------------------
Confidence 0 0
Q ss_pred HHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCC---CCCcceeceeEEeeCCcEEEEEcCC
Q 000481 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRP---NAPLVLKGITCTFSEGTRVGVVGRT 1252 (1467)
Q Consensus 1176 ~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~---~~~~vLk~is~~I~~GekVgIVGrT 1252 (1467)
++. . +... ++ ...-++++|++++|.. +..++|+|+||+|++||++||+|+|
T Consensus 266 ----------~~~---~-~~~~--------~~----~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~N 319 (520)
T TIGR03269 266 ----------EVE---K-ECEV--------EV----GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTS 319 (520)
T ss_pred ----------hhc---c-cccc--------CC----CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCC
Confidence 000 0 0000 00 0125999999999952 2346999999999999999999999
Q ss_pred CCcHHHHHHHHhcccCCCcceEEEC-Ce---eCCCCC---HHHHhhccEEeccCCccccc-chHHhcCC-CC-CC----C
Q 000481 1253 GSGKTTLISALFRLVEPAGGSILID-GV---DICSMG---LKDLRVKLSIIPQEPTLFRG-SVRTNLDP-LG-LY----S 1318 (1467)
Q Consensus 1253 GsGKSTL~~~L~rl~~~~~G~I~ID-G~---dI~~i~---l~~LR~~i~iIpQdp~LF~g-TIR~NLdp-~~-~~----s 1318 (1467)
|||||||+++|.|+++|++|+|.++ |. +++..+ ...+|++++|+||++.+|.. |+++|+.. +. .. .
T Consensus 320 GsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~ 399 (520)
T TIGR03269 320 GAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA 399 (520)
T ss_pred CCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999996 64 344433 23567889999999988875 99999941 11 11 1
Q ss_pred HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000481 1319 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQE 1398 (1467)
Q Consensus 1319 d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~ 1398 (1467)
++++.++++..++.+.-. ++-++.++ ..||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.
T Consensus 400 ~~~~~~~l~~~~l~~~~~--~~~~~~~~----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l 473 (520)
T TIGR03269 400 RMKAVITLKMVGFDEEKA--EEILDKYP----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKA 473 (520)
T ss_pred HHHHHHHHHhCCCCCccc--hhhhhCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 235667788887753100 00123333 469999999999999999999999999999999999999999999876
Q ss_pred c--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1399 F--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1399 ~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
. .+.|||+|+|+++.+.. ||||++|++|++++.|+|+++.+
T Consensus 474 ~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 474 REEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 4 37899999999999976 99999999999999999998764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=688.44 Aligned_cols=248 Identities=20% Similarity=0.294 Sum_probs=201.4
Q ss_pred HHHHHHHhhHHHHHHHhh--cCCCCCCCCcCCCCCCCCCCCcc--eEEEEEEEEEeC--CCCCcceeceeEEeeCCcEEE
Q 000481 1174 YCYLANYIISVERIKQFM--HIPPEPPAIVEDKRPPSSWPFKG--RIELRQLKIRYR--PNAPLVLKGITCTFSEGTRVG 1247 (1467)
Q Consensus 1174 ~~~le~~~~sveRi~~~~--~~~~e~~~~~~~~~~~~~wp~~g--~I~f~nvs~~Y~--~~~~~vLk~is~~I~~GekVg 1247 (1467)
..+.|+.+.++||..++. +.+.|.+.......+|. ..| .++++|++++|+ ++.+.+|+|||++|+|||++|
T Consensus 717 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~a 793 (1394)
T TIGR00956 717 GETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEK---ESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTA 793 (1394)
T ss_pred ccccccccccccccccCCCCccccccccccccccccc---cCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEE
Confidence 345677788999998763 34444432222211221 134 479999999985 334579999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhcccC---CCcceEEECCeeCCCCCHHHHhhccEEeccCCcc-cccchHHhcCCC------CCC
Q 000481 1248 VVGRTGSGKTTLISALFRLVE---PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL-FRGSVRTNLDPL------GLY 1317 (1467)
Q Consensus 1248 IVGrTGsGKSTL~~~L~rl~~---~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~L-F~gTIR~NLdp~------~~~ 1317 (1467)
|+||||||||||+++|.|+.+ |++|+|.+||.++. .++|++++||||++.+ +..|+||||+.. ...
T Consensus 794 I~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~ 869 (1394)
T TIGR00956 794 LMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV 869 (1394)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC
Confidence 999999999999999999997 78899999999985 3578999999998764 567999999621 123
Q ss_pred CHHH----HHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCC-EEEEeCCCCCCCHHHHHHHH
Q 000481 1318 SDDE----IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR-ILVLDEANASIDSATDAILQ 1392 (1467)
Q Consensus 1318 sd~e----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~-ILiLDEaTs~lD~~Te~~Iq 1392 (1467)
++++ +.++++..++.+ ..|+.+++.|.+||||||||++|||||+++|+ ||+||||||+||..+...|+
T Consensus 870 ~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~ 942 (1394)
T TIGR00956 870 SKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC 942 (1394)
T ss_pred CHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHH
Confidence 4433 567777777654 36889998888999999999999999999997 99999999999999999999
Q ss_pred HHHHHH-cCCcEEEEEccCchhh--cccCEEEEEeCC-EEEEecChh
Q 000481 1393 RIIRQE-FSNCTVITVAHRVPTV--IDSDMVMVLSYG-KLLEYDEPS 1435 (1467)
Q Consensus 1393 ~~i~~~-~~~~TvI~IAHRl~ti--~~~DrIlVl~~G-~ivE~g~p~ 1435 (1467)
+.|++. .+|+|||+++|++++. ..+|+|++|++| +++++|++.
T Consensus 943 ~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 943 KLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 999986 4689999999999974 469999999997 999999974
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-65 Score=641.43 Aligned_cols=474 Identities=18% Similarity=0.313 Sum_probs=339.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcCCC-
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS- 671 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l~~- 671 (1467)
|+++|++++|+. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|+|++|++.++.
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 689999999963 4699999999999999999999999999999999999999999999976 6999999987654
Q ss_pred CCHHHHHhcCCC-C------------------C--------------------HHHHHHHHHHhcchHHHhcCCCCCCcc
Q 000481 672 GSIRDNILYGKP-M------------------D--------------------KARYDKAIKACALDKDINNFDHGDLTE 712 (1467)
Q Consensus 672 ~ti~eNi~~g~~-~------------------~--------------------~~~~~~~~~~~~l~~~~~~l~~g~~t~ 712 (1467)
.|++||+.++.. . + +++..++++..++.+..
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---------- 148 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ---------- 148 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH----------
Confidence 599999987531 0 0 01122222222221111
Q ss_pred ccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEE
Q 000481 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVL 791 (1467)
Q Consensus 713 ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l 791 (1467)
-.....+|||||||||+||||++.+|+++||||||++||+++.+++.+.+ . ..++|+|+|||+++.+.. ||+|++|
T Consensus 149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l-~--~~~~tiiivsHd~~~~~~~~d~i~~l 225 (530)
T PRK15064 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVL-N--ERNSTMIIISHDRHFLNSVCTHMADL 225 (530)
T ss_pred hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHH-H--hCCCeEEEEeCCHHHHHhhcceEEEE
Confidence 12346789999999999999999999999999999999999999887644 3 247899999999999876 8999999
Q ss_pred eCCeEe-EecChHHHHhcCchH-HHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccc
Q 000481 792 EGGQIT-QSGNYQELLLAGTAF-EQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKG 869 (1467)
Q Consensus 792 ~~G~i~-~~G~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1467)
++|+++ +.|+++++++..... +...++.. .
T Consensus 226 ~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~------------------~------------------------------ 257 (530)
T PRK15064 226 DYGELRVYPGNYDEYMTAATQARERLLADNA------------------K------------------------------ 257 (530)
T ss_pred eCCEEEEecCCHHHHHHHHHHHHHHHHHHHH------------------H------------------------------
Confidence 999994 789988875421100 00000000 0
Q ss_pred cCCcchHHHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHH
Q 000481 870 LTQLTEDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASA 949 (1467)
Q Consensus 870 ~~~~~~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~ 949 (1467)
.+++.+. +. .|.
T Consensus 258 ----~~~~~~~------------~~--------------------------~~~-------------------------- 269 (530)
T PRK15064 258 ----KKAQIAE------------LQ--------------------------SFV-------------------------- 269 (530)
T ss_pred ----HHHHHHH------------HH--------------------------HHH--------------------------
Confidence 0000000 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 000481 950 VFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGI 1029 (1467)
Q Consensus 950 ~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~ 1029 (1467)
T Consensus 270 -------------------------------------------------------------------------------- 269 (530)
T PRK15064 270 -------------------------------------------------------------------------------- 269 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHH
Q 000481 1030 MTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDAS 1109 (1467)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~ 1109 (1467)
.+... ++. + . ...
T Consensus 270 ---------------------------------~~~~~--~~~---------------~-----------~-----~~~- 282 (530)
T PRK15064 270 ---------------------------------SRFSA--NAS---------------K-----------A-----KQA- 282 (530)
T ss_pred ---------------------------------HHhhc--cch---------------h-----------h-----HHH-
Confidence 00000 000 0 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000481 1110 LFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQ 1189 (1467)
Q Consensus 1110 ~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~ 1189 (1467)
+......++..
T Consensus 283 --------------------------------------------------------------------~~~~~~~~~~~- 293 (530)
T PRK15064 283 --------------------------------------------------------------------TSRAKQIDKIK- 293 (530)
T ss_pred --------------------------------------------------------------------HHHHHHHhhcc-
Confidence 00000000000
Q ss_pred hhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC
Q 000481 1190 FMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP 1269 (1467)
Q Consensus 1190 ~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~ 1269 (1467)
....++..........+...-+.+..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p 371 (530)
T PRK15064 294 LEEVKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP 371 (530)
T ss_pred ccccCCccccCceeeCCCCCCCCCceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 00000000000000000000011236999999999953 3599999999999999999999999999999999999999
Q ss_pred CcceEEECCeeCCCCCHHHHhhccEEeccCCc--ccc-cchHHhcCCCC--CCCHHHHHHHHHHcCCc-hHHhhCCCCcc
Q 000481 1270 AGGSILIDGVDICSMGLKDLRVKLSIIPQEPT--LFR-GSVRTNLDPLG--LYSDDEIWKALEKCQLK-TTISSLPNKLD 1343 (1467)
Q Consensus 1270 ~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~--LF~-gTIR~NLdp~~--~~sd~ei~~aL~~~~l~-~~i~~lp~gLd 1343 (1467)
++|+|.++| +.+++|+||++. ++. .|+++|+..+. ...++++.++|+..++. +.. +
T Consensus 372 ~~G~i~~~~-----------~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~ 433 (530)
T PRK15064 372 DSGTVKWSE-----------NANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI-------K 433 (530)
T ss_pred CCeEEEECC-----------ceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh-------c
Confidence 999999998 368999999984 443 59999985321 22456688889998874 332 2
Q ss_pred cccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEE
Q 000481 1344 SSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMV 1422 (1467)
Q Consensus 1344 t~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlV 1422 (1467)
.+ ..+||||||||++||||++++|+||||||||++||+.+...+.+.|++. +.|||+|||+++.+.. ||||++
T Consensus 434 ~~----~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~ 507 (530)
T PRK15064 434 KS----VKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIE 507 (530)
T ss_pred Cc----ccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEE
Confidence 22 3469999999999999999999999999999999999999999999875 4699999999999876 999999
Q ss_pred EeCCEEE-EecChhHHhccCC
Q 000481 1423 LSYGKLL-EYDEPSKLMETNS 1442 (1467)
Q Consensus 1423 l~~G~iv-E~g~p~~Ll~~~~ 1442 (1467)
|++|+++ +.|+++++++++|
T Consensus 508 l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 508 ITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred EECCeEEEcCCCHHHHHHHhC
Confidence 9999998 7799999887554
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=641.71 Aligned_cols=446 Identities=21% Similarity=0.368 Sum_probs=344.8
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCCCC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKPMD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
++|++|++.++. .|++||+.++.... +++..++++..++.... ..+..+|||||||||+||||++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL-----------DSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc-----------cCChhhCCHHHHHHHHHHHHHH
Confidence 899999987765 59999999875322 23455555555553222 2456789999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcCchHHH
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGTAFEQ 814 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~ 814 (1467)
.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++... +
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-----~ 231 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD-----D 231 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH-----H
Confidence 9999999999999999999999987655544568999999999999865 999999999999998887664321 0
Q ss_pred HHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCcccHHHHHHHHH
Q 000481 815 LVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFMDYLN 894 (1467)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~ 894 (1467)
..+..... . . ..
T Consensus 232 ~~~~~~~~----------------~-------~--------------~~------------------------------- 243 (510)
T PRK15439 232 IIQAITPA----------------A-------R--------------EK------------------------------- 243 (510)
T ss_pred HHHHHhCc----------------c-------c--------------cc-------------------------------
Confidence 00000000 0 0 00
Q ss_pred hhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 895 VSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGF 974 (1467)
Q Consensus 895 ~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l 974 (1467)
T Consensus 244 -------------------------------------------------------------------------------- 243 (510)
T PRK15439 244 -------------------------------------------------------------------------------- 243 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000481 975 TNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRY 1054 (1467)
Q Consensus 975 ~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1467)
T Consensus 244 -------------------------------------------------------------------------------- 243 (510)
T PRK15439 244 -------------------------------------------------------------------------------- 243 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1055 YIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLF 1134 (1467)
Q Consensus 1055 y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~ 1134 (1467)
+.. .
T Consensus 244 ---------~~~--~----------------------------------------------------------------- 247 (510)
T PRK15439 244 ---------SLS--A----------------------------------------------------------------- 247 (510)
T ss_pred ---------ccc--c-----------------------------------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcc
Q 000481 1135 TAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKG 1214 (1467)
Q Consensus 1135 ~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g 1214 (1467)
..+. . ...|...+ . ++ +.+-
T Consensus 248 -------------------------------------------------~~~~-~-~~~~~~~~-----~-~~---~~~~ 267 (510)
T PRK15439 248 -------------------------------------------------SQKL-W-LELPGNRR-----Q-QA---AGAP 267 (510)
T ss_pred -------------------------------------------------cccc-c-cccccccc-----c-cC---CCCc
Confidence 0000 0 00000000 0 00 0111
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH-Hhhcc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~-LR~~i 1293 (1467)
-|+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+... .|.++
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 489999983 1699999999999999999999999999999999999999999999999998877654 46789
Q ss_pred EEeccCC---ccccc-chHHhcCCC-----CC--CC---HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1294 SIIPQEP---TLFRG-SVRTNLDPL-----GL--YS---DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1294 ~iIpQdp---~LF~g-TIR~NLdp~-----~~--~s---d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
+|+||+| .+|.. |+++|+..+ .. .. ++++.++|+..++.. +..+.++ ..|||||||
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSgG~kq 410 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF------NHAEQAA----RTLSGGNQQ 410 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC------CCccCcc----ccCCcHHHH
Confidence 9999996 36654 999998421 10 01 123556666666531 1233333 469999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
|++||||++.+|+||||||||++||..+.+.+.+.|++.. +++|+|+|+|+++.+.+ ||||++|++|+++..|+++++
T Consensus 411 rl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999998753 47899999999999976 999999999999999999877
Q ss_pred hc
Q 000481 1438 ME 1439 (1467)
Q Consensus 1438 l~ 1439 (1467)
.+
T Consensus 491 ~~ 492 (510)
T PRK15439 491 NV 492 (510)
T ss_pred CH
Confidence 54
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-63 Score=625.89 Aligned_cols=511 Identities=21% Similarity=0.265 Sum_probs=392.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 276 LKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1467)
Q Consensus 276 ~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~ 355 (1467)
|+.++...++.++..++..+.|++++.++|....+.......+.+++++++..++..++.....+...+++.++...++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888889999999999999999976311112222223333444444555555555666777888899999999
Q ss_pred HHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 356 AVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLN 434 (1467)
Q Consensus 356 ~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~~~~~ 434 (1467)
.+|+|.++++...+++.++|+++|++++|++.++++.. .+..+....+..++++++++..-.+.+++.++.+++...+.
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987653 34444555454444444444332222222222222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 000481 435 VPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEA-QLRKAYGTVIYWMSPTI 513 (1467)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~-~~~~~~~~~~~~~~~~~ 513 (1467)
..+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.++.++..++..+...+. ...............+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLS 241 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777888888999999999999999999999999888777665544332221111 11111111111111122
Q ss_pred HHHH-HHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCC
Q 000481 514 ISSV-IFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSD 592 (1467)
Q Consensus 514 ~~~~-~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~ 592 (1467)
..++ .+.++... ++.+|.+.+++++.++..+..|+..+...+..+.+++++++|+.++++.++.+.+.. .. .....
T Consensus 242 ~~~~~~~~~~~~~-~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~-~~-~~~~~ 318 (529)
T TIGR02857 242 VALVAVYIGFRLL-AGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA-PV-TAAPA 318 (529)
T ss_pred HHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-CC-CCCCC
Confidence 2222 23344444 578999999999999999999999999999999999999999999997543221111 11 11123
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 659 (1467)
+.|+++|++|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 319 ~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 319 PSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred CeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 479999999999754 35799999999999999999999999999999999999999999999987 3
Q ss_pred EEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCC
Q 000481 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1467)
Q Consensus 660 i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~ 738 (1467)
++||+|+|++|++||+|||.+|.+ .++++++++++.++++++++.+|+|++|.+||+|.+||||||||++||||++++|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999865 6788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEE
Q 000481 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1467)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l 791 (1467)
+++|||||||+||+++++.+++.+ ....+++|+|+||||++.++.||+|++|
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEAL-RALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHH-HHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999997655 4455789999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-66 Score=644.19 Aligned_cols=433 Identities=20% Similarity=0.343 Sum_probs=336.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 4699999999999999999999999999999999999999999999876 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCC-------CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKP-------MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~-------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
++|++|++.++. .|++||+.++.. .+.+ +..++++.+++.+. ......+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-----------SDKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCCHHHHHH
Confidence 899999987654 599999998743 1222 22333333333211 124567899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHH
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 999999999999999999999999999999876554444468899999999999875 8999999999998765422210
Q ss_pred hcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCcccH
Q 000481 807 LAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGW 886 (1467)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~ 886 (1467)
. ++
T Consensus 230 ~--------------------------------------------------------------------~~--------- 232 (501)
T PRK10762 230 E--------------------------------------------------------------------DS--------- 232 (501)
T ss_pred H--------------------------------------------------------------------HH---------
Confidence 0 00
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 887 KPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKA 966 (1467)
Q Consensus 887 ~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~ 966 (1467)
.....
T Consensus 233 -----~~~~~---------------------------------------------------------------------- 237 (501)
T PRK10762 233 -----LIEMM---------------------------------------------------------------------- 237 (501)
T ss_pred -----HHHHh----------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000481 967 SKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMV 1046 (1467)
Q Consensus 967 s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 1046 (1467)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T PRK10762 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1047 AVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVE 1126 (1467)
Q Consensus 1047 ~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ 1126 (1467)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T PRK10762 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCC
Q 000481 1127 ALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRP 1206 (1467)
Q Consensus 1127 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~ 1206 (1467)
.+. +.. ..++..+ .+
T Consensus 238 ------------------~~~--------------------------------------~~~---~~~~~~~------~~ 252 (501)
T PRK10762 238 ------------------VGR--------------------------------------KLE---DQYPRLD------KA 252 (501)
T ss_pred ------------------cCC--------------------------------------Ccc---ccccccc------cC
Confidence 000 000 0000000 00
Q ss_pred CCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH
Q 000481 1207 PSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL 1286 (1467)
Q Consensus 1207 ~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l 1286 (1467)
|..-.|+++|+++ .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.
T Consensus 253 ----~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 253 ----PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred ----CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence 0112589999984 27999999999999999999999999999999999999999999999999987665
Q ss_pred -HHHhhccEEeccCC---cccc-cchHHhcCCC-----CC----CC----HHHHHHHHHHcCCchHHhhCCCCccccccc
Q 000481 1287 -KDLRVKLSIIPQEP---TLFR-GSVRTNLDPL-----GL----YS----DDEIWKALEKCQLKTTISSLPNKLDSSVSD 1348 (1467)
Q Consensus 1287 -~~LR~~i~iIpQdp---~LF~-gTIR~NLdp~-----~~----~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e 1348 (1467)
+.+|++++|+||+| .+|. -|+++|+... .. .+ ++++.++++.+++.+ +..+.+
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~--- 392 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT------PSMEQA--- 392 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC------CCccCc---
Confidence 34678899999997 3554 5999999521 00 11 234566777766531 112333
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCC
Q 000481 1349 EGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYG 1426 (1467)
Q Consensus 1349 ~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G 1426 (1467)
...||||||||++||||++++|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|
T Consensus 393 -~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 471 (501)
T PRK10762 393 -IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEG 471 (501)
T ss_pred -hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECC
Confidence 34699999999999999999999999999999999999999999998764 47899999999999876 9999999999
Q ss_pred EEEEecChhHHh
Q 000481 1427 KLLEYDEPSKLM 1438 (1467)
Q Consensus 1427 ~ivE~g~p~~Ll 1438 (1467)
++++.|+++++.
T Consensus 472 ~i~~~~~~~~~~ 483 (501)
T PRK10762 472 RISGEFTREQAT 483 (501)
T ss_pred EEEEEeccccCC
Confidence 999999988753
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-65 Score=639.94 Aligned_cols=435 Identities=21% Similarity=0.335 Sum_probs=335.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 4699999999999999999999999999999999999999999998865 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCC------CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKP------MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~------~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
|+|++|++.++. .|++||+.++.. .+. ++..++++.+++... ...+..+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHHHHH
Confidence 899999988765 599999998631 122 233344444443211 2345678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
+||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|+|||+++.+.. ||+|++|++|+++..++..+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~--- 226 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMA--- 226 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccc---
Confidence 99999999999999999999999999999987655544468999999999999865 89999999999975432000
Q ss_pred cCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCcccHH
Q 000481 808 AGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWK 887 (1467)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~ 887 (1467)
. . ..++
T Consensus 227 -------------------------------~---------------------------------~-~~~~--------- 232 (501)
T PRK11288 227 -------------------------------Q---------------------------------V-DRDQ--------- 232 (501)
T ss_pred -------------------------------c---------------------------------C-CHHH---------
Confidence 0 0 0000
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 888 PFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKAS 967 (1467)
Q Consensus 888 ~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s 967 (1467)
+...
T Consensus 233 ----~~~~------------------------------------------------------------------------ 236 (501)
T PRK11288 233 ----LVQA------------------------------------------------------------------------ 236 (501)
T ss_pred ----HHHH------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000481 968 KAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVA 1047 (1467)
Q Consensus 968 ~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1467)
+
T Consensus 237 ----------~--------------------------------------------------------------------- 237 (501)
T PRK11288 237 ----------M--------------------------------------------------------------------- 237 (501)
T ss_pred ----------h---------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1048 VRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEA 1127 (1467)
Q Consensus 1048 ~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~ 1127 (1467)
..
T Consensus 238 ------------------~~------------------------------------------------------------ 239 (501)
T PRK11288 238 ------------------VG------------------------------------------------------------ 239 (501)
T ss_pred ------------------cC------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCC
Q 000481 1128 LQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPP 1207 (1467)
Q Consensus 1128 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~ 1207 (1467)
... ++. .+.++. +
T Consensus 240 ------------------~~~------------------------------------~~~-----~~~~~~-------~- 252 (501)
T PRK11288 240 ------------------REI------------------------------------GDI-----YGYRPR-------P- 252 (501)
T ss_pred ------------------CCc------------------------------------ccc-----cccccc-------C-
Confidence 000 000 000000 0
Q ss_pred CCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC-H
Q 000481 1208 SSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG-L 1286 (1467)
Q Consensus 1208 ~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~-l 1286 (1467)
+....++++|++++ .+++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 253 ---~~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~ 323 (501)
T PRK11288 253 ---LGEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPR 323 (501)
T ss_pred ---CCCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHH
Confidence 01125899999842 3899999999999999999999999999999999999999999999999987543 3
Q ss_pred HHHhhccEEeccCCc---ccc-cchHHhcCCCC--C-------CC----HHHHHHHHHHcCCchHHhhCCCCcccccccC
Q 000481 1287 KDLRVKLSIIPQEPT---LFR-GSVRTNLDPLG--L-------YS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDE 1349 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~---LF~-gTIR~NLdp~~--~-------~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~ 1349 (1467)
+.+|++++++||+|. +|. .|+.+|+.... . .. ++++.+.++..++.+ +..++++
T Consensus 324 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~--- 394 (501)
T PRK11288 324 DAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT------PSREQLI--- 394 (501)
T ss_pred HHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc------CCccCcc---
Confidence 456789999999983 554 69999985210 0 01 134566777766521 1133343
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCE
Q 000481 1350 GENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGK 1427 (1467)
Q Consensus 1350 G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ 1427 (1467)
.+||||||||++||||++.+|++|||||||++||..+.+.+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|+
T Consensus 395 -~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~ 473 (501)
T PRK11288 395 -MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473 (501)
T ss_pred -ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCE
Confidence 4699999999999999999999999999999999999999999997753 47899999999999965 99999999999
Q ss_pred EEEecChhHHh
Q 000481 1428 LLEYDEPSKLM 1438 (1467)
Q Consensus 1428 ivE~g~p~~Ll 1438 (1467)
+++.|++++..
T Consensus 474 i~~~~~~~~~~ 484 (501)
T PRK11288 474 IAGELAREQAT 484 (501)
T ss_pred EEEEEccccCC
Confidence 99999987654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=640.44 Aligned_cols=438 Identities=22% Similarity=0.360 Sum_probs=334.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC--CCcEEEEcC--------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK--ISGTVNLYG-------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g-------------- 658 (1467)
++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999953 4699999999999999999999999999999999999987 799999876
Q ss_pred eEEEEccCCcCCC-CCHHHHHhcCCCC-------CHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 SIAYVSQTSWIQS-GSIRDNILYGKPM-------DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~-~ti~eNi~~g~~~-------~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.++||+|++.++. .|++||+.++... +.+ +.+++++.+++.... + .....+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~----~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------V----TRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------c----cCchhhCCHHHHH
Confidence 3899999987665 5999999986431 111 223333333322110 0 1345689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
||+||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|+|||+++++.. ||+|++|++|+++..|+.++.
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999987655444568999999999999876 899999999999865421100
Q ss_pred HhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCccc
Q 000481 806 LLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVG 885 (1467)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~ 885 (1467)
. . +.
T Consensus 229 ~--------------------------------------------------------------------~-~~------- 232 (500)
T TIGR02633 229 S--------------------------------------------------------------------E-DD------- 232 (500)
T ss_pred C--------------------------------------------------------------------H-HH-------
Confidence 0 0 00
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLK 965 (1467)
Q Consensus 886 ~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~ 965 (1467)
...
T Consensus 233 ------~~~----------------------------------------------------------------------- 235 (500)
T TIGR02633 233 ------IIT----------------------------------------------------------------------- 235 (500)
T ss_pred ------HHH-----------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000481 966 ASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAM 1045 (1467)
Q Consensus 966 ~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1045 (1467)
T Consensus 236 -------------------------------------------------------------------------------- 235 (500)
T TIGR02633 236 -------------------------------------------------------------------------------- 235 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1046 VAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRV 1125 (1467)
Q Consensus 1046 ~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl 1125 (1467)
... |
T Consensus 236 ------------------~~~----------------~------------------------------------------ 239 (500)
T TIGR02633 236 ------------------MMV----------------G------------------------------------------ 239 (500)
T ss_pred ------------------HHh----------------C------------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCC
Q 000481 1126 EALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKR 1205 (1467)
Q Consensus 1126 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~ 1205 (1467)
. ... + ..+.++ .
T Consensus 240 -------------------~-~~~------------------------------------~-----~~~~~~-------~ 251 (500)
T TIGR02633 240 -------------------R-EIT------------------------------------S-----LYPHEP-------H 251 (500)
T ss_pred -------------------c-ccc------------------------------------c-----cccccc-------c
Confidence 0 000 0 000000 0
Q ss_pred CCCCCCCcceEEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-CcceEEECCeeCCC
Q 000481 1206 PPSSWPFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-AGGSILIDGVDICS 1283 (1467)
Q Consensus 1206 ~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-~~G~I~IDG~dI~~ 1283 (1467)
++ .+--|+++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++..
T Consensus 252 ~~----~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~ 327 (500)
T TIGR02633 252 EI----GDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDI 327 (500)
T ss_pred CC----CCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCC
Confidence 00 01149999999999432 23599999999999999999999999999999999999995 89999999999975
Q ss_pred CCH-HHHhhccEEeccCC---cccc-cchHHhcCCC-----CC---CC----HHHHHHHHHHcCCchHHhhCCCCccccc
Q 000481 1284 MGL-KDLRVKLSIIPQEP---TLFR-GSVRTNLDPL-----GL---YS----DDEIWKALEKCQLKTTISSLPNKLDSSV 1346 (1467)
Q Consensus 1284 i~l-~~LR~~i~iIpQdp---~LF~-gTIR~NLdp~-----~~---~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v 1346 (1467)
.+. ..+|++++++||++ .+|. .|+++|+... .. .. ++++.+++++.++.+. -.+.++
T Consensus 328 ~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~ 401 (500)
T TIGR02633 328 RNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA------SPFLPI 401 (500)
T ss_pred CCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC------CccCcc
Confidence 443 56788999999997 3666 4999999631 11 11 2345667777765311 123333
Q ss_pred ccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEe
Q 000481 1347 SDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLS 1424 (1467)
Q Consensus 1347 ~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~ 1424 (1467)
..||||||||++||||++++|++|||||||++||..+.+.+.+.|++.. ++.|||+|+|+++.+.+ ||+|++|+
T Consensus 402 ----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~ 477 (500)
T TIGR02633 402 ----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIG 477 (500)
T ss_pred ----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 4699999999999999999999999999999999999999998888753 47899999999999976 99999999
Q ss_pred CCEEEEecChhH
Q 000481 1425 YGKLLEYDEPSK 1436 (1467)
Q Consensus 1425 ~G~ivE~g~p~~ 1436 (1467)
+|+++..++..+
T Consensus 478 ~G~i~~~~~~~~ 489 (500)
T TIGR02633 478 EGKLKGDFVNHA 489 (500)
T ss_pred CCEEEEEEcccc
Confidence 999998776544
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-63 Score=664.26 Aligned_cols=216 Identities=16% Similarity=0.213 Sum_probs=187.6
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhc
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~ 1292 (1467)
..-|+++|++++|+....++|+||||+|++||.+||+|++|||||||+++|.|+.+|++|+|.++|.++.+ +.++.|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34699999999997533569999999999999999999999999999999999999999999999999975 46678899
Q ss_pred cEEeccCCccccc-chHHhcCCCC---CCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1293 LSIIPQEPTLFRG-SVRTNLDPLG---LYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1293 i~iIpQdp~LF~g-TIR~NLdp~~---~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
|||+||++.++.. |+||||..+. ..++ +.+.++++.+++.++....+ ..||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~-----------~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA-----------GTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999998865 9999985321 1222 23556788888876543332 35899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQE-FSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~-~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
|||+.+|+||+|||||++||+.+.+.+.+.|++. .+|+|||+++|+++.+.. ||||++|++|+++..|++++|.++
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999999875 358999999999999976 999999999999999999999763
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-63 Score=572.09 Aligned_cols=526 Identities=22% Similarity=0.278 Sum_probs=407.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000481 287 LLRTIAVVVGPLLLYAFVNYSNRGE-EN--LQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLK 363 (1467)
Q Consensus 287 l~~~~~~~~~P~ll~~~i~~~~~~~-~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~l~ 363 (1467)
+.+-.+....|++++..++...+.+ .+ .......+.+.+++.++.+++.-...+....+..++-......+|++.+.
T Consensus 40 ~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ 119 (591)
T KOG0057|consen 40 LGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMS 119 (591)
T ss_pred HhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345677889999999998774211 11 11222334445555566666655555566677777777888899999999
Q ss_pred CCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000481 364 LSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALP-GLVLFLICGLLNVPFAKIL 441 (1467)
Q Consensus 364 l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~-gl~~~~~~~~~~~~~~~~~ 441 (1467)
++...+.+.++|++.+.|..-...|.+++.. +..+....+++.+....++...|....+ .+..+............+-
T Consensus 120 ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~R 199 (591)
T KOG0057|consen 120 LDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWR 199 (591)
T ss_pred hhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHH
Confidence 9999999999999999998887777775442 4445556677777777888888875432 2222233333444456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 442 QKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIES-RREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFL 520 (1467)
Q Consensus 442 ~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~-~R~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~ 520 (1467)
.+++++..++.++-.+.+-+.|.|-..||.|+-|+...++... +++.|-..++..+-....+..--.+..+..+.+.+.
T Consensus 200 n~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l 279 (591)
T KOG0057|consen 200 NRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVL 279 (591)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999999999999999877655443 333333222211111111111111111222333444
Q ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCcEEEEeE
Q 000481 521 GCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEG 600 (1467)
Q Consensus 521 ~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~I~~~~~ 600 (1467)
+..-+.++.+|.+.+....+++.+|..|+..+...+..+.|+..=++-....+..++...+ ...+....++.|+|+|+
T Consensus 280 ~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~--~~~~i~~~~~~I~F~dV 357 (591)
T KOG0057|consen 280 GSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE--AALPIELFGGSIEFDDV 357 (591)
T ss_pred HhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh--ccCCcccCCCcEEEEee
Confidence 4433445789999999999999999999999999999999888777665443322211111 01123335567999999
Q ss_pred EEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEEEEccCC
Q 000481 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTS 667 (1467)
Q Consensus 601 sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~ 667 (1467)
+|+|.++ +++|+++||+|++||.+||+|+|||||||++++|+++++ .+|+|.++| .||||||+.
T Consensus 358 ~f~y~~k--~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~ 434 (591)
T KOG0057|consen 358 HFSYGPK--RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDS 434 (591)
T ss_pred EEEeCCC--CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcc
Confidence 9999864 579999999999999999999999999999999999999 999999998 399999999
Q ss_pred cCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000481 668 WIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1467)
Q Consensus 668 ~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep 746 (1467)
.|||+||.+||.+|++ ..++++.++++.+++++-+..+|+|++|.+||+|..|||||||||+||||+++||+|+++|||
T Consensus 435 ~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa 514 (591)
T KOG0057|consen 435 VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA 514 (591)
T ss_pred cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc
Confidence 9999999999999987 678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHHHHH
Q 000481 747 FSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1467)
Q Consensus 747 ~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~ 818 (1467)
||+||.+|++.+++.+.. ...+||+|+|.||++.+++||+|++++||++.+.|+|+|+++..+.|.+++..
T Consensus 515 TS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~ 585 (591)
T KOG0057|consen 515 TSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT 585 (591)
T ss_pred ccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcc
Confidence 999999999999976554 77899999999999999999999999999999999999999988888888754
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=631.22 Aligned_cols=432 Identities=22% Similarity=0.361 Sum_probs=330.2
Q ss_pred EEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------eEEE
Q 000481 597 IQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SIAY 662 (1467)
Q Consensus 597 ~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i~y 662 (1467)
++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3688999953 4699999999999999999999999999999999999999999999876 3899
Q ss_pred EccCCcCC-CCCHHHHHhcCCC------CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 663 VSQTSWIQ-SGSIRDNILYGKP------MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 663 v~Q~~~l~-~~ti~eNi~~g~~------~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
++|++.++ +.|++||+.++.. .+.+ +.+++++.+++. .....+..+|||||||||+||
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHHHHHH
Confidence 99998765 5699999998642 1222 222233333222 122356779999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcCc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~ 810 (1467)
||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~--- 223 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTM--- 223 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCH---
Confidence 99999999999999999999999999987655544568999999999999875 89999999999987665322100
Q ss_pred hHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCcccHHHHH
Q 000481 811 AFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFM 890 (1467)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~ 890 (1467)
++.
T Consensus 224 -----------------------------------------------------------------~~~------------ 226 (491)
T PRK10982 224 -----------------------------------------------------------------DKI------------ 226 (491)
T ss_pred -----------------------------------------------------------------HHH------------
Confidence 000
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 891 DYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAF 970 (1467)
Q Consensus 891 ~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l 970 (1467)
..
T Consensus 227 --~~---------------------------------------------------------------------------- 228 (491)
T PRK10982 227 --IA---------------------------------------------------------------------------- 228 (491)
T ss_pred --HH----------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000481 971 FSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRF 1050 (1467)
Q Consensus 971 ~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1467)
T Consensus 229 -------------------------------------------------------------------------------- 228 (491)
T PRK10982 229 -------------------------------------------------------------------------------- 228 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1051 VQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQN 1130 (1467)
Q Consensus 1051 ~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~ 1130 (1467)
+.. +
T Consensus 229 -------------~~~------------------------~--------------------------------------- 232 (491)
T PRK10982 229 -------------MMV------------------------G--------------------------------------- 232 (491)
T ss_pred -------------HHh------------------------C---------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCC
Q 000481 1131 LTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSW 1210 (1467)
Q Consensus 1131 ~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~w 1210 (1467)
. .. .+ ..+++. .+
T Consensus 233 --------------~-~~------------------------------------~~-----~~~~~~-------~~---- 245 (491)
T PRK10982 233 --------------R-SL------------------------------------TQ-----RFPDKE-------NK---- 245 (491)
T ss_pred --------------C-Cc------------------------------------cc-----cccccc-------CC----
Confidence 0 00 00 000000 00
Q ss_pred CCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH-HH
Q 000481 1211 PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK-DL 1289 (1467)
Q Consensus 1211 p~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~-~L 1289 (1467)
+.+..|+++|++++| ..+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.+++..+.. .+
T Consensus 246 ~~~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 321 (491)
T PRK10982 246 PGEVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAI 321 (491)
T ss_pred CCCcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHH
Confidence 011259999999985 2489999999999999999999999999999999999999999999999999877654 45
Q ss_pred hhccEEeccCCc---ccc-cchHHh-----cCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCC
Q 000481 1290 RVKLSIIPQEPT---LFR-GSVRTN-----LDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGEN 1352 (1467)
Q Consensus 1290 R~~i~iIpQdp~---LF~-gTIR~N-----Ldp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~n 1352 (1467)
|+.++|+||++. +|. .|+++| +... +..+ ++++.+.++..++.+ +.+|.++ .+
T Consensus 322 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~ 391 (491)
T PRK10982 322 NHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT------PGHRTQI----GS 391 (491)
T ss_pred HCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC------CCccccc----cc
Confidence 778999999963 565 366666 3211 1112 123445555555421 1133333 46
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEE
Q 000481 1353 WSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430 (1467)
Q Consensus 1353 LS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE 1430 (1467)
||||||||++||||++++|+||||||||++||..+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++.
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999997643 48999999999999975 99999999999998
Q ss_pred ecChhHH
Q 000481 1431 YDEPSKL 1437 (1467)
Q Consensus 1431 ~g~p~~L 1437 (1467)
.++++++
T Consensus 472 ~~~~~~~ 478 (491)
T PRK10982 472 IVDTKTT 478 (491)
T ss_pred EEccccC
Confidence 8877543
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=631.50 Aligned_cols=440 Identities=23% Similarity=0.329 Sum_probs=337.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3789999999963 3599999999999999999999999999999999999999999998765 27
Q ss_pred EEEccCCcC---------CCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 661 AYVSQTSWI---------QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 661 ~yv~Q~~~l---------~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+|++|++.. +..|++||+.++.. ++++.+++++..++.+..+ ....+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLD-----------RRFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhh-----------CCcccCCHHHHHHHHHH
Confidence 999998643 14589999876532 2456667777777654333 45678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcCc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGT 810 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~ 810 (1467)
||++.+|+++||||||++||+...+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|+++..|+.+++.....
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 227 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQAL 227 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcchh
Confidence 99999999999999999999999999887665544568999999999999876 89999999999999887665431100
Q ss_pred hHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCcccHHHHH
Q 000481 811 AFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKPFM 890 (1467)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~ 890 (1467)
.+++.. .+
T Consensus 228 -~~~~~~----------------------------------------------------------~~------------- 235 (490)
T PRK10938 228 -VAQLAH----------------------------------------------------------SE------------- 235 (490)
T ss_pred -hhhhhh----------------------------------------------------------hh-------------
Confidence 000000 00
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 891 DYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAF 970 (1467)
Q Consensus 891 ~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l 970 (1467)
T Consensus 236 -------------------------------------------------------------------------------- 235 (490)
T PRK10938 236 -------------------------------------------------------------------------------- 235 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000481 971 FSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRF 1050 (1467)
Q Consensus 971 ~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1467)
T Consensus 236 -------------------------------------------------------------------------------- 235 (490)
T PRK10938 236 -------------------------------------------------------------------------------- 235 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1051 VQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQN 1130 (1467)
Q Consensus 1051 ~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~ 1130 (1467)
.+... ..
T Consensus 236 -------------~~~~~-~~----------------------------------------------------------- 242 (490)
T PRK10938 236 -------------QLEGV-QL----------------------------------------------------------- 242 (490)
T ss_pred -------------ccCcc-cc-----------------------------------------------------------
Confidence 00000 00
Q ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCC
Q 000481 1131 LTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSW 1210 (1467)
Q Consensus 1131 ~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~w 1210 (1467)
. . ..++.. ... .+
T Consensus 243 -------------~-----------------------------------------------~-~~~~~~--~~~-~~--- 255 (490)
T PRK10938 243 -------------P-----------------------------------------------E-PDEPSA--RHA-LP--- 255 (490)
T ss_pred -------------C-----------------------------------------------c-cccccc--ccc-cC---
Confidence 0 0 000000 000 00
Q ss_pred CCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-CcceEEECCeeCCC-CCHHH
Q 000481 1211 PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-AGGSILIDGVDICS-MGLKD 1288 (1467)
Q Consensus 1211 p~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-~~G~I~IDG~dI~~-i~l~~ 1288 (1467)
+...-|+++|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+.++ ++|+|.+||.++.. .....
T Consensus 256 ~~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~ 333 (490)
T PRK10938 256 ANEPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWD 333 (490)
T ss_pred CCCceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHH
Confidence 01125999999999953 3599999999999999999999999999999999998875 69999999987642 23445
Q ss_pred HhhccEEeccCCcccc---cchHHhcCC-C----C---CCC---HHHHHHHHHHcCCch-HHhhCCCCcccccccCCCCC
Q 000481 1289 LRVKLSIIPQEPTLFR---GSVRTNLDP-L----G---LYS---DDEIWKALEKCQLKT-TISSLPNKLDSSVSDEGENW 1353 (1467)
Q Consensus 1289 LR~~i~iIpQdp~LF~---gTIR~NLdp-~----~---~~s---d~ei~~aL~~~~l~~-~i~~lp~gLdt~v~e~G~nL 1353 (1467)
.|++++++||++.++. -|+++++.. + + ... ++++.++++..++.+ .. +.++ ..|
T Consensus 334 ~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~----~~L 402 (490)
T PRK10938 334 IKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-------DAPF----HSL 402 (490)
T ss_pred HHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-------cCch----hhC
Confidence 7889999999987643 367777531 1 1 111 235677888887754 32 2222 469
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-cEEEEEccCchhhcc--cCEEEEEeCCEEE
Q 000481 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS-N-CTVITVAHRVPTVID--SDMVMVLSYGKLL 1429 (1467)
Q Consensus 1354 S~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~-~-~TvI~IAHRl~ti~~--~DrIlVl~~G~iv 1429 (1467)
|||||||++||||++++|++|||||||++||+++.+.+.+.|++..+ + .|||+|+|+++.+.+ ||+|++|++|+++
T Consensus 403 SgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 403 SWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIY 482 (490)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceE
Confidence 99999999999999999999999999999999999999999987643 3 479999999999975 7999999999998
Q ss_pred EecC
Q 000481 1430 EYDE 1433 (1467)
Q Consensus 1430 E~g~ 1433 (1467)
+.-+
T Consensus 483 ~~~~ 486 (490)
T PRK10938 483 RYVQ 486 (490)
T ss_pred Eeec
Confidence 8643
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-61 Score=665.71 Aligned_cols=472 Identities=17% Similarity=0.197 Sum_probs=367.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 342 SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGA 420 (1467)
Q Consensus 342 ~~~~~~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~ 420 (1467)
....+.+.-..+...+|++.++.+..++++.++|+++|++++|++.+.+... .+..+...++.++.++++++....+.+
T Consensus 1029 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~ 1108 (1522)
T TIGR00957 1029 VSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAA 1108 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777788999999999999999999999999999999987654 344445555555555555443333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000481 421 LPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQL-R 499 (1467)
Q Consensus 421 l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~-~ 499 (1467)
++.++++++...+..++.+..+..++.....++...+..+|.++|+++||.|++|+.|.++..+..+...+....... .
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1188 (1522)
T TIGR00957 1109 VIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN 1188 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222233333334444444555666778899999999999999999999888776665554432211111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000481 500 KAYGTVIYWMSPTIISSVIFLG-CALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHEL 578 (1467)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~f~~-~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~ 578 (1467)
..+...+..+... ++++++ +.....+.+++|.+..++.+...+..|+..+...+..+.++.+|.+|+.+|++.++.
T Consensus 1189 ~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e 1265 (1522)
T TIGR00957 1189 RWLAVRLECVGNC---IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKE 1265 (1522)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 1111111111111 112222 222334679999999999999999999999999999999999999999999965543
Q ss_pred CCccccc-cccc--CCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEE
Q 000481 579 NNDDVRR-ISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1467)
Q Consensus 579 ~~~~~~~-~~~~--~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~ 655 (1467)
.+...+. .+++ +..+.|+|+|++|+|+++. .++|+|+||+|++||++||||++|||||||+++|+|+++|++|+|.
T Consensus 1266 ~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~ 1344 (1522)
T TIGR00957 1266 APWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEII 1344 (1522)
T ss_pred ccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEE
Confidence 2211111 1111 2346899999999997643 4799999999999999999999999999999999999999999999
Q ss_pred EcC-------------eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccCh
Q 000481 656 LYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1467)
Q Consensus 656 ~~g-------------~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 722 (1467)
++| +|+||||+|.+|++||||||....+++++++.++++.|++++.++.+|+|.+|+|||+|.+|||
T Consensus 1345 IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg 1424 (1522)
T TIGR00957 1345 IDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSV 1424 (1522)
T ss_pred ECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCH
Confidence 988 4999999999999999999984346889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecCh
Q 000481 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802 (1467)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~ 802 (1467)
|||||++||||++++|+|+|||||||+||+++++.|. +.++...+++|+|+||||++.+..||+|+||++|+|+|.|+|
T Consensus 1425 GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq-~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~ 1503 (1522)
T TIGR00957 1425 GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQ-STIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAP 1503 (1522)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999998875 556666789999999999999999999999999999999999
Q ss_pred HHHHhcCchHHHHHHH
Q 000481 803 QELLLAGTAFEQLVNA 818 (1467)
Q Consensus 803 ~~l~~~~~~~~~~~~~ 818 (1467)
+||+++++.|.+++++
T Consensus 1504 ~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1504 SNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 9999988999988764
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-64 Score=563.74 Aligned_cols=528 Identities=20% Similarity=0.277 Sum_probs=380.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 284 ICALLRTIAVVVGPLLLYAFVNYSNRGEENL-QEGLSIVGCLIITKV--VESFTQRHCFFGSRRSGMRMRSALMVAVYQK 360 (1467)
Q Consensus 284 ~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~-~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k 360 (1467)
++..+.-++....|.+.+.+++-+..+.... +..+.++++.++-.. +..+..+.-.|...++..-....+-..+|+|
T Consensus 222 ~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrH 301 (790)
T KOG0056|consen 222 FLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRH 301 (790)
T ss_pred HHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHH
Confidence 3444555667788999998888765332211 112222222221110 0111111111111122222233445577999
Q ss_pred HHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 000481 361 QLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLIC---GLLNVP 436 (1467)
Q Consensus 361 ~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~~---~~~~~~ 436 (1467)
.+.+|....-.+.+||+...|..-.+.+. +..+ ...+-...+.++++++.. .+-.....|+++++.+ ..+.+.
T Consensus 302 lh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF--~~~Fn~wFgLIVfl~m~lY~~~Ti~ 378 (790)
T KOG0056|consen 302 LHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYF--FIKFNIWFGLIVFLMMLLYCYVTIK 378 (790)
T ss_pred HHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhh--hhhHhHHHHHHHHHHHHHHhheeee
Confidence 99999988888899999988876555544 2222 223333334555554433 3333334444444332 222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 437 FAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKF----KSLIESRREKEFKWLSEAQLRKAYGTVIYWMSPT 512 (1467)
Q Consensus 437 ~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f----~~~i~~~R~~E~~~l~~~~~~~~~~~~~~~~~~~ 512 (1467)
+...-.+++++....-.+--..-.+.+-|..+||.|+.|+.. .+.|.+..+.|.+.+..-.+.......+... .
T Consensus 379 iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l--g 456 (790)
T KOG0056|consen 379 ITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL--G 456 (790)
T ss_pred eehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--H
Confidence 344445555554444333334456788899999999998654 4444444455544332222211111111111 0
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCC
Q 000481 513 IISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSD 592 (1467)
Q Consensus 513 ~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~ 592 (1467)
+.....+.+|. +..+.+|.|...-+..|+.++.+|++.++.....++...+-++|+.+.+++++...+.....+.....
T Consensus 457 ll~gsll~aY~-Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~ 535 (790)
T KOG0056|consen 457 LLAGSLLCAYR-VTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQ 535 (790)
T ss_pred Hhhhhheeeee-eeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccC
Confidence 11112222332 33588999999999999999999999999999999999999999999997655433222222333456
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 659 (1467)
+.|+|+|++|+|+++ +|+|+||||+++||+.+|+|||+|+||||++++|.++++..+|+|.++| +
T Consensus 536 G~i~fsnvtF~Y~p~--k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~ 613 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPG--KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSS 613 (790)
T ss_pred CeEEEEEeEEecCCC--CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHh
Confidence 789999999999874 6899999999999999999999999999999999999999999999998 4
Q ss_pred EEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCC
Q 000481 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1467)
Q Consensus 660 i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~ 738 (1467)
||.||||..+||+||..||.+|++ ...|++.++.+++++++.|-.+|+|+.|.|||+|-.||||||||||+||+++++|
T Consensus 614 IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 614 IGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP 693 (790)
T ss_pred cCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence 999999999999999999999997 5678888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc-CchHHHHHH
Q 000481 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVN 817 (1467)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~-~~~~~~~~~ 817 (1467)
.|++|||+|||||.++++.| +.++....++||.|+|+||++++-+||.|+|++||+|+|.|+|+|++++ +|.|+++++
T Consensus 694 ~iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq 772 (790)
T KOG0056|consen 694 SIILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQ 772 (790)
T ss_pred cEEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHH
Confidence 99999999999999999997 6788888899999999999999999999999999999999999999988 889999997
Q ss_pred Hhh
Q 000481 818 AHR 820 (1467)
Q Consensus 818 ~~~ 820 (1467)
.+.
T Consensus 773 ~qq 775 (790)
T KOG0056|consen 773 AQQ 775 (790)
T ss_pred HHH
Confidence 554
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-61 Score=559.59 Aligned_cols=545 Identities=21% Similarity=0.285 Sum_probs=394.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 268 RKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1467)
Q Consensus 268 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1467)
.+..++ .|+.+++++++.++..+.....=.+-..+|....-... .....+..+++.=+..+.+++..+.-...+....
T Consensus 8 i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~At 86 (573)
T COG4987 8 LRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDAT 86 (573)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 333334 66677777766665555544444444555543221111 1111222222222334555555555555677788
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 000481 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVL--FGVVGLGALPGL 424 (1467)
Q Consensus 347 ~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~~~~L--~~~lg~~~l~gl 424 (1467)
.++-+.++..+|+|....++....+..+||+.|++..|++.+++........|...+-++.++.+. +.-++.+.+.++
T Consensus 87 frvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~ 166 (573)
T COG4987 87 FRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGL 166 (573)
T ss_pred HHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 899999999999999999998888899999999999999999997665555555444333333333 333344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000481 425 VLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEA-QLRKAYG 503 (1467)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~-~~~~~~~ 503 (1467)
..++..+++...+.+.-++..++..+.+..--+...|.+.|....+++|.++.+.+.++..-+.-.+..++. .+.....
T Consensus 167 ~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~ 246 (573)
T COG4987 167 ILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSD 246 (573)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555666666766777777777777889999999999999999998776654332222222221 1211122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 000481 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMI-PEALSIMIQVKVSFDRINAFLLDHELNNDD 582 (1467)
Q Consensus 504 ~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l-~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~ 582 (1467)
.++......+++..++......+.|..+...+..++........+...+ |..+....|...|.+|+.+.+..++....+
T Consensus 247 a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~ 326 (573)
T COG4987 247 AILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP 326 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC
Confidence 2222223333332233333333445555322222222212222333333 377788999999999999998765543222
Q ss_pred cccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----
Q 000481 583 VRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1467)
Q Consensus 583 ~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---- 658 (1467)
. .. .+..+..++++|++|+|+++ +.++|+|+||++++||.+||+|++|||||||+++|.|.++|++|+|..+|
T Consensus 327 ~-~~-~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~ 403 (573)
T COG4987 327 D-EQ-TATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIA 403 (573)
T ss_pred c-cc-cCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChh
Confidence 1 11 11222379999999999865 46899999999999999999999999999999999999999999999988
Q ss_pred ---------eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 659 ---------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 659 ---------~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
.+++++|.+.+|++|+|||+..++| .++|+..+++++++|++.++..|+|.+|.+||.|..||||||||+
T Consensus 404 ~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRL 483 (573)
T COG4987 404 SLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRL 483 (573)
T ss_pred hCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHH
Confidence 4899999999999999999999987 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
+|||++++|++++||||||.+||+.|++++.+.+ ....+|||+|+||||+..++++|+|+||++|+++++|+|++++.+
T Consensus 484 AlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll-~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 484 ALARALLHDAPLWLLDEPTEGLDPITERQVLALL-FEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred HHHHHHHcCCCeEEecCCcccCChhhHHHHHHHH-HHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc
Confidence 9999999999999999999999999999998654 455679999999999999999999999999999999999999999
Q ss_pred CchHHHHHH
Q 000481 809 GTAFEQLVN 817 (1467)
Q Consensus 809 ~~~~~~~~~ 817 (1467)
++.|.++.+
T Consensus 563 ~g~~~~l~q 571 (573)
T COG4987 563 NGRYKRLYQ 571 (573)
T ss_pred ccHHHHHhc
Confidence 999887753
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-62 Score=671.69 Aligned_cols=474 Identities=17% Similarity=0.231 Sum_probs=370.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000481 960 AHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLV 1039 (1467)
Q Consensus 960 ~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 1039 (1467)
.+.+.+....+...+++++++.|..+|++..+|+++||+++|++.++... ..+..+....+.++..++++........+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l 444 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASL 444 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 56778888889999999999999999999999999999999999999875 34444444444444333322211001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1040 VAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVME 1119 (1467)
Q Consensus 1040 ~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~ 1119 (1467)
+.++++++...+..++.+..+..++.....+....+.+.|.++|+++||+|++|+.+.+++.+..+...+..........
T Consensus 445 ~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~ 524 (1495)
T PLN03232 445 FGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSA 524 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222222233333334444444445556678899999999999999999999999998877665554433332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCC
Q 000481 1120 WLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPA 1199 (1467)
Q Consensus 1120 wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~ 1199 (1467)
+..+...... .++.+..+....+..+.+++|.+-.++++...+..++..+...+..+.....|.+|+.++++.+++.+.
T Consensus 525 ~~~~~~~~~~-~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~ 603 (1495)
T PLN03232 525 FNSFILNSIP-VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA 603 (1495)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 2222111111 111112223333456789999988888888899999999999999999999999999999976554221
Q ss_pred CcCCCCCCCCCCCcceEEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECC
Q 000481 1200 IVEDKRPPSSWPFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1467)
Q Consensus 1200 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG 1278 (1467)
. .++ ..+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+.
T Consensus 604 ~----~~~-~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--- 675 (1495)
T PLN03232 604 Q----NPP-LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--- 675 (1495)
T ss_pred c----cCC-cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---
Confidence 1 111 11234579999999999753 35799999999999999999999999999999999999999998763
Q ss_pred eeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1279 VDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1279 ~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
.+|++|+||||+|.||+|||||||....+++|++++++++.|++.++++.+|+|+||.|||+|.|||||||
T Consensus 676 ---------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 746 (1495)
T PLN03232 676 ---------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746 (1495)
T ss_pred ---------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHH
Confidence 46889999999999999999999986667899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHH
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAIL-QRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~I-q~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
||||||||++++|+|+|||||||+||++|++.| ++.++...+++|+|+||||++++..||+|++|++|+|+|.|+|+||
T Consensus 747 QRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL 826 (1495)
T PLN03232 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAEL 826 (1495)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999999999999999999999866 5667777789999999999999999999999999999999999999
Q ss_pred hccCChhHHHHHHHH
Q 000481 1438 METNSSFSKLVAEYW 1452 (1467)
Q Consensus 1438 l~~~~~f~~lv~~~~ 1452 (1467)
+++++.|+++++++.
T Consensus 827 ~~~~~~~~~l~~~~~ 841 (1495)
T PLN03232 827 SKSGSLFKKLMENAG 841 (1495)
T ss_pred HhcchhHHHHHHhcc
Confidence 998999999987654
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-61 Score=610.26 Aligned_cols=471 Identities=17% Similarity=0.166 Sum_probs=358.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHH
Q 000481 945 STASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELL 1024 (1467)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l 1024 (1467)
.++..++.++..++....+.+...+++.++++++++.|++||++.++|++++|+++|++.+...+. .+..++..++.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i 136 (547)
T PRK10522 58 LLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTL 136 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 333345667788888888999999999999999999999999999999999999999999987554 4566677777788
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccH---HHHHHHHH
Q 000481 1025 AIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMV---DRFFQNYL 1101 (1467)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~---~~f~~~~~ 1101 (1467)
+.++++++.+|.+.++++..+++..++..+..+..+...+...+..+...+++.|.++|+.+++ ++.+ +.+.+++.
T Consensus 137 ~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~ 215 (547)
T PRK10522 137 GSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYE 215 (547)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHh
Confidence 8888888899998877666555554444444444444444444566788999999999999995 5443 35566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc-cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1102 KLVDIDASLFFHTNGVMEWLILRVEALQNLTL-FTAALFLVLIP-RGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLAN 1179 (1467)
Q Consensus 1102 ~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~-~~~~~~~~~~~-~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~ 1179 (1467)
+..+...+...... ++......+..+.. ...++.++... .+....+.++....+...+..++..+...+.++..
T Consensus 216 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 291 (547)
T PRK10522 216 PDAQEYRHHIIRAD----TFHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLS 291 (547)
T ss_pred HHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554443322211 11111111111111 11111111111 11122333333344444566788888899999999
Q ss_pred HhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHH
Q 000481 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259 (1467)
Q Consensus 1180 ~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL 1259 (1467)
...+.+|+.++.+.+++++.. ...+. |..+.|+|+||+|+|++ .+++|+|+||+|+|||++||||+||||||||
T Consensus 292 ~~~a~~ri~~l~~~~~~~~~~--~~~~~---~~~~~i~~~~v~f~y~~-~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL 365 (547)
T PRK10522 292 AQVAFNKLNKLALAPYKAEFP--RPQAF---PDWQTLELRNVTFAYQD-NGFSVGPINLTIKRGELLFLIGGNGSGKSTL 365 (547)
T ss_pred HHHHHHHHHHHhccccccccc--ccccc---CcCceEEEEEEEEEeCC-CCeEEecceEEEcCCCEEEEECCCCCCHHHH
Confidence 999999999987655432211 11111 12367999999999974 3469999999999999999999999999999
Q ss_pred HHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCC
Q 000481 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLP 1339 (1467)
Q Consensus 1260 ~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp 1339 (1467)
+++|+|+++|++|+|.+||+|+++++.+++|+++++|||||.+|+||+++| . ...+|++++++++++++.+.+.. +
T Consensus 366 ~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n-~--~~~~~~~~~~~~~~~~l~~~~~~-~ 441 (547)
T PRK10522 366 AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE-G--KPANPALVEKWLERLKMAHKLEL-E 441 (547)
T ss_pred HHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc-c--CchHHHHHHHHHHHcCCchhhhc-c
Confidence 999999999999999999999999999999999999999999999999999 2 34688899999999998876653 4
Q ss_pred CCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhccc
Q 000481 1340 NKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVIDS 1417 (1467)
Q Consensus 1340 ~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~ 1417 (1467)
+|. .+|.+||||||||++||||++++|+|||||||||+||++|++.+.+.+++.. +++|+|+||||++++..|
T Consensus 442 ~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~ 516 (547)
T PRK10522 442 DGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHA 516 (547)
T ss_pred ccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhC
Confidence 442 2488999999999999999999999999999999999999999999987654 489999999999999999
Q ss_pred CEEEEEeCCEEEEe-cChhH
Q 000481 1418 DMVMVLSYGKLLEY-DEPSK 1436 (1467)
Q Consensus 1418 DrIlVl~~G~ivE~-g~p~~ 1436 (1467)
|+|++|++|+++|. |++.+
T Consensus 517 d~i~~l~~G~i~e~~~~~~~ 536 (547)
T PRK10522 517 DRLLEMRNGQLSELTGEERD 536 (547)
T ss_pred CEEEEEECCEEEEecCCchh
Confidence 99999999999998 44444
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=620.87 Aligned_cols=479 Identities=21% Similarity=0.268 Sum_probs=333.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcCCC
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l~~ 671 (1467)
.|+++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .|+||+|+|.+++
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 5899999999962 25799999999999999999999999999999999999999999999864 6999999998875
Q ss_pred -CCHHHHHhcCCC-C----------------CHH-------HHHH---HHHHh-------cchHHHhcCCCCCCccccCC
Q 000481 672 -GSIRDNILYGKP-M----------------DKA-------RYDK---AIKAC-------ALDKDINNFDHGDLTEIGQR 716 (1467)
Q Consensus 672 -~ti~eNi~~g~~-~----------------~~~-------~~~~---~~~~~-------~l~~~~~~l~~g~~t~ig~~ 716 (1467)
.|++||+.++.. + ..+ ++.+ .++.+ .+...++.+.-. ....+
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~~ 160 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP---PWDAK 160 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC---cccCc
Confidence 499999987631 0 000 0000 01100 011122222111 12456
Q ss_pred CCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCe
Q 000481 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1467)
Q Consensus 717 g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1467)
..+|||||||||+||||++.+|+++|||||||+||+.+.+++.+. +... +.|+|+|||+++++.. ||+|++|++|+
T Consensus 161 ~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~-L~~~--~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQF-LHDY--PGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHH-HHhC--CCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 779999999999999999999999999999999999999988754 4433 3599999999999986 89999999999
Q ss_pred Ee-EecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcc
Q 000481 796 IT-QSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLT 874 (1467)
Q Consensus 796 i~-~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (1467)
++ +.|+++++.+.... +. .....
T Consensus 238 i~~~~g~~~~~~~~~~~--~~-~~~~~----------------------------------------------------- 261 (556)
T PRK11819 238 GIPWEGNYSSWLEQKAK--RL-AQEEK----------------------------------------------------- 261 (556)
T ss_pred EEEecCCHHHHHHHHHH--HH-HHHHH-----------------------------------------------------
Confidence 86 78988876542100 00 00000
Q ss_pred hHHHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHH
Q 000481 875 EDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYF 954 (1467)
Q Consensus 875 ~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 954 (1467)
..+.... -++.
T Consensus 262 ~~~~~~~----------~~~~----------------------------------------------------------- 272 (556)
T PRK11819 262 QEAARQK----------ALKR----------------------------------------------------------- 272 (556)
T ss_pred HHHHHHH----------HHHH-----------------------------------------------------------
Confidence 0000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 000481 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVT 1034 (1467)
Q Consensus 955 ~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~ 1034 (1467)
+..
T Consensus 273 ---------------~~~-------------------------------------------------------------- 275 (556)
T PRK11819 273 ---------------ELE-------------------------------------------------------------- 275 (556)
T ss_pred ---------------HHH--------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1035 WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHT 1114 (1467)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~ 1114 (1467)
..++ ++. + + ..
T Consensus 276 --------------------------~~~~------~~~---------~----~----~~-------------------- 286 (556)
T PRK11819 276 --------------------------WVRQ------SPK---------A----R----QA-------------------- 286 (556)
T ss_pred --------------------------HHHH------hhh---------h----h----HH--------------------
Confidence 0000 000 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCC
Q 000481 1115 NGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIP 1194 (1467)
Q Consensus 1115 ~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~ 1194 (1467)
..+......+|..+. .+
T Consensus 287 -------------------------------------------------------------~~~~~~~~~~~~~~~--~~ 303 (556)
T PRK11819 287 -------------------------------------------------------------KSKARLARYEELLSE--EY 303 (556)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHhhcc--cc
Confidence 000000000111000 00
Q ss_pred CCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceE
Q 000481 1195 PEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274 (1467)
Q Consensus 1195 ~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I 1274 (1467)
.+.+.......++...+.+.-|+++|++++|.+ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i 381 (556)
T PRK11819 304 QKRNETNEIFIPPGPRLGDKVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381 (556)
T ss_pred cccCCCceeecCCCCCCCCeEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 000000000001111112336999999999953 359999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhhccEEeccCC-cccc-cchHHhcCCCC----C-CCHHHHHHHHHHcCCchHHhhCCCCcccccc
Q 000481 1275 LIDGVDICSMGLKDLRVKLSIIPQEP-TLFR-GSVRTNLDPLG----L-YSDDEIWKALEKCQLKTTISSLPNKLDSSVS 1347 (1467)
Q Consensus 1275 ~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~-gTIR~NLdp~~----~-~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~ 1347 (1467)
.+++ + .+++|+||++ .++. -|+++|+.... . ..+++..++++..++.+.. .+..+
T Consensus 382 ~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~- 443 (556)
T PRK11819 382 KIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD------QQKKV- 443 (556)
T ss_pred EECC-c----------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH------hcCch-
Confidence 9965 2 2699999997 5665 49999985211 1 1234455677777764211 22233
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeC-
Q 000481 1348 DEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSY- 1425 (1467)
Q Consensus 1348 e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~- 1425 (1467)
..||||||||++||||++.+|++|||||||++||..+...+.+.|++. + .|+|+|||+++.+.. ||+|++|++
T Consensus 444 ---~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~ 518 (556)
T PRK11819 444 ---GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGD 518 (556)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999875 4 489999999998876 999999996
Q ss_pred CEEEE-ecChhHHhc
Q 000481 1426 GKLLE-YDEPSKLME 1439 (1467)
Q Consensus 1426 G~ivE-~g~p~~Ll~ 1439 (1467)
|++.+ .|+++++++
T Consensus 519 g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 519 SQVEWFEGNFQEYEE 533 (556)
T ss_pred CeEEEecCCHHHHHH
Confidence 88875 677877766
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-62 Score=619.71 Aligned_cols=479 Identities=22% Similarity=0.289 Sum_probs=334.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcCCC
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l~~ 671 (1467)
-++++|++++|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ .|+||+|+|+++.
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 4889999999962 24699999999999999999999999999999999999999999999874 6999999998864
Q ss_pred -CCHHHHHhcCCC-------------------CC--------HHHHHHHHHHhcch-------HHHhcCCCCCCccccCC
Q 000481 672 -GSIRDNILYGKP-------------------MD--------KARYDKAIKACALD-------KDINNFDHGDLTEIGQR 716 (1467)
Q Consensus 672 -~ti~eNi~~g~~-------------------~~--------~~~~~~~~~~~~l~-------~~~~~l~~g~~t~ig~~ 716 (1467)
.|++|||.++.. .+ .+++.++++.++.. +-++.+... ....+
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP---PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC---cccCc
Confidence 599999987631 01 01233344444432 122222211 12456
Q ss_pred CCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCe
Q 000481 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1467)
Q Consensus 717 g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1467)
..+|||||||||+||||++.+|+++||||||++||+++.+++.+.+ ... ++|+|+|||+++++.. ||+|++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L-~~~--~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHL-QEY--PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHH-HhC--CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 7899999999999999999999999999999999999999887643 332 3699999999999986 89999999999
Q ss_pred Ee-EecChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcc
Q 000481 796 IT-QSGNYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLT 874 (1467)
Q Consensus 796 i~-~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (1467)
++ ..|+++++.+.... +. .....
T Consensus 236 i~~~~g~~~~~~~~~~~--~~-~~~~~----------------------------------------------------- 259 (552)
T TIGR03719 236 GIPWEGNYSSWLEQKEK--RL-EQEEK----------------------------------------------------- 259 (552)
T ss_pred EEEecCCHHHHHHHHHH--HH-HHHHH-----------------------------------------------------
Confidence 76 78998887542100 00 00000
Q ss_pred hHHHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHH
Q 000481 875 EDEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYF 954 (1467)
Q Consensus 875 ~~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 954 (1467)
+.+. +...+... .-|+
T Consensus 260 ~~~~----------~~~~~~~~-----------------------~~~~------------------------------- 275 (552)
T TIGR03719 260 EESA----------RQKALKRE-----------------------LEWV------------------------------- 275 (552)
T ss_pred HHHH----------HHHHHHHH-----------------------HHHH-------------------------------
Confidence 0000 00000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 000481 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVT 1034 (1467)
Q Consensus 955 ~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~ 1034 (1467)
T Consensus 276 -------------------------------------------------------------------------------- 275 (552)
T TIGR03719 276 -------------------------------------------------------------------------------- 275 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1035 WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHT 1114 (1467)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~ 1114 (1467)
. + .+. ..+ + +.
T Consensus 276 -----------------~-----------~------~~~---~~~---------~---------~~-------------- 286 (552)
T TIGR03719 276 -----------------R-----------S------SPK---ARQ---------A---------KS-------------- 286 (552)
T ss_pred -----------------H-----------h------hhh---hHH---------H---------HH--------------
Confidence 0 0 000 000 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCC
Q 000481 1115 NGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIP 1194 (1467)
Q Consensus 1115 ~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~ 1194 (1467)
.......++..+ ..+
T Consensus 287 ---------------------------------------------------------------~~~~~~~~~~~~--~~~ 301 (552)
T TIGR03719 287 ---------------------------------------------------------------KARLARYEELLS--QEF 301 (552)
T ss_pred ---------------------------------------------------------------HHHHHHHHhhhh--hcc
Confidence 000000011110 000
Q ss_pred CCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceE
Q 000481 1195 PEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274 (1467)
Q Consensus 1195 ~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I 1274 (1467)
+..+.......+...-+.+..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i 379 (552)
T TIGR03719 302 QKRNETAEIYIPPGPRLGDKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379 (552)
T ss_pred cccCCCceeecCCCCCCCCeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE
Confidence 000000000000000011235999999999953 359999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHHhhccEEeccCCc-ccc-cchHHhcCCC-C--CC--CHHHHHHHHHHcCCchHHhhCCCCcccccc
Q 000481 1275 LIDGVDICSMGLKDLRVKLSIIPQEPT-LFR-GSVRTNLDPL-G--LY--SDDEIWKALEKCQLKTTISSLPNKLDSSVS 1347 (1467)
Q Consensus 1275 ~IDG~dI~~i~l~~LR~~i~iIpQdp~-LF~-gTIR~NLdp~-~--~~--sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~ 1347 (1467)
.+++ + .+|+|+||++. ++. -|+++|+... . .. .+.+..++++..++.+.. .+.++
T Consensus 380 ~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~- 441 (552)
T TIGR03719 380 KIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD------QQKKV- 441 (552)
T ss_pred EECC-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH------hcCch-
Confidence 9965 2 16999999973 665 4999998521 1 11 133455677777764211 12222
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeC-
Q 000481 1348 DEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSY- 1425 (1467)
Q Consensus 1348 e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~- 1425 (1467)
..||||||||++||||++.+|++|||||||++||..+...+.+.|++. . .|||+|+|+++.+.. ||+|++|++
T Consensus 442 ---~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~ 516 (552)
T TIGR03719 442 ---GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGD 516 (552)
T ss_pred ---hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999976 3 489999999999876 999999997
Q ss_pred CEEEEe-cChhHHhc
Q 000481 1426 GKLLEY-DEPSKLME 1439 (1467)
Q Consensus 1426 G~ivE~-g~p~~Ll~ 1439 (1467)
|+++++ |++++..+
T Consensus 517 ~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 517 SHVEWFEGNYSEYEE 531 (552)
T ss_pred CeEEEeCCCHHHHHH
Confidence 688754 66666544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-63 Score=550.80 Aligned_cols=453 Identities=25% Similarity=0.433 Sum_probs=347.4
Q ss_pred CcEEEEeEEEEeCCC-CCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC--------
Q 000481 593 RSVKIQEGNFSWDPE-LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~-~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g-------- 658 (1467)
.-++++|.+.++... ....++++|||+|++||.+|+||+||||||-..++++|+++. -+|+|.++|
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 357788888777532 346799999999999999999999999999999999999975 468998876
Q ss_pred ---------eEEEEccCCcC-CC--CCHH----HHHhcCCCCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCC
Q 000481 659 ---------SIAYVSQTSWI-QS--GSIR----DNILYGKPMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718 (1467)
Q Consensus 659 ---------~i~yv~Q~~~l-~~--~ti~----eNi~~g~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~ 718 (1467)
+|++++|+|-- .| -||. |-|...+... +++..+.++..++.+--. .+.....
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPH 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPH 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCc
Confidence 59999999853 23 2554 4444444333 344555566666543221 2234567
Q ss_pred ccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-CCEEEEEeCCeE
Q 000481 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1467)
Q Consensus 719 ~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1467)
.|||||||||.||.||..+||+||-||||.|||..+..+|.+.+.... ..|-.+++|||++..+++ ||+|+||.+|++
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence 999999999999999999999999999999999999999986544332 348899999999999987 899999999999
Q ss_pred eEecChHHHHhcCc-hHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcch
Q 000481 797 TQSGNYQELLLAGT-AFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTE 875 (1467)
Q Consensus 797 ~~~G~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (1467)
+|.|+.+++..... .|.+..-+
T Consensus 237 vE~~~t~~lF~~PqHpYTr~Ll~--------------------------------------------------------- 259 (534)
T COG4172 237 VETGTTETLFAAPQHPYTRKLLA--------------------------------------------------------- 259 (534)
T ss_pred eecCcHHHHhhCCCChHHHHHHh---------------------------------------------------------
Confidence 99998777654321 01100000
Q ss_pred HHHhhcCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHH
Q 000481 876 DEEMEIGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFR 955 (1467)
Q Consensus 876 ~e~~~~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~ 955 (1467)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000481 956 SFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTW 1035 (1467)
Q Consensus 956 ~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~ 1035 (1467)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1036 QVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTN 1115 (1467)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~ 1115 (1467)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCC
Q 000481 1116 GVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPP 1195 (1467)
Q Consensus 1116 ~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~ 1195 (1467)
..|.
T Consensus 260 ----------------------------------------------------------------------------aeP~ 263 (534)
T COG4172 260 ----------------------------------------------------------------------------AEPS 263 (534)
T ss_pred ----------------------------------------------------------------------------cCCC
Confidence 0000
Q ss_pred CCCCCcCCCCCCCCCCCcceEEEEEEEEEeCC---------CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 000481 1196 EPPAIVEDKRPPSSWPFKGRIELRQLKIRYRP---------NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL 1266 (1467)
Q Consensus 1196 e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~---------~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl 1266 (1467)
-. .+|..-...--++.+|+.+.|+- +.-.+.+||||+.++||++||||+||||||||-++|+|+
T Consensus 264 g~-------~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL 336 (534)
T COG4172 264 GD-------PPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336 (534)
T ss_pred CC-------CCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhh
Confidence 00 01100011224677777777731 112478999999999999999999999999999999999
Q ss_pred cCCCcceEEECCeeCCCCCHHH---HhhccEEeccCCc--ccc-cchHHhcC-------CCC--CCCHHHHHHHHHHcCC
Q 000481 1267 VEPAGGSILIDGVDICSMGLKD---LRVKLSIIPQEPT--LFR-GSVRTNLD-------PLG--LYSDDEIWKALEKCQL 1331 (1467)
Q Consensus 1267 ~~~~~G~I~IDG~dI~~i~l~~---LR~~i~iIpQdp~--LF~-gTIR~NLd-------p~~--~~sd~ei~~aL~~~~l 1331 (1467)
.+++ |+|.++|.||...+.++ +|+++-+|+|||+ |=+ .||.+-+. |-. .-.|+.+.+||+.+||
T Consensus 337 ~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGL 415 (534)
T COG4172 337 IPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGL 415 (534)
T ss_pred cCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCC
Confidence 9876 99999999999988776 6899999999996 211 24443331 211 1135678999999999
Q ss_pred chHHhh-CCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEc
Q 000481 1332 KTTISS-LPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVA 1408 (1467)
Q Consensus 1332 ~~~i~~-lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IA 1408 (1467)
+.-..+ .| ..+|||||||||||||+.-+|++++||||||+||..-.+.|-+.+|+.- .+-+-++|+
T Consensus 416 Dp~~r~RYP-----------hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFIS 484 (534)
T COG4172 416 DPATRNRYP-----------HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFIS 484 (534)
T ss_pred ChhHhhcCC-----------cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 865432 33 3589999999999999999999999999999999999999999998643 467999999
Q ss_pred cCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cCChhH
Q 000481 1409 HRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNSSFS 1445 (1467)
Q Consensus 1409 HRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f~ 1445 (1467)
|+|..++. ||+|+||.+|+|||+|+-+++++ ++..|-
T Consensus 485 HDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT 523 (534)
T COG4172 485 HDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYT 523 (534)
T ss_pred ccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHH
Confidence 99999976 99999999999999999999998 565553
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=656.18 Aligned_cols=473 Identities=19% Similarity=0.234 Sum_probs=353.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 342 SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGA 420 (1467)
Q Consensus 342 ~~~~~~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~ 420 (1467)
..+.+.+.-..+...+|++.++.+..+++++++|+|+|++++|++.+.+... .+..+....+.++.+++++.....+..
T Consensus 977 ~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~ 1056 (1622)
T PLN03130 977 LIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISL 1056 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777888999999999999999999999999999999987543 344444555555554444433322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 421 LPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK 500 (1467)
Q Consensus 421 l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~ 500 (1467)
++.+++++++..+..++.+..++.++.....+....+..+|.++|+++||.|++|+.|.+...+..+...+......
T Consensus 1057 ~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~--- 1133 (1622)
T PLN03130 1057 WAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNM--- 1133 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 22222222222222222333333444444555667788999999999999999999888776655554433221111
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHH-HhCCCCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000481 501 AYGTVIYWMSPTIISSVI-FLGCA-LTGSAPLN-----ASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573 (1467)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~-f~~~~-l~~~~~Lt-----~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL 573 (1467)
...........++..+++ +++.. ....+..+ ++.+-.++++...+..++..+......+.++.+|++|+.+++
T Consensus 1134 ~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~ 1213 (1622)
T PLN03130 1134 SSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYI 1213 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111000111111111 22222 22222111 233334445556666777777788888899999999999999
Q ss_pred cCCCCCCcccc-ccccc--CCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCC
Q 000481 574 LDHELNNDDVR-RISLQ--KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650 (1467)
Q Consensus 574 ~~~e~~~~~~~-~~~~~--~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~ 650 (1467)
+.++..+...+ ..+.+ +..+.|+|+|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++|+|+++|+
T Consensus 1214 ~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~ 1292 (1622)
T PLN03130 1214 DLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE 1292 (1622)
T ss_pred CCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC
Confidence 76543321111 11111 234679999999999754 357999999999999999999999999999999999999999
Q ss_pred CcEEEEcC-------------eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCC
Q 000481 651 SGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1467)
Q Consensus 651 ~G~i~~~g-------------~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g 717 (1467)
+|+|.++| +|+||||+|.+|++||||||.++.+++++++.++++.|++++.++.+|+|++|.|||+|
T Consensus 1293 ~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G 1372 (1622)
T PLN03130 1293 RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAG 1372 (1622)
T ss_pred CceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCC
Confidence 99999988 49999999999999999999999889999999999999999999999999999999999
Q ss_pred CccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEe
Q 000481 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1467)
Q Consensus 718 ~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1467)
.+||||||||++||||++++|+|+|||||||+||+++++.|. +.++...+++|+|+|+||++++..||+|+||++|+|+
T Consensus 1373 ~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq-~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~Iv 1451 (1622)
T PLN03130 1373 ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQ-KTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVV 1451 (1622)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999875 5566667899999999999999999999999999999
Q ss_pred EecChHHHHhc-CchHHHHHHHh
Q 000481 798 QSGNYQELLLA-GTAFEQLVNAH 819 (1467)
Q Consensus 798 ~~G~~~~l~~~-~~~~~~~~~~~ 819 (1467)
|.|+|+||++. ++.|.++++..
T Consensus 1452 E~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1452 EFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred EeCCHHHHHhCCCCHHHHHHHHc
Confidence 99999999987 58899988654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-61 Score=616.67 Aligned_cols=200 Identities=21% Similarity=0.327 Sum_probs=167.2
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++. .+++
T Consensus 312 ~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 6999999999953 45999999999999999999999999999999999999999999999741 3699
Q ss_pred EeccCC--cccc-cchHHhcCCC-CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccC
Q 000481 1295 IIPQEP--TLFR-GSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKR 1370 (1467)
Q Consensus 1295 iIpQdp--~LF~-gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~ 1370 (1467)
|+||++ .+.. .|+.+++... ....++++.+.|+..++.... .+.++ ..||||||||++||||++++
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~------~~~~~----~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDK------VTEET----RRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhH------hcCch----hhCCHHHHHHHHHHHHHhcC
Confidence 999985 3443 3788776311 123456677888888774211 22233 46999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEE-EecChhHHhc
Q 000481 1371 NRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLL-EYDEPSKLME 1439 (1467)
Q Consensus 1371 ~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~iv-E~g~p~~Ll~ 1439 (1467)
|++|||||||++||..+...+.+.|++. . .|||+|+|++..+.. ||+|++|++|+++ ..|++++..+
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999999999999999875 4 599999999999976 9999999999998 5788888643
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-59 Score=639.85 Aligned_cols=468 Identities=15% Similarity=0.183 Sum_probs=359.1
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1467)
Q Consensus 350 r~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1467)
...+...+|++.++.+..+++++++|+++|++++|++.+.+.+.. +..+....+.++.++++++....+..++.+++++
T Consensus 1030 ~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~ 1109 (1560)
T PTZ00243 1030 SRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGY 1109 (1560)
T ss_pred HHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667889999999999999999999999999999999886542 4444455555555555444333322222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000481 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSE-AQLRKAYGTVIY 507 (1467)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~-~~~~~~~~~~~~ 507 (1467)
+...+...+.+..+..++.....++...+.++|.++|+++||.|++|+.|.++..+.-+...+.... ............
T Consensus 1110 ~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~ 1189 (1560)
T PTZ00243 1110 LYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVE 1189 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333344444555555566677778999999999999999999998877665544433322111 111111111111
Q ss_pred HHHHHHHHHHHHHH--HHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cc--
Q 000481 508 WMSPTIISSVIFLG--CALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN-DD-- 582 (1467)
Q Consensus 508 ~~~~~~~~~~~f~~--~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~-~~-- 582 (1467)
.+..+++.++.+++ ......+.++++.+..++.+...+..|+..+...+..+.++.+|++|+.++++..+.++ ..
T Consensus 1190 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~ 1269 (1560)
T PTZ00243 1190 FLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELD 1269 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 12222222222222 12233456789988888888899999999999999999999999999999985322110 00
Q ss_pred ---------------------ccc-c-----cccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCC
Q 000481 583 ---------------------VRR-I-----SLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAG 635 (1467)
Q Consensus 583 ---------------------~~~-~-----~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsG 635 (1467)
.+. . +..+..+.|+|+|++|+|+++ ..++|+|+||+|++||++||||++|||
T Consensus 1270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSG 1348 (1560)
T PTZ00243 1270 EEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSG 1348 (1560)
T ss_pred ccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCC
Confidence 000 0 001123579999999999754 346999999999999999999999999
Q ss_pred hHHHHHHHhCCCCCCCcEEEEcC-------------eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHH
Q 000481 636 KSSLLYAILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDI 702 (1467)
Q Consensus 636 KSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~ 702 (1467)
||||+++|+|+++|++|+|.++| .|+||||+|.+|++||||||..+.++++++++++++.|++++.+
T Consensus 1349 KSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I 1428 (1560)
T PTZ00243 1349 KSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERV 1428 (1560)
T ss_pred HHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHH
Confidence 99999999999999999999988 49999999999999999999987788999999999999999999
Q ss_pred hcCCCCCCccccCCCCccChHHHHHHHHHHHHhcC-CCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcch
Q 000481 703 NNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND-ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781 (1467)
Q Consensus 703 ~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~-~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~ 781 (1467)
+.+|+|++|.|||+|.+||||||||++||||++++ |+|+|||||||+||+++++.|. +.++...+++|+|+|+||++.
T Consensus 1429 ~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~~~~~TvI~IAHRl~t 1507 (1560)
T PTZ00243 1429 ASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ-ATVMSAFSAYTVITIAHRLHT 1507 (1560)
T ss_pred hhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH-HHHHHHCCCCEEEEEeccHHH
Confidence 99999999999999999999999999999999996 8999999999999999999885 556666789999999999999
Q ss_pred hhcCCEEEEEeCCeEeEecChHHHHhc-CchHHHHHHHh
Q 000481 782 LSEVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVNAH 819 (1467)
Q Consensus 782 l~~~d~i~~l~~G~i~~~G~~~~l~~~-~~~~~~~~~~~ 819 (1467)
+..||+|+||++|+|++.|+|+|++++ ++.|.++++..
T Consensus 1508 i~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1508 VAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999999999999999974 78899887653
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=540.17 Aligned_cols=487 Identities=19% Similarity=0.259 Sum_probs=364.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHH-HHHHHHH
Q 000481 942 AGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSI-VFVAASG 1020 (1467)
Q Consensus 942 ~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l-~~~~~~~ 1020 (1467)
.++.++..++.++|+.+..+.+.+..+.+...++...+++|..--...+....+ +|.+.+..++...- .-++..-
T Consensus 70 l~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaP 145 (580)
T COG4618 70 LGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAP 145 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCc
Confidence 344556677888999999999999999999999999988887644333333444 35555555443211 1111111
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHH
Q 000481 1021 TELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNY 1100 (1467)
Q Consensus 1021 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~ 1100 (1467)
. .-..+++++.+.|++.++++...++...+...--...++--+..++..+.-..+..-+..+..+|+|.|+.....+++
T Consensus 146 W-~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW 224 (580)
T COG4618 146 W-MPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRW 224 (580)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHH
Confidence 1 112234445555655544433332222222211122222222233334445678888999999999999987777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1101 LKLVDIDASLFFHTNGVMEWLILRVEALQ-NLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLAN 1179 (1467)
Q Consensus 1101 ~~~~d~~~~~~~~~~~~~~wl~~rl~~~~-~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~ 1179 (1467)
.+....+....-.....+.-++.....+- .+-..+.++..+++..+++++|.+-..-...-..-.++-..+..|..+..
T Consensus 225 ~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~ 304 (580)
T COG4618 225 GRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVA 304 (580)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHH
Confidence 65443333222222222211211111111 12233445556778899999997644433333445677788899999999
Q ss_pred HhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHH
Q 000481 1180 YIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259 (1467)
Q Consensus 1180 ~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL 1259 (1467)
...|..|+.+.++..++..... .-|. .+|.+.++++++.-++...|+|+||||+++|||-+|||||||||||||
T Consensus 305 Ar~s~~Rl~~lL~~~p~~~~~m---~LP~---P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTL 378 (580)
T COG4618 305 ARQSYKRLNELLAELPAAAERM---PLPA---PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTL 378 (580)
T ss_pred HHHHHHHHHHHHHhCccccCCC---CCCC---CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHH
Confidence 9999999999987655442211 1111 268999999999776666789999999999999999999999999999
Q ss_pred HHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhC
Q 000481 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSL 1338 (1467)
Q Consensus 1260 ~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~l 1338 (1467)
.++|.|.+.|.+|.|.+||-|+.+.+.+++-++|||.|||-.||+|||+|||.-|+ +.+++.|.+|.+.++.||.|.++
T Consensus 379 aR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~l 458 (580)
T COG4618 379 ARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRL 458 (580)
T ss_pred HHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999998787 67788899999999999999999
Q ss_pred CCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCcEEEEEccCchhhccc
Q 000481 1339 PNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQE-FSNCTVITVAHRVPTVIDS 1417 (1467)
Q Consensus 1339 p~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~-~~~~TvI~IAHRl~ti~~~ 1417 (1467)
|+||||.|||+|..|||||||||+||||+..+|+++|||||.||||.+-|+.+.++|.+. .+|+|+|+||||.+.+..+
T Consensus 459 P~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 459 PQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred cCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999988764 4699999999999999999
Q ss_pred CEEEEEeCCEEEEecChhHHhc
Q 000481 1418 DMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1418 DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|+|+||++|++..||+-+|.++
T Consensus 539 Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 539 DKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred ceeeeecCChHHhcCCHHHHHH
Confidence 9999999999999999999887
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=600.46 Aligned_cols=199 Identities=21% Similarity=0.342 Sum_probs=164.9
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ +|+
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 5999999999953 35999999999999999999999999999999999999999999999 4332 699
Q ss_pred EeccCC-ccccc-chHHhcCCC-CCC--C--HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1295 IIPQEP-TLFRG-SVRTNLDPL-GLY--S--DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1295 iIpQdp-~LF~g-TIR~NLdp~-~~~--s--d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
|+||++ .++.. |+++|+... ... . +.++.+.|+..++... ..+.++ ..||||||||++||||+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~----~~LSgGekqRl~la~al 455 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPK------RAMTPV----KALSGGERNRLLLARLF 455 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHH------HHhChh----hhCCHHHHHHHHHHHHH
Confidence 999986 46654 999998531 111 2 4456677777766421 123333 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEe-CCEEEEe-cChhHHh
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLS-YGKLLEY-DEPSKLM 1438 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~-~G~ivE~-g~p~~Ll 1438 (1467)
+++|++|||||||++||..+...+.+.+++. +.|||+|||+.+.+.. ||+|++|+ +|++.++ |++++-+
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 9999999999999999999999999999875 5699999999999865 99999998 8999886 5666653
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-58 Score=579.75 Aligned_cols=510 Identities=17% Similarity=0.148 Sum_probs=375.4
Q ss_pred HHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 271 ITN-VYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRM 349 (1467)
Q Consensus 271 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 349 (1467)
+++ .+++.++++.++.++..++.++.|.+++.+++...... . ...+.+++ +++ +..++.....+...+.+.++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~-~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~ 84 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG-Q-GSLFSFGG-LCL---LALLFRIGADIFPAYAGMHI 84 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-c-hHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHH
Confidence 556 77888888888899999999999999988876321110 0 11111221 111 22233333344566788888
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 350 RSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1467)
Q Consensus 350 r~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1467)
...++..+|+|.++++...+++.++|++++++++|++.++++...+.......+.+++++++++.+-...+++.++++++
T Consensus 85 ~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~ 164 (555)
T TIGR01194 85 IANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIII 164 (555)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998655444444444555555555444433333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 000481 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKSLIE----SRREKEFKWLSEAQLRKAYG 503 (1467)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~--~f~~~i~----~~R~~E~~~l~~~~~~~~~~ 503 (1467)
...+..+..++.++...+.++..++..+.+.|.+.|+++||.++.|+ ...++.+ +.++...+..+ ......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 241 (555)
T TIGR01194 165 GTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEIL---IFIAAE 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHH
Confidence 33334445566666677777888889999999999999999999853 2233332 22222221111 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc--
Q 000481 504 TVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNND-- 581 (1467)
Q Consensus 504 ~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~-- 581 (1467)
.+..........++.+++.+ .+.+|.+.+++++.+...+..|+..+...+..+.++++|.+||.++++.++.++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~ 318 (555)
T TIGR01194 242 NFGQLLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPEL 318 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 11111111111222222222 1578999999999999999999999999999999999999999999853211100
Q ss_pred -ccccc-----cccCCCCcEEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcE
Q 000481 582 -DVRRI-----SLQKSDRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653 (1467)
Q Consensus 582 -~~~~~-----~~~~~~~~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~ 653 (1467)
..+.. +.......|+++|++|+|++.+ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~ 398 (555)
T TIGR01194 319 ELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGE 398 (555)
T ss_pred cccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 00000 1111235799999999997532 246999999999999999999999999999999999999999999
Q ss_pred EEEcC-------------eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCcc
Q 000481 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1467)
Q Consensus 654 i~~~g-------------~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~L 720 (1467)
|.++| .++||+|++++|++|+++|+ ..+.++++.+++++.++++++++.+|+|++|. .+|
T Consensus 399 i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~L 471 (555)
T TIGR01194 399 ILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TAL 471 (555)
T ss_pred EEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccC
Confidence 99987 38999999999999999995 23456788899999999999999999999984 789
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHH-hcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEe
Q 000481 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1467)
Q Consensus 721 SGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1467)
|||||||++||||++++|+|+|||||||+||+++++.+.+.+++. ..+++|+|+||||++.+..||+|++|++|++++.
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999998766543 3468999999999999999999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-58 Score=527.66 Aligned_cols=529 Identities=22% Similarity=0.283 Sum_probs=425.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 267 VRKVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSG 346 (1467)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (1467)
...+....+++.++..++++.+-.++.+..|+.+-.+-|-+-.. .+......+.++....++++.++...-.+...|++
T Consensus 13 ~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S-~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig 91 (580)
T COG4618 13 LLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPS-RSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIG 91 (580)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666788888888899999999999999887777654322 12223334444455556666666666667788999
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 347 MRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-----WFHLTWSLALQLFLAIGVLFGVVGLGAL 421 (1467)
Q Consensus 347 ~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-----~~~~~~~~~l~i~~~~~~L~~~lg~~~l 421 (1467)
.++-..|...+|.-+.+.+..........+.. .|.+.+..|.. .+....-.|+-+.++ +++.-.+|+.++
T Consensus 92 ~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~-fl~Hp~lG~~a~ 166 (580)
T COG4618 92 ERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVI-FLFHPWLGLIAL 166 (580)
T ss_pred HHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHHH-HHHHHHHHHHHH
Confidence 99999999999999875554332222222222 46677766543 233333345544433 344567899888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 422 PGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA 501 (1467)
Q Consensus 422 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~~ 501 (1467)
+|.++++.+..+|-. ..++-.++..+..-+|....+-.+.|..+|+..|..+...++..+...+.++..........
T Consensus 167 ~ga~iLv~la~ln~~---~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~ 243 (580)
T COG4618 167 AGAIILVVLALLNER---ATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNG 243 (580)
T ss_pred HHHHHHHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 888877777666643 34455566677788899999999999999999999999999999888888877666554433
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000481 502 -YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNN 580 (1467)
Q Consensus 502 -~~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~ 580 (1467)
+....-.+-..+-+.++-+|.+++.++.+|+|.+++.-.+....-.|+......+.++..|+.|.+|++++|.......
T Consensus 244 ~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~ 323 (580)
T COG4618 244 AFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA 323 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 2222222333445566667778888899999999999999999999999999999999999999999999997643322
Q ss_pred cccccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--
Q 000481 581 DDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658 (1467)
Q Consensus 581 ~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-- 658 (1467)
+..+.+.+.+.+.++++++.= ++.++|+|+|+||++++||-++||||||||||||.++|.|..+|.+|.|.++|
T Consensus 324 ---~~m~LP~P~g~L~Ve~l~~~P-Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~ 399 (580)
T COG4618 324 ---ERMPLPAPQGALSVERLTAAP-PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGAD 399 (580)
T ss_pred ---CCCCCCCCCceeeEeeeeecC-CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchh
Confidence 234455667889999999965 45568999999999999999999999999999999999999999999999987
Q ss_pred -----------eEEEEccCCcCCCCCHHHHHh-cCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 -----------SIAYVSQTSWIQSGSIRDNIL-YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 -----------~i~yv~Q~~~l~~~ti~eNi~-~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
+|||.||+-.+|.|||.|||. |+++.|.+++-++.+.++.++-|-.+|+|++|.||+.|.+|||||||
T Consensus 400 l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ 479 (580)
T COG4618 400 LRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ 479 (580)
T ss_pred hhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH
Confidence 599999999999999999998 77789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
||+||||+|.||.+++||||-|+||.+.+..+.+.+.....+|.|+|+||||++.+..+|+|.+|+||++...|+-+|++
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHH
Confidence 99999999999999999999999999999999877777777899999999999999999999999999999999999987
Q ss_pred hc
Q 000481 807 LA 808 (1467)
Q Consensus 807 ~~ 808 (1467)
++
T Consensus 560 a~ 561 (580)
T COG4618 560 AK 561 (580)
T ss_pred HH
Confidence 53
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=626.16 Aligned_cols=211 Identities=20% Similarity=0.262 Sum_probs=176.7
Q ss_pred eEEEEEEEEEeCC-----------CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC--CcceEEECCeeC
Q 000481 1215 RIELRQLKIRYRP-----------NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP--AGGSILIDGVDI 1281 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~-----------~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~--~~G~I~IDG~dI 1281 (1467)
.+.|+||++.++. +...+|+|||++|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6999999998741 223599999999999999999999999999999999999763 689999999886
Q ss_pred CCCCHHHHhhccEEeccCCccccc-chHHhcCCC------CCCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCC
Q 000481 1282 CSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPL------GLYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEG 1350 (1467)
Q Consensus 1282 ~~i~l~~LR~~i~iIpQdp~LF~g-TIR~NLdp~------~~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G 1350 (1467)
++ ...|+.++||+|++.++.. |++|||... ...+++ .+.++++..+|.+. .|+.+|..+
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 53 4567889999999988764 999998410 122333 36678888887653 466666443
Q ss_pred -CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchh-h-cccCEEEEEeC-
Q 000481 1351 -ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPT-V-IDSDMVMVLSY- 1425 (1467)
Q Consensus 1351 -~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVl~~- 1425 (1467)
..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. +|+|||+++|+++. + ..+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6799999999999999999999999999999999999999999998754 47999999999984 4 56999999996
Q ss_pred CEEEEecChh
Q 000481 1426 GKLLEYDEPS 1435 (1467)
Q Consensus 1426 G~ivE~g~p~ 1435 (1467)
|+++.+|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=591.04 Aligned_cols=199 Identities=19% Similarity=0.269 Sum_probs=164.9
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
.-|+++|++++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ +.+|
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 469999999999533 3599999999999999999999999999999999999999999999976 3579
Q ss_pred EEeccCCcccccchHHhcC-----CCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhc
Q 000481 1294 SIIPQEPTLFRGSVRTNLD-----PLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLL 1368 (1467)
Q Consensus 1294 ~iIpQdp~LF~gTIR~NLd-----p~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlL 1368 (1467)
+|+||++. ...++.+|.. .+...+++++.++|+..++.+... +. ....||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~------~~----~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQ----PMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh------cC----CccccCHHHHHHHHHHHHHh
Confidence 99999973 2224444421 122346788889999998863221 11 23479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEE-EecChhHH
Q 000481 1369 KRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLL-EYDEPSKL 1437 (1467)
Q Consensus 1369 r~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~iv-E~g~p~~L 1437 (1467)
++|++|||||||++||..+...+.+.+++. + .|||+|||+++.+.. ||+|++|++|+++ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999988888888764 4 599999999999976 9999999999998 45776654
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-56 Score=612.62 Aligned_cols=473 Identities=19% Similarity=0.190 Sum_probs=359.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 342 SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGA 420 (1467)
Q Consensus 342 ~~~~~~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~ 420 (1467)
..+.+.+.-..+...++++.++.+..++++.++|+++|+++.|++.+.+... .+..+....+.+++.+++++...++..
T Consensus 949 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~ 1028 (1490)
T TIGR01271 949 LVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIF 1028 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777788999999999999999999999999999999987544 344444455555555555544444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000481 421 LPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSE-AQLR 499 (1467)
Q Consensus 421 l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~-~~~~ 499 (1467)
++.+++++++..+..++.+..+..++.....+....+...|.++|+.+||+|++|+.|.++..+.-+...+.... ....
T Consensus 1029 l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1490)
T TIGR01271 1029 IAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTL 1108 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222222223333334444445555566677788899999999999999999998887776655432221111 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000481 500 KAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN 579 (1467)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~ 579 (1467)
..+...+..+...++..+.+++ ++....+++.+-.+++++..+..++..+...+..+..+.+|++||.+|++.++..
T Consensus 1109 ~wl~~~~~~i~~~~~~~~~~l~---~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~ 1185 (1490)
T TIGR01271 1109 RWFQMRIDIIFVFFFIAVTFIA---IGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEE 1185 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 1111111111111111111111 1112345566666677777788888888888999999999999999998654332
Q ss_pred Ccccc--------------c-ccc--cCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHH
Q 000481 580 NDDVR--------------R-ISL--QKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYA 642 (1467)
Q Consensus 580 ~~~~~--------------~-~~~--~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~ 642 (1467)
....+ . .++ .+..+.|+|+|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++
T Consensus 1186 ~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~l 1264 (1490)
T TIGR01271 1186 PRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSA 1264 (1490)
T ss_pred ccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 11100 0 000 1234679999999999764 4689999999999999999999999999999999
Q ss_pred HhCCCCCCCcEEEEcC-------------eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCC
Q 000481 643 ILGEIPKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGD 709 (1467)
Q Consensus 643 l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~ 709 (1467)
|+|+++ .+|+|.++| +|+||||+|.+|++||||||....+++++++.++++.|++.+.+..+|+|.
T Consensus 1265 L~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GL 1343 (1490)
T TIGR01271 1265 LLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKL 1343 (1490)
T ss_pred HhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCcccc
Confidence 999997 799999988 499999999999999999998777788999999999999999999999999
Q ss_pred CccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEE
Q 000481 710 LTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRIL 789 (1467)
Q Consensus 710 ~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~ 789 (1467)
+|.|||+|.+||||||||++||||++++|+|+|||||||+||+++++.|.+ .++...+++|+|+||||++.+..+|+|+
T Consensus 1344 dt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~-~L~~~~~~~TvI~IaHRl~ti~~~DrIl 1422 (1490)
T TIGR01271 1344 DFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRK-TLKQSFSNCTVILSEHRVEALLECQQFL 1422 (1490)
T ss_pred ccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999998854 5566678899999999999999999999
Q ss_pred EEeCCeEeEecChHHHHhcCchHHHHHHHhh
Q 000481 790 VLEGGQITQSGNYQELLLAGTAFEQLVNAHR 820 (1467)
Q Consensus 790 ~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~ 820 (1467)
+|++|+|++.|+|++|++.++.|.++++...
T Consensus 1423 vL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1423 VIEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred EEECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 9999999999999999988889999987544
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-58 Score=560.96 Aligned_cols=482 Identities=23% Similarity=0.328 Sum_probs=345.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcCCC
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l~~ 671 (1467)
.|.++|++++|+ ++++++|+|+++.+|+.+||||+||+||||||++|.|+..|++|+|...+ +++|++|++....
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 478999999995 36799999999999999999999999999999999999999999999987 7999999998875
Q ss_pred C-CHHHHHhcCCCCC---HHHHHHHHH------------------H-------hcchHHHhcCCCCCCccccCCCCccCh
Q 000481 672 G-SIRDNILYGKPMD---KARYDKAIK------------------A-------CALDKDINNFDHGDLTEIGQRGLNLSG 722 (1467)
Q Consensus 672 ~-ti~eNi~~g~~~~---~~~~~~~~~------------------~-------~~l~~~~~~l~~g~~t~ig~~g~~LSG 722 (1467)
. ||.|.+.-|...- ..+++++.. . ......+..|...+ + .....+|||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~--~-~~~~~~LSG 156 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD--E-DRPVSSLSG 156 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc--c-cCchhhcCH
Confidence 4 9999999875311 111222111 0 11112222232222 1 356678999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEe-Eec
Q 000481 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT-QSG 800 (1467)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~-~~G 800 (1467)
|||.||+|||||..+||+|||||||++||.++.+++-+.+ . ..+| |+|+|||+.+||.. |++|+.+++|++. +.|
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L-~-~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYL-K-RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHH-H-hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence 9999999999999999999999999999999999985543 2 3456 99999999999998 7999999999886 788
Q ss_pred ChHHHHhcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhh
Q 000481 801 NYQELLLAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEME 880 (1467)
Q Consensus 801 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 880 (1467)
+|+..++....-.+......+ + .+++.+
T Consensus 234 ny~~~~~~r~~~~~~~~~~~~--------------------------------------------------~--~~~~~~ 261 (530)
T COG0488 234 NYSSYLEQKAERLRQEAAAYE--------------------------------------------------K--QQKELA 261 (530)
T ss_pred CHHHHHHHHHHHHHHHHHHHH--------------------------------------------------H--HHHHHH
Confidence 888776542111000000000 0 000000
Q ss_pred cCcccHHHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 881 IGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAA 960 (1467)
Q Consensus 881 ~g~v~~~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~ 960 (1467)
....++.
T Consensus 262 -------~~~~~i~------------------------------------------------------------------ 268 (530)
T COG0488 262 -------KEQEWIR------------------------------------------------------------------ 268 (530)
T ss_pred -------HHHHHHH------------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000481 961 HLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVV 1040 (1467)
Q Consensus 961 ~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1040 (1467)
|+.
T Consensus 269 ------------------------------------r~~----------------------------------------- 271 (530)
T COG0488 269 ------------------------------------RGK----------------------------------------- 271 (530)
T ss_pred ------------------------------------HHH-----------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1041 AIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120 (1467)
Q Consensus 1041 ~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1467)
....+++
T Consensus 272 -------------~~~~~~k------------------------------------------------------------ 278 (530)
T COG0488 272 -------------AAASKAK------------------------------------------------------------ 278 (530)
T ss_pred -------------hccchHH------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh--hcCCCCCC
Q 000481 1121 LILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQF--MHIPPEPP 1198 (1467)
Q Consensus 1121 l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~--~~~~~e~~ 1198 (1467)
..+..+...+|+.+- ...|....
T Consensus 279 -------------------------------------------------------~a~sr~k~l~k~~~~~~~~~~~~~~ 303 (530)
T COG0488 279 -------------------------------------------------------KAKSRIKRLEKLEARLAEERPVEEG 303 (530)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHhhhhhccccccc
Confidence 000001111222211 00111100
Q ss_pred CCc-CCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEEC
Q 000481 1199 AIV-EDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILID 1277 (1467)
Q Consensus 1199 ~~~-~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~ID 1277 (1467)
... -...++..-..+--++++|+++.|.++ .++++++||.|++|++||||||+|+|||||+++|.|-..|.+|+|.+.
T Consensus 304 ~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g 382 (530)
T COG0488 304 KPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG 382 (530)
T ss_pred ccceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC
Confidence 000 000011101123469999999999655 569999999999999999999999999999999999999999999987
Q ss_pred CeeCCCCCHHHHhhccEEeccCC-cccc-cchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCC
Q 000481 1278 GVDICSMGLKDLRVKLSIIPQEP-TLFR-GSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWS 1354 (1467)
Q Consensus 1278 G~dI~~i~l~~LR~~i~iIpQdp-~LF~-gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS 1354 (1467)
- .-++||.+|+- .++. .|+-+++.... ...+.++...|.+.++..--. .++| ..||
T Consensus 383 ~-----------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~------~~~v----~~LS 441 (530)
T COG0488 383 E-----------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ------EKPV----GVLS 441 (530)
T ss_pred C-----------ceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH------hCch----hhcC
Confidence 4 24699999997 4443 38888885433 334788999999998865332 3344 3699
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEe-c
Q 000481 1355 AGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEY-D 1432 (1467)
Q Consensus 1355 ~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~-g 1432 (1467)
||||-|+.||+.++.+|.+|||||||++||.+|-..+.++|.++ ..|||+|+|+-..+.. |++|+++++ ++.++ |
T Consensus 442 GGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g 518 (530)
T COG0488 442 GGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEG 518 (530)
T ss_pred HhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCC
Confidence 99999999999999999999999999999999999999999874 4599999999999977 999999999 88888 7
Q ss_pred ChhHHhc
Q 000481 1433 EPSKLME 1439 (1467)
Q Consensus 1433 ~p~~Ll~ 1439 (1467)
.+++.++
T Consensus 519 ~y~~y~~ 525 (530)
T COG0488 519 GYEDYLE 525 (530)
T ss_pred CHHHHHH
Confidence 8887765
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=556.54 Aligned_cols=507 Identities=17% Similarity=0.174 Sum_probs=360.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 267 VRKVITNVYLKENIFIAICALLRTIAVVVG-PLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRS 345 (1467)
Q Consensus 267 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (1467)
+++.+++.+++.++...++.++..++.++. |++.+.++|..... ......+++++++..++ .....+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLLMAV----TLGSQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 456677778888888888888888888774 67778888754321 11111111111121121 22233445566
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 346 GMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLV 425 (1467)
Q Consensus 346 ~~~ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~ 425 (1467)
+.++...++..+|+|.++++...++++++|+++|++++|++.+..+...+..++...+.+++++++++..-+..+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 77777788888999999999999999999999999999999998755455566777777777777666655555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc--cHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 000481 426 LFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQS--WEEKFKSLIE----SRREKEFKWLSEAQLR 499 (1467)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~--~E~~f~~~i~----~~R~~E~~~l~~~~~~ 499 (1467)
++++...+...+.++.++..++.++..+++.+.++|.++|++++++.. .++.+.++.+ +.++...+..+ ..
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 232 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADT---FH 232 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHH---HH
Confidence 554545556667788888888889999999999999999999997432 2233333333 33332222111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000481 500 KAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELN 579 (1467)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~ 579 (1467)
.............++.+..+.+... ..+ +.+.+..+..++..+..|+..+...+..+.+++++.+|+.+++..++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~ 309 (547)
T PRK10522 233 LSAVNWSNIMMLGAIGLVFYMANSL-GWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKA 309 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 1111111001101111111111111 112 2233333333344467899999999999999999999999997544322
Q ss_pred CcccccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-
Q 000481 580 NDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG- 658 (1467)
Q Consensus 580 ~~~~~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g- 658 (1467)
+.. ...+ .+..+.++++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 310 ~~~-~~~~-~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 385 (547)
T PRK10522 310 EFP-RPQA-FPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (547)
T ss_pred ccc-cccc-cCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 111 1111 1112479999999999742 4799999999999999999999999999999999999999999999887
Q ss_pred ------------eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 ------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 ------------~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.++||+|+|.+|++|++|| +...++++.+++++.+++..++.. ++|. .+|.+|||||||
T Consensus 386 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~q 456 (547)
T PRK10522 386 PVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKK 456 (547)
T ss_pred ECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHH
Confidence 4999999999999999999 445667778888888877766542 3321 248899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeEe
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1467)
|++||||++++|+++|||||||+||+++++.+.+.+..... +++|+|+||||++.+..||+|++|++|++++.
T Consensus 457 Rl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 457 RLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999998776554332 58999999999999999999999999999976
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-58 Score=573.54 Aligned_cols=191 Identities=24% Similarity=0.311 Sum_probs=162.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
-++++|++++|.. ..|+++||+|++||.+||+|+||||||||+++|.|+.+|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 5999999999953 25999999999999999999999999999999999999999999986 1599
Q ss_pred EeccCCcc-cccchHHhcCCC-CCC-CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1295 IIPQEPTL-FRGSVRTNLDPL-GLY-SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1295 iIpQdp~L-F~gTIR~NLdp~-~~~-sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
|+||++.+ ++.|+++|+... ..+ .+..+.++++..++.+... .++ .+||||||||++|||||+++|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-------~~~----~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-------KNV----KDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-------CCc----ccCCHHHHHHHHHHHHHhcCC
Confidence 99999875 456999998521 112 2345677888888865433 233 369999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecC
Q 000481 1372 RILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDE 1433 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~ 1433 (1467)
+||||||||++||.++...+.+.|++.. .++|+|+|+|+++.+.. ||||++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 9999999999999999999999999764 37899999999999875 999999965 8877766
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=563.46 Aligned_cols=508 Identities=11% Similarity=0.045 Sum_probs=392.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhcccC---ccc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 901 LLCLGVLAQSGFVGLQAAATYWLAYAIQIP---KIT-S----GILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFS 972 (1467)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~---~~~-~----~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~ 972 (1467)
.+++.+++.++...+....+++.+..++.- +.. . ..++.+++++.++..+..++...+......+..+.+|+
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566677777777655421 111 1 11223333444455556666667777777888888888
Q ss_pred HHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Q 000481 973 GFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTF-VTWQVLVVAIFAMVAVRFV 1051 (1467)
Q Consensus 973 ~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 1051 (1467)
+.+++....++.|||. ++|++.+|+++|++.+...+...+..++..++.+++.++.++. .+|.+.++++...++..++
T Consensus 177 ~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i 255 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVV 255 (659)
T ss_pred HHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 8888888889999997 8899999999999999999988888888888888877777665 7888877777667777777
Q ss_pred HHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1052 QRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNL 1131 (1467)
Q Consensus 1052 ~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~ 1131 (1467)
.+++.+..+++.+......+...+.+.|.++|..+||+|+.++.+.+++.+..+...+..........++....+++...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 77777777777777777788899999999999999999999999999888887776666665555555555555544332
Q ss_pred HHHHH---HH-HHHHhcc----CcccHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCC-
Q 000481 1132 TLFTA---AL-FLVLIPR----GYVAPGL-VGLSLSY---AFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPP- 1198 (1467)
Q Consensus 1132 ~~~~~---~~-~~~~~~~----~~~~~g~-~g~~l~~---~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~- 1198 (1467)
..... .. ..++... |.++.|. ++..++| ..++..++..+...+.++.....+.+|+.++.+.+++..
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~ 415 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKS 415 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111 11 1122222 5677664 3434444 456678888999999999999999999999987543211
Q ss_pred ------CCcC--CC-----CCC-----C-CCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHH
Q 000481 1199 ------AIVE--DK-----RPP-----S-SWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTL 1259 (1467)
Q Consensus 1199 ------~~~~--~~-----~~~-----~-~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL 1259 (1467)
...+ +. +++ . .....+.|+++||+++|+.+ +++|+|+||+|++||++||+|+||||||||
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTL 494 (659)
T TIGR00954 416 GNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSL 494 (659)
T ss_pred ccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHH
Confidence 0000 00 000 0 00134679999999999643 469999999999999999999999999999
Q ss_pred HHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCC--------CCCCHHHHHHHHHHcCC
Q 000481 1260 ISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL--------GLYSDDEIWKALEKCQL 1331 (1467)
Q Consensus 1260 ~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~--------~~~sd~ei~~aL~~~~l 1331 (1467)
+++|.|+++|++|+|.+|+ |+++++|||+|.+|++|+|+|+... ...++++++++++.+++
T Consensus 495 l~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l 563 (659)
T TIGR00954 495 FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563 (659)
T ss_pred HHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence 9999999999999999875 6789999999999999999999521 23578899999999999
Q ss_pred chHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCc
Q 000481 1332 KTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRV 1411 (1467)
Q Consensus 1332 ~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl 1411 (1467)
.+++.. |.|+||..+ .+.+||||||||++||||++++|++||||||||+||+++++.+++.+++. ++|+|+||||+
T Consensus 564 ~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~ 639 (659)
T TIGR00954 564 THILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRK 639 (659)
T ss_pred HHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCch
Confidence 999877 999999876 56799999999999999999999999999999999999999999999874 89999999999
Q ss_pred hhhcccCEEEEEeC
Q 000481 1412 PTVIDSDMVMVLSY 1425 (1467)
Q Consensus 1412 ~ti~~~DrIlVl~~ 1425 (1467)
+++..||+|++|+.
T Consensus 640 ~~~~~~d~il~l~~ 653 (659)
T TIGR00954 640 SLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHhCCEEEEEeC
Confidence 99999999999974
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-56 Score=501.89 Aligned_cols=461 Identities=22% Similarity=0.294 Sum_probs=356.6
Q ss_pred HHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1467)
Q Consensus 351 ~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~~ 429 (1467)
..+.-..|.|.++|+..+..+..+|.+.--+..-.+.|+...++ +..+....+++.+..++++...||......++.++
T Consensus 15 r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~ 94 (497)
T COG5265 15 RVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVI 94 (497)
T ss_pred HHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 34445678899999988877788887765555444455544433 33445556888888888888888765444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 000481 430 CGLLNVPFAKILQKCQSEFMIAQDE-RLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQL----RKAYGT 504 (1467)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~d~-r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~----~~~~~~ 504 (1467)
+..+......-.+...++.|+..|. ......+.|-+-.++|.|+-|+.+..+.....+...+.-.+... ......
T Consensus 95 lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~ 174 (497)
T COG5265 95 LYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQT 174 (497)
T ss_pred HHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3222222222222233444444444 44567789999999999999987766655544443332222211 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Q 000481 505 VIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR 584 (1467)
Q Consensus 505 ~~~~~~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~ 584 (1467)
.++.. ........+...+..+.+|.|.....-+++.++..|+..++.....+.|++.-.++..+.+..+-...+..+
T Consensus 175 ~I~~~---~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pd 251 (497)
T COG5265 175 AIFST---GLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPD 251 (497)
T ss_pred HHHHH---HHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCC
Confidence 11111 111222233334456899999999999999999999999999999999999999999988765432221111
Q ss_pred ccccc-CCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCe----
Q 000481 585 RISLQ-KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---- 659 (1467)
Q Consensus 585 ~~~~~-~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~---- 659 (1467)
-.+.. ...+.|.|+|++|.|+++ +|+|+++||++++|+.+||||++|+||||++++|.++|++.+|.|.++|+
T Consensus 252 a~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~ 329 (497)
T COG5265 252 APPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRD 329 (497)
T ss_pred CccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHH
Confidence 11111 335679999999999874 68999999999999999999999999999999999999999999999983
Q ss_pred ---------EEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 660 ---------IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 660 ---------i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
||.|||+..|||+|+..||.+|++ ..+++...+++++++.+.++.+|+|++|.|||+|-.|||||||||+
T Consensus 330 vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrva 409 (497)
T COG5265 330 VTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVA 409 (497)
T ss_pred hHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHH
Confidence 999999999999999999999987 6788899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcC
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
+||+++++|+|++|||+|||||.+|++.| +..++...+|+|.++|+||++++-.||.|+||+||+|+|.|+|+||++.+
T Consensus 410 iar~ilk~p~il~~deatsaldt~te~~i-q~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~ 488 (497)
T COG5265 410 IARTILKNPPILILDEATSALDTHTEQAI-QAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAG 488 (497)
T ss_pred HHHHHhcCCCEEEEehhhhHhhhhHHHHH-HHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcC
Confidence 99999999999999999999999999998 55667777999999999999999999999999999999999999999999
Q ss_pred chHHHHHH
Q 000481 810 TAFEQLVN 817 (1467)
Q Consensus 810 ~~~~~~~~ 817 (1467)
|.|++++.
T Consensus 489 g~ya~mw~ 496 (497)
T COG5265 489 GLYAEMWR 496 (497)
T ss_pred ChHHHHhc
Confidence 99998863
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-54 Score=559.58 Aligned_cols=487 Identities=21% Similarity=0.281 Sum_probs=379.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHH
Q 000481 947 ASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAI 1026 (1467)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~ 1026 (1467)
+.+++.--..+...+.|.++...+-..++++.++..-.--...+.|+|+|-++.|.+.+++..++. ..+....++++.+
T Consensus 254 l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~-h~~w~~Plqi~~~ 332 (1381)
T KOG0054|consen 254 LQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFL-HLLWSAPLQIILA 332 (1381)
T ss_pred HHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 333333334455667888998999999999999998877777899999999999999999866543 3333444444444
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHH
Q 000481 1027 IGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDI 1106 (1467)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~ 1106 (1467)
+.++...--...++.+.+++++..++.+..+..+..++.....+..-....+|.++|+++||.|+||+.|.++-.+.-+.
T Consensus 333 l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~ 412 (1381)
T KOG0054|consen 333 LYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQK 412 (1381)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHH
Confidence 43333221112233344444555556555555666666666667777889999999999999999999999998887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000481 1107 DASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVER 1186 (1467)
Q Consensus 1107 ~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveR 1186 (1467)
..+.............+.......++.+++....++...+..+|..+-.++++.-.+..++..+-.....+-+..+|++|
T Consensus 413 El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~R 492 (1381)
T KOG0054|consen 413 ELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKR 492 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544333333333222222222222222222222234556777777777777777777787777888888888999999
Q ss_pred HHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhc
Q 000481 1187 IKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFR 1265 (1467)
Q Consensus 1187 i~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~r 1265 (1467)
+.+|+..++.++..... ...-+.+-.|+++|.+|++.++ .++.|+||||+|++||.+||||++|||||||+++|+|
T Consensus 493 i~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLG 569 (1381)
T KOG0054|consen 493 LKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILG 569 (1381)
T ss_pred HHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 99999765443322211 1111334579999999999763 4459999999999999999999999999999999999
Q ss_pred ccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccc
Q 000481 1266 LVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSS 1345 (1467)
Q Consensus 1266 l~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~ 1345 (1467)
-.+..+|++.++|. ++|+||.|.+|+|||||||-...+++++.-.++++.|+|+..++.+|.|=.|+
T Consensus 570 Em~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~Te 636 (1381)
T KOG0054|consen 570 EMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTE 636 (1381)
T ss_pred CcccccceEEEcCe-------------EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcce
Confidence 99999999999993 99999999999999999997555688999999999999999999999999999
Q ss_pred cccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEe
Q 000481 1346 VSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDA-ILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLS 1424 (1467)
Q Consensus 1346 v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~-~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~ 1424 (1467)
|||+|.||||||||||+||||+.++++|.+||+|-|+||+++.+ +.++.|+...+++|+|.|||.++.+.+||+|+||+
T Consensus 637 IGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~ 716 (1381)
T KOG0054|consen 637 IGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLK 716 (1381)
T ss_pred ecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEec
Confidence 99999999999999999999999999999999999999998854 56778888889999999999999999999999999
Q ss_pred CCEEEEecChhHHhccCChhHHHHHH
Q 000481 1425 YGKLLEYDEPSKLMETNSSFSKLVAE 1450 (1467)
Q Consensus 1425 ~G~ivE~g~p~~Ll~~~~~f~~lv~~ 1450 (1467)
+|+|+|.|+|+||++.++.|.++..+
T Consensus 717 ~G~I~~~Gty~el~~~~~~~~~l~~~ 742 (1381)
T KOG0054|consen 717 DGKIVESGTYEELLKSGGDFAELAHE 742 (1381)
T ss_pred CCeEecccCHHHHHhcchhHHHHhhc
Confidence 99999999999999988899888543
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-55 Score=520.05 Aligned_cols=442 Identities=25% Similarity=0.376 Sum_probs=335.9
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 659 (1467)
.-++++|++.+|+. .++|+|+||++.+||++|++|.||+|||||+|.|.|.++|++|+|.++|+
T Consensus 7 ~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 35889999999974 57999999999999999999999999999999999999999999999983
Q ss_pred -EEEEccCCcC-CCCCHHHHHhcCCCC-------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 660 -IAYVSQTSWI-QSGSIRDNILYGKPM-------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 660 -i~yv~Q~~~l-~~~ti~eNi~~g~~~-------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
|+.|.|+.-+ .+.||.|||.+|++. |..+.++..++. ++.+....+ ......+||+||||-|+|
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~-----l~~lg~~~~--~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAREL-----LARLGLDID--PDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHH-----HHHcCCCCC--hhhhhhhCCHHHHHHHHH
Confidence 9999999876 567999999998752 333333322221 111111111 235567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecCh-HHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY-QELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~-~~l~~~ 808 (1467)
|||+..+++|+|||||||+|+.+..+++|+.+.+...+|.++|+|||+++++.. ||+|.||+||+.+..++. .++
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~--- 233 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET--- 233 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC---
Confidence 999999999999999999999999999998776777789999999999999876 999999999999864321 000
Q ss_pred CchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCcccHHH
Q 000481 809 GTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGWKP 888 (1467)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~ 888 (1467)
..++-
T Consensus 234 -----------------------------------------------------------------~~~~l---------- 238 (500)
T COG1129 234 -----------------------------------------------------------------SEDEL---------- 238 (500)
T ss_pred -----------------------------------------------------------------CHHHH----------
Confidence 00000
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 889 FMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASK 968 (1467)
Q Consensus 889 y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~ 968 (1467)
.+.
T Consensus 239 ----v~~------------------------------------------------------------------------- 241 (500)
T COG1129 239 ----VRL------------------------------------------------------------------------- 241 (500)
T ss_pred ----HHH-------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000481 969 AFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAV 1048 (1467)
Q Consensus 969 ~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1467)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T COG1129 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1049 RFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEAL 1128 (1467)
Q Consensus 1049 ~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~ 1128 (1467)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T COG1129 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCC
Q 000481 1129 QNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPS 1208 (1467)
Q Consensus 1129 ~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~ 1208 (1467)
++ | | +..+..++ +. ..
T Consensus 242 -------------Mv--G---------------------------------------r--~~~~~~~~-~~-~~------ 257 (500)
T COG1129 242 -------------MV--G---------------------------------------R--ELEDLFPE-PP-EE------ 257 (500)
T ss_pred -------------hh--C---------------------------------------c--chhhhccc-cc-cc------
Confidence 00 0 0 00000000 00 00
Q ss_pred CCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH-
Q 000481 1209 SWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK- 1287 (1467)
Q Consensus 1209 ~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~- 1287 (1467)
-+..-.++++|++..- .++|+||++++||.+||.|--|||+|-++++|||.-++.+|+|.+||.++.--+++
T Consensus 258 -~~~~~~l~v~~l~~~~------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~ 330 (500)
T COG1129 258 -GIGEPVLEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRD 330 (500)
T ss_pred -CCCCcEEEEecCCCCC------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHH
Confidence 0011246777776431 58999999999999999999999999999999999999999999999988776655
Q ss_pred HHhhccEEeccCCc---cc-ccchHHhcCCC--CCCCHH-HHHHHHHHcCCchHHhhCC---CCcccccccCCCCCChhH
Q 000481 1288 DLRVKLSIIPQEPT---LF-RGSVRTNLDPL--GLYSDD-EIWKALEKCQLKTTISSLP---NKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~---LF-~gTIR~NLdp~--~~~sd~-ei~~aL~~~~l~~~i~~lp---~gLdt~v~e~G~nLS~GQ 1357 (1467)
..+..|+|||-|-- +| ..+|++|+..- ..++.. -+...-++....+++..+. .+.+.++ .+||||.
T Consensus 331 Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGN 406 (500)
T COG1129 331 AIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGN 406 (500)
T ss_pred HHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchh
Confidence 68999999998864 44 55999998421 111100 1222333333444555442 2334444 4799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhc-ccCEEEEEeCCEEEEecCh
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVI-DSDMVMVLSYGKLLEYDEP 1434 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~-~~DrIlVl~~G~ivE~g~p 1434 (1467)
+|+++|||.|..+|+||||||||.++|..+.+.|.+.|++.. +|.+||+|+-.++.+. -||||+||.+|+++..=+.
T Consensus 407 QQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 407 QQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred hhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecc
Confidence 999999999999999999999999999999999999999765 5799999999999998 5999999999999874333
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=533.12 Aligned_cols=504 Identities=16% Similarity=0.159 Sum_probs=365.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 278 ENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEEN-LQE-GLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMRSALMV 355 (1467)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~-~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~ 355 (1467)
.++..+++.++.+++.+..|++.+.+++.+...+.. ... .+.+++++++..++.++. .+...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~----~~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAI----KYLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 456677778888999999999999999976533211 111 112222233333333333 33344555555555555
Q ss_pred HHHHHHHc----CCccccCCCCHHHHHHHHHhHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000481 356 AVYQKQLK----LSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGA-LPGLVLFLI 429 (1467)
Q Consensus 356 ~i~~k~l~----l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~~~~~~~~~l~i~~~~~~L~~~lg~~~-l~gl~~~~~ 429 (1467)
.++++.++ .+...+++ ++|++.+++++|++.+.+... .+..+...++.++.+++.++..++|.. ++.++.+++
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 55555544 33334443 689999999999999987644 345555666777767777776555543 333334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000481 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRK-AYGTVIYW 508 (1467)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~~f~~~i~~~R~~E~~~l~~~~~~~-~~~~~~~~ 508 (1467)
...+...+.+.+.+..++.++..++.....+|.++|+++||+|+.|+.+.++.++.-++..+..++..... .+..+..+
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55566777888888999999999999999999999999999999998877766665555444333322222 22222222
Q ss_pred HHHH--HHHHHHHHHH-HHhCC----CCCcHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000481 509 MSPT--IISSVIFLGC-ALTGS----APLNASTIFT-VLA---TLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577 (1467)
Q Consensus 509 ~~~~--~~~~~~f~~~-~l~~~----~~Lt~~~~ft-~l~---l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e 577 (1467)
+... ......+++. ++... +.+|.+..+. +++ ++..+..|+..+.+.+..++++.++.+|+.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 1111122223 23222 5788887554 333 4677799999999999999999999999999996422
Q ss_pred CCC------ccccc-----------------ccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCC
Q 000481 578 LNN------DDVRR-----------------ISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGA 634 (1467)
Q Consensus 578 ~~~------~~~~~-----------------~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~Gs 634 (1467)
... +.... .......+.|+++|++|+|+++ +++|+|+||++++||+++|+|||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceEEECCCCEEEEECCCCC
Confidence 100 00000 0001123469999999999642 4799999999999999999999999
Q ss_pred ChHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcCCCCCHHHHHhcCC--------CCCHHHHHHHHHHhcchHHHhc
Q 000481 635 GKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGK--------PMDKARYDKAIKACALDKDINN 704 (1467)
Q Consensus 635 GKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l~~~ti~eNi~~g~--------~~~~~~~~~~~~~~~l~~~~~~ 704 (1467)
|||||+++|+|+++|++|+|.+++ +++||||+|+++++|++|||.++. ..++++.+++++.+++++.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999998864 699999999999999999999974 2456778899999999988877
Q ss_pred CCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc
Q 000481 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784 (1467)
Q Consensus 705 l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~ 784 (1467)
|.|++|..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+.+. . .|+|+|+||||++.++.
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~-~--~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCR-E--FGITLFSVSHRKSLWKY 644 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH-H--cCCEEEEEeCchHHHHh
Confidence 899999876 577999999999999999999999999999999999999999876443 3 38999999999999999
Q ss_pred CCEEEEEeC
Q 000481 785 VDRILVLEG 793 (1467)
Q Consensus 785 ~d~i~~l~~ 793 (1467)
||+|++|+.
T Consensus 645 ~d~il~l~~ 653 (659)
T TIGR00954 645 HEYLLYMDG 653 (659)
T ss_pred CCEEEEEeC
Confidence 999999963
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=497.20 Aligned_cols=239 Identities=38% Similarity=0.696 Sum_probs=230.3
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
|.|+|+|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.|||+|+.+++.+++|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999997666679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCE
Q 000481 1294 SIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373 (1467)
Q Consensus 1294 ~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~I 1373 (1467)
+||||+|.+|++|+++|++|++..+++++|++++.+++.+++..+|++||+.++|+|.+||+|||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999887889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHHHHHH
Q 000481 1374 LVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYWS 1453 (1467)
Q Consensus 1374 LiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~~~~~ 1453 (1467)
|||||||++||+++++.+++.|++.+++||+|+||||++++..||||+||++|+++|+|+|++|++..+.|++++.+...
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 239 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSDR 239 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhcch
Confidence 99999999999999999999999988899999999999999999999999999999999999999988999999987653
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-53 Score=489.38 Aligned_cols=440 Identities=24% Similarity=0.406 Sum_probs=344.2
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------- 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------- 659 (1467)
..+++++++..|+ ...+++||||+|++||+.|++|+||+|||||+++|.|.|+|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 3689999999997 357999999999999999999999999999999999999999999999983
Q ss_pred -EEEEccCCcCC-CCCHHHHHhcCCCC------CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 660 -IAYVSQTSWIQ-SGSIRDNILYGKPM------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 660 -i~yv~Q~~~l~-~~ti~eNi~~g~~~------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
||+|.|++-+. +.|+.|||..|.+- +. +++++..+..++.-|.+ ++..+||-|||||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCcchhHH
Confidence 99999998876 56999999999752 22 34455555555544433 5667899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHH
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
|.|-+|||++|+++|||||||-|-|...+++|+.+.+...+|+|||+|||+++++.. ||++-||.+|+++..-+ ..
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~--~~- 225 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD--PV- 225 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec--CC-
Confidence 999999999999999999999999999999998777777889999999999999876 99999999999864211 00
Q ss_pred hcCchHHHHHHHhhhhccCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCcccccccccCCcchHHHhhcCcccH
Q 000481 807 LAGTAFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLTEDEEMEIGDVGW 886 (1467)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~ 886 (1467)
++ .+.+|-
T Consensus 226 ---------------------------------------------------~~-------------~t~~el-------- 233 (501)
T COG3845 226 ---------------------------------------------------AE-------------TTEEEL-------- 233 (501)
T ss_pred ---------------------------------------------------CC-------------CCHHHH--------
Confidence 00 000000
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 887 KPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKA 966 (1467)
Q Consensus 887 ~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~ 966 (1467)
+
T Consensus 234 ---------------------a---------------------------------------------------------- 234 (501)
T COG3845 234 ---------------------A---------------------------------------------------------- 234 (501)
T ss_pred ---------------------H----------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000481 967 SKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMV 1046 (1467)
Q Consensus 967 s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 1046 (1467)
T Consensus 235 -------------------------------------------------------------------------------- 234 (501)
T COG3845 235 -------------------------------------------------------------------------------- 234 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 1047 AVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVE 1126 (1467)
Q Consensus 1047 ~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~ 1126 (1467)
++
T Consensus 235 -----------------~l------------------------------------------------------------- 236 (501)
T COG3845 235 -----------------EL------------------------------------------------------------- 236 (501)
T ss_pred -----------------HH-------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCC
Q 000481 1127 ALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRP 1206 (1467)
Q Consensus 1127 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~ 1206 (1467)
++.+ .+ ..+.+ +
T Consensus 237 ---------------MvG~-~v-------------------------------------------~~~~~--------~- 248 (501)
T COG3845 237 ---------------MVGR-EV-------------------------------------------VLRVV--------K- 248 (501)
T ss_pred ---------------hcCC-cc-------------------------------------------ccccc--------c-
Confidence 0000 00 00000 0
Q ss_pred CCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeC-CCCC
Q 000481 1207 PSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDI-CSMG 1285 (1467)
Q Consensus 1207 ~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI-~~i~ 1285 (1467)
++.-|.+--++++|+++.-+.+ -+.+++|||++++||.+||.|-.|-|-|-|+.+|.|+..+.+|+|.++|.|+ ...+
T Consensus 249 ~~~~pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~ 327 (501)
T COG3845 249 PPSTPGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLS 327 (501)
T ss_pred CCCCCCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCC
Confidence 0111223469999999976544 3589999999999999999999999999999999999999999999999998 6667
Q ss_pred HHHHh-hccEEeccCCc----ccccchHHhcC-------CCCC---CCHHHHHHHHHHcCCchHHhhC---CCCcccccc
Q 000481 1286 LKDLR-VKLSIIPQEPT----LFRGSVRTNLD-------PLGL---YSDDEIWKALEKCQLKTTISSL---PNKLDSSVS 1347 (1467)
Q Consensus 1286 l~~LR-~~i~iIpQdp~----LF~gTIR~NLd-------p~~~---~sd~ei~~aL~~~~l~~~i~~l---p~gLdt~v~ 1347 (1467)
....| ..+++||.|.. ..+-|+.+|+- ||.. .+-.++.+..++ .+++. +.+.++++
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~-----li~~fdVr~~~~~~~a- 401 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE-----LIEEFDVRAPSPDAPA- 401 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHH-----HHHHcCccCCCCCcch-
Confidence 66654 57999999984 45679999983 2221 122333333222 12221 23344444
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCcEEEEEccCchhhcc-cCEEEEEeC
Q 000481 1348 DEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQE-FSNCTVITVAHRVPTVID-SDMVMVLSY 1425 (1467)
Q Consensus 1348 e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~-~~~~TvI~IAHRl~ti~~-~DrIlVl~~ 1425 (1467)
.+||||+.|++-+||-+.++|++||..+||-+||..+.+.|++.|.+. -+|+.|+.|+-.|+.+.. ||||.||.+
T Consensus 402 ---~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~ 478 (501)
T COG3845 402 ---RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYE 478 (501)
T ss_pred ---hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeC
Confidence 579999999999999999999999999999999999888888887765 468999999999999976 999999999
Q ss_pred CEEEEecChhH
Q 000481 1426 GKLLEYDEPSK 1436 (1467)
Q Consensus 1426 G~ivE~g~p~~ 1436 (1467)
|+++....|++
T Consensus 479 Gri~~~~~~~~ 489 (501)
T COG3845 479 GRIVGIVPPEE 489 (501)
T ss_pred Cceeccccccc
Confidence 99998887775
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=472.54 Aligned_cols=254 Identities=21% Similarity=0.367 Sum_probs=218.6
Q ss_pred HHhhHHHHHHHhhcCCCCCCCCcC------C---CCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEE
Q 000481 1179 NYIISVERIKQFMHIPPEPPAIVE------D---KRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVV 1249 (1467)
Q Consensus 1179 ~~~~sveRi~~~~~~~~e~~~~~~------~---~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIV 1249 (1467)
..+++++|+.+|...+.|.....+ . ...+..||..|.|+|+|++++|+++.+++|+|+||+|++||++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 345677777777766554322111 1 0113469999999999999999765567999999999999999999
Q ss_pred cCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCC--CCCHHHHhhccEEeccCCcccccchHHhcC--C-CCCCCH
Q 000481 1250 GRTGSGKTTLISALFRLVE-----PAGGSILIDGVDIC--SMGLKDLRVKLSIIPQEPTLFRGSVRTNLD--P-LGLYSD 1319 (1467)
Q Consensus 1250 GrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~--~i~l~~LR~~i~iIpQdp~LF~gTIR~NLd--p-~~~~sd 1319 (1467)
||||||||||+++|+|+++ |++|+|.|||+|++ ++++.++|++++||||+|.+|++|+++|++ | +..+++
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~ 194 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND 194 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh
Confidence 9999999999999999997 57999999999997 566788999999999999999999999997 3 333555
Q ss_pred HHH-----HHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000481 1320 DEI-----WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRI 1394 (1467)
Q Consensus 1320 ~ei-----~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~ 1394 (1467)
++. .++++.+++. +++++.++++|.+||||||||+|||||++++|+||||||||++||+++++.+++.
T Consensus 195 ~~~~~~~~~~~l~~~~L~-------~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~ 267 (329)
T PRK14257 195 RKILEKIVEKSLKSAALW-------DEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL 267 (329)
T ss_pred HHHHHHHHHHHHHHcCCc-------chhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 554 4566777754 3466788999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1395 IRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1395 i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|++.++++|+|+||||++++.+ ||||+||++|+|+|.|+|+++.+
T Consensus 268 i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 268 ILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999889999999999999998 99999999999999999999987
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-46 Score=428.93 Aligned_cols=193 Identities=23% Similarity=0.336 Sum_probs=160.3
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|.|+||+|+|.++ +.++++++|-|.++++|++|||+|+|||||++++.+.+.|..|.|.-.-. .+++
T Consensus 389 vi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred eEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 49999999999755 47999999999999999999999999999999999999999998864321 1233
Q ss_pred Eecc---CCcccccchHHhcCC-CC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1295 IIPQ---EPTLFRGSVRTNLDP-LG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1295 iIpQ---dp~LF~gTIR~NLdp-~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
..-| |-..++-|.-+++.| +. +-..+++...|.++||.......| + ++||+|||.||+.||++++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p------~----~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP------M----SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc------h----hhcccccchhHHHHHHHhc
Confidence 2333 344566676677643 33 355678889999999986544433 3 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEe
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~ 1431 (1467)
.|.||||||||++||.+|-....++|.+. ..+||+|+|+...|.. +++|++.++|.+...
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 99999999999999999999999999864 4589999999999977 899999999998775
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=381.76 Aligned_cols=212 Identities=29% Similarity=0.479 Sum_probs=190.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC-CCHHHHhhcc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS-MGLKDLRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~-i~l~~LR~~i 1293 (1467)
-|+++|++.+|.. ..||||||++|++||.|.|+||||||||||+++|.++-+|++|+|.|||.++.. .++..+|+++
T Consensus 2 mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 4899999999963 359999999999999999999999999999999999999999999999987743 3788999999
Q ss_pred EEeccCCccccc-chHHhcC--CC--CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLD--PL--GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLd--p~--~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
|+|+|...||+- |+-+|+. |- ...+ ++.-.+.|+++||.+.....|. +|||||+||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHHH
Confidence 999999999976 9999984 21 1122 2345567899999998888876 5799999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||.-+|+|+++|||||+||+|.-..+.+++++.. .|.|.|+|||.+....+ +|||+.||+|+|+|.|+|+++..
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 99999999999999999999999999999998765 47899999999999988 99999999999999999999997
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=401.58 Aligned_cols=224 Identities=27% Similarity=0.454 Sum_probs=194.7
Q ss_pred EEEEEEEEEeCCC---CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC---HHHH
Q 000481 1216 IELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDL 1289 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~---~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~---l~~L 1289 (1467)
|+++||+..|... ...+|+||||+|++||..||+|+||||||||++++-|+-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 346999999999999999999999999999999999999999999999999888776 5567
Q ss_pred hhccEEeccCCcccc-cchHHhcC-CCC--CCCHHH----HHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1290 RVKLSIIPQEPTLFR-GSVRTNLD-PLG--LYSDDE----IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1290 R~~i~iIpQdp~LF~-gTIR~NLd-p~~--~~sd~e----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
|++||+|+|++.|++ -|+.+|+. |.. ..+.+| +.+.|+.+||.|....-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 899999999999998 69999995 432 244444 567889999888776655 47899999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
+|||||..+|+||+.|||||+||++|-+.|.+.|++.- -|-|+++|||.++.+++ ||||.||++|+|+|.|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999988887543 37899999999999988 9999999999999999999998
Q ss_pred c-c-CChhHHHHHH
Q 000481 1439 E-T-NSSFSKLVAE 1450 (1467)
Q Consensus 1439 ~-~-~~~f~~lv~~ 1450 (1467)
. + +..=++++.+
T Consensus 231 ~~Pk~~~t~~fi~~ 244 (339)
T COG1135 231 ANPKHAITQEFIGE 244 (339)
T ss_pred cCcchHHHHHHHHh
Confidence 7 3 3444555543
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=413.86 Aligned_cols=238 Identities=48% Similarity=0.821 Sum_probs=222.0
Q ss_pred CcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhh
Q 000481 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291 (1467)
Q Consensus 1212 ~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~ 1291 (1467)
..|.|+++|++++|+.....+|+|+||+|+|||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46789999999999654356999999999999999999999999999999999999999999999999999999889999
Q ss_pred ccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
+++++||+|.+|++|+++|+++.....+++++++++.+++.+.+..+|.|+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999875445567889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhc-cCChhHHHHH
Q 000481 1372 RILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME-TNSSFSKLVA 1449 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f~~lv~ 1449 (1467)
++|||||||++||+++.+.+.+.+++..+++|+|+++|+++.+..||||++|++|++++.|+++++.+ .++.|+.++.
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 254 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVR 254 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHh
Confidence 99999999999999999999999998767899999999999999999999999999999999999988 5677877654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=425.34 Aligned_cols=263 Identities=25% Similarity=0.370 Sum_probs=220.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCCCcEEEEeEEEEeCCC
Q 000481 528 APLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPE 607 (1467)
Q Consensus 528 ~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~~~~~~~~~~~~I~~~~~sf~~~~~ 607 (1467)
+++++..+|+++++|+.+..|+..+|..... .+|+.+|+..++.+...... ..+..+.|+++|++++|+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~nls~~y~~~ 93 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNFWYMNR 93 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--CCCcCceEEEEeeEEEecCC
Confidence 6789999999999999999999888765443 56899998766543211111 12344689999999999743
Q ss_pred CCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------------eEEEEccCC
Q 000481 608 LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------------SIAYVSQTS 667 (1467)
Q Consensus 608 ~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g---------------~i~yv~Q~~ 667 (1467)
..++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++| .++||||+|
T Consensus 94 -~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 94 -TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred -CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 3579999999999999999999999999999999999996 5799987643 599999999
Q ss_pred cCCCCCHHHHHhcCCC---CC-HH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000481 668 WIQSGSIRDNILYGKP---MD-KA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1467)
Q Consensus 668 ~l~~~ti~eNi~~g~~---~~-~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~ 739 (1467)
|++++|++|||.|+.. .+ ++ .+.++++.|++.+++ ++.++++|.+||||||||++||||++++|+
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARAl~~~p~ 245 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARAIALEPE 245 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999998743 22 22 266778888876554 367889999999999999999999999999
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|+||||||++||+++.+++ .+++....+++|+|+|||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 246 IlLLDEPts~LD~~~~~~i-~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 246 VLLMDEPTSALDPIATAKI-EELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred EEEEeCCcccCCHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999986 4566666678999999999999987 999999999999999999998754
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=403.22 Aligned_cols=234 Identities=32% Similarity=0.553 Sum_probs=216.2
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+.+..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57999999996544569999999999999999999999999999999999999999999999999998888889999999
Q ss_pred eccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEE
Q 000481 1296 IPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374 (1467)
Q Consensus 1296 IpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~IL 1374 (1467)
+||+|.+|+.|+++|+.... ..+.+++.++++..++.+.+..+|.|+++.....+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999997432 24566788888999999999999999999888889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHH
Q 000481 1375 VLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449 (1467)
Q Consensus 1375 iLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~ 1449 (1467)
||||||++||..+.+.+.+.|++..+++|+|+++|+++.+..||+|++|++|++++.|++++++++.+.|+.+++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 235 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHHh
Confidence 999999999999999999999987778999999999999988999999999999999999999988888877653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-44 Score=374.00 Aligned_cols=202 Identities=26% Similarity=0.437 Sum_probs=179.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.|+++|++.+|.. ..+|+|||++|++||.++|+|||||||||||++|.|+-+|++|+|.++| +
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4899999999973 4699999999999999999999999999999999999999999999998 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
+|+|+|+..||. .|+.|||..+. ... +++..+.++..+|.+..+.+| ..|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 789999999875 59999999873 222 244556777788877777666 4899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcC
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
||||..+|+++|+|||||||||+...++.+-......+|.|.|+|||.+.+.+. ||||+.|++|+|+++|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999887666667789999999999999998 7999999999999999999988654
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=395.94 Aligned_cols=221 Identities=57% Similarity=1.020 Sum_probs=209.6
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
|.|+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 57999999999975445699999999999999999999999999999999999999999999999999999989999999
Q ss_pred EEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCE
Q 000481 1294 SIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373 (1467)
Q Consensus 1294 ~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~I 1373 (1467)
+++||+|.+|++|+++|++++...+++++.++++..++.+++..+|.|+++...+.+.+||+|||||++||||++++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987766778889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecCh
Q 000481 1374 LVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEP 1434 (1467)
Q Consensus 1374 LiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p 1434 (1467)
|||||||++||+.+.+.+.+.|++..++.|+|+++|+++.+..||+|++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999987778999999999999999999999999999998864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=364.89 Aligned_cols=217 Identities=25% Similarity=0.461 Sum_probs=194.9
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCc-----ceEEECCeeCCC--CCH
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG-----GSILIDGVDICS--MGL 1286 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~-----G~I~IDG~dI~~--i~l 1286 (1467)
..++++|+++.|. ...+|+|||++|++++..|++|||||||||++++|-|+.+... |+|.+||.||-+ ++.
T Consensus 6 ~~~~~~~l~~yYg--~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYG--DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEEC--chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 3699999999996 3459999999999999999999999999999999999999875 999999999986 578
Q ss_pred HHHhhccEEeccCCcccccchHHhcCCC----CCC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
-.||+++|+|+|.|.-|+.||.||+... +.. =|+-+.++|+++.|+|.|.+ .| .+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL----~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RL----HKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---Hh----hCCccCCChhHHH
Confidence 9999999999999999999999999521 111 24557889999999998864 23 3456679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
||||||||.-+|+||+||||||+||+.+-..|.+.|.+..++-||++|||.+.-... +|+...+..|+++|+|.-+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999998889999999999998765 8999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
.
T Consensus 237 ~ 237 (253)
T COG1117 237 T 237 (253)
T ss_pred c
Confidence 6
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=395.74 Aligned_cols=193 Identities=20% Similarity=0.316 Sum_probs=165.9
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhc
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~ 1292 (1467)
...+++.+|+|.|.|+.++.+++++++++.-+++++||++|+||||+++++.+-.+|..|.+-+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 346999999999999887899999999999999999999999999999999999999999998887 889
Q ss_pred cEEeccCCcccccchHHhcCC-------CCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1293 LSIIPQEPTLFRGSVRTNLDP-------LGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1293 i~iIpQdp~LF~gTIR~NLdp-------~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
|++-.|.-+=| ..-|..+ +.-.+++|+.+.|...|+..-+...+ -..||||||-|+++|-
T Consensus 429 i~~f~Qhhvd~---l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~ 495 (582)
T KOG0062|consen 429 IKYFAQHHVDF---LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAA 495 (582)
T ss_pred ecchhHhhhhH---HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHH
Confidence 99999976643 2222211 11138999999999998876554332 1469999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEe
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~ 1431 (1467)
....+|.+|||||||+.||.++-..+-++|+. |+| -||+|+|+.+.|.. |+.++|.++|+|.-+
T Consensus 496 ~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~-F~G-GVv~VSHd~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 496 CTWNNPHLLVLDEPTNHLDRDSLGALAKALKN-FNG-GVVLVSHDEEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred HhcCCCcEEEecCCCccccHHHHHHHHHHHHh-cCC-cEEEEECcHHHHhhcCceeEEEcCCcEEee
Confidence 99999999999999999999999999999986 554 59999999999976 999999999999763
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=390.50 Aligned_cols=232 Identities=31% Similarity=0.535 Sum_probs=213.3
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+....++|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57999999996443359999999999999999999999999999999999999999999999999998888889999999
Q ss_pred eccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEE
Q 000481 1296 IPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374 (1467)
Q Consensus 1296 IpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~IL 1374 (1467)
+||+|.+|++|+++|+.... ..+.+++.+.++..++.+++..+|.|+++.......+||+|||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997432 34567778888999999999999999999988889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHH
Q 000481 1375 VLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 1447 (1467)
Q Consensus 1375 iLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~l 1447 (1467)
||||||++||..+...+.+.|++..++.|+|+++|+++.+..||+|++|++|++++.|+++++.+..+.|+.+
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhhh
Confidence 9999999999999999999999887889999999999999889999999999999999999998877766543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=370.85 Aligned_cols=216 Identities=29% Similarity=0.469 Sum_probs=193.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+|+|||++|. ...+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++|||
T Consensus 2 I~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 79999999996 3459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCccccc-chHHhcC--CC-CCCC----HHHHHHHHHHcCCc--hHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1296 IPQEPTLFRG-SVRTNLD--PL-GLYS----DDEIWKALEKCQLK--TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLd--p~-~~~s----d~ei~~aL~~~~l~--~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
|-|.--||+- ||.+|+. |- ..++ ++.+.+.|+.++|. ++....|. .|||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~-----------eLSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH-----------ELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch-----------hcCcchhhHHHHHH
Confidence 9999999976 9999994 31 1234 44567788999996 46677665 57999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhc-ccCEEEEEeCCEEEEecChhHHhc-cC
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVI-DSDMVMVLSYGKLLEYDEPSKLME-TN 1441 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~-~~DrIlVl~~G~ivE~g~p~~Ll~-~~ 1441 (1467)
||..+|+||+||||.++||+-|.+.+|+-+.+.- -++|+|+|||+++... -+|||.||++|+|+.+|+|+++++ +.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 9999999999999999999999999999887543 3799999999998865 499999999999999999999998 54
Q ss_pred Chh
Q 000481 1442 SSF 1444 (1467)
Q Consensus 1442 ~~f 1444 (1467)
..|
T Consensus 229 n~F 231 (309)
T COG1125 229 NDF 231 (309)
T ss_pred HHH
Confidence 444
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=380.50 Aligned_cols=207 Identities=56% Similarity=0.967 Sum_probs=189.2
Q ss_pred CCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH
Q 000481 1210 WPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL 1289 (1467)
Q Consensus 1210 wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L 1289 (1467)
||..+.++++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+..++
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999996543469999999999999999999999999999999999999999999999999998888889
Q ss_pred hhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1290 RVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1290 R~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
|++++|+||+|.+|++|+++|+..+..++++++.++++ +......||+|||||++||||+++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999997655556666666554 234466899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecCh
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEP 1434 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p 1434 (1467)
+|+||||||||++||+++.+.+.+.|++..+++|+|+++|+++.+..||+|++|++|++++.|+|
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999987778999999999999988999999999999999875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=387.29 Aligned_cols=233 Identities=32% Similarity=0.570 Sum_probs=214.7
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+.+ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++++.+...+|+.+++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999999633 359999999999999999999999999999999999999999999999999999988899999999
Q ss_pred eccCCcccccchHHhcCCC-CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEE
Q 000481 1296 IPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374 (1467)
Q Consensus 1296 IpQdp~LF~gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~IL 1374 (1467)
+||+|.+|++|+++|+... ...+++++.++++.+++.+.+..+|.|+++.+.....+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999632 235677888999999999999999999999999889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHHH
Q 000481 1375 VLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449 (1467)
Q Consensus 1375 iLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv~ 1449 (1467)
||||||++||+++.+.+.+.|++..++.|+|+++|+++.+..||++++|++|++++.|+++++.++.+.|+.++.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~ 234 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWK 234 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHHh
Confidence 999999999999999999999887668899999999999999999999999999999999999887777766543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=392.11 Aligned_cols=222 Identities=27% Similarity=0.369 Sum_probs=202.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.|+++|++++|+++ ..++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++| .|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 58999999999643 3569999999999999999999999999999999999998 799999987 48
Q ss_pred EEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000481 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1467)
Q Consensus 661 ~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~i 740 (1467)
+||||+|++|++|++||+....+.+++++.++++.+++...+..+|.+++|.++++|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999974445677889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHHHHH
Q 000481 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1467)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~~~ 818 (1467)
+||||||++||+++.+.+.+. +....+++|+|+|||+++.+..||+|++|++|++++.|+++++++.++.|++++..
T Consensus 160 lllDEpts~LD~~~~~~l~~~-l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKT-LKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred EEEECccccCCHHHHHHHHHH-HHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 999999999999999887654 44445689999999999999889999999999999999999999987777777654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=384.90 Aligned_cols=227 Identities=35% Similarity=0.601 Sum_probs=209.8
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
|.|+++|++++|.. ..++++|+||+|++||.+||+|++|||||||+++|.|+++|.+|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 46999999999963 23599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEeccCCcccccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCC
Q 000481 1294 SIIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372 (1467)
Q Consensus 1294 ~iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ 1372 (1467)
+|+||+|.+|++|+++|+..+. ...++++.++++.+++.+++..+|.|+++.++....+||+|||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999996432 345678888999999999999999999999988899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccC
Q 000481 1373 ILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETN 1441 (1467)
Q Consensus 1373 ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~ 1441 (1467)
+|||||||++||..+.+.+.+.|++..+++|+|+|+|+++.+..||+|++|++|++++.|++++++++.
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 999999999999999999999999876789999999999999889999999999999999998887643
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=384.61 Aligned_cols=233 Identities=34% Similarity=0.620 Sum_probs=211.8
Q ss_pred EEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1216 IELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
|+++|++++|... ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 5789999999642 246999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EeccCCcccccchHHhcCCC-CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCE
Q 000481 1295 IIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373 (1467)
Q Consensus 1295 iIpQdp~LF~gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~I 1373 (1467)
++||+|.+|+.|+++|+... .....+++.+.++..++.+++..+|.|+++.......+||+|||||++||||++++|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999643 23456678888999999999999999999999888899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHH
Q 000481 1374 LVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 1448 (1467)
Q Consensus 1374 LiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv 1448 (1467)
|||||||++||+.+.+.+.+.|++..+++|+|+++|+++.+..||+|++|++|++++.|+++++.+..+..+..+
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHh
Confidence 999999999999999999999998767899999999999998999999999999999999999987666555543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=375.13 Aligned_cols=213 Identities=30% Similarity=0.490 Sum_probs=188.4
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.++++|++++|. ..++|+|+||+|++||.++|+||||||||||+++|.|+..|.+|+|.+||.||.+++.+++-++++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 478999999996 456999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCc-ccccchHHhcC----C----CCCCC--HH-HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1295 IIPQEPT-LFRGSVRTNLD----P----LGLYS--DD-EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1295 iIpQdp~-LF~gTIR~NLd----p----~~~~s--d~-ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
||||++. -|.-|++|-+. | +...+ |+ .+.+||+.+++.++..+. + ..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-------~----~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-------V----DELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-------c----cccChhHHHHHH
Confidence 9999975 45558887762 3 22223 33 477889999998886542 2 359999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhh-cccCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTV-IDSDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti-~~~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||||.++|+||+|||||++||....-.+.+.+++.. ++.|+|+|.|+++.. +.||++++|++|+++..|+|+|.+.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999765 479999999999876 5699999999999999999999987
Q ss_pred c
Q 000481 1440 T 1440 (1467)
Q Consensus 1440 ~ 1440 (1467)
+
T Consensus 229 ~ 229 (258)
T COG1120 229 E 229 (258)
T ss_pred H
Confidence 4
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=376.53 Aligned_cols=219 Identities=34% Similarity=0.568 Sum_probs=201.2
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
|+|+++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46999999999964334699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEeccCCcccccchHHhcCCC-CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCC
Q 000481 1294 SIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372 (1467)
Q Consensus 1294 ~iIpQdp~LF~gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ 1372 (1467)
+++||+|.+|..|+++|+... ...+++++.++++..++.+.+...|.|+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999643 2245667888999999999999999999999998889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEec
Q 000481 1373 ILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1373 ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g 1432 (1467)
+|||||||++||.++.+.+.+.|++..+++|+|+++|+++.+.-||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999988779999999999998865
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=397.45 Aligned_cols=213 Identities=27% Similarity=0.444 Sum_probs=188.2
Q ss_pred EEEEEEEEEeCCC--CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH---Hh
Q 000481 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LR 1290 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~--~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~---LR 1290 (1467)
|+++|++++|+.+ ..++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred hccEEeccCCcccc-cchHHhcC-CC--CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1291 VKLSIIPQEPTLFR-GSVRTNLD-PL--GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~-gTIR~NLd-p~--~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
++|++|||++.+|. .|+++|+. |. ...+ ++++.++++.+++.+.....| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999996 69999995 21 1123 235678899999877655443 468999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||||+.+|+||+||||||+||++|.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+++|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998643 7899999999999976 99999999999999999999987
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=372.50 Aligned_cols=204 Identities=27% Similarity=0.393 Sum_probs=176.3
Q ss_pred EEEEeEEEEeCCC--CCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 595 VKIQEGNFSWDPE--LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~--~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
|+++++++.|... ....+|+|+||+|++||+.+|+|.||+|||||++++.++-.|++|+|.++|
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999753 235689999999999999999999999999999999999999999999998
Q ss_pred --eEEEEccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 659 --SIAYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 659 --~i~yv~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
+||+++|++.+++ .||.|||.|..+ ..+ +|+.+.++..+|.+..+ ..+.+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~-----------~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKAD-----------RYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------cCchhcCcchhhHH
Confidence 4999999999887 699999999754 222 34445555566654444 34569999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHH
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
+|||||..+|+|||.|||||||||+|.+.|.+.+.+.. .-|-|+++|||.++.++. |||+.||++|+++|.|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999987555432 348999999999999997 9999999999999999999988
Q ss_pred hcC
Q 000481 807 LAG 809 (1467)
Q Consensus 807 ~~~ 809 (1467)
..+
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 654
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=366.18 Aligned_cols=190 Identities=33% Similarity=0.470 Sum_probs=167.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------eEEEEcc
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------~i~yv~Q 665 (1467)
.+++++++.+|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++| .++||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 5789999999974 5799999999999999999999999999999999999999999999987 5899999
Q ss_pred CCcCCC-CCHHHHHhcCCCC-------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcC
Q 000481 666 TSWIQS-GSIRDNILYGKPM-------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1467)
Q Consensus 666 ~~~l~~-~ti~eNi~~g~~~-------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~ 737 (1467)
++-++. -||+|||.||.+. .+++.++.++.++|...-+.+| ..||||||||||||||++.+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHHhcC
Confidence 988765 5999999998653 1346777888888877666655 48999999999999999999
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeC--CeEe
Q 000481 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEG--GQIT 797 (1467)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~--G~i~ 797 (1467)
|+++||||||+|||+.|+.++-+.+.+.+. .++|+++|||++++.-. +|||++|.+ |+|.
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999877776654 57999999999998655 899999998 4453
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=394.29 Aligned_cols=218 Identities=24% Similarity=0.368 Sum_probs=184.1
Q ss_pred cceEEEEEEEEEeCCC---CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCC-----
Q 000481 1213 KGRIELRQLKIRYRPN---APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM----- 1284 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~---~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i----- 1284 (1467)
...|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 3469999999999643 23599999999999999999999999999999999999999999999999998753
Q ss_pred -----------CHHHHhhccEEeccCC--cccccchHHhcCCCC---CCCHHH----HHHHHHHcCCchHHhhCCCCccc
Q 000481 1285 -----------GLKDLRVKLSIIPQEP--TLFRGSVRTNLDPLG---LYSDDE----IWKALEKCQLKTTISSLPNKLDS 1344 (1467)
Q Consensus 1285 -----------~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd~e----i~~aL~~~~l~~~i~~lp~gLdt 1344 (1467)
....+|++++++||+| .+|++|+++|+.... ..++++ +.++++.+++.+ .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~ 168 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------S 168 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------h
Confidence 3567899999999998 689999999994211 123333 334455554431 2
Q ss_pred ccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhc-ccCEEEE
Q 000481 1345 SVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVI-DSDMVMV 1422 (1467)
Q Consensus 1345 ~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~-~~DrIlV 1422 (1467)
.....+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+. .||||+|
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 2345567899999999999999999999999999999999999999999998653 5889999999999885 5999999
Q ss_pred EeCCEEEEecChhHHhcc
Q 000481 1423 LSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1423 l~~G~ivE~g~p~~Ll~~ 1440 (1467)
|++|++++.|+|+++.+.
T Consensus 249 l~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 249 MDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EECCEEEEeCCHHHHhcC
Confidence 999999999999988753
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=369.53 Aligned_cols=209 Identities=25% Similarity=0.416 Sum_probs=183.0
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|..+ + ||+||||+|++||.+||+||||||||||+++++|+..|++|+|.++|.++++... |.+||
T Consensus 4 ~i~v~nl~v~y~~~-~-vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR-P-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE-e-eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999755 4 9999999999999999999999999999999999999999999999998876433 57999
Q ss_pred EeccCC---cccccchHHhcCCC--------CC---CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1295 IIPQEP---TLFRGSVRTNLDPL--------GL---YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1295 iIpQdp---~LF~gTIR~NLdp~--------~~---~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
||||.. .-|+-||+|-+... +. .+.+++.+||+++++.++.. -+++ .|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-------r~i~----~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-------RQIG----ELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-------Cccc----ccCcHHHHH
Confidence 999955 35888999987432 11 12478999999999998753 3454 499999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS-NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~-~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
+.|||||+++|++|+|||||++||+.+++.|.+.|++..+ ||||++|+|+++.+++ +|+|+.| ++++...|+|++.+
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhcc
Confidence 9999999999999999999999999999999999987664 8999999999999976 9999988 56788999999988
Q ss_pred cc
Q 000481 1439 ET 1440 (1467)
Q Consensus 1439 ~~ 1440 (1467)
..
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 73
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=377.78 Aligned_cols=211 Identities=30% Similarity=0.518 Sum_probs=185.5
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhccc-----CCCcceEEECCeeCCCCC--HHH
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV-----EPAGGSILIDGVDICSMG--LKD 1288 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~-----~~~~G~I~IDG~dI~~i~--l~~ 1288 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999964 35999999999999999999999999999999999999 999999999999998877 667
Q ss_pred HhhccEEeccCCcccccchHHhcCCC----CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1289 LRVKLSIIPQEPTLFRGSVRTNLDPL----GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1289 LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
+|++++++||+|.+|..|+++|+... +.. .++++.++++..++.+.....++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 88999999999999988999999531 111 13467788898888765544321 35799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
++||||++++|++|||||||++||.++.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+|+++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999987656899999999999875 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=357.78 Aligned_cols=223 Identities=26% Similarity=0.446 Sum_probs=186.5
Q ss_pred eEEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCC-CHHHHhh
Q 000481 1215 RIELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM-GLKDLRV 1291 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i-~l~~LR~ 1291 (1467)
.++++|+++.|+.+. .++|+||||+|.+||.+||||+||||||||.++|.|+.+|++|+|.+||.+.... .....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999996443 2499999999999999999999999999999999999999999999999776653 2346788
Q ss_pred ccEEeccCCcc-cc--cchHHhcC-CCCC----CCHHHHHHHHHHcCCchHH-hhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1292 KLSIIPQEPTL-FR--GSVRTNLD-PLGL----YSDDEIWKALEKCQLKTTI-SSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1292 ~i~iIpQdp~L-F~--gTIR~NLd-p~~~----~sd~ei~~aL~~~~l~~~i-~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
.+.+|+|||.- ++ -||++-|. |... -..++++++|+.+|+.+.. ...|. .||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~-----------eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPH-----------ELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCch-----------hcChhHHHHHH
Confidence 99999999962 22 25655552 3321 2345699999999997644 45554 48999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC--cEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSN--CTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~--~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||||.-+|++||+|||||+||.-..+.|.+.+.+..++ -|.|+|+|+++.+.. ||||+||++|+++|.++-+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999999999998876554 499999999999987 99999999999999999999987
Q ss_pred c-CChhHHHH
Q 000481 1440 T-NSSFSKLV 1448 (1467)
Q Consensus 1440 ~-~~~f~~lv 1448 (1467)
. .-.|.+..
T Consensus 232 ~~~h~ytr~L 241 (252)
T COG1124 232 HPSHPYTREL 241 (252)
T ss_pred CCccHHHHHH
Confidence 3 54554433
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=358.87 Aligned_cols=202 Identities=30% Similarity=0.401 Sum_probs=174.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
|+|+|+|+.|. ++.+++|+||+|++||+++++|||||||||+|++|.++++|++|+|.++| +||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999997 35799999999999999999999999999999999999999999999988 599
Q ss_pred EEccCCcCC-CCCHHHHHhcCCC---CCHH----HHHHHHHHhcchH--HHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 662 YVSQTSWIQ-SGSIRDNILYGKP---MDKA----RYDKAIKACALDK--DINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 662 yv~Q~~~l~-~~ti~eNi~~g~~---~~~~----~~~~~~~~~~l~~--~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
||-|+.-|| +.||.|||.+-.. ++++ +.++.++..+|++ ..+. ....|||||+|||.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~R-----------yP~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADR-----------YPHELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhc-----------CchhcCcchhhHHHHH
Confidence 999998876 5699999998532 4444 4556677777764 3333 4568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchh-hcCCEEEEEeCCeEeEecChHHHHhcC
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
|||..+|+|+|+||||+||||-+++.+-+....... -|+|+|+|||++++. +-+|||.+|++|+|++.|++++++.++
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999998665554332 489999999999885 459999999999999999999999865
Q ss_pred c
Q 000481 810 T 810 (1467)
Q Consensus 810 ~ 810 (1467)
.
T Consensus 228 a 228 (309)
T COG1125 228 A 228 (309)
T ss_pred c
Confidence 3
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=365.04 Aligned_cols=201 Identities=32% Similarity=0.527 Sum_probs=175.9
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------eEEE
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAY 662 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------~i~y 662 (1467)
..|+++|++|+|+.+ ++|+||||++++|++++|+||||||||||+|+|+|+++|.+|+|.+.| +|||
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 358999999999743 599999999999999999999999999999999999999999999865 4999
Q ss_pred EccC---CcCCCCCHHHHHhcCCCC-----------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 663 VSQT---SWIQSGSIRDNILYGKPM-----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 663 v~Q~---~~l~~~ti~eNi~~g~~~-----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
|||. .|-|..||+|-+..|... |.++++++++..++.+..+ .+..+|||||+|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-----------r~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-----------RQIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-----------CcccccCcHHHHHH
Confidence 9996 477899999999998421 3477888999988874333 45568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
-|||||.++||+|+|||||+++|+.++..+++.+.....+|+||++|||+++.+.. +|+|+.| |+++...|++++...
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 99999999999999999999999999999987655555569999999999998765 9999999 567889999999875
Q ss_pred c
Q 000481 808 A 808 (1467)
Q Consensus 808 ~ 808 (1467)
.
T Consensus 228 ~ 228 (254)
T COG1121 228 E 228 (254)
T ss_pred H
Confidence 4
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=369.52 Aligned_cols=214 Identities=31% Similarity=0.492 Sum_probs=193.4
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCC-CCCHHHHhhcc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC-SMGLKDLRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~-~i~l~~LR~~i 1293 (1467)
.|+++|++|+|.++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.|++ +.+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 48999999999877 67999999999999999999999999999999999999999999999999999 48899999999
Q ss_pred EEeccCC--cccccchHHhcCCC--C-CCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEP--TLFRGSVRTNLDPL--G-LYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp--~LF~gTIR~NLdp~--~-~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
|+|.|+| .+|..||.+.+... + ..+.+ .+.++|+.+++.++....| .+||||||||+|||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhh
Confidence 9999999 79999999998521 1 23444 4678999999988754444 36899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
.+|..+|+|||||||||+||+...+.+.+.+++..+ +.|+|+|+|+++.+.+ |||++||++|+++.+|+|+++.+.
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999998654 4799999999999998 999999999999999999999873
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=375.64 Aligned_cols=214 Identities=29% Similarity=0.462 Sum_probs=185.8
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH---HHHhhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l---~~LR~~ 1292 (1467)
|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999953 359999999999999999999999999999999999999999999999999988764 567899
Q ss_pred cEEeccCCccccc-chHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHH
Q 000481 1293 LSIIPQEPTLFRG-SVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCL 1363 (1467)
Q Consensus 1293 i~iIpQdp~LF~g-TIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~L 1363 (1467)
++++||+|.+|.+ |+++|+... ...+ ++++.++++.+++.++....| .+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP-----------AELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHH
Confidence 9999999999986 999998521 1123 234667788888765543322 4699999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1364 GRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1364 ARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
|||++++|+||||||||++||..+.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999987643 7899999999999876 999999999999999999998864
Q ss_pred CC
Q 000481 1441 NS 1442 (1467)
Q Consensus 1441 ~~ 1442 (1467)
..
T Consensus 228 ~~ 229 (235)
T cd03261 228 DD 229 (235)
T ss_pred CC
Confidence 43
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=351.83 Aligned_cols=216 Identities=28% Similarity=0.500 Sum_probs=190.5
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH---HHh
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLR 1290 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~---~LR 1290 (1467)
-.|++++|+++|. ...||+||||+|++||..||+|+||||||||++++.|+..|++|+|.|||.||.+++-+ .+|
T Consensus 7 ~~I~vr~v~~~fG--~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFG--DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecC--CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 3699999999994 34699999999999999999999999999999999999999999999999999998865 469
Q ss_pred hccEEeccCCccccc-chHHhcC-CCCCC---CHHHHH----HHHHHcCCchH-HhhCCCCcccccccCCCCCChhHHHH
Q 000481 1291 VKLSIIPQEPTLFRG-SVRTNLD-PLGLY---SDDEIW----KALEKCQLKTT-ISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~g-TIR~NLd-p~~~~---sd~ei~----~aL~~~~l~~~-i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
+++|+++|.--||+. ||+||+. |..+| +++++. .-|+.+||... ....|. .||||.|.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps-----------ELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPS-----------ELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCch-----------hhcchHHHH
Confidence 999999999999987 9999995 55544 445444 45788888877 344453 589999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
++||||+.-+|+||++|||||+||+-+-..+.+.|++.. -+.|+++|||+++++.. ||||+++.+|+|+-.|+|++|
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999888888887643 37899999999999987 799999999999999999999
Q ss_pred hccCC
Q 000481 1438 METNS 1442 (1467)
Q Consensus 1438 l~~~~ 1442 (1467)
.+.+.
T Consensus 234 ~~sd~ 238 (263)
T COG1127 234 LASDD 238 (263)
T ss_pred HhCCC
Confidence 99443
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=410.90 Aligned_cols=214 Identities=23% Similarity=0.304 Sum_probs=173.9
Q ss_pred cceEEEEEEEEE--------eCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC--CCcceEEECCeeCC
Q 000481 1213 KGRIELRQLKIR--------YRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE--PAGGSILIDGVDIC 1282 (1467)
Q Consensus 1213 ~g~I~f~nvs~~--------Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~--~~~G~I~IDG~dI~ 1282 (1467)
.+.++++||..- +..+....|+|||=-++||--.|++|.||||||||++.|.+-.. ..+|+|+|||.+..
T Consensus 779 ~~~~~~~~V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~ 858 (1391)
T KOG0065|consen 779 PLSLTFKDVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD 858 (1391)
T ss_pred cccccccceEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc
Confidence 345666666321 12244568999999999999999999999999999999997653 24899999999987
Q ss_pred CCCHHHHhhccEEeccCCcccc-cchHHhcCC------CCCCCHHH----HHHHHHHcCCchHHhhCCCCcccccccCCC
Q 000481 1283 SMGLKDLRVKLSIIPQEPTLFR-GSVRTNLDP------LGLYSDDE----IWKALEKCQLKTTISSLPNKLDSSVSDEGE 1351 (1467)
Q Consensus 1283 ~i~l~~LR~~i~iIpQdp~LF~-gTIR~NLdp------~~~~sd~e----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~ 1351 (1467)
+ +..++++|||.|++...+ -||||-|.. -.+.+++| +.++.+..+|.+.- |..||..|.
T Consensus 859 q---~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~ 928 (1391)
T KOG0065|consen 859 Q---ETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGS 928 (1391)
T ss_pred h---hhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCC
Confidence 5 778999999999886554 499999831 12345444 55667777766543 456888889
Q ss_pred CCChhHHHHHHHHHHhccCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhh--cccCEEEEEeC-C
Q 000481 1352 NWSAGQRQLFCLGRVLLKRN-RILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTV--IDSDMVMVLSY-G 1426 (1467)
Q Consensus 1352 nLS~GQrQrl~LARAlLr~~-~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti--~~~DrIlVl~~-G 1426 (1467)
.||..||.|+.||--|+.|| .||.||||||+||+++...|.+++|+.. .|+||++.-|.++.. ...|+++.|++ |
T Consensus 929 GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGG 1008 (1391)
T KOG0065|consen 929 GLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGG 1008 (1391)
T ss_pred CCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCC
Confidence 99999999999999999999 8999999999999999999999999754 699999999999854 56999999976 7
Q ss_pred EEEEecChhH
Q 000481 1427 KLLEYDEPSK 1436 (1467)
Q Consensus 1427 ~ivE~g~p~~ 1436 (1467)
+.+-+|++.+
T Consensus 1009 qtVY~G~lG~ 1018 (1391)
T KOG0065|consen 1009 QTVYFGPLGE 1018 (1391)
T ss_pred eEEEecCccc
Confidence 9999988644
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=375.41 Aligned_cols=216 Identities=21% Similarity=0.402 Sum_probs=191.4
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC---CCcceEEECCeeCCCCCHHHHhh
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE---PAGGSILIDGVDICSMGLKDLRV 1291 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~---~~~G~I~IDG~dI~~i~l~~LR~ 1291 (1467)
.|+++|++++|+. +++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.|+.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 3789999999953 469999999999999999999999999999999999985 68999999999999888888999
Q ss_pred ccEEeccCCcccccchHHhcCCCC---C------CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1292 KLSIIPQEPTLFRGSVRTNLDPLG---L------YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~gTIR~NLdp~~---~------~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
+++|+||+|.+|..|+++|+.... . ..++++.++++.+++.+++..+ ....+.+||+|||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHHH
Confidence 999999999999999999995321 1 1234577889999987655432 23455789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||||++++|++|+|||||++||..+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999987678999999999998865 99999999999999999999986
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=382.76 Aligned_cols=215 Identities=25% Similarity=0.410 Sum_probs=190.5
Q ss_pred eEEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1215 RIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
-|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999643 34599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEeccCCc--ccccchHHhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEPT--LFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp~--LF~gTIR~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
+++||+|. ++..|+++|+.... ..+ ++.+.++++.+++.++....| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999983 56779999995211 123 345788999999877655443 47999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhcc
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
||++++|+||||||||++||..+.+.+.+.|++..+ ++|+|+|||+++.+..||||++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999987643 7999999999999988999999999999999999998764
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=372.78 Aligned_cols=212 Identities=31% Similarity=0.485 Sum_probs=188.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+..++|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999953 35999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EeccCCcccccchHHhcCCCC---CCCHHHHHHHHHHcCCc-hHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccC
Q 000481 1295 IIPQEPTLFRGSVRTNLDPLG---LYSDDEIWKALEKCQLK-TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKR 1370 (1467)
Q Consensus 1295 iIpQdp~LF~gTIR~NLdp~~---~~sd~ei~~aL~~~~l~-~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~ 1370 (1467)
++||+|.+|+.|+++|+.... ...++++.+.++..++. +... ....+||+|||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT-----------RDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh-----------CCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999996321 12345677788888774 2222 23457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1371 NRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1371 ~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|++|||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 99999999999999999999999998753 37899999999999876 99999999999999999999987
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=371.66 Aligned_cols=217 Identities=31% Similarity=0.534 Sum_probs=197.7
Q ss_pred CcceEEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHh
Q 000481 1212 FKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290 (1467)
Q Consensus 1212 ~~g~I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR 1290 (1467)
..|.++++|++++|+.. ..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999643 24699999999999999999999999999999999999999999999999999888888889
Q ss_pred hccEEeccCCcccccchHHhcCC-CCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1291 VKLSIIPQEPTLFRGSVRTNLDP-LGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~gTIR~NLdp-~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
++++++||+|.+|++|+++|++. ......+++++..+..++.+++..+|.|+++.+.....+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999973 22334556677777788899999999899988888899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEE
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKL 1428 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~i 1428 (1467)
+|++|||||||++||+++.+.+.+.|++..+++|+|+|+|+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999987777999999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=366.34 Aligned_cols=201 Identities=26% Similarity=0.415 Sum_probs=177.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++|+|+ ++++|+|+||++++||+++|+|||||||||||++|+|.++|.+|+|.++| .+
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 478999999997 35799999999999999999999999999999999999999999999998 59
Q ss_pred EEEccCCcC-CCCCHHHHHhcCCC-----------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 661 AYVSQTSWI-QSGSIRDNILYGKP-----------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 661 ~yv~Q~~~l-~~~ti~eNi~~g~~-----------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
|||||++.. +..||+|-+.+|+. .|++.+.++++.+++.+..+ +...+|||||||||
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~-----------r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD-----------RPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc-----------CcccccChhHHHHH
Confidence 999999754 56799999999952 13345677788888876554 34568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchh-hcCCEEEEEeCCeEeEecChHHHH
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
.|||||+++|+|++||||||+||....-++++.+.+.. .+|+|+|+|+|+++.. ..||++++|++|+++..|+++|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999998766655 4689999999999886 569999999999999999999987
Q ss_pred hc
Q 000481 807 LA 808 (1467)
Q Consensus 807 ~~ 808 (1467)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 54
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=338.65 Aligned_cols=208 Identities=23% Similarity=0.394 Sum_probs=186.5
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH---Hhhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~---LR~~ 1292 (1467)
|+|+||+.+|+.+ +++|+||||+|++||.+=++|+|||||||++++|++...|++|+|.++|.|++++.-++ ||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999866 77999999999999999999999999999999999999999999999999999988665 8999
Q ss_pred cEEeccCCcccc-cchHHhcC-CCC--CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1293 LSIIPQEPTLFR-GSVRTNLD-PLG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1293 i~iIpQdp~LF~-gTIR~NLd-p~~--~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
||+|.||--|.. -|+.||+. |.. ..+ .+.+.++|+.+||.+-...+|. .|||||+||+|||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHH
Confidence 999999998775 49999985 332 123 3457789999999999999986 4799999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhccc-CEEEEEeCCEEEEecChh
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVIDS-DMVMVLSYGKLLEYDEPS 1435 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~-DrIlVl~~G~ivE~g~p~ 1435 (1467)
||+..+|++||-||||.|||+++...|.+.+.+.- .|.||++.||+.+.+.++ -|++.+++|+++..+.+.
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~g 222 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRG 222 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccccC
Confidence 99999999999999999999999999999987643 589999999999999885 689999999999887653
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=350.92 Aligned_cols=212 Identities=29% Similarity=0.465 Sum_probs=189.4
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC---HHHHhh
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDLRV 1291 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~---l~~LR~ 1291 (1467)
.|+++||+.+|+ +...+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|.++|.++.... ++++|.
T Consensus 3 ~i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 489999999996 4557999999999999999999999999999999999999999999999999999988 777899
Q ss_pred ccEEeccCCccccc-chHHhcC------------CCCCCCHH---HHHHHHHHcCCchHHhhCCCCcccccccCCCCCCh
Q 000481 1292 KLSIIPQEPTLFRG-SVRTNLD------------PLGLYSDD---EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSA 1355 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~g-TIR~NLd------------p~~~~sd~---ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~ 1355 (1467)
+||+|+|.|.|-.. |+-+|+. .|+.++.+ +..+||+++|+.+..-. +.++|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCCc
Confidence 99999999998865 8899972 13344444 46788999999887543 3457999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1356 GQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1356 GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
||+||++|||||.++|+|++-|||||+||+++.+.|.+.|++.. .|.|||+.-|.++..+. ||||+-|++|+|+-.|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999998754 57899999999999976 9999999999999999
Q ss_pred ChhHHh
Q 000481 1433 EPSKLM 1438 (1467)
Q Consensus 1433 ~p~~Ll 1438 (1467)
++.||-
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 999964
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=354.76 Aligned_cols=204 Identities=29% Similarity=0.422 Sum_probs=177.0
Q ss_pred EEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH----H
Q 000481 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD----L 1289 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~----L 1289 (1467)
++++||+..|..+. ..+|+|+||+|++||.|+|+||||||||||+++|-++-.|++|.|.++|.|++.++-++ .
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996443 35999999999999999999999999999999999999999999999999999998544 3
Q ss_pred hhccEEeccCCccccc-chHHhcC-C--CCCCC----HHHHHHHHHHcCCchHHh-hCCCCcccccccCCCCCChhHHHH
Q 000481 1290 RVKLSIIPQEPTLFRG-SVRTNLD-P--LGLYS----DDEIWKALEKCQLKTTIS-SLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1290 R~~i~iIpQdp~LF~g-TIR~NLd-p--~~~~s----d~ei~~aL~~~~l~~~i~-~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
|++||+|+|+..|++. |++||+. | +.... ++...+.++.+++.+... ..| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 6779999999999876 9999985 2 22222 445667777888876655 434 3589999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcccCEEEEEeCCEEEE
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVIDSDMVMVLSYGKLLE 1430 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE 1430 (1467)
+||||||+.+|+|++.||||++||.+|.+.|.+.+++.- .++|+|+|||+......|||++.|.+|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999874 3789999999999999999999999999543
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=379.24 Aligned_cols=216 Identities=25% Similarity=0.426 Sum_probs=191.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
-++++||+++|+...+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|++|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999644456999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EeccCC--cccccchHHhcCCCC---CCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1295 IIPQEP--TLFRGSVRTNLDPLG---LYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1295 iIpQdp--~LF~gTIR~NLdp~~---~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
|+||+| .+++.|+++||.... ..++ +++.++++.+++.++....|. .||+|||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----------~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcc-----------cCCHHHHHHHHHHH
Confidence 999998 466789999995311 1232 447788888898877665543 68999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccC
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETN 1441 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~ 1441 (1467)
||+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+..||+|++|++|++++.|+++++.+..
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCH
Confidence 99999999999999999999999999999997653 78999999999999889999999999999999999987643
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=367.68 Aligned_cols=210 Identities=24% Similarity=0.369 Sum_probs=182.7
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++||+++|+.+..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++... ..+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5799999999643246999999999999999999999999999999999999999999999999997643 667889999
Q ss_pred eccCCccc-ccchHHhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLF-RGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF-~gTIR~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+| ..|+++|+.... ..+ ++++.++++..++.+.. ++.+ .+||+|||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NKRA----RTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hChh----hhCCHHHHHHHHHHHHH
Confidence 99999998 579999985211 112 24567788888875543 2222 46999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
+++|++|||||||++||+.+.+.+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999987777999999999999976 999999999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=388.33 Aligned_cols=213 Identities=25% Similarity=0.409 Sum_probs=186.2
Q ss_pred EEEEEEEEEeCC--CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH---Hh
Q 000481 1216 IELRQLKIRYRP--NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LR 1290 (1467)
Q Consensus 1216 I~f~nvs~~Y~~--~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~---LR 1290 (1467)
|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999962 2346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred hccEEeccCCcccc-cchHHhcCCC---CCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1291 VKLSIIPQEPTLFR-GSVRTNLDPL---GLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~-gTIR~NLdp~---~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
++|+|+||+|.+|. .|+++|+... ...++ +++.++++..++.+..... ..+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY-----------PAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999986 6999999521 11222 3567788888876554332 2469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||||+++|+||+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998643 7899999999999876 99999999999999999999987
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=370.01 Aligned_cols=219 Identities=41% Similarity=0.710 Sum_probs=197.2
Q ss_pred CCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEccCCcC
Q 000481 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI 669 (1467)
Q Consensus 590 ~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l 669 (1467)
.....|+++|+++.+ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.|+|++|++++
T Consensus 35 ~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l 109 (282)
T cd03291 35 SDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWI 109 (282)
T ss_pred CCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccc
Confidence 345679999999962 369999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCc
Q 000481 670 QSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1467)
Q Consensus 670 ~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~sa 749 (1467)
++.|++||+.++....+.++.+.++++++.+.+..++.+.++.+++++.+||||||||++||||++++|+++||||||++
T Consensus 110 ~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~g 189 (282)
T cd03291 110 MPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189 (282)
T ss_pred cccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 99999999999865555567778888899888999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHH
Q 000481 750 VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813 (1467)
Q Consensus 750 lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~ 813 (1467)
||+.+.+.+.+.++....+++|+|++||+++.+..||++++|++|++++.|+++++......+.
T Consensus 190 LD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 253 (282)
T cd03291 190 LDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFS 253 (282)
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHH
Confidence 9999998887766555456899999999999998899999999999999999999876544343
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=371.19 Aligned_cols=219 Identities=25% Similarity=0.377 Sum_probs=194.9
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhc
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~ 1292 (1467)
.+.|+++|++++ + .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+|| +
T Consensus 37 ~~~l~i~nls~~---~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLV---G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEe---c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 457999999995 2 3599999999999999999999999999999999999999999999998 4
Q ss_pred cEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCC
Q 000481 1293 LSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372 (1467)
Q Consensus 1293 i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ 1372 (1467)
++|+||+|.+|++|+++|+.......+.++.++++.+++.+.+..+|.++++.+++.+.+||+|||||++||||++++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997432344556778888899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccCChhHHHH
Q 000481 1373 ILVLDEANASIDSATDAILQRI-IRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 1448 (1467)
Q Consensus 1373 ILiLDEaTs~lD~~Te~~Iq~~-i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv 1448 (1467)
||||||||++||+++...+.+. +++..+++|||+|+|+++.+..||+|++|++|+++++|+++++.+....|.+-+
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHHHHH
Confidence 9999999999999998877664 455556899999999999998899999999999999999999987555554433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=361.53 Aligned_cols=199 Identities=27% Similarity=0.454 Sum_probs=181.8
Q ss_pred EEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhc
Q 000481 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~ 1292 (1467)
|+++||+++|++.. +++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999996542 3699999999999999999999999999999999999999999999999 6
Q ss_pred cEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCC
Q 000481 1293 LSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372 (1467)
Q Consensus 1293 i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ 1372 (1467)
|+|+||+|.+|++|+++|+......++++.+++++.+++.+++..+|.|+++.+.+.+.+||+|||||++||||++++|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997654556778889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH-HHHHHc-CCcEEEEEccCchhhcccCEEEEEeCCE
Q 000481 1373 ILVLDEANASIDSATDAILQR-IIRQEF-SNCTVITVAHRVPTVIDSDMVMVLSYGK 1427 (1467)
Q Consensus 1373 ILiLDEaTs~lD~~Te~~Iq~-~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVl~~G~ 1427 (1467)
+++|||||++||.++.+.+.+ .+++.. +++|||+++|+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999998776655 666543 3689999999999998999999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=375.94 Aligned_cols=215 Identities=26% Similarity=0.437 Sum_probs=192.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++.+|.... +|+|+|++|+.||.++++||||||||||+++|.|+.+|++|+|.|||.|++++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 599999999996433 999999999999999999999999999999999999999999999999999999886 7899
Q ss_pred EeccCCccccc-chHHhcC-CCC--C----CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFRG-SVRTNLD-PLG--L----YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLd-p~~--~----~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
+|+|+..||+- ||++||. |.. . --++++.++++..++.+.++..|. .||||||||+|||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHH
Confidence 99999999976 9999995 221 1 125678899999999999888876 479999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cCC
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNS 1442 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~~ 1442 (1467)
|+++|++++||||.|+||+.....+...|++..+ +.|+|.|||+....+. +|||.||++|+|.+.|+|.|+.+ +.+
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999998888887776433 6899999999988876 99999999999999999999997 555
Q ss_pred hh
Q 000481 1443 SF 1444 (1467)
Q Consensus 1443 ~f 1444 (1467)
.|
T Consensus 228 ~f 229 (338)
T COG3839 228 LF 229 (338)
T ss_pred hh
Confidence 54
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=345.99 Aligned_cols=205 Identities=27% Similarity=0.435 Sum_probs=178.7
Q ss_pred CCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
...|++++++++|.. +.+++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+.|
T Consensus 6 ~~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 457999999999963 5799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEccCCcCCCC-CHHHHHhcCC----CCCHHHHHH----HHHHhcchHH-HhcCCCCCCccccCCCCccChHHH
Q 000481 659 ---SIAYVSQTSWIQSG-SIRDNILYGK----PMDKARYDK----AIKACALDKD-INNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 ---~i~yv~Q~~~l~~~-ti~eNi~~g~----~~~~~~~~~----~~~~~~l~~~-~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
++|+++|+.-||+. ||+||+.|.. ...++.+++ -+++++|..+ .+.+| .+||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHH
Confidence 49999999999976 9999999953 244544443 4677888877 55555 58999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc--CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecCh
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~--~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~ 802 (1467)
.|+|||||+..||+|+++|||||+|||.+...+ ++++..+. -|-|+|+|||+++.+.. ||+|+++.||+|...|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 999999999999999999999999999998765 56665543 37899999999999876 799999999999999999
Q ss_pred HHHHhcCch
Q 000481 803 QELLLAGTA 811 (1467)
Q Consensus 803 ~~l~~~~~~ 811 (1467)
+|+.+.+..
T Consensus 231 ~el~~sd~P 239 (263)
T COG1127 231 EELLASDDP 239 (263)
T ss_pred HHHHhCCCH
Confidence 999887543
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=372.72 Aligned_cols=219 Identities=27% Similarity=0.451 Sum_probs=190.4
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CC
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MG 1285 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~ 1285 (1467)
.+.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 567999999999963 359999999999999999999999999999999999986 589999999999863 45
Q ss_pred HHHHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1286 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
...+|++++|+||+|.+|..|+++|+... +..+ +++++++++.+++.+.+.. .......+||+||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHHH
Confidence 66789999999999999999999999631 1122 3457788888887554322 2334556899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
|||++||||++++|+||||||||++||.++.+.+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999865 99999999999999999999
Q ss_pred Hhcc
Q 000481 1437 LMET 1440 (1467)
Q Consensus 1437 Ll~~ 1440 (1467)
+.+.
T Consensus 242 ~~~~ 245 (260)
T PRK10744 242 IFTK 245 (260)
T ss_pred HHhC
Confidence 9873
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=343.35 Aligned_cols=206 Identities=27% Similarity=0.408 Sum_probs=180.0
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCC-----cEEEEcC---------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS-----GTVNLYG--------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~-----G~i~~~g--------- 658 (1467)
..++++|+++.|.. +.+|+|||++|++++++|++|||||||||||+++.+..+..+ |+|.++|
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 46899999999973 569999999999999999999999999999999999888765 8998877
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCCC---C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~~---~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
+||+|+|.|.-|..||+|||.||... . ++.+++.++.++|.+.... .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 49999999999999999999999531 1 3457778888888765542 23367788999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||+.-+|+|+|||||||||||.+..+| ++++..+.++-|+|+|||+++...+ +|+..++.+|+++|.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999999999999999999999999999887 6677777788899999999998877 69999999999999999998
Q ss_pred HHhcC
Q 000481 805 LLLAG 809 (1467)
Q Consensus 805 l~~~~ 809 (1467)
+..++
T Consensus 235 iF~~P 239 (253)
T COG1117 235 IFTNP 239 (253)
T ss_pred hhcCc
Confidence 87543
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=386.10 Aligned_cols=216 Identities=24% Similarity=0.386 Sum_probs=189.2
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+.+ ..+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++.+++.+ +++|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999423 4599999999999999999999999999999999999999999999999999988765 47899
Q ss_pred EeccCCcccc-cchHHhcCC-CC--CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFR-GSVRTNLDP-LG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~-gTIR~NLdp-~~--~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
+|||++.+|. .|+++|+.. .. ..+ ++++.++++.+++.++....|. +||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----------~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR-----------ELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh-----------hCCHHHHHHHHHHHH
Confidence 9999999996 499999952 11 123 2457788999999877666553 689999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cCC
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNS 1442 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~~ 1442 (1467)
|+++|++|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+ +..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999987643 7899999999998865 99999999999999999999987 444
Q ss_pred hh
Q 000481 1443 SF 1444 (1467)
Q Consensus 1443 ~f 1444 (1467)
.|
T Consensus 229 ~~ 230 (356)
T PRK11650 229 TF 230 (356)
T ss_pred HH
Confidence 44
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=374.68 Aligned_cols=202 Identities=32% Similarity=0.414 Sum_probs=178.9
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~y 662 (1467)
.|+++|++.+|.+. .+++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.++| .||+
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999642 289999999999999999999999999999999999999999999988 4999
Q ss_pred EccCCcCC-CCCHHHHHhcCCCCC-------HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQ-SGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~-~~ti~eNi~~g~~~~-------~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
|+|+.-|+ ..||+|||.||.... +++++++++..++++.++.. ...||||||||||||||+
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~-----------P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRK-----------PLQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcC-----------cccCChhhHHHHHHHHHH
Confidence 99998876 569999999996532 46788889999998888764 458999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHhcC
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
.++|+++|||||+|+||++....+..++.+... -+.|+|+|||+..++. -+|||+||++|+|.+.|++.|+.++.
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 999999999999999999999887666554332 3789999999987765 59999999999999999999998764
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=376.38 Aligned_cols=212 Identities=26% Similarity=0.403 Sum_probs=187.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
-|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999633 45999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EeccCC--cccccchHHhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1295 IIPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1295 iIpQdp--~LF~gTIR~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
|+||+| .+|..|+++|+.... ..+ ++++.++++.+++.+.....|. .||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh-----------hCCHHHHHHHHHHH
Confidence 999998 688899999996211 122 3467888999998776555443 68999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|+|+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999998764 47899999999999865 9999999999999999997653
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=378.27 Aligned_cols=213 Identities=29% Similarity=0.459 Sum_probs=184.8
Q ss_pred EEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC--HHHHh
Q 000481 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG--LKDLR 1290 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~--l~~LR 1290 (1467)
|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 89999999996432 36999999999999999999999999999999999999999999999999998754 46789
Q ss_pred hccEEeccCC--cccccchHHhcCCCC---CCCH----HHHHHHHHHcCCc--hHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1291 VKLSIIPQEP--TLFRGSVRTNLDPLG---LYSD----DEIWKALEKCQLK--TTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1291 ~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd----~ei~~aL~~~~l~--~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
++++|+||+| .+|+.|+++|+.... ..++ +.+.++++.+++. +. .......|||||||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~~LSgGq~q 151 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDY-----------KDKSPFELSGGQKR 151 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhh-----------ccCCcccCCHHHHH
Confidence 9999999998 578899999995211 1233 3467788888875 22 12234579999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
|++|||||+.+|+||||||||++||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|++++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999987643 7899999999999864 99999999999999999999
Q ss_pred Hhc
Q 000481 1437 LME 1439 (1467)
Q Consensus 1437 Ll~ 1439 (1467)
+++
T Consensus 232 ~~~ 234 (287)
T PRK13637 232 VFK 234 (287)
T ss_pred HHh
Confidence 875
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=371.54 Aligned_cols=216 Identities=25% Similarity=0.461 Sum_probs=188.0
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~l~ 1287 (1467)
.|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999953 359999999999999999999999999999999999975 589999999999975 3456
Q ss_pred HHhhccEEeccCCcccccchHHhcCC----CCC----CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDP----LGL----YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp----~~~----~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++|+||+|.+|.+|+++|+.. .+. ..++++.++++.+++.+.+.. .......+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHHH
Confidence 78899999999999999999999952 111 123567788888888665432 223445689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|+||||||||++||..+.+.+.+.|++..+++|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999999999999998
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 237 ~ 237 (253)
T PRK14242 237 T 237 (253)
T ss_pred c
Confidence 6
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=377.93 Aligned_cols=215 Identities=24% Similarity=0.403 Sum_probs=183.2
Q ss_pred eEEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCC----CHH
Q 000481 1215 RIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM----GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i----~l~ 1287 (1467)
.|+++|++++|+++. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 3699999999999999999999999999999999999999999999999999764 346
Q ss_pred HHhhccEEeccCC--cccccchHHhcCCC--C-CCCH----HHHHHHHHHcCCc-hHHhhCCCCcccccccCCCCCChhH
Q 000481 1288 DLRVKLSIIPQEP--TLFRGSVRTNLDPL--G-LYSD----DEIWKALEKCQLK-TTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp--~LF~gTIR~NLdp~--~-~~sd----~ei~~aL~~~~l~-~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
.+|++|+|+||+| .+|..|+++|+... . ..+. +.+.++++.+++. +. ......+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~~LSgGq 150 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV-----------MSQSPFQMSGGQ 150 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh-----------hhCCcccCCHHH
Confidence 7899999999998 58889999999521 1 1233 3345566666653 22 123456799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecCh
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEP 1434 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p 1434 (1467)
|||++|||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|+|
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998753 47999999999999864 899999999999999999
Q ss_pred hHHhcc
Q 000481 1435 SKLMET 1440 (1467)
Q Consensus 1435 ~~Ll~~ 1440 (1467)
++++++
T Consensus 231 ~~~~~~ 236 (286)
T PRK13646 231 KELFKD 236 (286)
T ss_pred HHHHhC
Confidence 998764
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=385.25 Aligned_cols=216 Identities=27% Similarity=0.431 Sum_probs=189.5
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
..|+++|++++|.. ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.+ |+++
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 46999999999953 4599999999999999999999999999999999999999999999999999987654 6789
Q ss_pred EEeccCCccccc-chHHhcCC-CC--CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDP-LG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp-~~--~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
++|||++.+|.. |+++|+.. .. ..+ ++++.++++..++.++....| ..||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 99999952 11 122 346778899999877654443 468999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cC
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TN 1441 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~ 1441 (1467)
||+++|+||+||||||+||..+.+.+.+.|++..+ +.|+|+|||+.+.+.. ||||+||++|++++.|+|+++.+ +.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999987654 7899999999999866 99999999999999999999987 44
Q ss_pred Chh
Q 000481 1442 SSF 1444 (1467)
Q Consensus 1442 ~~f 1444 (1467)
..|
T Consensus 230 ~~~ 232 (351)
T PRK11432 230 SRF 232 (351)
T ss_pred chH
Confidence 443
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=364.43 Aligned_cols=220 Identities=30% Similarity=0.466 Sum_probs=195.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
|+++|++++|+.. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999643 35799999999999999999999999999999999999999999999877 389
Q ss_pred EEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000481 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1467)
Q Consensus 662 yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~i 740 (1467)
|++|++++++.|++||+.++.. ...++..+.++..++.+.++.+|.|.++..++++.+|||||||||+||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999999998654 345556666777788888899998988888899999999999999999999999999
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHHHH
Q 000481 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLV 816 (1467)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~~ 816 (1467)
+||||||++||+.+.+.+.+.+... .+|+|+|++||+++.+..||++++|++|++++.|+.+++.+..+.|..+.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 9999999999999999987655443 46899999999999998899999999999999999999987766665543
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=368.55 Aligned_cols=211 Identities=26% Similarity=0.397 Sum_probs=182.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 3789999999953 459999999999999999999999999999999999999999999999999876653 367899
Q ss_pred EeccCCcccc-cchHHhcCCCCC---C----C----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1295 IIPQEPTLFR-GSVRTNLDPLGL---Y----S----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1295 iIpQdp~LF~-gTIR~NLdp~~~---~----s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
|+||+|.+|. .|+++|+..... . + ++++.++++..++.+..... ..+||+|||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 9999999986 599999963211 1 1 23466778888876544332 3469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999987643 7899999999998765 99999999999999999999986
Q ss_pred c
Q 000481 1440 T 1440 (1467)
Q Consensus 1440 ~ 1440 (1467)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 3
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=370.75 Aligned_cols=216 Identities=24% Similarity=0.394 Sum_probs=187.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~--i~l~ 1287 (1467)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 6999999999963 3599999999999999999999999999999999999997 48999999999864 3456
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++|+||+|.+|..|+++|+... +..+ ++.+.++++.+++.+.+. +.+++ ...+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~----~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---DKLNT----NALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---HHHhC----CcccCCHHHHH
Confidence 788999999999999999999999521 1112 345777888888754432 23444 34689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|++|||||||++||..+...+.+.|++..+++|+|+|+|+++.+.+ ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988667999999999999865 9999999999999999999998
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 238 ~ 238 (254)
T PRK14273 238 F 238 (254)
T ss_pred h
Confidence 6
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=364.10 Aligned_cols=202 Identities=24% Similarity=0.408 Sum_probs=176.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH---HHhhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~---~LR~~ 1292 (1467)
|+++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964434699999999999999999999999999999999999999999999999999876543 47889
Q ss_pred cEEeccCCcccc-cchHHhcCCC----CC---CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1293 LSIIPQEPTLFR-GSVRTNLDPL----GL---YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1293 i~iIpQdp~LF~-gTIR~NLdp~----~~---~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
++|+||+|.+|. .|+++|+... +. ..++++.++++..++.+.....| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999987 5999998521 11 12456788999999876654443 36999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEE
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKL 1428 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~i 1428 (1467)
|||+++|+||+|||||++||.++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998753 47899999999999976 899999999975
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=376.37 Aligned_cols=214 Identities=25% Similarity=0.420 Sum_probs=186.0
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCC--CCCHHHHhhc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC--SMGLKDLRVK 1292 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~--~i~l~~LR~~ 1292 (1467)
-|+++|++++|+. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+. ..+...+|++
T Consensus 5 ~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4999999999963 345999999999999999999999999999999999999999999999999984 3456778999
Q ss_pred cEEeccCC--cccccchHHhcCCC---CCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHH
Q 000481 1293 LSIIPQEP--TLFRGSVRTNLDPL---GLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCL 1363 (1467)
Q Consensus 1293 i~iIpQdp--~LF~gTIR~NLdp~---~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~L 1363 (1467)
++|+||+| .+|+.|+++|+... ...+. +.+.++++.+++.++.. ....+||+|||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHHH
Confidence 99999998 57899999999521 11232 34667788888765432 2345799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhc-ccCEEEEEeCCEEEEecChhHHhcc
Q 000481 1364 GRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVI-DSDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1364 ARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~-~~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
||||+++|+||||||||++||+++.+.+.+.|++..+ ++|||+++|+++.+. .||||++|++|++++.|+++++++.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999987653 789999999999997 4999999999999999999998863
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=369.33 Aligned_cols=211 Identities=29% Similarity=0.433 Sum_probs=182.2
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH---HHHhhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l---~~LR~~ 1292 (1467)
|+++|++++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ..+|++
T Consensus 2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 789999999962 3459999999999999999999999999999999999999999999999999987654 457889
Q ss_pred cEEeccCCcccc-cchHHhcCCC------------CCC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChh
Q 000481 1293 LSIIPQEPTLFR-GSVRTNLDPL------------GLY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAG 1356 (1467)
Q Consensus 1293 i~iIpQdp~LF~-gTIR~NLdp~------------~~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~G 1356 (1467)
++++||+|.+|. .|+++|+... +.. .++++.++++..++.+.... ...+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ-----------RADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHH
Confidence 999999999886 5999999521 001 13456777888777554322 34579999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecC
Q 000481 1357 QRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDE 1433 (1467)
Q Consensus 1357 QrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~ 1433 (1467)
||||++||||++++|++|||||||++||+++.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998764 37899999999999865 99999999999999999
Q ss_pred hhHHh
Q 000481 1434 PSKLM 1438 (1467)
Q Consensus 1434 p~~Ll 1438 (1467)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 99873
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=366.55 Aligned_cols=466 Identities=19% Similarity=0.197 Sum_probs=323.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccch------hHHHHHhhhhhHhhhhhh
Q 000481 937 LIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVG------RILTRLSSDLSILDFDIP 1010 (1467)
Q Consensus 937 ~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G------~ilnR~s~D~~~id~~l~ 1010 (1467)
.+.+|..+..+..++...+.++...+..+....+-+.++++-+... .||-..-.| ..=+|+..|+...-...-
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~ 166 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTL 166 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhHH
Confidence 4677888888888888889999999999999999999999888877 444333332 334788888876554333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000481 1011 FSIVFVAASGTELLAIIGIMTF--------------VTWQVL-----VVAIFAMVAVRFVQRYYIATARELIRINGTTKA 1071 (1467)
Q Consensus 1011 ~~l~~~~~~~~~~l~~~~~~~~--------------~~~~~~-----~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~s 1071 (1467)
.....++.+++++++..+++-. ..|.+. +-++...++..++++...+-+-+-.+.|+.-|.
T Consensus 167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~ 246 (604)
T COG4178 167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY 246 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 3333344444444433333320 011111 111122222334556666666666666666554
Q ss_pred hhHhHHHHHhchhHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccH
Q 000481 1072 PVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAAL-FLVLIPRGYVAP 1150 (1467)
Q Consensus 1072 p~~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~-~~~~~~~~~~~~ 1150 (1467)
.+ .-..+....|-.|+.|+...++..+..+.-...+......+.++...-...+-+.+.+-.+ .+-....|.++-
T Consensus 247 ~L----vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~ 322 (604)
T COG4178 247 SL----VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITF 322 (604)
T ss_pred HH----HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChH
Confidence 33 3334556678888887766555554444333333222222322222222222111111111 111234678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcC------CCCCCCCcCCCCCCCCCCCcceEEEEEEEEE
Q 000481 1151 GLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI------PPEPPAIVEDKRPPSSWPFKGRIELRQLKIR 1224 (1467)
Q Consensus 1151 g~~g~~l~~~~~l~~~~~~~~~~~~~le~~~~sveRi~~~~~~------~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~ 1224 (1467)
|.+..+.+...++...+.|++..+..+..-..++.|+.++.+. +++.+.... .+....-.....|+|+|+++.
T Consensus 323 G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l~ 401 (604)
T COG4178 323 GGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSLR 401 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeEE
Confidence 8888888888888899999999999999999999999998732 222211100 000000001468999999999
Q ss_pred eCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccc
Q 000481 1225 YRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304 (1467)
Q Consensus 1225 Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~ 1304 (1467)
-+++. ..|+++||+|+|||.+-|.|+||||||||+++|.|+++-.+|+|.+=. -+++-++||.|.+=.
T Consensus 402 ~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~ 469 (604)
T COG4178 402 TPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQ 469 (604)
T ss_pred CCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCC
Confidence 86555 689999999999999999999999999999999999999999987641 246889999999999
Q ss_pred cchHHhcC-CCCC--CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q 000481 1305 GSVRTNLD-PLGL--YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381 (1467)
Q Consensus 1305 gTIR~NLd-p~~~--~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs 1381 (1467)
||+||-|. |... ++|+|+.++|.+|+|.+++.++.+-- .-..-||+||||||++||.+|+||++++||||||
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATs 544 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATS 544 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchh
Confidence 99999984 4433 89999999999999999999875422 2345699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeC
Q 000481 1382 SIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSY 1425 (1467)
Q Consensus 1382 ~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~ 1425 (1467)
+||.++|..+.+.++++.+++|+|.|+||.....-.++.+-+++
T Consensus 545 ALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 545 ALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred ccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 99999999999999999999999999999776666677665543
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=370.65 Aligned_cols=219 Identities=23% Similarity=0.455 Sum_probs=188.7
Q ss_pred CcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--C
Q 000481 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--M 1284 (1467)
Q Consensus 1212 ~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i 1284 (1467)
....|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 10 ~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 10 KNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 3457999999999963 359999999999999999999999999999999999987 589999999999863 5
Q ss_pred CHHHHhhccEEeccCCcccccchHHhcCCCC---CC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1285 GLKDLRVKLSIIPQEPTLFRGSVRTNLDPLG---LY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1285 ~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
+..++|++++++||+|.+|.+|+++|+.... .. .++++.++++.+++.+.+. ........+||+|||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 160 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQ 160 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHH
Confidence 6678899999999999999999999996321 11 1355677888887754332 222334567999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeC-----------C
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSY-----------G 1426 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~-----------G 1426 (1467)
||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.+ ||+|++|++ |
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 9999999999999999999999999999999999999987667899999999999865 999999996 6
Q ss_pred EEEEecChhHHhc
Q 000481 1427 KLLEYDEPSKLME 1439 (1467)
Q Consensus 1427 ~ivE~g~p~~Ll~ 1439 (1467)
+++|.|+++++++
T Consensus 241 ~~~~~~~~~~~~~ 253 (269)
T PRK14259 241 YLVEFNETKKIFN 253 (269)
T ss_pred eEEEeCCHHHHHh
Confidence 7999999999986
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=376.30 Aligned_cols=213 Identities=26% Similarity=0.400 Sum_probs=183.6
Q ss_pred EEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC----CCHHH
Q 000481 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS----MGLKD 1288 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~----i~l~~ 1288 (1467)
|+++|++++|+++. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996433 259999999999999999999999999999999999999999999999999963 34567
Q ss_pred HhhccEEeccCC--cccccchHHhcCCCC---CCCH----HHHHHHHHHcCCc-hHHhhCCCCcccccccCCCCCChhHH
Q 000481 1289 LRVKLSIIPQEP--TLFRGSVRTNLDPLG---LYSD----DEIWKALEKCQLK-TTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1289 LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~sd----~ei~~aL~~~~l~-~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
+|++++|++|+| .+|.+|+.+|+.... ..+. +++.++++.+++. ++.. ....+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-----------KSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-----------CCcccCCHHHH
Confidence 899999999998 789999999995211 1222 3466778888874 2322 22357999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
||++|||||+.+|+||||||||++||+.+.+.+.+.+++.. .++|||+|||+++.+.. ||||++|++|++++.|+|++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998753 47899999999998854 99999999999999999999
Q ss_pred Hhc
Q 000481 1437 LME 1439 (1467)
Q Consensus 1437 Ll~ 1439 (1467)
+.+
T Consensus 231 ~~~ 233 (288)
T PRK13643 231 VFQ 233 (288)
T ss_pred HHc
Confidence 875
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=367.99 Aligned_cols=212 Identities=25% Similarity=0.390 Sum_probs=185.3
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|+++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999743 459999999999999999999999999999999999999999999999999998888888999999
Q ss_pred eccCCcccc-cchHHhcCCC---CCCC----HHHHHHHHHHcCCch--HHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1296 IPQEPTLFR-GSVRTNLDPL---GLYS----DDEIWKALEKCQLKT--TISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1296 IpQdp~LF~-gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~--~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
+||+|.+|. .|+++|+... ...+ ++++.++++..++.+ .. .....+||+|||||++|||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-----------~~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFA-----------DRYPHELSGGQQQRVGVAR 148 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHH-----------hcChhhCCHHHHHHHHHHH
Confidence 999999996 6999998522 1112 345677788877753 22 2234679999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|++++|++|+|||||++||.++.+.+.+.|++.. .++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999999998764 37999999999998765 99999999999999999999876
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=368.15 Aligned_cols=212 Identities=30% Similarity=0.480 Sum_probs=183.4
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC---HHHHhhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDLRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~---l~~LR~~ 1292 (1467)
++++|++++|+.+ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 5789999999642 45999999999999999999999999999999999999999999999999998876 5668899
Q ss_pred cEEeccCCcccc-cchHHhcCCC------------CCC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChh
Q 000481 1293 LSIIPQEPTLFR-GSVRTNLDPL------------GLY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAG 1356 (1467)
Q Consensus 1293 i~iIpQdp~LF~-gTIR~NLdp~------------~~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~G 1356 (1467)
++++||++.+|. .|+++|+... +.. .++++.++++..++.+... ....+||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAY-----------QRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhC-----------CCcccCCHH
Confidence 999999999887 6999998421 111 2345667788877754332 234579999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecC
Q 000481 1357 QRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDE 1433 (1467)
Q Consensus 1357 QrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~ 1433 (1467)
||||++||||++++|+||||||||++||+.+.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999999864 37999999999999984 99999999999999999
Q ss_pred hhHHhc
Q 000481 1434 PSKLME 1439 (1467)
Q Consensus 1434 p~~Ll~ 1439 (1467)
++++.+
T Consensus 229 ~~~~~~ 234 (241)
T cd03256 229 PAELTD 234 (241)
T ss_pred HHHhhH
Confidence 998743
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=371.89 Aligned_cols=215 Identities=27% Similarity=0.448 Sum_probs=188.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+.+..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 59999999999644456999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EeccCC--cccccchHHhcCCC---CCCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1295 IIPQEP--TLFRGSVRTNLDPL---GLYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1295 iIpQdp--~LF~gTIR~NLdp~---~~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
|+||+| .++..|+++|+... ...+++ .+.++++..++.++....+ .+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 45577999999531 112333 3566778888766554433 479999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhcc
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
||+++|++|||||||++||..+.+.+.+.|++..+ ++|+|+++|+++.+..||+|++|++|++++.|+++++.+.
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999987643 4899999999999888999999999999999999988763
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=350.49 Aligned_cols=178 Identities=30% Similarity=0.565 Sum_probs=166.5
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+...+++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 579999999965434699999999999999999999999999999999999999999999999998776 6678999999
Q ss_pred eccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000481 1296 IPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILV 1375 (1467)
Q Consensus 1296 IpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILi 1375 (1467)
+||+|.+|++|+++|+ ..+||+|||||++||||++++|++||
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCEEEEec
Q 000481 1376 LDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1376 LDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g 1432 (1467)
|||||++||..+.+.+.+.|++..+++|+|+++|+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999877789999999999999889999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=355.74 Aligned_cols=201 Identities=56% Similarity=0.983 Sum_probs=184.0
Q ss_pred EEEEeEEEEeCCCCC--CCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEccCCcCCCC
Q 000481 595 VKIQEGNFSWDPELA--IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~--~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~ 672 (1467)
++++|++++|++... .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+|+|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 478999999965311 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCH
Q 000481 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1467)
Q Consensus 673 ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~ 752 (1467)
|++||+.++..+++++..++.+.+++.+.+..+|.|++|.+++++.+||||||||++||||++++|+++||||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999877766777888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEEccCcchhhcCCEEEEEeCCe
Q 000481 753 HTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1467)
Q Consensus 753 ~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1467)
+..+.+++.++... .+++|+|++||+++.+..||++++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99998887665443 45799999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=356.41 Aligned_cols=202 Identities=31% Similarity=0.425 Sum_probs=175.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.|.++|++..|+. .++++|||++|+.||.+|+.|||||||||||++|+|+..|++|.|.++| +
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 4788889988863 4689999999999999999999999999999999999999999999987 4
Q ss_pred EEEEccCCcCC-CCCHHHHHhcCCCC---------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 660 IAYVSQTSWIQ-SGSIRDNILYGKPM---------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 660 i~yv~Q~~~l~-~~ti~eNi~~g~~~---------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
||||+|+.-+| ..||.|||.||.+. .+.+..+.++.|+|+..-+. ....||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r-----------yP~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR-----------YPAQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc-----------CchhcChHHHHHHH
Confidence 99999998776 57999999999732 23466777888888654444 45689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHh
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
||||+..+|++|||||||+|||++..+.+-..+.+...+ |.|+++|||+.++.. .||+|++|++|+|...|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999886655544433 889999999999865 599999999999999999999976
Q ss_pred cC
Q 000481 808 AG 809 (1467)
Q Consensus 808 ~~ 809 (1467)
.+
T Consensus 228 ~P 229 (345)
T COG1118 228 HP 229 (345)
T ss_pred CC
Confidence 54
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=365.08 Aligned_cols=208 Identities=22% Similarity=0.348 Sum_probs=180.2
Q ss_pred eEEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH---H
Q 000481 1215 RIELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---L 1289 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~---L 1289 (1467)
-++++||+++|+.+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.+. +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 46999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-hccEEeccCCccccc-chHHhcCC---CCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1290 R-VKLSIIPQEPTLFRG-SVRTNLDP---LGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1290 R-~~i~iIpQdp~LF~g-TIR~NLdp---~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
| ++++|+||+|.+|.+ |+++|+.. +.... ++++.++++..++.+..... ..+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR-----------PSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHH
Confidence 3 679999999999976 99999852 11122 24577888888876543332 35799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcccCEEEEEeCCEEEEecC
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDE 1433 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~ 1433 (1467)
++||||++++|+||||||||++||+++.+.+.+.|++.. +++|+|+|+|+++.+..+|++++|++|++++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998763 4799999999999999999999999999998765
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=370.14 Aligned_cols=219 Identities=23% Similarity=0.413 Sum_probs=189.8
Q ss_pred CcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCC--C
Q 000481 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICS--M 1284 (1467)
Q Consensus 1212 ~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~--i 1284 (1467)
+.+.|+++|++++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 3568999999999963 4599999999999999999999999999999999999975 89999999999975 3
Q ss_pred CHHHHhhccEEeccCCcccccchHHhcCCC---CCC--C----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCCh
Q 000481 1285 GLKDLRVKLSIIPQEPTLFRGSVRTNLDPL---GLY--S----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSA 1355 (1467)
Q Consensus 1285 ~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~--s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~ 1355 (1467)
+...+|++++++||+|.+|.+|+++|+... ... + ++++.++++.+++.+.+.. .......+||+
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCH
Confidence 566789999999999999999999999521 111 1 3456788998888654432 12334567999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecCh
Q 000481 1356 GQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEP 1434 (1467)
Q Consensus 1356 GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p 1434 (1467)
|||||++|||||+++|++|||||||++||..+.+.+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987667899999999999965 899999999999999999
Q ss_pred hHHhc
Q 000481 1435 SKLME 1439 (1467)
Q Consensus 1435 ~~Ll~ 1439 (1467)
+++..
T Consensus 247 ~~~~~ 251 (267)
T PRK14235 247 EKMFT 251 (267)
T ss_pred HHHHh
Confidence 99986
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=366.69 Aligned_cols=215 Identities=27% Similarity=0.474 Sum_probs=187.0
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----cceEEECCeeCCCC--CHHH
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA-----GGSILIDGVDICSM--GLKD 1288 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~-----~G~I~IDG~dI~~i--~l~~ 1288 (1467)
|+++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.+++.. +...
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 789999999963 35999999999999999999999999999999999999998 99999999999763 4567
Q ss_pred HhhccEEeccCCcccccchHHhcCC----CCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1289 LRVKLSIIPQEPTLFRGSVRTNLDP----LGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1289 LR~~i~iIpQdp~LF~gTIR~NLdp----~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
.|++++|+||+|.+|..|+++|+.. .+..+ ++++.++++..++.+++.. .+ .....+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~----~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD---RL----HDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---Hh----hCCcccCCHHHHHH
Confidence 7899999999999999999999952 11112 3457788888888744421 12 23345799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++++
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999875 99999999999999999999986
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=361.97 Aligned_cols=202 Identities=26% Similarity=0.397 Sum_probs=175.0
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++++.+. .|+++++
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 578999999953 459999999999999999999999999999999999999999999999999987543 5778999
Q ss_pred eccCCcccc-cchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFR-GSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~-gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|. .|+++|+... ...+ ++++.++++..++.+.....| .+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999886 5999999521 1112 345677888888766544333 46999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
+++|++|||||||++||.++.+.+.+.|++.. .++|||+|+|+++.+.+ ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999998764 37899999999998866 9999999999999875
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=328.19 Aligned_cols=199 Identities=29% Similarity=0.437 Sum_probs=175.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~yv 663 (1467)
+.++++.|+|.... -..+++|++||++||+||||||||||+++|+|+..|.+|+|.++| .++++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 56788999996421 356899999999999999999999999999999999999999988 39999
Q ss_pred ccCCcCCC-CCHHHHHhcCCC-------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 664 SQTSWIQS-GSIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 664 ~Q~~~l~~-~ti~eNi~~g~~-------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
+|+..+|. .||++||.+|.. .+.++++.++...++....+.+|. +|||||||||||||++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHh
Confidence 99999986 499999999953 345788889999999999998885 79999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcC
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
++.+|++||||||||||.-+.+....+.+.. .++.|+++|||+++.+.. +|+++++++|+|.++|+.+++....
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999999888765433332 367899999999999876 8999999999999999999987643
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=384.67 Aligned_cols=199 Identities=24% Similarity=0.399 Sum_probs=178.4
Q ss_pred CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH----hhccEEeccCCccccc
Q 000481 1230 PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL----RVKLSIIPQEPTLFRG 1305 (1467)
Q Consensus 1230 ~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L----R~~i~iIpQdp~LF~g 1305 (1467)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.|||.|+...+...+ |++++||||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 459999999999999999999999999999999999999999999999999999998887 7899999999999975
Q ss_pred -chHHhcCC---CCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000481 1306 -SVRTNLDP---LGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLD 1377 (1467)
Q Consensus 1306 -TIR~NLdp---~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLD 1377 (1467)
|+++|+.. +...+ ++++.++|+.++|.++....| .+||||||||++|||||+++|+||+||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999942 11122 356778899999877655544 368999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1378 EANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1378 EaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||||+||+.+.+.+++.+++.. .++|+|+|||+++.+.. ||||++|++|++++.|+|+++++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9999999999999999998753 37999999999998755 99999999999999999999987
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=369.15 Aligned_cols=217 Identities=28% Similarity=0.413 Sum_probs=187.2
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCC--CCCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDIC--SMGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~--~i~l~ 1287 (1467)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999953 3599999999999999999999999999999999999987 4999999999997 45666
Q ss_pred HHhhccEEeccCCccccc-chHHhcCCC---CC--CC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1288 DLRVKLSIIPQEPTLFRG-SVRTNLDPL---GL--YS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~g-TIR~NLdp~---~~--~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
.+|++++++||+|.+|.+ |+++|+... .. .. ++++.++++..++.+.+.. .......+||+||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHHH
Confidence 789999999999999976 999999521 11 11 2456778888887654322 1233456799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
|||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667999999999999875 99999999999999999999
Q ss_pred Hhcc
Q 000481 1437 LMET 1440 (1467)
Q Consensus 1437 Ll~~ 1440 (1467)
+++.
T Consensus 235 ~~~~ 238 (253)
T PRK14267 235 VFEN 238 (253)
T ss_pred HHhC
Confidence 9863
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=366.24 Aligned_cols=211 Identities=27% Similarity=0.428 Sum_probs=181.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH-hhccE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-RVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L-R~~i~ 1294 (1467)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.... |.+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999953 359999999999999999999999999999999999999999999999999998877654 57799
Q ss_pred EeccCCccccc-chHHhcCCCC----CC-------------CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChh
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPLG----LY-------------SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAG 1356 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~~----~~-------------sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~G 1356 (1467)
++||+|.+|.+ |+++|+.... .. .++.+.++++..++.+. .......||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG 147 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL-----------ADRPAGELSYG 147 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccch-----------hhCChhhCCHH
Confidence 99999999987 9999984211 10 12234556666655432 23334579999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecCh
Q 000481 1357 QRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEP 1434 (1467)
Q Consensus 1357 QrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p 1434 (1467)
||||++||||++++|++|||||||++||..+.+.+.+.|++.. +++|+|+|+|+++.+.+ ||+|++|++|++++.|++
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCH
Confidence 9999999999999999999999999999999999999998754 57899999999999976 999999999999999999
Q ss_pred hHHhc
Q 000481 1435 SKLME 1439 (1467)
Q Consensus 1435 ~~Ll~ 1439 (1467)
+++++
T Consensus 228 ~~~~~ 232 (236)
T cd03219 228 DEVRN 232 (236)
T ss_pred HHhcc
Confidence 99865
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=337.62 Aligned_cols=472 Identities=20% Similarity=0.218 Sum_probs=331.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHhhhhhHhhhhhhHHHHHHH
Q 000481 938 IGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVA 1017 (1467)
Q Consensus 938 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~~~G~ilnR~s~D~~~id~~l~~~l~~~~ 1017 (1467)
+.-|.++..+..+...+.......++...-.+++.++.++++.+|+.-+++...++++.++++|+..+...+ ..+..+.
T Consensus 51 l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~-s~lp~~~ 129 (546)
T COG4615 51 LPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAF-SRLPELV 129 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehH-hhhHHHH
Confidence 333444444445555566667778888888999999999999999999999999999999999999998332 3345567
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHhHHHHHhchhHHHHHcccHHHHH
Q 000481 1018 ASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFF 1097 (1467)
Q Consensus 1018 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~r~l~rl~~~~~sp~~~~~~Etl~G~~tIraf~~~~~f~ 1097 (1467)
++++-.+++.+..++.+|+...+++..+++..+.+...++..-+-.+...++...++++++..++|.+..+....-.+..
T Consensus 130 qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~ 209 (546)
T COG4615 130 QAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYV 209 (546)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHH
Confidence 77777888888899999888776665555544433222211111111222334568889999999999988776544433
Q ss_pred HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHH---HHHHHHHH
Q 000481 1098 QNYLK------LVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYA---FTLTGTQV 1168 (1467)
Q Consensus 1098 ~~~~~------~~d~~~~~~~~~~~~~~wl~~rl~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~l~~~---~~l~~~~~ 1168 (1467)
....- .-+..............|-.+.+-.+ .++..++...-...... .+.+++ +-+-+++.
T Consensus 210 h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~l-------IGlvf~lal~~~w~st~--~a~tivlvlLflr~pL~ 280 (546)
T COG4615 210 HNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGL-------IGLVFWLALSLGWASTN--VAATIVLVLLFLRTPLL 280 (546)
T ss_pred HhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhccchhh--HHHHHHHHHHHHhhHHH
Confidence 32211 11111111111123344544322111 11111111111111111 222232 23457788
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhcCCCCCCCCcCCCCCCCCCCCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEE
Q 000481 1169 FLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGV 1248 (1467)
Q Consensus 1169 ~~~~~~~~le~~~~sveRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgI 1248 (1467)
.++.....+-.+.++..||.++...|..+. -...++.++| ..||++||.|.|.+.. .-+..||++|+.||.|=|
T Consensus 281 s~vgilP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFl 354 (546)
T COG4615 281 SAVGILPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFL 354 (546)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEE
Confidence 888888888899999999988865332221 1112222335 4699999999997654 357889999999999999
Q ss_pred EcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHH
Q 000481 1249 VGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEK 1328 (1467)
Q Consensus 1249 VGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~ 1328 (1467)
+|.+||||||++++|.|+|.|++|+|++||.+++.-++++.|+-++-|.-|-+||+.++ .|-+..+.+.+.+-|++
T Consensus 355 iG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~Lqr 430 (546)
T COG4615 355 IGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQR 430 (546)
T ss_pred ECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999765 34444688888777777
Q ss_pred cCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--cCCcEEEE
Q 000481 1329 CQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQE--FSNCTVIT 1406 (1467)
Q Consensus 1329 ~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~--~~~~TvI~ 1406 (1467)
..+....+- .+|==+ -..||-|||.|+++--|++-+.+|+++||=-|.-|+.=.+...+.+--. ..|+||+.
T Consensus 431 Lel~~ktsl-~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~a 504 (546)
T COG4615 431 LELAHKTSL-NDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFA 504 (546)
T ss_pred HHHhhhhcc-cCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEE
Confidence 665543321 121111 1358999999999999999999999999999999999888776665322 25999999
Q ss_pred EccCchhhcccCEEEEEeCCEEEEecChhH
Q 000481 1407 VAHRVPTVIDSDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1407 IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
|+|+-.-...+||++.|++|+++|. +|++
T Consensus 505 IsHDd~YF~~ADrll~~~~G~~~e~-tge~ 533 (546)
T COG4615 505 ISHDDHYFIHADRLLEMRNGQLSEL-TGEE 533 (546)
T ss_pred EecCchhhhhHHHHHHHhcCceeec-cccc
Confidence 9999999999999999999999996 4444
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=371.62 Aligned_cols=215 Identities=26% Similarity=0.431 Sum_probs=190.4
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCc---ceEEECCeeCCCCCHHHHh
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG---GSILIDGVDICSMGLKDLR 1290 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~---G~I~IDG~dI~~i~l~~LR 1290 (1467)
+.|+++|++++|++...++|+|+||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999996443459999999999999999999999999999999999999987 8999999999988888889
Q ss_pred hccEEeccCC--cccccchHHhcCCC---CCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1291 VKLSIIPQEP--TLFRGSVRTNLDPL---GLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1291 ~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
++++|+||+| .+++.|+++|+... ...++ +++.++++.+++.++....| .+||+|||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999998 46788999999621 12333 34778899999877655544 47999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhc
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+||||++++|++|||||||++||..+.+.+.+.|++..+ ++|||+++|+++.+..||+|++|++|++++.|+++++++
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999987653 789999999999998899999999999999999999875
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=366.86 Aligned_cols=217 Identities=29% Similarity=0.466 Sum_probs=188.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCCCCHHHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICSMGLKDL 1289 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~i~l~~L 1289 (1467)
.|+++|++++|.+ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999963 3599999999999999999999999999999999999974 69999999999998888889
Q ss_pred hhccEEeccCCccc-ccchHHhcCCC---CC--CC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1290 RVKLSIIPQEPTLF-RGSVRTNLDPL---GL--YS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1290 R~~i~iIpQdp~LF-~gTIR~NLdp~---~~--~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
|++++++||+|.+| ..|+++|+... .. .. ++++.++++.+++.+.+.. .+|.. ..+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~----~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLDAP----AGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhcCC----cccCCHHHHH
Confidence 99999999999765 57999999521 11 01 3467888999988654322 23433 3579999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|+||+|||||++||+.+.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999987678999999999999864 9999999999999999999998
Q ss_pred cc
Q 000481 1439 ET 1440 (1467)
Q Consensus 1439 ~~ 1440 (1467)
+.
T Consensus 234 ~~ 235 (250)
T PRK14247 234 TN 235 (250)
T ss_pred cC
Confidence 63
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=347.90 Aligned_cols=194 Identities=28% Similarity=0.413 Sum_probs=163.5
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
++++|++..|..+. ..++|+++||+|++||+++|+|||||||||||++|.|+..|++|+|.++|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56899999996432 24689999999999999999999999999999999999999999999987
Q ss_pred --eEEEEccCCcC-CCCCHHHHHhcC----CCC---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 659 --SIAYVSQTSWI-QSGSIRDNILYG----KPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 659 --~i~yv~Q~~~l-~~~ti~eNi~~g----~~~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
.||||+|+..+ .+.|++|||.+. ... ..++.++.++..++.+.... .+..+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~----------~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLK----------KKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhcc----------CCchhcCHHHHHHH
Confidence 39999999765 567999999953 221 13445556666666654441 34568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeE
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQ 798 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~ 798 (1467)
|||||++.+|++++.||||.+||.++++.+++.+..... .|+|+|+|||+......|||++.|+||++..
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999876655543 4899999999999999999999999999543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=374.56 Aligned_cols=203 Identities=30% Similarity=0.424 Sum_probs=179.2
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEE
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~ 661 (1467)
..++++|++.+|. +..+++|+||+|++||+++++|||||||||||++|+|+..|++|+|.++| .|+
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4699999999997 35799999999999999999999999999999999999999999999998 499
Q ss_pred EEccCCcCC-CCCHHHHHhcCCC----CC-H---HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 662 YVSQTSWIQ-SGSIRDNILYGKP----MD-K---ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 662 yv~Q~~~l~-~~ti~eNi~~g~~----~~-~---~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
+|+|+.-|| +.||+|||.||.. .. + +++.++++..+|.+.-+ ++...|||||+|||||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~-----------R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD-----------RKPHQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh-----------hChhhhChHHHHHHHHHH
Confidence 999998887 5699999999975 12 2 36777888888876544 456799999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchh-hcCCEEEEEeCCeEeEecChHHHHhcC
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l-~~~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
||..+|+++|||||+||||.+.+.++-.++.+... .|.|.|+|||+.++. ..+|||+||++|+|.+.|+++|+....
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999998776665433 489999999999874 568999999999999999999998765
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=326.09 Aligned_cols=210 Identities=28% Similarity=0.443 Sum_probs=185.2
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|.+++|.++|. ..+. ..+++|++||+|||+|+||||||||++++.||..|.+|+|.|+|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~-~~~~---~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYG-HLPM---RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeC-cceE---EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 56789999995 3332 47899999999999999999999999999999999999999999999987765 467999
Q ss_pred eccCCccccc-chHHhcC----CCCCC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLD----PLGLY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLd----p~~~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+.||..||.- ||++|+. |.-+. ..+.+..++.++|+.++...+|. .||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHH
Confidence 9999999976 9999985 33222 34568999999999999999997 4799999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhccCC
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMETNS 1442 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~~~ 1442 (1467)
+|+.+||+||||.|+||+.-.+.+...+.+.. ++.|+++|||.++.+.. +||++++|+|||++.|+-+++++.++
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999888888776543 47899999999999866 99999999999999999999998443
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=364.43 Aligned_cols=213 Identities=26% Similarity=0.434 Sum_probs=185.0
Q ss_pred EEEEEEEEEeCCC--CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH---HHh
Q 000481 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLR 1290 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~--~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~---~LR 1290 (1467)
|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 12699999999999999999999999999999999999999999999999999887654 357
Q ss_pred hccEEeccCCcccc-cchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1291 VKLSIIPQEPTLFR-GSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~-gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
++++++||+|.+|. .|+++|+... ...+ ++++.++++..++.+.....+ .+||+|||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP-----------AQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh-----------hhCCHHHHHHHH
Confidence 89999999999997 5999998521 1122 346778888888866544332 469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||||++++|++|||||||++||..+.+.+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999998764 37899999999999876 99999999999999999998865
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=377.13 Aligned_cols=221 Identities=25% Similarity=0.401 Sum_probs=186.7
Q ss_pred eEEEEEEEEEeCCC-----------CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC
Q 000481 1215 RIELRQLKIRYRPN-----------APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS 1283 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~-----------~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~ 1283 (1467)
-++++|++++|..+ ...+++||||+|++||.+||||+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 59999999999531 2459999999999999999999999999999999999999999999999999998
Q ss_pred CCHHH---HhhccEEeccCC--ccc-ccchHHhcC----CCC-CCCH----HHHHHHHHHcCCch-HHhhCCCCcccccc
Q 000481 1284 MGLKD---LRVKLSIIPQEP--TLF-RGSVRTNLD----PLG-LYSD----DEIWKALEKCQLKT-TISSLPNKLDSSVS 1347 (1467)
Q Consensus 1284 i~l~~---LR~~i~iIpQdp--~LF-~gTIR~NLd----p~~-~~sd----~ei~~aL~~~~l~~-~i~~lp~gLdt~v~ 1347 (1467)
++.++ +|++|+|||||| .+| ..||++|+. .+. ..+. +.+.++++.+++.+ ....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~---------- 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR---------- 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC----------
Confidence 87554 678999999999 477 479999984 121 2343 33556788888742 2222
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEe
Q 000481 1348 DEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLS 1424 (1467)
Q Consensus 1348 e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~ 1424 (1467)
...+||||||||++|||||+.+|++||+||||++||..+.+.|.+.|++..+ +.|+|+|||+++.+.. ||||+||+
T Consensus 158 -~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 -YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 2347999999999999999999999999999999999999999999987543 7899999999999986 99999999
Q ss_pred CCEEEEecChhHHhc-cCChhHH
Q 000481 1425 YGKLLEYDEPSKLME-TNSSFSK 1446 (1467)
Q Consensus 1425 ~G~ivE~g~p~~Ll~-~~~~f~~ 1446 (1467)
+|+|+|.|+++++++ +...|.+
T Consensus 237 ~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 237 LGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CCEEEEEcCHHHHHcCCCCHHHH
Confidence 999999999999987 3444544
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=369.01 Aligned_cols=216 Identities=24% Similarity=0.427 Sum_probs=186.6
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCCCC--HH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICSMG--LK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~i~--l~ 1287 (1467)
.-+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++++.+ ..
T Consensus 5 ~~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 5 HASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 3579999999953 469999999999999999999999999999999999986 47999999999987653 34
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC---CC------CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL---GL------YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~------~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
.+|++++|+||+|.+|.+|+++|+... .. ..++++.++++..++.+.+. +.+...+.+||+|||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 678999999999999999999998521 11 12345778889888865432 122344568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
||++||||++++|+||||||||++||..+.+.+.+.|++..+++|+|+|+|+++.+.. ||||++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987678999999999999875 999999999999999999999
Q ss_pred hc
Q 000481 1438 ME 1439 (1467)
Q Consensus 1438 l~ 1439 (1467)
.+
T Consensus 236 ~~ 237 (251)
T PRK14244 236 FK 237 (251)
T ss_pred hc
Confidence 87
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=347.16 Aligned_cols=223 Identities=28% Similarity=0.406 Sum_probs=187.6
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.+++++|+.+|.. ..||+||||+|++||.|+|+||||||||||++++.|+..|++|+|.+||.++..- ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4899999999965 5699999999999999999999999999999999999999999999999988543 46799
Q ss_pred EeccCCccccc-chHHhcCC-CCC--C----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFRG-SVRTNLDP-LGL--Y----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp-~~~--~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
||+|++.||+= |+++|+.. ... . ..+...++|+.+||.+|-...|. .||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHH
Confidence 99999999985 99999842 111 1 23468899999999999888886 479999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeC--CEE---EEecChhHHh
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSY--GKL---LEYDEPSKLM 1438 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~--G~i---vE~g~p~~Ll 1438 (1467)
|+.+|+||+||||.++||+.|...+|+-+.+.. .++||++|||+++.... +|||+||.+ |+| ++.+-|..-.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i~l~rpR~ 224 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPRI 224 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEecCCCCCcc
Confidence 999999999999999999999999999887644 36899999999988654 999999999 544 3333322113
Q ss_pred ccCChhHHHHHHHHHhc
Q 000481 1439 ETNSSFSKLVAEYWSSC 1455 (1467)
Q Consensus 1439 ~~~~~f~~lv~~~~~~~ 1455 (1467)
..+..|..+.++-+..-
T Consensus 225 ~~~~~f~~l~~~i~~~L 241 (248)
T COG1116 225 RGDPEFLELREELLEEL 241 (248)
T ss_pred ccChHHHHHHHHHHHHH
Confidence 35667888877766643
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=372.02 Aligned_cols=215 Identities=25% Similarity=0.391 Sum_probs=184.6
Q ss_pred EEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH----hhc
Q 000481 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL----RVK 1292 (1467)
Q Consensus 1217 ~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L----R~~ 1292 (1467)
.++|++.+|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 46688888853 458999999999999999999999999999999999999999999999999988776543 468
Q ss_pred cEEeccCCcccc-cchHHhcCCC---CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1293 LSIIPQEPTLFR-GSVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1293 i~iIpQdp~LF~-gTIR~NLdp~---~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
++++||+|.+|. .|+++|+... ... .++++.++++.+++.+.....| .+||+|||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 999999999985 6999998521 111 1345778899998877665544 36899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-c
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-T 1440 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~ 1440 (1467)
||++++|+||||||||++||..+.+.+.+.|++.. .++|+|+++|+++.+.+ ||+|++|++|++++.|+++++++ +
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999998764 37999999999999865 99999999999999999999987 4
Q ss_pred CChh
Q 000481 1441 NSSF 1444 (1467)
Q Consensus 1441 ~~~f 1444 (1467)
...|
T Consensus 253 ~~~~ 256 (269)
T cd03294 253 ANDY 256 (269)
T ss_pred CcHH
Confidence 3333
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=368.48 Aligned_cols=217 Identities=25% Similarity=0.459 Sum_probs=189.6
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CCH
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MGL 1286 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~l 1286 (1467)
..|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 46999999999953 469999999999999999999999999999999999996 589999999999964 346
Q ss_pred HHHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
..+|+.++++||+|.+|.+|+++|+... +..+ ++++.++++.+++.+.+.. .......+||+|||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHHHH
Confidence 6789999999999999999999999531 1112 3456778888888655432 23345668999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
||+|||||++++|++|||||||++||..+...+.+.|++..++.|+|+|+|+++.+.+ ||+|++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999999
Q ss_pred hc
Q 000481 1438 ME 1439 (1467)
Q Consensus 1438 l~ 1439 (1467)
.+
T Consensus 250 ~~ 251 (267)
T PRK14237 250 FT 251 (267)
T ss_pred hc
Confidence 86
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=367.28 Aligned_cols=215 Identities=27% Similarity=0.396 Sum_probs=186.3
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC-------
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG------- 1285 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~------- 1285 (1467)
++.++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++.+.
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999963 35999999999999999999999999999999999999999999999999986531
Q ss_pred ------HHHHhhccEEeccCCccccc-chHHhcCC----CCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCC
Q 000481 1286 ------LKDLRVKLSIIPQEPTLFRG-SVRTNLDP----LGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEG 1350 (1467)
Q Consensus 1286 ------l~~LR~~i~iIpQdp~LF~g-TIR~NLdp----~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G 1350 (1467)
...+|++++|+||+|.+|.+ |+++|+.. ..... ++++.++++..++.+... ....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence 35678899999999999975 99999852 11112 345777888888765531 1234
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEE
Q 000481 1351 ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKL 1428 (1467)
Q Consensus 1351 ~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~i 1428 (1467)
..||+|||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|+|+++.+.+ ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 5799999999999999999999999999999999999999999998764 48999999999999987 899999999999
Q ss_pred EEecChhHHhc
Q 000481 1429 LEYDEPSKLME 1439 (1467)
Q Consensus 1429 vE~g~p~~Ll~ 1439 (1467)
++.|+++++++
T Consensus 231 ~~~~~~~~~~~ 241 (257)
T PRK10619 231 EEEGAPEQLFG 241 (257)
T ss_pred EEeCCHHHhhh
Confidence 99999999876
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=381.22 Aligned_cols=215 Identities=25% Similarity=0.377 Sum_probs=188.6
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|.. ..+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ |++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999953 4589999999999999999999999999999999999999999999999999887764 67899
Q ss_pred EeccCCcccc-cchHHhcCC-CC--CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFR-GSVRTNLDP-LG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~-gTIR~NLdp-~~--~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
++||++.+|. .|+++|+.. .. ..+ ++.+.++++..++.++....| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 599999952 11 122 346778888888877655443 4689999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cCC
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNS 1442 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~~ 1442 (1467)
|+++|++|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|++++.|+|+++.+ +..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999987643 7899999999999865 99999999999999999999998 444
Q ss_pred hh
Q 000481 1443 SF 1444 (1467)
Q Consensus 1443 ~f 1444 (1467)
.|
T Consensus 229 ~~ 230 (353)
T TIGR03265 229 PF 230 (353)
T ss_pred HH
Confidence 44
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=361.59 Aligned_cols=202 Identities=27% Similarity=0.411 Sum_probs=174.1
Q ss_pred EEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH----H
Q 000481 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD----L 1289 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~----L 1289 (1467)
|+++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996431 46999999999999999999999999999999999999999999999999998876433 4
Q ss_pred hhccEEeccCCccccc-chHHhcCCC---CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1290 RVKLSIIPQEPTLFRG-SVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1290 R~~i~iIpQdp~LF~g-TIR~NLdp~---~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
|++++|+||+|.+|.+ |+++|+... ... .++++.++++..++.+..... ..+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHY-----------PSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcC-----------hhhcCHHHHHHH
Confidence 6789999999999987 999998521 111 134577788888776544332 347999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcccCEEEEEeCCEE
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKL 1428 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVl~~G~i 1428 (1467)
+||||++++|+||||||||++||+++.+.+.+.|++..+ ++|+|+|+|+++.+.-||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998654 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=370.31 Aligned_cols=216 Identities=23% Similarity=0.385 Sum_probs=189.6
Q ss_pred eEEEEEEEEEeCCC-CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1215 RIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~-~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
-|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999643 24599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEeccCC--cccccchHHhcCCC-C--CCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEP--TLFRGSVRTNLDPL-G--LYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp--~LF~gTIR~NLdp~-~--~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
+|+||+| .++..|+.+|+... . ..+++ ++.++++.+++.++.... ...||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 46788999999521 1 23333 356788888887654432 246999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccC
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETN 1441 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~ 1441 (1467)
||++++|+||||||||++||..+.+.+.+.|++..+ ++|+|+|+|+++.+..||+|++|++|++++.|+++++++..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 999999999999999999999999999999987643 78999999999999889999999999999999999988643
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=366.94 Aligned_cols=216 Identities=25% Similarity=0.412 Sum_probs=185.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~l~ 1287 (1467)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999963 359999999999999999999999999999999999997 479999999999864 3456
Q ss_pred HHhhccEEeccCCcccccchHHhcCCCC---CC-----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPLG---LY-----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~-----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|+.++++||+|.+|++|+++|+.... .. .++++.++++.+++++... ..++ ....+||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~----~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK---DNLD----RNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH---HHhc----cChhhCCHHHHH
Confidence 6788999999999999999999996321 11 1245667788887753211 1222 345689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|+|+|+++.+.+ ||||++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987677899999999999876 9999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
.
T Consensus 235 ~ 235 (251)
T PRK14251 235 I 235 (251)
T ss_pred h
Confidence 6
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=366.21 Aligned_cols=216 Identities=25% Similarity=0.474 Sum_probs=186.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc---cCC--CcceEEECCeeCCCC--CHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL---VEP--AGGSILIDGVDICSM--GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl---~~~--~~G~I~IDG~dI~~i--~l~ 1287 (1467)
.|+++|++++|.. ..+|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 4899999999953 4599999999999999999999999999999999997 344 589999999999764 346
Q ss_pred HHhhccEEeccCCcccccchHHhcCC-C---CC----CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDP-L---GL----YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp-~---~~----~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++|+||+|.+|.+|+++|+.. . +. ..+++++++++.+++.+.+.. .....+.+||+||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHHH
Confidence 78899999999999999999999952 1 11 123457788888888655432 223445689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|+||||||||++||..+.+.+.+.|++..+++|||+|+|+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987778999999999999865 9999999999999999999998
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 234 ~ 234 (250)
T PRK14245 234 T 234 (250)
T ss_pred c
Confidence 7
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=375.49 Aligned_cols=222 Identities=25% Similarity=0.406 Sum_probs=186.7
Q ss_pred eEEEEEEEEEeCCC--------CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH
Q 000481 1215 RIELRQLKIRYRPN--------APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL 1286 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~--------~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l 1286 (1467)
-|+++|++++|+.. ...+|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2469999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhhccEEeccCCc--cccc-chHHhcC-CC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCC
Q 000481 1287 K---DLRVKLSIIPQEPT--LFRG-SVRTNLD-PL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGEN 1352 (1467)
Q Consensus 1287 ~---~LR~~i~iIpQdp~--LF~g-TIR~NLd-p~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~n 1352 (1467)
. .+|++|++|||||. |+.. |+.+|+. +. ...+ .+++.++|+.+++.+. .++.. ...
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~----p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE------HYDRY----PHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH------HhcCC----Ccc
Confidence 4 56889999999994 5553 8888873 21 1112 2457788899888531 23332 346
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEE
Q 000481 1353 WSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLL 1429 (1467)
Q Consensus 1353 LS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~iv 1429 (1467)
||||||||++|||||+.+|++||+||||++||..+.+.|.+.|++.. .+.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998754 37899999999999975 9999999999999
Q ss_pred EecChhHHhc-cCChhHH
Q 000481 1430 EYDEPSKLME-TNSSFSK 1446 (1467)
Q Consensus 1430 E~g~p~~Ll~-~~~~f~~ 1446 (1467)
|.|+++++++ +...|.+
T Consensus 235 e~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred EECCHHHHhcCCCCHHHH
Confidence 9999999997 3444543
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=359.42 Aligned_cols=208 Identities=25% Similarity=0.397 Sum_probs=180.9
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|+++++
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 579999999953 3599999999999999999999999999999999999999999999999998763 3567889999
Q ss_pred eccCCccccc-chHHhcCC----CCC---CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDP----LGL---YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp----~~~---~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++|+.. .+. ..++++.++++..++.+.....| .+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999875 99999842 111 12346778889988876544332 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
+.+|++|||||||++||.++.+.+.+.|++..+ ++|+|+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999987542 7899999999999876 999999999999999998874
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=359.16 Aligned_cols=205 Identities=24% Similarity=0.389 Sum_probs=177.6
Q ss_pred EEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
|+++|++++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999996431 269999999999999999999999999999999999999999999999999986 456788999
Q ss_pred EEeccCCccccc-chHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
+++||+|.+|.+ |+++|+... ...+ ++++.++++..++.+.... ...+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999986 999998421 1112 3456778888887655433 34579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
|++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998763 47899999999999876 9999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=369.82 Aligned_cols=214 Identities=24% Similarity=0.388 Sum_probs=188.5
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|+.+ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++++++
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 7899999999533 359999999999999999999999999999999999999999999999999988888889999999
Q ss_pred eccCC--cccccchHHhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1296 IPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1296 IpQdp--~LF~gTIR~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
+||+| .+|+.|+++|+.... ..+ ++.+.++++.+++.+.....| ..||+|||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHHH
Confidence 99998 478889999995211 123 235778899988877655443 3689999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhc-ccCEEEEEeCCEEEEecChhHHhccC
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVI-DSDMVMVLSYGKLLEYDEPSKLMETN 1441 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~-~~DrIlVl~~G~ivE~g~p~~Ll~~~ 1441 (1467)
|+++|++|||||||++||..+.+.+.+.+++..+ ++|+|++||+++.+. -||||++|++|++++.|+++++++..
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCH
Confidence 9999999999999999999999999999987643 789999999999996 59999999999999999999998643
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=373.16 Aligned_cols=215 Identities=21% Similarity=0.313 Sum_probs=182.8
Q ss_pred eEEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC--------
Q 000481 1215 RIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS-------- 1283 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~-------- 1283 (1467)
.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999996432 259999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CCHHHHhhccEEeccCC--cccccchHHhcCCCC---CCC----HHHHHHHHHHcCCc-hHHhh
Q 000481 1284 ----------------MGLKDLRVKLSIIPQEP--TLFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLK-TTISS 1337 (1467)
Q Consensus 1284 ----------------i~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~~---~~s----d~ei~~aL~~~~l~-~~i~~ 1337 (1467)
.+...+|++++|+||+| .+|..|+++||.... ..+ ++++.++++.+++. ++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~- 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ- 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-
Confidence 13467899999999987 688889999995211 123 24467788888875 3332
Q ss_pred CCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc
Q 000481 1338 LPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID 1416 (1467)
Q Consensus 1338 lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~ 1416 (1467)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+..
T Consensus 161 ----------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 161 ----------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 2235799999999999999999999999999999999999999999998753 47999999999998755
Q ss_pred -cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1417 -SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1417 -~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
||||+||++|++++.|+|+++.+.
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998763
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=365.20 Aligned_cols=216 Identities=25% Similarity=0.431 Sum_probs=185.5
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CcceEEECCeeCCCC--CHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE--P---AGGSILIDGVDICSM--GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~--~---~~G~I~IDG~dI~~i--~l~ 1287 (1467)
-++++|++++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+.+ | ++|+|.+||.+++.. +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999963 359999999999999999999999999999999999853 6 499999999999753 345
Q ss_pred HHhhccEEeccCCcccccchHHhcCC----CCCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDP----LGLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp----~~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|+.++++||+|.+|+.|+++|+.. .+.. .++++.++++.+++.+.+.. .......+||+||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHHH
Confidence 67889999999999999999999852 1111 13456677888887654332 223445689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|++|||||||++||.++.+.+.+.|++..+++|+|+|+|+++.+.. ||||++|++|++++.|++++++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999865 9999999999999999999998
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 236 ~ 236 (252)
T PRK14239 236 M 236 (252)
T ss_pred h
Confidence 6
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=364.57 Aligned_cols=218 Identities=23% Similarity=0.460 Sum_probs=187.9
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CcceEEECCeeCCCC--C
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE--P---AGGSILIDGVDICSM--G 1285 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~--~---~~G~I~IDG~dI~~i--~ 1285 (1467)
+|.|+++|++++|+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 467999999999963 459999999999999999999999999999999999986 3 689999999999753 4
Q ss_pred HHHHhhccEEeccCCcccc-cchHHhcCC-C---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChh
Q 000481 1286 LKDLRVKLSIIPQEPTLFR-GSVRTNLDP-L---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAG 1356 (1467)
Q Consensus 1286 l~~LR~~i~iIpQdp~LF~-gTIR~NLdp-~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~G 1356 (1467)
...+|++++++||++.+|. .|+++|+.. + +..+ ++++.++++.+++.+.+... ......+||+|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-------LKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-------hhCCcCcCCHH
Confidence 5578899999999999998 599999952 1 1122 24467778888876544321 22345689999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChh
Q 000481 1357 QRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPS 1435 (1467)
Q Consensus 1357 QrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~ 1435 (1467)
||||++||||++++|++|||||||++||..+.+.+.+.|++..++.|+|+++|+++.+.. ||+|++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777899999999999865 9999999999999999999
Q ss_pred HHhc
Q 000481 1436 KLME 1439 (1467)
Q Consensus 1436 ~Ll~ 1439 (1467)
++..
T Consensus 233 ~~~~ 236 (252)
T PRK14256 233 KIFT 236 (252)
T ss_pred HHHh
Confidence 9976
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=364.90 Aligned_cols=217 Identities=25% Similarity=0.455 Sum_probs=187.6
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCCC--CHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICSM--GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~i--~l~ 1287 (1467)
-|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 4699999999999999999999999999999999999984 899999999998753 345
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC----CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL----GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++++||+|.+|..|+++|+... +.. .++++.++++..++.+.+.. .......+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHHH
Confidence 678999999999999999999999521 111 23446778888887654422 233455689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|+||+|||||++||..+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999987678999999999998765 9999999999999999999998
Q ss_pred cc
Q 000481 1439 ET 1440 (1467)
Q Consensus 1439 ~~ 1440 (1467)
+.
T Consensus 234 ~~ 235 (250)
T PRK14262 234 ER 235 (250)
T ss_pred hC
Confidence 63
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=366.75 Aligned_cols=216 Identities=25% Similarity=0.426 Sum_probs=186.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCCC--CHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICSM--GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~i--~l~ 1287 (1467)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 6999999999953 3599999999999999999999999999999999999985 799999999998753 345
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
.+|+.++|+||+|.+|..|+++|+... ...+ ++++.++++.+++.+.+. ..+++ ...+||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~----~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLKS----PALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhcC----ChhhCCHHHHHH
Confidence 678899999999999999999999521 1122 234677888888754322 12333 345799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++|||||+++|+||+|||||++||.++...+.+.|++..+++|+|+|+|+++.+.+ ||||++|++|++++.|+|+++.+
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987668999999999999876 99999999999999999999986
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=363.57 Aligned_cols=211 Identities=24% Similarity=0.355 Sum_probs=184.4
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH-hhccE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-RVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L-R~~i~ 1294 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |++++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 799999999953 359999999999999999999999999999999999999999999999999988876654 56799
Q ss_pred EeccCCccccc-chHHhcCCCCC------------C---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPLGL------------Y---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~~~------------~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
++||+|.+|.+ |+++|++.... . .++++.++++..++.+.. .....+||+|||
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Ge~ 149 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-----------DRLAGLLSHGQK 149 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHH
Confidence 99999999987 99999953210 0 234566777777765432 223457999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
||++||||++++|++|+|||||++||+++.+.+.+.|++..+++|+|+++|+++.+.+ ||+|++|++|++++.|+++++
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999976 999999999999999999998
Q ss_pred hc
Q 000481 1438 ME 1439 (1467)
Q Consensus 1438 l~ 1439 (1467)
+.
T Consensus 230 ~~ 231 (242)
T TIGR03411 230 QA 231 (242)
T ss_pred hc
Confidence 75
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=361.20 Aligned_cols=211 Identities=28% Similarity=0.393 Sum_probs=181.8
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.+. +++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 789999999953 45999999999999999999999999999999999999999999999999998776544 468999
Q ss_pred eccCCcc-cccchHHhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTL-FRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~L-F~gTIR~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+ +.+|+++|+.... ..+ ++++.+.++..++.+. ......+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999987 4679999995321 122 2345566666665433 2333457999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhcc
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
+++|+||||||||++||..+.+.+.+.|++.. +++|+|+++|+++.+..||+|++|++|++++.|+++++.+.
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999998764 47899999999999988999999999999999999999874
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=356.67 Aligned_cols=202 Identities=29% Similarity=0.437 Sum_probs=178.0
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+. .++|+|+||+|++| ++||+|+||||||||+++|.|+++|++|+|.+||.++++.+ ..+|+++++
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 579999999953 35999999999999 99999999999999999999999999999999999998877 778999999
Q ss_pred eccCCccccc-chHHhcCC---CCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDP---LGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp---~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++|+.. +...+ ++++.++++..++.+... +.+ .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-------KKI----GSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-------Cch----hhCCHHHHHHHHHHHHH
Confidence 9999999986 99999852 11112 345778888888876533 222 46999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
+++|++|||||||++||..+.+.+.+.|++..+++|+|+|+|+++.+.. ||||++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987667999999999999975 9999999999999865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=359.17 Aligned_cols=212 Identities=25% Similarity=0.432 Sum_probs=178.2
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH-hhccE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-RVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L-R~~i~ 1294 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 579999999953 359999999999999999999999999999999999999999999999999988877654 67899
Q ss_pred EeccCCccccc-chHHhcCCCCC-CC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhc
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPLGL-YS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLL 1368 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~~~-~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlL 1368 (1467)
|+||+|.+|.+ |+++|+..... .. .+++.++++..+ .+++.++ ....+||+|||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~l~~~~~----~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP------RLKERRK----QLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH------hhhhhhh----CchhhCCHHHHHHHHHHHHHh
Confidence 99999999987 99999953211 11 122333444331 1222233 344579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1369 KRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1369 r~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++|++|+|||||++||.++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999998764 47899999999999866 99999999999999999988753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=363.78 Aligned_cols=216 Identities=22% Similarity=0.412 Sum_probs=186.0
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE--P---AGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~--~---~~G~I~IDG~dI~~--i~l~ 1287 (1467)
-|+++|++++|+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999963 359999999999999999999999999999999999987 3 59999999999864 4556
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC----CCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++|+||+|.+|.+|+++|+... +..++ +++.++++..++.+.+.. .......+||+||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD-------RLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 788999999999999999999998421 11222 235567778877654422 123345679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|+||+|||||++||..+...+.+.|++..+++|+|+|+|+++.+.+ ||||++|++|++++.|+|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987678999999999999875 9999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 243 ~ 243 (259)
T PRK14274 243 S 243 (259)
T ss_pred h
Confidence 6
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=366.50 Aligned_cols=221 Identities=22% Similarity=0.352 Sum_probs=187.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH---HHhh
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRV 1291 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~---~LR~ 1291 (1467)
-|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4999999999953 4599999999999999999999999999999999999999999999999999877643 4578
Q ss_pred ccEEeccCCccccc-chHHhcCC----CCCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1292 KLSIIPQEPTLFRG-SVRTNLDP----LGLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~g-TIR~NLdp----~~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
+++++||++.+|.+ |+++|+.. ....+. +.+.++++..++.+.... . ..+||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~----~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-------M----PSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-------C----hhhCCHHHHHHHH
Confidence 89999999999987 99999852 111222 345667787777554322 2 2469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||||++++|++|||||||++||..+.+.+.+.|++..+ ++|+|+|+|+++.+.. ||+|++|++|++++.|+++++++
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999987643 7899999999999876 99999999999999999999987
Q ss_pred c-CChhHHHH
Q 000481 1440 T-NSSFSKLV 1448 (1467)
Q Consensus 1440 ~-~~~f~~lv 1448 (1467)
+ ...++.++
T Consensus 234 ~~~~~~~~~~ 243 (269)
T PRK11831 234 NPDPRVRQFL 243 (269)
T ss_pred CCcHHHHHHH
Confidence 3 33334443
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=377.96 Aligned_cols=210 Identities=29% Similarity=0.416 Sum_probs=185.3
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|.. ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+. .|++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3899999999963 359999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EeccCCccccc-chHHhcCC-CC------CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1295 IIPQEPTLFRG-SVRTNLDP-LG------LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp-~~------~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
|+||++.+|.. |+++|+.. .. ..+ ++++.++++.+++.++....| ..||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 99999999975 99999962 11 122 345677888888876654443 368999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||||+++|++|+|||||++||..+...+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|+++++
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999987654 6899999999999876 99999999999999999999987
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=354.68 Aligned_cols=198 Identities=25% Similarity=0.397 Sum_probs=173.6
Q ss_pred EEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEe
Q 000481 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1467)
Q Consensus 1217 ~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iI 1296 (1467)
+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 459999999999999999999999999999999999999999999999999864 4567899999
Q ss_pred ccCC--cccccchHHhcCCCC---CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1297 PQEP--TLFRGSVRTNLDPLG---LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1297 pQdp--~LF~gTIR~NLdp~~---~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
||+| .+|..|+++|+.... ...++++.++++.+++.++....| ..||+|||||++||||++++|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCC
Confidence 9998 467899999996321 123457889999999887655444 368999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHH-cCCcEEEEEccCchhhcc-cCEEEEEeCCEEE
Q 000481 1372 RILVLDEANASIDSATDAILQRIIRQE-FSNCTVITVAHRVPTVID-SDMVMVLSYGKLL 1429 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~~i~~~-~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~iv 1429 (1467)
++|+|||||++||+++.+.+.+.|++. .+++|+|++||+++.+.+ ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999876 357899999999999976 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=358.66 Aligned_cols=217 Identities=32% Similarity=0.507 Sum_probs=191.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
++++|+++.|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999653335799999999999999999999999999999999999999999999877 399
Q ss_pred EEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000481 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1467)
Q Consensus 662 yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~i 740 (1467)
|++|++.+++.|++||+.++.. ...++..+.++.+++.+.++.+|.|.++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999888999999998754 344556677777888888899999988888899999999999999999999999999
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchH
Q 000481 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1467)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~ 812 (1467)
+||||||++||+++.+.+.+.+.... +|+|+|++||+++.+..||+|++|++|++++.|+.+++......+
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 231 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVY 231 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhH
Confidence 99999999999999999876554444 789999999999999889999999999999999988887654333
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=362.74 Aligned_cols=217 Identities=24% Similarity=0.454 Sum_probs=187.0
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCC--CCH
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICS--MGL 1286 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~--i~l 1286 (1467)
|.|+++||+++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 57999999999963 3599999999999999999999999999999999999863 69999999999975 456
Q ss_pred HHHhhccEEeccCCcccccchHHhcCCC----CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
..+|++++++||+|.+|+.|+++|+... +.. .++++.++++.+++.+.+.. .......+||+|||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHHH
Confidence 6789999999999999999999999521 111 23456677788877544332 22334568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
||++||||++++|++|+|||||++||..+...+.+.|++..+++|+|+|+|+++.+.+ ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987668899999999998876 999999999999999999998
Q ss_pred hc
Q 000481 1438 ME 1439 (1467)
Q Consensus 1438 l~ 1439 (1467)
..
T Consensus 233 ~~ 234 (250)
T PRK14240 233 FT 234 (250)
T ss_pred Hh
Confidence 76
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=370.98 Aligned_cols=216 Identities=25% Similarity=0.376 Sum_probs=184.0
Q ss_pred eEEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC----CCHH
Q 000481 1215 RIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS----MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~----i~l~ 1287 (1467)
.|+++|++++|+... .++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 459999999999999999999999999999999999999999999999999963 3466
Q ss_pred HHhhccEEeccCC--cccccchHHhcCCC--C-CCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1288 DLRVKLSIIPQEP--TLFRGSVRTNLDPL--G-LYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp--~LF~gTIR~NLdp~--~-~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
..|++++|+||+| .+|+.|+++|+... . ..++ +.+.++++.+++.+.+. + ....+||+|||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~------~----~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL------A----RSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh------h----CCcccCCHHHH
Confidence 7889999999998 68889999999411 1 1233 24566778888753221 2 22357999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChh
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPS 1435 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~ 1435 (1467)
||++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|+|+++.+.. ||||++|++|++++.|+++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999987643 7899999999999865 9999999999999999999
Q ss_pred HHhcc
Q 000481 1436 KLMET 1440 (1467)
Q Consensus 1436 ~Ll~~ 1440 (1467)
++.+.
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 98753
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=356.48 Aligned_cols=211 Identities=20% Similarity=0.357 Sum_probs=186.7
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH----HHHhh
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL----KDLRV 1291 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l----~~LR~ 1291 (1467)
+.+.|+.++|+++ .++++|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+
T Consensus 1 ~~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 1 VQVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred CeeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 3578899999755 469999999999999999999999999999999999999999999999999876543 34678
Q ss_pred ccEEeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1292 KLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
.++|+||+|.+|+.|+++|+.....+++++.+++++.+++.+.+..+|.|+++.+.....+||+|||||++||||++++|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 89999999999999999999754445667788899999999999989999999998888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH--HHHHHc-CCcEEEEEccCchhhcccCEEEEEeCCE
Q 000481 1372 RILVLDEANASIDSATDAILQR--IIRQEF-SNCTVITVAHRVPTVIDSDMVMVLSYGK 1427 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~--~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVl~~G~ 1427 (1467)
++|||||||++||..+.+.+.+ .++... .+.|+|+++|+.+.+..||+|++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999998777666 444322 3689999999999999999999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=363.98 Aligned_cols=221 Identities=23% Similarity=0.425 Sum_probs=190.6
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~l~ 1287 (1467)
.++++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+.+ |++|+|.+||.+++. .+..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3889999999963 359999999999999999999999999999999999875 389999999999976 3466
Q ss_pred HHhhccEEeccCCcccccchHHhcCC-C---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDP-L---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp-~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++|+||+|.+|.+|+++|+.. + +..+ ++++.++++.+++.+++..+ + ...+.+||+||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~----~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---L----DKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---H----hCCcccCCHHHHH
Confidence 78999999999999999999999962 1 1112 23467788899987765432 2 3445689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|+|||||++++|+||+|||||++||..+...+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987778999999999999877 8999999999999999999997
Q ss_pred c-cCChh
Q 000481 1439 E-TNSSF 1444 (1467)
Q Consensus 1439 ~-~~~~f 1444 (1467)
. +.+.+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14266 234 INPKDKR 240 (250)
T ss_pred hCCCChH
Confidence 6 44444
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=362.88 Aligned_cols=216 Identities=27% Similarity=0.475 Sum_probs=187.0
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----cceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA-----GGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~-----~G~I~IDG~dI~~--i~l~ 1287 (1467)
.|+++|++++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|+ +|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5999999999953 45999999999999999999999999999999999999997 6999999999875 3456
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++|+||+|.+|++|+++|+... +... ++.+.++++..++.+.+.. .....+.+||+||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHHH
Confidence 789999999999999999999999521 1111 2345566777777654432 234456789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|++|||||||++||..+...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887567999999999999987 7999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
.
T Consensus 235 ~ 235 (251)
T PRK14249 235 S 235 (251)
T ss_pred h
Confidence 6
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=367.41 Aligned_cols=216 Identities=23% Similarity=0.421 Sum_probs=187.9
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 49999999999754446999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EeccCCc-cc-ccchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1295 IIPQEPT-LF-RGSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1295 iIpQdp~-LF-~gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
++||+|. +| ..|+++|+... .... ++++.++++..++.++... ...+||+|||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHH
Confidence 9999994 44 55889998421 1112 3456778888887654332 23579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhccC
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETN 1441 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~~~ 1441 (1467)
|++++|++|||||||++||..+.+.+.+.|++..+ ++|+|+++|+++.+..||||++|++|++++.|+++++.+..
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999987643 78999999999999889999999999999999999987743
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=381.28 Aligned_cols=213 Identities=24% Similarity=0.426 Sum_probs=190.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
-++++|++++|.. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+++..++|++|+
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999953 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcc-cccchHHhcCCC--------C---CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1295 IIPQEPTL-FRGSVRTNLDPL--------G---LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1295 iIpQdp~L-F~gTIR~NLdp~--------~---~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
++||++.+ |+.|+++|+... + ...++.+.++++.+++.++... . ..+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-------~----~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-------P----VTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-------C----hhhCCHHHHHHHH
Confidence 99999987 677999998521 1 1123468899999999776543 2 2469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
|||||+++|+||+|||||++||..+...+.+.|++.. ++.|+|+++|+++.+.. ||||++|++|++++.|+|++++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999999764 47899999999999954 999999999999999999998863
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=366.24 Aligned_cols=216 Identities=24% Similarity=0.469 Sum_probs=185.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~l~ 1287 (1467)
-|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999963 459999999999999999999999999999999999865 789999999999975 3445
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC----CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL----GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++|+||+|.+|.+|+++|+... +.. .++.+.++++..++.+.+.. .......+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD-------RLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHH-------HHhcCcccCCHHHHH
Confidence 678999999999999999999998521 111 13456778888877533221 123345689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|+||||||||++||..+.+.+.+.|++..+++|||+++|+++.+.. ||||++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999998865 9999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 252 ~ 252 (268)
T PRK14248 252 T 252 (268)
T ss_pred h
Confidence 6
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=368.12 Aligned_cols=216 Identities=22% Similarity=0.383 Sum_probs=189.0
Q ss_pred eEEEEEEEEEeCCC----CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC-HHHH
Q 000481 1215 RIELRQLKIRYRPN----APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG-LKDL 1289 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~----~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~-l~~L 1289 (1467)
-++++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999642 246999999999999999999999999999999999999999999999999998654 4567
Q ss_pred hhccEEeccCCc--ccccchHHhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1290 RVKLSIIPQEPT--LFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1290 R~~i~iIpQdp~--LF~gTIR~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
|++++++||+|. +|..|+++|+.... ..+ ++++.++++.+++.++....| .+||+|||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 67678999985211 112 356788899999987765544 3689999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHh
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
++||||++++|++|||||||++||..+...+.+.|++.. .++|||+|+|+++.+..||+|++|++|++++.|+|+++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998764 378999999999999889999999999999999999997
Q ss_pred ccC
Q 000481 1439 ETN 1441 (1467)
Q Consensus 1439 ~~~ 1441 (1467)
+..
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 643
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=354.19 Aligned_cols=202 Identities=28% Similarity=0.483 Sum_probs=179.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.++++|++|+|+++ .++|+|+|++|++|+.++|+|+||||||||++++.|+++|++|+|.++| +
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999865 5899999999999999999999999999999999999999999998866 3
Q ss_pred EEEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 660 IAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 660 i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
+|||+|+| .++..||.|.+.||.. ..+ ++.+++++.|++.+..+. ...+|||||||||||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r-----------~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDR-----------PPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccC-----------CccccCCcceeeHHh
Confidence 99999999 5789999999999953 333 457778888888876553 456999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|.+|..+|+++|||||||+||+...+.+.+.+.+...+ |+|+|++||+++.+.. ||++++|++|+++.+|+++++.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999998766555555 6899999999999876 999999999999999999888754
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=332.81 Aligned_cols=505 Identities=15% Similarity=0.140 Sum_probs=335.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 269 KVITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMR 348 (1467)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 348 (1467)
-.++|.+++.++....+.+.....+. .++..+-++..+.+......+.+.+++.+..++.+... ......+|..
T Consensus 5 l~llr~nr~~~i~~~a~s~a~g~~g~---~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is---~lg~t~~gq~ 78 (546)
T COG4615 5 LLLLRQNRWPFISVMALSLASGALGI---GLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLIS---QLGLTTLGQH 78 (546)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 45678888887766655554444332 22222223322211111111112222222222222211 1223344555
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000481 349 MRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFL 428 (1467)
Q Consensus 349 ir~~L~~~i~~k~l~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~~~~~~~~~l~i~~~~~~L~~~lg~~~l~gl~~~~ 428 (1467)
.-..++..+-+|.+.-|....++.+++.++..++.|+..|.-....+..+..+.+-++.+...|+.+-+...+..++.++
T Consensus 79 ~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~iv 158 (546)
T COG4615 79 FIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIV 158 (546)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555566778888888888888899999999999999998666666666666666677777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHH-H
Q 000481 429 ICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE--KFKS-LIESRREKEFKWLSEAQLRKAYG-T 504 (1467)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~--~f~~-~i~~~R~~E~~~l~~~~~~~~~~-~ 504 (1467)
+....+....++..+...+..+.-|+-.+..+.++.|-|..|+..--. .+.+ .+...++.+- ...+...+. .
T Consensus 159 v~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~----~~~~~n~f~~l 234 (546)
T COG4615 159 VTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH----HIIRANTFHLL 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh----hhhhhhHHHHH
Confidence 777777777778888888888889999999999999999999865321 1111 1111222111 111111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Q 000481 505 VIYWMSPTIISSVIFLGCALT-GSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDV 583 (1467)
Q Consensus 505 ~~~~~~~~~~~~~~f~~~~l~-~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~vs~~Ri~~fL~~~e~~~~~~ 583 (1467)
...|..-.+.++ +-..+++. .-+--+...+.|....+--++.|+.+....+..+.+|.++++||.++-..|+...-..
T Consensus 235 a~~~~ni~l~~l-IGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~ 313 (546)
T COG4615 235 AVNWSNIMLLGL-IGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR 313 (546)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCC
Confidence 122222111111 11111111 1112223345555555666899999999999999999999999999754433221111
Q ss_pred ccccccCCCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCe----
Q 000481 584 RRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---- 659 (1467)
Q Consensus 584 ~~~~~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~---- 659 (1467)
..+ .++-..++++|+.|+|++. ..-+..||++|++||++-|+|.|||||||+++++.|++.|++|+|.++|+
T Consensus 314 -~q~-~p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~ 389 (546)
T COG4615 314 -PQA-FPDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA 389 (546)
T ss_pred -CCc-CCcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC
Confidence 111 1123579999999999864 37899999999999999999999999999999999999999999999984
Q ss_pred ---------EEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 660 ---------IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 660 ---------i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
++-|+-|-|+|+.++ -++. ..++.+++-++...+....+ +.+|.-+ ...||-|||.|+|
T Consensus 390 e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~kts-l~d~~fs-----~~kLStGQkKRlA 458 (546)
T COG4615 390 EQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKTS-LNDGRFS-----NLKLSTGQKKRLA 458 (546)
T ss_pred CCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----ccccccchHHHHH
Confidence 444555556554432 2222 45556666666555544332 3333322 2479999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHH-hcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEe
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~-~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1467)
+--|+..+.|||+|||=-+.-||+=++..++..+-. ...|||++.||||-.+...|||++.|++|++++.
T Consensus 459 ll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 459 LLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999999999999999998877644 4579999999999999999999999999999874
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=359.88 Aligned_cols=223 Identities=28% Similarity=0.402 Sum_probs=197.9
Q ss_pred CCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
.+.|+++|++++|+.. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 4579999999999643 24699999999999999999999999999999999999999999999876
Q ss_pred eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCC
Q 000481 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~ 738 (1467)
.++|++|+|++++.|++||+........+++.++++..++.+.++.+|.|.++.+++++.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999876544566777888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcC-chHHHHH
Q 000481 739 DIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAG-TAFEQLV 816 (1467)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~-~~~~~~~ 816 (1467)
+++||||||++||+++.+.+++.+ ....+++|+|++||+++.+..||+|++|++|++++.|+++++.+.. +.|.+++
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l-~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVV-MTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHH-HHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 999999999999999988876544 4445689999999999999889999999999999999999987653 3344443
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=363.17 Aligned_cols=211 Identities=24% Similarity=0.435 Sum_probs=183.9
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC----------
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---------- 1285 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~---------- 1285 (1467)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 579999999963 35999999999999999999999999999999999999999999999999997653
Q ss_pred ---HHHHhhccEEeccCCcccc-cchHHhcCCC----CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCC
Q 000481 1286 ---LKDLRVKLSIIPQEPTLFR-GSVRTNLDPL----GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENW 1353 (1467)
Q Consensus 1286 ---l~~LR~~i~iIpQdp~LF~-gTIR~NLdp~----~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nL 1353 (1467)
...+|++++++||++.+|. +|+++|+... ... .++++.++++..++.+.....| ..|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP-----------AQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh-----------hhc
Confidence 2467899999999999885 7999999521 011 2345777888888766544433 469
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEE
Q 000481 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430 (1467)
Q Consensus 1354 S~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE 1430 (1467)
|+|||||++||||++++|++|||||||++||+.+...+.+.|++..+ ++|+|+|+|+++.+.+ ||++++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987643 7899999999999965 99999999999999
Q ss_pred ecChhHHhc
Q 000481 1431 YDEPSKLME 1439 (1467)
Q Consensus 1431 ~g~p~~Ll~ 1439 (1467)
.|+++++.+
T Consensus 228 ~g~~~~~~~ 236 (252)
T TIGR03005 228 QGKPDEIFR 236 (252)
T ss_pred eCCHHHHhc
Confidence 999999986
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=373.54 Aligned_cols=224 Identities=17% Similarity=0.309 Sum_probs=184.7
Q ss_pred eEEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC----CCcceEEECCeeCCCCCHHH
Q 000481 1215 RIELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE----PAGGSILIDGVDICSMGLKD 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~----~~~G~I~IDG~dI~~i~l~~ 1288 (1467)
-++++|++++|+... ..+|+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 389999999996432 359999999999999999999999999999999999997 48999999999999998777
Q ss_pred Hhh----ccEEeccCCc--ccc-cchHHh----cCCCCCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCC
Q 000481 1289 LRV----KLSIIPQEPT--LFR-GSVRTN----LDPLGLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENW 1353 (1467)
Q Consensus 1289 LR~----~i~iIpQdp~--LF~-gTIR~N----Ldp~~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nL 1353 (1467)
+|+ +|++|||||. ++. -|+.+| +...... .++++.++|+.+++.+.... ......+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR--------LDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhCCchhC
Confidence 654 6999999995 443 255544 3322111 23457888999998653211 12334579
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhc-ccCEEEEEeCCEEEE
Q 000481 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVI-DSDMVMVLSYGKLLE 1430 (1467)
Q Consensus 1354 S~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~-~~DrIlVl~~G~ivE 1430 (1467)
|||||||++|||||+.+|++||+||||++||..+...|.+.|++.. .+.|+|+|||+++.+. -||||+||++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998764 3789999999999995 599999999999999
Q ss_pred ecChhHHhc-cCChhHH
Q 000481 1431 YDEPSKLME-TNSSFSK 1446 (1467)
Q Consensus 1431 ~g~p~~Ll~-~~~~f~~ 1446 (1467)
.|+++++++ +...|.+
T Consensus 235 ~g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQ 251 (326)
T ss_pred ECCHHHHhhCCCChHHH
Confidence 999999997 4444543
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=360.85 Aligned_cols=211 Identities=27% Similarity=0.469 Sum_probs=180.5
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH-hhccE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-RVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L-R~~i~ 1294 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999953 359999999999999999999999999999999999999999999999999988776654 57899
Q ss_pred EeccCCccccc-chHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
++||+|.+|.+ |+++|+... .... ++++.+.++..++.+. ......+||+|||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL-----------RKSKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHHH
Confidence 99999999987 999999521 1112 2234556666665433 233345799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++++|++|||||||++||.++.+.+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999999998754 47899999999988766 99999999999999999999865
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=356.66 Aligned_cols=200 Identities=32% Similarity=0.458 Sum_probs=173.3
Q ss_pred EEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEe
Q 000481 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1467)
Q Consensus 1217 ~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iI 1296 (1467)
+++|++++|+.+..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 47899999964324699999999999999999999999999999999999999999999999999988888899999999
Q ss_pred ccCCc--ccccchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1297 PQEPT--LFRGSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1297 pQdp~--LF~gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
||+|. ++..|+++|+... ...+ ++++.++++..++.+..... ..+||||||||++||||+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRS-----------PFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCC-----------cccCCHHHHHHHHHHHHH
Confidence 99983 6788999999531 1122 23466778888776554332 347999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCE
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGK 1427 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ 1427 (1467)
+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999998764 37899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=372.70 Aligned_cols=213 Identities=27% Similarity=0.428 Sum_probs=185.2
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
..|+++|++++|.. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|+...+ ...|++|
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 46999999999963 46999999999999999999999999999999999999999999999999998755 4578999
Q ss_pred EEeccCCcccc-cchHHhcCCCC---CCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1294 SIIPQEPTLFR-GSVRTNLDPLG---LYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1294 ~iIpQdp~LF~-gTIR~NLdp~~---~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
+|+||+|.+|. .|+++|+..++ ..++ +.+.++++.+++.+. .++++ .+||+|||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK-------ADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchH-------hcCch----hhCCHHHHHHHHHHH
Confidence 99999999986 59999996322 1232 235566777766543 44444 369999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
||+.+|++|+|||||++||+.+.+.+.+.|++.. +++|||+++|+++.+.. ||||++|++|++++.|+|+++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999864 47899999999999976 999999999999999999999763
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=365.99 Aligned_cols=212 Identities=24% Similarity=0.415 Sum_probs=185.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC-HHHHhhccE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG-LKDLRVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~-l~~LR~~i~ 1294 (1467)
++++|++++|+++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999533 45999999999999999999999999999999999999999999999999998775 467889999
Q ss_pred EeccCCc--ccccchHHhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1295 IIPQEPT--LFRGSVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1295 iIpQdp~--LF~gTIR~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
++||+|. ++..|+++|+.... ..+ ++++.++++..++.+..... ...||+|||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS-----------PKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------cccCCHHHHHHHHHHH
Confidence 9999985 56789999995321 122 34567778888876654432 3479999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcccCEEEEEeCCEEEEecChhHHhc
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|++++|+||||||||++||+.+...+.+.+++.. +++|+|+++|+++.+..||+|++|++|++++.|+++++..
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999998754 4799999999999998899999999999999999999876
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=364.28 Aligned_cols=217 Identities=23% Similarity=0.411 Sum_probs=187.5
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCC--CCH
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICS--MGL 1286 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~--i~l 1286 (1467)
+.++++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++| ++|+|.+||.++.. ...
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 46999999999963 3599999999999999999999999999999999999985 48999999999864 455
Q ss_pred HHHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
..+|++++++||+|.+|+.|+++|+... +... ++.+.++++.+++.+.+... + ...+..||+|||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~----~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---L----NKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---h----cCCcccCCHHHH
Confidence 6788999999999999999999999521 1112 23456788888886554322 2 334567999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEe-----CCEEEEec
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLS-----YGKLLEYD 1432 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~-----~G~ivE~g 1432 (1467)
||+|||||++++|++|||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.+ ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999987677999999999999976 99999998 59999999
Q ss_pred ChhHHhc
Q 000481 1433 EPSKLME 1439 (1467)
Q Consensus 1433 ~p~~Ll~ 1439 (1467)
+++++.+
T Consensus 237 ~~~~~~~ 243 (259)
T PRK14260 237 VTTQIFS 243 (259)
T ss_pred CHHHHhc
Confidence 9999976
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=366.08 Aligned_cols=219 Identities=24% Similarity=0.430 Sum_probs=190.1
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCC--CC
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICS--MG 1285 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~--i~ 1285 (1467)
.+.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++| ++|+|.+||.|+.. .+
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 457999999999953 3599999999999999999999999999999999999884 89999999999975 44
Q ss_pred HHHHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1286 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
...+|++++|+||++.+|.+|+++|+... +... ++++.++++.+++.+.+.. .....+.+||+||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHHH
Confidence 56789999999999999999999999521 1111 2457788888888655432 2334566899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
|||++||||++++|+||||||||++||..+.+.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999987678999999999999875 99999999999999999999
Q ss_pred Hhcc
Q 000481 1437 LMET 1440 (1467)
Q Consensus 1437 Ll~~ 1440 (1467)
+.+.
T Consensus 254 ~~~~ 257 (272)
T PRK14236 254 LFTS 257 (272)
T ss_pred HhcC
Confidence 9863
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=355.24 Aligned_cols=212 Identities=30% Similarity=0.500 Sum_probs=191.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+. .+++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 5889999999963 24699999999999999999999999999999999999999999999876 38
Q ss_pred EEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000481 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1467)
Q Consensus 661 ~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~ 739 (1467)
+|++|++++++.|++||+.++.+ ...++..+.++.+++.+.++.+|.|..+.++.+..+|||||||||+||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988999999998754 34566777888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
++||||||++||+.+.+.+.+.+. ...+++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALE-KLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999876554 44468999999999999988999999999999999998887643
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=377.26 Aligned_cols=217 Identities=25% Similarity=0.419 Sum_probs=189.7
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCc--ceEEECCeeCCCCCHHHHh
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG--GSILIDGVDICSMGLKDLR 1290 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~--G~I~IDG~dI~~i~l~~LR 1290 (1467)
.|.|+++|++++|+. ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++ |+|.+||.++.+.+.+ +
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~--~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH--K 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--H
Confidence 478999999999963 359999999999999999999999999999999999999999 9999999999877653 5
Q ss_pred hccEEeccCCccccc-chHHhcC-CC--CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1291 VKLSIIPQEPTLFRG-SVRTNLD-PL--GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~g-TIR~NLd-p~--~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
++|++++|++.+|.. |+++|+. +. ...+ ++.+.++++.+++.++....|. +||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~-----------~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA-----------QLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh-----------hCCHHHHHHHH
Confidence 789999999999976 9999995 21 1123 2356778888888877665553 68999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC---CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS---NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~---~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|||||+++|++|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|++++.|+|+++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999887543 6899999999999865 9999999999999999999998
Q ss_pred c-cCChh
Q 000481 1439 E-TNSSF 1444 (1467)
Q Consensus 1439 ~-~~~~f 1444 (1467)
+ +...|
T Consensus 228 ~~p~~~~ 234 (362)
T TIGR03258 228 DAPADGF 234 (362)
T ss_pred hCcCcHH
Confidence 7 44444
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=363.66 Aligned_cols=218 Identities=24% Similarity=0.423 Sum_probs=186.1
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CC
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MG 1285 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~ 1285 (1467)
.--++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 22 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 336999999999963 359999999999999999999999999999999999987 699999999999853 45
Q ss_pred HHHHhhccEEeccCCcccccchHHhcCC---CCCCC-----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDP---LGLYS-----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1286 l~~LR~~i~iIpQdp~LF~gTIR~NLdp---~~~~s-----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
...+|++++|+||+|.+|.+|+++|+.. ....+ ++.+.++++..++.+.+. ......+.+||+||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHH
Confidence 6678899999999999999999999952 11222 223455666665543222 22344567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
|||++|||||+++|+||||||||++||..+.+.+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|++++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 252 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDK 252 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987778999999999999876 99999999999999999999
Q ss_pred Hhc
Q 000481 1437 LME 1439 (1467)
Q Consensus 1437 Ll~ 1439 (1467)
+.+
T Consensus 253 ~~~ 255 (271)
T PRK14238 253 IFS 255 (271)
T ss_pred HHc
Confidence 986
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=355.79 Aligned_cols=217 Identities=32% Similarity=0.557 Sum_probs=192.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
++++|++++|+.+ .++|+|+||+|++|++++|+|+||||||||+++|+|+.+|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999632 4699999999999999999999999999999999999999999999877 289
Q ss_pred EEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000481 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1467)
Q Consensus 662 yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~i 740 (1467)
|++|++++++.|++||+.++.. ...+...+.++.+++.+.++.+|.|.++.++.++.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754 344556677888889888899999999999999999999999999999999999999
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchHHH
Q 000481 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814 (1467)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~ 814 (1467)
+||||||++||+++.+.+.+.+.... +|+|+|++||+++.+..||++++|++|++++.|+.+++......+..
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~ 231 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAE 231 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHH
Confidence 99999999999999998876554443 48999999999999988999999999999999999888765544433
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=353.87 Aligned_cols=202 Identities=24% Similarity=0.355 Sum_probs=178.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+. ..+|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999953 4699999999999999999999999999999999999999999999999998764 567889999
Q ss_pred eccCCccc-ccchHHhcCCC---CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1296 IPQEPTLF-RGSVRTNLDPL---GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1296 IpQdp~LF-~gTIR~NLdp~---~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
+||++.+| ..|+++|+... ...+++++.++++..++.+..... ...||+|||||++||||++++|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 99999888 46999998532 123567788899999987654432 3469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1372 RILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
++|+|||||++||..+.+.+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998754 47899999999999976 9999999999999865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=365.63 Aligned_cols=212 Identities=26% Similarity=0.393 Sum_probs=187.5
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..++|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999953 35999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EeccCCccccc-chHHhcCCC-C-------C---CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPL-G-------L---YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~-~-------~---~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
++||++.++.+ |+++|+... . . ..++++.++++.+++.+.....| .+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHH
Confidence 99999877665 999999521 0 0 12456788999999876544433 369999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||||++.+|+||||||||++||..+.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999998763 37899999999999965 99999999999999999999865
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=355.43 Aligned_cols=203 Identities=27% Similarity=0.430 Sum_probs=174.3
Q ss_pred EEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH---h
Q 000481 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL---R 1290 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L---R 1290 (1467)
|+++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++..+. |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996422 359999999999999999999999999999999999999999999999999988876543 4
Q ss_pred -hccEEeccCCcccc-cchHHhcCC---CCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1291 -VKLSIIPQEPTLFR-GSVRTNLDP---LGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1291 -~~i~iIpQdp~LF~-gTIR~NLdp---~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
++++|+||+|.+|. .|+++|+.. ....+ ++++.++++..++.+..... ...||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHR-----------PSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHH
Confidence 68999999999996 599999953 11122 23466777777775543332 346999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcccCEEEEEeCCEEE
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVIDSDMVMVLSYGKLL 1429 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVl~~G~iv 1429 (1467)
+||||++++|+||||||||++||.++.+.+.+.|++.. .++|+|+|+|+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998764 378999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=356.97 Aligned_cols=200 Identities=23% Similarity=0.388 Sum_probs=175.0
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH---HHhhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~---~LR~~ 1292 (1467)
|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+.+++.. .+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 4699999999999999999999999999999999999999999999999999887643 46889
Q ss_pred cEEeccCCcccc-cchHHhcCCC----C---CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1293 LSIIPQEPTLFR-GSVRTNLDPL----G---LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1293 i~iIpQdp~LF~-gTIR~NLdp~----~---~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
++++||+|.+|. .|+++|+... + ...+++++++++..++.+.....| .+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999996 5999998521 1 112456788999998876554433 36999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCE
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGK 1427 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ 1427 (1467)
||++++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999998753 47999999999999986 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=342.22 Aligned_cols=172 Identities=34% Similarity=0.594 Sum_probs=162.4
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+.+..++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+.+.+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57999999997544469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000481 1296 IPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILV 1375 (1467)
Q Consensus 1296 IpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILi 1375 (1467)
+||+|.+|++|+++|+ ||+|||||++||||++++|++||
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 89999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcccCEEEEEeCCEE
Q 000481 1376 LDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVIDSDMVMVLSYGKL 1428 (1467)
Q Consensus 1376 LDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVl~~G~i 1428 (1467)
|||||++||..+.+.+.+.|++.. +++|+|+++|+++.+..||+|++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998764 47899999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=356.02 Aligned_cols=202 Identities=23% Similarity=0.394 Sum_probs=175.2
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. |+++++
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 579999999964 3599999999999999999999999999999999999999999999999999876543 578999
Q ss_pred eccCCcccc-cchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFR-GSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~-gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||++.+|. .|+++|+... ...+ ++++.++++..++.+.....| .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999985 5999999532 1122 234667788888876544333 46999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
+++|++|+|||||++||+++.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|++|+++++|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999998764 37899999999999876 9999999999999986
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=365.50 Aligned_cols=217 Identities=23% Similarity=0.442 Sum_probs=187.6
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CCH
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MGL 1286 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~l 1286 (1467)
..|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 36999999999963 359999999999999999999999999999999999997 689999999999865 345
Q ss_pred HHHhhccEEeccCCcccccchHHhcCCC----C--CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPL----G--LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~--~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
..+|++++|+||+|.+|.+|+++|+... + ...+++++++++..++.+.+.. .......+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHHH
Confidence 6788999999999999999999999521 1 1124568888888887654432 1233456899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEE-EEeCCEEEEecChhHHh
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVM-VLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIl-Vl~~G~ivE~g~p~~Ll 1438 (1467)
++|||||+++|+||||||||++||.++.+.+.+.|++..+++|+|+|+|+++.+.. |||++ +|++|+|++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999988777899999999999876 99975 57999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 269 ~ 269 (285)
T PRK14254 269 E 269 (285)
T ss_pred h
Confidence 6
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=363.71 Aligned_cols=220 Identities=25% Similarity=0.414 Sum_probs=185.1
Q ss_pred EEEEEEEEEeCCC-------CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH
Q 000481 1216 IELRQLKIRYRPN-------APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD 1288 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~-------~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~ 1288 (1467)
|+++||+++|+.+ ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.+.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 346999999999999999999999999999999999999999999999999998877643
Q ss_pred ---HhhccEEeccCCc--cc-ccchHHhcCC----CCCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCC
Q 000481 1289 ---LRVKLSIIPQEPT--LF-RGSVRTNLDP----LGLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWS 1354 (1467)
Q Consensus 1289 ---LR~~i~iIpQdp~--LF-~gTIR~NLdp----~~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS 1354 (1467)
+|++++++||+|. ++ ..|+++|+.. .... .++++.++++..++.+.. + .....+||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~----~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED------A----DKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh------h----hCChhhCC
Confidence 6788999999983 44 3699999841 1111 234567778887774221 1 22345799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEe
Q 000481 1355 AGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1355 ~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~ 1431 (1467)
||||||++||||++++|+||||||||++||.++.+.+.+.|++..+ ++|+|+|+|+++.+.. ||+|++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999987643 7899999999999975 999999999999999
Q ss_pred cChhHHhccCChhH
Q 000481 1432 DEPSKLMETNSSFS 1445 (1467)
Q Consensus 1432 g~p~~Ll~~~~~f~ 1445 (1467)
|+++++++....|.
T Consensus 233 g~~~~~~~~~~~~~ 246 (265)
T TIGR02769 233 CDVAQLLSFKHPAG 246 (265)
T ss_pred CCHHHHcCCCCHHH
Confidence 99999988444333
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=357.61 Aligned_cols=210 Identities=26% Similarity=0.427 Sum_probs=177.7
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH-HhhccE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LRVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~-LR~~i~ 1294 (1467)
|+++||+++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 579999999963 35999999999999999999999999999999999999999999999999998887654 467899
Q ss_pred EeccCCccccc-chHHhcCCC-CC--CCHHH-HHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPL-GL--YSDDE-IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~-~~--~sd~e-i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
++||++.+|.+ |+++|+... .. ..+++ ..++++..+. ++........+||||||||++||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999987 999999521 11 12222 2334444331 1222233445799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
+|++|+|||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999987653 7899999999999986 999999999999999999987
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=355.09 Aligned_cols=216 Identities=32% Similarity=0.544 Sum_probs=192.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
|+++|++++|+.. ..++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999643 23699999999999999999999999999999999999999999999876 389
Q ss_pred EEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000481 662 YVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1467)
Q Consensus 662 yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~i 740 (1467)
|++|++++++.|++||+.++.. ...+++.+.++.+.+.+.++.+|.|..+..+.++.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754 445667777888888999999998888888999999999999999999999999999
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhcCchH
Q 000481 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812 (1467)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~~~~~ 812 (1467)
+||||||++||+.+.+.+.+.+ ....+++|+|++||+++.+..||++++|++|++++.|+.+++....+.+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l-~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 230 (234)
T cd03251 160 LILDEATSALDTESERLVQAAL-ERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVY 230 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHH-HHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcch
Confidence 9999999999999999887654 4444689999999999999889999999999999999999887654443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=379.64 Aligned_cols=215 Identities=24% Similarity=0.359 Sum_probs=186.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|.. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EeccCCccccc-chHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
|+||++.+|.. |+++|+... ...+ ++++.++++..++.++....| .+||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 999999521 1122 245778889888876654443 3689999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cCC
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNS 1442 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~~ 1442 (1467)
|+++|++|||||||++||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+ +..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999987643 7899999999998865 99999999999999999999987 444
Q ss_pred hh
Q 000481 1443 SF 1444 (1467)
Q Consensus 1443 ~f 1444 (1467)
.|
T Consensus 228 ~~ 229 (369)
T PRK11000 228 RF 229 (369)
T ss_pred HH
Confidence 33
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=376.71 Aligned_cols=216 Identities=24% Similarity=0.387 Sum_probs=189.9
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
..++++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++..++.+ ++++
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999953 3599999999999999999999999999999999999999999999999999887765 5789
Q ss_pred EEeccCCccccc-chHHhcCC-CC--CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDP-LG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp-~~--~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
++++|++.+|.. |+++|+.. .. ..+ ++++.++++..++.++....|. +||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~-----------~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh-----------hCCHHHHHHHHHHH
Confidence 999999999976 99999952 11 123 2356788999999887766653 68999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cC
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TN 1441 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~ 1441 (1467)
||+++|++|+||||||+||..+...+.+.|++..+ +.|+|+|||+.+.+.. ||||+||++|+|++.|+|+++++ +.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999987653 7899999999999765 99999999999999999999987 44
Q ss_pred Chh
Q 000481 1442 SSF 1444 (1467)
Q Consensus 1442 ~~f 1444 (1467)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 444
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=368.57 Aligned_cols=215 Identities=25% Similarity=0.426 Sum_probs=192.4
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
..|+++||+.+|. ...+++|+|++|++||.+.++|||||||||++++|.||..|++|+|.+||.||+.++.+ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 3699999999997 45699999999999999999999999999999999999999999999999999999987 5889
Q ss_pred EEeccCCccccc-chHHhcCCCC-----CCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDPLG-----LYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCL 1363 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp~~-----~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~L 1363 (1467)
++|+|+..||+- ||++|+. |+ ...++ .+.++|+.+++.++-...|. .|||||+||+||
T Consensus 80 g~VFQ~YALFPHltV~~NVa-fGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVAL 147 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVA-FGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-----------QLSGGQQQRVAL 147 (352)
T ss_pred ceeecCcccCCCCcHHHHhh-hhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh-----------hhChHHHHHHHH
Confidence 999999999975 9999985 22 12333 67899999999998877775 579999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-
Q 000481 1364 GRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME- 1439 (1467)
Q Consensus 1364 ARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~- 1439 (1467)
||||..+|++|+||||-|+||..-...+|.-+++.. .|.|.|.|||+-+.... +|||.||++|+|...|+|+|+..
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999988888887643 38899999999887654 99999999999999999999998
Q ss_pred cCChh
Q 000481 1440 TNSSF 1444 (1467)
Q Consensus 1440 ~~~~f 1444 (1467)
+...|
T Consensus 228 P~~~f 232 (352)
T COG3842 228 PATRF 232 (352)
T ss_pred cchHH
Confidence 55555
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=367.18 Aligned_cols=214 Identities=31% Similarity=0.462 Sum_probs=182.3
Q ss_pred eEEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCC----CHH
Q 000481 1215 RIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM----GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i----~l~ 1287 (1467)
.|+++|++++|+++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996422 3599999999999999999999999999999999999999999999999999753 346
Q ss_pred HHhhccEEeccCC--cccccchHHhcCCC---CCCCH----HHHHHHHHHcCCc-hHHhhCCCCcccccccCCCCCChhH
Q 000481 1288 DLRVKLSIIPQEP--TLFRGSVRTNLDPL---GLYSD----DEIWKALEKCQLK-TTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sd----~ei~~aL~~~~l~-~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
..|++++++||+| .+|..|+++|+... ...+. +.+.++++.+++. +... ....+||+||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS-----------KSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhh-----------CCcccCCHHH
Confidence 6788999999998 57888999999410 11222 2356677777775 3322 2235799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChh
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPS 1435 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~ 1435 (1467)
|||++||||++++|++|||||||++||+.+.+.+.+.|++.. ++.|||++||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998764 47899999999999864 9999999999999999999
Q ss_pred HHhc
Q 000481 1436 KLME 1439 (1467)
Q Consensus 1436 ~Ll~ 1439 (1467)
++++
T Consensus 231 ~~~~ 234 (287)
T PRK13641 231 EIFS 234 (287)
T ss_pred HHhc
Confidence 9875
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=360.70 Aligned_cols=211 Identities=25% Similarity=0.388 Sum_probs=181.8
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC--------HH
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG--------LK 1287 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~--------l~ 1287 (1467)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..
T Consensus 4 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 4 IEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 899999999963 35999999999999999999999999999999999999999999999999987542 35
Q ss_pred HHhhccEEeccCCcccc-cchHHhcCC----CCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1288 DLRVKLSIIPQEPTLFR-GSVRTNLDP----LGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~-gTIR~NLdp----~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
.+|++++++||+|.+|. .|+++|+.. ..... ++.+.++++..++.+.. .....+||+|||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~Gq~ 150 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-----------TSYPRRLSGGQQ 150 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----------hCChhhCChHHH
Confidence 67889999999999886 699999952 11122 23456667777665432 223467999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
||++||||++++|++|||||||++||..+.+.+.+.|++.. +++|+|+|+|+++.+.+ ||+|++|++|++++.|++++
T Consensus 151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 230 (250)
T PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKA 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998764 37899999999999976 99999999999999999999
Q ss_pred Hhc
Q 000481 1437 LME 1439 (1467)
Q Consensus 1437 Ll~ 1439 (1467)
+.+
T Consensus 231 ~~~ 233 (250)
T PRK11264 231 LFA 233 (250)
T ss_pred Hhc
Confidence 876
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=337.75 Aligned_cols=200 Identities=30% Similarity=0.443 Sum_probs=172.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
.|+++|++..|+. ++.+|+||||+|++||+++|+|++||||||||++|.|..+|++|+|.++|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999974 46899999999999999999999999999999999999999999999887
Q ss_pred -eEEEEccCCcCC-CCCHHHHHhcCCC------------CCHHHHH---HHHHHhcchHHHhcCCCCCCccccCCCCccC
Q 000481 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP------------MDKARYD---KAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1467)
Q Consensus 659 -~i~yv~Q~~~l~-~~ti~eNi~~g~~------------~~~~~~~---~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LS 721 (1467)
+|||++|++.|. ..|+.+|++.|+- +.++... ++++..++.+..- .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 499999998764 5699999998742 2333333 3444445444332 4677999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEe
Q 000481 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQS 799 (1467)
Q Consensus 722 GGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~ 799 (1467)
|||+|||+|||||+++|+|+|-|||+++|||.+++++++.+.+.. ..|.|+|+.-|+++...+ ||||+-|++|+|++.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999998766543 468999999999999865 999999999999999
Q ss_pred cChHHHH
Q 000481 800 GNYQELL 806 (1467)
Q Consensus 800 G~~~~l~ 806 (1467)
|+.+|+-
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9999864
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=358.65 Aligned_cols=212 Identities=24% Similarity=0.371 Sum_probs=179.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH-Hhhcc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~-LR~~i 1293 (1467)
-|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+..+ .|+++
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999953 45999999999999999999999999999999999999999999999999999887654 67889
Q ss_pred EEeccCCccccc-chHHhcCCCCC-CCH----HHHHHHHHHc-CCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDPLGL-YSD----DEIWKALEKC-QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp~~~-~sd----~ei~~aL~~~-~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
+++||++.+|.+ |+++|+..... .+. +++.++++.. ++.+. .+ .....||+|||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~-------~~----~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHER-------RI----QRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHH-------Hh----CchhhCCHHHHHHHHHHHH
Confidence 999999999985 99999953111 122 2233334433 12211 12 2345799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++++|+||||||||++||.++.+.+.+.|++.. +++|+|+++|+++.+.+ ||||++|++|++++.|+++++.+
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999999998754 48999999999998765 99999999999999999999975
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=363.78 Aligned_cols=220 Identities=23% Similarity=0.406 Sum_probs=190.7
Q ss_pred CCcceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCC---
Q 000481 1211 PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDIC--- 1282 (1467)
Q Consensus 1211 p~~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~--- 1282 (1467)
|..+.|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 56788999999999963 3599999999999999999999999999999999999875 7999999998874
Q ss_pred -CCCHHHHhhccEEeccCCcccccchHHhcCCC----C----CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCC
Q 000481 1283 -SMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL----G----LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENW 1353 (1467)
Q Consensus 1283 -~i~l~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~----~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nL 1353 (1467)
....+.+|++++|+||+|.+|.+|+++|+... + ...++++.++++.+++.+.+. ........+|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccC
Confidence 33456789999999999999999999999521 1 112466788888888764332 2233445689
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1354 S~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
|+|||||++||||++++|++|||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999987667899999999999975 9999999999999999
Q ss_pred ChhHHhc
Q 000481 1433 EPSKLME 1439 (1467)
Q Consensus 1433 ~p~~Ll~ 1439 (1467)
+++++..
T Consensus 243 ~~~~~~~ 249 (265)
T PRK14252 243 ATDTIFI 249 (265)
T ss_pred CHHHHHh
Confidence 9999875
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=359.65 Aligned_cols=212 Identities=26% Similarity=0.394 Sum_probs=181.9
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCC------CCCHHHH
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC------SMGLKDL 1289 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~------~i~l~~L 1289 (1467)
++++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++ ......+
T Consensus 3 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 789999999953 35999999999999999999999999999999999999999999999999984 1234567
Q ss_pred hhccEEeccCCccccc-chHHhcC--CCC--CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1290 RVKLSIIPQEPTLFRG-SVRTNLD--PLG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1290 R~~i~iIpQdp~LF~g-TIR~NLd--p~~--~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
|++++|+||+|.+|.+ |+++|+. +.. ..+ .+++.++++..++.++....| .+||||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LS~G~~qr 149 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP-----------LHLSGGQQQR 149 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHH
Confidence 8999999999999976 9999995 111 112 234566777777765544333 4799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
++||||++++|+||||||||++||.++...+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 999999999999999999999999999999999998764 47999999999999975 9999999999999999999876
Q ss_pred cc
Q 000481 1439 ET 1440 (1467)
Q Consensus 1439 ~~ 1440 (1467)
++
T Consensus 230 ~~ 231 (242)
T PRK11124 230 QP 231 (242)
T ss_pred Cc
Confidence 53
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=361.14 Aligned_cols=216 Identities=23% Similarity=0.423 Sum_probs=186.9
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCCC--CHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICSM--GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~i--~l~ 1287 (1467)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+.+| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999963 4599999999999999999999999999999999999875 799999999999753 345
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++|+||+|.+|..|+++|+... +..+ ++++.++++.+++.+.+... .......||+||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD-------LKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH-------hhCCcccCCHHHHH
Confidence 778999999999999999999999521 1112 23466788888876543321 22345679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|+||||||||++||..+...+.+.|++..++.|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987767899999999999876 9999999999999999999997
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
.
T Consensus 235 ~ 235 (251)
T PRK14270 235 L 235 (251)
T ss_pred c
Confidence 6
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=358.94 Aligned_cols=211 Identities=21% Similarity=0.365 Sum_probs=182.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCC--CHHHHhhcc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM--GLKDLRVKL 1293 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i--~l~~LR~~i 1293 (1467)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 789999999953 4599999999999999999999999999999999999999999999999999864 345678899
Q ss_pred EEeccCCcccc-cchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEPTLFR-GSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp~LF~-gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
+++||++.+|. .|+++|+... ...+ ++++.++++..++.+.... ....||+|||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHHH
Confidence 99999999886 5999999521 1112 2345667777776554333 2357999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||++++|++|+|||||++||.++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 99999999999999999999999999999998754 47899999999999865 99999999999999999999876
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=362.11 Aligned_cols=216 Identities=21% Similarity=0.432 Sum_probs=186.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~--i~l~ 1287 (1467)
.|+++||+++|+. .++|+|+||+|++||++||+|++|||||||+++|.|++. |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 4999999999963 359999999999999999999999999999999999986 479999999999853 4566
Q ss_pred HHhhccEEeccCCcccccchHHhcCCCC---CC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPLG---LY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
.+|++++++||+|.+|+.|+++|+.... .. .++++.++++.+++.+.+... ....+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK-------LKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH-------hcCCcccCCHHHHHHH
Confidence 7899999999999999899999995321 11 134566678888886654321 2344568999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEe---------CCEEEEe
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLS---------YGKLLEY 1431 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~---------~G~ivE~ 1431 (1467)
+||||++++|+||||||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||||++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999987767899999999999865 89999998 8999999
Q ss_pred cChhHHhc
Q 000481 1432 DEPSKLME 1439 (1467)
Q Consensus 1432 g~p~~Ll~ 1439 (1467)
|+++++.+
T Consensus 241 ~~~~~~~~ 248 (264)
T PRK14243 241 DRTEKIFN 248 (264)
T ss_pred CCHHHHHh
Confidence 99999986
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=365.15 Aligned_cols=213 Identities=26% Similarity=0.409 Sum_probs=183.7
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC--CCHHHHhhcc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS--MGLKDLRVKL 1293 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~--i~l~~LR~~i 1293 (1467)
|+++|++++|+. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.+++. .+...+|++|
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 789999999963 3459999999999999999999999999999999999999999999999999863 3345688999
Q ss_pred EEeccCC--cccccchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEP--TLFRGSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp--~LF~gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
+|+||+| .+|..|+++|+... ...+ .+++.++++.+++.++... . ..+||+|||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-------~----~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-------P----PHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-------C----hhhCCHHHHHHHHHH
Confidence 9999998 57889999999511 0122 2456778888888654332 2 246999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
||++++|++|||||||++||+.+...+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++++.
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998764 37899999999999975 999999999999999999998763
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=357.84 Aligned_cols=209 Identities=27% Similarity=0.405 Sum_probs=185.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+. .++++|+||+|+|||++||+|++|||||||+++|.|+++|.+|+|.+||.++.+.+. .|+.+++
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 579999999964 359999999999999999999999999999999999999999999999999987664 3688999
Q ss_pred eccCCccccc-chHHhcCC-C---C---CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDP-L---G---LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp-~---~---~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++|+.. + + ...++++.++++..++.++....| .+||+|||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999976 99999852 1 1 112456778888888877765544 37899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+++|++|||||||+++|..+.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 999999999999999999999999999987643 7999999999999876 89999999999999999999876
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=364.32 Aligned_cols=213 Identities=23% Similarity=0.365 Sum_probs=188.2
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
-.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 36999999999963 3599999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEeccCCcccc-cchHHhcCCCC--------CC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1294 SIIPQEPTLFR-GSVRTNLDPLG--------LY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1294 ~iIpQdp~LF~-gTIR~NLdp~~--------~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
+|+||++.+|. .|+++|+.... .. .++.++++++..++.+.... ...+||+|||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHHH
Confidence 99999999875 59999996321 01 23467888888888765433 2357999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
+||||++++|++|||||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999987643 7899999999998866 9999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 5
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=372.03 Aligned_cols=224 Identities=23% Similarity=0.404 Sum_probs=185.0
Q ss_pred eEEEEEEEEEeCC--CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCC---cceEEECCeeCCCCCHHHH
Q 000481 1215 RIELRQLKIRYRP--NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA---GGSILIDGVDICSMGLKDL 1289 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~--~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~---~G~I~IDG~dI~~i~l~~L 1289 (1467)
-++++|++++|+. +...+++||||+|++||.+||||+||||||||+++|.|+++|. +|+|.+||.|+.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5999999999953 2245999999999999999999999999999999999999996 9999999999999987776
Q ss_pred h----hccEEeccCC--cccc-cchHHhc----CCCCCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCC
Q 000481 1290 R----VKLSIIPQEP--TLFR-GSVRTNL----DPLGLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWS 1354 (1467)
Q Consensus 1290 R----~~i~iIpQdp--~LF~-gTIR~NL----dp~~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS 1354 (1467)
| ++|++||||| .++. -|+.+|+ ...+..+. +.+.+.|+.+++.+ +.+ .+.....+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~-------~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE-------ARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-------hHH-HhcCCcccCC
Confidence 4 4799999999 4554 3777765 22222232 34556677776632 111 1344556899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEe
Q 000481 1355 AGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1355 ~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~ 1431 (1467)
||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999987643 7899999999999975 999999999999999
Q ss_pred cChhHHhc-cCChhHH
Q 000481 1432 DEPSKLME-TNSSFSK 1446 (1467)
Q Consensus 1432 g~p~~Ll~-~~~~f~~ 1446 (1467)
|+++++++ +...|.+
T Consensus 244 g~~~~i~~~p~~pyt~ 259 (330)
T PRK09473 244 GNARDVFYQPSHPYSI 259 (330)
T ss_pred CCHHHHHhCCCCHHHH
Confidence 99999997 4444544
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=362.23 Aligned_cols=211 Identities=24% Similarity=0.422 Sum_probs=186.7
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..++|+.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999953 459999999999999999999999999999999999999999999999999998888888999999
Q ss_pred eccCCccccc-chHHhcCCC--------CCC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHH
Q 000481 1296 IPQEPTLFRG-SVRTNLDPL--------GLY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCL 1363 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp~--------~~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~L 1363 (1467)
+||++.+|.+ |+++|++.. +.. .++++.++++..++.+..... ...||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----------LTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----------cccCCHHHHHHHHH
Confidence 9999999877 999999632 111 234577888888886554332 34699999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1364 GRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1364 ARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||++++|++|||||||++||.++.+.+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999998754 47899999999999875 99999999999999999999875
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=360.16 Aligned_cols=216 Identities=26% Similarity=0.431 Sum_probs=186.9
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCCC--CHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICSM--GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~i--~l~ 1287 (1467)
-|+++|++++|+. ..+|+|+||+|++||.+||+|+||||||||+++|.|+.++ ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4999999999953 3599999999999999999999999999999999999763 489999999999876 456
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
..|++++++||+|.+|++|+++|+... +... ++.+.++++.+++.+.+. +.....+.+||+||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHHH
Confidence 788999999999999999999999631 1111 335667777777754432 2234456689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++.+|+++||||||++||.++.+.+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999975 9999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 237 ~ 237 (253)
T PRK14261 237 E 237 (253)
T ss_pred h
Confidence 6
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=359.22 Aligned_cols=203 Identities=27% Similarity=0.359 Sum_probs=178.3
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++
T Consensus 12 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 5999999999963 35999999999999999999999999999999999999999999999998763 5688999
Q ss_pred EeccCCcccc-cchHHhcCCC-CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCC
Q 000481 1295 IIPQEPTLFR-GSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372 (1467)
Q Consensus 1295 iIpQdp~LF~-gTIR~NLdp~-~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ 1372 (1467)
|+||+|.+|. .|+++|+... ....++++.++++..++.+.... ...+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999997 6999999632 12235678888999888765433 235799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChh
Q 000481 1373 ILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPS 1435 (1467)
Q Consensus 1373 ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~ 1435 (1467)
+|||||||++||..+.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999998753 37899999999999865 9999999999999988754
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=354.39 Aligned_cols=201 Identities=26% Similarity=0.391 Sum_probs=174.3
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH---HHHhhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l---~~LR~~ 1292 (1467)
|+++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 5789999999643 459999999999999999999999999999999999999999999999999987754 357889
Q ss_pred cEEeccCCccccc-chHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1293 LSIIPQEPTLFRG-SVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1293 i~iIpQdp~LF~g-TIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
++++||+|.+|.+ |+++|+... ...+ ++++.++++..++.+.....| .+||+|||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHHH
Confidence 9999999999985 999999521 1112 345778888888866544332 36999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEE
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKL 1428 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~i 1428 (1467)
||++++|+||||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998753 47999999999999986 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=364.74 Aligned_cols=213 Identities=27% Similarity=0.410 Sum_probs=182.6
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCC--CCCHHHHhhcc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDIC--SMGLKDLRVKL 1293 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~--~i~l~~LR~~i 1293 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999953 45999999999999999999999999999999999999999999999999985 34456788999
Q ss_pred EEeccCCc--ccccchHHhcCCC---CCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEPT--LFRGSVRTNLDPL---GLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp~--LF~gTIR~NLdp~---~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
+++||+|. +|..|+.+|+... ...++ +++.++++..++.++.. . ...+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-------Q----PIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-------C----CchhCCHHHHHHHHHH
Confidence 99999986 5778999998521 11222 34567788888765432 2 2357999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhccC
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMETN 1441 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~~ 1441 (1467)
|||+.+|+||||||||++||..+...+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++|++++.|+++++++..
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACT 227 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCh
Confidence 99999999999999999999999999999998754 47899999999999965 9999999999999999999987643
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=362.10 Aligned_cols=217 Identities=27% Similarity=0.414 Sum_probs=186.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCCCC-HHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICSMG-LKD 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~i~-l~~ 1288 (1467)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999963 4699999999999999999999999999999999999986 6999999999998763 456
Q ss_pred HhhccEEeccCCcccccchHHhcCCC----CCCCHHHH----HHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1289 LRVKLSIIPQEPTLFRGSVRTNLDPL----GLYSDDEI----WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1289 LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~sd~ei----~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
+|++++|+||+|.+|..|+++|+... ...+++++ .++++.+++.+.. ++.......+||+|||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHHHH
Confidence 78999999999999999999999521 12344443 3456666665432 122344567899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++||||++++|++|||||||++||..+.+.+.+.|++..+++|||+|+|+++.+.+ ||||++|++|++++.|+++++.+
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667899999999999876 99999999999999999999987
Q ss_pred c
Q 000481 1440 T 1440 (1467)
Q Consensus 1440 ~ 1440 (1467)
.
T Consensus 252 ~ 252 (276)
T PRK14271 252 S 252 (276)
T ss_pred C
Confidence 3
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=377.68 Aligned_cols=198 Identities=27% Similarity=0.431 Sum_probs=175.9
Q ss_pred cceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH----hhccEEeccCCccccc-
Q 000481 1231 LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL----RVKLSIIPQEPTLFRG- 1305 (1467)
Q Consensus 1231 ~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L----R~~i~iIpQdp~LF~g- 1305 (1467)
.+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+.+.+..++ |++++|+||++.+|..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 38999999999999999999999999999999999999999999999999998887654 3589999999999975
Q ss_pred chHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q 000481 1306 SVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDE 1378 (1467)
Q Consensus 1306 TIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDE 1378 (1467)
|+++|+... ...+ ++++.++++.+++.++....| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999999521 1122 346778899999877665544 3689999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1379 ANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1379 aTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||++||+.+.+.+++.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+|+++++
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 999999999999999998763 47899999999999865 99999999999999999999987
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=365.75 Aligned_cols=215 Identities=27% Similarity=0.408 Sum_probs=182.5
Q ss_pred EEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCC----CHHH
Q 000481 1216 IELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM----GLKD 1288 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i----~l~~ 1288 (1467)
|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996432 3599999999999999999999999999999999999999999999999999764 3567
Q ss_pred HhhccEEeccCC--cccccchHHhcCCC---CCCCHHH----HHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1289 LRVKLSIIPQEP--TLFRGSVRTNLDPL---GLYSDDE----IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1289 LR~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sd~e----i~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
+|++|+|+||+| .+|++|+++|+... ...++++ +.++++..++.+.. + .....+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~----~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL------F----EKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh------h----hCCcccCCHHHHH
Confidence 889999999998 68889999999521 1123332 44566666664211 1 2234579999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
|++||||++++|++|||||||++||+++.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998754 37899999999999865 999999999999999999998
Q ss_pred hcc
Q 000481 1438 MET 1440 (1467)
Q Consensus 1438 l~~ 1440 (1467)
++.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 763
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=350.11 Aligned_cols=206 Identities=28% Similarity=0.439 Sum_probs=188.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+.. .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 48899999999743 35799999999999999999999999999999999999999999998876 38
Q ss_pred EEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000481 661 AYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1467)
Q Consensus 661 ~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~i 740 (1467)
+|++|++.+++.|++||+.+......++..++++..++.+.+..+|.|.++..++++.+||||||||++||||++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987766667778888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecC
Q 000481 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1467)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~ 801 (1467)
+||||||++||+.+.+.+.+.+ ....+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l-~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTI-REAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHH-HHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999887654 44445789999999999998899999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=356.73 Aligned_cols=209 Identities=26% Similarity=0.388 Sum_probs=183.0
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+. .|+.+++
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 579999999963 359999999999999999999999999999999999999999999999999987653 4789999
Q ss_pred eccCCccccc-chHHhcCCCC---CC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDPLG---LY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp~~---~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++|+.... .. .++++.++++..++.+..... ..+||+||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999995211 11 234567788888876554432 247999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+++|++++|||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|+++|.|+++++++
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999999999987543 7999999999999876 99999999999999999999976
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=355.07 Aligned_cols=203 Identities=27% Similarity=0.364 Sum_probs=175.7
Q ss_pred EEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
|+++|++++|+... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. +|+++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999996421 469999999999999999999999999999999999999999999999999873 46789
Q ss_pred EEeccCCcccc-cchHHhcCCC---CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1294 SIIPQEPTLFR-GSVRTNLDPL---GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1294 ~iIpQdp~LF~-gTIR~NLdp~---~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
+++||+|.+|. .|+++|+... ... .++++.++++..++.+.....| .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999997 6999998521 111 2356778888888876554433 369999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEe--CCEEEEecCh
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLS--YGKLLEYDEP 1434 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~--~G~ivE~g~p 1434 (1467)
|++++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|+ +|+++|.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998763 37899999999998865 99999999 7999998763
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=359.36 Aligned_cols=216 Identities=21% Similarity=0.324 Sum_probs=188.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCCC--CHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICSM--GLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~i--~l~ 1287 (1467)
.+.+++.+++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++| ++|+|.+||.++... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4889999999953 3599999999999999999999999999999999999986 799999999999753 445
Q ss_pred HHhhccEEeccCCcccccchHHhcCCCCC------CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPLGL------YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~~~------~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
.+|++++++||+|.+|..|+++|+..... ..++++.++++.+++.+.+... ..+...+||+|||||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-------hhCCcccCCHHHHHHH
Confidence 67889999999999999999999963211 1235678899999887655432 2345678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEe--------CCEEEEec
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLS--------YGKLLEYD 1432 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~--------~G~ivE~g 1432 (1467)
+||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|+|+++.+.+ ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999987678899999999999876 99999996 89999999
Q ss_pred ChhHHhc
Q 000481 1433 EPSKLME 1439 (1467)
Q Consensus 1433 ~p~~Ll~ 1439 (1467)
+++++++
T Consensus 239 ~~~~~~~ 245 (261)
T PRK14263 239 PTAQIFQ 245 (261)
T ss_pred CHHHHHh
Confidence 9999987
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=360.44 Aligned_cols=217 Identities=25% Similarity=0.426 Sum_probs=187.5
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----cceEEECCeeCCC--CCH
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA-----GGSILIDGVDICS--MGL 1286 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~-----~G~I~IDG~dI~~--i~l 1286 (1467)
+.|+++|++++|+. +.+|+|+||+|++||.+||+|++|||||||+++|.|+++|+ +|+|.+||.|++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 46999999999953 35999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HHHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
..+|+.++++||++.+|..|+++|+... +..+ ++.+.++++.+++.+++..+ ......+||+|||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-------IHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHHH
Confidence 6788999999999999999999999521 1112 23467788888887655432 2344568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeC-----CEEEE
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSY-----GKLLE 1430 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~-----G~ivE 1430 (1467)
||++||||++++|++|||||||++||.++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998742 48999999999999875 899999999 99999
Q ss_pred ecChhHHhc
Q 000481 1431 YDEPSKLME 1439 (1467)
Q Consensus 1431 ~g~p~~Ll~ 1439 (1467)
.|+|+++.+
T Consensus 237 ~~~~~~~~~ 245 (261)
T PRK14258 237 FGLTKKIFN 245 (261)
T ss_pred eCCHHHHHh
Confidence 999999986
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=361.19 Aligned_cols=217 Identities=21% Similarity=0.389 Sum_probs=187.3
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCC--CCH
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICS--MGL 1286 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~--i~l 1286 (1467)
-.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 36999999999963 3599999999999999999999999999999999999863 69999999999864 344
Q ss_pred HHHhhccEEeccCCcccccchHHhcCCCC---CC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPLG---LY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~LF~gTIR~NLdp~~---~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
..+|++++|+||+|.+|.+|+++|+.... .. .++++.++++.+++.+.+... + ......||+|||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~----~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK---L----KEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHH---h----cCCcccCCHHHHHH
Confidence 56789999999999999999999995311 11 244567788888886554321 2 23456799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEe---------CCEEEE
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLS---------YGKLLE 1430 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~---------~G~ivE 1430 (1467)
++|||||+++|++|||||||++||..+...+.+.|++..+++|||+|+|+++.+.. ||||++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999987778999999999999965 99999998 899999
Q ss_pred ecChhHHhc
Q 000481 1431 YDEPSKLME 1439 (1467)
Q Consensus 1431 ~g~p~~Ll~ 1439 (1467)
.|+++++.+
T Consensus 250 ~g~~~~~~~ 258 (274)
T PRK14265 250 FSPTEQMFG 258 (274)
T ss_pred eCCHHHHHh
Confidence 999999986
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=358.31 Aligned_cols=216 Identities=23% Similarity=0.414 Sum_probs=186.6
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCC-CCCHHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDIC-SMGLKD 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~-~i~l~~ 1288 (1467)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4899999999963 4599999999999999999999999999999999999986 5999999999986 456678
Q ss_pred HhhccEEeccCCcccccchHHhcCCC---CCC-C----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1289 LRVKLSIIPQEPTLFRGSVRTNLDPL---GLY-S----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1289 LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~-s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
+|+.++|+||+|.+|.+|+++|+... ... . ++++.++++.+++.+.+. ........+||+|||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHHH
Confidence 89999999999999999999999521 111 1 234566777777765432 12233456799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
++||||++++|+||||||||++||..+.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999987677999999999999887 99999999999999999999875
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=366.66 Aligned_cols=216 Identities=23% Similarity=0.333 Sum_probs=181.5
Q ss_pred cceEEEEEEEEEeCCCC---CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC----C-
Q 000481 1213 KGRIELRQLKIRYRPNA---PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS----M- 1284 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~---~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~----i- 1284 (1467)
.|.|+++|++++|+... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 47899999999996432 259999999999999999999999999999999999999999999999999853 2
Q ss_pred CHHHHhhccEEeccCC--cccccchHHhcCCC---CCCCHH----HHHHHHHHcCCc-hHHhhCCCCcccccccCCCCCC
Q 000481 1285 GLKDLRVKLSIIPQEP--TLFRGSVRTNLDPL---GLYSDD----EIWKALEKCQLK-TTISSLPNKLDSSVSDEGENWS 1354 (1467)
Q Consensus 1285 ~l~~LR~~i~iIpQdp--~LF~gTIR~NLdp~---~~~sd~----ei~~aL~~~~l~-~~i~~lp~gLdt~v~e~G~nLS 1354 (1467)
+...+|++++|+||+| .+|.+|+++|+... ...+.+ .+.++++..++. +. ......+||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~~LS 152 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDY-----------VKRSPFELS 152 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH-----------hcCChhhCC
Confidence 4567889999999998 47888999999521 112332 234455555552 22 123345799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEe
Q 000481 1355 AGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1355 ~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~ 1431 (1467)
+|||||++||||++++|++|||||||++||+.+.+.+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999998764 37899999999998865 999999999999999
Q ss_pred cChhHHhc
Q 000481 1432 DEPSKLME 1439 (1467)
Q Consensus 1432 g~p~~Ll~ 1439 (1467)
|+++++++
T Consensus 233 g~~~~~~~ 240 (289)
T PRK13645 233 GSPFEIFS 240 (289)
T ss_pred CCHHHHhc
Confidence 99998875
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=353.37 Aligned_cols=197 Identities=27% Similarity=0.400 Sum_probs=169.4
Q ss_pred EEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEe
Q 000481 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1467)
Q Consensus 1217 ~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iI 1296 (1467)
+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 46899999953 35999999999999999999999999999999999999999999999998874 578899999
Q ss_pred ccCCcc---cccchHHhcCCCCC-----------CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1297 PQEPTL---FRGSVRTNLDPLGL-----------YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1297 pQdp~L---F~gTIR~NLdp~~~-----------~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
||+|.+ |..|+++|+..... ..++++.++++..++.+..... ..+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHH
Confidence 999986 66899999852111 1234678889998887654432 2469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
||||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|+|+++.+.+ ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998754 57899999999999976 8999999986 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=322.95 Aligned_cols=193 Identities=24% Similarity=0.399 Sum_probs=173.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
|+|+||+..|+.+ .++|+||||+|++||++-|+||||||||||+++|.++..|++|+|.++|
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999864 6799999999999999999999999999999999999999999999877
Q ss_pred eEEEEccCCcC-CCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 659 SIAYVSQTSWI-QSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 659 ~i~yv~Q~~~l-~~~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
+||+|+|+.-| ..-||.||+.|... .. ++++.++++..+|.+....+|. .|||||||||+|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 59999999875 56699999999643 12 3567778999999998888885 799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcC-CEEEEEeCCeEeEec
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSG 800 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~-d~i~~l~~G~i~~~G 800 (1467)
|||+..+|++||-||||-+|||..+..|++........|.||+++||+.+.+... -+++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999999876555567899999999999999886 789999999998654
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=370.87 Aligned_cols=203 Identities=25% Similarity=0.350 Sum_probs=172.9
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
|+++|++++|+.++ ..++|+|+||+|++||+++|+|+||||||||+++|.|+.+|++|+|.++|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 24799999999999999999999999999999999999999999998876
Q ss_pred -eEEEEccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 659 -~i~yv~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
+|+|++|++.++. .|++|||.++.. .+. ++..++++..++.+..+ ..+.+|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-----------~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-----------SYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 3899999998875 799999998632 222 33455566666654333 456789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
|||||+.+|+++|||||||+||+.+.+.+.+.+.+... .|.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999998865554433 38999999999999876 99999999999999999999876
Q ss_pred c
Q 000481 808 A 808 (1467)
Q Consensus 808 ~ 808 (1467)
.
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 4
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=349.65 Aligned_cols=200 Identities=28% Similarity=0.425 Sum_probs=175.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+.. . .|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5799999999632 2 39999999999999999999999999999999999999999999999987654 4678999
Q ss_pred eccCCccccc-chHHhcCCC-C---C---CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDPL-G---L---YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp~-~---~---~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++|+... . . ..++++.++++.+++.+.....| .+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 9999999986 999999621 1 1 13456888999999877655544 36899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
+++|++|||||||++||.++.+.+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999998764 37899999999999976 9999999999998865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=355.30 Aligned_cols=208 Identities=25% Similarity=0.427 Sum_probs=183.5
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|.. + +|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 578999999963 3 8999999999999999999999999999999999999999999999999987655 3789999
Q ss_pred eccCCcccc-cchHHhcCC---CCCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFR-GSVRTNLDP---LGLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~-gTIR~NLdp---~~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||++.+|. .|+++|+.. .... .++++.++++.+++.+++...+ .+||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999995 699999952 1111 2345778899998877655443 46999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+++|++|+|||||++||..+.+.+.+.+++..+ ++|+|+++|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999999999997543 7999999999999876 99999999999999999999876
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=352.61 Aligned_cols=206 Identities=24% Similarity=0.329 Sum_probs=178.9
Q ss_pred eEEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH---H
Q 000481 1215 RIELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---L 1289 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~---L 1289 (1467)
-|+++|++++|+.+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 599999999996532 25999999999999999999999999999999999999999999999999998887654 2
Q ss_pred -hhccEEeccCCccccc-chHHhcCC---CCCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1290 -RVKLSIIPQEPTLFRG-SVRTNLDP---LGLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1290 -R~~i~iIpQdp~LF~g-TIR~NLdp---~~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
+++++++||+|.+|.+ |+++|+.. +... .++++.++++..++.+.....| ..||+|||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3689999999999885 99999852 1111 2346778889988876655443 3689999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcccCEEEEEeCCEEEEe
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVIDSDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVl~~G~ivE~ 1431 (1467)
++|||||+++|++|||||||++||.++.+.+.+.|++.. .++|||+|+|+++.+..||+|++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998753 27899999999999988999999999999874
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=359.98 Aligned_cols=216 Identities=25% Similarity=0.469 Sum_probs=184.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC-----CcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-----AGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~-----~~G~I~IDG~dI~~--i~l~ 1287 (1467)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 4899999999963 3599999999999999999999999999999999999974 69999999999864 4456
Q ss_pred HHhhccEEeccCCcccc-cchHHhcCC-C---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1288 DLRVKLSIIPQEPTLFR-GSVRTNLDP-L---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~-gTIR~NLdp-~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
.+|+.++++||++.+|. .|+++|+.. . +..+ ++.+.++++.+++.+.+.. .......+||+|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-------RLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 78899999999999997 499999842 1 1112 3456677888887544321 12334467999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEe------CCEEEEe
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLS------YGKLLEY 1431 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~------~G~ivE~ 1431 (1467)
||++||||++++|++|||||||++||..+...+.+.|++..+++|+|+|+|+++.+.. ||+|++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999987667899999999999865 99999997 8999999
Q ss_pred cChhHHhc
Q 000481 1432 DEPSKLME 1439 (1467)
Q Consensus 1432 g~p~~Ll~ 1439 (1467)
|+|+++++
T Consensus 235 ~~~~~~~~ 242 (258)
T PRK14241 235 DDTEKIFS 242 (258)
T ss_pred CCHHHHHh
Confidence 99999976
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=371.60 Aligned_cols=203 Identities=31% Similarity=0.448 Sum_probs=175.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~y 662 (1467)
.++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .|||
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4889999999942 24699999999999999999999999999999999999999999999987 3999
Q ss_pred EccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
|+|++.+|. .||+|||.|+.. .+ .++.+++++.+++.+..+. ...+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDR-----------KPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999885 699999999753 22 2345667777777655543 4568999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcC
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
+.+|+++|||||||+||+.+.+.+.+.+.+...+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 9999999999999999999999988766544333 8999999999998764 9999999999999999999997653
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=357.21 Aligned_cols=211 Identities=27% Similarity=0.396 Sum_probs=185.7
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+++++++
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999963 459999999999999999999999999999999999999999999999999998888888899999
Q ss_pred eccCCcc-cccchHHhcCCCC----C---CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTL-FRGSVRTNLDPLG----L---YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~L-F~gTIR~NLdp~~----~---~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||++.+ +..|+++|+.... . ..++.+.++++..++.+..... ...||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD-----------YPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCC-----------cccCCHHHHHHHHHHHHH
Confidence 9999987 6779999985311 1 1234577888888886544332 347999999999999999
Q ss_pred c------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1368 L------KRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1368 L------r~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
+ ++|++|||||||++||+.+.+.+.+.|++.. ++.|||+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999998764 47899999999999874 9999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 230 ~ 230 (258)
T PRK13548 230 T 230 (258)
T ss_pred C
Confidence 6
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=365.93 Aligned_cols=218 Identities=26% Similarity=0.488 Sum_probs=188.4
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCCC--C
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICSM--G 1285 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~i--~ 1285 (1467)
+..|+++|++++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 447999999999964 359999999999999999999999999999999999986 6899999999999753 4
Q ss_pred HHHHhhccEEeccCCcccccchHHhcCCC-C---------------C----CCHHHHHHHHHHcCCchHHhhCCCCcccc
Q 000481 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDPL-G---------------L----YSDDEIWKALEKCQLKTTISSLPNKLDSS 1345 (1467)
Q Consensus 1286 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~-~---------------~----~sd~ei~~aL~~~~l~~~i~~lp~gLdt~ 1345 (1467)
...+|++++|+||++.+|.+|+++|+... . . ..++++.++++.+++.+.+. +.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-------DR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh-------HH
Confidence 66788999999999999999999999521 0 0 11345777888887754432 23
Q ss_pred cccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEE-EEE
Q 000481 1346 VSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMV-MVL 1423 (1467)
Q Consensus 1346 v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrI-lVl 1423 (1467)
......+||||||||++|||||+++|+||||||||++||..+.+.+.+.|++..++.|+|+|+|+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 34556789999999999999999999999999999999999999999999988777899999999999876 9997 578
Q ss_pred eCCEEEEecChhHHhc
Q 000481 1424 SYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1424 ~~G~ivE~g~p~~Ll~ 1439 (1467)
++|++++.|+++++.+
T Consensus 274 ~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 274 TGGELVEYDDTDKIFE 289 (305)
T ss_pred cCCEEEEeCCHHHHHh
Confidence 9999999999999876
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=334.26 Aligned_cols=205 Identities=25% Similarity=0.408 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
.++++|+++.|+... ..++|+||||+|.+||.++|+|+||||||||.++|+|+.+|++|+|.++|
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 578999999997532 12599999999999999999999999999999999999999999999988
Q ss_pred eEEEEccCCcC---CCCCHHHHHhcCC-----CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 659 SIAYVSQTSWI---QSGSIRDNILYGK-----PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 659 ~i~yv~Q~~~l---~~~ti~eNi~~g~-----~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
.|-+|+|+|.- +.-||++-|.=+. +-.+++..++++..+|.+.... .+...|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~----------R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLD----------RRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHh----------cCchhcChhHHHHHHH
Confidence 38999999863 3458888776432 2234567888888888765432 4556899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||||..+|+++|||||||+||+.+...|++.+.... ..+-|.|+|||++..+.+ ||||+||++|+|+|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999987655443 246799999999999987 999999999999999999998866
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=349.86 Aligned_cols=203 Identities=24% Similarity=0.369 Sum_probs=174.5
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH---Hhhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LRVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~---LR~~ 1292 (1467)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++.+. +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 46999999999999999999999999999999999999999999999999998876544 6889
Q ss_pred cEEeccCCccc-ccchHHhcCCC---CCCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1293 LSIIPQEPTLF-RGSVRTNLDPL---GLYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1293 i~iIpQdp~LF-~gTIR~NLdp~---~~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
++|+||+|.+| ..|+++|+... ...+++ ++.++++..++.+..... ..+||+|||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-----------PIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------chhCCHHHHHHHHHH
Confidence 99999999874 67999999521 122332 456778888876654332 247999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEE
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE 1430 (1467)
||++++|++|||||||++||.++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999998753 47899999999999976 89999999999853
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=358.85 Aligned_cols=212 Identities=25% Similarity=0.394 Sum_probs=180.9
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHH-hhcc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL-RVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L-R~~i 1293 (1467)
-++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..+. |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5999999999953 469999999999999999999999999999999999999999999999999998876664 4569
Q ss_pred EEeccCCccccc-chHHhcCCCCC----------------C--C----HHHHHHHHHHcCCchHHhhCCCCcccccccCC
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDPLGL----------------Y--S----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEG 1350 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp~~~----------------~--s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G 1350 (1467)
+++||+|.+|.+ |+++|+..... . . .+.+.++++..++.+. .....
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH-----------ANRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh-----------hhCCh
Confidence 999999999986 99999863100 0 0 1234445555555432 33445
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCE
Q 000481 1351 ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGK 1427 (1467)
Q Consensus 1351 ~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ 1427 (1467)
.+||+|||||++||||++++|++|||||||++||..+.+.+.+.|++..+ ++|||+++|+++.+.+ ||+|++|++|+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 67999999999999999999999999999999999999999999987543 7899999999999976 99999999999
Q ss_pred EEEecChhHHhc
Q 000481 1428 LLEYDEPSKLME 1439 (1467)
Q Consensus 1428 ivE~g~p~~Ll~ 1439 (1467)
+++.|+++++.+
T Consensus 232 i~~~~~~~~~~~ 243 (255)
T PRK11300 232 PLANGTPEEIRN 243 (255)
T ss_pred EEecCCHHHHhh
Confidence 999999999865
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=352.15 Aligned_cols=207 Identities=25% Similarity=0.441 Sum_probs=172.3
Q ss_pred EEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH---HHHh
Q 000481 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL---KDLR 1290 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l---~~LR 1290 (1467)
|+++||+++|.... +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999995431 269999999999999999999999999999999999999999999999999988773 5778
Q ss_pred hccEEeccCC--ccc-ccchHHhcCC----CCC-CCHHHH----HHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1291 VKLSIIPQEP--TLF-RGSVRTNLDP----LGL-YSDDEI----WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1291 ~~i~iIpQdp--~LF-~gTIR~NLdp----~~~-~sd~ei----~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
++++|+||+| .++ ..|+++|+.. .+. ..+++. .++++..++.+ ........+||+|||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 9999999999 344 4699999841 111 112211 24556655531 112233457999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
||++||||++++|+||||||||++||+++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999987654 7899999999999984 9999999999998865
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=358.10 Aligned_cols=221 Identities=26% Similarity=0.436 Sum_probs=184.6
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCC-----cceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA-----GGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~-----~G~I~IDG~dI~~--i~l~ 1287 (1467)
-++++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|+ +|+|.+||.+++. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4889999999963 36999999999999999999999999999999999999874 8999999999975 3456
Q ss_pred HHhhccEEeccCCccccc-chHHhcCC-C---CCCCHHHH----HHHHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1288 DLRVKLSIIPQEPTLFRG-SVRTNLDP-L---GLYSDDEI----WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~g-TIR~NLdp-~---~~~sd~ei----~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
.+|++++|+||+|.+|.+ |+++|+.. . +...+++. .+.++..++.+.+ ++.++.+ ..+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTP----ATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCC----cccCCHHHH
Confidence 788999999999999985 99999952 1 11123333 3344555554332 2233433 457999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
||++||||++++|+||||||||++||..+.+.+.+.|++..+++|+|+++|+++.+.+ ||||++|++|++++.|+|+++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999986 899999999999999999999
Q ss_pred hc-cCChh
Q 000481 1438 ME-TNSSF 1444 (1467)
Q Consensus 1438 l~-~~~~f 1444 (1467)
++ +...+
T Consensus 235 ~~~~~~~~ 242 (252)
T PRK14272 235 FTNPRDER 242 (252)
T ss_pred HhCcCcHH
Confidence 87 33334
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=354.88 Aligned_cols=212 Identities=26% Similarity=0.429 Sum_probs=180.9
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH-Hhhcc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~-LR~~i 1293 (1467)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3899999999953 35999999999999999999999999999999999999999999999999998877644 57899
Q ss_pred EEeccCCccccc-chHHhcCCCC----CCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDPLG----LYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp~~----~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
+++||+|.+|.+ |+++|+.... ..+. +.+.+.++..++.+. .......||+|||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL-----------RDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHH-----------hhcchhhCCHHHHHHHHHH
Confidence 999999999885 9999996321 1122 234555555554332 2334467999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||++++|++|||||||++||..+.+.+.+.+++.. +++|+|+++|+++.+.+ ||+|++|++|++++.|+|+++++
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999988887653 47899999999987755 99999999999999999999876
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=365.69 Aligned_cols=207 Identities=23% Similarity=0.392 Sum_probs=173.0
Q ss_pred CCcEEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------
Q 000481 592 DRSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------- 658 (1467)
+..|+++|++|+|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 34699999999997432 24699999999999999999999999999999999999999999998764
Q ss_pred ------------------eEEEEccCC--cCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCc
Q 000481 659 ------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLT 711 (1467)
Q Consensus 659 ------------------~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t 711 (1467)
.|+||+|+| .+++.|++|||.|+.. .+.+ +..+.++.+++.. .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~ 168 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------S 168 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------h
Confidence 279999998 6888999999998742 2222 2333344443321 1
Q ss_pred cccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-cCCEEEE
Q 000481 712 EIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILV 790 (1467)
Q Consensus 712 ~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~ 790 (1467)
..++.+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|+|||+++.+. .||+|++
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 234678899999999999999999999999999999999999999988755444456899999999999875 5999999
Q ss_pred EeCCeEeEecChHHHHhc
Q 000481 791 LEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 791 l~~G~i~~~G~~~~l~~~ 808 (1467)
|++|++++.|+++++...
T Consensus 249 l~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 249 MDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EECCEEEEeCCHHHHhcC
Confidence 999999999999998754
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=360.80 Aligned_cols=224 Identities=25% Similarity=0.382 Sum_probs=186.8
Q ss_pred eEEEEEEEEEeCC-------CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH
Q 000481 1215 RIELRQLKIRYRP-------NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~-------~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~ 1287 (1467)
-|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 4899999999952 123699999999999999999999999999999999999999999999999999866666
Q ss_pred HHhhccEEeccCCc--cccc-chHHhcCC---CC-C----CCHHHHHHHHHHcCCc-hHHhhCCCCcccccccCCCCCCh
Q 000481 1288 DLRVKLSIIPQEPT--LFRG-SVRTNLDP---LG-L----YSDDEIWKALEKCQLK-TTISSLPNKLDSSVSDEGENWSA 1355 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~--LF~g-TIR~NLdp---~~-~----~sd~ei~~aL~~~~l~-~~i~~lp~gLdt~v~e~G~nLS~ 1355 (1467)
..|++++|+||+|. ++.. |+.+|+.- .. . ..++++.++++.+++. +... .. ..+||+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-------YY----PHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-------cC----chhcCH
Confidence 66778999999985 4443 77877631 11 1 1235678889999884 3322 22 247999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1356 GQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1356 GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
|||||++||||++++|+||||||||++||+++.+.+.+.|++.. .++|||+|+|+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999864 37899999999999987 9999999999999999
Q ss_pred ChhHHhcc--CChhHHHHH
Q 000481 1433 EPSKLMET--NSSFSKLVA 1449 (1467)
Q Consensus 1433 ~p~~Ll~~--~~~f~~lv~ 1449 (1467)
+++++.+. ...+++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 233 STADVLASPLHELTKRLIA 251 (267)
T ss_pred CHHHHhcCCCCHHHHHHHH
Confidence 99999873 334445544
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=366.83 Aligned_cols=212 Identities=25% Similarity=0.396 Sum_probs=182.2
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999963 3599999999999999999999999999999999999999999999999998764 356789999
Q ss_pred EeccCCcccc-cchHHhcCCCC---CCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFR-GSVRTNLDPLG---LYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~-gTIR~NLdp~~---~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
|+||+|.+|. .|+++|+..+. ..+++ .+.++++.+++.+. +++.+ .+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-------~~~~~----~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------ADVRV----ALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-------hcCch----hhCCHHHHHHHHHHHH
Confidence 9999999885 59999995211 12333 34456666665433 34443 4699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
|+++|++|||||||++||+.+.+.+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998753 47899999999999976 999999999999999999999763
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=373.61 Aligned_cols=216 Identities=24% Similarity=0.418 Sum_probs=187.3
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhcc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
..|+++|++++|.. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+++. .|+++
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999953 359999999999999999999999999999999999999999999999999988765 47789
Q ss_pred EEeccCCccccc-chHHhcCC-CC--CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDP-LG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp-~~--~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
+|++|++.+|.. |+++|+.. .. ..+ ++++.++++..++.++....|. +||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~-----------~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH-----------QLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh-----------hCCHHHHHHHHHHH
Confidence 999999999976 99999952 11 122 2456788888888766555443 68999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cC
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TN 1441 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~ 1441 (1467)
||+++|++|+||||||+||..+.+.+.+.|++.. .+.|+|+|||+++.+.. ||||+||++|++++.|+|+++.+ +.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 9999999999999999999999998888777653 37899999999999765 99999999999999999999987 44
Q ss_pred Chh
Q 000481 1442 SSF 1444 (1467)
Q Consensus 1442 ~~f 1444 (1467)
..|
T Consensus 243 ~~~ 245 (377)
T PRK11607 243 TRY 245 (377)
T ss_pred cHH
Confidence 444
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=357.45 Aligned_cols=216 Identities=23% Similarity=0.416 Sum_probs=184.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC--C---CcceEEECCeeCCC--CCHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE--P---AGGSILIDGVDICS--MGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~--~---~~G~I~IDG~dI~~--i~l~ 1287 (1467)
-|+++|++++|.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999963 469999999999999999999999999999999999975 4 59999999999964 3455
Q ss_pred HHhhccEEeccCCcccccchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1288 DLRVKLSIIPQEPTLFRGSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~LF~gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
.+|++++++||+|.+|.+|+++|+... +... ++++.++++.+++.+.+. ........+||+||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHHH
Confidence 678899999999999999999998521 1111 345667778887754332 1223345689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|++|||||||++||..+.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|++.+..
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999976 9999999999999999999987
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
.
T Consensus 236 ~ 236 (252)
T PRK14255 236 L 236 (252)
T ss_pred c
Confidence 6
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=361.83 Aligned_cols=218 Identities=26% Similarity=0.399 Sum_probs=185.6
Q ss_pred cceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-----CCcceEEECCeeCCCC--C
Q 000481 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-----PAGGSILIDGVDICSM--G 1285 (1467)
Q Consensus 1213 ~g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-----~~~G~I~IDG~dI~~i--~ 1285 (1467)
...|+++|++++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 37 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 346999999999953 359999999999999999999999999999999999865 4999999999998653 3
Q ss_pred HHHHhhccEEeccCCcccccchHHhcCCC---CCC-C----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1286 LKDLRVKLSIIPQEPTLFRGSVRTNLDPL---GLY-S----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1286 l~~LR~~i~iIpQdp~LF~gTIR~NLdp~---~~~-s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
...+|++++|+||+|.+|.+|+++|+... ... + ++++.++++..++.+.+.. .++ .....|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~----~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD---RLD----KNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh---Hhh----CChhhCCHHH
Confidence 34678999999999999999999999521 111 1 2346677888877543321 223 3456799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
|||++||||++++|++|||||||++||.++.+.+.+.|++..+++|||+++|+++.+.+ ||||++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999876 99999999999999999999
Q ss_pred Hhc
Q 000481 1437 LME 1439 (1467)
Q Consensus 1437 Ll~ 1439 (1467)
+.+
T Consensus 268 ~~~ 270 (286)
T PRK14275 268 LFT 270 (286)
T ss_pred HHh
Confidence 987
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=351.63 Aligned_cols=209 Identities=25% Similarity=0.350 Sum_probs=181.2
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
-|+++|++++|.. .++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++++.+...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999953 35999999999999999999999999999999999999999999999999999988888899999
Q ss_pred EeccCCcccccchHHhcCC----CCC-CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1295 IIPQEPTLFRGSVRTNLDP----LGL-YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1295 iIpQdp~LF~gTIR~NLdp----~~~-~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
++||+|.+|+.|+++|+.. .+. ..++++.++++..++.+.. ......+||+|||||++||||+++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTI----------LTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHH----------hcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999952 111 1234566778887774311 123345799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcccCEEEEEe-CCEEEEecChh
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVIDSDMVMVLS-YGKLLEYDEPS 1435 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~~DrIlVl~-~G~ivE~g~p~ 1435 (1467)
+|+++||||||++||..+.+.+.+.|++.. .++|+|+|+|+++.+..||+|++|+ ++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999998764 3789999999999998899999995 56667788875
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=356.05 Aligned_cols=222 Identities=23% Similarity=0.361 Sum_probs=184.0
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC----CcceEEECCeeCCCCCHHHHh
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP----AGGSILIDGVDICSMGLKDLR 1290 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~----~~G~I~IDG~dI~~i~l~~LR 1290 (1467)
.|+++|++++| + .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.+++.. +..|
T Consensus 4 ~l~~~~l~~~~--~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA--A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe--c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 59999999999 2 3599999999999999999999999999999999999999 999999999998732 2234
Q ss_pred hccEEeccCCc-ccc--cchHHhcC----CCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1291 VKLSIIPQEPT-LFR--GSVRTNLD----PLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1291 ~~i~iIpQdp~-LF~--gTIR~NLd----p~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
+.++|+||+|. .|. .|+.+|+. ..+ ...+++++++++.+++.+.. +.+......||+|||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA--------RVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChh--------hhhhcCCcccCHHHHHHHH
Confidence 67999999985 444 47776652 122 23456788999999886531 1223345679999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||||+++|+||||||||++||..+.+.+.+.|++..+ ++|||+|+|+++.+.+ ||||++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999987643 7899999999999975 99999999999999999999987
Q ss_pred -cCC-hhHHHHH
Q 000481 1440 -TNS-SFSKLVA 1449 (1467)
Q Consensus 1440 -~~~-~f~~lv~ 1449 (1467)
... .++.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (254)
T PRK10418 231 APKHAVTRSLVS 242 (254)
T ss_pred CCCCHHHHHHHH
Confidence 333 4444443
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=371.22 Aligned_cols=199 Identities=22% Similarity=0.306 Sum_probs=174.0
Q ss_pred CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCe----eCCCCCHHHHh----hccEEeccCCc
Q 000481 1230 PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV----DICSMGLKDLR----VKLSIIPQEPT 1301 (1467)
Q Consensus 1230 ~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~----dI~~i~l~~LR----~~i~iIpQdp~ 1301 (1467)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|++||. |+.+.+.+.+| ++|++|||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35899999999999999999999999999999999999999999999996 77777665543 58999999999
Q ss_pred ccc-cchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCE
Q 000481 1302 LFR-GSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373 (1467)
Q Consensus 1302 LF~-gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~I 1373 (1467)
+|+ .|+++|+... ...+ .+...++++.+++.++....| .+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 6999999521 1122 245678899999877654433 36999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1374 LVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1374 LiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
||||||||+||+.+.+.+++.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|++++.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 999999999999999999999987643 7899999999999855 99999999999999999999987
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=369.43 Aligned_cols=211 Identities=26% Similarity=0.422 Sum_probs=182.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+. ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+ ...|++|+
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999963 35999999999999999999999999999999999999999999999999998654 56889999
Q ss_pred EeccCCcccc-cchHHhcCCCC---CCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFR-GSVRTNLDPLG---LYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~-gTIR~NLdp~~---~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
|+||++.+|. .|+++|+..++ ..+.+ .+.++++.+++.+ ..+..+ .+||+|||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------~~~~~~----~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADARV----SDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------hhCCCh----hhCCHHHHHHHHHHHH
Confidence 9999999874 59999995321 12222 3445666666543 344444 3699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|+.+|++|||||||++||+.+.+.+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++.+
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999998764 47999999999999976 99999999999999999999976
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=365.08 Aligned_cols=210 Identities=22% Similarity=0.361 Sum_probs=185.9
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|.. ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+ ....+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999953 459999999999999999999999999999999999999999999999999987 44678999999
Q ss_pred eccCCccccc-chHHhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++||..+. ..+ ++++.++++..++.+... ....+||+|||||++||||+
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH-----------KKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CchhhCCHHHHHHHHHHHHH
Confidence 9999999987 9999995211 122 345677778877765432 22357999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+++|++|+|||||++||+.+.+.+.+.|++..+++|||+++|+++.+.+ ||||++|++|++++.|+++++.+
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999987778999999999999987 99999999999999999999876
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=349.94 Aligned_cols=208 Identities=25% Similarity=0.406 Sum_probs=183.2
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++||+++|+. . ..|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++|
T Consensus 2 l~~~~l~~~~~~-~---~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH-L---PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC-c---cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 789999999963 2 249999999999999999999999999999999999999999999999987654 3678999
Q ss_pred eccCCccccc-chHHhcCC-CCC------CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDP-LGL------YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp-~~~------~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++|+.. +.. ..++++.++++.+++.+.+...|. .||+|||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG-----------QLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcc-----------cCCHHHHHHHHHHHHH
Confidence 9999999986 99999962 211 124568889999999877665553 5899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
+++|++|||||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999987643 7899999999999876 899999999999999999999864
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=349.90 Aligned_cols=200 Identities=27% Similarity=0.448 Sum_probs=171.9
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCC--CCHHHHhhcc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICS--MGLKDLRVKL 1293 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~--i~l~~LR~~i 1293 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 578999999954 459999999999999999999999999999999999999999999999999853 4556788999
Q ss_pred EEeccCCcccc-cchHHhcCCC----CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHH
Q 000481 1294 SIIPQEPTLFR-GSVRTNLDPL----GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1294 ~iIpQdp~LF~-gTIR~NLdp~----~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LA 1364 (1467)
+|+||+|.+|. .|+++|+... ...+ ++++.++++..++.+..... ..+||+|||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAY-----------PAQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC-----------ccccCHHHHHHHHHH
Confidence 99999999987 5999999532 1222 23456677777775544332 247999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEE
Q 000481 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKL 1428 (1467)
Q Consensus 1365 RAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~i 1428 (1467)
||++++|++|||||||++||+++.+.+.+.|++.. .++|+|+++|+++.+.+ ||+|++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999764 47899999999999976 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=355.05 Aligned_cols=222 Identities=24% Similarity=0.422 Sum_probs=187.6
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEEC------CeeCCCCCHHH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILID------GVDICSMGLKD 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~ID------G~dI~~i~l~~ 1288 (1467)
.|+++|++++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+| |.++.+++...
T Consensus 10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 5999999999953 459999999999999999999999999999999999999998666655 47777778888
Q ss_pred HhhccEEeccCCccccc-chHHhcCCC----CCCCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHH
Q 000481 1289 LRVKLSIIPQEPTLFRG-SVRTNLDPL----GLYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359 (1467)
Q Consensus 1289 LR~~i~iIpQdp~LF~g-TIR~NLdp~----~~~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQ 1359 (1467)
+|++++|+||+|.+|.+ |+++|+... +...++ .+.++++..++.+.+.. .....+..||+||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-------RLNSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-------hhcCCcccCCHHHHH
Confidence 99999999999999976 999999621 111222 35677788887654311 122345679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1360 rl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
|++||||++++|++|+|||||++||..+.+.+.+.|++..+++|+|+++|+++.+.. ||++++|++|++++.|+++++.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999987678999999999999954 9999999999999999999998
Q ss_pred c-cCChhH
Q 000481 1439 E-TNSSFS 1445 (1467)
Q Consensus 1439 ~-~~~~f~ 1445 (1467)
+ +...+.
T Consensus 241 ~~~~~~~~ 248 (257)
T PRK14246 241 TSPKNELT 248 (257)
T ss_pred hCCCcHHH
Confidence 7 343343
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=347.63 Aligned_cols=201 Identities=25% Similarity=0.439 Sum_probs=176.6
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|+. +++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+.+ .+|+++++
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999952 578999999999999999999999999999999999999999999999997644 46889999
Q ss_pred eccCCccccc-chHHhcC-CCC---C---CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLD-PLG---L---YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLd-p~~---~---~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++|+. ++. . ..++++.++++..++.+.....|. +||+|||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc-----------cCCHHHHHHHHHHHHH
Confidence 9999999975 9999985 221 1 124567889999998776655543 6899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecC
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDE 1433 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~ 1433 (1467)
+++|+|++|||||++||.++.+.+.+.|++.. .++|+|+|+|+++.+.+ ||+|++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999998764 37899999999999876 99999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=345.78 Aligned_cols=205 Identities=39% Similarity=0.607 Sum_probs=183.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|+++.|+.. ..++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 48899999999642 25699999999999999999999999999999999999999999999877 38
Q ss_pred EEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000481 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1467)
Q Consensus 661 ~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~ 739 (1467)
+|++|+++++..|++||+.++.. .+++++.+.++.+++.+.++.+|.|.+|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999888899999998754 34566778888899998899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEec
Q 000481 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1467)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G 800 (1467)
++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~-~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQ-LLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHH-hcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999998765444 33458999999999988779999999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=357.07 Aligned_cols=211 Identities=22% Similarity=0.363 Sum_probs=184.9
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++..+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 789999999953 359999999999999999999999999999999999999999999999999999888888889999
Q ss_pred eccCCc-ccccchHHhcCCCC----C-------CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHH
Q 000481 1296 IPQEPT-LFRGSVRTNLDPLG----L-------YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCL 1363 (1467)
Q Consensus 1296 IpQdp~-LF~gTIR~NLdp~~----~-------~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~L 1363 (1467)
+||+|. .+..|+++|+.... . ..++++.++++.+++.+.... ....||+|||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHH
Confidence 999995 45679999995311 0 113357788888888654332 234699999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhc-ccCEEEEEeCCEEEEecChhHHhc
Q 000481 1364 GRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVI-DSDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1364 ARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~-~~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|||++.+|+++||||||++||..+.+.+.+.|++.. ++.|+|+++|+++.+. -||+|++|++|++++.|+++++.+
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999998764 3789999999999995 499999999999999999999865
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=366.52 Aligned_cols=224 Identities=21% Similarity=0.366 Sum_probs=185.6
Q ss_pred eEEEEEEEEEeCC--CCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC----CCcceEEECCeeCCCCCHHH
Q 000481 1215 RIELRQLKIRYRP--NAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE----PAGGSILIDGVDICSMGLKD 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~--~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~----~~~G~I~IDG~dI~~i~l~~ 1288 (1467)
-++++|++++|.. +...+|+||||+|++||.+||||+||||||||+++|.|+.+ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3899999999953 22459999999999999999999999999999999999986 58999999999999988776
Q ss_pred Hh----hccEEeccCCcc--cc-cchHHhcC-C---C---CC------CCHHHHHHHHHHcCCchHHhhCCCCccccccc
Q 000481 1289 LR----VKLSIIPQEPTL--FR-GSVRTNLD-P---L---GL------YSDDEIWKALEKCQLKTTISSLPNKLDSSVSD 1348 (1467)
Q Consensus 1289 LR----~~i~iIpQdp~L--F~-gTIR~NLd-p---~---~~------~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e 1348 (1467)
++ ++|++|||||.. +. .|+.+|+. + . +. ..++++.++|+++++.+.... ++ .
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~----~~----~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA----MR----S 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH----Hh----C
Confidence 54 479999999973 33 48888873 1 1 10 013467889999998753211 11 1
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeC
Q 000481 1349 EGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSY 1425 (1467)
Q Consensus 1349 ~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~ 1425 (1467)
....||||||||++|||||+.+|+|||+||||++||..+.+.|.+.|++..+ +.|+|+|||+++.+.. ||||+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 2247999999999999999999999999999999999999999999997543 7899999999999976 999999999
Q ss_pred CEEEEecChhHHhc-cCChhHH
Q 000481 1426 GKLLEYDEPSKLME-TNSSFSK 1446 (1467)
Q Consensus 1426 G~ivE~g~p~~Ll~-~~~~f~~ 1446 (1467)
|+|+|.|+++++++ +...|.+
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHH
Confidence 99999999999987 4445544
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=352.00 Aligned_cols=200 Identities=27% Similarity=0.392 Sum_probs=168.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 4699999999999999999999999999999999999999999998865
Q ss_pred eEEEEccCCcCCCC-CHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 659 SIAYVSQTSWIQSG-SIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~~-ti~eNi~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
.|+|++|++.+++. |++||+.++.. .+. ++..++++.+++.+.. .....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 28999999988775 99999988632 222 2344455555554322 2455689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999998765544444 38999999999998875 99999999999999999988764
Q ss_pred c
Q 000481 808 A 808 (1467)
Q Consensus 808 ~ 808 (1467)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 3
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=348.49 Aligned_cols=200 Identities=26% Similarity=0.410 Sum_probs=172.2
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 578999999953 459999999999999999999999999999999999999999999999998863 56789999
Q ss_pred eccCCccccc-chHHhcCCCC---CC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDPLG---LY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp~~---~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|.+ |+++|+.... .. .++++.++++..++.+.... ...+||+|||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANK-----------RVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhC-----------cHhhCCHHHHHHHHHHHHH
Confidence 9999999986 9999984211 11 13456677777776554332 3357999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|+|+++.+.+ ||+|++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998754 47899999999999876 9999999999999865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=354.60 Aligned_cols=219 Identities=22% Similarity=0.393 Sum_probs=180.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCee-----CCCCCHHH-
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVD-----ICSMGLKD- 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~d-----I~~i~l~~- 1288 (1467)
-++++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5999999999953 359999999999999999999999999999999999999999999999999 88776655
Q ss_pred ---HhhccEEeccCCc--ccc-cchHHhcC----CCCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCC
Q 000481 1289 ---LRVKLSIIPQEPT--LFR-GSVRTNLD----PLGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWS 1354 (1467)
Q Consensus 1289 ---LR~~i~iIpQdp~--LF~-gTIR~NLd----p~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS 1354 (1467)
.|+.++|+||+|. ++. .|+++|+. .++... ++++.++++..++.+ +.....+.+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 153 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFS 153 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccCC
Confidence 3567999999984 333 47777763 122111 233445555555431 12334557899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEe
Q 000481 1355 AGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1355 ~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~ 1431 (1467)
||||||++||||++++|+||||||||++||.++.+.+.+.|++..+ +.|+|+|+|+++.+.+ ||+|++|++|++++.
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999987543 7899999999999975 999999999999999
Q ss_pred cChhHHhc-cCChhH
Q 000481 1432 DEPSKLME-TNSSFS 1445 (1467)
Q Consensus 1432 g~p~~Ll~-~~~~f~ 1445 (1467)
|+|+++.+ +...|.
T Consensus 234 ~~~~~~~~~~~~~~~ 248 (258)
T PRK11701 234 GLTDQVLDDPQHPYT 248 (258)
T ss_pred CCHHHHhcCCCCHHH
Confidence 99999986 333343
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=356.17 Aligned_cols=211 Identities=22% Similarity=0.347 Sum_probs=184.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCC--------cceEEECCeeCCCCCHH
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA--------GGSILIDGVDICSMGLK 1287 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~--------~G~I~IDG~dI~~i~l~ 1287 (1467)
|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 789999999953 35999999999999999999999999999999999999998 99999999999988888
Q ss_pred HHhhccEEeccCCc-ccccchHHhcCCCC--------CC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCCh
Q 000481 1288 DLRVKLSIIPQEPT-LFRGSVRTNLDPLG--------LY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSA 1355 (1467)
Q Consensus 1288 ~LR~~i~iIpQdp~-LF~gTIR~NLdp~~--------~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~ 1355 (1467)
.+|+.++++||++. +|..|+++|+.... .. .++.++++++..++.+.. ......|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV-----------GRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 88899999999986 57889999985311 11 123567788888775432 233457999
Q ss_pred hHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEE
Q 000481 1356 GQRQLFCLGRVLL---------KRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVL 1423 (1467)
Q Consensus 1356 GQrQrl~LARAlL---------r~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl 1423 (1467)
|||||++||||++ .+|++|||||||++||..+.+.+.+.|++..+ ++|+|+|+|+++.+.+ ||+|++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999997643 6899999999999964 9999999
Q ss_pred eCCEEEEecChhHHhc
Q 000481 1424 SYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1424 ~~G~ivE~g~p~~Ll~ 1439 (1467)
++|++++.|+++++++
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999999876
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=366.01 Aligned_cols=202 Identities=27% Similarity=0.349 Sum_probs=173.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~y 662 (1467)
.|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .|+|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 6899999999963 4689999999999999999999999999999999999999999999987 4999
Q ss_pred EccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
|+|++.+|. .|++|||.|+.. .+ +++.+++++..++....+ ....+|||||||||+|||||
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~-----------r~~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-----------RYVDQISGGQQQRVALARAL 151 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHH
Confidence 999999885 599999999743 22 234555666666644332 45678999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcC
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
+.+|+++|||||||+||+.+.+.+.+.+..... .|+|+|+|||+.+.+.. ||+|++|++|+|++.|+++++....
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999998765544433 38999999999998755 8999999999999999999987653
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=354.40 Aligned_cols=210 Identities=21% Similarity=0.309 Sum_probs=180.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCC---cceEEECCeeCCCC-----CH
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA---GGSILIDGVDICSM-----GL 1286 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~---~G~I~IDG~dI~~i-----~l 1286 (1467)
-++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999953 45999999999999999999999999999999999999886 49999999998754 24
Q ss_pred HHHhhccEEeccCCccccc-chHHhcCCC---------------CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCC
Q 000481 1287 KDLRVKLSIIPQEPTLFRG-SVRTNLDPL---------------GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEG 1350 (1467)
Q Consensus 1287 ~~LR~~i~iIpQdp~LF~g-TIR~NLdp~---------------~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G 1350 (1467)
..+|++++|+||++.+|.+ |+++|+... ....++++.++++..++.+.... ..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence 5678899999999998875 999998521 00113457778888887654332 23
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCE
Q 000481 1351 ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGK 1427 (1467)
Q Consensus 1351 ~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ 1427 (1467)
.+||+|||||++||||++.+|++|||||||++||.++.+.+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 4699999999999999999999999999999999999999999999864 37899999999998755 99999999999
Q ss_pred EEEecChhHH
Q 000481 1428 LLEYDEPSKL 1437 (1467)
Q Consensus 1428 ivE~g~p~~L 1437 (1467)
+++.|+|+++
T Consensus 231 i~~~g~~~~~ 240 (262)
T PRK09984 231 VFYDGSSQQF 240 (262)
T ss_pred EEEeCCHHHh
Confidence 9999999996
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=359.47 Aligned_cols=212 Identities=28% Similarity=0.486 Sum_probs=188.5
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++.+|.. ...+|+||||+|++||.+|++||||||||||+++|.|+++|++|+|.++|.|...- ....|+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4789999999963 24599999999999999999999999999999999999999999999999998765 678899999
Q ss_pred EeccCCccccc-chHHhcCCCC-------CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHH
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPLG-------LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~~-------~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARA 1366 (1467)
|+||+|.+++. |++|||+.+. ...++.+.+.++..+|.+.- +.. ...||+|||||+.||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~----~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKK----VRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccc----hhhcCHHHHHHHHHHHH
Confidence 99999998876 9999996432 12356788999999987622 222 24699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-cEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEFS-N-CTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1367 lLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~-~-~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
|+.+|++|||||||++||+.+...+.+.|++..+ + +||++.+|.++.+.. ||||++|++|+++.+|+++++.+
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999998765 4 799999999999988 99999999999999999999875
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=356.67 Aligned_cols=204 Identities=25% Similarity=0.379 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999643234699999999999999999999999999999999999999999999877 38
Q ss_pred EEEccCCc--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 661 ~yv~Q~~~--l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+||+|+|. ++..||+|||.|+.. .+. ++..++++.+++....+ ....+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999984 567799999998742 222 34566777777765444 34568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999988765544444 38999999999999878999999999999999999887654
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=357.77 Aligned_cols=204 Identities=22% Similarity=0.399 Sum_probs=172.0
Q ss_pred EEEEeEEEEeCCCCC--CCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 595 VKIQEGNFSWDPELA--IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~--~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
|+++|++|+|+.+.. +++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974321 3699999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 ---~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.++||+|+| .+++.|+.||+.|+.. ... +++.++++..++.+++. .+...+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW----------EKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc----------cCCcccCCHHHHH
Confidence 279999998 6888899999998742 222 34555566666543221 2556799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
|++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999876544333458999999999998864 999999999999999999998
Q ss_pred Hhc
Q 000481 806 LLA 808 (1467)
Q Consensus 806 ~~~ 808 (1467)
...
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 653
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=352.20 Aligned_cols=213 Identities=22% Similarity=0.299 Sum_probs=178.4
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhccc--CCCcceEEECCeeCCCCCHHHH-hhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV--EPAGGSILIDGVDICSMGLKDL-RVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~--~~~~G~I~IDG~dI~~i~l~~L-R~~ 1292 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999953 35999999999999999999999999999999999994 7999999999999998877664 456
Q ss_pred cEEeccCCccccc-chHHhcCCC----CC------CC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1293 LSIIPQEPTLFRG-SVRTNLDPL----GL------YS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1293 i~iIpQdp~LF~g-TIR~NLdp~----~~------~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
++++||+|.+|.+ |+++|+... .. .+ ++++.++++..++.+.. ++..+. ..||+||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G~ 149 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGGE 149 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHHH
Confidence 9999999999987 899987411 10 11 23466777777765321 122221 2499999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc--cCEEEEEeCCEEEEecCh
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID--SDMVMVLSYGKLLEYDEP 1434 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~--~DrIlVl~~G~ivE~g~p 1434 (1467)
|||++||||++++|++|||||||++||..+.+.+.+.|++.. +++|||+|+|+++.+.. ||+|++|++|++++.|++
T Consensus 150 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 150 KKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 999999999999999999999999999999999999998764 47899999999999976 799999999999999999
Q ss_pred hHHhc
Q 000481 1435 SKLME 1439 (1467)
Q Consensus 1435 ~~Ll~ 1439 (1467)
++.-.
T Consensus 230 ~~~~~ 234 (243)
T TIGR01978 230 ELAKE 234 (243)
T ss_pred HHhcc
Confidence 86543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=357.69 Aligned_cols=204 Identities=23% Similarity=0.375 Sum_probs=172.6
Q ss_pred EEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
++++|++|+|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 14699999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 ---SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 ---~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.|+||+|+| .+++.|++|||.|+.. .+. ++++++++.++|..++. ..+..+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 289999997 5778899999998732 222 34556666776653332 2456789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
|++||||++.+|+++||||||++||+.+.+.+.+.+..... .|.|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999998765544433 38999999999999865 99999999999999999998
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8654
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=362.51 Aligned_cols=199 Identities=24% Similarity=0.414 Sum_probs=174.3
Q ss_pred CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCccccc-chH
Q 000481 1230 PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVR 1308 (1467)
Q Consensus 1230 ~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~g-TIR 1308 (1467)
.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|++++++||++.+|.+ |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 359999999999999999999999999999999999999999999999999976 345778999999999999986 999
Q ss_pred HhcCCCC---CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q 000481 1309 TNLDPLG---LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381 (1467)
Q Consensus 1309 ~NLdp~~---~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs 1381 (1467)
+|+.... ..+ ++++.++++.+++.+.. +..+ .+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-------DRPV----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------CCch----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9995321 112 34577788888876543 2222 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhcc
Q 000481 1382 SIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1382 ~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
+||+.+.+.+.+.|++.. +++|||+++|+++.+.+ ||+|++|++|++++.|+++++.++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999998764 47899999999999976 999999999999999999999763
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=366.77 Aligned_cols=189 Identities=26% Similarity=0.361 Sum_probs=163.6
Q ss_pred CCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------------eEEEEccCCcCCC-
Q 000481 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQS- 671 (1467)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------------~i~yv~Q~~~l~~- 671 (1467)
+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++||+|++++++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 5689999999999999999999999999999999999999999999876 4999999999987
Q ss_pred CCHHHHHhcCCCC---CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEe
Q 000481 672 GSIRDNILYGKPM---DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744 (1467)
Q Consensus 672 ~ti~eNi~~g~~~---~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLD 744 (1467)
.||+|||.|+.++ +. ++..++++.++|.... ++.+.+|||||||||+|||||+.+|+|+|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~-----------~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE-----------HRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5999999987432 22 3344555555554433 3566799999999999999999999999999
Q ss_pred CCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcC
Q 000481 745 DPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 745 ep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
||||+||+.+.+.+.+.+..... .++|+|+|||+++++.. ||+|++|++|++++.|++++++...
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 99999999999999887765543 48999999999998654 9999999999999999999998653
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=365.45 Aligned_cols=202 Identities=30% Similarity=0.390 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~y 662 (1467)
.++++|++++|+. ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4899999999963 4689999999999999999999999999999999999999999999987 3999
Q ss_pred EccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
|+|++.+|. .|++|||.|+.. .+ .++.+++++..++.+..+ .++.+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 999998885 699999999743 22 234555666666554333 46679999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcC
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
+.+|+++|||||||+||+.+.+++.+.+.+... .|.|+|+|||+.+++.. ||+|++|++|++++.|+++++.+..
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999998776554433 38999999999998765 9999999999999999999998754
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=365.82 Aligned_cols=208 Identities=25% Similarity=0.388 Sum_probs=182.4
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCC----CHHHHhh
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM----GLKDLRV 1291 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i----~l~~LR~ 1291 (1467)
|++ |++++|.. . .+ |+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+. .....|+
T Consensus 2 l~~-~l~k~~~~--~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGD--L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCC--E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 89999953 2 23 99999999999999999999999999999999999999999999998753 2445688
Q ss_pred ccEEeccCCcccc-cchHHhcCC-CCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1292 KLSIIPQEPTLFR-GSVRTNLDP-LGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~-gTIR~NLdp-~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
+++|+||++.+|. .|+++|+.. .....++++.++++..++.+.....| .+||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHHc
Confidence 9999999999997 599999962 22234567888999998876655443 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+|++|+|||||++||..+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999999999999999999999987653 6899999999998876 99999999999999999999987
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=356.60 Aligned_cols=206 Identities=26% Similarity=0.405 Sum_probs=171.9
Q ss_pred cEEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999996432 14699999999999999999999999999999999999999999998866
Q ss_pred --eEEEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 659 --SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 659 --~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
.|+||||+| .+++.|++|||.|+.. .+. +++.++++.+++.. .+....++.+||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHH
Confidence 389999998 5678899999998642 232 23455666666541 011235678999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHH
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l 805 (1467)
++|||||+.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+.+++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999998765544433 3899999999999986 5999999999999999999988
Q ss_pred Hhc
Q 000481 806 LLA 808 (1467)
Q Consensus 806 ~~~ 808 (1467)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13637 233 FKE 235 (287)
T ss_pred HhC
Confidence 653
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=364.73 Aligned_cols=203 Identities=28% Similarity=0.365 Sum_probs=174.9
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEE
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~ 661 (1467)
..++++|++++|+. .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .++
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 45899999999963 4689999999999999999999999999999999999999999999987 399
Q ss_pred EEccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 662 YVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 662 yv~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
||+|++.+|. .||+|||.|+.. .. +++.+++++..++.+.++. +..+|||||||||+||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~p~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQR-----------KPHQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999998875 599999999753 22 2345566777777655543 446899999999999999
Q ss_pred HhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHhcC
Q 000481 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
|+.+|+++|||||||+||++..+.+.+.+..... .|.|+|+|||+.+.+. .||+|++|++|+|++.|+++++....
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999998766554433 3899999999999865 59999999999999999999987654
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=346.55 Aligned_cols=199 Identities=30% Similarity=0.406 Sum_probs=168.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~yv 663 (1467)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 789999999963 4699999999999999999999999999999999999999999998876 38999
Q ss_pred ccCCcCCC-CCHHHHHhcCCCC-------CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 664 SQTSWIQS-GSIRDNILYGKPM-------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 664 ~Q~~~l~~-~ti~eNi~~g~~~-------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+|+|.++. .|++||+.++... +. ++.++.++.+++.+.. .....+||||||||++||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 148 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVALA 148 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHHHH
Confidence 99998875 6999999986321 21 2334455555554322 245678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
||++.+|+++||||||++||+++.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 999999999999999999999999998765544433 37899999999998765 89999999999999999988764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=343.07 Aligned_cols=204 Identities=25% Similarity=0.372 Sum_probs=178.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.... ++++++
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 578999999963 45999999999999999999999999999999999999999999999999876422 357999
Q ss_pred eccCCcccc-cchHHhcCC---CCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1296 IPQEPTLFR-GSVRTNLDP---LGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1296 IpQdp~LF~-gTIR~NLdp---~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
+||++.+|. .|+++|+.. ....+++++.++++..++.+..... ..+||+|||||++||||++++|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999999886 599999852 1123567888999999887654332 2469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhH
Q 000481 1372 RILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSK 1436 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~ 1436 (1467)
++|+|||||++||.++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999998754 47899999999999865 99999999999999999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=329.99 Aligned_cols=171 Identities=41% Similarity=0.725 Sum_probs=161.6
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|....+.+++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 57899999996543469999999999999999999999999999999999999999999999999998888888999999
Q ss_pred eccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000481 1296 IPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILV 1375 (1467)
Q Consensus 1296 IpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILi 1375 (1467)
+||+|.+|++|+++|+ ||+|||||++||||++++|++|+
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 89999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCE
Q 000481 1376 LDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGK 1427 (1467)
Q Consensus 1376 LDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ 1427 (1467)
|||||++||..+...+.+.|++..+++|+|+++|+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998767899999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=364.01 Aligned_cols=203 Identities=28% Similarity=0.419 Sum_probs=174.7
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCC--cEEEEcC-----------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS--GTVNLYG-----------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~--G~i~~~g-----------~ 659 (1467)
+.++++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++ |+|.++| .
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 46899999999963 469999999999999999999999999999999999999999 9999877 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
|+||+|++.+|. .||+|||.|+.. ... ++++++++..++.+..+ .+..+|||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA-----------HLPAQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhh-----------CChhhCCHHHHHHHHHH
Confidence 999999998885 599999998742 222 34555666666654443 45568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC--CcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~--~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|||+.+|+++|||||||+||+...+.+.+.+.+...+ |.|+|+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999987766544444 7899999999998765 999999999999999999999865
Q ss_pred C
Q 000481 809 G 809 (1467)
Q Consensus 809 ~ 809 (1467)
.
T Consensus 230 p 230 (362)
T TIGR03258 230 P 230 (362)
T ss_pred c
Confidence 4
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=390.41 Aligned_cols=107 Identities=19% Similarity=0.312 Sum_probs=93.2
Q ss_pred Cccc-ccccCCCCCChhHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhc
Q 000481 1341 KLDS-SVSDEGENWSAGQRQLFCLGRVLLKRN---RILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVI 1415 (1467)
Q Consensus 1341 gLdt-~v~e~G~nLS~GQrQrl~LARAlLr~~---~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~ 1415 (1467)
||+. ..+.....||||||||+.|||+|+++| +++||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4543 356677889999999999999999999 9999999999999999999999998764 5789999999999999
Q ss_pred ccCEEEEE------eCCEEEEecChhHHhc-cCChhHHH
Q 000481 1416 DSDMVMVL------SYGKLLEYDEPSKLME-TNSSFSKL 1447 (1467)
Q Consensus 1416 ~~DrIlVl------~~G~ivE~g~p~~Ll~-~~~~f~~l 1447 (1467)
.||+|++| ++|+|++.|+|+++.+ +.+.-.+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~ 936 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRY 936 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHH
Confidence 99999999 6999999999999997 44443333
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=350.65 Aligned_cols=222 Identities=23% Similarity=0.372 Sum_probs=184.5
Q ss_pred eEEEEEEEEEeCCC-------CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH
Q 000481 1215 RIELRQLKIRYRPN-------APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK 1287 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~-------~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~ 1287 (1467)
-|+++||+++|+.+ ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++..++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999631 35699999999999999999999999999999999999999999999999999887653
Q ss_pred ---HHhhccEEeccCCc--cc-ccchHHhcC-CC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCC
Q 000481 1288 ---DLRVKLSIIPQEPT--LF-RGSVRTNLD-PL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENW 1353 (1467)
Q Consensus 1288 ---~LR~~i~iIpQdp~--LF-~gTIR~NLd-p~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nL 1353 (1467)
.+|++++++||+|. ++ ..|+++|+. +. ...+ ++.+.++++..++... ........|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCccC
Confidence 47889999999984 43 368999973 11 1111 1235556666555321 123345679
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEE
Q 000481 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430 (1467)
Q Consensus 1354 S~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE 1430 (1467)
|+|||||++||||++++|+||||||||++||.++.+.+.+.|++..+ ++|+|+|+|+++.+.. ||+|++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999987643 7899999999999986 99999999999999
Q ss_pred ecChhHHhccCChhHH
Q 000481 1431 YDEPSKLMETNSSFSK 1446 (1467)
Q Consensus 1431 ~g~p~~Ll~~~~~f~~ 1446 (1467)
.|+++++.+.++.|..
T Consensus 233 ~g~~~~~~~~~~~~~~ 248 (268)
T PRK10419 233 TQPVGDKLTFSSPAGR 248 (268)
T ss_pred eCChhhccCCCCHHHH
Confidence 9999999876665543
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=361.69 Aligned_cols=202 Identities=32% Similarity=0.444 Sum_probs=172.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~y 662 (1467)
.++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 3789999999963 4699999999999999999999999999999999999999999999877 4999
Q ss_pred EccCCcCCC-CCHHHHHhcCCCC-------C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 663 VSQTSWIQS-GSIRDNILYGKPM-------D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 663 v~Q~~~l~~-~ti~eNi~~g~~~-------~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
|+|++.++. .|++|||.|+... + +++..+.++..++.+..+ .+..+|||||||||+|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----------RYPAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHHH
Confidence 999998886 5999999997431 2 134455566666543332 4567999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||||+.+|+++|||||||+||+++.+.+.+.+.....+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999987655544433 7899999999998765 899999999999999999999765
Q ss_pred C
Q 000481 809 G 809 (1467)
Q Consensus 809 ~ 809 (1467)
.
T Consensus 228 p 228 (353)
T PRK10851 228 P 228 (353)
T ss_pred c
Confidence 3
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=354.80 Aligned_cols=205 Identities=21% Similarity=0.406 Sum_probs=170.2
Q ss_pred cEEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
.++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996432 24699999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEccCC--cCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 ----~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.||||+|+| .+++.|++|||.|+.. .+.+ +..++++.+++..+. ....+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV----------MSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHH
Confidence 379999997 5777899999998732 2332 333444444443211 2256779999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~ 803 (1467)
||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999998765444333 4899999999999986 48999999999999999998
Q ss_pred HHHhc
Q 000481 804 ELLLA 808 (1467)
Q Consensus 804 ~l~~~ 808 (1467)
++...
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 88654
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=355.43 Aligned_cols=204 Identities=25% Similarity=0.410 Sum_probs=171.1
Q ss_pred EEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 595 VKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999996432 13699999999999999999999999999999999999999999998753
Q ss_pred -----------------------eEEEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCC
Q 000481 659 -----------------------SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFD 706 (1467)
Q Consensus 659 -----------------------~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~ 706 (1467)
.|+||+|+| .++..||+|||.|+.. .+. ++..++++.++|..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---- 158 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY---- 158 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 279999986 5678899999998742 232 3445566666664222
Q ss_pred CCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-cC
Q 000481 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EV 785 (1467)
Q Consensus 707 ~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~ 785 (1467)
......+||||||||++||||++.+|+++||||||++||+...+.+.+.+.....+|+|+|+|||+++.+. .|
T Consensus 159 ------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 159 ------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 12566799999999999999999999999999999999999999887655444446899999999999875 49
Q ss_pred CEEEEEeCCeEeEecChHHHHhc
Q 000481 786 DRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 786 d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|+|++|++|++++.|+.+++...
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999988654
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=344.53 Aligned_cols=202 Identities=27% Similarity=0.376 Sum_probs=175.6
Q ss_pred EEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH---HHh
Q 000481 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK---DLR 1290 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~---~LR 1290 (1467)
++++|++++|+++. ..+|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.++..++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996432 4699999999999999999999999999999999999999999999999999877643 468
Q ss_pred hccEEeccCCcccc-cchHHhcCCCC----CCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1291 VKLSIIPQEPTLFR-GSVRTNLDPLG----LYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~-gTIR~NLdp~~----~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
+.++++||+|.+|. .|+.+|+.... ..+. +.+.++++++++.+.....| .+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999997 69999995321 1222 34677788888776655544 36999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcccCEEEEEeCCEE
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKL 1428 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~~DrIlVl~~G~i 1428 (1467)
+||||++++|++|+|||||++||.++.+.+.+.|++..+ ++|+|+|+|+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999987653 7999999999997767999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=325.85 Aligned_cols=214 Identities=24% Similarity=0.449 Sum_probs=183.6
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH-HhhccE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LRVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~-LR~~i~ 1294 (1467)
++++|++..|.+ -.+|+||||++++||.|+++||||+|||||+++|+|+.++.+|+|.++|.||+..+.|+ .|..|+
T Consensus 4 L~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 4 LEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred eeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 789999999964 45999999999999999999999999999999999999999999999999999999887 588999
Q ss_pred EeccCCccccc-chHHhcCCCCC-CCH-----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1295 IIPQEPTLFRG-SVRTNLDPLGL-YSD-----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLdp~~~-~sd-----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+|||...+|.. ||+|||..... ..+ ..+.++.+. .|. |.......+.+|||||+|-++|||||
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~l---------FP~-Lker~~~~aG~LSGGEQQMLAiaRAL 151 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYEL---------FPR-LKERRNQRAGTLSGGEQQMLAIARAL 151 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHH---------Chh-HHHHhcCcccCCChHHHHHHHHHHHH
Confidence 99999999976 99999953211 111 112223222 232 34445566789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhccC
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMETN 1441 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~~ 1441 (1467)
+.+||+|+|||||.+|-+.--+.|.++|++..+ +-||+.|-++.....+ +||.+||++|+|+..|++++|++..
T Consensus 152 m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 152 MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred hcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 999999999999999999999999999998764 5699999999998875 9999999999999999999999843
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=346.43 Aligned_cols=199 Identities=22% Similarity=0.355 Sum_probs=166.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------eE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i 660 (1467)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 4699999999999999999999999999999999999999999998876 28
Q ss_pred EEEccCCcCCCC-CHHHHHhcCCCC-------------CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccCh
Q 000481 661 AYVSQTSWIQSG-SIRDNILYGKPM-------------DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1467)
Q Consensus 661 ~yv~Q~~~l~~~-ti~eNi~~g~~~-------------~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 722 (1467)
+|+||++.++.. |++||+.++... +. ++..+.++..++. ...+.+..+|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-----------DLADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-----------chhhCChhhCCH
Confidence 999999988765 999999886321 01 1223333333332 223466789999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecC
Q 000481 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1467)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~ 801 (1467)
|||||++||||++.+|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999887655444478999999999999876 89999999999999999
Q ss_pred hHHHHh
Q 000481 802 YQELLL 807 (1467)
Q Consensus 802 ~~~l~~ 807 (1467)
++++..
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 888753
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=339.46 Aligned_cols=198 Identities=42% Similarity=0.792 Sum_probs=178.4
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------------
Q 000481 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658 (1467)
Q Consensus 596 ~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------------- 658 (1467)
.+.|++|+|+.+ .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999754 4699999999999999999999999999999999999999999998854
Q ss_pred eEEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCC
Q 000481 659 SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~ 738 (1467)
.++|++|++.+++.|++||+.++.+.+.++.+++++.+++.+.++.+|.|++|.++.+..+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 38999999999999999999998766666778889999999889889999999999999999999999999999999999
Q ss_pred CEEEEeCCCCccCHHHHHHHHHH-HHHHh-cCCcEEEEEccCcchhhcCCEEEEEeCCe
Q 000481 739 DIYLFDDPFSAVDAHTAATLFNE-CVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1467)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~-~~~~~-~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1467)
+++||||||++||+.+.+.+.+. ++... .+++|+|++||+.+.+..||++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988763 44443 34789999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=351.59 Aligned_cols=199 Identities=28% Similarity=0.446 Sum_probs=171.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 4699999999999999999999999999999999999999999999877 38
Q ss_pred EEEccCC--cCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 661 AYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 661 ~yv~Q~~--~l~~~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+|++|+| .++..|++||+.|+.. .+ ++++.++++.+++.+..+. ...+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDK-----------PPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999998 5778899999998732 22 2355667777777654443 3458999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHH
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l 805 (1467)
||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+. .||+|++|++|++++.|+.+++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999987655544445899999999999985 5999999999999999998654
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=343.71 Aligned_cols=197 Identities=31% Similarity=0.442 Sum_probs=165.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCC-----CCCCcEEEEcC-----------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI-----PKISGTVNLYG----------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~-----~~~~G~i~~~g----------- 658 (1467)
|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 478999999963 46999999999999999999999999999999999999 99999998866
Q ss_pred ----eEEEEccCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 ----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 ----~i~yv~Q~~~l~~~ti~eNi~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.++|++|++.+++.|++||+.++.. . . +++..++++.+++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 3899999998888899999988632 1 1 2345556666666544432110 4689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
|++||||++.+|+++||||||++||+.+.+.+++.+.+...+ +|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999987655444344 899999999998765 99999999999999988765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=341.28 Aligned_cols=223 Identities=25% Similarity=0.479 Sum_probs=182.4
Q ss_pred EEEEEEEEEeCCCC--CcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC-C----CcceEEECCeeCCCCCHHH
Q 000481 1216 IELRQLKIRYRPNA--PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE-P----AGGSILIDGVDICSMGLKD 1288 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~--~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~-~----~~G~I~IDG~dI~~i~l~~ 1288 (1467)
++++|+++.|..+. -.+++||||+|++||.+||||.|||||||+.++|+|+.+ | .+|+|.+||.|+.+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 68999999996533 358999999999999999999999999999999999997 3 5799999999999999876
Q ss_pred Hh----hccEEeccCCcc-ccc--chHHhc----CCCCCC-C----HHHHHHHHHHcCCchH---HhhCCCCcccccccC
Q 000481 1289 LR----VKLSIIPQEPTL-FRG--SVRTNL----DPLGLY-S----DDEIWKALEKCQLKTT---ISSLPNKLDSSVSDE 1349 (1467)
Q Consensus 1289 LR----~~i~iIpQdp~L-F~g--TIR~NL----dp~~~~-s----d~ei~~aL~~~~l~~~---i~~lp~gLdt~v~e~ 1349 (1467)
+| +.|++|||||.- |+- ||.+-+ .--... + .+...+.|+.+++.+- ..+-|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 54 489999999852 221 332222 110111 1 3467788999988753 33334
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCC
Q 000481 1350 GENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYG 1426 (1467)
Q Consensus 1350 G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G 1426 (1467)
..||||||||+.||-|++.+|++||-||||++||..+.+.|.+.|++.. .+.|+|+|||++..+.. ||||.||.+|
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 3689999999999999999999999999999999999999999998765 48999999999999976 9999999999
Q ss_pred EEEEecChhHHhc-cCChhH-HHHH
Q 000481 1427 KLLEYDEPSKLME-TNSSFS-KLVA 1449 (1467)
Q Consensus 1427 ~ivE~g~p~~Ll~-~~~~f~-~lv~ 1449 (1467)
+|+|.|+.+++++ +.-.|. .|++
T Consensus 231 ~iVE~g~~~~i~~~P~HPYT~~Ll~ 255 (316)
T COG0444 231 RIVEEGPVEEIFKNPKHPYTRGLLN 255 (316)
T ss_pred EEEEeCCHHHHhcCCCChHHHHHHH
Confidence 9999999999998 444443 4443
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=348.70 Aligned_cols=201 Identities=23% Similarity=0.302 Sum_probs=173.2
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++.. +.++++
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999953 4599999999999999999999999999999999999999999999999998752 346899
Q ss_pred eccCCcccc-cchHHhcCCC---CCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFR-GSVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~-gTIR~NLdp~---~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+||+|.+|. .|+++|+... .... ++++.++++..++.+.... ...+||||||||++||||+
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999987 5999999521 1122 2356778888887654332 2357999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEe--CCEEEEecCh
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLS--YGKLLEYDEP 1434 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~--~G~ivE~g~p 1434 (1467)
+++|++|||||||++||+.+...+.+.|++.. .++|+|+|+|+++.+.. ||+|++|+ +|++++.+++
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999998753 47999999999999866 99999998 5999998764
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=364.10 Aligned_cols=201 Identities=26% Similarity=0.387 Sum_probs=173.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~y 662 (1467)
.++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .|+|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4889999999963 4699999999999999999999999999999999999999999999876 3999
Q ss_pred EccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
|+|++.++. .|++|||.|+.. .+ +++++++++.+++.+..+ ....+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-----------~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHHHH
Confidence 999998875 599999998743 22 234566677776654443 34568999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
+.+|+++|||||||+||+++.+.+.+.+.+... .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999998775554433 38999999999998765 999999999999999999998764
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=340.25 Aligned_cols=192 Identities=31% Similarity=0.418 Sum_probs=162.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~yv 663 (1467)
++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468999999963 4699999999999999999999999999999999999999999999876 38999
Q ss_pred ccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 664 SQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 664 ~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
||++.++. .|++||+.++.. .+. +++.++++.+++.+..+ ....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHHHh
Confidence 99988765 699999987632 122 33455666666654433 445689999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999998765544433 48999999999998765 8999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=335.59 Aligned_cols=186 Identities=24% Similarity=0.359 Sum_probs=163.8
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc--cCCCcceEEECCeeCCCCCHHHH-hhc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--VEPAGGSILIDGVDICSMGLKDL-RVK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl--~~~~~G~I~IDG~dI~~i~l~~L-R~~ 1292 (1467)
++++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999963 4599999999999999999999999999999999999 58999999999999998876654 566
Q ss_pred cEEeccCCccccc-chHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1293 LSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1293 i~iIpQdp~LF~g-TIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
++|+||+|.+|.+ |+++|++ . ...+||+|||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~------------------------~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLR------------------------Y-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHHh------------------------h-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999986 5555550 0 01369999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhc--ccCEEEEEeCCEEEEecChhHHhc
Q 000481 1372 RILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVI--DSDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~--~~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+||+|||||++||.++.+.+.+.|++.. +++|+|+++|+++.+. -||+|++|++|++++.| +.++.+
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~~ 193 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELAL 193 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHHh
Confidence 9999999999999999999999998764 3789999999999998 59999999999999999 666653
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=335.90 Aligned_cols=214 Identities=27% Similarity=0.447 Sum_probs=186.8
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCe---eCCCCCHHHHhh
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGV---DICSMGLKDLRV 1291 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~---dI~~i~l~~LR~ 1291 (1467)
.|+++|++..|+. ..+++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.+||. |.+++..+ .+
T Consensus 2 ~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~R 77 (345)
T COG1118 2 SIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--DR 77 (345)
T ss_pred ceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--hc
Confidence 3778888888853 35899999999999999999999999999999999999999999999999 88874444 47
Q ss_pred ccEEeccCCcccc-cchHHhcCCCCC----------CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1292 KLSIIPQEPTLFR-GSVRTNLDPLGL----------YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~-gTIR~NLdp~~~----------~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
+||+|.|+.-||. .||.+|+. |+- -.+..+.+-|+.++|...-+..|. +||||||||
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIA-FGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~-----------QLSGGQrQR 145 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIA-FGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA-----------QLSGGQRQR 145 (345)
T ss_pred ceeEEEechhhcccchHHhhhh-hcccccccCCChhhHHHHHHHHHHHhcccchhhcCch-----------hcChHHHHH
Confidence 8999999999986 59999995 331 234556777999999887777664 579999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHH
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~L 1437 (1467)
+||||||...|++|+||||.++||+.-.+.+++-+++.. -++|+++|||+.+.+.. ||||+||++|+|...|+|+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999999999888754 37899999999998866 999999999999999999999
Q ss_pred hc-cCChh
Q 000481 1438 ME-TNSSF 1444 (1467)
Q Consensus 1438 l~-~~~~f 1444 (1467)
.. +++.|
T Consensus 226 ~~~P~s~f 233 (345)
T COG1118 226 YDHPASRF 233 (345)
T ss_pred hcCCCccc
Confidence 88 66665
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=328.54 Aligned_cols=170 Identities=31% Similarity=0.550 Sum_probs=157.4
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ..+|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 478999999963 35999999999999999999999999999999999999999999999999998766 677899999
Q ss_pred eccCCccccc-chHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEE
Q 000481 1296 IPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~IL 1374 (1467)
+||+|.+|.+ |+++|+. ||+|||||++||||++++|+||
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999987 9999973 8999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEE
Q 000481 1375 VLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKL 1428 (1467)
Q Consensus 1375 iLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~i 1428 (1467)
+|||||++||..+.+.+.+.|++.. ++.|+|+++|+.+.+.+ ||+|++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999998764 46899999999999884 999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=329.77 Aligned_cols=172 Identities=33% Similarity=0.519 Sum_probs=158.8
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC--HHHHhhcc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG--LKDLRVKL 1293 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~--l~~LR~~i 1293 (1467)
|+++|++++|+. .++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++++.+ ....|+.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999953 45999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred EEeccCCccccc-chHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCC
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ 1372 (1467)
+++||+|.+|.+ |+++|+... ||+|||||++||||++++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998865 999998632 89999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCE
Q 000481 1373 ILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGK 1427 (1467)
Q Consensus 1373 ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ 1427 (1467)
+++|||||++||..+.+.+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999987654 5899999999999985 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=340.89 Aligned_cols=190 Identities=24% Similarity=0.414 Sum_probs=161.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
++++|++++|+.+ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999642 24699999999999999999999999999999999999999999998876
Q ss_pred eEEEEccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 659 SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
.++|++|++.++. .|++||+.++.. .. ++++.++++.+++.+..+ ....+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 3899999998775 699999987521 11 245566677777654443 3446899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeE
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1467)
|||++.+|+++||||||++||+++.+.+.+.+.....+|+|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999877554444458999999999999875 899999999975
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=360.32 Aligned_cols=203 Identities=27% Similarity=0.371 Sum_probs=171.2
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
|+++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999996321 35799999999999999999999999999999999999999999998876
Q ss_pred -eEEEEccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 659 -~i~yv~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
.|+|++|++.++. .|++||+.++.. .+. ++..+.++..++.+.. .....+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKA-----------DRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 3999999998875 699999998632 222 2344455555554332 2456789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999998865554433 38999999999999876 99999999999999999999876
Q ss_pred c
Q 000481 808 A 808 (1467)
Q Consensus 808 ~ 808 (1467)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=336.85 Aligned_cols=189 Identities=33% Similarity=0.505 Sum_probs=162.0
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------eEEEEcc
Q 000481 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------SIAYVSQ 665 (1467)
Q Consensus 596 ~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------~i~yv~Q 665 (1467)
+++|++++|+.. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEec
Confidence 367899999632 4699999999999999999999999999999999999999999999877 4899999
Q ss_pred CC--cCCCCCHHHHHhcCCC---CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000481 666 TS--WIQSGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1467)
Q Consensus 666 ~~--~l~~~ti~eNi~~g~~---~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~i 740 (1467)
++ .+++.|++||+.++.+ .++++..++++.+++.+..+ ....+||||||||++||||++.+|++
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-----------RHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-----------CCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 97 4677899999998643 22356777888887765443 34458999999999999999999999
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEe
Q 000481 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1467)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1467)
+||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999876554444568999999999999875 9999999999974
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=345.27 Aligned_cols=220 Identities=20% Similarity=0.364 Sum_probs=180.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCee-----CCCCCHHH-
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVD-----ICSMGLKD- 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~d-----I~~i~l~~- 1288 (1467)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +..++..+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999988 77776554
Q ss_pred ---HhhccEEeccCCcc---cccchHHhcC----CCCC----CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCC
Q 000481 1289 ---LRVKLSIIPQEPTL---FRGSVRTNLD----PLGL----YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWS 1354 (1467)
Q Consensus 1289 ---LR~~i~iIpQdp~L---F~gTIR~NLd----p~~~----~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS 1354 (1467)
+|+.++++||+|.+ +..|+.+|+. .+.. ..++++.+.++..++.+ +.......+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~LS 150 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAFS 150 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhcC
Confidence 34679999999852 3457777762 1111 12345556666666532 12233456799
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEe
Q 000481 1355 AGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1355 ~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~ 1431 (1467)
||||||++||||++++|++|||||||++||+.+.+.+.+.|++.. .+.|+|+|+|+++.+.. ||++++|++|++++.
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998754 37899999999999985 999999999999999
Q ss_pred cChhHHhc-cCChhHH
Q 000481 1432 DEPSKLME-TNSSFSK 1446 (1467)
Q Consensus 1432 g~p~~Ll~-~~~~f~~ 1446 (1467)
|+++++.. +...|.+
T Consensus 231 ~~~~~~~~~~~~~~~~ 246 (253)
T TIGR02323 231 GLTDQVLDDPQHPYTQ 246 (253)
T ss_pred CCHHHHhcCCCCHHHH
Confidence 99999986 3344443
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=340.60 Aligned_cols=197 Identities=31% Similarity=0.422 Sum_probs=165.7
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------eEEEEcc
Q 000481 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1467)
Q Consensus 595 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------~i~yv~Q 665 (1467)
++++|++++|+... .+++|+|+||+|++|++++|+||||||||||+++|+|.++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999996421 14799999999999999999999999999999999999999999999877 4899999
Q ss_pred CCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcC
Q 000481 666 TSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1467)
Q Consensus 666 ~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~ 737 (1467)
++.++. .|++||+.++.. .. .++..+.++.+++.+.+. ....+||||||||++||||++.+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHHHHHcC
Confidence 998876 699999987532 11 234556666666654443 34568999999999999999999
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEe--CCeEeEecCh
Q 000481 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLE--GGQITQSGNY 802 (1467)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~--~G~i~~~G~~ 802 (1467)
|+++||||||++||+.+.+.+++.+..... .++|+|++||+++.+.. ||+|++|+ +|++++.++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999998875554433 48999999999998765 89999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=340.62 Aligned_cols=197 Identities=21% Similarity=0.369 Sum_probs=167.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~y 662 (1467)
|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 478999999963 4699999999999999999999999999999999999999999999876 3899
Q ss_pred EccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
++|++.++. .|++||+.++.. .+ +++.++.++.+++.+..+ .+..+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 999998765 599999987421 21 234566677777654433 34568999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
+.+|+++||||||++||+++.+.+.+.+.....+ |+|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999987655544444 7899999999999876 899999999999999887664
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=339.47 Aligned_cols=439 Identities=19% Similarity=0.258 Sum_probs=306.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCHH------HHHHHHHhHHHHHhcHHHH-HHHHHHHHHHHHHHHHH
Q 000481 339 FFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTG------EIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGV 411 (1467)
Q Consensus 339 ~~~~~~~~~~ir~~L~~~i~~k~l~l~~~~~~~~~~G------~ivnl~s~Dv~~i~~~~~~-~~~~~~~~l~i~~~~~~ 411 (1467)
.+...++..+.|..|...+.+|-+.-...++ -...| ..=.++..|+..+.+.... ...+..+.++++.-..+
T Consensus 107 ~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~-l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~i 185 (604)
T COG4178 107 TWLNQMLRLRWREWLTKDLLDRWLDPRRYYR-LAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGI 185 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHH-HHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3566789999999999999999988664332 22222 2236888898877664332 23333444444444556
Q ss_pred HHHHHHHH---------HHHHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH
Q 000481 412 LFGVVGLG---------ALPGLVL--FLIC----GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEE 476 (1467)
Q Consensus 412 L~~~lg~~---------~l~gl~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gIr~IK~~~~E~ 476 (1467)
||.+.|.. .++|..+ +++. ..+...++|.+.+...+..+.-..--.....+..+...|-+|+-|+
T Consensus 186 Lw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~ 265 (604)
T COG4178 186 LWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEK 265 (604)
T ss_pred HHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcH
Confidence 66443321 1122111 1111 2222234444444333333333332233445667788899999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHH
Q 000481 477 KFKSLIESRREKEFKWLSEAQLR----KAYGTVIYWM---SPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPV 549 (1467)
Q Consensus 477 ~f~~~i~~~R~~E~~~l~~~~~~----~~~~~~~~~~---~~~~~~~~~f~~~~l~~~~~Lt~~~~ft~l~l~~~l~~pl 549 (1467)
.-++++++.-..-++..++.... ..+.....++ .|.++.+-- .-.+.++.|.+..+...|+.+...+
T Consensus 266 ~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~------~f~g~i~~G~lmqa~~aF~~v~ssl 339 (604)
T COG4178 266 VERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPR------YFSGQITFGGLMQAVGAFGQVHSSL 339 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHh------hhcCcChHHHHHHHHHHHHHHHHHH
Confidence 76666655444433332221111 0111111122 222221111 2237899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCccccc----cc-ccCCCCcEEEEeEEEEeCCCCCCCcccceeEEec
Q 000481 550 RMIPEALSIMIQVKVSFDRINAFLLDHE---LNNDDVRR----IS-LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIK 621 (1467)
Q Consensus 550 ~~l~~~i~~~~~a~vs~~Ri~~fL~~~e---~~~~~~~~----~~-~~~~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~ 621 (1467)
+.+-..+..+.+=++++.|+.+|-..-+ .+.....+ .. ....+..|+++|++..-|++ .+.+++.||+++
T Consensus 340 swfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v~ 417 (604)
T COG4178 340 SWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVR 417 (604)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--CeeeccceeeeC
Confidence 9999999999999999999999974321 11100000 00 01115689999999998754 479999999999
Q ss_pred CCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcCCCCCHHHHHhcCCC---CCHHHHHHHHHHh
Q 000481 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSGSIRDNILYGKP---MDKARYDKAIKAC 696 (1467)
Q Consensus 622 ~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l~~~ti~eNi~~g~~---~~~~~~~~~~~~~ 696 (1467)
+|+.+.|.|+||||||||+++|.|+.|--+|+|.... .+-|+||.|.+..||+||-|++.+. ++++++.+++.+|
T Consensus 418 ~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~v 497 (604)
T COG4178 418 PGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKV 497 (604)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHc
Confidence 9999999999999999999999999999999998873 4899999999999999999999753 6789999999999
Q ss_pred cchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEc
Q 000481 697 ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVT 776 (1467)
Q Consensus 697 ~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvt 776 (1467)
+|.+..+.+.+-++ -...||||||||+++||.++++|++++|||.|||||++++..+++ .++..+.+.|+|-|.
T Consensus 498 gL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q-~l~~~lp~~tvISV~ 571 (604)
T COG4178 498 GLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEELPDATVISVG 571 (604)
T ss_pred CcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHH-HHHhhCCCCEEEEec
Confidence 99999988765443 346799999999999999999999999999999999999999986 456667899999999
Q ss_pred cCcchhhcCCEEEEEe
Q 000481 777 HQVEFLSEVDRILVLE 792 (1467)
Q Consensus 777 H~~~~l~~~d~i~~l~ 792 (1467)
||.......++.+.+.
T Consensus 572 Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 572 HRPTLWNFHSRQLELL 587 (604)
T ss_pred cchhhHHHHhhheeec
Confidence 9988877666655543
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=354.29 Aligned_cols=202 Identities=24% Similarity=0.391 Sum_probs=170.6
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eE
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i 660 (1467)
..++++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 46899999999963 4699999999999999999999999999999999999999999999876 49
Q ss_pred EEEccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 661 AYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 661 ~yv~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
|||||++.++. .|++||+.|... .+. ++..++++.+++.+..+ .+..+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-----------AKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-----------CchhhCCHHHHHHHHHHH
Confidence 99999998765 699999986321 122 23344555555433222 345689999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|++.+|++++|||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999887654444468999999999999976 999999999999999999998654
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=341.99 Aligned_cols=202 Identities=25% Similarity=0.377 Sum_probs=172.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4789999999953 4699999999999999999999999999999999999999999999876 38
Q ss_pred EEEccCCcCCCCCHHHHHhcCCCC---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcC
Q 000481 661 AYVSQTSWIQSGSIRDNILYGKPM---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1467)
Q Consensus 661 ~yv~Q~~~l~~~ti~eNi~~g~~~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~ 737 (1467)
+|++|++.++..|++||+.++... ..++..+.++.+++..+.. .+...+||||||||++||||++.+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA----------TRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh----------hCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999889999999986432 2345556666666643221 245678999999999999999999
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 738 ADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999988765544333 48999999999999875 899999999999999999988754
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=348.39 Aligned_cols=203 Identities=24% Similarity=0.427 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+.. .+++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++| .|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 58999999999642 35699999999999999999999999999999999999999999999887 38
Q ss_pred EEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 661 AYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 661 ~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+|++|++ .+++.|++|||.++.. .+. ++..++++.+++.+.++. ...+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNR-----------EPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 4667899999998632 222 345667777777665554 3458999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||++.+|+++||||||++||+.+.+.+++.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999988755444433 8999999999999888999999999999999999888654
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=343.94 Aligned_cols=198 Identities=31% Similarity=0.433 Sum_probs=166.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 678999999962 24699999999999999999999999999999999999999999998876
Q ss_pred eEEEEccCCcCCC-CCHHHHHhcCCCC---------------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccCh
Q 000481 659 SIAYVSQTSWIQS-GSIRDNILYGKPM---------------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~-~ti~eNi~~g~~~---------------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 722 (1467)
.++|++|++.++. .|++||+.++... +.++..++++.+++...+ ...+.+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 2899999998775 6999999875310 122344555555554333 246679999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999988765544333 37899999999999865 8999999999999999
Q ss_pred ChHHH
Q 000481 801 NYQEL 805 (1467)
Q Consensus 801 ~~~~l 805 (1467)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 98886
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=338.76 Aligned_cols=204 Identities=29% Similarity=0.449 Sum_probs=177.0
Q ss_pred CCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
.+.++++|++++|+.....++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4579999999999753234699999999999999999999999999999999999999999999876
Q ss_pred eEEEEccCCcCCCCCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcC
Q 000481 659 SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~ 737 (1467)
.++|++|++.+++.|++||+.++.. ....++.+..+...+.+.++.++.|..+.+++++.+|||||||||+||||++++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 3899999999998999999998754 223333444455567778888888888888899999999999999999999999
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeE
Q 000481 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1467)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1467)
|+++||||||++||+++.+.+.+.+. ...+++|+|++||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALY-DWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHH-HHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999998876544 44457899999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=343.83 Aligned_cols=199 Identities=30% Similarity=0.411 Sum_probs=166.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
++++|++++|+. +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999964 14699999999999999999999999999999999999999999998865
Q ss_pred eEEEEccCCcCCC-CCHHHHHhcCCC------------CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccCh
Q 000481 659 SIAYVSQTSWIQS-GSIRDNILYGKP------------MD---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~-~ti~eNi~~g~~------------~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 722 (1467)
.++|+||++.++. .|++||+.++.. .. .++..++++.+++... ...++.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 3899999988765 699999987531 01 1233444555544332 2356779999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEec
Q 000481 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1467)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G 800 (1467)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999998775554433 4899999999999988 58999999999999999
Q ss_pred ChHHHH
Q 000481 801 NYQELL 806 (1467)
Q Consensus 801 ~~~~l~ 806 (1467)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 988863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=348.98 Aligned_cols=209 Identities=22% Similarity=0.319 Sum_probs=175.7
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
.|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...+++++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 59999999999633 459999999999999999999999999999999999999999999999999752 12234699
Q ss_pred EeccCCcc---cccchHHhcCCC--------C---CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHH
Q 000481 1295 IIPQEPTL---FRGSVRTNLDPL--------G---LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL 1360 (1467)
Q Consensus 1295 iIpQdp~L---F~gTIR~NLdp~--------~---~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQr 1360 (1467)
|+||+|.+ +..++++|+... . ...++.+.++++..++.+.. |+.+ .+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~----~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-------HRQI----GELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-------cCCc----ccCCHHHHHH
Confidence 99999875 456889987421 0 01234567788888886653 2333 4699999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1361 FCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1361 l~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
++||||++++|+||||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+.. ||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999998764 47899999999998865 9999777 89999999999986
Q ss_pred c
Q 000481 1439 E 1439 (1467)
Q Consensus 1439 ~ 1439 (1467)
+
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 4
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=334.92 Aligned_cols=192 Identities=22% Similarity=0.348 Sum_probs=166.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~yv 663 (1467)
++++|++++|+. .++|+|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 478999999953 4799999999999999999999999999999999999999999999876 38999
Q ss_pred ccCCcCC-CCCHHHHHhcCCC---CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000481 664 SQTSWIQ-SGSIRDNILYGKP---MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1467)
Q Consensus 664 ~Q~~~l~-~~ti~eNi~~g~~---~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~ 739 (1467)
+|++.++ +.|++||+.++.. .++++.+++++..++.+..+ .+..+||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9998876 5799999987532 34566777777777765443 3567899999999999999999999
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999876554444468999999999999875 8999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=315.19 Aligned_cols=211 Identities=28% Similarity=0.397 Sum_probs=183.6
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
+++.+++.+|.+ ...+++||||+++.||.+||.|+|||||||+++.|..++.|++|+|+|||+|+.+- +...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 678999999975 33389999999999999999999999999999999999999999999999999885 5678999999
Q ss_pred eccCCccccc-chHHhcCCCCC---CCHH----HHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1296 IPQEPTLFRG-SVRTNLDPLGL---YSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp~~~---~sd~----ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
++-+.-++.. |.||||..|+. .++. ++.+.-+..++.+. +|..++ +||-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~-------~~rRv~----~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEY-------LDRRVG----EFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHH-------HHHHHh----hhchhhHHHHHHHHHH
Confidence 9977677754 99999975542 3333 44455555666555 344554 5999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhc-ccCEEEEEeCCEEEEecChhHHhc
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFS-NCTVITVAHRVPTVI-DSDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~-~~TvI~IAHRl~ti~-~~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
.++|+|+|||||||+||..|.+.+++.|++... +++||.-+|-++.+. -||||+++.+|+++..|++++|.+
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999999999999987654 899999999999998 599999999999999999999987
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=332.49 Aligned_cols=189 Identities=25% Similarity=0.471 Sum_probs=164.1
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 659 (1467)
+.++++|++++|+.. ..++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999642 24799999999999999999999999999999999999999999999876 4
Q ss_pred EEEEccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCC
Q 000481 660 IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1467)
Q Consensus 660 i~yv~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~ 739 (1467)
|+||+|+|.+++.|++||+.+..++++++..+.++ ++++..+||||||||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998765444433333222 235778999999999999999999999
Q ss_pred EEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecC
Q 000481 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1467)
Q Consensus 740 illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~ 801 (1467)
++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++.+..||++++|++|++.+.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~-~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIRE-EFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999999988765444 456899999999999988899999999999998775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=339.30 Aligned_cols=191 Identities=28% Similarity=0.419 Sum_probs=159.6
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
++++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996421 14699999999999999999999999999999999999999999998764
Q ss_pred --eEEEEccCCcCCCC-CHHHHHhcCCCC---C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 659 --SIAYVSQTSWIQSG-SIRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 659 --~i~yv~Q~~~l~~~-ti~eNi~~g~~~---~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
.++|++|++.++.. |++||+.++... + ++++.++++.+++.+.+ .....+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-----------NHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hcChhhcCHHHHHHH
Confidence 38999999988765 999999986421 1 23445556665554333 245678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeE
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQI 796 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i 796 (1467)
+||||++.+|+++||||||++||+++.+.+.+.+..... +|+|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999988765544434 48999999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=347.35 Aligned_cols=201 Identities=26% Similarity=0.446 Sum_probs=171.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------eE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i 660 (1467)
++++|++++|+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999953 24699999999999999999999999999999999999999999998875 38
Q ss_pred EEEccCCc--CCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 661 AYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 661 ~yv~Q~~~--l~~~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+|++|+|. +++.|++|||.++.. .+ .+++.++++.+++..... ..+..||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-----------RSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CCcccCCHHHHHHHHHH
Confidence 99999985 567899999998642 22 234455566666654433 45678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||++.+|+++||||||++||+.+...+++.+.....+|+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999877654444468999999999999988999999999999999999887543
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=338.49 Aligned_cols=198 Identities=30% Similarity=0.477 Sum_probs=164.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------eE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i 660 (1467)
++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999963 4699999999999999999999999999999999999999999998876 28
Q ss_pred EEEccCCcCCCC-CHHHHHhcCCCCC-----HHHHHHHHHHh-cchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 661 AYVSQTSWIQSG-SIRDNILYGKPMD-----KARYDKAIKAC-ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 661 ~yv~Q~~~l~~~-ti~eNi~~g~~~~-----~~~~~~~~~~~-~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
+|++|++.++.. |++||+.++.... .++..++++.. .+.. ....+..+||||||||++||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKE-----------RRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhh-----------hhhCchhhCCHHHHHHHHHHHH
Confidence 999999988775 9999999864321 11223333333 1211 2235677999999999999999
Q ss_pred HhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHH
Q 000481 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999999999877554444468999999999998765 8999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=334.28 Aligned_cols=190 Identities=23% Similarity=0.307 Sum_probs=161.6
Q ss_pred eEEEEEEEEEeCCC--CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC---CCcceEEECCeeCCCCCHHHH
Q 000481 1215 RIELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE---PAGGSILIDGVDICSMGLKDL 1289 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~--~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~---~~~G~I~IDG~dI~~i~l~~L 1289 (1467)
.+.++|++|.|+.+ ..++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999643 4579999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hhccEEeccCCccccc-chHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhc
Q 000481 1290 RVKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLL 1368 (1467)
Q Consensus 1290 R~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlL 1368 (1467)
|++++++||++.+|.+ |+++|+..... +. .+ +....||+|||||++||||++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~---------~~--------------~~----~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR---------CK--------------GN----EFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh---------hc--------------cc----cchhhCCHHHHHHHHHHHHHh
Confidence 8899999999988875 99999953210 00 12 223469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEc-cCchhhc-ccCEEEEEeCCEEEEec
Q 000481 1369 KRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVA-HRVPTVI-DSDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1369 r~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IA-HRl~ti~-~~DrIlVl~~G~ivE~g 1432 (1467)
++|++|+|||||++||.++.+.+.+.|++..+ ++|+|+++ |+.+.+. .||+|++|++|++++.|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999998643 46766655 5556664 59999999999999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=343.67 Aligned_cols=204 Identities=25% Similarity=0.355 Sum_probs=172.8
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC---CCCcEEEEcC------------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP---KISGTVNLYG------------ 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g------------ 658 (1467)
.|+++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 469999999999999999999999999999999999974 6899999876
Q ss_pred -eEEEEccCCcCCCCCHHHHHhcCCCC---------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 659 -SIAYVSQTSWIQSGSIRDNILYGKPM---------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 659 -~i~yv~Q~~~l~~~ti~eNi~~g~~~---------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
.++|+||++.+++.|++||+.++... .+++..++++.+++.+.+..+ ..+++.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHH
Confidence 38999999999999999999876311 122455667777775444321 2356789999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
+||||++++|+++||||||++||+++...+.+.+ ....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l-~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELL-KELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999887644 444458999999999998875 89999999999999999998864
Q ss_pred c
Q 000481 808 A 808 (1467)
Q Consensus 808 ~ 808 (1467)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 3
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=360.57 Aligned_cols=205 Identities=25% Similarity=0.381 Sum_probs=176.8
Q ss_pred EEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCC----HHHHhhccEE
Q 000481 1220 QLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG----LKDLRVKLSI 1295 (1467)
Q Consensus 1220 nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~----l~~LR~~i~i 1295 (1467)
|++++|.. . .+ |+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ....|+++++
T Consensus 4 ~l~~~~~~--~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGD--F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECC--E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 78999953 2 35 999999999999999999999999999999999999999999999987542 3456889999
Q ss_pred eccCCccccc-chHHhcCC-CCCCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1296 IPQEPTLFRG-SVRTNLDP-LGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp-~~~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
+||+|.+|.+ |+++|+.. ..... ++.+.+.++..++.+.....| .+||||||||++|||||++
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP-----------GRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHHHHc
Confidence 9999999976 99999962 11111 234677888888765544333 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+|++|+|||||++||..+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 9999999999999999999999999987643 7899999999999876 99999999999999999999987
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=339.98 Aligned_cols=197 Identities=24% Similarity=0.359 Sum_probs=165.2
Q ss_pred cEEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 594 SVKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
.++++|++++|+.+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 14799999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEccCCcCCCC-CHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 659 ---SIAYVSQTSWIQSG-SIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 659 ---~i~yv~Q~~~l~~~-ti~eNi~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
.++|++|++.++.. |++||+.++. ..+ +++..++++.+++.+.. .+...+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA-----------NHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 38999999987764 9999998742 122 23445566666554322 34567899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeEecC
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~ 801 (1467)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999988765544433 5899999999999998889999999999998775
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=344.68 Aligned_cols=205 Identities=24% Similarity=0.393 Sum_probs=171.4
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g--------- 658 (1467)
..++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 46899999999963 469999999999999999999999999999999999864 5899998765
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 724 (1467)
.++|++|++.+++.|++||+.++.. . . ++++++.++.+++.+.+. +..++.+.+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 3899999999888899999997631 1 1 234455566666543332 12346678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChH
Q 000481 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 803 (1467)
|||++||||++.+|+++||||||++||+++.+.+.+.+. ...+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIH-ELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999998876544 44457899999999999865 9999999999999999998
Q ss_pred HHHhc
Q 000481 804 ELLLA 808 (1467)
Q Consensus 804 ~l~~~ 808 (1467)
++...
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 88643
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=335.92 Aligned_cols=176 Identities=25% Similarity=0.383 Sum_probs=130.8
Q ss_pred EeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCC-cccccchHHhcCCCC--
Q 000481 1239 TFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEP-TLFRGSVRTNLDPLG-- 1315 (1467)
Q Consensus 1239 ~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp-~LF~gTIR~NLdp~~-- 1315 (1467)
+|..||.+||+||+|-||||++++|.|.++|++|+ ..+ -+++|=||-- .-|+|||++-|.--.
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 45667899999999999999999999999999998 222 3688999942 238999988773110
Q ss_pred CCCHHHHH-HHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000481 1316 LYSDDEIW-KALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRI 1394 (1467)
Q Consensus 1316 ~~sd~ei~-~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~ 1394 (1467)
.+.+.-.+ +.++ |-.|+-.+...-.+|||||.||+++|-||.|++++.+||||+|.||.+..-.+-++
T Consensus 429 ~~~~s~~~~ei~~-----------pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 429 AFGSSYFKTEIVK-----------PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred hcccchhHHhhcC-----------ccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH
Confidence 01111111 1122 22233333333457999999999999999999999999999999999999999999
Q ss_pred HHHHc--CCcEEEEEccCchhhcc-cCEEEEEeC--CEEEEecChhHHhc
Q 000481 1395 IRQEF--SNCTVITVAHRVPTVID-SDMVMVLSY--GKLLEYDEPSKLME 1439 (1467)
Q Consensus 1395 i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~--G~ivE~g~p~~Ll~ 1439 (1467)
||+.. .++|.++|-|++-.+.. +||++|.+. |+=-....|..+.+
T Consensus 498 IRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr~ 547 (591)
T COG1245 498 IRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMRE 547 (591)
T ss_pred HHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHHH
Confidence 98744 57899999999988865 999999975 33333445666654
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=358.97 Aligned_cols=204 Identities=26% Similarity=0.360 Sum_probs=173.8
Q ss_pred CCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eE
Q 000481 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SI 660 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i 660 (1467)
...++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .|
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 346999999999963 4689999999999999999999999999999999999999999999987 38
Q ss_pred EEEccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 661 AYVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 661 ~yv~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
+||+|++-+|. .|+.|||.|+.. .+. ++..+.++..++.+..+ .+..+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK-----------RKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHH
Confidence 99999998886 599999999743 222 34455566666654333 455689999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHhcC
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
||+.+|+++|||||||+||+...+.+.+.+.+... .|.|+|+|||+.+++. .||+|++|++|++++.|+++|+....
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999988765554433 4799999999999865 49999999999999999999998654
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=348.55 Aligned_cols=202 Identities=26% Similarity=0.448 Sum_probs=172.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
.++++|++++|+. +.++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5899999999963 24699999999999999999999999999999999999999999998876
Q ss_pred eEEEEccCC--cCCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 659 SIAYVSQTS--WIQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 659 ~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
.++|++|++ .+++.|++||+.++.. +. .++..++++.+++.... ..++.+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 289999998 5678899999987532 22 23455666666665433 2567899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHh
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999887655444333 899999999999987 599999999999999999999865
Q ss_pred c
Q 000481 808 A 808 (1467)
Q Consensus 808 ~ 808 (1467)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=349.15 Aligned_cols=204 Identities=24% Similarity=0.423 Sum_probs=170.1
Q ss_pred cEEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
.|+++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996421 24699999999999999999999999999999999999999999998866
Q ss_pred ----eEEEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 ----~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.|+|++|+| .+++.|++|||.|+.. .+. ++.+++++.+++..+. ...+..+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCCHHHH
Confidence 279999997 4677899999987532 222 2345556666654222 1245679999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999998876554433468999999999999865 99999999999999999998
Q ss_pred HHh
Q 000481 805 LLL 807 (1467)
Q Consensus 805 l~~ 807 (1467)
+..
T Consensus 232 ~~~ 234 (287)
T PRK13641 232 IFS 234 (287)
T ss_pred Hhc
Confidence 764
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=360.24 Aligned_cols=201 Identities=24% Similarity=0.433 Sum_probs=173.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++| ++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4889999999963 5799999999999999999999999999999999999999999999877 39
Q ss_pred EEEccCCcC-CCCCHHHHHhcCCC-----C------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 661 AYVSQTSWI-QSGSIRDNILYGKP-----M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 661 ~yv~Q~~~l-~~~ti~eNi~~g~~-----~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
|||+|++.+ ++.|++||+.+++. + +.++++++++..++.+..+ ....+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----------~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----------RPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 999999876 67899999998742 1 1234566667666654332 35678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
+|||||+++|+++||||||++||+.+...+.+.+.....+|+|+|++||+++.+.+ ||++++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999876554444468999999999999865 99999999999999999999875
Q ss_pred c
Q 000481 808 A 808 (1467)
Q Consensus 808 ~ 808 (1467)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=341.57 Aligned_cols=208 Identities=25% Similarity=0.405 Sum_probs=179.2
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
-++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999963 3599999999999999999999999999999999999999999999997 45799
Q ss_pred EeccCCcccc---cchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1295 IIPQEPTLFR---GSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1295 iIpQdp~LF~---gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
|+||+|.++. .|+++|+......+++++.++++.+++.+..... ...||+|||||++||||++++|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998765 3889987432234677899999999987665432 3469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhccCChhHHHH
Q 000481 1372 RILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 1448 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~~~~~f~~lv 1448 (1467)
++|||||||++||..+.+.+.+.|++..+ ++|+|+|+|+++.+.+ ||+|++|++ ++++.|+++++.+ +..|.+++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~~~~ 217 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFISMF 217 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHHHHh
Confidence 99999999999999999999999987543 7899999999999865 999999965 7999999999875 33454443
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=339.50 Aligned_cols=200 Identities=23% Similarity=0.385 Sum_probs=168.5
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~y 662 (1467)
++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++| .++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 678999999963 4699999999999999999999999999999999999999999998876 3899
Q ss_pred EccCCcC-CCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWI-QSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l-~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
++|++.+ +..|++||+.++.. ... ++..+.++..++.+ ....+..+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-----------RADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHH
Confidence 9999877 56799999987532 222 22333444444432 23456779999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
+.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999998875544432 58999999999999988999999999999999999888654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=329.41 Aligned_cols=172 Identities=27% Similarity=0.493 Sum_probs=156.3
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH-HHHhhcc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL-KDLRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l-~~LR~~i 1293 (1467)
-|+++|++++| +|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+. ...|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999999 8999999999999999999999999999999999999999999999999998874 4568899
Q ss_pred EEeccCC----cccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1294 SIIPQEP----TLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1294 ~iIpQdp----~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
+|+||+| .++..|+++|+..... ||+|||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 3445799999853210 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEE
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKL 1428 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~i 1428 (1467)
+|++|+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999998763 47899999999999987 999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=343.10 Aligned_cols=205 Identities=28% Similarity=0.389 Sum_probs=170.9
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC---------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g--------- 658 (1467)
..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 36899999999963 4699999999999999999999999999999999999987 489998765
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~----~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 724 (1467)
.++|++|++.+++.|++|||.++.. .+ +++..++++.+++.+.+. + ....++.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~----~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---D----KLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---H----HHhCCcccCCHHH
Confidence 3899999999888999999998642 12 123445555555532221 1 1234678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChH
Q 000481 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 803 (1467)
|||++||||++.+|+++||||||++||+.+.+.+++.+.. ..+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIIN-LKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999998765444 4457899999999999865 8999999999999999999
Q ss_pred HHHhc
Q 000481 804 ELLLA 808 (1467)
Q Consensus 804 ~l~~~ 808 (1467)
++...
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 88653
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=341.12 Aligned_cols=197 Identities=28% Similarity=0.326 Sum_probs=168.7
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------eEEEEc
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------~i~yv~ 664 (1467)
..|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 46999999999963 4699999999999999999999999999999999999999999998876 489999
Q ss_pred cCCcCCC-CCHHHHHhcCCC-CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q 000481 665 QTSWIQS-GSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1467)
Q Consensus 665 Q~~~l~~-~ti~eNi~~g~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~ill 742 (1467)
|++.++. .|++||+.++.. ..+++..++++..++.+..+ .+..+||||||||++||||++.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998776 699999998642 12345666777776654332 4567999999999999999999999999
Q ss_pred EeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChH
Q 000481 743 FDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 743 LDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 803 (1467)
|||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999988765544333 47999999999999865 8999999999999888754
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=331.62 Aligned_cols=182 Identities=24% Similarity=0.428 Sum_probs=161.2
Q ss_pred eEEEEEEEEEeCCC----CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhccc--CCCcceEEECCeeCCCCCHHH
Q 000481 1215 RIELRQLKIRYRPN----APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV--EPAGGSILIDGVDICSMGLKD 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~----~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~--~~~~G~I~IDG~dI~~i~l~~ 1288 (1467)
.|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999642 246999999999999999999999999999999999999 9999999999999875 36
Q ss_pred HhhccEEeccCCccccc-chHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHh
Q 000481 1289 LRVKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1289 LR~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAl 1367 (1467)
+|++++++||+|.+|.+ |+++|+... ..+ . .||+|||||++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~---------~~~---~---------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFA---------AKL---R---------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHH---------HHh---c---------------------cCCHHHHHHHHHHHHH
Confidence 78899999999998875 999998410 000 0 6999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCch-hhcc-cCEEEEEeCCEEEEec
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVP-TVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~-ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
+++|++|+|||||++||..+.+.+.+.|++.. +++|+|+|+|+++ .+.+ ||+|++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998764 4789999999997 4544 9999999999998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=348.05 Aligned_cols=199 Identities=29% Similarity=0.387 Sum_probs=167.1
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------------
Q 000481 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------------- 658 (1467)
Q Consensus 596 ~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----------------- 658 (1467)
.++|+++.|+. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 34567777753 4689999999999999999999999999999999999999999998865
Q ss_pred eEEEEccCCcCC-CCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 659 SIAYVSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 659 ~i~yv~Q~~~l~-~~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
.++|++|++.++ +.|++||+.++.. .+ ++++.++++.+++.+.+.. ...+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-----------YPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------CcccCCHHHHHHHHH
Confidence 389999999887 4699999987531 11 2345667777777655543 445899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999998765544333 48999999999998765 899999999999999999998754
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=336.34 Aligned_cols=195 Identities=21% Similarity=0.353 Sum_probs=163.8
Q ss_pred EEEEeEEEEeCCCCC-CCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEE
Q 000481 595 VKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~ 661 (1467)
++++|++++|+.... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 678999999964211 2699999999999999999999999999999999999999999999876 389
Q ss_pred EEccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 662 YVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 662 yv~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
|++|++.++. .|++||+.+... .. .++..++++..++.+.+ .++..+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-----------DRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hhhhhhcCHHHHHHHHHHHH
Confidence 9999998877 499999976421 11 23445566666664433 24667899999999999999
Q ss_pred HhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999998876555444468999999999998875 8999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=339.45 Aligned_cols=202 Identities=26% Similarity=0.406 Sum_probs=168.7
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999996421 12799999999999999999999999999999999999999999998765
Q ss_pred -eEEEEccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 659 -SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 659 -~i~yv~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
.++|+||++.++. .|++||+.++.. .+ .++..+.++..++.+.++ ....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 3899999998886 699999987532 22 223445555555543332 455789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999987655444343 8999999999999875 89999999999999999887753
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=335.59 Aligned_cols=190 Identities=36% Similarity=0.571 Sum_probs=160.4
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------eEEEEccCC
Q 000481 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQTS 667 (1467)
Q Consensus 596 ~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------~i~yv~Q~~ 667 (1467)
+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 77 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRR 77 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccc
Confidence 36789999963 4699999999999999999999999999999999999999999999987 399999998
Q ss_pred cC---CCCCHHHHHhcCCCC-----------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 668 WI---QSGSIRDNILYGKPM-----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 668 ~l---~~~ti~eNi~~g~~~-----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
.+ ++.|++||+.++... .+++.+++++.+++.+.++ ....+||||||||++||||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~a 146 (213)
T cd03235 78 SIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLARA 146 (213)
T ss_pred ccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHH
Confidence 75 457999999886421 1235566777777765443 3456899999999999999
Q ss_pred HhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++++.. ||+|++|++| +++.|
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999877555444468999999999999876 8999999886 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=335.97 Aligned_cols=198 Identities=24% Similarity=0.439 Sum_probs=167.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~y 662 (1467)
++++|+++.|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4789999999642 25699999999999999999999999999999999999999999998876 3899
Q ss_pred EccCCcCC-CCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQ-SGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~-~~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
++|++.++ +.|++||+.++.. .. .++++++++.+++.+..+ ....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-----------KRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------ChhhhCCHHHHHHHHHHHHH
Confidence 99999887 5799999987421 22 234556666666654332 34568999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
+.+|+++||||||++||+.+.+.+.+.+ ....+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l-~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHH-HHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999987644 444456999999999999875 899999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=339.23 Aligned_cols=199 Identities=23% Similarity=0.409 Sum_probs=166.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------eE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i 660 (1467)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 468999999963 4699999999999999999999999999999999999999999998865 38
Q ss_pred EEEccCCcCCCC-CHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 661 AYVSQTSWIQSG-SIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 661 ~yv~Q~~~l~~~-ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
+|++|++.++.. |++||+.++.+ ... ++.++.++..++.+ .......+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-----------LRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHHHH
Confidence 999999988775 99999987532 121 22334444444432 223566799999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
|++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999876554444468999999999988765 89999999999999999888753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=327.01 Aligned_cols=177 Identities=32% Similarity=0.511 Sum_probs=161.0
Q ss_pred EEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEe
Q 000481 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296 (1467)
Q Consensus 1217 ~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iI 1296 (1467)
|++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 57899999964 4599999999999999999999999999999999999999999999999999998888899999999
Q ss_pred ccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000481 1297 PQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVL 1376 (1467)
Q Consensus 1297 pQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiL 1376 (1467)
|| +++.+++.++... ...+||+|||||++||||++++|+++||
T Consensus 79 ~q--------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 7788888765443 2357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1377 DEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1377 DEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
||||++||.++.+.+.+.|++..+ ++|+|+++|+++.+.+ ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999987654 7899999999999855 9999999999998764
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=340.74 Aligned_cols=203 Identities=29% Similarity=0.425 Sum_probs=169.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCC-----CcEEEEcC-----------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG----------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~-----~G~i~~~g----------- 658 (1467)
++++|++++|+. .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 36999999999999999999999999999999999999998 99998865
Q ss_pred ----eEEEEccCCcCCCCCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 ----SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 ----~i~yv~Q~~~l~~~ti~eNi~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.++|+||++.+++.|++||+.++.. .+. ++..++++..++.++++ ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 3899999999988999999987532 121 23445566666653221 1223567899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
|++||||++.+|+++||||||++||+++...+++.+ ....+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELI-QELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999887644 444445899999999998865 899999999999999999887
Q ss_pred Hhc
Q 000481 806 LLA 808 (1467)
Q Consensus 806 ~~~ 808 (1467)
...
T Consensus 231 ~~~ 233 (247)
T TIGR00972 231 FTN 233 (247)
T ss_pred HhC
Confidence 643
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=338.20 Aligned_cols=203 Identities=24% Similarity=0.323 Sum_probs=168.5
Q ss_pred EEEEEEEEEeCCC--CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccC---CCcceEEECCeeCCCCCHHHHh
Q 000481 1216 IELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE---PAGGSILIDGVDICSMGLKDLR 1290 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~--~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~---~~~G~I~IDG~dI~~i~l~~LR 1290 (1467)
++|+||+++|... .+++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. ..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~---~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh---HHhc
Confidence 6799999999654 3679999999999999999999999999999999999999 999999999998853 4678
Q ss_pred hccEEeccCCccccc-chHHhcCCC---C--CCCHH-----HHHH-HHHHcCCchHHhhCCCCcccccccCCCCCChhHH
Q 000481 1291 VKLSIIPQEPTLFRG-SVRTNLDPL---G--LYSDD-----EIWK-ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~g-TIR~NLdp~---~--~~sd~-----ei~~-aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
++++++||++.+|.+ |+++|+... . ...++ .+.+ .++..++.+ .......+||+|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-----------IGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-----------hhcccccCcCHHHH
Confidence 999999999999988 999999521 1 11111 1122 344443322 22234467999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCc-hhh-cccCEEEEEeCCEEEEec
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRV-PTV-IDSDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1359 Qrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl-~ti-~~~DrIlVl~~G~ivE~g 1432 (1467)
||++||||++++|+||||||||++||+.+.+.+.+.|++.. +++|+|+++|++ ..+ .-||+|++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998754 478999999998 355 459999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=335.10 Aligned_cols=192 Identities=30% Similarity=0.431 Sum_probs=162.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~yv 663 (1467)
|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 478999999964 4699999999999999999999999999999999999999999999876 38999
Q ss_pred ccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 664 SQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 664 ~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
+|++.++. .|++||+.++.. ... +++.++++..++.+..+ ....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-----------RKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 99998875 699999987532 222 23445555555554333 455789999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
.+|+++||||||++||+++.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999998775544443 48999999999998876 8999999999998865
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=350.06 Aligned_cols=202 Identities=26% Similarity=0.389 Sum_probs=169.6
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eE
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i 660 (1467)
..|+++|++++|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 35899999999963 4699999999999999999999999999999999999999999999876 49
Q ss_pred EEEccCCcCC-CCCHHHHHhcC-C--CCCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 661 AYVSQTSWIQ-SGSIRDNILYG-K--PMDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 661 ~yv~Q~~~l~-~~ti~eNi~~g-~--~~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
+|+||++.++ ..|++||+.+. . ..+.+ +.+++++.+++.+.. ..+..+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCchhhCCHHHHHHHHHHH
Confidence 9999999877 46999999752 1 12222 233444544443322 2455689999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999887655544568999999999999875 999999999999999999988643
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=342.57 Aligned_cols=212 Identities=21% Similarity=0.296 Sum_probs=178.0
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcc--cCCCcceEEECCeeCCCCCHHHHhh-
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRL--VEPAGGSILIDGVDICSMGLKDLRV- 1291 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl--~~~~~G~I~IDG~dI~~i~l~~LR~- 1291 (1467)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++..++.+..++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4999999999963 3599999999999999999999999999999999998 6899999999999999888766554
Q ss_pred ccEEeccCCccccc-chHHhcCCC-C---------CCC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChh
Q 000481 1292 KLSIIPQEPTLFRG-SVRTNLDPL-G---------LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAG 1356 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~g-TIR~NLdp~-~---------~~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~G 1356 (1467)
.++++||+|.+|.+ |+++|+... . ..+ ++.+.++|+.+++.+.. ++..+. ..||||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LSgG 155 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSF------LSRNVN---EGFSGG 155 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhh------hccccc---cCCCHH
Confidence 58899999999987 788887421 1 011 13456677777765211 222222 249999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc--cCEEEEEeCCEEEEecC
Q 000481 1357 QRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID--SDMVMVLSYGKLLEYDE 1433 (1467)
Q Consensus 1357 QrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~--~DrIlVl~~G~ivE~g~ 1433 (1467)
||||++||||++++|+||||||||++||.++.+.+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++|++++.|+
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999998764 47999999999999875 89999999999999999
Q ss_pred hhHH
Q 000481 1434 PSKL 1437 (1467)
Q Consensus 1434 p~~L 1437 (1467)
|+++
T Consensus 236 ~~~~ 239 (252)
T CHL00131 236 AELA 239 (252)
T ss_pred hhhh
Confidence 9844
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=345.20 Aligned_cols=204 Identities=25% Similarity=0.393 Sum_probs=173.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334699999999999999999999999999999999999999999999876 38
Q ss_pred EEEccCCc--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 661 ~yv~Q~~~--l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+|++|+|. +++.|+.|||.++.. ... ++++++++.+++..... .....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999983 677899999987531 222 23456666666654333 34578999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999987655444333 8999999999999988999999999999999999988754
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=327.92 Aligned_cols=181 Identities=24% Similarity=0.341 Sum_probs=160.0
Q ss_pred eEEEEEEEEEeCCC--CCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhccc--CCCcceEEECCeeCCCCCHHHHh
Q 000481 1215 RIELRQLKIRYRPN--APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV--EPAGGSILIDGVDICSMGLKDLR 1290 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~--~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~--~~~~G~I~IDG~dI~~i~l~~LR 1290 (1467)
.|+++|++++|.++ ..++|+|+||+|++||.+||+|++|||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 58999999999642 246999999999999999999999999999999999986 489999999999986 5678
Q ss_pred hccEEeccCCccccc-chHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhcc
Q 000481 1291 VKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1291 ~~i~iIpQdp~LF~g-TIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr 1369 (1467)
++++++||+|.+|.+ |+++|+.. . ..++ +||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~-~--------~~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRF-S--------ALLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHH-H--------HHHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999998875 99999851 0 0000 699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchh-h-cccCEEEEEeC-CEEEEec
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPT-V-IDSDMVMVLSY-GKLLEYD 1432 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVl~~-G~ivE~g 1432 (1467)
+|++|+|||||+++|.++.+.+.+.|++.. +++|+|+|+|+++. + ..||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999998754 47999999999984 4 56999999999 9999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=320.61 Aligned_cols=164 Identities=29% Similarity=0.405 Sum_probs=150.4
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
|+++|++++|+.+ +++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5799999999643 45999999999999999999999999999999999999999999999982 68999
Q ss_pred eccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000481 1296 IPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILV 1375 (1467)
Q Consensus 1296 IpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILi 1375 (1467)
+||+|.++++|+++|+... ....||+|||||++||||++++|++|+
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999521 235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCEEEEEeCCE
Q 000481 1376 LDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGK 1427 (1467)
Q Consensus 1376 LDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~DrIlVl~~G~ 1427 (1467)
|||||++||.++.+.+.+.|++. ++|+|++||+++....||+|++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999876 689999999999888899999998863
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=353.45 Aligned_cols=202 Identities=26% Similarity=0.405 Sum_probs=170.2
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eE
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i 660 (1467)
..|+++|++++|+. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .|
T Consensus 40 ~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 40 VAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred eeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 46999999999963 4699999999999999999999999999999999999999999999877 39
Q ss_pred EEEccCCcCC-CCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 661 AYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 661 ~yv~Q~~~l~-~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
||+||++.++ ..|++||+.+... .+. ++.+++++.+++.+.. ..+..+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DARVSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------CCChhhCCHHHHHHHHHHH
Confidence 9999999875 5699999985221 222 2233444444443221 2456789999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|++++|+++||||||++||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|++|++|+++..|+.+++...
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999987665544568999999999999976 999999999999999999998653
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=341.03 Aligned_cols=203 Identities=28% Similarity=0.398 Sum_probs=167.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
++++|++++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999742 4699999999999999999999999999999999999999999998876 389
Q ss_pred EEccCCcCCC-CCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 662 YVSQTSWIQS-GSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 662 yv~Q~~~l~~-~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
|++|++.++. .|++||+.++.. .+. ++..++++..++.. .....+.+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999998875 699999987532 221 23344444444432 011235678999999999999999
Q ss_pred HhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999988765554433 38999999999998765 899999999999999998887543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=334.87 Aligned_cols=193 Identities=24% Similarity=0.345 Sum_probs=164.8
Q ss_pred EEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCH----HHHhhcc
Q 000481 1218 LRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL----KDLRVKL 1293 (1467)
Q Consensus 1218 f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l----~~LR~~i 1293 (1467)
++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++.++. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999963 359999999999999999999999999999999999999999999999999875542 2467899
Q ss_pred EEeccCCcccc-cchHHhcCCC---CC----CCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1294 SIIPQEPTLFR-GSVRTNLDPL---GL----YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1294 ~iIpQdp~LF~-gTIR~NLdp~---~~----~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
+++||+|.+|. .|+++|+... .. ..++++.++++..++.+.... . ..+||+|||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-------K----IYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcC-------C----hhhCCHHHHHHHHHHH
Confidence 99999999997 6999999521 11 124567788888887554322 2 3469999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcccCEEEEE
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVIDSDMVMVL 1423 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVl 1423 (1467)
||+++|++|||||||++||.++.+.+.+.|++.. +++|+|+++|+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999998764 378999999999988889999986
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=346.77 Aligned_cols=205 Identities=20% Similarity=0.357 Sum_probs=169.4
Q ss_pred cEEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 594 SVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
.++++|++++|+... ..++|+|+||+|++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999996432 14699999999999999999999999999999999999999999998866
Q ss_pred ----eEEEEccCC--cCCCCCHHHHHhcCCC---CCHHH----HHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 ----SIAYVSQTS--WIQSGSIRDNILYGKP---MDKAR----YDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 ----~i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~~~----~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.|+|++|++ .+++.|++|||.++.. .+.++ .+++++..++.... ...+..+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL----------FEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHH
Confidence 289999997 5778899999987532 22222 33344444443211 2356678999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999877655444458999999999998865 89999999999999999988
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+.+.
T Consensus 232 ~~~~ 235 (280)
T PRK13649 232 IFQD 235 (280)
T ss_pred HhcC
Confidence 7653
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=342.14 Aligned_cols=206 Identities=28% Similarity=0.410 Sum_probs=172.7
Q ss_pred CCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC--------
Q 000481 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG-------- 658 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g-------- 658 (1467)
...++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 356899999999963 469999999999999999999999999999999999986 5899998765
Q ss_pred -------eEEEEccCCcCCCCCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChH
Q 000481 659 -------SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1467)
Q Consensus 659 -------~i~yv~Q~~~l~~~ti~eNi~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 723 (1467)
.++|++|++.++..|++||+.++.. .+. ++..++++.+++..++. ...+++..+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 3899999998888999999997632 222 34455666666543332 2234677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecCh
Q 000481 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1467)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~ 802 (1467)
||||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++.+.. ||++++|++|++++.|+.
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999887654443 457899999999999865 899999999999999999
Q ss_pred HHHHhc
Q 000481 803 QELLLA 808 (1467)
Q Consensus 803 ~~l~~~ 808 (1467)
+++...
T Consensus 240 ~~~~~~ 245 (260)
T PRK10744 240 DTIFTK 245 (260)
T ss_pred HHHHhC
Confidence 888653
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=343.91 Aligned_cols=204 Identities=25% Similarity=0.412 Sum_probs=172.5
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 659 (1467)
..++++|++++|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 6 ~~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 358999999999632 35799999999999999999999999999999999999999999998876 3
Q ss_pred EEEEccCC--cCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 660 IAYVSQTS--WIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 660 i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
++|++|+| .+++.|++|||.++.. ++.+ +..++++..++.+.++ .+..+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-----------KEPQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CCcccCCHHHHHHHHH
Confidence 89999998 4567899999998632 2332 3455566666655443 4557999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|||++.+|+++||||||++||+.+.+.+++.+.+...+ ++|+|++||+++.+..||+|++|++|++.+.|+.+++...
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999988755544444 5899999999999888999999999999999998887653
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=337.98 Aligned_cols=200 Identities=26% Similarity=0.417 Sum_probs=168.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------e
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------~ 659 (1467)
++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 679999999963 4699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
++|++|++.++. .|++||+.++.. .+. +++.++++..++.+.+ ..+..+||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERA-----------HHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH-----------hcChhhcCHHHHHHHHH
Confidence 899999988775 699999988631 222 2334455555544333 24567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|||++.+|++++|||||++||+++.+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999876544433458999999999999875 899999999999999999887653
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=334.77 Aligned_cols=200 Identities=25% Similarity=0.344 Sum_probs=169.3
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCC----CHHHHhh
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM----GLKDLRV 1291 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i----~l~~LR~ 1291 (1467)
+++ |++++|+.. .+ |+||+|++ |.+||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|+
T Consensus 2 ~~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 2 LCV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred cee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 345 899999642 24 99999999 99999999999999999999999999999999999998643 3446788
Q ss_pred ccEEeccCCcccc-cchHHhcCCC-CCC----CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHH
Q 000481 1292 KLSIIPQEPTLFR-GSVRTNLDPL-GLY----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1292 ~i~iIpQdp~LF~-gTIR~NLdp~-~~~----sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LAR 1365 (1467)
+++++||++.+|. .|+++|+... ..+ .++++.++++..++.+... ....+||+|||||++|||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~ 144 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-----------RYPAQLSGGEKQRVALAR 144 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-----------cCcccCCHHHHHHHHHHH
Confidence 9999999999986 4999999521 111 2345677788777654432 234579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEec
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYD 1432 (1467)
Q Consensus 1366 AlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g 1432 (1467)
|++++|+||||||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.+ ||+|++|++|++++.|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999987643 7899999999999965 9999999999999875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=345.26 Aligned_cols=204 Identities=22% Similarity=0.350 Sum_probs=173.7
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCC---cEEEEcC-----------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS---GTVNLYG----------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~---G~i~~~g----------- 658 (1467)
..++++|++|+|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 468999999999643 2469999999999999999999999999999999999999988 8998876
Q ss_pred --eEEEEccCCc--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 659 --~i~yv~Q~~~--l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
.++|++|+|. +++.|++|||.|+.. .+. +++.++++.+++.+... ....+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-----------SEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHH
Confidence 3899999984 567899999998632 222 34556677777765443 3456999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHH
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999998775544433 389999999999999889999999999999999998876
Q ss_pred hc
Q 000481 807 LA 808 (1467)
Q Consensus 807 ~~ 808 (1467)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 53
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=344.11 Aligned_cols=204 Identities=24% Similarity=0.376 Sum_probs=174.2
Q ss_pred cEEEEeEEEEeCCCC---CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------
Q 000481 594 SVKIQEGNFSWDPEL---AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~---~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------ 658 (1467)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 588999999996421 24699999999999999999999999999999999999999999998875
Q ss_pred --eEEEEccCCc--CCCCCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 659 --SIAYVSQTSW--IQSGSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 659 --~i~yv~Q~~~--l~~~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
.++|++|+|. ++..|+.||+.|+.. .+ +++++++++.+++.+.++. ...+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-----------APHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHH
Confidence 3899999984 566799999998632 22 2446667777777655543 446899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHH
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~ 806 (1467)
++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999998765444333 489999999999998889999999999999999999986
Q ss_pred hc
Q 000481 807 LA 808 (1467)
Q Consensus 807 ~~ 808 (1467)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=347.16 Aligned_cols=206 Identities=22% Similarity=0.368 Sum_probs=167.7
Q ss_pred CcEEEEeEEEEeCCCC--CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------
Q 000481 593 RSVKIQEGNFSWDPEL--AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~--~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------ 658 (1467)
+.|+++|++++|+... ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4689999999996432 13599999999999999999999999999999999999999999998755
Q ss_pred ------eEEEEccCCc--CCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChH
Q 000481 659 ------SIAYVSQTSW--IQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1467)
Q Consensus 659 ------~i~yv~Q~~~--l~~~ti~eNi~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 723 (1467)
.|+|++|+|. +++.|++||+.|+.. ...+ +..+.++..++.. + .......+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------~---~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE-------D---YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-------h---HhcCChhhCCHH
Confidence 3899999984 567899999998632 2222 2223333333311 1 123567799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecC
Q 000481 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1467)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~ 801 (1467)
||||++||||++.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999988765544333 48999999999998765 89999999999999999
Q ss_pred hHHHHhc
Q 000481 802 YQELLLA 808 (1467)
Q Consensus 802 ~~~l~~~ 808 (1467)
++++...
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 9887653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=334.46 Aligned_cols=192 Identities=27% Similarity=0.421 Sum_probs=160.0
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
++++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68899999996421 24699999999999999999999999999999999999999999998865
Q ss_pred --eEEEEccCCcCCC-CCHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHH
Q 000481 659 --SIAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 659 --~i~yv~Q~~~l~~-~ti~eNi~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv 728 (1467)
.++|++|++.++. .|++||+.++. ..+ .++..+.++.+++.+.+ .....+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI-----------NHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHH
Confidence 3899999998875 69999998742 122 22344555555554333 245578999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEe
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQIT 797 (1467)
Q Consensus 729 ~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~ 797 (1467)
+||||++.+|+++||||||++||+++.+.+.+.+..... .++|+|++||+++.+..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999998765544333 479999999999998889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=331.91 Aligned_cols=192 Identities=28% Similarity=0.443 Sum_probs=162.1
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------eEEEEcc
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------~i~yv~Q 665 (1467)
++++|+++.|+. +++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 468999999963 4699999999999999999999999999999999999999999999987 4999999
Q ss_pred CCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcC
Q 000481 666 TSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1467)
Q Consensus 666 ~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~ 737 (1467)
++.++. .|++||+.++.. .. +++..+.++..++.... ..+..+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHHHhcC
Confidence 998776 599999987431 11 23344555555554433 245678999999999999999999
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999887655444468999999999999865 8999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=337.50 Aligned_cols=204 Identities=22% Similarity=0.347 Sum_probs=169.3
Q ss_pred ceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCC----CcceEEECCeeCCCCCHHHHhhccEEeccCCc-ccc--
Q 000481 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP----AGGSILIDGVDICSMGLKDLRVKLSIIPQEPT-LFR-- 1304 (1467)
Q Consensus 1232 vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~----~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~-LF~-- 1304 (1467)
+|+|+||+|++||.+||+|++|||||||+++|.|+++| ++|+|.+||.++... ...+++++|+||+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998764 223468999999995 343
Q ss_pred cchHHhcC-C---CCCC---CHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000481 1305 GSVRTNLD-P---LGLY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLD 1377 (1467)
Q Consensus 1305 gTIR~NLd-p---~~~~---sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLD 1377 (1467)
-|+.+|+. + .+.. .++++.++++.+++.+. ++.......+||+|||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 48888762 1 1111 23457888888887631 11123334579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc-cCChhH
Q 000481 1378 EANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNSSFS 1445 (1467)
Q Consensus 1378 EaTs~lD~~Te~~Iq~~i~~~~~--~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~-~~~~f~ 1445 (1467)
|||++||..+.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++.. +...|.
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 222 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHH
Confidence 99999999999999999987643 7899999999999965 99999999999999999999987 344444
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=343.99 Aligned_cols=202 Identities=26% Similarity=0.436 Sum_probs=176.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~ 661 (1467)
.++++|++..|.. ++.+|+||||+|++|+++|++||||||||||+++|+|++.|++|+|.+.| +||
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 4788999999963 25799999999999999999999999999999999999999999999987 499
Q ss_pred EEccCCcCC-CCCHHHHHhcCC-----C--CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 662 YVSQTSWIQ-SGSIRDNILYGK-----P--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 662 yv~Q~~~l~-~~ti~eNi~~g~-----~--~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
|+||+|.++ ..|++||+.|-. + .++++.+++++..+|.++- ..+..+||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 999999765 569999999732 2 2356788888888876522 24567899999999999999
Q ss_pred HhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCC-cEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK-KTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~-~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|..+|++|||||||++||+..+..+++.+.....+| +||+++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 999999999999999999999999887666666666 799999999999987 999999999999999998887543
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=340.83 Aligned_cols=203 Identities=27% Similarity=0.406 Sum_probs=170.2
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
+.++++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46899999999963 4699999999999999999999999999999999999999999998765
Q ss_pred ------------eEEEEccCCcCCC-CCHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCC
Q 000481 659 ------------SIAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRG 717 (1467)
Q Consensus 659 ------------~i~yv~Q~~~l~~-~ti~eNi~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g 717 (1467)
.++|+||++.++. .|++||+.++. ..+. ++..+.++..++...+ .....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 3899999998886 59999998742 1222 2334445554443322 12456
Q ss_pred CccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeE
Q 000481 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1467)
Q Consensus 718 ~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1467)
.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.....+|+|+|+|||+++.+.. ||+|++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999886554444458999999999999986 899999999999
Q ss_pred eEecChHHHHhc
Q 000481 797 TQSGNYQELLLA 808 (1467)
Q Consensus 797 ~~~G~~~~l~~~ 808 (1467)
++.|+++++...
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999887643
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=342.46 Aligned_cols=202 Identities=23% Similarity=0.322 Sum_probs=169.2
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
..++++|++++|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 35899999999953 4699999999999999999999999999999999999999999998875
Q ss_pred --eEEEEccCCcCCCC-CHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 659 --SIAYVSQTSWIQSG-SIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 659 --~i~yv~Q~~~l~~~-ti~eNi~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
.++|++|++.++.. |++||+.++. ..+. ++..+.++.+++.+.. ..+..+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA-----------KLMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHH
Confidence 38999999988875 9999998742 1222 2333445555543322 24567899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
++||||++.+|+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999988765544333 37999999999999876 899999999999999999998
Q ss_pred Hhc
Q 000481 806 LLA 808 (1467)
Q Consensus 806 ~~~ 808 (1467)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 754
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=315.04 Aligned_cols=214 Identities=26% Similarity=0.426 Sum_probs=181.9
Q ss_pred ceEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH-Hhhc
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LRVK 1292 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~-LR~~ 1292 (1467)
+.+..+|+..+|. ..+|.+||||++++||.||+.||+||||||.+.++.|++.|++|+|.+||.||+.++.+. -|-.
T Consensus 3 ~~L~a~~l~K~y~--kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYK--KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhC--CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 4688899999995 346999999999999999999999999999999999999999999999999999999987 4778
Q ss_pred cEEeccCCccccc-chHHhcCCCCCCCH---------HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHH
Q 000481 1293 LSIIPQEPTLFRG-SVRTNLDPLGLYSD---------DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1293 i~iIpQdp~LF~g-TIR~NLdp~~~~sd---------~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~ 1362 (1467)
|||+||||.+|.+ |+++||...-+..+ +++.+-|+..++.. .-...|..||||||+|+-
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h-----------lr~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH-----------LRDSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH-----------HhcCcccccccchHHHHH
Confidence 9999999999988 99999953322222 22334444444432 223446789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCch-hhcccCEEEEEeCCEEEEecChhHHhcc
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVP-TVIDSDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1363 LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~-ti~~~DrIlVl~~G~ivE~g~p~~Ll~~ 1440 (1467)
|||||..+|+.++||||.|++|+-+-..||+.|+... +|--|++.-|... |+.-|||.+++.+|+|...|+|+|+.+.
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999999999998754 4667888889875 5556999999999999999999999973
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=300.22 Aligned_cols=198 Identities=25% Similarity=0.415 Sum_probs=175.3
Q ss_pred EeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCccc
Q 000481 1224 RYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF 1303 (1467)
Q Consensus 1224 ~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF 1303 (1467)
+|.....++|+|+||++++||.++|.||||||||||++.+.-+..|++|.+++.|.|+++++++.+|++++|+-|.|.||
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 56556667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHhcC-CCC----CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q 000481 1304 RGSVRTNLD-PLG----LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDE 1378 (1467)
Q Consensus 1304 ~gTIR~NLd-p~~----~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDE 1378 (1467)
.+||.+||- |+. ..+.+.-.+-|+++++.+.+- ..+..+||||||||++|+|-|---|+||+|||
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L----------~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSIL----------TKNITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhh----------cchhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 999999984 442 234455667778887766542 23346799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchh-hcccCEEEEEeCCEEEEe
Q 000481 1379 ANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPT-VIDSDMVMVLSYGKLLEY 1431 (1467)
Q Consensus 1379 aTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~t-i~~~DrIlVl~~G~ivE~ 1431 (1467)
+||+||..+.+.|.+.|.+++ ++..++.|||+-+. +..+||++-+-.|++-|.
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~~ 215 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEM 215 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccccc
Confidence 999999999999999999887 47899999999988 888999999999887543
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=341.10 Aligned_cols=203 Identities=22% Similarity=0.333 Sum_probs=170.4
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999643 24699999999999999999999999999999999999999999999877 38
Q ss_pred EEEccCCc--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 661 AYVSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 661 ~yv~Q~~~--l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+|++|+|. ++..|+++|+.++.. ... ++..++++..++.+.. ..+..+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHH
Confidence 99999985 456799999998632 222 2334455555554322 245678999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeEecChHHHHhc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||++.+|+++||||||++||+.+.+.+++.+..... .|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999998765544333 37999999999999888999999999999999999988654
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=353.39 Aligned_cols=188 Identities=33% Similarity=0.474 Sum_probs=162.3
Q ss_pred CCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------------eEEEEccCCc
Q 000481 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------------SIAYVSQTSW 668 (1467)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------------~i~yv~Q~~~ 668 (1467)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 4689999999999999999999999999999999999999999999876 3999999999
Q ss_pred CCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCE
Q 000481 669 IQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740 (1467)
Q Consensus 669 l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~i 740 (1467)
+++ .|++||+.++.. .+ +++..++++..+|.+..+ ....+|||||||||+|||||+.+|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~-----------~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD-----------KKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 886 699999998742 22 234455666666654433 34568999999999999999999999
Q ss_pred EEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHhc
Q 000481 741 YLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 741 llLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
+|||||||+||+.+.+.+.+.+..... .++|+|+|||+++++. .||+|++|++|++++.|+++++...
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999999876665444 3899999999999975 5999999999999999999999765
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=334.20 Aligned_cols=200 Identities=23% Similarity=0.343 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4889999999963 4699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCC-CCHHH----HHHHHHHh-cchHHHhcCCCCCCccccCCCCccChHHHHHHHHHH
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKP-MDKAR----YDKAIKAC-ALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~-~~~~~----~~~~~~~~-~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lAR 732 (1467)
++|++|++.++. .|++||+.++.. .+.++ ..++++.. .+.+. ...+..+||||||||++|||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHER-----------RIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHH-----------HhCchhhCCHHHHHHHHHHH
Confidence 899999998877 599999998643 12222 22222222 12111 12456789999999999999
Q ss_pred HHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 733 al~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
|++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999999877555444468999999999998765 89999999999999999998864
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=355.04 Aligned_cols=222 Identities=20% Similarity=0.400 Sum_probs=186.5
Q ss_pred eEEEEEEEEEeCCCCC--cceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCC----cceEEECCeeCCCCCHHH
Q 000481 1215 RIELRQLKIRYRPNAP--LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA----GGSILIDGVDICSMGLKD 1288 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~--~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~----~G~I~IDG~dI~~i~l~~ 1288 (1467)
-++++|++..|..... .+++||||+|++||.+||||.|||||||++++|.|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6999999999964432 4999999999999999999999999999999999999887 899999999999999876
Q ss_pred Hh----hccEEeccCCc-cccc--chHHhcC----CC----CCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCC
Q 000481 1289 LR----VKLSIIPQEPT-LFRG--SVRTNLD----PL----GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENW 1353 (1467)
Q Consensus 1289 LR----~~i~iIpQdp~-LF~g--TIR~NLd----p~----~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nL 1353 (1467)
+| ++|++|||||. .++- ||.+-+. -. .+...++..+.|+++++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 54 67999999995 4543 5544442 11 11124567788889988665443 1123468
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEE
Q 000481 1354 SAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430 (1467)
Q Consensus 1354 S~GQrQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE 1430 (1467)
|||||||+.||+||..+|++||+||||.+||..|.+.|.+.|++.. .|.++|+|||++..+.+ ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999765 58899999999999987 99999999999999
Q ss_pred ecChhHHhc-cCChhH
Q 000481 1431 YDEPSKLME-TNSSFS 1445 (1467)
Q Consensus 1431 ~g~p~~Ll~-~~~~f~ 1445 (1467)
.|+++++++ +.-.|-
T Consensus 236 ~G~~~~i~~~p~hpYT 251 (539)
T COG1123 236 TGPTEEILSNPQHPYT 251 (539)
T ss_pred ecCHHHHHhccCCccc
Confidence 999999998 444443
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=338.54 Aligned_cols=199 Identities=27% Similarity=0.415 Sum_probs=169.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
++++|++++|+. .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 4699999999999999999999999999999999999999999999876 389
Q ss_pred EEccCCcCCCC-CHHHHHhcCCC-----C------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 662 YVSQTSWIQSG-SIRDNILYGKP-----M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 662 yv~Q~~~l~~~-ti~eNi~~g~~-----~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
|++|++.++.. |+.||+.++.. + +.++..++++.+++.+..+ .....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHH
Confidence 99999887765 99999998631 1 1234455666666654333 456789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999998876554444458999999999999875 89999999999999999988764
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=387.08 Aligned_cols=209 Identities=24% Similarity=0.278 Sum_probs=148.9
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHH---------HHhcccCCCc----c----eEEEC
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLIS---------ALFRLVEPAG----G----SILID 1277 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~---------~L~rl~~~~~----G----~I~ID 1277 (1467)
.++++|++. .+|+|+|++|++||.+||+|++|||||||++ .|.+...+.. + -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 588888762 2799999999999999999999999999999 4444322211 1 24666
Q ss_pred CeeCCCCC----H------HHHhh---------ccE-----EeccC------------------C---------------
Q 000481 1278 GVDICSMG----L------KDLRV---------KLS-----IIPQE------------------P--------------- 1300 (1467)
Q Consensus 1278 G~dI~~i~----l------~~LR~---------~i~-----iIpQd------------------p--------------- 1300 (1467)
-.+|..-+ . +++|+ +.+ +.+|. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 65554321 1 14551 111 12221 1
Q ss_pred -----ccccc-chHHhcCCCCC------CCHHHHHH---HHHHcCCchHHhhCCCCcccc-cccCCCCCChhHHHHHHHH
Q 000481 1301 -----TLFRG-SVRTNLDPLGL------YSDDEIWK---ALEKCQLKTTISSLPNKLDSS-VSDEGENWSAGQRQLFCLG 1364 (1467)
Q Consensus 1301 -----~LF~g-TIR~NLdp~~~------~sd~ei~~---aL~~~~l~~~i~~lp~gLdt~-v~e~G~nLS~GQrQrl~LA 1364 (1467)
+.+.+ ||.|||+.... .+.+++.+ +|+.+ ||+.. .+....+||||||||++||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~v-----------GL~~l~l~q~~~tLSGGE~QRV~LA 821 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSL-----------GLDYLPLGRPLSSLSGGEIQRLKLA 821 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHc-----------CCcchhhcCccccCCHHHHHHHHHH
Confidence 13333 67777753210 01223333 23333 34332 4555668999999999999
Q ss_pred HHhc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcccCEEEEEe------CCEEEEecCh
Q 000481 1365 RVLL---KRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVIDSDMVMVLS------YGKLLEYDEP 1434 (1467)
Q Consensus 1365 RAlL---r~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVl~------~G~ivE~g~p 1434 (1467)
|||+ ++|++|||||||++||..+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++|+ +|++++.|+|
T Consensus 822 raL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 822 YELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred HHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 9998 5999999999999999999999999998753 4789999999999998899999996 7999999999
Q ss_pred hHHhccC
Q 000481 1435 SKLMETN 1441 (1467)
Q Consensus 1435 ~~Ll~~~ 1441 (1467)
+++.+..
T Consensus 902 eel~~~~ 908 (1809)
T PRK00635 902 EELIHLH 908 (1809)
T ss_pred HHHHhcc
Confidence 9998743
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=334.47 Aligned_cols=198 Identities=29% Similarity=0.478 Sum_probs=165.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------eE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------SI 660 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i 660 (1467)
++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999963 4699999999999999999999999999999999999999999998875 38
Q ss_pred EEEccCCcCCCC-CHHHHHhcCCCC---C-HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 661 AYVSQTSWIQSG-SIRDNILYGKPM---D-KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 661 ~yv~Q~~~l~~~-ti~eNi~~g~~~---~-~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
+|++|++.++.. |++||+.++... . .+.+.++++..+. +. ....++..+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~---l~-------~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV---LK-------EMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh---HH-------HHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999988765 999999876321 1 2233444444331 11 1123567789999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
.+|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|+++++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999998765544433 37999999999999886 899999999999999999886
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=340.44 Aligned_cols=206 Identities=23% Similarity=0.381 Sum_probs=172.4
Q ss_pred CCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC-------
Q 000481 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG------- 658 (1467)
Q Consensus 591 ~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g------- 658 (1467)
.+..|+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 16 ~~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 3457999999999963 4699999999999999999999999999999999999975 899998766
Q ss_pred --------eEEEEccCCcCCCCCHHHHHhcCCC---C--C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccC
Q 000481 659 --------SIAYVSQTSWIQSGSIRDNILYGKP---M--D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721 (1467)
Q Consensus 659 --------~i~yv~Q~~~l~~~ti~eNi~~g~~---~--~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LS 721 (1467)
.++|++|++.+++.|++||+.++.. . . .+++.++++.+++.+.+. +..++.+.+||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 3899999999888899999997531 1 1 233455666666644322 12245678999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 722 GGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+ ....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L-~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELI-DELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHH-HHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999887644 444457899999999999865 8999999999999999
Q ss_pred ChHHHHh
Q 000481 801 NYQELLL 807 (1467)
Q Consensus 801 ~~~~l~~ 807 (1467)
+.+++..
T Consensus 245 ~~~~~~~ 251 (267)
T PRK14235 245 DTEKMFT 251 (267)
T ss_pred CHHHHHh
Confidence 9988764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=339.27 Aligned_cols=201 Identities=27% Similarity=0.433 Sum_probs=167.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
.++++|++++|+. .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3789999999963 4699999999999999999999999999999999999999999997654
Q ss_pred ------eEEEEccCCcCCC-CCHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChH
Q 000481 659 ------SIAYVSQTSWIQS-GSIRDNILYGK----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~-~ti~eNi~~g~----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 723 (1467)
.++|++|++.++. .|++||+.++. ..+. ++..+.++..++... ....+.+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChH
Confidence 3899999998775 69999998742 1222 223334444444321 23567899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecCh
Q 000481 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1467)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~ 802 (1467)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+.
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999876544444458999999999999875 899999999999999999
Q ss_pred HHHHhc
Q 000481 803 QELLLA 808 (1467)
Q Consensus 803 ~~l~~~ 808 (1467)
+++.+.
T Consensus 229 ~~~~~~ 234 (250)
T PRK11264 229 KALFAD 234 (250)
T ss_pred HHHhcC
Confidence 887643
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=348.44 Aligned_cols=207 Identities=24% Similarity=0.375 Sum_probs=171.4
Q ss_pred CcEEEEeEEEEeCCCC----------CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----
Q 000481 593 RSVKIQEGNFSWDPEL----------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~----------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---- 658 (1467)
.-++++|++++|+.+. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 4589999999996321 24689999999999999999999999999999999999999999998865
Q ss_pred ------------eEEEEccCCc--CC-CCCHHHHHhcCC-----CCCH----HHHHHHHHHhcchHHHhcCCCCCCcccc
Q 000481 659 ------------SIAYVSQTSW--IQ-SGSIRDNILYGK-----PMDK----ARYDKAIKACALDKDINNFDHGDLTEIG 714 (1467)
Q Consensus 659 ------------~i~yv~Q~~~--l~-~~ti~eNi~~g~-----~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig 714 (1467)
+|+||+|+|. ++ ..||.|||.++. ..+. ++..+.++.+++.++. ..
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~----------~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL----------IN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------hc
Confidence 4999999983 44 579999997531 2332 2334555555553221 23
Q ss_pred CCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEe
Q 000481 715 QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLE 792 (1467)
Q Consensus 715 ~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~ 792 (1467)
....+|||||||||+||||++.+|+++|+||||++||+.+...+.+.+..... .|.|+|+|||+++.+.. ||+|++|+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 45679999999999999999999999999999999999999998875544433 38999999999999976 99999999
Q ss_pred CCeEeEecChHHHHhcC
Q 000481 793 GGQITQSGNYQELLLAG 809 (1467)
Q Consensus 793 ~G~i~~~G~~~~l~~~~ 809 (1467)
+|+|++.|+.+++....
T Consensus 237 ~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 237 LGHAVELGTYDEVYHNP 253 (331)
T ss_pred CCEEEEEcCHHHHHcCC
Confidence 99999999999998653
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=340.93 Aligned_cols=202 Identities=26% Similarity=0.411 Sum_probs=171.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 660 (1467)
.++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3599999999999999999999999999999999999999999999876 38
Q ss_pred EEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHH
Q 000481 661 AYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLA 731 (1467)
Q Consensus 661 ~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lA 731 (1467)
+||+|++ .+++.|++||+.++.. .+. +++++.++.+++.+.+. .....||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-----------RVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHHHHH
Confidence 9999997 3677899999987532 333 23556666666665443 34568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHhc
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 732 Ral~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 999999999999999999999999988765544433 3899999999999986 5899999999999999999998754
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=355.34 Aligned_cols=188 Identities=27% Similarity=0.414 Sum_probs=161.4
Q ss_pred CcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------------eEEEEccCCcCCC-C
Q 000481 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWIQS-G 672 (1467)
Q Consensus 611 ~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------------~i~yv~Q~~~l~~-~ 672 (1467)
++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| .++||+|++.++. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 479999999999999999999999999999999999999999998865 4899999998875 5
Q ss_pred CHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeC
Q 000481 673 SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1467)
Q Consensus 673 ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDe 745 (1467)
|++||+.++.. .+ .++..++++.+++.+..+ ....+||||||||++||||++.+|+++||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~-----------~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH-----------SYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998632 22 234556666666654443 3456899999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcC
Q 000481 746 PFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 746 p~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence 9999999999998776554433 48999999999998765 8999999999999999999987653
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=332.89 Aligned_cols=198 Identities=24% Similarity=0.341 Sum_probs=165.5
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 659 (1467)
..|+++|+++.|+. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 6 ~~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 35899999999963 4699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEccCCcCCCCCHHHHHhcCCC-----CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 660 IAYVSQTSWIQSGSIRDNILYGKP-----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 660 i~yv~Q~~~l~~~ti~eNi~~g~~-----~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
++|++|++.+++.|++||+.++.. .++++..+.++.+++.+ +.....+.+||||||||++||||+
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHH
Confidence 899999999998899999987421 12233445555555532 122456789999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEe-CCeEeEecChH
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLE-GGQITQSGNYQ 803 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~-~G~i~~~G~~~ 803 (1467)
+++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999888765444333 4889999999999998899999994 67777888875
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=342.00 Aligned_cols=201 Identities=26% Similarity=0.452 Sum_probs=169.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------e
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------~ 659 (1467)
++++|++++|+. ..++++|+||+|++||+++|+|+||||||||+++|+|.++|.+|+|.++| .
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 24699999999999999999999999999999999999999999998876 2
Q ss_pred EEEEccCC--cCCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 660 IAYVSQTS--WIQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 660 i~yv~Q~~--~l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
|+|++|++ .+++.|++|||.++.. ... ++..++++.+++....+ ....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHHHHHHH
Confidence 89999997 5678899999987631 222 33455666666543222 3467899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999876555444458999999999999875 999999999999999999988653
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=339.45 Aligned_cols=206 Identities=25% Similarity=0.368 Sum_probs=168.8
Q ss_pred cEEEEeEEEEeCCC------CCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------
Q 000481 594 SVKIQEGNFSWDPE------LAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~------~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------- 658 (1467)
.++++|++|+|+.. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999632 135799999999999999999999999999999999999999999998876
Q ss_pred -------eEEEEccCCc--CC-CCCHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCcc
Q 000481 659 -------SIAYVSQTSW--IQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720 (1467)
Q Consensus 659 -------~i~yv~Q~~~--l~-~~ti~eNi~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~L 720 (1467)
.|+|++|++. ++ ..|++||+.++. .++ +++..++++..++... ....++.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE----------DADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh----------hhhCChhhC
Confidence 3999999973 33 479999997532 122 2234445555554321 123567799
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeE
Q 000481 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1467)
Q Consensus 721 SGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1467)
|||||||++||||++++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999988765544433 38999999999999975 89999999999999
Q ss_pred ecChHHHHhcC
Q 000481 799 SGNYQELLLAG 809 (1467)
Q Consensus 799 ~G~~~~l~~~~ 809 (1467)
.|+++++....
T Consensus 232 ~g~~~~~~~~~ 242 (265)
T TIGR02769 232 ECDVAQLLSFK 242 (265)
T ss_pred ECCHHHHcCCC
Confidence 99999987643
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=329.65 Aligned_cols=190 Identities=26% Similarity=0.402 Sum_probs=161.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~y 662 (1467)
|+++|++|.|+. .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 478999999963 36999999999999 9999999999999999999999999999999876 3899
Q ss_pred EccCCcCCCC-CHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~~~-ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
++|++.++.. |++||+.+... .+ +++.+++++.+++.+..+ ....+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHH
Confidence 9999988765 99999987421 11 234556677777754433 34568999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
+++|+++||||||++||+.+.+.+.+.+. ...+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLS-ELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHH-HHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999876544 43346999999999999875 8999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=338.20 Aligned_cols=200 Identities=21% Similarity=0.340 Sum_probs=167.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.++++|+++.|+. .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 5899999999963 4799999999999999999999999999999999999999999999876 2
Q ss_pred EEEEccCCcCCCC-CHHHHHhcCCC----------------CC------HHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000481 660 IAYVSQTSWIQSG-SIRDNILYGKP----------------MD------KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1467)
Q Consensus 660 i~yv~Q~~~l~~~-ti~eNi~~g~~----------------~~------~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~ 716 (1467)
++|++|++.++.. |++||+.++.. .. .+++.+.++..++. .....+
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-----------EHANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-----------hhhhCC
Confidence 7899999988874 99999998631 00 01222333333332 223467
Q ss_pred CCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-CCEEEEEeCC
Q 000481 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGG 794 (1467)
Q Consensus 717 g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1467)
..+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+ |+|+|++||+++.+.. ||++++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 7899999999999999999999999999999999999999987655544444 7899999999999866 8999999999
Q ss_pred eEeEecChHHHHh
Q 000481 795 QITQSGNYQELLL 807 (1467)
Q Consensus 795 ~i~~~G~~~~l~~ 807 (1467)
++++.|+.+++..
T Consensus 231 ~i~~~~~~~~~~~ 243 (255)
T PRK11300 231 TPLANGTPEEIRN 243 (255)
T ss_pred eEEecCCHHHHhh
Confidence 9999999888754
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=340.79 Aligned_cols=200 Identities=26% Similarity=0.370 Sum_probs=168.1
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------e
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------S 659 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------~ 659 (1467)
++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 4699999999999999999999999999999999999999999998765 3
Q ss_pred EEEEccCCc--CCCCCHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 660 IAYVSQTSW--IQSGSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 660 i~yv~Q~~~--l~~~ti~eNi~~g~---~~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
++|++|++. ++..|+.||+.++. ..+. +++.++++..++....+ ....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 899999985 56678999998752 1222 23344555555543322 3567899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
|||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+.. ||++++|++|++++.|+.+++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999876555444468999999999999865 999999999999999999887654
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=337.36 Aligned_cols=206 Identities=23% Similarity=0.342 Sum_probs=175.5
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++ .+|+|+||+|++||.+||+|++|||||||+++|.|+++ .+|+|.+||.++...+...+|+.++|
T Consensus 1 ~~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 1 MQLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred Ccccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 356778775 27999999999999999999999999999999999986 49999999999998888888889999
Q ss_pred eccCCc-ccccchHHhcCCCCC--CC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhc
Q 000481 1296 IPQEPT-LFRGSVRTNLDPLGL--YS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLL 1368 (1467)
Q Consensus 1296 IpQdp~-LF~gTIR~NLdp~~~--~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlL 1368 (1467)
+||+|. .+..|+++|+..... .+ ++++.++++..++.+.... ....||+|||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR-----------SVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHh
Confidence 999985 456799999963211 11 2356677887777544322 23579999999999999999
Q ss_pred c-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1369 K-------RNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1369 r-------~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+ +|++|||||||++||+.+.+.+.+.|++.. +++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 7 679999999999999999999999998764 47899999999998755 99999999999999999999865
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=328.64 Aligned_cols=190 Identities=29% Similarity=0.447 Sum_probs=161.2
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~yv 663 (1467)
|+++|++++|+. .. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 478999999963 22 399999999999999999999999999999999999999999887 38999
Q ss_pred ccCCcCCCC-CHHHHHhcCCC--C-----CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 664 SQTSWIQSG-SIRDNILYGKP--M-----DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 664 ~Q~~~l~~~-ti~eNi~~g~~--~-----~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
+|++.++.. |++||+.++.. . ++++..++++.+++.+.... ...+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR-----------LPGELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHHHHh
Confidence 999998864 99999987642 1 23356667777777655543 34589999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEec
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSG 800 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G 800 (1467)
.+|+++||||||++||+++.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999998765544333 48999999999999876 8999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=339.28 Aligned_cols=205 Identities=22% Similarity=0.365 Sum_probs=170.4
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g--------- 658 (1467)
..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 469999999999999999999999999999999999987 6899998765
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCCC---C---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~~---~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.++|++|++.++..|++||+.++... . +++..++++.+++...++ .....+..+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHHH
Confidence 38999999998888999999986432 1 233444555555432222 2234567899999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeC-----------C
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEG-----------G 794 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~-----------G 794 (1467)
|++||||++.+|+++||||||++||+.+.+.+.+.+ ....+++|+|++||+++.+.. ||++++|++ |
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETM-HELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 999999999999999999999999999999987644 444457899999999998865 899999996 6
Q ss_pred eEeEecChHHHHhc
Q 000481 795 QITQSGNYQELLLA 808 (1467)
Q Consensus 795 ~i~~~G~~~~l~~~ 808 (1467)
++++.|+.+++.+.
T Consensus 241 ~~~~~~~~~~~~~~ 254 (269)
T PRK14259 241 YLVEFNETKKIFNS 254 (269)
T ss_pred eEEEeCCHHHHHhC
Confidence 78999999988654
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=331.41 Aligned_cols=189 Identities=26% Similarity=0.409 Sum_probs=159.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
++++|++++|+.+ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999632 4699999999999999999999999999999999999999999998865
Q ss_pred eEEEEccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 659 SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
.++|++|++.++. .|++||+.++.. .+ +++..+.++.+++.+..+ ....+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-----------ALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHH
Confidence 3899999998876 599999987532 12 234555666666654433 3446899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeE
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i 796 (1467)
|||++.+|+++||||||++||+++.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999876555444468999999999999886 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=334.85 Aligned_cols=200 Identities=21% Similarity=0.377 Sum_probs=167.1
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
.++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 4789999999963 4699999999999999999999999999999999999999999998876 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
++|++|++.++. .|++||+.++.. .+. +++.+.++..++.. ....+..+||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-----------LRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-----------HhhcchhhCCHHHHHHHHH
Confidence 899999998776 599999987532 122 22333444433322 2345678999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
|||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999998876444333468999999999988765 89999999999999999988764
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=336.12 Aligned_cols=199 Identities=29% Similarity=0.389 Sum_probs=169.3
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999963 4699999999999999999999999999999999999999999999876 289
Q ss_pred EEccCCcC-CCCCHHHHHhcCCC-C------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 662 YVSQTSWI-QSGSIRDNILYGKP-M------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 662 yv~Q~~~l-~~~ti~eNi~~g~~-~------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
|++|++.+ ++.|++||+.++.. . .+++.+++++..++....+ ....+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 99999877 67799999988632 1 1234455666666654332 4567999999999999999
Q ss_pred Hh------cCCCEEEEeCCCCccCHHHHHHHHHHHHHHh-cCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 734 VY------NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 734 l~------~~~~illLDep~salD~~~~~~i~~~~~~~~-~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
++ .+|+++||||||++||+.+.+.+.+.+.... .+|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999998876554443 458999999999999874 999999999999999999887
Q ss_pred Hh
Q 000481 806 LL 807 (1467)
Q Consensus 806 ~~ 807 (1467)
..
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 64
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=337.73 Aligned_cols=211 Identities=19% Similarity=0.281 Sum_probs=169.1
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhccc--CCCcceEEECCeeCCCCCHHHHh-hc
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV--EPAGGSILIDGVDICSMGLKDLR-VK 1292 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~--~~~~G~I~IDG~dI~~i~l~~LR-~~ 1292 (1467)
|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999963 35999999999999999999999999999999999995 69999999999999888776654 57
Q ss_pred cEEeccCCccccc-chHHhc-------CCCCC---CC----HHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhH
Q 000481 1293 LSIIPQEPTLFRG-SVRTNL-------DPLGL---YS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQ 1357 (1467)
Q Consensus 1293 i~iIpQdp~LF~g-TIR~NL-------dp~~~---~s----d~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQ 1357 (1467)
++++||+|.++.. |..+++ ..+.. .. ++.+.+.++..++ |+++.+... ..+|||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~--~~~LS~G~ 150 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM-------PEDLLTRSV--NVGFSGGE 150 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCC-------ChhhcccCC--CCCCCHHH
Confidence 9999999987764 433332 21110 01 1122233443333 322222111 13699999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CcEEEEEccCchhhcc--cCEEEEEeCCEEEEecCh
Q 000481 1358 RQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFS-NCTVITVAHRVPTVID--SDMVMVLSYGKLLEYDEP 1434 (1467)
Q Consensus 1358 rQrl~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~-~~TvI~IAHRl~ti~~--~DrIlVl~~G~ivE~g~p 1434 (1467)
|||++||||++++|+||||||||++||.++.+.+.+.|++..+ ++|||+|+|+++.+.. ||+|++|++|++++.|++
T Consensus 151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~ 230 (248)
T PRK09580 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999887543 6899999999999987 899999999999999998
Q ss_pred hHH
Q 000481 1435 SKL 1437 (1467)
Q Consensus 1435 ~~L 1437 (1467)
++.
T Consensus 231 ~~~ 233 (248)
T PRK09580 231 TLV 233 (248)
T ss_pred HHH
Confidence 855
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=339.40 Aligned_cols=201 Identities=24% Similarity=0.346 Sum_probs=170.5
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~ 659 (1467)
..++++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 10 ~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 10 TTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred ceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 46899999999963 4699999999999999999999999999999999999999999999877 3
Q ss_pred EEEEccCCcCC-CCCHHHHHhcCCC--------C---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 660 IAYVSQTSWIQ-SGSIRDNILYGKP--------M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 660 i~yv~Q~~~l~-~~ti~eNi~~g~~--------~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
++|++|++-++ ..|+.||+.++.. . .+++..++++.+++.+.++ ....+||||||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qr 155 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-----------RLVDSLSGGERQR 155 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCCHHHHHH
Confidence 89999997654 4599999997631 1 1234566777777755443 3445899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHH
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQEL 805 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l 805 (1467)
++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999999999999999999999999988765544333 38999999999999865 899999999999999999887
Q ss_pred Hh
Q 000481 806 LL 807 (1467)
Q Consensus 806 ~~ 807 (1467)
..
T Consensus 236 ~~ 237 (265)
T PRK10575 236 MR 237 (265)
T ss_pred cC
Confidence 64
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=319.29 Aligned_cols=166 Identities=34% Similarity=0.593 Sum_probs=151.1
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------EEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------IAY 662 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~------------i~y 662 (1467)
++++|++++|+.. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4789999999643 246999999999999999999999999999999999999999999998872 899
Q ss_pred EccCCcCCCCCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEE
Q 000481 663 VSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYL 742 (1467)
Q Consensus 663 v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~ill 742 (1467)
++|++++++.|++||+ +.+||||||||++||||++.+|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 45899999999999999999999999
Q ss_pred EeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCeEeEec
Q 000481 743 FDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800 (1467)
Q Consensus 743 LDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~G 800 (1467)
|||||++||+++.+.+++.+.+. .+++|+|++||+++.++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999887655443 4689999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=332.37 Aligned_cols=195 Identities=28% Similarity=0.380 Sum_probs=164.2
Q ss_pred cEEEEeEEEEeCCCCC-CCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 000481 594 SVKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------- 658 (1467)
.++++|++++|+.+.. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999974321 3599999999999999999999999999999999999999999998765
Q ss_pred ---eEEEEccCCcCCC-CCHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 659 ---SIAYVSQTSWIQS-GSIRDNILYGK---PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 659 ---~i~yv~Q~~~l~~-~ti~eNi~~g~---~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
.++|++|++.++. .|++||+.++. ..+ ++++.+.++.+++.+.++ ....+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHH
Confidence 3899999998876 59999998642 111 235566677777765444 3446899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhcCCEEEEEeCCeEeEe
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQS 799 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~~d~i~~l~~G~i~~~ 799 (1467)
++||||++.+|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999988765554433 37899999999999888999999999999753
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=331.36 Aligned_cols=188 Identities=23% Similarity=0.421 Sum_probs=159.7
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
++++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 24699999999999999999999999999999999999999999998765
Q ss_pred eEEEEccCCcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 659 SIAYVSQTSWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
.++|++|++.++. .|++||+.++.. .+ ++++++.++..++.+.+. ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-----------AFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHHHH
Confidence 3899999998875 699999987521 22 235566666666655443 2346899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCe
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1467)
|||++.+|+++||||||++||+.+...+.+.+.....+++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999877555444468999999999999886 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=335.24 Aligned_cols=199 Identities=22% Similarity=0.355 Sum_probs=167.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
-++++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 3789999999963 4699999999999999999999999999999999999999999998876 2
Q ss_pred EEEEccCCcCCCC-CHHHHHhcCCCC---------------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChH
Q 000481 660 IAYVSQTSWIQSG-SIRDNILYGKPM---------------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1467)
Q Consensus 660 i~yv~Q~~~l~~~-ti~eNi~~g~~~---------------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 723 (1467)
++|++|++.++.. |++||+.++... ++++..+.++..++.+ .......+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHH
Confidence 8999999988875 999999885321 1122333344333322 234567799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecCh
Q 000481 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1467)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~ 802 (1467)
||||++||||++.+|+++||||||++||+.+.+.+.+.+ ....+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l-~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL-KSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHH-HHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCH
Confidence 999999999999999999999999999999999987644 444457899999999999875 999999999999999999
Q ss_pred HHHHh
Q 000481 803 QELLL 807 (1467)
Q Consensus 803 ~~l~~ 807 (1467)
+++..
T Consensus 227 ~~~~~ 231 (242)
T TIGR03411 227 DQVQA 231 (242)
T ss_pred HHHhc
Confidence 88754
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=338.12 Aligned_cols=204 Identities=25% Similarity=0.427 Sum_probs=169.8
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCC---CCC--CCcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE---IPK--ISGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~---~~~--~~G~i~~~g---------- 658 (1467)
.++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+ ++| ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5889999999963 4699999999999999999999999999999999996 454 589998765
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKP----MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~----~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|+||++.+++.|++||+.++.. .+ +++..++++.+++.+++. +...+.+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 3899999999888899999987532 11 123445556565543332 223467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+ ..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE-LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH-HhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999998765544 3567999999999999865 89999999999999999999
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14245 232 IFTN 235 (250)
T ss_pred HhcC
Confidence 8653
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=330.09 Aligned_cols=188 Identities=31% Similarity=0.497 Sum_probs=157.7
Q ss_pred EEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEEE
Q 000481 596 KIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIAY 662 (1467)
Q Consensus 596 ~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~y 662 (1467)
+++|++++|+.. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999642 24699999999999999999999999999999999999999999999876 3899
Q ss_pred EccCCc--CCCCCHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 663 VSQTSW--IQSGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 663 v~Q~~~--l~~~ti~eNi~~g~~---~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
++|++. +++.|++||+.++.. .+. ++..+.++..++.+.++ .+..+||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHH
Confidence 999983 567899999987532 222 23445566666654333 4557899999999999999
Q ss_pred HhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCe
Q 000481 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQ 795 (1467)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~ 795 (1467)
++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999887655444458999999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=338.82 Aligned_cols=207 Identities=24% Similarity=0.365 Sum_probs=173.8
Q ss_pred CCCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC-------
Q 000481 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG------- 658 (1467)
Q Consensus 591 ~~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g------- 658 (1467)
....|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 17 ~~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 17 EEIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred CCeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 3457999999999953 579999999999999999999999999999999999996 5899998765
Q ss_pred --------eEEEEccCCcCCCCCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccCh
Q 000481 659 --------SIAYVSQTSWIQSGSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722 (1467)
Q Consensus 659 --------~i~yv~Q~~~l~~~ti~eNi~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSG 722 (1467)
.++|++|++.++..|++|||.++.. .++ +++.++++.+++.+++. +..++.+.+|||
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~ 166 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSG 166 (267)
T ss_pred CChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCH
Confidence 3899999999988999999998632 122 33455566666644332 234567889999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecC
Q 000481 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGN 801 (1467)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~ 801 (1467)
|||||++||||++++|+++||||||++||+.+.+.+.+.+. ...+++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 167 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 245 (267)
T PRK14237 167 GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMF-ELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDK 245 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999998876544 44457899999999999865 99999999999999999
Q ss_pred hHHHHhc
Q 000481 802 YQELLLA 808 (1467)
Q Consensus 802 ~~~l~~~ 808 (1467)
.+++...
T Consensus 246 ~~~~~~~ 252 (267)
T PRK14237 246 TRNIFTN 252 (267)
T ss_pred HHHHhcC
Confidence 9988653
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=337.78 Aligned_cols=205 Identities=27% Similarity=0.421 Sum_probs=169.6
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC--C---CCcEEEEcC---------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP--K---ISGTVNLYG--------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~--~---~~G~i~~~g--------- 658 (1467)
..++++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|
T Consensus 11 ~~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 11 EVYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred ceEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 35899999999963 469999999999999999999999999999999999987 3 589998765
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCC----CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKP----MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~----~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 724 (1467)
.++|++|++.+++.|++||+.++.. .+++ +..++++..++.+.+. ......+.+|||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq 160 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQ 160 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHH
Confidence 3899999999988899999988632 1222 2334455555543221 12346778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChH
Q 000481 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 803 (1467)
|||++||||++.+|+++||||||++||+++...+.+. +....+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEEL-ILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999988654 4444457899999999999875 8999999999999999999
Q ss_pred HHHhc
Q 000481 804 ELLLA 808 (1467)
Q Consensus 804 ~l~~~ 808 (1467)
++...
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 88653
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=338.55 Aligned_cols=205 Identities=26% Similarity=0.382 Sum_probs=170.0
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC---------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG--------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g--------- 658 (1467)
..++++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 36999999999963 4699999999999999999999999999999999999975 799998755
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|++|++.+++.|++||+.++.. .+.+ +..++++.+++..++. .....+..+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHH
Confidence 3899999999888999999998631 2222 2344555555432211 123456789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+.+...+.+.+. ...+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIM-NLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHH-HHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999876544 43457999999999999865 89999999999999999998
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+.+.
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 8643
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=325.77 Aligned_cols=192 Identities=22% Similarity=0.321 Sum_probs=147.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccE
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~ 1294 (1467)
-+-+.||+|.|+.. .|.+++++|-|.--.+|+||||+|.|||||+++|.|-++|+.|+..=+- |-+||
T Consensus 586 vLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRIG 653 (807)
T ss_pred eeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeeee
Confidence 46789999999644 5689999999999999999999999999999999999999999875443 56788
Q ss_pred EeccCCc--c-cccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCC
Q 000481 1295 IIPQEPT--L-FRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371 (1467)
Q Consensus 1295 iIpQdp~--L-F~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~ 1371 (1467)
..-|..- | -..|--+.|.-.-...-++-..+|...||....... .-..||||||-|++||-.-|+.|
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTi----------kikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTI----------KIKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceE----------eeeecCCcchHHHHHHHHhcCCC
Confidence 8887542 1 122433333211123456667788777775542211 12359999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCcEEEEEccCchhhcccCE-EEEEeCCEEEE
Q 000481 1372 RILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDM-VMVLSYGKLLE 1430 (1467)
Q Consensus 1372 ~ILiLDEaTs~lD~~Te~~Iq~~i~~~~~~~TvI~IAHRl~ti~~~Dr-IlVl~~G~ivE 1430 (1467)
+||||||||.+||.++-..+-++|+++ +..||+|+|+-..|...|. .+|+++-.|-|
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~e 781 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDE 781 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhh
Confidence 999999999999999999999999876 4469999999888865443 45666554544
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=334.28 Aligned_cols=199 Identities=28% Similarity=0.391 Sum_probs=166.0
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
.++++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999963 4699999999999999999999999999999999999999999998865
Q ss_pred ----eEEEEccCCcCCC-CCHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 ----SIAYVSQTSWIQS-GSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 ----~i~yv~Q~~~l~~-~ti~eNi~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|+||++.++. .|++|||.++. ... .++..+.++..++...+ .....+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYA-----------DRFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHH
Confidence 3899999998876 59999997421 111 12334444555544333 345678999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999876544433458999999999999875 89999999999999999887
Q ss_pred HH
Q 000481 805 LL 806 (1467)
Q Consensus 805 l~ 806 (1467)
+.
T Consensus 228 ~~ 229 (242)
T PRK11124 228 FT 229 (242)
T ss_pred hc
Confidence 64
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=306.51 Aligned_cols=201 Identities=25% Similarity=0.342 Sum_probs=172.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAY 662 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~y 662 (1467)
+++.+++.+|++ ...+++|+||++++||+++|.|+|||||||+|+.|.+++.|++|.|.++| +||.
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 578899999975 34589999999999999999999999999999999999999999999877 5888
Q ss_pred EccCCcCC-CCCHHHHHhcCCC-------CCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHH
Q 000481 663 VSQTSWIQ-SGSIRDNILYGKP-------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~~l~-~~ti~eNi~~g~~-------~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal 734 (1467)
++-+.-++ ..|+||||.|-.. -.+.+..+..+..++.+-++ .+..++|-||||||+||||+
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHHH
Confidence 88665554 5699999996321 12456667777777766554 46678999999999999999
Q ss_pred hcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 735 ~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
.+||++++||||||+||..+.+.+.+.+.+....|+++|+.||.++.++. ||+|+++.+|+++..|+.+++.++
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999988766555556679999999999999985 999999999999999999988754
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=370.42 Aligned_cols=216 Identities=22% Similarity=0.334 Sum_probs=148.3
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHh------cccC----C-----------Ccce
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALF------RLVE----P-----------AGGS 1273 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~------rl~~----~-----------~~G~ 1273 (1467)
.++++|++. ..|+|+||+|++||.+||+|++|||||||++-.+ ++.+ | -.--
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKV 684 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCce
Confidence 488999862 2599999999999999999999999999998333 1111 1 1123
Q ss_pred EEECCeeCCCCC----------HHHHhhccEEecc------CCccccc--------------chHHhc--CCC-------
Q 000481 1274 ILIDGVDICSMG----------LKDLRVKLSIIPQ------EPTLFRG--------------SVRTNL--DPL------- 1314 (1467)
Q Consensus 1274 I~IDG~dI~~i~----------l~~LR~~i~iIpQ------dp~LF~g--------------TIR~NL--dp~------- 1314 (1467)
|.||-.+|..-+ .+.+|..++=.|+ .|-.|+- .+.-++ +|.
T Consensus 685 v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 764 (924)
T TIGR00630 685 IHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEV 764 (924)
T ss_pred EEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCC
Confidence 677766665322 2346776666554 2344431 121111 110
Q ss_pred ---CCCCHHH---------HHHHHHHc--CCchHHhhCC-----------CCccc-ccccCCCCCChhHHHHHHHHHHhc
Q 000481 1315 ---GLYSDDE---------IWKALEKC--QLKTTISSLP-----------NKLDS-SVSDEGENWSAGQRQLFCLGRVLL 1368 (1467)
Q Consensus 1315 ---~~~sd~e---------i~~aL~~~--~l~~~i~~lp-----------~gLdt-~v~e~G~nLS~GQrQrl~LARAlL 1368 (1467)
..+.++- |-++|+.. ...+|+..++ -||+. .++.....||||||||++|||+|+
T Consensus 765 C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~ 844 (924)
T TIGR00630 765 CKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELS 844 (924)
T ss_pred cCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHh
Confidence 0112210 11111100 0011111111 14544 356777899999999999999999
Q ss_pred c---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcccCEEEEE------eCCEEEEecChhHH
Q 000481 1369 K---RNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVIDSDMVMVL------SYGKLLEYDEPSKL 1437 (1467)
Q Consensus 1369 r---~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~~DrIlVl------~~G~ivE~g~p~~L 1437 (1467)
+ +|+++||||||++||..+...+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+++
T Consensus 845 ~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 845 KRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 7 589999999999999999999999998764 478999999999999999999999 79999999999986
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=337.92 Aligned_cols=202 Identities=21% Similarity=0.304 Sum_probs=171.5
Q ss_pred CCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 000481 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 658 (1467)
...++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 5 VARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred ccEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 357999999999963 4699999999999999999999999999999999999999999999876
Q ss_pred eEEEEccCCcCC-CCCHHHHHhcCC-CC-------C---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHH
Q 000481 659 SIAYVSQTSWIQ-SGSIRDNILYGK-PM-------D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726 (1467)
Q Consensus 659 ~i~yv~Q~~~l~-~~ti~eNi~~g~-~~-------~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkq 726 (1467)
.++|++|++.++ +.|++||+.++. +. . ++++.++++..++.+... ....+|||||||
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~q 150 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQ 150 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHH
Confidence 389999998776 469999998752 11 1 234555666666654332 456799999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 727 RIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 727 Rv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
|++||||++.+|+++||||||++||+.+.+++.+.+..... .|+|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 151 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 151 RAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999998775544433 38899999999998765 89999999999999999988
Q ss_pred HHh
Q 000481 805 LLL 807 (1467)
Q Consensus 805 l~~ 807 (1467)
+..
T Consensus 231 ~~~ 233 (265)
T PRK10253 231 IVT 233 (265)
T ss_pred Hhh
Confidence 764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=335.43 Aligned_cols=204 Identities=28% Similarity=0.403 Sum_probs=169.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCC-----CcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI-----SGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~-----~G~i~~~g---------- 658 (1467)
.++++|++|+|+. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 46999999999999999999999999999999999999987 69997654
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCCC----CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~~----~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|++|++.+++.|++||+.++... .+ +++.++++..++.+.++ ......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 39999999999888999999986421 11 22333344444432222 223467889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+.+...+.+. +....+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEEL-MQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 999999999999999999999999999999988764 4444468999999999999876 79999999999999999988
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 7643
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=328.80 Aligned_cols=198 Identities=27% Similarity=0.457 Sum_probs=169.0
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------~i~yv 663 (1467)
++++|++++|+. .+ .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 689999999963 22 399999999999999999999999999999999999999999876 38999
Q ss_pred ccCCcCCC-CCHHHHHhcCCC----C---CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHh
Q 000481 664 SQTSWIQS-GSIRDNILYGKP----M---DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 664 ~Q~~~l~~-~ti~eNi~~g~~----~---~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~ 735 (1467)
+|++.++. .|++||+.++.. . ++++..++++..++.+.++. ....||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLAR-----------LPGQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhC-----------CcccCCHHHHHHHHHHHHHh
Confidence 99998876 499999987531 1 13356667777777665544 34589999999999999999
Q ss_pred cCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 736 ~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
++|+++||||||++||+.+.+.+.+.+..... .|+|+|++||+++.+.. ||+|++|++|++.+.|+++++...
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999988765544433 38899999999999876 899999999999999999988754
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=324.75 Aligned_cols=194 Identities=25% Similarity=0.310 Sum_probs=167.9
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~i 1295 (1467)
++++|++++|+. ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.... ..+|+++++
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 578999999953 35999999999999999999999999999999999999999999999999987654 567899999
Q ss_pred eccCCccc-ccchHHhcCCCC-CCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCE
Q 000481 1296 IPQEPTLF-RGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373 (1467)
Q Consensus 1296 IpQdp~LF-~gTIR~NLdp~~-~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~I 1373 (1467)
+||+|.++ ..|+++|+..+. ...++++.++++..++.+... +. ..+||+|||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-------RP----VAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-------Cc----hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999886 579999995332 346778889999999875432 22 246999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhh-cccCEEEEE
Q 000481 1374 LVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTV-IDSDMVMVL 1423 (1467)
Q Consensus 1374 LiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti-~~~DrIlVl 1423 (1467)
|||||||++||+.+.+.+.+.|++.. +++|+|+|+|+...+ ..||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998653 479999999987765 458999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=336.39 Aligned_cols=200 Identities=27% Similarity=0.420 Sum_probs=167.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999963 4699999999999999999999999999999999999999999998765
Q ss_pred ----------eEEEEccCCcCCC-CCHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCc
Q 000481 659 ----------SIAYVSQTSWIQS-GSIRDNILYGKP----MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1467)
Q Consensus 659 ----------~i~yv~Q~~~l~~-~ti~eNi~~g~~----~~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~ 719 (1467)
.++|++|++.++. .|++||+.++.. ... +++.+.++..++.+.+ .+.+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKA-----------DHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-----------hcChhh
Confidence 3899999988774 799999987521 122 2344555555554333 345678
Q ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEe
Q 000481 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1467)
Q Consensus 720 LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1467)
||||||||++||||++.+|+++||||||++||+.+...+++.+..... .|+|+|++||+++.+.. ||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999988765544433 38999999999999865 8999999999999
Q ss_pred EecChHHHHhc
Q 000481 798 QSGNYQELLLA 808 (1467)
Q Consensus 798 ~~G~~~~l~~~ 808 (1467)
+.|+++++...
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999888644
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=338.83 Aligned_cols=205 Identities=22% Similarity=0.328 Sum_probs=168.7
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g--------- 658 (1467)
..++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 20 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 45899999999963 469999999999999999999999999999999999864 6899998764
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCCC----C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKPM----D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~~----~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 724 (1467)
.++|++|++.+++.|++||+.++... . +++..++++.+++...+. ...+.++.+|||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 169 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQ 169 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHH
Confidence 38999999999989999999976321 1 122334444444432111 22346778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChH
Q 000481 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 803 (1467)
|||++||||++.+|+++||||||++||+.+.+.+.+.+ ....+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELI-TELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHH-HHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999887644 444457899999999998765 8999999999999999998
Q ss_pred HHHhc
Q 000481 804 ELLLA 808 (1467)
Q Consensus 804 ~l~~~ 808 (1467)
++...
T Consensus 249 ~~~~~ 253 (268)
T PRK14248 249 QIFTS 253 (268)
T ss_pred HHHhC
Confidence 87654
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=337.15 Aligned_cols=204 Identities=27% Similarity=0.438 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g---------- 658 (1467)
.++++|++|+|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 469999999999999999999999999999999999997 4799998765
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCC---C-CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~---~-~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|++|++.+++.|++||+.++.. . +. +++.++++.+++..+.. .....++.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhhCCHHHH
Confidence 3899999999998999999987632 1 11 23444555555532111 112356789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++++|+++||||||++||+.+.+.+.+.+. ...+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLM-ELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHH-HHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999998876544 43457899999999999876 89999999999999999988
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 8643
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=335.67 Aligned_cols=204 Identities=27% Similarity=0.385 Sum_probs=171.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g---------- 658 (1467)
-++++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4789999999963 4699999999999999999999999999999999999875 799998865
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCCC----CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~~----~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|+||++.+++.|++||+.|+... +. +++.++++.+++.+++.. ....+..+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 38999999999989999999986321 22 234556666666433322 22356789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+.+.+.+.+. +....+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDL-MVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 999999999999999999999999999999998764 4444456899999999999876 89999999999999999998
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 8654
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=336.54 Aligned_cols=199 Identities=27% Similarity=0.405 Sum_probs=168.1
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 661 (1467)
++++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++| .++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 688999999963 4699999999999999999999999999999999999999999999876 389
Q ss_pred EEccCCc-CCCCCHHHHHhcCCC-C----------CHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHH
Q 000481 662 YVSQTSW-IQSGSIRDNILYGKP-M----------DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 662 yv~Q~~~-l~~~ti~eNi~~g~~-~----------~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~ 729 (1467)
|++|++. .+..|++||+.++.. . +.++..++++.+++.+.. ...+..||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-----------DRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHH
Confidence 9999985 456799999988631 1 112345555655554322 2456789999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHh
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~ 807 (1467)
||||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999998876554444458999999999999965 99999999999999999988754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=335.00 Aligned_cols=203 Identities=29% Similarity=0.437 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g---------- 658 (1467)
.++++|++++|+. +++++|+||+|++||+++|+|+||||||||+++|+|.+++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5899999999963 4699999999999999999999999999999999998763 689998865
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|++|++.+++.|++||+.++.. . . +++..++++.+++.+++. ......+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 3899999999888999999998632 1 1 223444555555543332 123456789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+.+.+.+.+. +....+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL-IQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999988654 4444457899999999998865 89999999999999999988
Q ss_pred HHh
Q 000481 805 LLL 807 (1467)
Q Consensus 805 l~~ 807 (1467)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14240 232 LFT 234 (250)
T ss_pred HHh
Confidence 764
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=335.83 Aligned_cols=204 Identities=26% Similarity=0.406 Sum_probs=168.7
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCC--CC---CCcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PK---ISGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~--~~---~~G~i~~~g---------- 658 (1467)
.++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+. .| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 5899999999963 46999999999999999999999999999999999985 36 589998765
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCC---C-CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKP---M-DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~---~-~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|++|++.+++.|++||+.++.. . ++ ++..++++.+++...+. +..+....+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 3899999999998999999987521 1 11 22334455555433222 223467789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++.+|+++||||||++||+++.+.+++.+ ....+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l-~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETL-LGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH-HHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987644 444457899999999998765 89999999999999999998
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+...
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 8654
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=334.93 Aligned_cols=204 Identities=29% Similarity=0.381 Sum_probs=168.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g---------- 658 (1467)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4889999999963 4699999999999999999999999999999999999974 699998876
Q ss_pred ---eEEEEccCCcC-CCCCHHHHHhcCCCC-----CH----HHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 ---SIAYVSQTSWI-QSGSIRDNILYGKPM-----DK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 ---~i~yv~Q~~~l-~~~ti~eNi~~g~~~-----~~----~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.|+|++|++.+ ++.|++||+.++... .. ++..++++.+++.+.+. ........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 38999999865 467999999876321 11 23445555555533221 122356679999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||++||||++++|+++||||||++||+.+.+.+.+.+.. ..+++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~-~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLE-LKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 999999999999999999999999999999998765544 3457999999999999864 89999999999999999998
Q ss_pred HHhc
Q 000481 805 LLLA 808 (1467)
Q Consensus 805 l~~~ 808 (1467)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14247 232 VFTN 235 (250)
T ss_pred HHcC
Confidence 8643
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=312.13 Aligned_cols=159 Identities=31% Similarity=0.536 Sum_probs=147.9
Q ss_pred EEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHH-HHhhccE
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLK-DLRVKLS 1294 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~-~LR~~i~ 1294 (1467)
|+++|++++|+. .++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+||.++...+.. ..|++++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 579999999963 3599999999999999999999999999999999999999999999999999988764 4678899
Q ss_pred EeccCCcccccchHHhcCCCCCCCHHHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEE
Q 000481 1295 IIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374 (1467)
Q Consensus 1295 iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~IL 1374 (1467)
++|| ||+|||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 8999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEE
Q 000481 1375 VLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430 (1467)
Q Consensus 1375 iLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE 1430 (1467)
+|||||++||.++.+.+.+.|++.. ++.|+|+++|+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998763 47899999999998865 99999999999976
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=335.52 Aligned_cols=198 Identities=27% Similarity=0.435 Sum_probs=166.3
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCC---CcEEEEcC------------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI---SGTVNLYG------------ 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g------------ 658 (1467)
.++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4889999999963 46999999999999999999999999999999999999886 49998766
Q ss_pred ------eEEEEccCCcCCC-CCHHHHHhcCCC------------CC---HHHHHHHHHHhcchHHHhcCCCCCCccccCC
Q 000481 659 ------SIAYVSQTSWIQS-GSIRDNILYGKP------------MD---KARYDKAIKACALDKDINNFDHGDLTEIGQR 716 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~-~ti~eNi~~g~~------------~~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~ 716 (1467)
.++|+||++.++. .|++||+.++.. .. ++++.++++..++...+ ...
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-----------HQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH-----------hCC
Confidence 2799999988776 599999987631 01 22345555555554333 245
Q ss_pred CCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCC
Q 000481 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGG 794 (1467)
Q Consensus 717 g~~LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G 794 (1467)
..+||||||||++||||++.+|+++||||||++||+++.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 678999999999999999999999999999999999999998765544433 48999999999998765 8999999999
Q ss_pred eEeEecChHHH
Q 000481 795 QITQSGNYQEL 805 (1467)
Q Consensus 795 ~i~~~G~~~~l 805 (1467)
++.+.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999999986
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=342.99 Aligned_cols=200 Identities=25% Similarity=0.404 Sum_probs=170.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEE
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIA 661 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~ 661 (1467)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+|
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE
Confidence 3789999999963 4699999999999999999999999999999999999999999999877 399
Q ss_pred EEccCCcCCCC-CHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHH
Q 000481 662 YVSQTSWIQSG-SIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 662 yv~Q~~~l~~~-ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARa 733 (1467)
|+||++.++.. |++||+.+... .. .++.+++++..++.+.. ..+..+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHH
Confidence 99999988765 99999976321 12 23455555555554333 35567999999999999999
Q ss_pred HhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 734 l~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
++++|++++|||||++||+.+.+.+++.+. ...+++|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~-~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIK-NIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999999999999999876544 44457999999999999876 999999999999999999998653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=329.11 Aligned_cols=196 Identities=26% Similarity=0.398 Sum_probs=157.8
Q ss_pred EEEEeEEEEeCCCC-CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 000481 595 VKIQEGNFSWDPEL-AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~-~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------- 658 (1467)
++++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996421 12699999999999999999999999999999999999999999998865
Q ss_pred -eEEEEccCCc--CC-CCCHHHHHhcCCC-----CCHHHHH----HHHHHhcchHHHhcCCCCCCccccCCCCccChHHH
Q 000481 659 -SIAYVSQTSW--IQ-SGSIRDNILYGKP-----MDKARYD----KAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 -~i~yv~Q~~~--l~-~~ti~eNi~~g~~-----~~~~~~~----~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQk 725 (1467)
.++|++|++. ++ +.|++||+.++.. .+++..+ +.++..++.. .....+..+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 3899999983 33 5799999986421 1111111 2333333311 123456789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhh-cCCEEEEEeCCeEeEec
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLS-EVDRILVLEGGQITQSG 800 (1467)
Q Consensus 726 qRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G 800 (1467)
||++||||++.+|+++||||||++||+.+.+.+.+.+.+...+ |+|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999887655444334 899999999999987 49999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=344.97 Aligned_cols=188 Identities=23% Similarity=0.382 Sum_probs=161.4
Q ss_pred CCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEEEccCCcCCC-CCHHH
Q 000481 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SIAYVSQTSWIQS-GSIRD 676 (1467)
Q Consensus 610 ~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~yv~Q~~~l~~-~ti~e 676 (1467)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+||++.++. .|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 4699999999999999999999999999999999999999999999977 3899999998776 49999
Q ss_pred HHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCc
Q 000481 677 NILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSA 749 (1467)
Q Consensus 677 Ni~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~sa 749 (1467)
|+.+... .. .++.+++++.+++.+..+ .+..+||||||||++||||++++|+++||||||++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-----------RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-----------CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9987421 12 234556666666654332 45678999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhc
Q 000481 750 VDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 750 lD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~ 808 (1467)
||+.+.+.+++.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999887555444568999999999999875 999999999999999999988653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=328.67 Aligned_cols=196 Identities=21% Similarity=0.301 Sum_probs=168.6
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC---------eEEEEcc
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------SIAYVSQ 665 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------~i~yv~Q 665 (1467)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 468999999963 4699999999999999999999999999999999999999999999876 4899999
Q ss_pred CCcCCC-CCHHHHHhcCC---CCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEE
Q 000481 666 TSWIQS-GSIRDNILYGK---PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIY 741 (1467)
Q Consensus 666 ~~~l~~-~ti~eNi~~g~---~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~il 741 (1467)
++.++. .|++||+.++. ..++++..+.++..++.+..+ ....+||||||||++||||++.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 988765 69999998642 234566677777777765433 345689999999999999999999999
Q ss_pred EEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHH
Q 000481 742 LFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQE 804 (1467)
Q Consensus 742 lLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~ 804 (1467)
||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999998876555444468999999999999865 99999999999999998764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=312.65 Aligned_cols=162 Identities=26% Similarity=0.441 Sum_probs=146.4
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcCCCC
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQSG 672 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l~~~ 672 (1467)
|+++|++++|+.+ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++|++.+++.
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 4689999999632 4699999999999999999999999999999999999999999999987 79999999999889
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCCccCH
Q 000481 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1467)
Q Consensus 673 ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~salD~ 752 (1467)
|++||+.++ +...||||||||++||||++++|+++||||||++||+
T Consensus 79 tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 79 TLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 999999874 2468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccCcchhhcCCEEEEEeCCe
Q 000481 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQ 795 (1467)
Q Consensus 753 ~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~~d~i~~l~~G~ 795 (1467)
++.+.+.+.+ ... ++|+|++||+.+....||++++|++|.
T Consensus 125 ~~~~~l~~~l-~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 125 ESEDRLYQLL-KEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHH-HHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999887644 333 689999999998877799999998763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=322.41 Aligned_cols=188 Identities=29% Similarity=0.449 Sum_probs=164.4
Q ss_pred cccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------------eEEEEccCCcC-CCCC
Q 000481 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------------SIAYVSQTSWI-QSGS 673 (1467)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-----------------~i~yv~Q~~~l-~~~t 673 (1467)
-++|+||+|+.||+..|.|-||||||||++++.|+++|++|+|.++| ++++|+|+.-| +.-|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 57899999999999999999999999999999999999999999988 49999999665 5679
Q ss_pred HHHHHhcCCCC---C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCC
Q 000481 674 IRDNILYGKPM---D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP 746 (1467)
Q Consensus 674 i~eNi~~g~~~---~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep 746 (1467)
|.||+.||.+. + +++..+.++..+|+..-...| .+||||+||||.|||||..||||+|+|||
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----------~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-----------NELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-----------ccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 99999999753 2 345566777788877666555 48999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHhcCc
Q 000481 747 FSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAGT 810 (1467)
Q Consensus 747 ~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~~ 810 (1467)
||||||--+..+-+++++... -+||+|+|||++++.- -.|||.+|+||+|++.|+++|++.++.
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCcc
Confidence 999999999888777765432 3799999999999865 479999999999999999999997653
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=333.64 Aligned_cols=198 Identities=23% Similarity=0.287 Sum_probs=161.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCC--CCCCcEEEEcC--------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--PKISGTVNLYG-------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~--~~~~G~i~~~g-------------- 658 (1467)
++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999963 46999999999999999999999999999999999994 79999998876
Q ss_pred eEEEEccCCcCCCC-CHHHHHhcCCC----------CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCC-ccCh
Q 000481 659 SIAYVSQTSWIQSG-SIRDNILYGKP----------MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGL-NLSG 722 (1467)
Q Consensus 659 ~i~yv~Q~~~l~~~-ti~eNi~~g~~----------~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~-~LSG 722 (1467)
.++|++|++.++.. |++||+.+... .+ .+++.++++..++..+.. ..+.. +|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFL----------NRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhc----------ccccccCcCH
Confidence 28999999987764 99999976421 11 123344444444432211 12333 5999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc--CCEEEEEeCCeEeEec
Q 000481 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE--VDRILVLEGGQITQSG 800 (1467)
Q Consensus 723 GQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~--~d~i~~l~~G~i~~~G 800 (1467)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.....+|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999876554444468999999999999875 7999999999999999
Q ss_pred ChHHH
Q 000481 801 NYQEL 805 (1467)
Q Consensus 801 ~~~~l 805 (1467)
+++++
T Consensus 228 ~~~~~ 232 (243)
T TIGR01978 228 DVELA 232 (243)
T ss_pred CHHHh
Confidence 98764
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=328.43 Aligned_cols=191 Identities=24% Similarity=0.352 Sum_probs=159.8
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG---------------- 658 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 658 (1467)
++++|+++.|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 689999999952 24699999999999999999999999999999999999999999998865
Q ss_pred eEEEEccCCcC-CCCCHHHHHhcCCC---CCHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHH
Q 000481 659 SIAYVSQTSWI-QSGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQL 730 (1467)
Q Consensus 659 ~i~yv~Q~~~l-~~~ti~eNi~~g~~---~~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~l 730 (1467)
.++|++|++.+ ++.|++||+.++.. .+.+ ++.+.++..++.+.+. ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHHHHHHHH
Confidence 38999999886 56799999988531 2222 3344555555544332 4557899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeE
Q 000481 731 ARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQ 798 (1467)
Q Consensus 731 ARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~ 798 (1467)
|||++.+|+++||||||++||+.+.+.+.+.+.....+++|+|++||+++++.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999998876554443458999999999999876 89999999999863
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=337.07 Aligned_cols=205 Identities=24% Similarity=0.380 Sum_probs=169.3
Q ss_pred CcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG--------- 658 (1467)
Q Consensus 593 ~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g--------- 658 (1467)
..++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 23 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 46999999999963 469999999999999999999999999999999999987 6999998865
Q ss_pred ------eEEEEccCCcCCCCCHHHHHhcCCC---C-CHH----HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHH
Q 000481 659 ------SIAYVSQTSWIQSGSIRDNILYGKP---M-DKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724 (1467)
Q Consensus 659 ------~i~yv~Q~~~l~~~ti~eNi~~g~~---~-~~~----~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQ 724 (1467)
.++|++|++.++..|++||+.++.. . +++ +..++++..++.+++. ....+++.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHH
Confidence 3899999999988899999987531 1 111 1223333333322222 22346788999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChH
Q 000481 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQ 803 (1467)
Q Consensus 725 kqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~ 803 (1467)
|||++||||++.+|+++||||||++||+.+.+.+.+. +....+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 251 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEEL-VQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTD 251 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999988764 4444457999999999999875 8999999999999999999
Q ss_pred HHHhc
Q 000481 804 ELLLA 808 (1467)
Q Consensus 804 ~l~~~ 808 (1467)
++...
T Consensus 252 ~~~~~ 256 (271)
T PRK14238 252 KIFSN 256 (271)
T ss_pred HHHcC
Confidence 88654
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=335.26 Aligned_cols=204 Identities=27% Similarity=0.403 Sum_probs=171.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCC-----CCCcEEEEcC----------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIP-----KISGTVNLYG---------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~-----~~~G~i~~~g---------- 658 (1467)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999963 469999999999999999999999999999999999976 4799998765
Q ss_pred -----eEEEEccCCcCCCCCHHHHHhcCCCC---C---HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHH
Q 000481 659 -----SIAYVSQTSWIQSGSIRDNILYGKPM---D---KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQR 727 (1467)
Q Consensus 659 -----~i~yv~Q~~~l~~~ti~eNi~~g~~~---~---~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqR 727 (1467)
.++|++|++.+++.|++||+.++... . +++..++++.+++..++.. ..+..+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 38999999998888999999986421 1 2344555666666544432 1346778999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEe---------CCeEe
Q 000481 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLE---------GGQIT 797 (1467)
Q Consensus 728 v~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~---------~G~i~ 797 (1467)
++||||++.+|+++||||||++||+++.+.+.+. +....+++|+|++||+++.+.. ||+|++|+ +|+++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~ 238 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEEL-MHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 9999999999999999999999999999988754 4444456899999999999876 89999998 89999
Q ss_pred EecChHHHHhc
Q 000481 798 QSGNYQELLLA 808 (1467)
Q Consensus 798 ~~G~~~~l~~~ 808 (1467)
+.|+.+|+...
T Consensus 239 ~~~~~~~~~~~ 249 (264)
T PRK14243 239 EFDRTEKIFNS 249 (264)
T ss_pred EeCCHHHHHhC
Confidence 99999998654
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=332.25 Aligned_cols=190 Identities=26% Similarity=0.388 Sum_probs=163.0
Q ss_pred eeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHHHhhccEEeccCCcccc-cchHHhc
Q 000481 1233 LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR-GSVRTNL 1311 (1467)
Q Consensus 1233 Lk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i~iIpQdp~LF~-gTIR~NL 1311 (1467)
|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+++||+|.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 589999999999999999999999999999999999999999999999987543 2489999999997 5999998
Q ss_pred CCC-----CCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCC
Q 000481 1312 DPL-----GLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382 (1467)
Q Consensus 1312 dp~-----~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl~LARAlLr~~~ILiLDEaTs~ 1382 (1467)
... ...++ +.+.++++..++.+.... . ...||||||||++||||++++|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-------R----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-------C----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 521 12332 236677888777654332 2 346999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHh
Q 000481 1383 IDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLM 1438 (1467)
Q Consensus 1383 lD~~Te~~Iq~~i~~~~--~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll 1438 (1467)
||+.+.+.+.+.|++.. .++|+|+|+|+++.+.. ||+|++|++|++++.|++.+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998754 37899999999999876 9999999999999999887764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=333.51 Aligned_cols=194 Identities=26% Similarity=0.416 Sum_probs=163.9
Q ss_pred EEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------eEEEEccC
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQT 666 (1467)
Q Consensus 595 I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------~i~yv~Q~ 666 (1467)
++++|+++.|+. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|+
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 689999999963 4699999999999999999999999999999999999999999999876 38999999
Q ss_pred CcCCC-CCHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCC
Q 000481 667 SWIQS-GSIRDNILYGKP---MD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1467)
Q Consensus 667 ~~l~~-~ti~eNi~~g~~---~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~ 738 (1467)
+.++. .|++||+.++.. .. .++..++++.+++.+... .+..+||||||||++||||++.+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-----------RYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHHhcCC
Confidence 98776 699999987531 22 234555666666654332 456789999999999999999999
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEe--CCeEeEecCh
Q 000481 739 DIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLE--GGQITQSGNY 802 (1467)
Q Consensus 739 ~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~--~G~i~~~G~~ 802 (1467)
+++||||||++||+.+.+.+.+.+..... +|+|+|++||+++.+.. ||+|++|+ +|++++.++.
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999998765544323 48999999999999865 89999998 5999987764
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=311.52 Aligned_cols=208 Identities=29% Similarity=0.439 Sum_probs=171.6
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~ 659 (1467)
-++++|++-.|.. ..+|+++||++++||+++++|+||+||||||++|+|..++.+|+|.++| .
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4688999999964 4799999999999999999999999999999999999999999999988 3
Q ss_pred EEEEccCCcCCC-CCHHHHHhcCCCCCHH-HHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcC
Q 000481 660 IAYVSQTSWIQS-GSIRDNILYGKPMDKA-RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737 (1467)
Q Consensus 660 i~yv~Q~~~l~~-~ti~eNi~~g~~~~~~-~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~ 737 (1467)
|+||||.-.+|. .||+||+..|...... +..+. .+++-.+.+|. .......++.+|||||+|-+||||||+++
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999885 5999999988432211 11110 02222333332 11233478899999999999999999999
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhh-cCCEEEEEeCCeEeEecChHHHHhcC
Q 000481 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 738 ~~illLDep~salD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~-~~d~i~~l~~G~i~~~G~~~~l~~~~ 809 (1467)
|++|+||||+.+|-|...+.||+.+.....+ |-||++|-++..+.- -+||.+||++|+|+.+|+.+|+.++.
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999866555434 669999999999865 58999999999999999999998764
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=329.99 Aligned_cols=206 Identities=26% Similarity=0.395 Sum_probs=174.5
Q ss_pred cEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEccCCcCCC
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--SIAYVSQTSWIQS 671 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l~~ 671 (1467)
.++++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|++|++.++.
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 4889999999963 4699999999999999999999999999999999999999999999987 5999999987654
Q ss_pred ---CCHHHHHhcCCCCCHHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000481 672 ---GSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFS 748 (1467)
Q Consensus 672 ---~ti~eNi~~g~~~~~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGGQkqRv~lARal~~~~~illLDep~s 748 (1467)
.|+++|+.+.....++++.++++.+++.+.++ ....+||||||||++||||++.+|+++||||||+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-----------APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 48999987754445667788888888765543 3456899999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHhcC-CcEEEEEccCcchhhc-CCEEEEEeCCeEeEecChHHHHhcCchHHHH
Q 000481 749 AVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1467)
Q Consensus 749 alD~~~~~~i~~~~~~~~~~-~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~~~l~~~~~~~~~~ 815 (1467)
+||+.+.+.+++.+.....+ ++|+|++||+++.+.. ||+|++|++ ++++.|+++++.+. ..+.++
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~-~~~~~~ 216 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH-PEFISM 216 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC-HHHHHH
Confidence 99999999987655443333 8999999999999865 999999965 79999999987643 334443
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=342.45 Aligned_cols=206 Identities=20% Similarity=0.311 Sum_probs=170.9
Q ss_pred cEEEEeEEEEeCCCC-------CCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCCCCcEEEEcC--------
Q 000481 594 SVKIQEGNFSWDPEL-------AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------- 658 (1467)
Q Consensus 594 ~I~~~~~sf~~~~~~-------~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------- 658 (1467)
.++++|++++|+... ..++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 589999999996321 24689999999999999999999999999999999999999999998876
Q ss_pred --------eEEEEccCCc--CC-CCCHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCc
Q 000481 659 --------SIAYVSQTSW--IQ-SGSIRDNILYGK----PMD----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719 (1467)
Q Consensus 659 --------~i~yv~Q~~~--l~-~~ti~eNi~~g~----~~~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~ 719 (1467)
+|+||+|+|. +. ..|+.+|+..+. ... .++..+.++.+++.++. ......+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH----------YDRYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH----------hcCCCcc
Confidence 4999999983 33 359999986421 122 23455666666664322 1235678
Q ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhc-CCcEEEEEccCcchhhc-CCEEEEEeCCeEe
Q 000481 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQIT 797 (1467)
Q Consensus 720 LSGGQkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~-~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~ 797 (1467)
|||||||||+|||||+.+|+++|+||||++||+.+.+++++.+..... .|.|+|+|||+++.+.. ||+|++|++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999876554433 48999999999999975 9999999999999
Q ss_pred EecChHHHHhcC
Q 000481 798 QSGNYQELLLAG 809 (1467)
Q Consensus 798 ~~G~~~~l~~~~ 809 (1467)
+.|+.+++.+..
T Consensus 235 e~g~~~~~~~~p 246 (327)
T PRK11308 235 EKGTKEQIFNNP 246 (327)
T ss_pred EECCHHHHhcCC
Confidence 999999998753
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=336.83 Aligned_cols=206 Identities=24% Similarity=0.388 Sum_probs=171.5
Q ss_pred CCcEEEEeEEEEeCCCCCCCcccceeEEecCCcEEEEeCCCCCChHHHHHHHhCCCCC-----CCcEEEEcC--------
Q 000481 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK-----ISGTVNLYG-------- 658 (1467)
Q Consensus 592 ~~~I~~~~~sf~~~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKSTLl~~l~g~~~~-----~~G~i~~~g-------- 658 (1467)
...++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999963 4699999999999999999999999999999999999874 899998765
Q ss_pred -------eEEEEccCCcCCCCCHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHhcCCCCCCccccCCCCccChH
Q 000481 659 -------SIAYVSQTSWIQSGSIRDNILYGKP---M-D----KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGG 723 (1467)
Q Consensus 659 -------~i~yv~Q~~~l~~~ti~eNi~~g~~---~-~----~~~~~~~~~~~~l~~~~~~l~~g~~t~ig~~g~~LSGG 723 (1467)
.++|++|++.+++.|++||+.++.. . . +++..++++.+++.+++. +..++++.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 4899999999888899999987632 1 1 123445555555544332 2345678899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCccCHHHHHHHHHHHHHHhcCCcEEEEEccCcchhhc-CCEEEEEeCCeEeEecCh
Q 000481 724 QKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802 (1467)
Q Consensus 724 QkqRv~lARal~~~~~illLDep~salD~~~~~~i~~~~~~~~~~~~tvilvtH~~~~l~~-~d~i~~l~~G~i~~~G~~ 802 (1467)
||||++||||++++|+++||||||++||+.+.+.+.+.+. ...+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~-~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 251 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELIT-ELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDT 251 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCH
Confidence 9999999999999999999999999999999998876544 43457899999999999865 899999999999999999
Q ss_pred HHHHhc
Q 000481 803 QELLLA 808 (1467)
Q Consensus 803 ~~l~~~ 808 (1467)
+++...
T Consensus 252 ~~~~~~ 257 (272)
T PRK14236 252 DTLFTS 257 (272)
T ss_pred HHHhcC
Confidence 887643
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=367.12 Aligned_cols=212 Identities=24% Similarity=0.364 Sum_probs=180.1
Q ss_pred eEEEEEEEEEeCCCCCcceeceeEEeeCCcEEEEEcCCCCcHHHHHHHHhcccCCCcceEEECCeeCCCCCHHH-Hhhcc
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD-LRVKL 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~is~~I~~GekVgIVGrTGsGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~-LR~~i 1293 (1467)
-|+++|++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3899999999953 35999999999999999999999999999999999999999999999999997766544 46789
Q ss_pred EEeccCCccccc-chHHhcCCC-------CCCCH----HHHHHHHHHcCCchHHhhCCCCcccccccCCCCCChhHHHHH
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDPL-------GLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLF 1361 (1467)
Q Consensus 1294 ~iIpQdp~LF~g-TIR~NLdp~-------~~~sd----~ei~~aL~~~~l~~~i~~lp~gLdt~v~e~G~nLS~GQrQrl 1361 (1467)
+++||+|.+|.. |+++|+... +..+. +++.++++..++.+. +|.++ .+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-------SDKLV----GELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-------ccCch----hhCCHHHHHHH
Confidence 999999988875 999999631 11222 345667777776443 23333 36999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCcEEEEEccCchhhcc-cCEEEEEeCCEEEEecChhHHhc
Q 000481 1362 CLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1362 ~LARAlLr~~~ILiLDEaTs~lD~~Te~~Iq~~i~~~~-~~~TvI~IAHRl~ti~~-~DrIlVl~~G~ivE~g~p~~Ll~ 1439 (1467)
+|||||+.+|++|||||||++||+.+.+.+.+.|++.. .+.|||+|+|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 99999999999999999999999999999999998753 47899999999999875 89999999999999999887643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1467 | ||||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-58 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-25 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 4e-57 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-09 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-45 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 3e-04 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-45 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-04 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-45 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-05 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-45 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 5e-04 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 3e-45 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 5e-04 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-45 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-04 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-45 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-04 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-44 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-05 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 3e-44 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-05 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 5e-44 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-04 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-43 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 4e-04 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-43 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-04 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-41 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-04 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 5e-34 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-33 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 3e-33 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-30 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-30 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-28 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-28 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 9e-28 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 5e-24 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-26 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 5e-25 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-24 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-17 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 3e-24 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 8e-18 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-23 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 8e-21 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-20 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-20 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-20 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-20 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 9e-20 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 9e-20 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 7e-19 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 7e-19 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-18 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-18 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-17 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-17 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-14 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 9e-14 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 3e-13 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 8e-13 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-12 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-12 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-12 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-11 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-11 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-11 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-10 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-10 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-10 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-10 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-10 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-04 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 7e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 7e-09 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 8e-09 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-05 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-08 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-05 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-08 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-08 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 8e-08 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 8e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-07 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 3e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 6e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 4e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 6e-07 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 8e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 9e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 9e-07 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-06 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-06 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-06 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 8e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-05 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-05 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 2e-04 | ||
| 3uwx_A | 972 | Crystal Structure Of Uvra-Uvrb Complex Length = 972 | 2e-04 | ||
| 3ux8_A | 670 | Crystal Structure Of Uvra Length = 670 | 3e-04 | ||
| 2r6f_A | 972 | Crystal Structure Of Bacillus Stearothermophilus Uv | 3e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 4e-04 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 8e-04 |
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972 | Back alignment and structure |
|
| >pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670 | Back alignment and structure |
|
| >pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 440 bits (1134), Expect = e-142
Identities = 91/255 (35%), Positives = 143/255 (56%), Gaps = 4/255 (1%)
Query: 1199 AIVE--DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256
+++E + WP G++ ++ L +Y +L+ I+ + S G RVG++GRTGSGK
Sbjct: 1 SLIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGK 60
Query: 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL 1316
+TL+SA RL+ G I IDGV S+ L+ R +IPQ+ +F G+ R NLDP
Sbjct: 61 STLLSAFLRLLNTEG-EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAA 119
Query: 1317 YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVL 1376
+SD EIWK ++ L++ I P KLD + D G S G +QL CL R +L + +IL+L
Sbjct: 120 HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL 179
Query: 1377 DEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSK 1436
DE +A +D T I++R ++Q F++CTVI R+ +++ D +V+ K+ +YD +
Sbjct: 180 DEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILE 239
Query: 1437 LME-TNSSFSKLVAE 1450
L F
Sbjct: 240 LYHYPADRFVAGFIG 254
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-27
Identities = 67/316 (21%), Positives = 111/316 (35%), Gaps = 39/316 (12%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
+ +++ + L ++ I Q++ + G G+GKS+LL A L + G
Sbjct: 19 QMTVKDLTAKYTEGGN-AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-LLNTEGE 76
Query: 654 V-------------NLYGSIAYVSQTSWIQSGSIRDNILYGKPMDK---ARYDKAIKACA 697
+ + + Q +I SG+ R N+ P K
Sbjct: 77 IQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL---DPNAAHSDQEIWKVADEVG 133
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
L I F + G LS G KQ + LAR+V + A I L D+P + +D T
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ- 192
Query: 758 LFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLL-AGTAFEQLV 816
+ + A TVIL ++E + E D+ LV+E ++ Q + EL F
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 817 NAH--------------RDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPR--KES 860
D + P+ N Q + GI P S
Sbjct: 253 IGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPS 312
Query: 861 SEGEISVKGLTQLTED 876
++ ++G Q+ E
Sbjct: 313 DIADVILEGEVQVVEQ 328
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 405 bits (1043), Expect = e-131
Identities = 96/259 (37%), Positives = 137/259 (52%), Gaps = 1/259 (0%)
Query: 561 QVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDI 620
+V + + AF + + + + S +FS L P L+ +N I
Sbjct: 2 TTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKI 61
Query: 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILY 680
+ Q +AV GS GAGK+SLL I+GE+ G + G I++ SQ SWI G+I++NI+
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII- 120
Query: 681 GKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADI 740
G D+ RY IKAC L++DI+ F D +G+ G+ LSGGQ+ RI LARAVY DAD+
Sbjct: 121 GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180
Query: 741 YLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
YL D PF +D T +F CV + KT ILVT ++E L + D+IL+L G G
Sbjct: 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG 240
Query: 801 NYQELLLAGTAFEQLVNAH 819
+ EL F +
Sbjct: 241 TFSELQNLRPDFSSKLMGC 259
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 2e-34
Identities = 57/280 (20%), Positives = 104/280 (37%), Gaps = 35/280 (12%)
Query: 1182 ISVERIKQFM--HIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCT 1239
+ +E + F ++ + + + P VLK I
Sbjct: 5 VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINFK 60
Query: 1240 FSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQE 1299
G + V G TG+GKT+L+ + +EP+ G I G ++S Q
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQN 107
Query: 1300 PTLFRGSVRTNLDPLGL-YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358
+ G+++ N+ +G+ Y + ++ CQL+ IS K + + + G S GQR
Sbjct: 108 SWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQR 165
Query: 1359 QLFCLGRVLLKRNRILVLDEANASID--SATDA-----ILQRIIRQEFSNCTVITVAHRV 1411
L R + K + +LD D I + + + +N T I V ++
Sbjct: 166 ARISLARAVYKDADLYLLD------SPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 1412 PTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451
+ +D +++L G Y S+L FS +
Sbjct: 220 EHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGC 259
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 391 bits (1008), Expect = e-127
Identities = 91/228 (39%), Positives = 129/228 (56%), Gaps = 1/228 (0%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650
+ V ++ W+ P L+ +N I+ Q +AV GS GAGK+SLL I+GE+
Sbjct: 3 TTTEVVMENVTAFWEEGGT-PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 651 SGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
G + G I++ SQ SWI G+I++NI++G D+ RY IKAC L++DI+ F D
Sbjct: 62 EGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDN 121
Query: 711 TEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK 770
+G+ G+ LSGGQ+ RI LARAVY DAD+YL D PF +D T +F CV + K
Sbjct: 122 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 181
Query: 771 TVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
T ILVT ++E L + D+IL+L G G + EL F +
Sbjct: 182 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMG 229
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 3e-30
Identities = 53/246 (21%), Positives = 94/246 (38%), Gaps = 34/246 (13%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
+ + + + VLK I G + V G TG+GKT+L+ + +EP+ G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL----YSDDEIWKALEK 1328
I G ++S Q + G+++ N+ + Y + ++
Sbjct: 64 KIKHSG-------------RISFCSQFSWIMPGTIKENI----IFGVSYDEYRYRSVIKA 106
Query: 1329 CQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID--SA 1386
CQL+ IS K + + + G S GQR L R + K + +LD
Sbjct: 107 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD------SPFGY 160
Query: 1387 TDA-----ILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETN 1441
D I + + + +N T I V ++ + +D +++L G Y S+L
Sbjct: 161 LDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQ 220
Query: 1442 SSFSKL 1447
FS
Sbjct: 221 PDFSSK 226
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 391 bits (1008), Expect = e-126
Identities = 109/228 (47%), Positives = 151/228 (66%), Gaps = 3/228 (1%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
S+ ++ F+W PTL G+ I +AV G VG GKSSLL A+L E+ K+ G
Sbjct: 3 SITVRNATFTWARSDP-PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 654 VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
V + GS+AYV Q +WIQ+ S+R+NIL+G +++ Y I+ACAL D+ GD TEI
Sbjct: 62 VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI 121
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV--MAALEKKT 771
G++G+NLSGGQKQR+ LARAVY++ADIYLFDDP SAVDAH +F + L+ KT
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 772 VILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819
ILVTH + +L +VD I+V+ GG+I++ G+YQELL AF + + +
Sbjct: 182 RILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTY 229
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 8e-30
Identities = 65/261 (24%), Positives = 112/261 (42%), Gaps = 42/261 (16%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I +R + + P L GIT + EG V VVG+ G GK++L+SAL ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL----YSDDEIWKALEKC 1329
+ I G ++ +PQ+ + S+R N+ L + ++ C
Sbjct: 62 VAIKG-------------SVAYVPQQAWIQNDSLRENI----LFGCQLEEPYYRSVIQAC 104
Query: 1330 QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID--SAT 1387
L + LP+ + + ++G N S GQ+Q L R + I + D D SA
Sbjct: 105 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD------DPLSAV 158
Query: 1388 DAILQRIIRQEFSNC----------TVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKL 1437
DA + + I F N T I V H + + D+++V+S GK+ E +L
Sbjct: 159 DAHVGKHI---FENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQEL 215
Query: 1438 METNSSFSKLVAEYWSSCRRN 1458
+ + +F++ + Y S +
Sbjct: 216 LARDGAFAEFLRTYASHHHHH 236
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 396 bits (1019), Expect = e-116
Identities = 236/1204 (19%), Positives = 479/1204 (39%), Gaps = 136/1204 (11%)
Query: 326 ITKVVESFTQRHCF-FGSRRSGMRMRSALMVAVYQKQLKLSSLGRK------KHSTGEIV 378
++ ++ Q + + R ++R ++ + H GE+
Sbjct: 119 AGVLIVAYIQVSFWCLAAGRQIHKIRQKF----------FHAIMNQEIGWFDVHDVGELN 168
Query: 379 NYIAVDAYR----MGEFPFWFHLTWSLALQLFLAIGVLFGV-------VGLGALPGLVLF 427
+ D + +G+ + Q F + + L L +
Sbjct: 169 TRLTDDVSKINEGIGD-------KIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVL 221
Query: 428 LICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKF-----KSLI 482
+ + +AKIL + + A + E+L ++ + ++K +L
Sbjct: 222 GLSAGI---WAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLE 278
Query: 483 ESRREKEFKWLSEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATL 542
E++R K ++ A +IY + + G +L S + + TV ++
Sbjct: 279 EAKRLGIKKAITANISMGAAFLLIYAS----YALAFWYGTSLVISKEYSIGQVLTVFFSV 334
Query: 543 RSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH--ELNNDDVRRISLQKSDRSVKIQEG 600
V + + + + ++D+ +++ +++ +
Sbjct: 335 LIGAFSVGQASPNIEAFANARGAAYEVFK-IIDNKPSIDSFSKSGHKPDNIQGNLEFKNI 393
Query: 601 NFSWD--PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPK----ISGTV 654
+FS+ E + L+G+NL +K Q +A+ G+ G GKS+ + + + + G V
Sbjct: 394 HFSYPSRKE--VQILKGLNLKVKSGQTVALVGNSGCGKST----TVQLMQRLYDPLDGMV 447
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL--- 698
++ G I VSQ + + +I +NI YG+ D+ KA
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE--DVTMDEIEKAVKEANA 505
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
I H T +G+RG LSGGQKQRI +ARA+ + I L D+ SA+D + A
Sbjct: 506 YDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV- 564
Query: 759 FNECVMAALEK----KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814
V AAL+K +T I++ H++ + D I +GG I + GN+ EL+ + +
Sbjct: 565 ----VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFK 620
Query: 815 LVNAHRDAITGLGPLDNAGQGGAEKVEKGRTARPEEPNGIYPRKESSEGEISVKGLTQLT 874
LV L N ++++ + + + + R+ + + +
Sbjct: 621 LVMTQT--AGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKL 678
Query: 875 EDEEMEIGDVGWKPFMDYLNVSKG-MSLLCLGVLAQSGFVGLQAAATYWLAYAIQI---- 929
+E DV F L ++ +G+ GLQ A + + + +
Sbjct: 679 STKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNG 738
Query: 930 -----PKITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPML 984
+ S + ++ + S + + + F G +K S+ + +
Sbjct: 739 GPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVS 798
Query: 985 FFDST--PVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAI 1042
+FD G + TRL++D + + + + + L I I WQ+ ++ +
Sbjct: 799 WFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLL 858
Query: 1043 FA---MVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQN 1099
+ V+ ++ + E + T+ + +F
Sbjct: 859 AIVPIIAIAGVVEMKMLSGQALKDK---KELEGSGKIATEAIENFRTVVSLTREQKFETM 915
Query: 1100 YLKLVDI---DASLFFHTNGVMEWLILRVEALQNLTLFTAALFL----VLIPRGYVAPG- 1151
Y + + I +A H G+ Q + F+ A L+ + +
Sbjct: 916 YAQSLQIPYRNAMKKAHVFGIT------FSFTQAMMYFSYAAAFRFGAYLVTQQLMTFEN 969
Query: 1152 --LVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSS 1209
LV ++ + G +S + A +S I + + PE + P+
Sbjct: 970 VLLVFSAIVFGAMAVGQ---VSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM 1026
Query: 1210 WPFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV 1267
+G ++ + Y RP+ P VL+G++ +G + +VG +G GK+T++ L R
Sbjct: 1027 --LEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083
Query: 1268 EPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL---DPLGLYSDDEIWK 1324
+P GS+ +DG +I + ++ LR +L I+ QEP LF S+ N+ D + S +EI +
Sbjct: 1084 DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVR 1143
Query: 1325 ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
A ++ + I SLP+K ++ V D+G S GQ+Q + R L+++ IL+LDEA +++D
Sbjct: 1144 AAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203
Query: 1385 SATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSF 1444
+ ++ ++Q + + T I +AHR+ T+ ++D+++V+ GK+ E+ +L+ +
Sbjct: 1204 TESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIY 1263
Query: 1445 SKLV 1448
+V
Sbjct: 1264 FSMV 1267
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 3e-60
Identities = 114/520 (21%), Positives = 212/520 (40%), Gaps = 23/520 (4%)
Query: 941 YAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSS 1000
Y G+ + Y + F + F ++I + +FD VG + TRL+
Sbjct: 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTD 173
Query: 1001 DLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATAR 1060
D+S ++ I I + I W++ +V + + +
Sbjct: 174 DVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILS 233
Query: 1061 ELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEW 1120
A E + T+ AF + + Y ++ L
Sbjct: 234 SFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITAN- 292
Query: 1121 LILRVEALQNLTLFTAALFL----VLIPRGYVAPGLVGLSLSY----AFTLTGTQVFLSR 1172
+ + A L + AL L+ + G V AF++ +
Sbjct: 293 --ISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE- 349
Query: 1173 WYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRY--RPNAP 1230
AN + + + + P + + P + +G +E + + Y R
Sbjct: 350 ---AFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDN--IQGNLEFKNIHFSYPSRKEVQ 404
Query: 1231 LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290
+LKG+ G V +VG +G GK+T + + RL +P G + IDG DI ++ ++ LR
Sbjct: 405 -ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463
Query: 1291 VKLSIIPQEPTLFRGSVRTNLDPLGLY--SDDEIWKALEKCQLKTTISSLPNKLDSSVSD 1348
+ ++ QEP LF ++ N+ G + DEI KA+++ I LP++ D+ V +
Sbjct: 464 EIIGVVSQEPVLFATTIAENIR-YGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE 522
Query: 1349 EGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVA 1408
G S GQ+Q + R L++ +IL+LDEA +++D+ ++A++Q + + T I +A
Sbjct: 523 RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIA 582
Query: 1409 HRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 1448
HR+ TV ++D++ G ++E +LM + KLV
Sbjct: 583 HRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLV 622
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 5e-45
Identities = 109/543 (20%), Positives = 226/543 (41%), Gaps = 75/543 (13%)
Query: 323 CLIITKVVESFTQRHCFFG--SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNY 380
L I + F Q FG R+R + ++ ++ + S K++TG +
Sbjct: 757 ILGIISFITFFLQ-GFTFGKAGEILTKRLRYMVFKSMLRQDV--SWFDDPKNTTGALTTR 813
Query: 381 IAVDAYRMGEFPFWFHLTWSLALQ----LFLAIGVLF------GVVGLGALPGLVLFLIC 430
+A DA ++ ++ Q L I + ++ L +P + I
Sbjct: 814 LANDAAQVKGA---TGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVP---IIAIA 867
Query: 431 GLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEF 490
G++ K+L + + + +E + N + + + E+KF+++ + +
Sbjct: 868 GVV---EMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPY 924
Query: 491 KWLSEAQLRKAYGTVIYWMSPTIISSVIFL----GCALTGSAPLNASTIFTVLATL---- 542
+ A + + + + ++ G L + + V + +
Sbjct: 925 R---NAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGA 981
Query: 543 RSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH--ELNNDDVRRISLQKSDRSVKIQEG 600
++G+ P+ + VS I +++ E+++ + + + +V+
Sbjct: 982 MAVGQVSSFAPD----YAKATVSASHIIR-IIEKTPEIDSYSTQGLKPNMLEGNVQFSGV 1036
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISG- 652
F++ +IP L+G++L++K Q +A+ GS G GKS+++ + G + + G
Sbjct: 1037 VFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV-FLDGK 1095
Query: 653 ---TVNLY---GSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL---DKDIN 703
+N+ + VSQ + SI +NI YG Y++ ++A + I+
Sbjct: 1096 EIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID 1155
Query: 704 NFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ T +G +G LSGGQKQRI +ARA+ I L D+ SA+D + V
Sbjct: 1156 SLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKV-----V 1210
Query: 764 MAALEK----KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLV 816
AL+K +T I++ H+ LS + D I+V++ G++ + G +Q+LL + +V
Sbjct: 1211 QEALDKAREGRTCIVIAHR---LSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMV 1267
Query: 817 NAH 819
+
Sbjct: 1268 SVQ 1270
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 254 bits (652), Expect = 4e-73
Identities = 110/563 (19%), Positives = 220/563 (39%), Gaps = 42/563 (7%)
Query: 902 LCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGILIGVYAGVSTASAVFVYFRSFFAAH 961
L + + + L + R + A
Sbjct: 35 LLIKYAIDGVINNHALTTDEKVHHLT---IAIGIALFIFVI----VRPPIEFIRQYLAQW 87
Query: 962 LGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGT 1021
K N + F+ + VG++++R+ +D+ I ++ +
Sbjct: 88 TSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCI 147
Query: 1022 ELLAIIGIMTFVTWQ----VLVVAIFAMVAVRFV----QRYYIATARELIRINGTTKAPV 1073
++ + IM F+ + L + F ++ V ++ ++ L + G
Sbjct: 148 TIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQG------ 201
Query: 1074 MNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTL 1133
+ E QG+ +++F + D +N+ K + + + + ++
Sbjct: 202 --FLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGP 259
Query: 1134 FTAALF-LVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMH 1192
L G + G + + Y L G L + L S++R+ Q +
Sbjct: 260 IIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319
Query: 1193 IPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRT 1252
+ I +GRI++ + +Y N +LK I + +G V VG +
Sbjct: 320 EDYD---IKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMS 376
Query: 1253 GSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD 1312
G GK+TLI+ + R + G ILIDG +I LR ++ ++ Q+ LF +V+ N+
Sbjct: 377 GGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI- 435
Query: 1313 PLGLY-----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367
L +D+E+ +A + I +LP D+ V + G S GQ+Q + R+
Sbjct: 436 ---LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 492
Query: 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGK 1427
L IL+LDEA +++D +++I+Q + + T + VAHR+ T+ +D ++V+ G
Sbjct: 493 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGH 552
Query: 1428 LLE---YDEPSKLMETNSSFSKL 1447
++E + E L+ ++ L
Sbjct: 553 IVETGTHRE---LIAKQGAYEHL 572
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 9e-49
Identities = 118/587 (20%), Positives = 227/587 (38%), Gaps = 66/587 (11%)
Query: 275 YLKENIFIAICALLRTIAVVVGPLLL-----YAFVNYSNRGEENLQEGLSIVGC-LIITK 328
Y I +++ ++ PLL+ N++ +E + +G L I
Sbjct: 12 YKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFV 71
Query: 329 VVESFTQR-HCFFGSR---RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVD 384
+V + + + +R L Y LS+ + G++++ + D
Sbjct: 72 IVRPPIEFIRQYLAQWTSNKILYDIRKKL----YNHLQALSARFYANNQVGQVISRVIND 127
Query: 385 AYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVG----LGALPGLVLFLICGLLNVPFAKI 440
+ +F + L + ++L + + L L I +
Sbjct: 128 VEQTKDF-----ILTGL-MNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 441 LQKCQSEFMIAQDERLRSTS---EILNNMKIIKLQSWE----EKFKSLIESRREKEFKWL 493
+ + E + + ++K + E + F + + L
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTR---AL 238
Query: 494 SEAQLRKAYGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIP 553
+ I ++ VI +G L S + T+ + L + P+R +
Sbjct: 239 KHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLV 298
Query: 554 EALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTL 613
+ + + Q S DR+ + + + V ++ + I +F ++ P L
Sbjct: 299 ASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPIL 357
Query: 614 RGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT-------VNLYGS 659
+ +NL I+ + +A G G GKS+L+ I G+I I G +L
Sbjct: 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI-LIDGHNIKDFLTGSLRNQ 416
Query: 660 IAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
I V Q + + S ++++NIL G+P +A K I N G TE+G+RG+
Sbjct: 417 IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV 476
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVIL 774
LSGGQKQR+ +AR N+ I + D+ SA+D + + + AL+ +T ++
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI-----IQEALDVLSKDRTTLI 531
Query: 775 VTHQVEFLS---EVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
V H+ LS D+I+V+E G I ++G ++EL+ A+E L +
Sbjct: 532 VAHR---LSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI 575
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 252 bits (647), Expect = 3e-72
Identities = 115/573 (20%), Positives = 229/573 (39%), Gaps = 49/573 (8%)
Query: 901 LLCLGVLAQSGFVGLQAAATYWLAYAI---------QIPKITSGILIGVYAGVSTASAVF 951
L + +A L + + ++IG+ +
Sbjct: 26 GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMI----LRGIT 81
Query: 952 VYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPF 1011
Y S+ + + K + P+ FFD G +L+R++ D +
Sbjct: 82 SYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSG 141
Query: 1012 SIVFVAASGTELLAIIGIMTFVTWQ----VLVVAIFAMVAVRFVQRYYIATARELIRING 1067
+++ V G ++ + +M + +WQ ++V+A +A+R V + + R + +
Sbjct: 142 ALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF----RSISKNMQ 197
Query: 1068 TTKAPVMNYTAETSQGVVTIRAFNM-----------VDRFFQNYLKLVDIDASLFFHTNG 1116
T V + +G + F ++ +K+V +
Sbjct: 198 NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISD----P 253
Query: 1117 VMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176
+++ + +L + AA F + + G + + S L L+
Sbjct: 254 IIQLIA----SLALAFVLYAASFPSV--MDSLTAGTITVVFSSMIALMRPLKSLTNVNAQ 307
Query: 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGI 1236
+ + + + + E E KR G +E R + Y L+ I
Sbjct: 308 FQRGMAACQTLFAILDSEQE---KDEGKRVID--RATGDLEFRNVTFTYPGREVPALRNI 362
Query: 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
G V +VGR+GSGK+T+ S + R + G IL+DG D+ L LR +++++
Sbjct: 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALV 422
Query: 1297 PQEPTLFRGSVRTN--LDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWS 1354
Q LF +V N YS ++I +A I+ + N LD+ + + G S
Sbjct: 423 SQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482
Query: 1355 AGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTV 1414
GQRQ + R LL+ + IL+LDEA +++D+ ++ +Q + + N T + +AHR+ T+
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI 542
Query: 1415 IDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 1447
+D ++V+ G ++E S+L+ + +++L
Sbjct: 543 EQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 2e-51
Identities = 120/579 (20%), Positives = 248/579 (42%), Gaps = 60/579 (10%)
Query: 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVN--YSNRGEENLQEGLSIVGCLIITKVVES 332
+ I I +L + LL ++ + L +V L+I + + S
Sbjct: 23 FKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITS 82
Query: 333 FTQRHCFFG-SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEF 391
+ +C S + M MR L + + + K STG +++ I D+ ++
Sbjct: 83 YISSYCISWVSGKVVMTMRRRL----FGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASS 138
Query: 392 PFWFHLTWSLAL---QLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEF 448
+ +L + IG+ + ++L ++ ++++ + ++ +S
Sbjct: 139 -----SSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSIS 193
Query: 449 MIAQDERLRSTS---EILNNMKIIKL---QSWE-EKFKSLIESRREKEFKWLSEAQLRKA 501
Q+ + T+ ++L K + + Q E ++F + R + K
Sbjct: 194 KNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMK---MVSASSI 250
Query: 502 YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQ 561
+I ++ ++ V++ + L A TI V +++ ++ P++ + + +
Sbjct: 251 SDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310
Query: 562 VKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIK 621
+ + A +LD E D+ +R + ++ ++ + F++ +P LR +NL I
Sbjct: 311 GMAACQTLFA-ILDSEQEKDEGKR-VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIP 367
Query: 622 WAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT-------VNLYGSIAYVSQTS 667
+ +A+ G G+GKS++ I G I + G +L +A VSQ
Sbjct: 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHI-LMDGHDLREYTLASLRNQVALVSQNV 426
Query: 668 WIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
+ + ++ +NI Y + + + ++A + IN D+G T IG+ G+ LSGGQ+
Sbjct: 427 HLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVILVTHQVEF 781
QRI +ARA+ D+ I + D+ SA+D + + AAL++ +T +++ H+
Sbjct: 487 QRIAIARALLRDSPILILDEATSALDTESERA-----IQAALDELQKNRTSLVIAHR--- 538
Query: 782 LSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
LS + D I+V+E G I + G + ELL + QL
Sbjct: 539 LSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 577
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 249 bits (639), Expect = 2e-71
Identities = 111/573 (19%), Positives = 236/573 (41%), Gaps = 49/573 (8%)
Query: 901 LLCLGVLAQSGFVGLQAAATYWLAYAI---------QIPKITSGILIGVYAGVSTASAVF 951
L + +A L + +I +++G+ +
Sbjct: 26 GLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMF----VRGLS 81
Query: 952 VYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPF 1011
+ S+ + + N P+ FFD G +L+R++ D +
Sbjct: 82 GFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSR 141
Query: 1012 SIVFVAASGTELLAIIGIMTFVTWQ----VLVVAIFAMVAVRFVQRYYIATARELIRING 1067
++V + G ++ ++ +M + +WQ ++VVA A+ FV + + +R + G
Sbjct: 142 ALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMG 201
Query: 1068 TTKAPVMNYTAETSQGVVTIRAFNM-----------VDRFFQNYLKLVDIDASLFFHTNG 1116
V + + +G + ++ + Q +KLV +
Sbjct: 202 H----VTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIAD----P 253
Query: 1117 VMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCY 1176
V++ + +L + A + R + PG + S F L L+
Sbjct: 254 VIQMIA----SLALFAVLFLASVDSI--RAELTPGTFTVVFSAMFGLMRPLKALTSVTSE 307
Query: 1177 LANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGI 1236
+ + + + M + E K G ++++ + Y+ L +
Sbjct: 308 FQRGMAACQTLFGLMDLETE---RDNGKYEAE--RVNGEVDVKDVTFTYQGKEKPALSHV 362
Query: 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
+ + +G V +VGR+GSGK+T+ + R + GSI +DG D+ L +LR +++
Sbjct: 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALV 422
Query: 1297 PQEPTLFRGSVRTN--LDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWS 1354
Q LF ++ N G Y+ ++I +A + I ++P LD+ + + G + S
Sbjct: 423 SQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482
Query: 1355 AGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTV 1414
GQRQ + R LL+ +L+LDEA +++D+ ++ +Q + + N TV+ +AHR+ T+
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTI 542
Query: 1415 IDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 1447
+D ++V+ G+++E + L+ + ++++L
Sbjct: 543 EQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 191 bits (488), Expect = 1e-51
Identities = 122/579 (21%), Positives = 241/579 (41%), Gaps = 60/579 (10%)
Query: 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVN--YSNRGEENLQEGLSIVGCLIITKVVES 332
Y + I ++ A LL ++ + N L+ ++ L+ + +
Sbjct: 23 YKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSG 82
Query: 333 FTQRHCFFG-SRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEF 391
F +C S M+MR L + + + + STG +++ I D+ ++
Sbjct: 83 FASSYCLSWVSGNVVMQMRRRL----FNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGA 138
Query: 392 PFWFHLTWSL------ALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQ 445
+ +L + + ++F +L +V+ + +K +K
Sbjct: 139 -----TSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKIS 193
Query: 446 SEFMIAQDERLRSTSEILNNMKIIKL---QSWE-EKFKSLIESRREKEFKWLSEAQLRKA 501
A S ++L K++ Q E ++F + S R++ K +
Sbjct: 194 RNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMK---LVSAQSI 250
Query: 502 YGTVIYWMSPTIISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQ 561
VI ++ + +V+FL + A L T V + + + P++ + S +
Sbjct: 251 ADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQR 310
Query: 562 VKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIK 621
+ + L+D E D+ + ++ + V +++ F++ + P L V+ I
Sbjct: 311 GMAACQTLFG-LMDLETERDN-GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIP 367
Query: 622 WAQKIAVCGSVGAGKSSLL------YAIL-GEIPKISGT-------VNLYGSIAYVSQTS 667
+ +A+ G G+GKS++ Y + G I + G NL A VSQ
Sbjct: 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI-CLDGHDVRDYKLTNLRRHFALVSQNV 426
Query: 668 WIQSGSIRDNILYGKPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725
+ + +I +NI Y + + + ++A + + I N G T IG+ G +LSGGQ+
Sbjct: 427 HLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486
Query: 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK----KTVILVTHQVEF 781
QR+ +ARA+ DA + + D+ SA+D + + AAL++ KTV+++ H+
Sbjct: 487 QRVAIARALLRDAPVLILDEATSALDTESERA-----IQAALDELQKNKTVLVIAHR--- 538
Query: 782 LSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
LS + D ILV++ G+I + G + +LL A+ QL
Sbjct: 539 LSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHR 577
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 3e-66
Identities = 133/613 (21%), Positives = 248/613 (40%), Gaps = 88/613 (14%)
Query: 886 WKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITSGI-------LI 938
+ + YL L + + + L + Y + I + +
Sbjct: 25 LRRLLGYLRPHTF--TLIMVFVFVTVSSILGVLSPYLIGKTID--VVFVPRRFDLLPRYM 80
Query: 939 GVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRL 998
+ + +++ + + L + + P+ FFD TP G I++R+
Sbjct: 81 LILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRV 140
Query: 999 SSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQ----VLVVAIFAMVAVRFV--- 1051
+D+ ++ + SI+ + L + +M V L + ++ + V
Sbjct: 141 INDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQ 200
Query: 1052 -QRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDI--DA 1108
++Y+ R L ++NG E G+ I+ F ++ + + ++ +
Sbjct: 201 TRKYFYENQRVLGQLNG--------IIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKV 252
Query: 1109 SL---FFHTNGVMEWLILRVEALQNLTLFTAALFLVLIPRGYVAPGLVG--LSLSYAFTL 1163
F +GV+ L L G+ G L+L T+
Sbjct: 253 GTKAQIF--SGVL----------PPLMNMVNNL-------GFALISGFGGWLALKDIITV 293
Query: 1164 TGTQVFL--SRWYC-------YLANYIIS----VERIKQFMHIPPEPPAIVEDKRPPSSW 1210
F+ SR + N I ERI + + + E D
Sbjct: 294 GTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD----DPDAVELR 349
Query: 1211 PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPA 1270
+G IE + + Y P+ LK IT G +V +VG TGSGKTT+++ L R +
Sbjct: 350 EVRGEIEFKNVWFSYDKKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD 408
Query: 1271 GGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY-----SDDEIWKA 1325
G IL+DG+DI + LR + I+ Q+ LF +V+ NL Y +D+EI +A
Sbjct: 409 RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENL----KYGNPGATDEEIKEA 464
Query: 1326 LEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDS 1385
+ I LP ++ ++D GE+ S GQRQL + R L +IL+LDEA +++D+
Sbjct: 465 AKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDT 524
Query: 1386 ATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMET----- 1440
T+ +Q + + T I +AHR+ T+ ++D+++VL G+++E + +L++
Sbjct: 525 KTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYY 584
Query: 1441 ---NSSFSKLVAE 1450
S + +V +
Sbjct: 585 ELFTSQYGLVVEK 597
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 3e-38
Identities = 133/612 (21%), Positives = 250/612 (40%), Gaps = 93/612 (15%)
Query: 260 SNNNGNLVRKVITNVYLKEN----IFIAICALLRTIAVVVGPLLLYAFVN--YSNRGEEN 313
N +R+++ YL+ + I + + + +I V+ P L+ ++ + R +
Sbjct: 18 LKNPTATLRRLLG--YLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDL 75
Query: 314 LQEGLSIVGCLIITKVVESFTQRHCFFG-SRRSGMRMRSALMVAVYQKQLKLSSLGRK-- 370
L + I+G + + + Q S+ R+R L KL +
Sbjct: 76 LPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFE-------KLQRVPVGFF 128
Query: 371 -KHSTGEIVNYIA--VDAYRMGEFPFWFHLTWSLALQLFLAIGVLFGVVG----LGALPG 423
+ G+I++ + VD L S+ Q F I L G V + +
Sbjct: 129 DRTPHGDIISRVINDVDNINNV-------LGNSII-QFFSGIVTLAGAVIMMFRVNVILS 180
Query: 424 LVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTS---EILNNMKIIKLQSWEEKFKS 480
LV I L + + + + F Q + E ++ + +IKL + EEK
Sbjct: 181 LVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKE-- 238
Query: 481 LIESRREKEFKWLSEAQLRKAYGTVIY--WMSPTI--ISSVIFLGCALTGS--APLNAST 534
++F ++E+ + I+ + P + ++++ F + G A + T
Sbjct: 239 ------MEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIIT 292
Query: 535 IFTVLATL---RSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVRRISLQKS 591
+ T+ + R P+ + +++ S +RI L D E DD + L++
Sbjct: 293 VGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEIL-DLEEEKDDPDAVELREV 351
Query: 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL------YAIL- 644
++ + FS+D + P L+ + IK QK+A+ G G+GK++++ Y +
Sbjct: 352 RGEIEFKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR 409
Query: 645 GEIPKISGT-------VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYD--KAIKA 695
G+I + G +L SI V Q + + S ++++N+ YG P + +A K
Sbjct: 410 GQI-LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKEAAKL 467
Query: 696 CALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT- 754
D I + G T + G +LS GQ+Q + + RA + I + D+ S VD T
Sbjct: 468 THSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTE 527
Query: 755 ----AATLFNECVMAAL-EKKTVILVTHQVEFLS---EVDRILVLEGGQITQSGNYQELL 806
AA M L E KT I++ H+ L+ D I+VL G+I + G + EL+
Sbjct: 528 KSIQAA-------MWKLMEGKTSIIIAHR---LNTIKNADLIIVLRDGEIVEMGKHDELI 577
Query: 807 LAGTAFEQLVNA 818
+ +L +
Sbjct: 578 QKRGFYYELFTS 589
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 221 bits (566), Expect = 1e-61
Identities = 118/545 (21%), Positives = 236/545 (43%), Gaps = 72/545 (13%)
Query: 932 ITSGILIGVYAGVSTASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLF----FD 987
+ +GIL+ + A + + + FA+ AS+ F + +F+ + F +
Sbjct: 63 LKTGILMLIVALIGAVGGIGC---TVFAS----YASQNFGADLRRDLFRKVLSFSISNVN 115
Query: 988 STPVGRILTRLSSD-----------LSILDFDIPF----SIVFVAASGTELLAIIGIMTF 1032
++TRL++D L I+ P IV + +L +++ +
Sbjct: 116 RFHTSSLITRLTNDVTQLQNLVMMLLRIV-VRAPLLFVGGIVMAVSINVKLSSVLIFL-- 172
Query: 1033 VTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNM 1092
+ + + + + + +N + E GV +RAF
Sbjct: 173 ----IPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVR--------ENLLGVRVVRAFRR 220
Query: 1093 ----VDRFFQNYLKLVDIDASLFFHTNGVMEWLILRVEALQNLTLFTAALFLV-----LI 1143
+ F + L ++ + + L + + ++ L+
Sbjct: 221 EEYENENFRKANESL----RRSIISAFSLIVFAL----PLFIFIVNMGMIAVLWFGGVLV 272
Query: 1144 PRGYVAPG-LVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVE 1202
+ G ++ +Y + + + + ++ S +R+ + ++ E PAI E
Sbjct: 273 RNNQMEIGSIMAY-TNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLN---EKPAIEE 328
Query: 1203 DKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISA 1262
+ +G + ++ RY N VL G+ + G+ V V+G TGSGK+TL++
Sbjct: 329 ADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNL 388
Query: 1263 LFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY----- 1317
+ RL++P G + +D +D+ ++ LKDLR +S +PQE LF G+++ NL +
Sbjct: 389 IPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENL----KWGREDA 444
Query: 1318 SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLD 1377
+DDEI +A + Q+ I SLP DS V G N+S GQ+Q + R L+K+ ++L+LD
Sbjct: 445 TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILD 504
Query: 1378 EANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKL 1437
+ +S+D T+ + +++ CT + ++PT + +D ++VL GK+ + +L
Sbjct: 505 DCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564
Query: 1438 METNS 1442
+E
Sbjct: 565 LEHCK 569
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 4e-43
Identities = 98/452 (21%), Positives = 183/452 (40%), Gaps = 85/452 (18%)
Query: 395 FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDE 454
+ L+ L I + + G LF + +Q+ + DE
Sbjct: 159 VSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLF-----------RKIQE-------STDE 200
Query: 455 RLRSTSEILNNMKIIKLQSWEEKFKSLIESRR-EKEFKWLSEAQLRKAYGTVIYWMSPTI 513
R E L +++++ EE E+ K + L + + ++I + P
Sbjct: 201 VNRVVRENLLGVRVVRAFRREEY-----ENENFRKANESLRRSIIS--AFSLIVFALPLF 253
Query: 514 -------ISSVIFLGCALTGSAPLNASTI-------FTVLATLRSMGEPVRMIPEALSIM 559
+ +V++ G L + + +I ++ +L +G + I A
Sbjct: 254 IFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRA---- 309
Query: 560 IQVKVSFDRINAFLLDHELN-NDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVNL 618
S R+ +L+ + + ++L + SV + F + E P L GVN
Sbjct: 310 ---SASAKRVLE-VLNEKPAIEEADNALALPNVEGSVSFENVEFRY-FENTDPVLSGVNF 364
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT-------VNLYGSIAYVS 664
+K +AV G G+GKS+L+ I G + ++ +L G I+ V
Sbjct: 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV-EVDELDVRTVKLKDLRGHISAVP 423
Query: 665 QTSWIQSGSIRDNILYGKP------MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
Q + + SG+I++N+ +G+ + +A A A D I + G + + + G
Sbjct: 424 QETVLFSGTIKENLKWGREDATDDEIVEA----AKIAQIHDF-IISLPEGYDSRVERGGR 478
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK----TVIL 774
N SGGQKQR+ +ARA+ + + DD S+VD T + + L++ T +
Sbjct: 479 NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI-----LDGLKRYTKGCTTFI 533
Query: 775 VTHQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+T ++ D+ILVL G++ G ++ELL
Sbjct: 534 ITQKIPTALLADKILVLHEGKVAGFGTHKELL 565
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 9e-58
Identities = 72/243 (29%), Positives = 129/243 (53%), Gaps = 10/243 (4%)
Query: 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAG 1271
I R ++ RY+P++P++L I + +G +G+VGR+GSGK+TL + R P
Sbjct: 4 HHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 1272 GSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY-----SDDEIWKAL 1326
G +LIDG D+ LR ++ ++ Q+ L S+ N+ S +++ A
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI----SLANPGMSVEKVIYAA 119
Query: 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
+ IS L ++ V ++G S GQRQ + R L+ +IL+ DEA +++D
Sbjct: 120 KLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 1387 TDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLM-ETNSSFS 1445
++ ++ R + + TVI +AHR+ TV ++D ++V+ GK++E + +L+ E S +S
Sbjct: 180 SEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239
Query: 1446 KLV 1448
L
Sbjct: 240 YLY 242
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 1e-38
Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 32/227 (14%)
Query: 602 FSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISG-- 652
F + P+ L +NL IK + I + G G+GKS+L I G++ I G
Sbjct: 15 FRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV-LIDGHD 72
Query: 653 --TVNLY---GSIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
+ + V Q + + + SI DNI P M + A K I+
Sbjct: 73 LALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 132
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + +M
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV-----IMRN 187
Query: 767 LEK----KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELL 806
+ K +TVI++ H+ LS V DRI+V+E G+I + G ++ELL
Sbjct: 188 MHKICKGRTVIIIAHR---LSTVKNADRIIVMEKGKIVEQGKHKELL 231
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 7e-55
Identities = 65/236 (27%), Positives = 135/236 (57%), Gaps = 3/236 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ R + Y ++ +L+ I+ + + G +G GK+T+ S L R +P G I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD--PLGLYSDDEIWKALEKCQLKT 1333
IDG I ++ L++ R ++ + Q+ + G++R NL G Y+D+++W+ L+ ++
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1334 TISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQR 1393
+ ++P++L++ V + G S GQRQ + R L+ +IL+LDEA AS+DS +++++Q+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1394 IIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449
+ T + +AHR+ T++D+D + + G++ + ++L+ T+ ++K V+
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 1e-41
Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 34/240 (14%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT 653
+F++D LR ++ + + IA G G GKS++ + GEI I G
Sbjct: 8 DFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI-TIDGQ 64
Query: 654 -------VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYD--KAIKACALDKDINN 704
N I +VSQ S I +G+IR+N+ YG D D + + + N
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 705 FDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
TE+G+RG+ +SGGQ+QR+ +ARA + I + D+ +++D+ + + V
Sbjct: 125 MPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM-----VQ 179
Query: 765 AALEK----KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
AL+ +T +++ H+ LS + D+I +E GQIT SG + EL+ + + V+
Sbjct: 180 KALDSLMKGRTTLVIAHR---LSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 1e-54
Identities = 70/286 (24%), Positives = 132/286 (46%), Gaps = 14/286 (4%)
Query: 1167 QVFLSRWYCYLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYR 1226
I +E + + E + + KGRIE + Y
Sbjct: 9 HHSSGLVPRGSHM-FIDMENMFDLLKEETE---VKDLPGAGPLRFQKGRIEFENVHFSYA 64
Query: 1227 PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGL 1286
L+ ++ T G + +VG +G+GK+T++ LFR + + G I IDG DI +
Sbjct: 65 DGRE-TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 1287 KDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY-----SDDEIWKALEKCQLKTTISSLPNK 1341
LR + ++PQ+ LF ++ N+ Y +DE+ A + + I + P
Sbjct: 124 ASLRSHIGVVPQDTVLFNDTIADNI----RYGRVTAGNDEVEAAAQAAGIHDAIMAFPEG 179
Query: 1342 LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSN 1401
+ V + G S G++Q + R +LK I++LDEA +++D++ + +Q + + +N
Sbjct: 180 YRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCAN 239
Query: 1402 CTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 1447
T I VAHR+ TV+++D ++V+ G ++E L+ ++ +
Sbjct: 240 RTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 2e-39
Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 33/237 (13%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISGT 653
+FS+ TL+ V+ + Q +A+ G GAGKS++L + G I +I G
Sbjct: 60 HFSYADG--RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI-RIDGQ 116
Query: 654 -------VNLYGSIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAIKACALDKDINNF 705
+L I V Q + + + +I DNI YG+ + A +A + I F
Sbjct: 117 DISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAF 176
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
G T++G+RGL LSGG+KQR+ +AR + I L D+ SA+D + A
Sbjct: 177 PEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERA-----IQA 231
Query: 766 ALEK----KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+L K +T I+V H+ LS V D+ILV++ G I + G ++ LL G + +
Sbjct: 232 SLAKVCANRTTIVVAHR---LSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 6e-52
Identities = 70/248 (28%), Positives = 121/248 (48%), Gaps = 15/248 (6%)
Query: 1211 PFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268
KG ++ + + Y PN VL+G+T T G +VG GSGK+T+ + L L +
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 1269 PAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY------SDDEI 1322
P GG +L+DG + L +++ + QEP LF S R N+ Y + +EI
Sbjct: 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENI----AYGLTRTPTMEEI 126
Query: 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
+ IS P D+ V + G S GQRQ L R L+++ R+L+LD A ++
Sbjct: 127 TAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSA 186
Query: 1383 IDSATDAILQRIIRQ--EFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMET 1440
+D+ +QR++ + E+++ TV+ + ++ + ++ L G + E +LME
Sbjct: 187 LDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246
Query: 1441 NSSFSKLV 1448
+ +V
Sbjct: 247 GGCYRSMV 254
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 4e-38
Identities = 59/236 (25%), Positives = 101/236 (42%), Gaps = 36/236 (15%)
Query: 610 IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL-------GEIPKISG----TVNLY- 657
+ L+G+ + + A+ G G+GKS++ + G++ + G + +
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV-LLDGEPLVQYDHHY 90
Query: 658 --GSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACAL---DKDINNFDHGDLTE 712
+A V Q + S R+NI YG ++ I+ F G TE
Sbjct: 91 LHTQVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGAHDFISGFPQGYDTE 149
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--- 769
+G+ G LSGGQ+Q + LARA+ + + D+ SA+DA V L +
Sbjct: 150 VGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR-----VQRLLYESPE 204
Query: 770 ---KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLVNAH 819
+TV+L+T Q LS IL L+ G + + G + +L+ G + +V A
Sbjct: 205 WASRTVLLITQQ---LSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVEAL 257
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 8e-52
Identities = 76/258 (29%), Positives = 131/258 (50%), Gaps = 13/258 (5%)
Query: 1199 AIVEDKRPPSSWPFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGK 1256
+ F IE + Y + N LK I GT +VG TGSGK
Sbjct: 1 GLESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHR-TLKSINFFIPSGTTCALVGHTGSGK 59
Query: 1257 TTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL 1316
+T+ L+R + G I I G ++ +R + I+PQ+ LF +++ N+ L
Sbjct: 60 STIAKLLYRFYDAEG-DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI----L 114
Query: 1317 Y-----SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371
Y +D+E+ KA + QL I +LP K D+ V ++G S G+RQ + R LLK
Sbjct: 115 YGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174
Query: 1372 RILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEY 1431
+I++ DEA +S+DS T+ + Q+ + N T+I +AHR+ T+ ++ +++L+ GK++E
Sbjct: 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEK 234
Query: 1432 DEPSKLMETNSSFSKLVA 1449
L++ N ++++
Sbjct: 235 GTHKDLLKLNGEYAEMWN 252
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-41
Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 30/238 (12%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLL------YAILGEIPKISG-- 652
NFS+ + TL+ +N I A+ G G+GKS++ Y G+I KI G
Sbjct: 24 NFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI-KIGGKN 82
Query: 653 --TVN---LYGSIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFD 706
N + I V Q + + + +I+ NILYGK KA K+ L I
Sbjct: 83 VNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALP 142
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
T +G +G+ LSGG++QRI +AR + D I +FD+ S++D+ T A
Sbjct: 143 KKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL-----FQKA 197
Query: 767 LEK----KTVILVTHQVEFLSEV---DRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
+E +T+I++ H+ LS + + I++L G+I + G +++LL + ++ N
Sbjct: 198 VEDLRKNRTLIIIAHR---LSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 39/224 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L+ ++ I K + G GAGK++LL + P SGTVNL+G
Sbjct: 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96
Query: 659 -SIAYVSQT---SWIQSGSIRDNIL---------YGKPMDKARYDKAIKACALDKDINNF 705
I +VS + + + + D ++ Y D+ R ++A + L
Sbjct: 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR-NEAHQ--LLKL----V 149
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN--ECV 763
Q LS G+KQR+ +ARA+ + + D+P + +D +L + + +
Sbjct: 150 GMSAK--AQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSL 207
Query: 764 MAALEKKTVILVTHQVEF-LSEVDRILVLEGGQITQSGNYQELL 806
+ +I VTH +E + +IL+L+ GQ Q G +++L
Sbjct: 208 SDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 1e-20
Identities = 46/252 (18%), Positives = 103/252 (40%), Gaps = 34/252 (13%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I+L Q+ + +LK I+ ++G + + G G+GKTTL++ L G++
Sbjct: 22 IQLDQIGRMKQGKT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 1276 IDGVDICSMG--LKDLRVKLSIIPQEPTL---FRGSVRTNL-----DPLGLY---SDDEI 1322
+ G +G + +R + + V + +G+Y D+
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139
Query: 1323 WKA---LEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEA 1379
+A L+ + L S G++Q + R L+ + ++L+LDE
Sbjct: 140 NEAHQLLKLVGMSAKAQQYIGYL-----------STGEKQRVMIARALMGQPQVLILDEP 188
Query: 1380 NASID-SATDAILQRI--IRQEFSNCTVITVAHRVPTVIDS-DMVMVLSYGKLLEYDEPS 1435
A +D A +++L + + + +I V H + + + +++L G+ ++
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248
Query: 1436 KLMETNSSFSKL 1447
++ T+ + S+
Sbjct: 249 DIL-TSENMSRF 259
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-28
Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 34/211 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664
L +NL++ +K+ + G G+GK++LL AI G +P SG + + G I Y +
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPY-SGNIFINGMEVRKIRNYIRYST 78
Query: 665 Q--TSWIQSGSIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
++ ++ D + K +D+ + + +KA L ++I ++ +
Sbjct: 79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR------RKLYK---- 128
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK--KTVILVTH 777
LS GQ ++ + A+ + +I D+PF VDA + +++ K ILVTH
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRY-----IKEYGKEGILVTH 183
Query: 778 -QVEFLSEVDRILVL-EGGQITQSGNYQELL 806
+ G ++ + ELL
Sbjct: 184 ELDMLNLYKEYKAYFLVGNRLQGPISVSELL 214
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 2e-20
Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 32/237 (13%)
Query: 1216 IELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I+L+ + I + L+ I G +V ++G GSGKTTL+ A+ L+ P G+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG--SVRTN----LDPLGLYSDDEIWKALE 1327
I I+G+++ + +R + P + +V + GL D + L+
Sbjct: 60 IFINGMEV-----RKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGL-DRDLFLEMLK 113
Query: 1328 KCQLKTTISS-LPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
+L I KL SAGQ L L + I+ LDE ++D+A
Sbjct: 114 ALKLGEEILRRKLYKL-----------SAGQSVLVRTSLALASQPEIVGLDEPFENVDAA 162
Query: 1387 TDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLE-YDEPSKLMETN 1441
++ R I++ I V H + + + G L+ S+L+E++
Sbjct: 163 RRHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
++++ ++ F + E + + +N D+ +AV G G GKS+LL +LG I
Sbjct: 2 NKALSVENLGFYYQAENFL--FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 652 GTVNLYGSIAYVSQT-SWIQSGSIRDNILYGKPMDKARY------------DKAIKACAL 698
G + +Y SI +V Q S + S+ D +L G R D + AL
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMG------RSTHINTFAKPKSHDYQVAMQAL 113
Query: 699 DK-DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
D ++ + + T LSGGQ+Q I +ARA+ ++ + L D+P SA+D
Sbjct: 114 DYLNLTHLAKREFTS-------LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDI 166
Query: 758 LFNECV-MAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQ 798
+ + + +A + TV+ THQ + + ++ L+L
Sbjct: 167 VLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 43/211 (20%), Positives = 88/211 (41%), Gaps = 45/211 (21%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ + L Y+ + + + ++G + V+G+ G GK+TL+ L + P G I
Sbjct: 5 LSVENLGFYYQ-AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTL-FRGSV-------RTNLDP-LGLYS-----DDE 1321
+ + +PQ + F SV R+ + ++ D +
Sbjct: 64 VYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRS---THINTFAKPKSHDYQ 107
Query: 1322 I-WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEAN 1380
+ +AL+ ++ L + +S+S G GQRQL + R + ++++LDE
Sbjct: 108 VAMQALD----YLNLTHLAKREFTSLS--G-----GQRQLILIARAIASECKLILLDEPT 156
Query: 1381 ASIDSATDAILQRIIRQ--EFSNCTVITVAH 1409
+++D A I+ ++ + N TV+ H
Sbjct: 157 SALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-24
Identities = 39/194 (20%), Positives = 79/194 (40%), Gaps = 21/194 (10%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQ 670
L + ++ + + G G GK++L+ + G + G +++ Q +
Sbjct: 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPK 425
Query: 671 S-GSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ 726
G++R + G+ ++ +K +D I+ +LSGG+ Q
Sbjct: 426 FPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQ-----------HLSGGELQ 474
Query: 727 RIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAALEKKTVILVTHQVEFLS 783
R+ + A+ ADIYL D+P + +D+ + + KKT +V H +
Sbjct: 475 RVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR--FILHNKKTAFIVEHDFIMAT 532
Query: 784 EV-DRILVLEGGQI 796
+ D+++V EG
Sbjct: 533 YLADKVIVFEGIPS 546
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 5e-18
Identities = 46/259 (17%), Positives = 78/259 (30%), Gaps = 36/259 (13%)
Query: 1195 PEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGS 1254
+ VL FS+ + ++G G+
Sbjct: 330 RTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGT 389
Query: 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT--LFRGSVRTNLD 1312
GKTTLI L ++P G + + K++ LF +R
Sbjct: 390 GKTTLIKLLAGALKPDEGQDIPKL------NVSMKPQKIAPKFPGTVRQLFFKKIRGQFL 443
Query: 1313 PLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNR 1372
+ ++ ++ I L S G+ Q + L
Sbjct: 444 -----NPQFQTDVVKPLRIDDIIDQEVQHL-----------SGGELQRVAIVLALGIPAD 487
Query: 1373 ILVLDEANASIDSATDAILQRIIR--QEFSNCTVITVAH--RVPTVIDSDMVMVLSYGKL 1428
I ++DE +A +DS I ++IR + T V H + T + +D V+V
Sbjct: 488 IYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL-ADKVIVF----- 541
Query: 1429 LEYDEPSKLMETNSSFSKL 1447
PSK + S L
Sbjct: 542 --EGIPSKNAHARAPESLL 558
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 1e-17
Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 51/218 (23%)
Query: 616 VNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS---------------- 659
+ Q + + G+ G GKS+ L + G+ G +
Sbjct: 96 RLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNY 155
Query: 660 --------------IAYVSQTSWIQSGSIR---DNILYGKPMDKARYDKAIKACALDKDI 702
YV G ++ + + + IK
Sbjct: 156 FTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKIL------ 209
Query: 703 NNFDHGDLTEIGQRGL-NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
L + +R + LSGG+ QR + + +AD+Y+FD+P S +D
Sbjct: 210 ------QLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQ- 262
Query: 762 CVMAAL--EKKTVILVTHQVEFLSEV-DRILVLEGGQI 796
++ +L K VI V H + L + D + ++ G
Sbjct: 263 -IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 1e-14
Identities = 48/241 (19%), Positives = 85/241 (35%), Gaps = 38/241 (15%)
Query: 1224 RYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVD--- 1280
RY N+ T G +G+VG G GK+T + L +P G
Sbjct: 86 RYSANS--FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEI 143
Query: 1281 ICSMGLKDLR--------------VKLSIIPQEPTLFRGSVRTNLDPLGLYSD---DEIW 1323
I +L+ +K + P +G V+ + L L + +++
Sbjct: 144 IKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVK 203
Query: 1324 KALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASI 1383
+ ++ QL+ + KL S G+ Q F +G ++ + + DE ++ +
Sbjct: 204 RYIKILQLENVLKRDIEKL-----------SGGELQRFAIGMSCVQEADVYMFDEPSSYL 252
Query: 1384 DSATDAILQRIIR--QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440
D +IIR VI V H + + SD V ++ YG Y +
Sbjct: 253 DVKQRLNAAQIIRSLLA-PTKYVICVEHDLSVLDYLSDFVCII-YGVPSVYGVVTLPASV 310
Query: 1441 N 1441
Sbjct: 311 R 311
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 34/240 (14%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+++ +L Y LKGI G ++G G GK+TL +++P+ G IL
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 1276 IDGVDICS--MGLKDLRVKLSIIPQEPT--LFRGSVR-------TNLDPLGLYSDDEIWK 1324
D I G+ LR + I+ Q+P LF SV N + L +DEI K
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVN---MKL-PEDEIRK 122
Query: 1325 ----ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEAN 1380
AL++ ++ + L S GQ++ + VL+ ++L+LDE
Sbjct: 123 RVDNALKRTGIEHLKDKPTHCL-----------SFGQKKRVAIAGVLVMEPKVLILDEPT 171
Query: 1381 ASID-SATDAILQRIIR-QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
A +D I++ ++ Q+ T+I H + V D V V+ G+++ P ++
Sbjct: 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 50/244 (20%), Positives = 102/244 (41%), Gaps = 43/244 (17%)
Query: 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKI 650
D +K++E N+++ L+G+N++IK + A+ G G GKS+L G +
Sbjct: 4 EDYILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61
Query: 651 SGTVNLYG-SIAYVSQTSW----------------IQSGSIRDNILYGKPMD-------- 685
SG + I Y + + S S+ ++ +G ++
Sbjct: 62 SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG-AVNMKLPEDEI 120
Query: 686 KARYDKAIKACALDKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFD 744
+ R D A+K + + + LS GQK+R+ +A + + + + D
Sbjct: 121 RKRVDNALKRT------------GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILD 168
Query: 745 DPFSAVDAHTAATLFNECV-MAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNY 802
+P + +D + + V M T+I+ TH ++ + D + V++ G++ GN
Sbjct: 169 EPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 228
Query: 803 QELL 806
+E+
Sbjct: 229 KEVF 232
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 59/239 (24%), Positives = 99/239 (41%), Gaps = 33/239 (13%)
Query: 1216 IELRQLKIRYRPNAPL---VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
IE+ + + PL L+ ++ +EG + V G TGSGK+TL+ + L+EP G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPT--LFRGSVRTNLD----PLGLYSDDEIWK-- 1324
+L DG ++R + I Q P F V + Y D +
Sbjct: 63 DVLYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFD--EVAFAVKNFYPDRDPVPLV 117
Query: 1325 --ALEKCQLKTT--ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEAN 1380
A+E L +P L S G+++ + V++ IL+LDE
Sbjct: 118 KKAMEFVGLDFDSFKDRVPFFL-----------SGGEKRRVAIASVIVHEPDILILDEPL 166
Query: 1381 ASID-SATDAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKL 1437
+D +L+ + + + TVI ++H + TVI+ D V+VL GK + +
Sbjct: 167 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 59/236 (25%), Positives = 95/236 (40%), Gaps = 34/236 (14%)
Query: 594 SVKIQEGNFSWDP--ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKIS 651
+++ + + L L V+L I + + V G+ G+GKS+LL + G I S
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 652 GTVNLYG----------SIAYVSQTSWIQ--SGSIRDNILYGKPM-------DKARYDKA 692
G V G +I Q Q + + D + + KA
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFA-VKNFYPDRDPVPLVKKA 120
Query: 693 IKACALDKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVD 751
++ LD D R LSGG+K+R+ +A + ++ DI + D+P +D
Sbjct: 121 MEFVGLDFD----------SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLD 170
Query: 752 AHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806
L KTVIL++H +E + VDR++VLE G+ G E L
Sbjct: 171 REGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 1e-22
Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 28/198 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVS 664
L + + I+ + G G GK++LL I + + G + G I ++
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84
Query: 665 QTSWIQSG-SIRDNI-----LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGL 718
+ + S+ D + LYG ++K A+++ ++ ++ ++
Sbjct: 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV------------EVLDLKKKLG 132
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LS G +R+QLA + +A+IY+ DDP A+D + + + EK VI+ +
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR- 191
Query: 779 VEFLSEVDRILVLEGGQI 796
E LS D L
Sbjct: 192 -EELSYCDVNENLHKYST 208
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 5e-18
Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 29/221 (13%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E+R L + Y L+ IT T +G V G G GKTTL+ + ++P G I+
Sbjct: 11 LEIRDLSVGYDKPV---LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLG-LY----SDDEIWKALEKC 1329
+GV I ++ K+ +P+E + R SV L + LY + +EI ALE
Sbjct: 68 YNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 122
Query: 1330 QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID-SATD 1388
++ + + S G + L LL I VLD+ +ID +
Sbjct: 123 EVL------------DLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 170
Query: 1389 AILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLL 1429
+L+ I+ VI + + D L
Sbjct: 171 KVLKSILEILKEKGIVIISSREELSYCDV--NENLHKYSTK 209
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 7e-22
Identities = 46/250 (18%), Positives = 94/250 (37%), Gaps = 33/250 (13%)
Query: 569 INAFLLDH-ELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIP---------TLRGVNL 618
IN FL + N +R ++ + V + + ++ L N
Sbjct: 230 INNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNG 289
Query: 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTSWI-QSGSIR- 675
+ K + I + G G GK++ ++GEI G+V ++Y Q + G+++
Sbjct: 290 EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ 349
Query: 676 ---DNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732
+ +++ K L + + + + +LSGG+ Q++ +A
Sbjct: 350 YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN-----------DLSGGELQKLYIAA 398
Query: 733 AVYNDADIYLFDDPFSAVDAHT---AATLFNECVMAALEKKTVILVTHQVEFLSEV-DRI 788
+ +AD+Y+ D P S +D A + K ++ H + + DRI
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKR--VTRERKAVTFIIDHDLSIHDYIADRI 456
Query: 789 LVLEGGQITQ 798
+V +G
Sbjct: 457 IVFKGEPEKA 466
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 6e-19
Identities = 46/256 (17%), Positives = 88/256 (34%), Gaps = 37/256 (14%)
Query: 1191 MHIPPEP--PAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGV 1248
M I P+ + E S K +++ ++ + L EG +G+
Sbjct: 243 MKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF---QLVVDNGEAKEGEIIGI 299
Query: 1249 VGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVR 1308
+G G GKTT L + GS+ + + L K I G+V+
Sbjct: 300 LGPNGIGKTTFARILVGEITADEGSVTPEK--------QILSYKPQRIFPNY---DGTVQ 348
Query: 1309 TNL-DPLGLY---SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364
L + S + ++ L + S N L S G+ Q +
Sbjct: 349 QYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDL-----------SGGELQKLYIA 397
Query: 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIR--QEFSNCTVITVAHRVPTVID--SDMV 1420
L K + VLD+ ++ +D I+ + I+ + H + ++ D +D +
Sbjct: 398 ATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRI 456
Query: 1421 MVLSYGKLLEYDEPSK 1436
+V G+ + +
Sbjct: 457 IVF-KGEPEKAGLATS 471
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 1e-17
Identities = 47/227 (20%), Positives = 80/227 (35%), Gaps = 48/227 (21%)
Query: 613 LRGVNLDI-KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------ 659
+ L K + V G G GK+++L + GEI G N
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 660 ------------------IAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKD 701
I YV S G++ N + K ++ + D+ + +
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASKFLKGTV--NEILTKIDERGKKDEVKELLNMTNL 131
Query: 702 INNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE 761
N + LSGG QR+ +A ++ +AD+Y+FD P S +D +
Sbjct: 132 WNKDAN-----------ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK- 179
Query: 762 CVMAAL-EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ L + K VI+V H + L + D I ++ G +
Sbjct: 180 -AIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYA 225
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 3e-13
Identities = 46/237 (19%), Positives = 90/237 (37%), Gaps = 46/237 (19%)
Query: 1224 RYRPNAPLVLKGITC-TFSEGTRVGVVGRTGSGKTTLISALFRLVEP--AGGSILIDGVD 1280
RY+ N K T T +GV+G+ G GKTT++ L + P + + +
Sbjct: 8 RYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDE 64
Query: 1281 ICSMGLKDLR-VKLSIIPQEP------------------TLFRGSVRTNLDPLGLYSDDE 1321
+ LK R ++ +E +G+V L + +
Sbjct: 65 V----LKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKI------D 114
Query: 1322 IWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381
++ + ++ N + + S G Q + LL+ + + D+ ++
Sbjct: 115 ERGKKDEV---KELLNMTNLWNKDAN----ILSGGGLQRLLVAASLLREADVYIFDQPSS 167
Query: 1382 SIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID--SDMVMVLSYGKLLEYDEPSK 1436
+D + + IR+ N VI V H + V+D +D++ ++ YG+ Y SK
Sbjct: 168 YLDVRERMNMAKAIRELLKNKYVIVVDHDL-IVLDYLTDLIHII-YGESSVYGRVSK 222
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-21
Identities = 43/189 (22%), Positives = 78/189 (41%), Gaps = 21/189 (11%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS- 671
L +I+ + I + G G GK++ + + G G V ++AY Q +
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE 431
Query: 672 GSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728
G++ + + K + +K + + +LSGG+ QR+
Sbjct: 432 GTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----------DLSGGELQRV 480
Query: 729 QLARAVYNDADIYLFDDPFSAVDAHT---AATLFNECVMAALEKKTVILVTHQVEFLSEV 785
+A + DADIYL D+P + +D + + +KT ++V H V + V
Sbjct: 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH--LMEKNEKTALVVEHDVLMIDYV 538
Query: 786 -DRILVLEG 793
DR++V EG
Sbjct: 539 SDRLIVFEG 547
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 6e-18
Identities = 56/272 (20%), Positives = 98/272 (36%), Gaps = 42/272 (15%)
Query: 1186 RIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTR 1245
R + + + V+ +R +E +L Y L+ +G
Sbjct: 335 RFRPYEIRFTKLSERVDVERET-------LVEYPRLVKDYGSFK---LEVEPGEIRKGEV 384
Query: 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG 1305
+G+VG G GKTT + L + EP G + D ++ K +K + G
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL----TVAYKPQYIKAE--------YEG 432
Query: 1306 SVR---TNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362
+V + +D L S+ + L+ + L S G+ Q
Sbjct: 433 TVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDL-----------SGGELQRVA 481
Query: 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIR--QEFSNCTVITVAHRVPTVID--SD 1418
+ LL+ I +LDE +A +D + R IR E + T + V H +ID SD
Sbjct: 482 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD-VLMIDYVSD 540
Query: 1419 MVMVLSYGKLLEYDEPSKLMETNSSFSKLVAE 1450
++V G+ + M ++ +A
Sbjct: 541 RLIVF-EGEPGRHGRALPPMGMREGMNRFLAS 571
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 1e-17
Identities = 42/223 (18%), Positives = 73/223 (32%), Gaps = 50/223 (22%)
Query: 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIA---------------------- 661
+ + G G GK++ + + G++ N
Sbjct: 118 MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIR 177
Query: 662 ------YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
YV G +R+ + K + + ++ N +L +
Sbjct: 178 PVVKPQYVDLLPKAVKGKVREL------LKKVDEVGKFEEVVKELELENVLDRELHQ--- 228
Query: 716 RGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL--EKKTVI 773
LSGG+ QR+ +A A+ A Y FD+P S +D + V+ L E K V+
Sbjct: 229 ----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR--VIRRLANEGKAVL 282
Query: 774 LVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQL 815
+V H + L + D I V+ G G Y +
Sbjct: 283 VVEHDLAVLDYLSDVIHVVYGE----PGVYGIFSKPKGTRNGI 321
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 5e-14
Identities = 51/229 (22%), Positives = 84/229 (36%), Gaps = 41/229 (17%)
Query: 1224 RYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP------AGGSILID 1277
RY NA + +G VG+VG G+GKTT + L + P +I
Sbjct: 100 RYGVNA--FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIR 157
Query: 1278 GVDICSMGLKDLRV---KLSIIPQEPTLFRGSVRTNLDPL--------GLYSDDEIWKAL 1326
+ R+ ++ + + +L P L DE+ K
Sbjct: 158 AFRGNELQNYFERLKNGEIRPVVKPQ-------YVDLLPKAVKGKVRELLKKVDEVGKFE 210
Query: 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
E + L N LD + S G+ Q + LL++ DE ++ +D
Sbjct: 211 EVVKEL----ELENVLDREL----HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 262
Query: 1387 TDAILQRIIR--QEFSNCTVITVAHRVPTVID--SDMVMVLSYGKLLEY 1431
+ R+IR V+ V H + V+D SD++ V+ YG+ Y
Sbjct: 263 QRLKVARVIRRLAN-EGKAVLVVEHDL-AVLDYLSDVIHVV-YGEPGVY 308
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 1e-21
Identities = 61/261 (23%), Positives = 103/261 (39%), Gaps = 30/261 (11%)
Query: 549 VRMIPEALSIMIQVKVSFDRINAFLLDHELNNDDVR----RISLQKSDRSVKIQEGNFSW 604
V P I Q K + + IN FL L +++VR I K+ V+I+
Sbjct: 231 VYGEPGVYGIFSQPKGTRNGINEFL-RGYLKDENVRFRPYEIKFTKTGERVEIERETLVT 289
Query: 605 DPELAIP----TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSI 660
P L L +IK + I + G G GK++ + + G G + ++
Sbjct: 290 YPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTV 349
Query: 661 AYVSQTSWIQS-GSIRDNI---LYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
AY Q G++ + + K + +K + + +
Sbjct: 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVN--------- 400
Query: 717 GLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---TAATLFNECVMAALEKKTVI 773
LSGG+ QR+ +A + DADIYL D+P + +D + + +KT +
Sbjct: 401 --ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH--LMEKNEKTAL 456
Query: 774 LVTHQVEFLSEV-DRILVLEG 793
+V H V + V DR++V EG
Sbjct: 457 VVEHDVLMIDYVSDRLMVFEG 477
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 5e-18
Identities = 54/263 (20%), Positives = 92/263 (34%), Gaps = 35/263 (13%)
Query: 1195 PEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGS 1254
+ + +L Y L+ +G +G+VG G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFR---LEVEPGEIKKGEVIGIVGPNGI 323
Query: 1255 GKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVR---TNL 1311
GKTT + L + EP G I D ++ K +K + G+V + +
Sbjct: 324 GKTTFVKMLAGVEEPTEGKIEWDL----TVAYKPQYIKAD--------YEGTVYELLSKI 371
Query: 1312 DPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRN 1371
D L S+ + L+ + N+L S G+ Q + LL+
Sbjct: 372 DASKLNSNFYKTELLKPLGIIDLYDREVNEL-----------SGGELQRVAIAATLLRDA 420
Query: 1372 RILVLDEANASIDSATDAILQRIIR--QEFSNCTVITVAH--RVPTVIDSDMVMVLSYGK 1427
I +LDE +A +D + R IR E + T + V H + + SD +MV G+
Sbjct: 421 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV-SDRLMVF-EGE 478
Query: 1428 LLEYDEPSKLMETNSSFSKLVAE 1450
+Y M ++ +A
Sbjct: 479 PGKYGRALPPMGMREGMNRFLAS 501
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 6e-16
Identities = 43/216 (19%), Positives = 78/216 (36%), Gaps = 46/216 (21%)
Query: 615 GVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI--------PKISGTVNLY--------- 657
+K + + G G GKS+ + + G++ G + +
Sbjct: 39 YRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98
Query: 658 -----GSIA------YVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFD 706
G I YV G + + + K + + ++ +KA L+ +
Sbjct: 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--KKADETGKLEEVVKALELENVLEREI 156
Query: 707 HGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+LSGG+ QR+ +A A+ +A Y FD+P S +D +
Sbjct: 157 Q-----------HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR--AIRR 203
Query: 767 L--EKKTVILVTHQVEFLSEV-DRILVLEGGQITQS 799
L E K+V++V H + L + D I V+ G
Sbjct: 204 LSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYG 239
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-14
Identities = 52/238 (21%), Positives = 86/238 (36%), Gaps = 39/238 (16%)
Query: 1216 IELRQLKI----RYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEP-- 1269
+ QL+ RY NA + EG VG+VG G+GK+T + L + P
Sbjct: 18 SHMEQLEEDCVHRYGVNA--FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL 75
Query: 1270 ----AGGSILIDGVDI--CSMGLKDLRV-KLSIIPQE------PTLFRGSVRTNLDPLGL 1316
+I + L+ ++ + + P +G V L
Sbjct: 76 CGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK--- 132
Query: 1317 YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVL 1376
DE K E + L N L+ + + S G+ Q + LL+
Sbjct: 133 --ADETGKLEEVVK----ALELENVLEREIQ----HLSGGELQRVAIAAALLRNATFYFF 182
Query: 1377 DEANASIDSATDAILQRIIR--QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEY 1431
DE ++ +D R IR E +V+ V H + + SD++ V+ YG+ Y
Sbjct: 183 DEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLDYLSDIIHVV-YGEPGVY 238
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 6e-18
Identities = 50/248 (20%), Positives = 91/248 (36%), Gaps = 54/248 (21%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
++L+ + L ++ G + +VG G+GK+TL++ + + GSI
Sbjct: 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 56
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEPTL-FRGSVRTNLDPLGL----YSDDEI-WKALEK 1328
G + + L + + + Q+ T F V L L + E+
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW---HYLTLHQHDKTRTELLNDVAGA 113
Query: 1329 CQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLL-------KRNRILVLDEANA 1381
L +KL S + S G+ Q L V+L ++L+LDE
Sbjct: 114 LALD-------DKLGRSTNQ----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMN 162
Query: 1382 SID----SATDAILQRIIRQEFSNCTVITVAHRVPTVID-------SDMVMVLSYGKLLE 1430
S+D SA D IL + +Q ++ +H D + +L GK+L
Sbjct: 163 SLDVAQQSALDKILSALSQQ---GLAIVMSSH------DLNHTLRHAHRAWLLKGGKMLA 213
Query: 1431 YDEPSKLM 1438
+++
Sbjct: 214 SGRREEVL 221
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 4e-17
Identities = 43/220 (19%), Positives = 83/220 (37%), Gaps = 40/220 (18%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
L ++ +++ + + + G GAGKS+LL + G G++ G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALH 74
Query: 660 IAYVSQTSWIQSG-SIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
AY+SQ + + + + A L + R
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL------------ALDDKLGR 122
Query: 717 GLN-LSGGQKQRIQLARA-------VYNDADIYLFDDPFSAVD-AHTAATLFNECVMAAL 767
N LSGG+ QR++LA + L D+P +++D A +A +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALSQ 181
Query: 768 EKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ +++ +H + R +L+GG++ SG +E+L
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 88.2 bits (218), Expect = 1e-17
Identities = 50/202 (24%), Positives = 76/202 (37%), Gaps = 26/202 (12%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE----IPKISGTVNLYGSIAYVSQT 666
L L +K A++ +CG G GKS+L+ AI P YV
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEEC-----RTVYVEHD 503
Query: 667 --SWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQ 724
S+ D + K + ++ L SGG
Sbjct: 504 IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISAL----------SGGW 553
Query: 725 KQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784
K ++ LARAV +ADI L D+P + +D A L + T I ++H FL
Sbjct: 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWL--VNYLNTC-GITSITISHDSVFLDN 610
Query: 785 V-DRILVLEGGQITQ-SGNYQE 804
V + I+ EG ++ + GN+ E
Sbjct: 611 VCEYIINYEGLKLRKYKGNFTE 632
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 7e-11
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE--KKTVILVT 776
LSGGQK ++ LA + + + D+P + +D + L AL+ + VI++T
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL-----SKALKEFEGGVIIIT 955
Query: 777 HQVEFLSEV-DRILVLEGGQITQS-GNY 802
H EF + + + ++ G++T S N+
Sbjct: 956 HSAEFTKNLTEEVWAVKDGRMTPSGHNW 983
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 2e-09
Identities = 49/300 (16%), Positives = 89/300 (29%), Gaps = 60/300 (20%)
Query: 1176 YLANYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKG 1235
Y+ ++ + + +G +L + A ++L
Sbjct: 395 YMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGE-DLCNCEFSLAYGAKILLNK 453
Query: 1236 ITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM-----GLKDLR 1290
R G+ G G GK+TL+ A+ G + + G
Sbjct: 454 TQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDGFPTQEECRTVYVEHDIDGTHSDT 511
Query: 1291 VKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEG 1350
L + + + +++ L G + + IS+L
Sbjct: 512 SVLDFVFESGVGTKEAIKDKLIEFGFTDEM----------IAMPISAL------------ 549
Query: 1351 ENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAH- 1409
S G + L R +L+ IL+LDE +D+ A L + T IT++H
Sbjct: 550 ---SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHD 604
Query: 1410 -----RVPTVIDSDMVMVLSYGKLLEYDEPSKLMETN-SSFSKLVAEYWSSCRRNSYQNL 1463
V I + KL +Y + N + F K +Y+ L
Sbjct: 605 SVFLDNVCEYI-----INYEGLKLRKY-------KGNFTEFVKKCPA------AKAYEEL 646
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 3e-07
Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 15/202 (7%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
VK+ F + P + P + +N + +IAV G GAGKS+L+ + GE+ SG V
Sbjct: 672 VKVTNMEFQY-PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 655 NLYG--SIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+ IAY+ Q ++ S D + + + D++ + + + E
Sbjct: 731 YTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGE-------DRETMDRANRQINE 783
Query: 713 IGQRGLN---LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
+N G +RI + + Y ++ F + + +M+
Sbjct: 784 NDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNA 843
Query: 770 KTVI--LVTHQVEFLSEVDRIL 789
LV + ++EVD
Sbjct: 844 WIPRGELVESHSKMVAEVDMKE 865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 4e-06
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
K +++ ++ +Y + + I S +R+ V+G G+GK+TLI+ L + P G
Sbjct: 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
Query: 1273 SI 1274
+
Sbjct: 729 EV 730
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 41/222 (18%)
Query: 616 VNLDIKWAQK-IAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGS-----------IAY 662
+N+D + + + G GAGKS L I G P G V L G+ I +
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD-RGEVRLNGADITPLPPERRGIGF 74
Query: 663 VSQTSWIQS------GSIRDNILYG-KPMDKARYDKAIKACALDKDINNFDHGDLTEIGQ 715
V Q S+ NI YG + +++ D+ ++ +K + +
Sbjct: 75 V-----PQDYALFPHLSVYRNIAYGLRNVERVERDRRVRE-MAEK-------LGIAHLLD 121
Query: 716 RGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK---T 771
R LSGG++QR+ LARA+ + L D+P SAVD T L E + ++++
Sbjct: 122 RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEE--LRFVQREFDVP 179
Query: 772 VILVTH-QVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812
++ VTH +E D + V+ G+I + G +EL A
Sbjct: 180 ILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 5e-09
Identities = 54/220 (24%), Positives = 90/220 (40%), Gaps = 45/220 (20%)
Query: 1250 GRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVR 1308
G TG+GK+ + + +V+P G + ++G DI L R + +PQ+ LF SV
Sbjct: 31 GPTGAGKSVFLELIAGIVKPDRGEVRLNGADI--TPLPPERRGIGFVPQDYALFPHLSVY 88
Query: 1309 TNLD-PLGLYSDDEIWK----ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCL 1363
N+ L E + EK + + P +L S G+RQ L
Sbjct: 89 RNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARL-----------SGGERQRVAL 137
Query: 1364 GRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSN------CTVITVAHRVPTVID- 1416
R L+ + R+L+LDE SA D + ++ +E ++ V H D
Sbjct: 138 ARALVIQPRLLLLDEPL----SAVDLKTKGVLMEELRFVQREFDVPILHVTH------DL 187
Query: 1417 ------SDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAE 1450
+D V V+ G+++E + +L + VAE
Sbjct: 188 IEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE---VAE 224
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 5e-17
Identities = 75/280 (26%), Positives = 121/280 (43%), Gaps = 61/280 (21%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGSIAYVSQTSW--- 668
L ++L + + + + G+ G GK++LL + G E P SG ++L G + T+
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-SGEISLSGKTIFSKNTNLPVR 78
Query: 669 -------IQSG------SIRDNILYG---KPMDKARYDKAIKACALDKDINNFDHGDLTE 712
+Q G ++ NI YG A+ + I+A L+ ++E
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEA-MLEL-------TGISE 130
Query: 713 IGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK- 770
+ R + LSGGQ+QR LARA+ D ++ L D+PFSA+D + + M A +
Sbjct: 131 LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED--MIAALRAN 188
Query: 771 --TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL-----------------LLAGT 810
+ + V+H + E L DRI V++ G+I Q+ + EL +
Sbjct: 189 GKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIGEGIVFPAA 248
Query: 811 AFEQLVNAHRDAITGLGPLDNAGQGGAEKVEKGRTA-RPE 849
+NA A LG L Q GA +G RPE
Sbjct: 249 -----LNADGTADCRLGRL--PVQSGAPAGTRGTLLIRPE 281
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 3e-07
Identities = 57/250 (22%), Positives = 96/250 (38%), Gaps = 54/250 (21%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
+ + L ++ VL I+ + G + ++G +G GKTTL+ L +P G I
Sbjct: 4 ALHIGHLSKSFQNTP--VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1275 LIDGVDICSMGLKDLRVK-----LSIIPQEPTLFRG-SVRTN----LDPLGLYSDDEIWK 1324
+ G I S + L + QE LF +V N L + +
Sbjct: 62 SLSGKTIFSKN---TNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG-RTAQERQ 117
Query: 1325 ----ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEAN 1380
LE + P++L S GQ+Q L R L +++LDE
Sbjct: 118 RIEAMLELTGISELAGRYPHEL-----------SGGQQQRAALARALAPDPELILLDEPF 166
Query: 1381 ASIDSATDAILQRIIRQEF------SNCTVITVAHRVPTVID-------SDMVMVLSYGK 1427
SA D L+R IR++ + + + V+H D +D + V+ G+
Sbjct: 167 ----SALDEQLRRQIREDMIAALRANGKSAVFVSH------DREEALQYADRIAVMKQGR 216
Query: 1428 LLEYDEPSKL 1437
+L+ P +L
Sbjct: 217 ILQTASPHEL 226
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 3e-16
Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 52/219 (23%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYG-SIAYVS--QTS 667
L+G++L +K + +++ G+ G+GKS+LLY ILG + P G V L G + Y + + S
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPT-EGKVFLEGKEVDYTNEKELS 77
Query: 668 WIQSGSI---------------RDNI----LYGKPMDKARYDKAIKACALDKDINNFDHG 708
+++ + +N+ L K ++ L +
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL--LSE-------- 127
Query: 709 DLTEIGQRGLN----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVM 764
+G + LSGG++QR+ +ARA+ N+ + D+P +D+ VM
Sbjct: 128 --LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR-----VM 180
Query: 765 AALEK-----KTVILVTHQVEFLSEVDRILVLEGGQITQ 798
K ++++VTH+ E R L ++ G++
Sbjct: 181 DIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 9e-09
Identities = 49/211 (23%), Positives = 84/211 (39%), Gaps = 34/211 (16%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ +K R +LKGI+ + +G V ++G +GSGK+TL+ L L P G +
Sbjct: 5 LRAENIKKVIRGYE--ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 1276 IDGVDICSMGLKDL----RVKLSIIPQEPTLF-RGSVRTNLD-PLGLYSD-------DEI 1322
++G ++ K+L KL + Q L + N+ P+ L +
Sbjct: 63 LEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPM-LKMGKPKKEAKERG 121
Query: 1323 WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
L + L +S P +L S G++Q + R L +L DE +
Sbjct: 122 EYLLSELGLGDKLSRKPYEL-----------SGGEQQRVAIARALANEPILLFADEPTGN 170
Query: 1383 IDSATD----AILQRIIRQEFSNCTVITVAH 1409
+DSA I +I +++ V H
Sbjct: 171 LDSANTKRVMDIFLKINEG---GTSIVMVTH 198
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 1e-15
Identities = 54/232 (23%), Positives = 97/232 (41%), Gaps = 49/232 (21%)
Query: 606 PELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIP-----KISGT-VNLYG 658
+ + L VN++I+ ++ + G GAGK++ + I G ++P V G
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73
Query: 659 S---------IAYVSQTSWIQS------GSIRDNILYG---KPMDKARYDKAIKACA--L 698
I V Q+ + +NI + M K K ++ A L
Sbjct: 74 KLIVPPEDRKIGMV-----FQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL 128
Query: 699 DKDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
D + + LSG Q+QR+ LARA+ D + L D+PFS +DA +
Sbjct: 129 D----------IHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178
Query: 758 LFNECVMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+ ++ + T+++V+H + + DR+ VL G++ Q G ++L
Sbjct: 179 ARAL--VKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 65/257 (25%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
RI ++ + ++ + L + G R G++G +G+GKTT + + L P+ G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1275 LIDGVDICSMGLKDLRVKLSIIPQEPTLFRG--------------SVRTNLD-PLGL--Y 1317
D + S G + P++ R + N+ PL
Sbjct: 63 YFDDRLVASNGKLIVP------PED----RKIGMVFQTWALYPNLTAFENIAFPLTNMKM 112
Query: 1318 SDDEIWK----ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373
S +EI K + + ++ P +L S Q+Q L R L+K +
Sbjct: 113 SKEEIRKRVEEVAKILDIHHVLNHFPREL-----------SGAQQQRVALARALVKDPSL 161
Query: 1374 LVLDEANASIDSATDAILQRIIRQEFS------NCTVITVAHRVPTVID-------SDMV 1420
L+LDE S DA ++ R T++ V+H D +D V
Sbjct: 162 LLLDEPF----SNLDARMRDSARALVKEVQSRLGVTLLVVSH------DPADIFAIADRV 211
Query: 1421 MVLSYGKLLEYDEPSKL 1437
VL GKL++ +P L
Sbjct: 212 GVLVKGKLVQVGKPEDL 228
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 50/234 (21%), Positives = 103/234 (44%), Gaps = 24/234 (10%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ ++ L+ R +LKGI+ EG G++G G+GKTT + + L++P+ G +
Sbjct: 16 VVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLG-LY------SDDEIWKALE 1327
+ G ++ + +R +S +P+E +R L + Y ++ + +A E
Sbjct: 74 VFGKNVVEEPHE-VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATE 132
Query: 1328 KCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSAT 1387
L K+ V +S G + + R L+ R+ +LDE + +D
Sbjct: 133 IAGLG-------EKIKDRV----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 181
Query: 1388 DAILQRIIRQ-EFSNCTVITVAHRVPTV-IDSDMVMVLSYGKLLEYDEPSKLME 1439
+++I++Q T++ +H + V D + ++ G ++E +L E
Sbjct: 182 AREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 46/217 (21%), Positives = 90/217 (41%), Gaps = 38/217 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660
L+G++ +I+ + + G GAGK++ L I I SG V ++G I
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90
Query: 661 AYVSQTSWIQSG-SIRDNI-----LYGKPMD--KARYDKAIKACALDKDINNFDHGDLTE 712
+Y+ + + + + Y + ++A + L + I
Sbjct: 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK--------- 141
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTV 772
R S G +++ +ARA+ + + + D+P S +D A + A+ E T+
Sbjct: 142 --DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199
Query: 773 ILVTHQVEFLSEV----DRILVLEGGQITQSGNYQEL 805
++ +H + EV DRI ++ G I ++G +EL
Sbjct: 200 LVSSH---NMLEVEFLCDRIALIHNGTIVETGTVEEL 233
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 4e-15
Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 35/235 (14%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I+L + + + L ++ G GV+G +G+GK+TLI + L P GS
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 1274 ILIDGVDICSMGLKDLRV---KLSIIPQEPTLFRGSVRTNLD----PLGL--YSDDEIWK 1324
+L+DG ++ ++ +L ++ +I Q L S RT PL L DE+ +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLL--SSRTVFGNVALPLELDNTPKDEVKR 142
Query: 1325 ----ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEAN 1380
L L S P+ L S GQ+Q + R L ++L+ D+A
Sbjct: 143 RVTELLSLVGLGDKHDSYPSNL-----------SGGQKQRVAIARALASNPKVLLCDQAT 191
Query: 1381 ASIDSA-TDAILQ--RIIRQEFSNCTVITVAHRVPTVIDS--DMVMVLSYGKLLE 1430
+++D A T +IL+ + I + T++ + H + V+ D V V+S G+L+E
Sbjct: 192 SALDPATTRSILELLKDINRRL-GLTILLITHEM-DVVKRICDCVAVISNGELIE 244
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 71/242 (29%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI-LGEIPKISGTVNLYG-SIAYVSQT 666
I L V+L + Q V G+ GAGKS+L+ + L E P G+V + G + +S++
Sbjct: 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLSES 98
Query: 667 SW----------------IQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDL 710
+ S ++ N+ P++ K
Sbjct: 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVAL--PLELDNTPKD------------------ 138
Query: 711 TEIGQR--------GL---------NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753
E+ +R GL NLSGGQKQR+ +ARA+ ++ + L D SA+D
Sbjct: 139 -EVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 754 TAATLFNECVMAALEKK-------TVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQEL 805
T ++ L K T++L+TH+++ + + D + V+ G++ + E+
Sbjct: 198 TTRSIL------ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
Query: 806 LL 807
Sbjct: 252 FS 253
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 5e-15
Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 48/217 (22%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGS-----------I 660
+RGV+ I+ + + + G G+GK+++L I G E P G V + G +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT-KGDVWIGGKRVTDLPPQKRNV 89
Query: 661 AYVSQ--------TSWIQSGSIRDNILYG---KPMDKA-RYDKAIKACALDKDINNFDHG 708
V Q T + DN+ +G K + K + + +
Sbjct: 90 GLVFQNYALFQHMT-------VYDNVSFGLREKRVPKDEMDARVRELLRFMR-------- 134
Query: 709 DLTEIGQRGLN-LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767
L R + LSGGQ+QR+ LARA+ + LFD+PF+A+D L + +
Sbjct: 135 -LESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTF--VRQV 191
Query: 768 EKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSG 800
+ T + VTH Q E L DR+LVL G + Q G
Sbjct: 192 HDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFG 228
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 54/248 (21%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE ++ Y P ++G++ EG VG++G +GSGKTT++ + L P G +
Sbjct: 15 IEFVGVEKIY-PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLGL----YSDDEIWK----AL 1326
I G + + + V ++ Q LF+ +V N+ GL DE+ L
Sbjct: 74 IGGKRVTDLPPQKRNV--GLVFQNYALFQHMTVYDNV-SFGLREKRVPKDEMDARVRELL 130
Query: 1327 EKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSA 1386
+L++ + P++L S GQ+Q L R L R ++L+ DE +A
Sbjct: 131 RFMRLESYANRFPHEL-----------SGGQQQRVALARALAPRPQVLLFDEPF----AA 175
Query: 1387 TDAIL----QRIIR--QEFSNCTVITVAHRVPTVID-------SDMVMVLSYGKLLE--- 1430
D + + +R + T + V H D +D V+VL G + +
Sbjct: 176 IDTQIRRELRTFVRQVHDEMGVTSVFVTH------DQEEALEVADRVLVLHEGNVEQFGT 229
Query: 1431 ----YDEP 1434
Y++P
Sbjct: 230 PEEVYEKP 237
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 1e-14
Identities = 61/218 (27%), Positives = 95/218 (43%), Gaps = 43/218 (19%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG-EIPKISGTVNLYGS-----------I 660
L ++L ++ + + G GAGK+ L I G +P SG + L G I
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLSPEKHDI 74
Query: 661 AYVSQ--------TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
A+V Q ++ N+ +G M K + K + +
Sbjct: 75 AFVYQNYSLFPHMN-------VKKNLEFGMRMKKIKDPKRVLD-TARD-------LKIEH 119
Query: 713 IGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKK- 770
+ R L LSGG++QR+ LARA+ + I L D+P SA+D T ++ L KK
Sbjct: 120 LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM--LSVLHKKN 177
Query: 771 --TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
TV+ +TH Q E DRI V+ G++ Q G +E+
Sbjct: 178 KLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 7e-04
Identities = 57/254 (22%), Positives = 100/254 (39%), Gaps = 48/254 (18%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+ L ++ L ++ G ++G TG+GKT + + P G IL
Sbjct: 2 IEIESLSRKW---KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF-RGSVRTNLD-PL---GLYSDDEIWKALEKCQ 1330
+DG D+ L + ++ + Q +LF +V+ NL+ + + + +
Sbjct: 59 LDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 1331 LKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAI 1390
++ + P L S G++Q L R L+ +IL+LDE SA D
Sbjct: 117 IEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPL----SALDPR 161
Query: 1391 LQRIIRQEFSN------CTVITVAHRVPTVID-------SDMVMVLSYGKLLEYDEPSKL 1437
Q R+ S TV+ + H D +D + V+ GKL++ +P ++
Sbjct: 162 TQENAREMLSVLHKKNKLTVLHITH------DQTEARIMADRIAVVMDGKLIQVGKPEEI 215
Query: 1438 MET-NSSFSKLVAE 1450
E VA
Sbjct: 216 FEKPVEGR---VAS 226
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 57/228 (25%)
Query: 607 ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYG------ 658
E I L+ VNL+IK + +++ G G+GKS++L I+G + P G V +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPT-EGEVYIDNIKTNDL 72
Query: 659 -----------SIAYVSQT-SWIQSGSIRDNI----LYGKPMD---KARYDKAIKACALD 699
I +V Q + I + +N+ ++ + R +A++ L
Sbjct: 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC--LK 130
Query: 700 KDINNFDHGDLTEIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754
E+ +R N LSGGQ+QR+ +ARA+ N+ I L D P A+D+ T
Sbjct: 131 M----------AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKT 180
Query: 755 AATLFNECVMAALEK------KTVILVTHQVEFLSEVDRILVLEGGQI 796
+M L+K KTV++VTH + +RI+ L+ G++
Sbjct: 181 GEK-----IMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 47/217 (21%), Positives = 95/217 (43%), Gaps = 37/217 (17%)
Query: 1216 IELRQLKIRYR--PNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
++L+ + Y+ LK + EG V ++G +GSGK+T+++ + L +P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1274 ILIDGVDICSMGLKDL----RVKLSIIPQEPTLF-RGSVRTNLD-PLGLYSDDE------ 1321
+ ID + + +L R K+ + Q+ L + N++ PL ++
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPL-IFKYRGAMSGEE 120
Query: 1322 ----IWKALEKCQLKTTISS-LPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVL 1376
+ L+ +L+ ++ PN+L S GQ+Q + R L I++
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQL-----------SGGQQQRVAIARALANNPPIILA 169
Query: 1377 DEANASIDSATD----AILQRIIRQEFSNCTVITVAH 1409
D+ ++DS T +L+++ ++ TV+ V H
Sbjct: 170 DQPTWALDSKTGEKIMQLLKKLNEED--GKTVVVVTH 204
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 64/232 (27%), Positives = 98/232 (42%), Gaps = 60/232 (25%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYGS------- 659
L +NL IK + +A+ G G+GKS+LLY I G + SG +
Sbjct: 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT--SGKIYFDEKDVTELPP 72
Query: 660 ----IAYVSQTSWIQS------GSIRDNILYG---KPMDKARYDKAIKACALDKDINNFD 706
+ V Q+ ++ NI + + + DK ++ A I+
Sbjct: 73 KDRNVGLV-----FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKL- 126
Query: 707 HGDLTEIGQRGLN-----LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----HTAAT 757
LN LSGGQ+QR+ +ARA+ + ++ L D+P S +DA A
Sbjct: 127 -----------LNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAE 175
Query: 758 LFNECVMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
L L+K+ T + VTH Q E L+ DRI V+ G+I Q G E+
Sbjct: 176 L------KRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 68.6 bits (169), Expect = 1e-12
Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 28/174 (16%)
Query: 1217 ELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276
E++ L + Y A +KGI G V ++G G+GKTT +SA+ LV G I+
Sbjct: 8 EVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 1277 DGVDICSMGLK-DLRVKLSII--PQEPTLFRG-SVRTNLDPLGLY---SDDEIWKALEKC 1329
+G DI + ++ I P+ +F +V NL +G Y + I + LE
Sbjct: 66 NGQDI--TNKPAHVINRMGIALVPEGRRIFPELTVYENLM-MGAYNRKDKEGIKRDLEWI 122
Query: 1330 -----QLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDE 1378
+LK + L L S G++Q+ +GR L+ R ++L++DE
Sbjct: 123 FSLFPRLKERLKQLGGTL-----------SGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 7e-10
Identities = 55/229 (24%), Positives = 89/229 (38%), Gaps = 50/229 (21%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-SIAYVSQTS 667
AI ++G++L + Q + + G+ GAGK++ L AI G + G + G I
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 668 WIQSG--------------SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE- 712
+ G ++ +N++ G R DK L+ + F L E
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYN---RKDKEGIKRDLEWIFSLFPR--LKER 132
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDP------------FSAVDAHTAATLFN 760
+ Q G LSGG++Q + + RA+ + + + D+P F + N
Sbjct: 133 LKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK------IN 186
Query: 761 ECVMAALEKKTVILV---THQVEFLSEVDRILVLEGGQITQSGNYQELL 806
+ E T++LV L VLE GQI G ELL
Sbjct: 187 Q------EGTTILLVEQNALGA--LKVAHYGYVLETGQIVLEGKASELL 227
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 1e-12
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 9/92 (9%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNE--CVMAAL--EKKTVILV 775
LSGGQ+QR+ +ARA+ + D+ LFD+P SA+D L E +M L E KT+++V
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE----LVGEVLRIMQQLAEEGKTMVVV 209
Query: 776 THQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
TH++ F V ++ L G+I + G+ +++
Sbjct: 210 THEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 8e-09
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ + L RY + VLKG++ G + ++G +GSGK+T + + L +P+ G+I+
Sbjct: 7 LHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64
Query: 1276 IDGVDICSMGLKDLRVK 1292
++G +I + KD ++K
Sbjct: 65 VNGQNINLVRDKDGQLK 81
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 1e-12
Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 48/226 (21%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYGS------- 659
+ + GV+ ++K + +A+ G G GK++ L + G + SG +
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT--SGEIYFDDVLVNDIPP 72
Query: 660 ----IAYVSQTSWIQS------GSIRDNILYG---KPMDKARYDKAIKACA--LDKDINN 704
+ V Q+ ++ +NI + + + K +K + A L
Sbjct: 73 KYREVGMV-----FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLL----- 122
Query: 705 FDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV 763
+ + R LSGGQ+QR+ LARA+ + LFD+P S +DA+ + E
Sbjct: 123 -----IDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAE-- 175
Query: 764 MAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
+ L+++ T + VTH Q E ++ RI V G++ Q G E+
Sbjct: 176 IKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 3e-12
Identities = 64/235 (27%), Positives = 102/235 (43%), Gaps = 60/235 (25%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAI--L-----GEIPKISGT-VNLYGS- 659
+ +R ++L++K + + + G G GK++ L I L G+I I V
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI-YIGDKLVADPEKG 73
Query: 660 ---------IAYVSQTSWIQS------GSIRDNILYG---KPMDKARYDKAIKACA--LD 699
IA V QS ++ DNI + + + + D+ ++ A L
Sbjct: 74 IFVPPKDRDIAMV-----FQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG 128
Query: 700 KDINNFDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----HT 754
LTE+ R LSGGQ+QR+ L RA+ ++L D+P S +DA
Sbjct: 129 ----------LTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 755 AATLFNECVMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
A L L+++ T I VTH QVE ++ DRI V+ G + Q G+ E+
Sbjct: 179 RAEL------KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 3e-12
Identities = 64/230 (27%), Positives = 98/230 (42%), Gaps = 56/230 (24%)
Query: 609 AIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG--EIPKISGTVNLYGS------- 659
+ +NL IK + + + G G GK++ L I G E G +
Sbjct: 23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT--EGRIYFGDRDVTYLPP 80
Query: 660 ----IAYVSQTSWIQS------GSIRDNILYG---KPMDKARYDKAIKACA--LDKDINN 704
I+ V QS ++ +NI + K K DK ++ A L
Sbjct: 81 KDRNISMV-----FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ----- 130
Query: 705 FDHGDLTEIGQRG-LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----HTAATLF 759
+ E+ R LSGGQ+QR+ +ARA+ + D+ L D+P S +DA A +
Sbjct: 131 -----IEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI- 184
Query: 760 NECVMAALEKK---TVILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
L++K T I VTH QVE ++ DRI V+ GQ+ Q G+ E+
Sbjct: 185 -----KKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 8e-12
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 9/92 (9%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNEC--VMAALEKK--TVILV 775
LSGGQ QR+ +ARA+ + I LFD+P SA+D + E VM L + T+++V
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE----MVGEVLSVMKQLANEGMTMVVV 215
Query: 776 THQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
TH++ F EV DR+L ++GG I + G ++L
Sbjct: 216 THEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 6e-09
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I++ QLK + VLKGI EG V V+G +GSGK+T + L L + G I+
Sbjct: 25 IDVHQLKKSFGSLE--VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 82
Query: 1276 IDGVDI 1281
IDG+++
Sbjct: 83 IDGINL 88
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 6e-10
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 14/94 (14%)
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA----HTAATLFNECVMAALEKK---TV 772
LSGGQ+QR+ + R + + ++L D+P S +DA + + L K+ T+
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI------SRLHKRLGRTM 187
Query: 773 ILVTH-QVEFLSEVDRILVLEGGQITQSGNYQEL 805
I VTH QVE ++ D+I+VL+ G++ Q G EL
Sbjct: 188 IYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 2e-09
Identities = 46/336 (13%), Positives = 89/336 (26%), Gaps = 90/336 (26%)
Query: 1179 NYIISVERIKQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGITC 1238
NY + IK P + ++R + + + R L L+
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRL---YNDNQVFAKYNV-SRLQPYLKLRQALL 145
Query: 1239 TFSEGTRVGVVGRTGSGKTTLISALFR----LVEPAGG-------------SILIDGVDI 1281
V + G GSGKT + + + ++L +
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 1282 CSMGLKDLRVKLSIIPQEP-----------TLFRGSVRTN----LDPLGLYSDDEIWKAL 1326
+ + L + N L + + + W A
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---QNAKAWNAF 262
Query: 1327 E-KCQ-LKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASI- 1383
C+ L TT V+D + + LD + ++
Sbjct: 263 NLSCKILLTT-------RFKQVTD----------------FLSAATTTHISLDHHSMTLT 299
Query: 1384 DSATDAILQRIIRQEFSN-----CTVITVAHRVPTVID------SDMVMVLSYGKLLEYD 1432
++L + + + T P + D + K + D
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTN------PRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 1433 EPSKLMETNSSFSKLV-AEYWSSCRRNSYQNLNNFQ 1467
+ + ++E SS + L AEY R + L+ F
Sbjct: 354 KLTTIIE--SSLNVLEPAEY-----RKMFDRLSVFP 382
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 4e-08
Identities = 84/596 (14%), Positives = 166/596 (27%), Gaps = 174/596 (29%)
Query: 459 TSEI-LNNMKIIKLQSWEEKFKSLIESRREKEF--KWLSEAQLRKAYGTVIYWMSPTIIS 515
T E I L +E+ F + + ++ LS+ ++ S +S
Sbjct: 11 TGEHQYQYKDI--LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM------SKDAVS 62
Query: 516 SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPV--RMIPEALSIMIQVKVSFDRIN-AF 572
+ L TL S E + + + E L RIN F
Sbjct: 63 GTLRL------------------FWTLLSKQEEMVQKFVEEVL-----------RINYKF 93
Query: 573 LLD--HELNNDDVRRISLQKSDRSVKIQEGN--FS----WDPELAIPTLRGVNLDIKWAQ 624
L+ + R ++ N F+ + LR L+++ A+
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQP-YLKLRQALLELRPAK 151
Query: 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIR--DNILYGK 682
+ + G +G+GK+ + + + I W+ + + +L +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQC---KMDFKIF------WLNLKNCNSPETVL--E 200
Query: 683 PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQ-RIQLARAVYNDADIY 741
+ K Y +D + + L + Q + R L Y + +
Sbjct: 201 MLQKLLYQ-------IDPNWTSRSDHSSNIK----LRIHSIQAELRRLLKSKPYENCLLV 249
Query: 742 LFDDPFSA--VDAHTAATLFN-ECVMAALEKKTVIL-----VTHQVEFLSEVDRILVLEG 793
L + +A +A FN C K ++ VT + + L
Sbjct: 250 L-LNVQNAKAWNA------FNLSC-------KILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 794 GQITQSGNYQELLL--AGTAFEQLVNAHRDAITGLGPL----------------DNAGQG 835
+T + LLL + L R+ +T P DN
Sbjct: 296 MTLTPD-EVKSLLLKYLDCRPQDL---PREVLTT-NPRRLSIIAESIRDGLATWDNWKHV 350
Query: 836 GAEKVEKGRTA-----RPEEPN------GIYPRKESSEGEISVKGL----TQLTEDEEME 880
+K+ + P E ++P S+ I L + + + M
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--PSA--HIPTILLSLIWFDVIKSDVMV 406
Query: 881 IGDVGWKPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIPKITS--GILI 938
+ ++ L + + + + L +++ + ++
Sbjct: 407 V--------VNKL-HKYSL-VEKQPKESTISIPSIY------LELKVKLENEYALHRSIV 450
Query: 939 GVYAGVS-------TASAVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFD 987
Y + YF S HL + F M+F D
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-------RMVFLD 499
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 2e-05
Identities = 78/467 (16%), Positives = 140/467 (29%), Gaps = 140/467 (29%)
Query: 77 GIAYL--GYC---------LWNLIAKNDSSMSWLVSTVRGLIWVSLAISLLVKRSK-WIR 124
I +L C L L+ + D + + S I L + + +R
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-------SSNIKLRIHSIQAELR 235
Query: 125 MLITLWWMSFSLLVL----------ALNIE--ILARTYTINVVYILPLPVNLLLLFSAFR 172
L+ LLVL A N+ IL T V L +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL-----------SAA 284
Query: 173 NFSHFTSPNREDKSLSEPLLAEKNQTELGKAGLLRKLTFSWIN------PLLSLGYSKPL 226
+H + + +L+ + + LL K +++ P L + P
Sbjct: 285 TTTHISL-DHHSMTLTPD------EVK----SLLLK----YLDCRPQDLPREVLTTN-PR 328
Query: 227 ALEDIPSLVPEDEASFAYQKFAYAWDSL--VRENNSNN-NGNLVRKVITNVYLKENIF-- 281
L I + + A++ K D L + E++ N RK ++ + ++F
Sbjct: 329 RLSIIAESIRDGLATWDNWKH-VNCDKLTTIIESSLNVLEPAEYRK----MFDRLSVFPP 383
Query: 282 ---I---AICALLRTIAVVVGPLLLYAFVNYS--NRGEENLQEGLSIVGCLIITKV-VES 332
I + + + +++ YS + + +SI + KV +E+
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST--ISIPSIYLELKVKLEN 441
Query: 333 FTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFP 392
H R +V Y + S I Y+ D Y F
Sbjct: 442 EYALH-----RS---------IVDHYNIP-------KTFDSDDLIPPYL--DQY----F- 473
Query: 393 FWF---HLT-------WSLALQLFLAIGVLFGVVGLGA---LPGLVLFLICGLLNVPFAK 439
+ HL +L +FL F L +LN
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFR--F----LEQKIRHDSTAWNASGSILNT---- 523
Query: 440 ILQ--KCQSEFMIAQDERL-RSTSEILNNMKIIKLQSWEEKFKSLIE 483
LQ K ++ D + R + IL+ + I+ K+ L+
Sbjct: 524 -LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 2e-07
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 698 LDKDINNFDHGDLTEIGQRGLN-LSGGQKQRIQLA------RAVYNDADIYLFDDPFSAV 750
+ + N + E +R L LSGG++ + LA + + + + D+P +
Sbjct: 226 VRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYL 285
Query: 751 DAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792
D L + VILV+H E D ++ +
Sbjct: 286 DEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 327
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 3e-06
Identities = 45/233 (19%), Positives = 89/233 (38%), Gaps = 42/233 (18%)
Query: 1231 LVLKGITCTF-------------SEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILID 1277
L + I F ++G ++G GSGK+TLI+ + ++ G + +
Sbjct: 8 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 67
Query: 1278 GVDICSMGLK-DLRVKLSIIP--QEPTLFRG-SV------------RTNLDPLGLYSDDE 1321
DI + I+ Q P + +V + L+ L
Sbjct: 68 NKDIT--NKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKK--- 122
Query: 1322 IWKALEKCQLKTTISSLPN-KLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEAN 1380
W E+ ++ L KL + S GQ +L +GR L+ +++V+DE
Sbjct: 123 -WIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPI 181
Query: 1381 ASIDSA-TDAILQRI--IRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLL 1429
A + I + ++ + T + + HR+ V++ D + V+ G+++
Sbjct: 182 AGVAPGLAHDIFNHVLELKAK--GITFLIIEHRLDIVLNYIDHLYVMFNGQII 232
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQ 778
LSGGQ + +++ RA+ + + + D+P + V A +FN + + T +++ H+
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
Query: 779 VEFLSEV-DRILVLEGGQI 796
++ + D + V+ GQI
Sbjct: 213 LDIVLNYIDHLYVMFNGQI 231
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 3e-05
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 12/52 (23%)
Query: 450 IAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESR----REKEFKWLSEAQ 497
IAQ +RL E ++ W E+ + ++ + E +W +A+
Sbjct: 74 IAQADRLTQEPE--------SIRKWREEQRKRLQELDAASKVMEQEWREKAK 117
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 6e-05
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 16/98 (16%)
Query: 713 IGQRGLNLSGGQKQRIQLA------RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAA 766
+ LSGG++ + LA + + + + D+P +D L +M
Sbjct: 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT--IMER 108
Query: 767 LEKK--TVILVTHQVEFLSEVDRILVLE------GGQI 796
KK VILV+H E D ++ + ++
Sbjct: 109 YLKKIPQVILVSHDEELKDAADHVIRISLENGSSKVEV 146
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1467 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-68 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-59 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-65 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-53 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-64 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-56 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-59 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-53 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-58 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-50 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-56 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 7e-50 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-31 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-30 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-29 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-29 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-29 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-28 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-22 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-28 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-26 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-24 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-27 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 7e-25 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 6e-26 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-24 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 7e-26 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 8e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 8e-25 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 8e-25 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-24 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 9e-24 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-23 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-21 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 8e-20 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-16 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-16 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 4e-14 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-09 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.003 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 3e-07 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 6e-05 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 0.002 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.002 | |
| d2qm8a1 | 323 | c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo | 0.002 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 228 bits (584), Expect = 2e-68
Identities = 69/238 (28%), Positives = 126/238 (52%), Gaps = 1/238 (0%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
+GRI++ + +Y N +LK I + +G V VG +G GK+TLI+ + R + G
Sbjct: 14 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 73
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL-DPLGLYSDDEIWKALEKCQL 1331
ILIDG +I LR ++ ++ Q+ LF +V+ N+ +D+E+ +A +
Sbjct: 74 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANA 133
Query: 1332 KTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAIL 1391
I +LP D+ V + G S GQ+Q + R+ L IL+LDEA +++D +++I+
Sbjct: 134 HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 193
Query: 1392 QRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449
Q + + T + VAHR+ T+ +D ++V+ G ++E +L+ ++ L +
Sbjct: 194 QEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYS 251
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 202 bits (516), Expect = 2e-59
Identities = 69/245 (28%), Positives = 123/245 (50%), Gaps = 16/245 (6%)
Query: 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI 647
++ + I +F + + P L+ +NL I+ + +A G G GKS+L+ I
Sbjct: 10 IEIKQGRIDIDHVSFQY-NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 648 PKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPM-DKARYDKAI 693
SG + + G I V Q + + S ++++NIL G+P +A
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 694 KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH 753
K I N G TE+G+RG+ LSGGQKQR+ +AR N+ I + D+ SA+D
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 754 TAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFE 813
+ + + E + + +T ++V H++ ++ D+I+V+E G I ++G ++EL+ A+E
Sbjct: 189 SESIIQ-EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYE 247
Query: 814 QLVNA 818
L +
Sbjct: 248 HLYSI 252
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 220 bits (561), Expect = 5e-65
Identities = 95/262 (36%), Positives = 143/262 (54%), Gaps = 7/262 (2%)
Query: 558 IMIQVKVSFDRINAFLLDHELNNDDVRRISLQKSDRSVKIQEGNFSWDPELAIPTLRGVN 617
IM V ++ LL+ ++ R+ S +++ S + P L+ +N
Sbjct: 4 IMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFS----HLCLVGN---PVLKNIN 56
Query: 618 LDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDN 677
L+I+ + +A+ GS G+GK+SLL ILGE+ G + G +++ SQ SWI G+I++N
Sbjct: 57 LNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKEN 116
Query: 678 ILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYND 737
I++G D+ RY +KAC L +DI F D T +G+ G+ LSGGQ+ RI LARAVY D
Sbjct: 117 IIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD 176
Query: 738 ADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQIT 797
AD+YL D PF +D T +F CV + KT ILVT ++E L + D+IL+L G
Sbjct: 177 ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSY 236
Query: 798 QSGNYQELLLAGTAFEQLVNAH 819
G + EL F + +
Sbjct: 237 FYGTFSELQSLRPDFSSKLMGY 258
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 187 bits (475), Expect = 2e-53
Identities = 57/276 (20%), Positives = 110/276 (39%), Gaps = 26/276 (9%)
Query: 1182 ISVERI-----KQFMHIPPEPPAIVEDKRPPSSWPFKGRIELRQLKIRYRPNAPLVLKGI 1236
I +E + + F + + D+ + + L + P VLK I
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDR---KHSSDENNVSFSHLCLVGNP----VLKNI 55
Query: 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSII 1296
+G + + G TGSGKT+L+ + +E + G I G ++S
Sbjct: 56 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFC 102
Query: 1297 PQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAG 1356
Q + G+++ N+ Y + ++ CQL+ I+ + ++ + + G S G
Sbjct: 103 SQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGG 162
Query: 1357 QRQLFCLGRVLLKRNRILVLDEANASIDSAT-DAILQRIIRQEFSNCTVITVAHRVPTVI 1415
QR L R + K + +LD +D T + + + + + +N T I V ++ +
Sbjct: 163 QRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR 222
Query: 1416 DSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEY 1451
+D +++L G Y S+L FS + Y
Sbjct: 223 KADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGY 258
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 216 bits (551), Expect = 5e-64
Identities = 70/238 (29%), Positives = 124/238 (52%), Gaps = 2/238 (0%)
Query: 1213 KGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG 1272
G +E R + Y L+ I G V +VGR+GSGK+T+ S + R + G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 1273 SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTN--LDPLGLYSDDEIWKALEKCQ 1330
IL+DG D+ L LR +++++ Q LF +V N YS ++I +A
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 1331 LKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAI 1390
I+ + N LD+ + + G S GQRQ + R LL+ + IL+LDEA +++D+ ++
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 1391 LQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 1448
+Q + + N T + +AHR+ T+ +D ++V+ G ++E S+L+ + +++L
Sbjct: 191 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLH 248
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 195 bits (496), Expect = 1e-56
Identities = 63/246 (25%), Positives = 120/246 (48%), Gaps = 17/246 (6%)
Query: 588 LQKSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEI 647
+ ++ ++ + F++ +P LR +NL I + +A+ G G+GKS++ I
Sbjct: 7 IDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 65
Query: 648 PKISGTVNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKA 692
G + + G +A VSQ + + ++ +NI Y + + + ++A
Sbjct: 66 DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA 125
Query: 693 IKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752
+ IN D+G T IG+ G+ LSGGQ+QRI +ARA+ D+ I + D+ SA+D
Sbjct: 126 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 185
Query: 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAF 812
+ + + + +T +++ H++ + + D I+V+E G I + G + ELL +
Sbjct: 186 ESERAIQ-AALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVY 244
Query: 813 EQLVNA 818
QL
Sbjct: 245 AQLHKM 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 201 bits (513), Expect = 4e-59
Identities = 67/245 (27%), Positives = 125/245 (51%), Gaps = 7/245 (2%)
Query: 1210 WPFKGRIELRQLKIRY--RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLV 1267
+G ++ + + Y RP+ VL+G+T T G +VG GSGK+T+ + L L
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVL-VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64
Query: 1268 EPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL--DPLGLYSDDEIWKA 1325
+P GG +L+DG + + L +++ + QEP +F S++ N+ + +EI A
Sbjct: 65 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAA 124
Query: 1326 LEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDS 1385
K + IS LP D+ V + G S GQRQ L R L+++ +L+LD+A +++D+
Sbjct: 125 AVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 184
Query: 1386 ATDAILQRIIR--QEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSS 1443
+ +++++ E + +V+ + + V +D ++ L G + E +LME
Sbjct: 185 NSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGC 244
Query: 1444 FSKLV 1448
+ +V
Sbjct: 245 YWAMV 249
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 185 bits (470), Expect = 3e-53
Identities = 60/241 (24%), Positives = 109/241 (45%), Gaps = 16/241 (6%)
Query: 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT 653
V+ Q+ +F++ + L+G+ ++ + A+ G G+GKS++ + G
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70
Query: 654 VNLYG-------------SIAYVSQTSWIQSGSIRDNILYGKPMDKARYD--KAIKACAL 698
+ L G +A V Q + S+++NI YG + A
Sbjct: 71 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 699 DKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATL 758
I+ G TE+ + G LSGGQ+Q + LARA+ + + DD SA+DA++ +
Sbjct: 131 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 190
Query: 759 FNECVMAALEK-KTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
+ ++V+L+T + + + D IL LEGG I + G +Q+L+ + +V
Sbjct: 191 EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQ 250
Query: 818 A 818
A
Sbjct: 251 A 251
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 197 bits (503), Expect = 7e-58
Identities = 71/235 (30%), Positives = 128/235 (54%), Gaps = 2/235 (0%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
I R ++ RY+P++P++L I + +G +G+VGR+GSGK+TL + R P G +L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNL-DPLGLYSDDEIWKALEKCQLKTT 1334
IDG D+ LR ++ ++ Q+ L S+ N+ S +++ A +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1335 ISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRI 1394
IS L ++ V ++G S GQRQ + R L+ +IL+ DEA +++D ++ ++ R
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1395 IRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMET-NSSFSKLV 1448
+ + TVI +AHR+ TV ++D ++V+ GK++E + +L+ S +S L
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 174 bits (443), Expect = 8e-50
Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 17/242 (7%)
Query: 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654
+ + F + P+ L +NL IK + I + G G+GKS+L I +G V
Sbjct: 2 ITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 655 NLYG-------------SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDK 700
+ G + V Q + + + SI DNI P M + A K
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
I+ G T +G++G LSGGQ+QRI +ARA+ N+ I +FD+ SA+D + +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 761 ECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVNAH 819
+ + +TVI++ H++ + DRI+V+E G+I + G ++ELL + + L
Sbjct: 181 N-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Query: 820 RD 821
D
Sbjct: 240 SD 241
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 194 bits (494), Expect = 2e-56
Identities = 66/237 (27%), Positives = 136/237 (57%), Gaps = 3/237 (1%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ R + Y ++ +L+ I+ + + G +G GK+T+ S L R +P G I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLD--PLGLYSDDEIWKALEKCQLKT 1333
IDG I ++ L++ R ++ + Q+ + G++R NL G Y+D+++W+ L+ ++
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1334 TISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQR 1393
+ ++P++L++ V + G S GQRQ + R L+ +IL+LDEA AS+DS +++++Q+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1394 IIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAE 1450
+ T + +AHR+ T++D+D + + G++ + ++L+ T+ ++K V+E
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 175 bits (444), Expect = 7e-50
Identities = 57/232 (24%), Positives = 114/232 (49%), Gaps = 18/232 (7%)
Query: 601 NFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-- 658
+F++D LR ++ + + IA G G GKS++ + +G + + G
Sbjct: 8 DFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65
Query: 659 -----------SIAYVSQTSWIQSGSIRDNILYG--KPMDKARYDKAIKACALDKDINNF 705
I +VSQ S I +G+IR+N+ YG + + + N
Sbjct: 66 IDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 706 DHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMA 765
TE+G+RG+ +SGGQ+QR+ +ARA + I + D+ +++D+ + + + + +
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK-ALDS 184
Query: 766 ALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817
++ +T +++ H++ + + D+I +E GQIT SG + EL+ + + V+
Sbjct: 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 121 bits (305), Expect = 2e-31
Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 27/240 (11%)
Query: 1216 IELRQLKIRYRPNAPLV--LKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I+L + + + L ++ G GV+G +G+GK+TLI + L P GS
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1274 ILIDGVDICSMGLKD---LRVKLSIIPQEPTLF-RGSVRTNLD-PLGLY--SDDEIWK-- 1324
+L+DG ++ ++ + R ++ +I Q L +V N+ PL L DE+ +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1325 --ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANAS 1382
L L S P+ L S GQ+Q + R L ++L+ DEA ++
Sbjct: 122 TELLSLVGLGDKHDSYPSNL-----------SGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1383 IDSATDAILQRIIR--QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
+D AT + +++ T++ + H + V D V V+S G+L+E D S++
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 109 bits (273), Expect = 4e-27
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 37/228 (16%)
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658
I L V+L + Q V G+ GAGKS+L+ + G+V + G
Sbjct: 13 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL 72
Query: 659 ----------SIAYVSQT-SWIQSGSIRDNI-----LYGKPMD--KARYDKAIKACALDK 700
I + Q + + S ++ N+ L P D K R + + L
Sbjct: 73 SESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD 132
Query: 701 DINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFN 760
+++ NLSGGQKQR+ +ARA+ ++ + L D+ SA+D T ++
Sbjct: 133 KHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 761 ECV-MAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ T++L+TH+++ + + D + V+ G++ + E+
Sbjct: 182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 119 bits (299), Expect = 1e-30
Identities = 44/231 (19%), Positives = 99/231 (42%), Gaps = 15/231 (6%)
Query: 1216 IELRQLKIRYRPNAPL--VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
I+L+ + Y+ + LK + EG V ++G +GSGK+T+++ + L +P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1274 ILIDGVDICSMGLKDL----RVKLSIIPQEPTLF-RGSVRTNLD---PLGLYSDDEIWKA 1325
+ ID + + +L R K+ + Q+ L + N++ +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1326 LEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDS 1385
++ ++ L + + ++ S GQ+Q + R L I++ D+ ++DS
Sbjct: 122 RKRALECLKMAELEERFANHKPNQ---LSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 1386 ATDAILQRIIR--QEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEP 1434
T + ++++ E TV+ V H + + ++ L G++ ++
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 114 bits (286), Expect = 7e-29
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 23/217 (10%)
Query: 605 DPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------ 658
E I L+ VNL+IK + +++ G G+GKS++L I G V +
Sbjct: 13 MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDL 72
Query: 659 -----------SIAYVSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFD 706
I +V Q + I + +N+ P+ + +
Sbjct: 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL--PLIFKYRGAMSGEERRKRALECLK 130
Query: 707 HGDLTE--IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV- 763
+L E + LSGGQ+QR+ +ARA+ N+ I L D P A+D+ T +
Sbjct: 131 MAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 764 MAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSG 800
+ + KTV++VTH + +RI+ L+ G++ +
Sbjct: 191 LNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 116 bits (293), Expect = 1e-29
Identities = 55/235 (23%), Positives = 104/235 (44%), Gaps = 26/235 (11%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
++L L R+ + + T +G + ++G +G GKTT + + L EP G I
Sbjct: 7 VKLENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLD-PLGLY--SDDEIWK----ALE 1327
D+ L +S++ Q ++ +V N+ PL + DEI K A E
Sbjct: 65 FGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE 122
Query: 1328 KCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSAT 1387
Q++ ++ P +L S GQRQ + R ++ +L++DE +++D+
Sbjct: 123 LLQIEELLNRYPAQL-----------SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL 171
Query: 1388 DAILQRIIR--QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
++ I+ Q+ T I V H + D + V++ G+LL+ P+++
Sbjct: 172 RVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 116 bits (292), Expect = 1e-29
Identities = 55/215 (25%), Positives = 93/215 (43%), Gaps = 32/215 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661
+ +NL IK + + + G G GK++ L I G G + +I+
Sbjct: 22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 81
Query: 662 YVSQTSWIQSG-SIRDNI-----LYGKPMDKA--RYDKAIKACALDKDINNFDHGDLTEI 713
V Q+ + ++ +NI + P D+ R A + +++ +N +
Sbjct: 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------ 135
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTV 772
LSGGQ+QR+ +ARA+ + D+ L D+P S +DA + E + K T
Sbjct: 136 -----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 190
Query: 773 ILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
I VTH + DRI V+ GQ+ Q G+ E+
Sbjct: 191 IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 225
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 113 bits (285), Expect = 1e-28
Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 20/210 (9%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTV---------------NLY 657
++G++L + Q + + G+ GAGK++ L AI G + G + N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 658 GSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRG 717
G ++ +N++ G K + + + Q G
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE----RLKQLG 137
Query: 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTH 777
LSGG++Q + + RA+ + + + D+P + + +F E T++LV
Sbjct: 138 GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQ 197
Query: 778 QVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+V VLE GQI G ELL
Sbjct: 198 NALGALKVAHYGYVLETGQIVLEGKASELL 227
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 96.1 bits (239), Expect = 1e-22
Identities = 54/230 (23%), Positives = 104/230 (45%), Gaps = 14/230 (6%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+E++ L + Y +KGI G V ++G G+GKTT +SA+ LV G I+
Sbjct: 7 LEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1276 IDGVDICSMGLKDLRVK-LSIIPQEPTLF-RGSVRTNL--DPLGLYSDDEIWKALEKCQL 1331
+G DI + + ++++P+ +F +V NL + I + LE
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW--- 121
Query: 1332 KTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID-SATDAI 1390
I SL +L + G S G++Q+ +GR L+ R ++L++DE + + +
Sbjct: 122 ---IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 1391 LQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
+ I + T++ V + + VL G+++ + S+L++
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 113 bits (284), Expect = 2e-28
Identities = 54/251 (21%), Positives = 105/251 (41%), Gaps = 40/251 (15%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
++ + L RY + VLKG++ G + ++G +GSGK+T + + L +P+ G+I
Sbjct: 2 KLHVIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1275 LIDGVDICSMGLKD-------------LRVKLSIIPQEPTLFRGSVRTNLDPLGLY---- 1317
+++G +I + KD LR +L+++ Q L+ S T L+ +
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW--SHMTVLENVMEAPIQV 117
Query: 1318 -------SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKR 1370
+ + K L K + + S GQ+Q + R L
Sbjct: 118 LGLSKHDARERALKYLAKVG-------IDERAQGKYPVH---LSGGQQQRVSIARALAME 167
Query: 1371 NRILVLDEANASIDSAT-DAILQRIIRQEFSNCTVITVAHRVPTVID-SDMVMVLSYGKL 1428
+L+ DE +++D +L+ + + T++ V H + S V+ L GK+
Sbjct: 168 PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227
Query: 1429 LEYDEPSKLME 1439
E +P ++
Sbjct: 228 EEEGDPEQVFG 238
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 108 bits (271), Expect = 1e-26
Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 46/230 (20%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L+GV+L + I++ GS G+GKS+ L I G + + G
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 659 ------------SIAYVSQ-TSWIQSGSIRDNILYG--------KPMDKARYDKAIKACA 697
+ V Q + ++ +N++ K + R K +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVG 137
Query: 698 LDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAAT 757
+D+ + ++LSGGQ+QR+ +ARA+ + D+ LFD+P SA+D
Sbjct: 138 IDERAQG----------KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 187
Query: 758 LFNECVMAALEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+ A E KT+++VTH++ F V ++ L G+I + G+ +++
Sbjct: 188 VLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 112 bits (281), Expect = 5e-28
Identities = 48/231 (20%), Positives = 99/231 (42%), Gaps = 25/231 (10%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L GV++ + + G G+GKS+L+ I G + G V
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 659 SIAYVSQT-SWIQSGSIRDNILYG------KPMDKARYDKAI--KACALDKDINNFDHGD 709
I QT ++ ++ +N+L G P++ Y K I + ++K +
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 710 LTEIG-QRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE 768
L+ + ++ LSGGQ + +++ RA+ + + + D+P + V A +FN + +
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 769 KKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818
T +++ H+++ + D + V+ GQI G +E + + ++V
Sbjct: 200 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEI 250
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 100 bits (250), Expect = 6e-24
Identities = 45/249 (18%), Positives = 98/249 (39%), Gaps = 15/249 (6%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ + + L G++ + ++G ++G GSGK+TLI+ + ++ G +
Sbjct: 5 LRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 1276 IDGVDICSMGLKDL-RVKLSIIPQEPTLF-RGSVRTNLDPLGLYSDDEIWKALEKCQLKT 1333
+ DI + +L + Q P +V NL + + +L +
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 1334 TISSLPNK---------LDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID 1384
+ K L + S GQ +L +GR L+ +++V+DE A +
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182
Query: 1385 SATDAILQRIIRQ-EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMETNS 1442
+ + + + T + + HR+ V++ D + V+ G+++ + ++
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVL 242
Query: 1443 SFSKLVAEY 1451
S K+V Y
Sbjct: 243 SDPKVVEIY 251
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 108 bits (272), Expect = 5e-27
Identities = 45/236 (19%), Positives = 90/236 (38%), Gaps = 30/236 (12%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
++L+ + R L ++ G + +VG G+GK+TL++ + + GSI
Sbjct: 4 MQLQDVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQ 56
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTL-FRGSVRTNL-DPLGLYSDDEIW-KALEKCQLK 1332
G + + L + + + Q+ T F V L + E+ L
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD 116
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK-------RNRILVLDEANASIDS 1385
+ N+L S G+ Q L V+L+ ++L+LDE S+D
Sbjct: 117 DKLGRSTNQL-----------SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 1386 ATDAILQRIIRQ-EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
A + L +I+ ++ +H + + + +L GK+L +++
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 102 bits (256), Expect = 7e-25
Identities = 44/218 (20%), Positives = 85/218 (38%), Gaps = 36/218 (16%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------S 659
L ++ +++ + + + G GAGKS+LL + G G++ G
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSIQFAGQPLEAWSATKLALH 73
Query: 660 IAYVSQTSWIQSG-SIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQR 716
AY+SQ + + + + A ALD ++G+
Sbjct: 74 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-----------DKLGRS 122
Query: 717 GLNLSGGQKQRIQLARAVYN-------DADIYLFDDPFSAVDAHTAATLFNECVMAALEK 769
LSGG+ QR++LA V + L D+P +++D + L +
Sbjct: 123 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG 182
Query: 770 KTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+++ +H + R +L+GG++ SG +E+L
Sbjct: 183 LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 220
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 105 bits (263), Expect = 6e-26
Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 32/215 (14%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661
+ +NLDI + + G G GKS+LL I G SG + + +
Sbjct: 16 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVG 75
Query: 662 YVSQTSWIQSG-SIRDNILYG-------KPMDKARYDKAIKACALDKDINNFDHGDLTEI 713
V Q+ + S+ +N+ +G K + R ++ + L ++
Sbjct: 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK------ 129
Query: 714 GQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTV 772
LSGGQ+QR+ + R + + ++L D+P S +DA + E + +T+
Sbjct: 130 -----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 184
Query: 773 ILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
I VTH + D+I+VL+ G++ Q G EL
Sbjct: 185 IYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 219
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 101 bits (252), Expect = 2e-24
Identities = 50/235 (21%), Positives = 91/235 (38%), Gaps = 26/235 (11%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
++L+ + + +V K I EG V VG +G GK+TL+ + L G +
Sbjct: 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLY--------SDDEIWKALE 1327
I + + ++ Q L+ GL + + + E
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116
Query: 1328 KCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSAT 1387
QL + P L S GQRQ +GR L+ + +LDE +++D+A
Sbjct: 117 VLQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 165
Query: 1388 DAILQRIIR--QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
++ I + T+I V H + +D ++VL G++ + +P +L
Sbjct: 166 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 105 bits (264), Expect = 7e-26
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 38/221 (17%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
+R ++L++K + + + G G GK++ L I G G + +
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 659 ---SIAYVSQ-TSWIQSGSIRDNI-----LYGKPMD--KARYDKAIKACALDKDINNFDH 707
IA V Q + ++ DNI L P R + + L + +N
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 708 GDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAA 766
LSGGQ+QR+ L RA+ ++L D+P S +DA + E +
Sbjct: 139 -----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187
Query: 767 LEKKTVILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
T I VTH + DRI V+ G + Q G+ E+
Sbjct: 188 QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 101 bits (254), Expect = 1e-24
Identities = 45/239 (18%), Positives = 95/239 (39%), Gaps = 28/239 (11%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
+ L + + ++ ++ +G + ++G +G GKTT + + L EP+ G I
Sbjct: 4 VRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 1276 IDGVDICSMGLKDLR----VKLSIIPQEPTLF--RGSVRTNLDPLGLYS------DDEIW 1323
I + ++++ Q L+ PL L D +
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121
Query: 1324 KALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASI 1383
+ E L ++ P +L S GQRQ LGR ++++ ++ ++DE +++
Sbjct: 122 EVAELLGLTELLNRKPREL-----------SGGQRQRVALGRAIVRKPQVFLMDEPLSNL 170
Query: 1384 DSATDAILQRIIR--QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
D+ ++ ++ Q T I V H + D + V++ G L + P ++ +
Sbjct: 171 DAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 105 bits (263), Expect = 1e-25
Identities = 42/208 (20%), Positives = 89/208 (42%), Gaps = 18/208 (8%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS------------I 660
L+G++ +I+ + + G GAGK++ L I I SG V ++G I
Sbjct: 18 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77
Query: 661 AYVSQTSWIQSG-SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLN 719
+Y+ + + + + + + + + +I +I R
Sbjct: 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE----KIKDRVST 133
Query: 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779
S G +++ +ARA+ + + + D+P S +D A + A+ E T+++ +H +
Sbjct: 134 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 193
Query: 780 EFLSEV-DRILVLEGGQITQSGNYQELL 806
+ + DRI ++ G I ++G +EL
Sbjct: 194 LEVEFLCDRIALIHNGTIVETGTVEELK 221
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 102 bits (256), Expect = 8e-25
Identities = 52/229 (22%), Positives = 105/229 (45%), Gaps = 10/229 (4%)
Query: 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
G + ++ L+ R +LKGI+ EG G++G G+GKTT + + L++P+ G
Sbjct: 1 GAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQLK 1332
+ + G ++ ++R +S +P+E +R L + + + E +
Sbjct: 59 VTVFGKNVVEE-PHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA 117
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQ 1392
T I+ L K+ VS +S G + + R L+ R+ +LDE + +D ++
Sbjct: 118 TEIAGLGEKIKDRVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 173
Query: 1393 RIIRQ-EFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
+I++Q T++ +H + V D + ++ G ++E +L E
Sbjct: 174 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 102 bits (255), Expect = 4e-25
Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 18/198 (9%)
Query: 1215 RIELRQLKIRY-RPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273
++E+R L + Y +P VL+ IT T +G V G G GKTTL+ + ++P G
Sbjct: 2 KLEIRDLSVGYDKP----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 57
Query: 1274 ILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGL-YSDDEIWKALEKCQLK 1332
I+ +GV I + K + II ++ G+ + +EI ALE ++
Sbjct: 58 IIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV- 116
Query: 1333 TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQ 1392
+ + S G + L LL I VLD+ +ID + +
Sbjct: 117 -----------LDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 165
Query: 1393 RIIRQEFSNCTVITVAHR 1410
+ I + ++ ++ R
Sbjct: 166 KSILEILKEKGIVIISSR 183
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 101 bits (253), Expect = 8e-25
Identities = 41/191 (21%), Positives = 79/191 (41%), Gaps = 18/191 (9%)
Query: 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAY 662
P L + + I+ + G G GK++LL I + + G + G I +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 74
Query: 663 VSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLS 721
+ + + S+ D + + + +K AL+ ++ ++ ++ LS
Sbjct: 75 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES-------VEVLDLKKKLGELS 127
Query: 722 GGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781
G +R+QLA + +A+IY+ DDP A+D + + + EK VI+ + +
Sbjct: 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-- 185
Query: 782 LSEVDRILVLE 792
LS D L
Sbjct: 186 LSYCDVNENLH 196
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 102 bits (255), Expect = 8e-25
Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 21/208 (10%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIA 661
L ++L ++ + + G GAGK+ L I G SG + L G IA
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 662 YVSQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNL 720
+V Q S +++ N+ +G M K + K + A D I + + L L
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-------RNPLTL 128
Query: 721 SGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTHQV 779
SGG++QR+ LARA+ + I L D+P SA+D T + K TV+ +TH
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188
Query: 780 EFLSEV-DRILVLEGGQITQSGNYQELL 806
+ DRI V+ G++ Q G +E+
Sbjct: 189 TEARIMADRIAVVMDGKLIQVGKPEEIF 216
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 99.8 bits (248), Expect = 7e-24
Identities = 46/232 (19%), Positives = 96/232 (41%), Gaps = 24/232 (10%)
Query: 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSIL 1275
IE+ L +++ L ++ G ++G TG+GKT + + P G IL
Sbjct: 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 1276 IDGVDICSMGLKDLRVKLSIIPQEPTLF-----RGSVRTNLDPLGLYSDDEIWKALEKCQ 1330
+DG L + ++ + Q +LF + ++ + + + +
Sbjct: 59 LDGK--DVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 1331 LKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAI 1390
++ + P L S G++Q L R L+ +IL+LDE +++D T
Sbjct: 117 IEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 1391 LQRIIR--QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
+ ++ + + TV+ + H +D + V+ GKL++ +P ++ E
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 99.8 bits (248), Expect = 9e-24
Identities = 52/216 (24%), Positives = 90/216 (41%), Gaps = 29/216 (13%)
Query: 613 LRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------- 658
L VN++I+ ++ + G GAGK++ + I G +G +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 659 --SIAYVSQ----TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTE 712
I V Q + + L M K K ++ A DI++ + E
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE 140
Query: 713 IGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKT 771
LSG Q+QR+ LARA+ D + L D+PFS +DA + + + T
Sbjct: 141 -------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 772 VILVTHQVEFLSEV-DRILVLEGGQITQSGNYQELL 806
+++V+H + + DR+ VL G++ Q G ++L
Sbjct: 194 LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 99.0 bits (246), Expect = 2e-23
Identities = 49/232 (21%), Positives = 100/232 (43%), Gaps = 11/232 (4%)
Query: 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274
RI ++ + ++ + L + G R G++G +G+GKTT + + L P+ G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1275 LIDGVDICSMGLKDLRV---KLSIIPQEPTLFRG-SVRTNLDPLGLYSDDEIWKALEKCQ 1330
D + S G + K+ ++ Q L+ + N+ + ++ +
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 1331 LKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAI 1390
I + + L+ S Q+Q L R L+K +L+LDE +++D+
Sbjct: 123 EVAKILDIHHVLNHFPR----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178
Query: 1391 LQRIIR--QEFSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439
+ +++ Q T++ V+H + +D V VL GKL++ +P L +
Sbjct: 179 ARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 92.0 bits (228), Expect = 4e-21
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 21/206 (10%)
Query: 616 VNLDIKWAQKI-AVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663
+N+D + + + G GAGKS L I G + G V L G I +V
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 664 SQ-TSWIQSGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSG 722
Q + S+ NI YG + ++ + + + + D ++ LSG
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERV-ERDRRVREMAEKLGIAHLLD-----RKPARLSG 129
Query: 723 GQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECV-MAALEKKTVILVTHQVEF 781
G++QR+ LARA+ + L D+P SAVD T L E + ++ VTH +
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 782 LSEV-DRILVLEGGQITQSGNYQELL 806
+ + D + V+ G+I + G +EL
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKELF 215
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 88.1 bits (218), Expect = 8e-20
Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 17/218 (7%)
Query: 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPT 1301
++G TG+GK+ + + +V+P G + ++G DI L R + +PQ+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGFVPQDYA 80
Query: 1302 LF--RGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359
LF R L E + + + K I+ L ++ S G+RQ
Sbjct: 81 LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK-------PARLSGGERQ 133
Query: 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIR--QEFSNCTVITVAHRVPTVID- 1416
L R L+ + R+L+LDE +++D T +L +R Q + ++ V H +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML 193
Query: 1417 SDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAEYWSS 1454
+D V V+ G+++E + +L + VAE+ S+
Sbjct: 194 ADEVAVMLNGRIVEKGKLKELFSAKNGE---VAEFLSA 228
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 76.2 bits (186), Expect = 3e-16
Identities = 17/192 (8%), Positives = 44/192 (22%), Gaps = 28/192 (14%)
Query: 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFR 1304
++ + G G GKTTL+ + + + V + ++ ++
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 1305 GSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLG 1364
+ + + + A
Sbjct: 62 KFFTSKKLVGSYGVNVQYF----------------------------EELAIPILERAYR 93
Query: 1365 RVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLS 1424
R +++++DE + N V+ + L
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 1425 YGKLLEYDEPSK 1436
L+E ++
Sbjct: 154 GAVLIELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 75.0 bits (183), Expect = 7e-16
Identities = 23/196 (11%), Positives = 53/196 (27%), Gaps = 24/196 (12%)
Query: 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPM 684
KI + G G GK++L+ I+ + K + +RD +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEE---------------VRDPETKKRTG 46
Query: 685 DKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFD 744
+ + K K + + + A + + + D
Sbjct: 47 FRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIID 106
Query: 745 DPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQ--SGNY 802
+ ++ + + V+ + V I L G + + N
Sbjct: 107 EI-GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENR 165
Query: 803 QELLLAGTAFEQLVNA 818
+L E +++
Sbjct: 166 DVIL------EDILSL 175
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.0 bits (170), Expect = 4e-14
Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 7/177 (3%)
Query: 1246 VGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRG 1305
V + G G GKTTLI +++ +G + + G + + + +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 1306 SVRTNLDPL------GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQ 1359
D ++ L L+ S V DE +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 1360 LFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVID 1416
R L ++L A+++ I ++ +T +R + D
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKGKPL-ALVEEIRNRKDVKVFNVTKENRNHLLPD 179
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 51.9 bits (122), Expect = 3e-07
Identities = 29/300 (9%), Positives = 85/300 (28%), Gaps = 1/300 (0%)
Query: 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFT 334
+ I I +L + LL ++ + + + + + +
Sbjct: 14 FKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITS 73
Query: 335 QRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW 394
+ S SG + + + K+ + +
Sbjct: 74 YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGA 133
Query: 395 FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSEFMIAQDE 454
+ ++F ++ +VL I + +K + +
Sbjct: 134 LITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQ 193
Query: 455 RLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKA-YGTVIYWMSPTI 513
S ++L K + + +E + K + + +I ++
Sbjct: 194 VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA 253
Query: 514 ISSVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFL 573
++ V++ + L A TI V +++ ++ P++ + + + + + A L
Sbjct: 254 LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL 313
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 44.5 bits (103), Expect = 6e-05
Identities = 48/307 (15%), Positives = 108/307 (35%), Gaps = 8/307 (2%)
Query: 275 YLKENIFIAICALLRTIAVVVGPLLLYAFVNY------SNRGEENLQEGLSIVGCLIITK 328
Y I +++ ++ PLL+ ++ E+ ++I L I
Sbjct: 12 YKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFV 71
Query: 329 VVESFTQRHCFFGSRRSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRM 388
+V + + ++ + ++ + +Y LS+ + G++++ + D +
Sbjct: 72 IVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQT 131
Query: 389 GEFPFWFHLTWSLAL-QLFLAIGVLFGVVGLGALPGLVLFLICGLLNVPFAKILQKCQSE 447
+F + L + +A+ ++F + L L +F L F L+K E
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 448 FMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIY 507
A E E + + ++K + E+ + + + AY
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 508 WMSPTIISS-VIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSF 566
I VI +G L S + T+ + L + P+R + + + + Q S
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASM 311
Query: 567 DRINAFL 573
DR+ +
Sbjct: 312 DRVFQLI 318
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 39.5 bits (90), Expect = 0.002
Identities = 43/309 (13%), Positives = 96/309 (31%), Gaps = 13/309 (4%)
Query: 901 LLCLGVLAQSGFVGLQAAATYWLAYAI------------QIPKITSGILIGVYAGVSTAS 948
+ ++ G+ + YAI + + +
Sbjct: 15 RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVR 74
Query: 949 AVFVYFRSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFD 1008
+ R + A K N + F+ + VG++++R+ +D+
Sbjct: 75 PPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDF 134
Query: 1009 IPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAIFAMVAVRFVQRYYIATARELIRINGT 1068
I ++ + ++ + IM F+ ++ + A+F + R+L R
Sbjct: 135 ILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQ 194
Query: 1069 TKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFH-TNGVMEWLILRVEA 1127
A V + E QG+ +++F + D +N+ K + T
Sbjct: 195 ALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTV 254
Query: 1128 LQNLTLFTAALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERI 1187
+ + L G + G + + Y L G L + L S++R+
Sbjct: 255 TDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRV 314
Query: 1188 KQFMHIPPE 1196
Q + +
Sbjct: 315 FQLIDEDYD 323
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.1 bits (92), Expect = 0.002
Identities = 7/62 (11%), Positives = 22/62 (35%)
Query: 728 IQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDR 787
+ A Y + ++ D+ +A+D + I+++ + + D
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDA 404
Query: 788 IL 789
++
Sbjct: 405 LV 406
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Score = 39.5 bits (91), Expect = 0.002
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSM 1284
RVG+ G G GK+T I AL L+ AG + + VD S
Sbjct: 53 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSST 92
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1467 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.97 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.96 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.94 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.9 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.89 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.87 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.85 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.57 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.48 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.27 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.17 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.16 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.1 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.91 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.73 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.56 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.48 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.24 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.99 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.05 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.0 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.99 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.85 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.74 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.3 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.57 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 94.39 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.36 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.23 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.17 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 93.87 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.69 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.2 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 93.2 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.12 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.68 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.27 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 92.11 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 92.1 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 91.94 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.9 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 91.89 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.66 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.65 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 91.64 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 91.45 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 91.22 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.14 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 91.1 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 90.99 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 90.97 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 90.92 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 90.86 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 90.86 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 90.81 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 90.68 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 90.68 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 90.67 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 90.65 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 90.63 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 90.47 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 90.16 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 90.1 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 89.95 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 89.82 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 89.8 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 89.77 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 89.76 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 89.75 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 89.59 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 89.39 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 89.35 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 89.13 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 88.97 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 88.88 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 88.84 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 88.78 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 88.67 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 88.05 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 88.04 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 87.89 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.87 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 87.85 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.83 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 87.82 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 87.15 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 87.11 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 87.08 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 87.05 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 87.01 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 86.96 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 86.96 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 86.96 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 86.56 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 86.48 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 86.28 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 86.16 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 86.09 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 86.02 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 86.01 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 85.99 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 85.96 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 85.86 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 85.84 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 85.76 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 85.52 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 85.32 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 85.07 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 84.94 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 84.77 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 84.7 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.42 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 84.42 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 84.41 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 84.38 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 84.35 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 84.33 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 84.33 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 84.27 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 84.2 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 84.19 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 84.11 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 84.0 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 83.95 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 83.67 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 83.59 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 83.54 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 83.49 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 83.48 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 83.45 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 83.45 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 83.4 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 83.26 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 83.26 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 83.19 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 83.03 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 83.02 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 82.96 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 82.92 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 82.68 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 82.57 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 82.56 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 82.53 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 82.47 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 82.4 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 82.39 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 82.38 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 82.37 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 82.11 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 81.79 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 81.78 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 81.65 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 81.58 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 81.58 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 81.52 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 81.49 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 81.35 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 81.33 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 81.17 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 81.07 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 80.94 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 80.93 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 80.91 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 80.9 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 80.71 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 80.56 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 80.56 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 80.47 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 80.35 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 80.32 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 80.11 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 80.04 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=495.78 Aligned_cols=239 Identities=29% Similarity=0.502 Sum_probs=230.1
Q ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 97640899987888579999620000389618959999949999588999988414679863699979517999978885
Q 000481 1211 PFKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLR 1290 (1467)
Q Consensus 1211 p~~g~I~f~nvs~~Y~~~~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR 1290 (1467)
..+|.|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+.+|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred HCCEEECCCCCCCCCCHHHHCCCC-CCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 215786267754665567714999-9999999999999838814773077876542346888889069999999998606
Q 000481 1291 VKLSIIPQEPTLFRGSVRTNLDPL-GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1291 ~~isiIpQdp~LF~gTIR~NLdp~-~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1369 (1467)
+++++|||+|.+|+||||+||... ...+|+++++|++.+++.+++..+|+|+||.++++|.+||||||||+|||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCEEEEEECCEEEEECCHHHHHCCCCHHHHHHH
Q ss_conf 99889995788899999799999999977499379997249100112498999959889782492378403980699999
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f~~~TvI~IAHRl~ti~~~DrIlVld~G~i~E~g~p~~Ll~~~~~f~~l~~ 1449 (1467)
+|+|||||||||++|++|+..|.+.|++..+++|+|+|+||++++..||||+||++|+|+|.|+|++|+++++.|++|++
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~~ 251 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYS 251 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHH
T ss_conf 99899983765447977999999999987538889999689999985999999989999998899999868849999999
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=491.20 Aligned_cols=235 Identities=30% Similarity=0.531 Sum_probs=227.4
Q ss_pred EEEEEEEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 08999878885799996200003896189599999499995889999884146798636999795179999788852157
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~is 1294 (1467)
+|+|+||+|+|+++.+++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++.+.+|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 862677546655677149999-9999999999998388147730778765423468888890699999999986069988
Q 000481 1295 IIPQEPTLFRGSVRTNLDPLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373 (1467)
Q Consensus 1295 iIpQdp~LF~gTIR~NLdp~~-~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~I 1373 (1467)
+|||||.+|+|||++|+.... .+++++++++++.+++.+++..+|+|+++.++++|.+||||||||+|||||++++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCEEEEEECCEEEEECCHHHHHC-CCCHHHHHHH
Q ss_conf 999578889999979999999997749937999724910011249899995988978249237840-3980699999
Q 000481 1374 LVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLME-TNSSFSKLVA 1449 (1467)
Q Consensus 1374 LiLDEaTs~lD~~Td~~Iq~~ir~~f~~~TvI~IAHRl~ti~~~DrIlVld~G~i~E~g~p~~Ll~-~~~~f~~l~~ 1449 (1467)
||||||||++|+.|+..|.+.|++..+++|+|+||||++++..||||+||++|+|+|+|+|++|++ +++.|++|++
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~ 237 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHH
T ss_conf 55647765559899999999999985899899997889999849999999899999988999998299878999999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=486.79 Aligned_cols=239 Identities=29% Similarity=0.483 Sum_probs=229.7
Q ss_pred CCCEEEEEEEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH
Q ss_conf 76408999878885799996200003896189599999499995889999884146798636999795179999788852
Q 000481 1212 FKGRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV 1291 (1467)
Q Consensus 1212 ~~g~I~f~nvs~~Y~~~~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~ 1291 (1467)
..|.|+|+||+|+|+....++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++.+++|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CCEEECCCCCCCCCCHHHHCC--CCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 157862677546655677149--999999999999999838814773077876542346888889069999999998606
Q 000481 1292 KLSIIPQEPTLFRGSVRTNLD--PLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1292 ~isiIpQdp~LF~gTIR~NLd--p~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1369 (1467)
+++++||+|.+|++|+++|+. +...++++++++|++.+++.+++..+|+|||+.++++|.+||||||||+||||||++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCEEEEEECCEEEEECCHHHHHCCCCHHHHHHH
Q ss_conf 99889995788899999799999999977499379997249100112498999959889782492378403980699999
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVA 1449 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f~~~TvI~IAHRl~ti~~~DrIlVld~G~i~E~g~p~~Ll~~~~~f~~l~~ 1449 (1467)
+|+|||||||||++|++|+..|.+.|++..+++|+|+|+||++++..||||+||++|+|+|+|+|++|+++++.|++|++
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l~~ 249 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 249 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHH
T ss_conf 99889951644458988999999999875227889999887999985999999989999998899999868939999999
Q ss_pred H
Q ss_conf 9
Q 000481 1450 E 1450 (1467)
Q Consensus 1450 ~ 1450 (1467)
.
T Consensus 250 ~ 250 (253)
T d3b60a1 250 M 250 (253)
T ss_dssp H
T ss_pred H
T ss_conf 7
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=474.68 Aligned_cols=239 Identities=27% Similarity=0.465 Sum_probs=225.7
Q ss_pred CCCCEEEEEEEEEEECCC-CCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 976408999878885799-9962000038961895999994999958899998841467986369997951799997888
Q 000481 1211 PFKGRIELRQLKIRYRPN-APLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL 1289 (1467)
Q Consensus 1211 p~~g~I~f~nvs~~Y~~~-~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L 1289 (1467)
+.+|.|+|+||+|+|+.. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|+|||.|+++++.+.+
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HHCCEEECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5215786267754665567714999--99999999999998388147730778765423468888890699999999986
Q 000481 1290 RVKLSIIPQEPTLFRGSVRTNLDPL--GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1290 R~~isiIpQdp~LF~gTIR~NLdp~--~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1367 (1467)
|+++++|||+|.+|++|+++|+... ...++++++++++.+++.+++..+|+|+++.++++|.+||||||||+|||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHCCCCEEEEEECCEEEEECCHHHHHCCCCHHH
Q ss_conf 069988999578889999979999999997749--937999724910011249899995988978249237840398069
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEFS--NCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFS 1445 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f~--~~TvI~IAHRl~ti~~~DrIlVld~G~i~E~g~p~~Ll~~~~~f~ 1445 (1467)
+++|+|+|||||||++|+.|+..|++.|++..+ ++|+|+|+||++++..||||+||++|+|+|+|+|++|+++++.|+
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~ 246 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYW 246 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHH
T ss_conf 56870787167576568536899999999976506989999959799998599999998999999889999985975889
Q ss_pred HHHH
Q ss_conf 9999
Q 000481 1446 KLVA 1449 (1467)
Q Consensus 1446 ~l~~ 1449 (1467)
+|++
T Consensus 247 ~l~~ 250 (251)
T d1jj7a_ 247 AMVQ 250 (251)
T ss_dssp HHHC
T ss_pred HHHC
T ss_conf 9962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=480.08 Aligned_cols=234 Identities=28% Similarity=0.578 Sum_probs=224.7
Q ss_pred EEEEEEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEE
Q ss_conf 89998788857999962000038961895999994999958899998841467986369997951799997888521578
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~isi 1295 (1467)
|+++||+|+|+++ +++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.|||.|+++++.+.+|+++++
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 6267754665567714999--99999999999998388147730778765423468888890699999999986069988
Q 000481 1296 IPQEPTLFRGSVRTNLDPL--GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRI 1373 (1467)
Q Consensus 1296 IpQdp~LF~gTIR~NLdp~--~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~I 1373 (1467)
|||||.+|++|+|+|+... ...++++++++++.+++.+++..+|+++++.++++|.+||||||||+|||||++++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75665457853454301244555423567789999975554203742101523687898799999999999998529989
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCEEEEEECCEEEEECCHHHHHCCCCHHHHHHHH
Q ss_conf 99957888999997999999999774993799972491001124989999598897824923784039806999999
Q 000481 1374 LVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLVAE 1450 (1467)
Q Consensus 1374 LiLDEaTs~lD~~Td~~Iq~~ir~~f~~~TvI~IAHRl~ti~~~DrIlVld~G~i~E~g~p~~Ll~~~~~f~~l~~~ 1450 (1467)
||||||||++|.+++..|++.|++..+++|+|+|+||++++..||||+||++|+|+|+|+|++|+++++.|++|+++
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~ 237 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHH
T ss_conf 99658865569889999988788871799899997879999849999999899999999999998689699999999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.4e-45 Score=410.30 Aligned_cols=227 Identities=30% Similarity=0.510 Sum_probs=212.3
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------
Q ss_conf 899848999679983899998732212588418809999678988957899998388888872899839-----------
Q 000481 590 KSDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG----------- 658 (1467)
Q Consensus 590 ~~~~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g----------- 658 (1467)
...+.|+++|++|+|+.+ ..++|+|+||++++|++++|+|++|||||||+++|+|.+++.+|+|.++|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~l 90 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL 90 (255)
T ss_dssp CCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHH
T ss_conf 778879999889995999-9760644389983998999988999809999999971278630001539987530788886
Q ss_pred --EEEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf --0999826776798878899704999-9999999999994306988329999973136798766917999999999871
Q 000481 659 --SIAYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 659 --~iayv~Q~~wi~~~TireNIlfg~~-~~~~~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly 735 (1467)
.++||+|+|+++++||+|||.||.+ .++++..++++.|++.++++.+|+|++|.+|++|.+|||||||||+||||++
T Consensus 91 r~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~ 170 (255)
T d2hyda1 91 RNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 170 (255)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred HHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 34145651015689987999985158679999999999996979999736242010333888984999999999999985
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
Q ss_conf 59989998087776699999999999997823996899982694313107989999399386833968898607138999
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1467)
Q Consensus 736 ~~~~i~lLDdp~salD~~~~~~if~~~~~~~l~~kT~ilvTh~~~~l~~~d~i~~l~~G~i~~~G~~~el~~~~~~~~~l 815 (1467)
++|+|++||||+|+||+++.+.+++ .+....+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++.++.|.++
T Consensus 171 ~~p~ililDEpts~LD~~t~~~i~~-~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l 249 (255)
T d2hyda1 171 NNPPILILDEATSALDLESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 249 (255)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
T ss_conf 5998999837654479779999999-999875388899996899999859999999899999988999998688499999
Q ss_pred HHH
Q ss_conf 997
Q 000481 816 VNA 818 (1467)
Q Consensus 816 ~~~ 818 (1467)
++.
T Consensus 250 ~~~ 252 (255)
T d2hyda1 250 YSI 252 (255)
T ss_dssp HTT
T ss_pred HHH
T ss_conf 997
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-45 Score=407.07 Aligned_cols=224 Identities=30% Similarity=0.469 Sum_probs=209.8
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------EE
Q ss_conf 48999679983899998732212588418809999678988957899998388888872899839-------------09
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SI 660 (1467)
Q Consensus 594 ~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g-------------~i 660 (1467)
.|+|+|++|+|+++ .+++|+|+||++++|+.++|+|++|||||||+++|+|.+++.+|+|.++| .+
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99826776798878899704999-99999999999943069883299999731367987669179999999998715998
Q 000481 661 AYVSQTSWIQSGSIRDNILYGKP-MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1467)
Q Consensus 661 ayv~Q~~wi~~~TireNIlfg~~-~~~~~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly~~~~ 739 (1467)
+||+|+|+++++||+|||.++.+ .+.+++.++++.|.+.++++.+|.|..|.+|++|.+|||||||||+||||++.+|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHH
Q ss_conf 999808777669999999999999782399689998269431310798999939938683396889860-7138999997
Q 000481 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLA-GTAFEQLVNA 818 (1467)
Q Consensus 740 i~lLDdp~salD~~~~~~if~~~~~~~l~~kT~ilvTh~~~~l~~~d~i~~l~~G~i~~~G~~~el~~~-~~~~~~l~~~ 818 (1467)
|+|||||||+||+.+++++++. +....+++|+|+|||+++.+..||+|++|++|+|++.|+++|++++ ++.|.++++.
T Consensus 160 ililDEpts~LD~~~~~~i~~~-l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHH-HHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHH-HHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 3556477655598999999999-999858998999978899998499999998999999889999982998789999998
Q ss_pred H
Q ss_conf 3
Q 000481 819 H 819 (1467)
Q Consensus 819 ~ 819 (1467)
+
T Consensus 239 Q 239 (241)
T d2pmka1 239 Q 239 (241)
T ss_dssp H
T ss_pred H
T ss_conf 1
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.7e-44 Score=400.84 Aligned_cols=227 Identities=28% Similarity=0.465 Sum_probs=212.8
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------
Q ss_conf 99848999679983899998732212588418809999678988957899998388888872899839------------
Q 000481 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1467)
Q Consensus 591 ~~~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g------------ 658 (1467)
..+.|+++|++|+|+.. +.++|+|+||++++|+.++|+|++|||||||+++|+|.++|.+|+|.++|
T Consensus 10 ~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp CCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHH
T ss_conf 83079999889992999-97635332899859999999999998599999998621688846898788012111066542
Q ss_pred -EEEEECCCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf -099982677679887889970499--99999999999994306988329999973136798766917999999999871
Q 000481 659 -SIAYVSQTSWIQSGSIRDNILYGK--PMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 659 -~iayv~Q~~wi~~~TireNIlfg~--~~~~~~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly 735 (1467)
.++||+|+|+++++|+++|+.+|. ..+.+++.++++.|++.++++.+|+|.+|.+|++|.+|||||||||+||||++
T Consensus 89 ~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred HEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 06879950254478620243320572208999999999998179999735544101434888984999999999999995
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
Q ss_conf 59989998087776699999999999997823996899982694313107989999399386833968898607138999
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQL 815 (1467)
Q Consensus 736 ~~~~i~lLDdp~salD~~~~~~if~~~~~~~l~~kT~ilvTh~~~~l~~~d~i~~l~~G~i~~~G~~~el~~~~~~~~~l 815 (1467)
.+|+|++||||+|+||+.+.+.|++ .+..+.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++.++.|.++
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l 247 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 247 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHH-HHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
T ss_conf 4998899516444589889999999-998752278899998879999859999999899999988999998689399999
Q ss_pred HHHH
Q ss_conf 9973
Q 000481 816 VNAH 819 (1467)
Q Consensus 816 ~~~~ 819 (1467)
++.+
T Consensus 248 ~~~Q 251 (253)
T d3b60a1 248 HKMQ 251 (253)
T ss_dssp HHHT
T ss_pred HHHC
T ss_conf 9972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.9e-44 Score=397.69 Aligned_cols=227 Identities=26% Similarity=0.395 Sum_probs=208.2
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------
Q ss_conf 99848999679983899998732212588418809999678988957899998388888872899839------------
Q 000481 591 SDRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------ 658 (1467)
Q Consensus 591 ~~~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g------------ 658 (1467)
-.+.|+++|++|+|+..++.++|+|+||++++|++++|+|++|||||||+++|+|.++|.+|+|.++|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred CCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHH
T ss_conf 53369999989988999999767443899849989999999998499999998614378768998899853110137888
Q ss_pred -EEEEECCCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf -0999826776798878899704999--9999999999994306988329999973136798766917999999999871
Q 000481 659 -SIAYVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 659 -~iayv~Q~~wi~~~TireNIlfg~~--~~~~~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly 735 (1467)
.++||+|+|+++++||+|||.||.. .+.++..+..+.+++.+.++.+|+|.+|.+|++|.+|||||||||+||||++
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCC
T ss_conf 77654045650027634655454210130278899999999899999856121113675167668954704899860445
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCHHHH
Q ss_conf 5998999808777669999999999999782-399689998269431310798999939938683396889860713899
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQ 814 (1467)
Q Consensus 736 ~~~~i~lLDdp~salD~~~~~~if~~~~~~~-l~~kT~ilvTh~~~~l~~~d~i~~l~~G~i~~~G~~~el~~~~~~~~~ 814 (1467)
++|+|++||||||+||+++...+++.+.... ..++|+|+|||+++.+..||+|++|++|+|++.|+++|+++.++.|.+
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~ 247 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA 247 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHH
T ss_conf 68707871675765685368999999999765069899999597999985999999989999998899999859758899
Q ss_pred HHH
Q ss_conf 999
Q 000481 815 LVN 817 (1467)
Q Consensus 815 l~~ 817 (1467)
+++
T Consensus 248 l~~ 250 (251)
T d1jj7a_ 248 MVQ 250 (251)
T ss_dssp HHC
T ss_pred HHC
T ss_conf 962
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.5e-44 Score=398.09 Aligned_cols=216 Identities=24% Similarity=0.352 Sum_probs=117.0
Q ss_pred EEEEEEEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 08999878885799996200003896189599999499995889999884146798636999795179999788852157
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~is 1294 (1467)
.|.|+|+++.+ .|||+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|| +++
T Consensus 38 ~i~~~~~~~~g----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~ 100 (281)
T d1r0wa_ 38 NVSFSHLCLVG----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVS 100 (281)
T ss_dssp --CHHHHHHTT----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEE
T ss_pred CEEEEECCCCC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------EEE
T ss_conf 67999769899----7677375999859999999989998299999999579747882899999-------------999
Q ss_pred EECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 86267754665567714999999999999999983881477307787654234688888906999999999860699889
Q 000481 1295 IIPQEPTLFRGSVRTNLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRIL 1374 (1467)
Q Consensus 1295 iIpQdp~LF~gTIR~NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~IL 1374 (1467)
++||+|.+|++|+++|+.....+++.+++++++.+++.+.+..+|+++++.++++|.+||||||||++|||||+++|+||
T Consensus 101 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~il 180 (281)
T d1r0wa_ 101 FCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY 180 (281)
T ss_dssp EECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred EEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCH
T ss_conf 98164302676032142033345605799999997769999846123323555542377999999999999998696351
Q ss_pred EEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCCHHHCCCCEEEEEECCEEEEECCHHHHHCCCCHHHHH
Q ss_conf 99578889999979999999-99774993799972491001124989999598897824923784039806999
Q 000481 1375 VLDEANASIDSATDAILQRI-IRQEFSNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKL 1447 (1467)
Q Consensus 1375 iLDEaTs~lD~~Td~~Iq~~-ir~~f~~~TvI~IAHRl~ti~~~DrIlVld~G~i~E~g~p~~Ll~~~~~f~~l 1447 (1467)
+||||||++|+.|+..|.+. +....+++|+|+|+||++.+..||||+||++|+|+++|+|++|++.++.|.+.
T Consensus 181 lLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~ 254 (281)
T d1r0wa_ 181 LLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSK 254 (281)
T ss_dssp EEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHH
T ss_conf 33385544898999999999998862899999992528999859999999899999987899996059489998
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.4e-43 Score=388.48 Aligned_cols=220 Identities=40% Similarity=0.700 Sum_probs=203.5
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCC
Q ss_conf 84899967998389999873221258841880999967898895789999838888887289983909998267767988
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSG 672 (1467)
Q Consensus 593 ~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g~iayv~Q~~wi~~~ 672 (1467)
..|.|++.+| . ..|+|+|+||++++|++++|+|++|||||||+++|+|.+++.+|+|.++|+++|++|+||++++
T Consensus 37 ~~i~~~~~~~--~---g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~ 111 (281)
T d1r0wa_ 37 NNVSFSHLCL--V---GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPG 111 (281)
T ss_dssp ---CHHHHHH--T---TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSE
T ss_pred CCEEEEECCC--C---CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCCCCC
T ss_conf 9679997698--9---9767737599985999999998999829999999957974788289999999998164302676
Q ss_pred CHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf 78899704999999999999999430698832999997313679876691799999999987159989998087776699
Q 000481 673 SIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDA 752 (1467)
Q Consensus 673 TireNIlfg~~~~~~~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~ 752 (1467)
||+|||.||..+++.++..+++.|.+..|+..+|+|+.|.+|++|.+|||||||||+||||++++|+|++||||||+||+
T Consensus 112 tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~ 191 (281)
T d1r0wa_ 112 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 191 (281)
T ss_dssp EHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCH
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCH
T ss_conf 03214203334560579999999776999984612332355554237799999999999999869635133385544898
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHH
Q ss_conf 99999999999782399689998269431310798999939938683396889860713899999
Q 000481 753 HTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVN 817 (1467)
Q Consensus 753 ~~~~~if~~~~~~~l~~kT~ilvTh~~~~l~~~d~i~~l~~G~i~~~G~~~el~~~~~~~~~l~~ 817 (1467)
.+.+.+++.++....+++|+|+|||+++.+..||+|++|++|+|++.|+++|++...+.|...+.
T Consensus 192 ~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~~ 256 (281)
T d1r0wa_ 192 FTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 256 (281)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHHC
T ss_conf 99999999999886289999999252899985999999989999998789999605948999872
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=9.5e-44 Score=394.28 Aligned_cols=221 Identities=26% Similarity=0.473 Sum_probs=206.7
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------EEE
Q ss_conf 8999679983899998732212588418809999678988957899998388888872899839-------------099
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-------------SIA 661 (1467)
Q Consensus 595 i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g-------------~ia 661 (1467)
++++|++|+|+.+ +++|+|+||++++|++++|+|++|||||||+++|+|.++|.+|+|.++| +|+
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 7999889987999--84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9826776798878899704999--99999999999943069883299999731367987669179999999998715998
Q 000481 662 YVSQTSWIQSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1467)
Q Consensus 662 yv~Q~~wi~~~TireNIlfg~~--~~~~~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly~~~~ 739 (1467)
||+|+|+++++||+||+.++.. .+++...++++.+.+..++..+|+|..|.||++|.+|||||||||+||||++.+|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHH
Q ss_conf 9998087776699999999999997823996899982694313107989999399386833968898607138999997
Q 000481 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNYQELLLAGTAFEQLVNA 818 (1467)
Q Consensus 740 i~lLDdp~salD~~~~~~if~~~~~~~l~~kT~ilvTh~~~~l~~~d~i~~l~~G~i~~~G~~~el~~~~~~~~~l~~~ 818 (1467)
|++||||+|+||+++.+.+++ .+....+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++.++.|.++++.
T Consensus 160 ililDEpts~LD~~~~~~i~~-~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~ 237 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQK-ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHH-HHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHC
T ss_pred EEEECCCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHH
T ss_conf 999658865569889999988-788871799899997879999849999999899999999999998689699999999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=7.8e-39 Score=351.24 Aligned_cols=213 Identities=23% Similarity=0.409 Sum_probs=189.6
Q ss_pred EEEEEEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEE
Q ss_conf 89998788857999962000038961895999994999958899998841467986369997951799997888521578
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~isi 1295 (1467)
|+++|++.+|.. .+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+++++.. |+++++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred ECCCCCCCCC-CHHHHCC----CCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 6267754665-5677149----9999999999999998388147730778765423468888890699999999986069
Q 000481 1296 IPQEPTLFRG-SVRTNLD----PLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKR 1370 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLd----p~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~ 1370 (1467)
|||+|.+|.. |+++|+. ..+.-.++++.++++.+++.++....| ..||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTSC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCH-----------HHCCHHHHCCHHHHHHHHCC
T ss_conf 5121111746657788888776405538999999999825655575895-----------54799984014030434436
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHCC-CCEEEEEECCEEEEECCHHHHHC-CCCHH
Q ss_conf 98899957888999997999999999774--99379997249100112-49899995988978249237840-39806
Q 000481 1371 NRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNSSF 1444 (1467)
Q Consensus 1371 ~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti~~-~DrIlVld~G~i~E~g~p~~Ll~-~~~~f 1444 (1467)
|+||+|||||+++|+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|++++.|+|+++++ +...+
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 771443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.4e-39 Score=350.54 Aligned_cols=218 Identities=26% Similarity=0.415 Sum_probs=190.6
Q ss_pred EEEEEEEEEECCCCC--CCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899987888579999--6200003896189599999499995889999884146798636999795179999788---85
Q 000481 1216 IELRQLKIRYRPNAP--LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD---LR 1290 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~--~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~---LR 1290 (1467)
|+++|++.+|+.+.. .||+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred HCCEEECCCCCCCCC-CHHHHCC----CCCC---CCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 215786267754665-5677149----9999---9999999999983881477307787654234688888906999999
Q 000481 1291 VKLSIIPQEPTLFRG-SVRTNLD----PLGL---YSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1291 ~~isiIpQdp~LF~g-TIR~NLd----p~~~---~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~ 1362 (1467)
+++++|||+|.+|.. |+++|+. ..+. ..++.+.++|+.+++.+.....| ..||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~-----------~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB-----------SCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCH-----------HHCCHHHHHHHH
T ss_conf 166430225222799649999999999849998999999999999769903554894-----------349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHCC-CCEEEEEECCEEEEECCHHHHHC
Q ss_conf 9998606998899957888999997999999999774--99379997249100112-49899995988978249237840
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARALLr~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti~~-~DrIlVld~G~i~E~g~p~~Ll~ 1439 (1467)
|||||..+|++|++||||+++|+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+|+|.|+|+++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred -CCCHH
Q ss_conf -39806
Q 000481 1440 -TNSSF 1444 (1467)
Q Consensus 1440 -~~~~f 1444 (1467)
+...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCCHH
T ss_conf 899857
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.9e-38 Score=346.30 Aligned_cols=215 Identities=23% Similarity=0.362 Sum_probs=188.9
Q ss_pred EEEEEEEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 08999878885799996200003896189599999499995889999884146798636999795179999788852157
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~is 1294 (1467)
.|+++|++.+|.. ..+|+||||+|++||.+||+|+||||||||++++.|+++|++|+|.+||.|+++.+.+ |++++
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 4999879999999--9998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EECCCCCCCC-CCHHHHCCCCC---CCCH----HHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8626775466-55677149999---9999----99999999838814773077876542346888889069999999998
Q 000481 1295 IIPQEPTLFR-GSVRTNLDPLG---LYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRV 1366 (1467)
Q Consensus 1295 iIpQdp~LF~-gTIR~NLdp~~---~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARA 1366 (1467)
+|||+|.+|. -|+++|+.... ..+. +.+.++++.+++.++....| ..||||||||++||||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARA 150 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHH
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH-----------HHCCHHHHHHHHHHHH
T ss_conf 98003353422209999999998739999999999999998759855660995-----------4699999889999766
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHCC-CCEEEEEECCEEEEECCHHHHHC-CCC
Q ss_conf 606998899957888999997999999999774--99379997249100112-49899995988978249237840-398
Q 000481 1367 LLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNS 1442 (1467)
Q Consensus 1367 LLr~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti~~-~DrIlVld~G~i~E~g~p~~Ll~-~~~ 1442 (1467)
|..+|+||+|||||+++|+.+...|.+.|++.. .++|+|+|+|+++.+.. ||||++|++|+|+|.|+|+++++ +..
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 230 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 230 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
T ss_conf 40499824306886668989998999999999873198079994899999986999999989999998599999868999
Q ss_pred HH
Q ss_conf 06
Q 000481 1443 SF 1444 (1467)
Q Consensus 1443 ~f 1444 (1467)
.|
T Consensus 231 ~~ 232 (239)
T d1v43a3 231 VF 232 (239)
T ss_dssp HH
T ss_pred HH
T ss_conf 89
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.6e-39 Score=355.40 Aligned_cols=219 Identities=23% Similarity=0.395 Sum_probs=191.7
Q ss_pred EEEEEEEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHH
Q ss_conf 08999878885799996200003896189599999499995889999884146798636999795179999---788852
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG---LKDLRV 1291 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~---l~~LR~ 1291 (1467)
.|+++|++.+|+.+...+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|++..+ ...+|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CCEEECCCCCCCCC-CHHHHCC-CCC--CCC----HHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 15786267754665-5677149-999--999----999999999838814773077876542346888889069999999
Q 000481 1292 KLSIIPQEPTLFRG-SVRTNLD-PLG--LYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCL 1363 (1467)
Q Consensus 1292 ~isiIpQdp~LF~g-TIR~NLd-p~~--~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~L 1363 (1467)
++++|||+|.||+. |+++|+. |.. ..+ ++.+.++++.+++.++....|. .||||||||++|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----------~LSGGqkQRvai 151 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR-----------ELSGAQQQRVAL 151 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----------GSCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCHH-----------HCCHHHHHHHHH
T ss_conf 514773043346666577776655676137999999999999866591766648954-----------599999858998
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHCC-CCEEEEEECCEEEEECCHHHHHC-
Q ss_conf 998606998899957888999997999999999774--99379997249100112-49899995988978249237840-
Q 000481 1364 GRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME- 1439 (1467)
Q Consensus 1364 ARALLr~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti~~-~DrIlVld~G~i~E~g~p~~Ll~- 1439 (1467)
||||..+|+||++||||+++|+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+|+|.|+|+++++
T Consensus 152 ARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 75776046614544786679989988998999999863598799997999999996999999989999998699999868
Q ss_pred CCCHH
Q ss_conf 39806
Q 000481 1440 TNSSF 1444 (1467)
Q Consensus 1440 ~~~~f 1444 (1467)
+...|
T Consensus 232 P~~~~ 236 (242)
T d1oxxk2 232 PVSIQ 236 (242)
T ss_dssp CSSHH
T ss_pred CCCHH
T ss_conf 99979
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-38 Score=348.45 Aligned_cols=214 Identities=24% Similarity=0.336 Sum_probs=189.0
Q ss_pred EEEEEEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEE
Q ss_conf 89998788857999962000038961895999994999958899998841467986369997951799997888521578
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~isi 1295 (1467)
|+++|++++|.. ..+|+||||+|++||.+||+|+||||||||++++.|+..|++|+|.+||.|+++.+. .|++|++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEEE
T ss_conf 999999999899--999811177886998999998999829999999965878888889999997788864--4432223
Q ss_pred ECCCCCCCCC-CHHHHCCCCCC---CC----HHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6267754665-56771499999---99----9999999998388147730778765423468888890699999999986
Q 000481 1296 IPQEPTLFRG-SVRTNLDPLGL---YS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL 1367 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp~~~---~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL 1367 (1467)
|||+|.+|.. |+++|+..... .+ ++.+.++++.+++.++....| ..||||||||++|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHHH
T ss_conf 4334202643337889789998759988999999999997578865664896-----------56999999999999997
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHCC-CCEEEEEECCEEEEECCHHHHHC-CCCH
Q ss_conf 06998899957888999997999999999774--99379997249100112-49899995988978249237840-3980
Q 000481 1368 LKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNSS 1443 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti~~-~DrIlVld~G~i~E~g~p~~Ll~-~~~~ 1443 (1467)
+.+|++|+|||||+++|+.+...|++.|++.. .++|+|+|+|+++.+.. ||||++|++|+|++.|+|+++++ +...
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~ 225 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCH
T ss_conf 03998899758887889889989999999998742987999948999999969999999799999980899997389997
Q ss_pred H
Q ss_conf 6
Q 000481 1444 F 1444 (1467)
Q Consensus 1444 f 1444 (1467)
|
T Consensus 226 ~ 226 (232)
T d2awna2 226 F 226 (232)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2e-38 Score=347.67 Aligned_cols=210 Identities=22% Similarity=0.368 Sum_probs=180.2
Q ss_pred EEEEEEEEEECCCCC--CCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 899987888579999--62000038961895999994999958899998841467986369997951799997888----
Q 000481 1216 IELRQLKIRYRPNAP--LVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDL---- 1289 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~--~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~L---- 1289 (1467)
|+++|++++|+.+.. .+|+||||+|++||.+||+|+||||||||++++.|+.+|++|+|.+||.|+..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HHCCEEECCCCCCCCC-CHHHHCC----C--CCCCCHH----HHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 5215786267754665-5677149----9--9999999----99999998388147730778765423468888890699
Q 000481 1290 RVKLSIIPQEPTLFRG-SVRTNLD----P--LGLYSDD----EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQR 1358 (1467)
Q Consensus 1290 R~~isiIpQdp~LF~g-TIR~NLd----p--~~~~sd~----ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQr 1358 (1467)
|++|++|||+|.+|+. |+++|+. + .+..+.+ ++.+.++.+++.+.. .+... .+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~------~~~~p----~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF------ANHKP----NQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGG------TTCCG----GGSCHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHH------HCCCH----HHCCHHHH
T ss_conf 555778804124176866888775788872247899999999999988762423455------34880----23899999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHCCCCEEEEEECCEEEEECCHH
Q ss_conf 99999998606998899957888999997999999999774--993799972491001124989999598897824923
Q 000481 1359 QLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPS 1435 (1467)
Q Consensus 1359 Qll~LARALLr~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti~~~DrIlVld~G~i~E~g~p~ 1435 (1467)
||++|||||..+|+||++|||||++|+.+...|++.|++.. .++|+|+|+|+++.+..||||++|++|+|+|.|++.
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~r 230 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCCC
T ss_conf 9999875652278889946876546989999999999999984399999987888999869989999899999952579
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.1e-38 Score=350.13 Aligned_cols=217 Identities=20% Similarity=0.321 Sum_probs=189.0
Q ss_pred EEEEEEEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 08999878885799996200003896189599999499995889999884146798636999795179999788----85
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKD----LR 1290 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~----LR 1290 (1467)
.|+++|++.+|.. ..+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred HCCEEECCCCCCCCC-CHHHHCCCC---CCCC----HHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 215786267754665-567714999---9999----99999999983881477307787654234688888906999999
Q 000481 1291 VKLSIIPQEPTLFRG-SVRTNLDPL---GLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFC 1362 (1467)
Q Consensus 1291 ~~isiIpQdp~LF~g-TIR~NLdp~---~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~ 1362 (1467)
+++++|||+|.||+. |+++|+... ...+ ++.+.++++.+++.+.....| ..||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----------~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH-----------HHCCHHHHHHHH
T ss_conf 551200221222310116676330687729998999999999998759966762993-----------349999999999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHCC-CCEEEEEECCEEEEECCHHHHHC
Q ss_conf 9998606998899957888999997999999999774--99379997249100112-49899995988978249237840
Q 000481 1363 LGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1363 LARALLr~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti~~-~DrIlVld~G~i~E~g~p~~Ll~ 1439 (1467)
|||||..+|+||+|||||+++|+.+...|.+.|++.. .+.|+|+|+|+++.+.. ||||+||++|+++|.|+|+++++
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998269988982588765698999899999999986369889999599999999699999998999999859999982
Q ss_pred -CCCHH
Q ss_conf -39806
Q 000481 1440 -TNSSF 1444 (1467)
Q Consensus 1440 -~~~~f 1444 (1467)
+...|
T Consensus 230 ~P~~~~ 235 (240)
T d1g2912 230 KPANTF 235 (240)
T ss_dssp SCSBHH
T ss_pred CCCCHH
T ss_conf 899989
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7e-38 Score=342.92 Aligned_cols=221 Identities=26% Similarity=0.419 Sum_probs=189.8
Q ss_pred EEEEEEEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---------
Q ss_conf 08999878885799996200003896189599999499995889999884146798636999795179999---------
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMG--------- 1285 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~--------- 1285 (1467)
.|+++|++++|.. ..||+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899--99881506688699799999899982999999997476678997799999933677520000235
Q ss_pred ----HHHHHHCCEEECCCCCCCCC-CHHHHCC--C--CCCCC----HHHHHHHHHHCCCCHHHHH-CCCCCCCCCCCCCC
Q ss_conf ----78885215786267754665-5677149--9--99999----9999999998388147730-77876542346888
Q 000481 1286 ----LKDLRVKLSIIPQEPTLFRG-SVRTNLD--P--LGLYS----DDEIWKALEKCQLKTTISS-LPNKLDSSVSDEGE 1351 (1467)
Q Consensus 1286 ----l~~LR~~isiIpQdp~LF~g-TIR~NLd--p--~~~~s----d~ei~~aL~~~~L~~~v~~-lp~gLdt~v~e~G~ 1351 (1467)
....|+++++|||+|.+|.. |+++|+. + ....+ ++.+.++++.+++.+.... .| .
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-----------~ 148 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-----------V 148 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------G
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----------C
T ss_conf 17679997454489983323141101021365657876299989999999999998299524430682-----------2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHCC-CCEEEEEECCEEE
Q ss_conf 889069999999998606998899957888999997999999999774-99379997249100112-4989999598897
Q 000481 1352 NWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLL 1429 (1467)
Q Consensus 1352 nLS~GQrQll~LARALLr~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f-~~~TvI~IAHRl~ti~~-~DrIlVld~G~i~ 1429 (1467)
.|||||+||++|||||..+|++|++||||+++|+.+...|.+.|++.. +++|+|+|+|+++.+.. ||||+||++|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 05677888989999984399878852455568878888998765541036883389948999999869999999799999
Q ss_pred EECCHHHHHC-CCCHHH-HHH
Q ss_conf 8249237840-398069-999
Q 000481 1430 EYDEPSKLME-TNSSFS-KLV 1448 (1467)
Q Consensus 1430 E~g~p~~Ll~-~~~~f~-~l~ 1448 (1467)
|.|+|+++++ +...|- +++
T Consensus 229 ~~g~~~ev~~~P~~~~~~~ll 249 (258)
T d1b0ua_ 229 EEGDPEQVFGNPQSPRLQQFL 249 (258)
T ss_dssp EEECHHHHHHSCCSHHHHHHH
T ss_pred EECCHHHHHHCCCCHHHHHHH
T ss_conf 984999998389999999988
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.6e-36 Score=331.06 Aligned_cols=212 Identities=25% Similarity=0.408 Sum_probs=184.8
Q ss_pred CEEEEEEEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCC
Q ss_conf 40899987888579999620000389618959999949999588999988414679863699979517999978885215
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKL 1293 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~i 1293 (1467)
|.|+++|++.+|.. ..||+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.++|.|+.+. .+.+|+++
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred CCEEEEEEEEEECC--EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHHE
T ss_conf 97899958999999--9998062568848979999999999999999999669887888799986724468-39887218
Q ss_pred EEECCCCCCCCC-CHHHHCCCCC---CCCHHHH----HHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 786267754665-5677149999---9999999----9999983881477307787654234688888906999999999
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDPLG---LYSDDEI----WKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGR 1365 (1467)
Q Consensus 1294 siIpQdp~LF~g-TIR~NLdp~~---~~sd~ei----~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LAR 1365 (1467)
+++||++.+|.. |+++|+..+. ..+++++ .++++.+++.+.. +.. -.+||+|||||++|||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-------KDR----VSTYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG-------GSB----GGGCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-------HHH----HHHCCHHHHHHHHHHH
T ss_conf 67500154687866778889899861799899999999999867978888-------504----5337998989999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHCC-CCEEEEEECCEEEEECCHHHHHC
Q ss_conf 8606998899957888999997999999999774-99379997249100112-49899995988978249237840
Q 000481 1366 VLLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME 1439 (1467)
Q Consensus 1366 ALLr~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f-~~~TvI~IAHRl~ti~~-~DrIlVld~G~i~E~g~p~~Ll~ 1439 (1467)
|++.+|+||+|||||+++|+.+...|++.|++.. ++.|||+++|+++.+.. ||||+||++|++++.|+|+++.+
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9865999887337988979899999999999999659989999598999999699999998999999928999986
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9.6e-37 Score=332.96 Aligned_cols=212 Identities=20% Similarity=0.312 Sum_probs=181.5
Q ss_pred EEEEEEEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC-C
Q ss_conf 089998788857999962000038961895999994999958899998841467986369997951799997888521-5
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVK-L 1293 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~-i 1293 (1467)
-++++|++.+|.. ..||+||||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+.++++++ +
T Consensus 4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799--68871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEECCCCCCCCC-CHHHHCCCC----------------CCCCH----HHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 786267754665-567714999----------------99999----999999998388147730778765423468888
Q 000481 1294 SIIPQEPTLFRG-SVRTNLDPL----------------GLYSD----DEIWKALEKCQLKTTISSLPNKLDSSVSDEGEN 1352 (1467)
Q Consensus 1294 siIpQdp~LF~g-TIR~NLdp~----------------~~~sd----~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~n 1352 (1467)
+++||+|.+|.. |+++|+-.. ....+ ++..++++..++.+. .|..+ .+
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~ 150 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-------YDRKA----GE 150 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-------TTSBG----GG
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH-------CCCCH----HH
T ss_conf 72577642478874232143013330345045665421353289999999999876196302-------05953----56
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHCC-CCEEEEEECCEEEE
Q ss_conf 8906999999999860699889995788899999799999999977-499379997249100112-49899995988978
Q 000481 1353 WSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIRQE-FSNCTVITVAHRVPTVID-SDMVMVLSYGKLLE 1430 (1467)
Q Consensus 1353 LS~GQrQll~LARALLr~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~-f~~~TvI~IAHRl~ti~~-~DrIlVld~G~i~E 1430 (1467)
||||||||++|||||..+|++|+|||||+++|+.+...|.+.|++. -+++|+|+|+|+++.+.. ||||+||++|+|++
T Consensus 151 LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~ 230 (254)
T d1g6ha_ 151 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 230 (254)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE
T ss_conf 99188889999999975927232439765699999999999999999789989999476999998699999996998999
Q ss_pred ECCHHHHHC
Q ss_conf 249237840
Q 000481 1431 YDEPSKLME 1439 (1467)
Q Consensus 1431 ~g~p~~Ll~ 1439 (1467)
.|+|+|+.+
T Consensus 231 ~g~~~e~~~ 239 (254)
T d1g6ha_ 231 EGRGEEEIK 239 (254)
T ss_dssp EEESHHHHH
T ss_pred EECHHHHHH
T ss_conf 966899865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.5e-36 Score=329.29 Aligned_cols=219 Identities=24% Similarity=0.391 Sum_probs=180.9
Q ss_pred CEEEEEEEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH-C
Q ss_conf 408999878885799996200003896189599999499995889999884146798636999795179999788852-1
Q 000481 1214 GRIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRV-K 1292 (1467)
Q Consensus 1214 g~I~f~nvs~~Y~~~~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~-~ 1292 (1467)
--++++|++.+|.. ..+|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+.+..++ .
T Consensus 5 ~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 07999618999899--8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred CEEECCCCCCCCC-CHHHHCCCC--CCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 5786267754665-567714999--9999999999999838814773077876542346888889069999999998606
Q 000481 1293 LSIIPQEPTLFRG-SVRTNLDPL--GLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1293 isiIpQdp~LF~g-TIR~NLdp~--~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1369 (1467)
++++||++.+|+. |+++|+... .....+++.+.++.+- +....+.+..+. ...+||||||||++|||||..
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~----~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--SLFPRLKERLKQ----LGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--HHCHHHHTTTTS----BSSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHCHHHHHHC----CHHHCCHHHHHHHHHHHHHHH
T ss_conf 35567655457763699999988873278889999999999--874176888758----543389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHCC-CCEEEEEECCEEEEECCHHHHHCC
Q ss_conf 998899957888999997999999999774-99379997249100112-498999959889782492378403
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMET 1440 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f-~~~TvI~IAHRl~ti~~-~DrIlVld~G~i~E~g~p~~Ll~~ 1440 (1467)
+|++|+|||||+++|+.+...|.+.|++.. +++|+|+|+|+++.+.. ||||+||++|++++.|+|++++++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.6e-35 Score=319.17 Aligned_cols=214 Identities=24% Similarity=0.405 Sum_probs=179.5
Q ss_pred EEEEEEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEE
Q ss_conf 89998788857999962000038961895999994999958899998841467986369997951799997888521578
Q 000481 1216 IELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSI 1295 (1467)
Q Consensus 1216 I~f~nvs~~Y~~~~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~isi 1295 (1467)
+++ ++.-+|.. ..+ |+||++. +|.+||+|++|||||||+++|.|+.+|++|+|.+||.|+++++.. |++|++
T Consensus 3 l~v-~~~k~~g~---~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGN---FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETT---EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECC---EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-99999899---999-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred ECCCCCCCCC-CHHHHCCC-CCCCC----HHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 6267754665-56771499-99999----999999999838814773077876542346888889069999999998606
Q 000481 1296 IPQEPTLFRG-SVRTNLDP-LGLYS----DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK 1369 (1467)
Q Consensus 1296 IpQdp~LF~g-TIR~NLdp-~~~~s----d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr 1369 (1467)
+||+|.+|+. |++||+.. ....+ ++.+.++++.+++.++....| ..||||||||++||||++.
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----------~~LSGG~kQRvaiAral~~ 143 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----------ARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----------GGSCHHHHHHHHHHHHHTT
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHHHHC
T ss_conf 52314435220155766653233677889999999998638375665794-----------4489999899999877751
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHCC-CCEEEEEECCEEEEECCHHHHHC-CCCHHH
Q ss_conf 998899957888999997999999999774--99379997249100112-49899995988978249237840-398069
Q 000481 1370 RNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLME-TNSSFS 1445 (1467)
Q Consensus 1370 ~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti~~-~DrIlVld~G~i~E~g~p~~Ll~-~~~~f~ 1445 (1467)
+|+||+|||||+++|+.+...+++.|++.. .+.|+|+|+|.++.+.. ||||+||++|+++++|+|+++++ ++....
T Consensus 144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~ 223 (240)
T d2onka1 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHH
T ss_conf 67706752865558879999999999999874397699981899999996999999989999999069998329988999
Q ss_pred HHH
Q ss_conf 999
Q 000481 1446 KLV 1448 (1467)
Q Consensus 1446 ~l~ 1448 (1467)
+++
T Consensus 224 ~fl 226 (240)
T d2onka1 224 EFL 226 (240)
T ss_dssp HHG
T ss_pred HHH
T ss_conf 985
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3e-33 Score=302.32 Aligned_cols=202 Identities=28% Similarity=0.357 Sum_probs=173.9
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEE
Q ss_conf 48999679983899998732212588418809999678988957899998388888872899839-----------0999
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAY 662 (1467)
Q Consensus 594 ~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g-----------~iay 662 (1467)
.|+++|.+++|+. ..+|+|+||++++||+++++|++|||||||+++|.|.++|++|+|.++| .|+|
T Consensus 6 ~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~ 82 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 82 (239)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEE
T ss_conf 4999879999999---9998130678879989999999998299999999758999878799916413547700015899
Q ss_pred ECCCCCCC-CCCHHHHHHCCCC---CCH----HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 82677679-8878899704999---999----999999999430698832999997313679876691799999999987
Q 000481 663 VSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAV 734 (1467)
Q Consensus 663 v~Q~~wi~-~~TireNIlfg~~---~~~----~~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAl 734 (1467)
|+|+|-++ +.||+||+.|+.. +++ ++..++++.+.|.+... .....||||||||++||||+
T Consensus 83 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGGq~QRvaiAraL 151 (239)
T d1v43a3 83 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-----------RYPAQLSGGQRQRVAVARAI 151 (239)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT-----------SCTTTCCSSCHHHHHHHHHH
T ss_pred EEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHC-----------CCHHHCCHHHHHHHHHHHHH
T ss_conf 8003353422209999999998739999999999999998759855660-----------99546999998899997664
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHC-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 159989998087776699999999999997823-99689998269431310-7989999399386833968898607
Q 000481 735 YNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 735 y~~~~i~lLDdp~salD~~~~~~if~~~~~~~l-~~kT~ilvTh~~~~l~~-~d~i~~l~~G~i~~~G~~~el~~~~ 809 (1467)
..+|++++||||||+||+.+...+.+.+..... .++|+|++||+++.... ||+|++|++|+|++.|+.+|+.++.
T Consensus 152 ~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 152 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 04998243068866689899989999999998731980799948999999869999999899999985999998689
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-33 Score=304.73 Aligned_cols=200 Identities=27% Similarity=0.402 Sum_probs=173.8
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEEE
Q ss_conf 8999679983899998732212588418809999678988957899998388888872899839-----------09998
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1467)
Q Consensus 595 i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g-----------~iayv 663 (1467)
|+++|.+++|.. ..+|+|+||++++||+++++||+|||||||+++|.|..++++|+|.++| .|+||
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 77 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEE
T ss_pred CEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEE
T ss_conf 999999999899---99981117788699899999899982999999996587888888999999778886444322234
Q ss_pred CCCCCCC-CCCHHHHHHCCCCCC-------HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 2677679-887889970499999-------99999999994306988329999973136798766917999999999871
Q 000481 664 SQTSWIQ-SGSIRDNILYGKPMD-------KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY 735 (1467)
Q Consensus 664 ~Q~~wi~-~~TireNIlfg~~~~-------~~~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly 735 (1467)
+|+|-++ +.|++||+.|+.... +++..++++...|.+..+..| .+||||||||++||||+.
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHHHH
T ss_conf 334202643337889789998759988999999999997578865664896-----------569999999999999970
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 5998999808777669999999999999782-399689998269431310-798999939938683396889860
Q 000481 736 NDADIYLFDDPFSAVDAHTAATLFNECVMAA-LEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 736 ~~~~i~lLDdp~salD~~~~~~if~~~~~~~-l~~kT~ilvTh~~~~l~~-~d~i~~l~~G~i~~~G~~~el~~~ 808 (1467)
.+|++++||||+++||+.+.+.+++.+.... ..++|+|++||+++.... ||+|++|++|+|++.|+.+|+.+.
T Consensus 147 ~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 147 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 399889975888788988998999999999874298799994899999996999999979999998089999738
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.8e-33 Score=302.56 Aligned_cols=204 Identities=26% Similarity=0.359 Sum_probs=175.3
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 48999679983899998732212588418809999678988957899998388888872899839---------------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 594 ~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g--------------- 658 (1467)
.|+++|.+++|+.+ +..+|+|+||++++||.++|+|++|||||||+++|.|..+|++|+|.++|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred -EEEEECCCCCCC-CCCHHHHHHCCCC---CCH----HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -099982677679-8878899704999---999----9999999994306988329999973136798766917999999
Q 000481 659 -SIAYVSQTSWIQ-SGSIRDNILYGKP---MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 659 -~iayv~Q~~wi~-~~TireNIlfg~~---~~~----~~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~ 729 (1467)
+|+||+|+|-++ +.||+|||.|+.. .++ ++..++++.+.|.+..+..| ..||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCH-----------HHCCHHHHHHHH
T ss_conf 451477304334666657777665567613799999999999986659176664895-----------459999985899
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHH-CCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99987159989998087776699999999999997823-9968999826943131-079899993993868339688986
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 LARAly~~~~i~lLDdp~salD~~~~~~if~~~~~~~l-~~kT~ilvTh~~~~l~-~~d~i~~l~~G~i~~~G~~~el~~ 807 (1467)
||||+..+|+++++|||+++||+.+...+.+....... .+.|+|+|||+++... .||+|++|++|+|++.|+.+|+.+
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 87577604661454478667998998899899999986359879999799999999699999998999999869999986
Q ss_pred CC
Q ss_conf 07
Q 000481 808 AG 809 (1467)
Q Consensus 808 ~~ 809 (1467)
..
T Consensus 231 ~P 232 (242)
T d1oxxk2 231 NP 232 (242)
T ss_dssp SC
T ss_pred CC
T ss_conf 89
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3.4e-33 Score=301.86 Aligned_cols=202 Identities=26% Similarity=0.354 Sum_probs=173.3
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 48999679983899998732212588418809999678988957899998388888872899839---------------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 594 ~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g--------------- 658 (1467)
.|+++|.+++|.. ..+|+|+||++++||+++++|++|||||||+++|.|.++|++|+|.++|
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 1899869999899---9998560668869989999999998099999999648788989899999980356644424532
Q ss_pred --EEEEECCCCCCCC-CCHHHHHHCCC---CCCH----HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf --0999826776798-87889970499---9999----999999999430698832999997313679876691799999
Q 000481 659 --SIAYVSQTSWIQS-GSIRDNILYGK---PMDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRI 728 (1467)
Q Consensus 659 --~iayv~Q~~wi~~-~TireNIlfg~---~~~~----~~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi 728 (1467)
.|+||+|+|-++. .||+||+.|+. ..+. ++..++++.+.|.+.... ....|||||||||
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~-----------~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-----------KPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-----------CGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCC-----------CHHHCCHHHHHHH
T ss_conf 25512002212223101166763306877299989999999999987599667629-----------9334999999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHC-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 9999871599899980877766999999999999978239-9689998269431310-7989999399386833968898
Q 000481 729 QLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELL 806 (1467)
Q Consensus 729 ~LARAly~~~~i~lLDdp~salD~~~~~~if~~~~~~~l~-~kT~ilvTh~~~~l~~-~d~i~~l~~G~i~~~G~~~el~ 806 (1467)
++|||+..+|++++|||||++||+.+...+.+.......+ +.|+|++||+++.... ||+|++|++|+|++.|+.+|+.
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999826998898258876569899989999999998636988999959999999969999999899999985999998
Q ss_pred HCC
Q ss_conf 607
Q 000481 807 LAG 809 (1467)
Q Consensus 807 ~~~ 809 (1467)
.+.
T Consensus 229 ~~P 231 (240)
T d1g2912 229 DKP 231 (240)
T ss_dssp HSC
T ss_pred HCC
T ss_conf 289
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.6e-33 Score=301.63 Aligned_cols=199 Identities=28% Similarity=0.414 Sum_probs=173.1
Q ss_pred EEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEEE
Q ss_conf 8999679983899998732212588418809999678988957899998388888872899839-----------09998
Q 000481 595 VKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYV 663 (1467)
Q Consensus 595 i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g-----------~iayv 663 (1467)
|+++|.+++|.. .+|+|+||++++||+++++|++|||||||+++|.|.++|++|+|.++| .++||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEE
T ss_conf 899989999499----7884337898799899999899982999999996476888788999567346521657405615
Q ss_pred CCCCCCC-CCCHHHHHHCCCC----CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 2677679-8878899704999----9999999999994306988329999973136798766917999999999871599
Q 000481 664 SQTSWIQ-SGSIRDNILYGKP----MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDA 738 (1467)
Q Consensus 664 ~Q~~wi~-~~TireNIlfg~~----~~~~~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly~~~ 738 (1467)
+|++-++ +.||+||+.|+.. -++++..++++...+.+..+ .....||||||||++||||+..+|
T Consensus 78 ~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGG~~QRvaiAraL~~~P 146 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALVTNP 146 (229)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH-----------CCHHHCCHHHHCCHHHHHHHHCCC
T ss_conf 121111746657788888776405538999999999825655575-----------895547999840140304344367
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 89998087776699999999999997823-99689998269431310-798999939938683396889860
Q 000481 739 DIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 739 ~i~lLDdp~salD~~~~~~if~~~~~~~l-~~kT~ilvTh~~~~l~~-~d~i~~l~~G~i~~~G~~~el~~~ 808 (1467)
+++|||||||+||+++...+++....... .+.|+|++||+++.... ||+|++|++|+|++.|+.+|+.++
T Consensus 147 ~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 714434787679989999999999999864796899974999999996999999979999998699999868
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-33 Score=302.82 Aligned_cols=203 Identities=25% Similarity=0.357 Sum_probs=172.4
Q ss_pred EEEEEEEEEECCCCCC-CCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 8999679983899998-732212588418809999678988957899998388888872899839---------------
Q 000481 595 VKIQEGNFSWDPELAI-PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 595 i~~~~~~f~w~~~~~~-~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g--------------- 658 (1467)
|+++|.+++|+.+... .+|+|+||++++||+++|+|++|||||||+++|.|..++++|+|.++|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred -EEEEECCCCCCCC-CCHHHHHHCC-----CCCC--HHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -0999826776798-8788997049-----9999--99999999994306988329999973136798766917999999
Q 000481 659 -SIAYVSQTSWIQS-GSIRDNILYG-----KPMD--KARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQ 729 (1467)
Q Consensus 659 -~iayv~Q~~wi~~-~TireNIlfg-----~~~~--~~~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~ 729 (1467)
+++||+|+|-+++ .||+|||.|+ .+-+ +++..+.++.+.|.+..+. ....|||||||||+
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~-----------~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSS-----------CBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHC-----------CHHHCCHHHHHHHH
T ss_conf 1664302252227996499999999998499989999999999997699035548-----------94349999998999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 999871599899980877766999999999999978239-9689998269431310-79899993993868339688986
Q 000481 730 LARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALE-KKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLL 807 (1467)
Q Consensus 730 LARAly~~~~i~lLDdp~salD~~~~~~if~~~~~~~l~-~kT~ilvTh~~~~l~~-~d~i~~l~~G~i~~~G~~~el~~ 807 (1467)
||||+..+|+++++||||++||+.+...+++.+.....+ ++|+|+|||+++.... ||+|++|++|+|++.|+.+|+.+
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred C
Q ss_conf 0
Q 000481 808 A 808 (1467)
Q Consensus 808 ~ 808 (1467)
+
T Consensus 231 ~ 231 (240)
T d3dhwc1 231 H 231 (240)
T ss_dssp S
T ss_pred C
T ss_conf 8
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.7e-32 Score=291.91 Aligned_cols=202 Identities=26% Similarity=0.408 Sum_probs=174.6
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 48999679983899998732212588418809999678988957899998388888872899839---------------
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 594 ~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g--------------- 658 (1467)
.++++|.+++|.. ..+|+||||++++||+++|+|++|||||||+++|.|..++++|+|.++|
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 6999978999899---9988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -----------EEEEECCCCCCCC-CCHHHHHHCC----CCCCH----HHHHHHHHHHCCHHHHH-CCCCCCCCCCCCCC
Q ss_conf -----------0999826776798-8788997049----99999----99999999943069883-29999973136798
Q 000481 659 -----------SIAYVSQTSWIQS-GSIRDNILYG----KPMDK----ARYDKAIKACALDKDIN-NFDHGDLTEIGQRG 717 (1467)
Q Consensus 659 -----------~iayv~Q~~wi~~-~TireNIlfg----~~~~~----~~y~~vi~~c~L~~dl~-~l~~GD~T~IGe~G 717 (1467)
+++||+|+|-+++ .|+.|||.++ ...++ ++..++++.+.+.+... ..|
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p----------- 147 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP----------- 147 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----------
T ss_conf 517679997454489983323141101021365657876299989999999999998299524430682-----------
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHC-CCEEEEEECCEE
Q ss_conf 7669179999999998715998999808777669999999999999782399689998269431310-798999939938
Q 000481 718 LNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQI 796 (1467)
Q Consensus 718 ~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~~~~~l~~kT~ilvTh~~~~l~~-~d~i~~l~~G~i 796 (1467)
.+||||||||++||||+..+|++++||||+++||+.+.+.|++.......+++|+|+|||+++.+.. ||+|++|.+|+|
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~i 227 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 20567788898999998439987885245556887888899876554103688338994899999986999999979999
Q ss_pred EEECCHHHHHHCC
Q ss_conf 6833968898607
Q 000481 797 TQSGNYQELLLAG 809 (1467)
Q Consensus 797 ~~~G~~~el~~~~ 809 (1467)
++.|+.+|++.+.
T Consensus 228 v~~g~~~ev~~~P 240 (258)
T d1b0ua_ 228 EEEGDPEQVFGNP 240 (258)
T ss_dssp EEEECHHHHHHSC
T ss_pred EEECCHHHHHHCC
T ss_conf 9984999998389
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.2e-32 Score=294.82 Aligned_cols=198 Identities=27% Similarity=0.377 Sum_probs=161.9
Q ss_pred EEEEEEEEEECCCCC-CCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------------
Q ss_conf 899967998389999-8732212588418809999678988957899998388888872899839---------------
Q 000481 595 VKIQEGNFSWDPELA-IPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------- 658 (1467)
Q Consensus 595 i~~~~~~f~w~~~~~-~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g--------------- 658 (1467)
|+++|.+++|+.+.. ..+|+|+||++++||+++|+|++|||||||+++|.|..+|++|+|.++|
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred --EEEEECCCCCCC-CCCHHHHHHCCC------CCCH-HHHHHHHH---HHCCHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf --099982677679-887889970499------9999-99999999---9430698832999997313679876691799
Q 000481 659 --SIAYVSQTSWIQ-SGSIRDNILYGK------PMDK-ARYDKAIK---ACALDKDINNFDHGDLTEIGQRGLNLSGGQK 725 (1467)
Q Consensus 659 --~iayv~Q~~wi~-~~TireNIlfg~------~~~~-~~y~~vi~---~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQk 725 (1467)
.|+||+|+|-++ +.||+||+.++. ..+. ++.+++.+ ...|.+.+ ....-.+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~p~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHH----------HCCCHHHCCHHHH
T ss_conf 555778804124176866888775788872247899999999999988762423455----------3488023899999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHCCCEEEEEECCEEEEECCH
Q ss_conf 999999987159989998087776699999999999997823-99689998269431310798999939938683396
Q 000481 726 QRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKKTVILVTHQVEFLSEVDRILVLEGGQITQSGNY 802 (1467)
Q Consensus 726 qRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~~~~~l-~~kT~ilvTh~~~~l~~~d~i~~l~~G~i~~~G~~ 802 (1467)
|||+||||+..+|++++||||||+||+.+...+++.+..... .++|+|+|||+++....||+|++|++|+|+++|+.
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 999987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.2e-31 Score=286.03 Aligned_cols=207 Identities=25% Similarity=0.360 Sum_probs=169.2
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------
Q ss_conf 9848999679983899998732212588418809999678988957899998388888872899839-------------
Q 000481 592 DRSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------- 658 (1467)
Q Consensus 592 ~~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g------------- 658 (1467)
+..++++|.+++|.. ..+|+|+||++++||+++++||||||||||+++|.|.+++++|+|.++|
T Consensus 4 d~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r 80 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp SEEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 607999618999899---88883025788899799999999985999999996788888038984244344660888887
Q ss_pred -EEEEECCCCCCCC-CCHHHHHHCCCC--CCHHHHHHHH-HHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf -0999826776798-878899704999--9999999999-9943069883299999731367987669179999999998
Q 000481 659 -SIAYVSQTSWIQS-GSIRDNILYGKP--MDKARYDKAI-KACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARA 733 (1467)
Q Consensus 659 -~iayv~Q~~wi~~-~TireNIlfg~~--~~~~~y~~vi-~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARA 733 (1467)
.++|+||++-++. .|++||+.++.. .+.+..++.+ +...+...++.. ......+||||||||+++|||
T Consensus 81 ~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~LSGG~~Qrv~iAra 153 (240)
T d1ji0a_ 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER-------LKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTT-------TTSBSSSSCHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHH-------HHCCHHHCCHHHHHHHHHHHH
T ss_conf 4235567655457763699999988873278889999999999874176888-------758543389999999999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 71599899980877766999999999999978239968999826943131-0798999939938683396889860
Q 000481 734 VYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 734 ly~~~~i~lLDdp~salD~~~~~~if~~~~~~~l~~kT~ilvTh~~~~l~-~~d~i~~l~~G~i~~~G~~~el~~~ 808 (1467)
+..+|++++||||+++||+...+.+++.......+++|+|++||+++... .||+|++|++|+|++.|+.+|+.++
T Consensus 154 L~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9829987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-32 Score=295.65 Aligned_cols=209 Identities=20% Similarity=0.294 Sum_probs=180.4
Q ss_pred EEEEEEEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 08999878885799996200003896189599999499995889999884146798636999795179999788852157
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~is 1294 (1467)
-++++||+.+| +|+||||+|++||.+||+|++|||||||+++|.|+. |.+|+|.++|.|+...+.+.++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCCC-CCCCHHHHCCC--CCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--
Q ss_conf 86267754-66556771499--99999999999999838814773077876542346888889069999999998606--
Q 000481 1295 IIPQEPTL-FRGSVRTNLDP--LGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLK-- 1369 (1467)
Q Consensus 1295 iIpQdp~L-F~gTIR~NLdp--~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr-- 1369 (1467)
+++|+... |..++.+|+.. ......+.+.++++..++.+... ....+||||||||+++|||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTT-----------SBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHC-----------CCHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 451213577442098876410014668999999998659876767-----------684456998899999999998517
Q ss_pred -----CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHCC-CCEEEEEECCEEEEECCHHHHHCCC
Q ss_conf -----99889995788899999799999999977-499379997249100112-4989999598897824923784039
Q 000481 1370 -----RNRILVLDEANASIDSATDAILQRIIRQE-FSNCTVITVAHRVPTVID-SDMVMVLSYGKLLEYDEPSKLMETN 1441 (1467)
Q Consensus 1370 -----~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~-f~~~TvI~IAHRl~ti~~-~DrIlVld~G~i~E~g~p~~Ll~~~ 1441 (1467)
+|+||+|||||++||+.+...+.+.|++. .+++|+|+++|+++.+.+ ||||++|++|++++.|+|++++.++
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 1338998899971877778989999999999999867999999967799999979999999799899988999981886
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.3e-31 Score=287.93 Aligned_cols=200 Identities=22% Similarity=0.350 Sum_probs=166.8
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC--------------E
Q ss_conf 48999679983899998732212588418809999678988957899998388888872899839--------------0
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------------S 659 (1467)
Q Consensus 594 ~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g--------------~ 659 (1467)
-++++|.+.+|+. ..+|+||||++++||+++++|+||||||||+++|.|.+++++|+|.++| .
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEECCCCCCC-CCCHHHHHHCCCCC-----------------CHHHHH---HHHHHHCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99982677679-88788997049999-----------------999999---9999943069883299999731367987
Q 000481 660 IAYVSQTSWIQ-SGSIRDNILYGKPM-----------------DKARYD---KAIKACALDKDINNFDHGDLTEIGQRGL 718 (1467)
Q Consensus 660 iayv~Q~~wi~-~~TireNIlfg~~~-----------------~~~~y~---~vi~~c~L~~dl~~l~~GD~T~IGe~G~ 718 (1467)
|+|++|+|-++ +.|+.||+.+|... +++..+ ++++...+... ...+..
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~ 149 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-----------YDRKAG 149 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-----------TTSBGG
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH-----------CCCCHH
T ss_conf 872577642478874232143013330345045665421353289999999999876196302-----------059535
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-CCCEEEEEECCEEE
Q ss_conf 66917999999999871599899980877766999999999999978239968999826943131-07989999399386
Q 000481 719 NLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLS-EVDRILVLEGGQIT 797 (1467)
Q Consensus 719 ~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~~~~~l~~kT~ilvTh~~~~l~-~~d~i~~l~~G~i~ 797 (1467)
+||||||||+++|||+..+|++++||||+++||+.....+++.......+|+|+|++||+++.+. .||+|++|++|+|+
T Consensus 150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv 229 (254)
T d1g6ha_ 150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 229 (254)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 69918888999999997592723243976569999999999999999978998999947699999869999999699899
Q ss_pred EECCHHHHHH
Q ss_conf 8339688986
Q 000481 798 QSGNYQELLL 807 (1467)
Q Consensus 798 ~~G~~~el~~ 807 (1467)
.+|+.+|+.+
T Consensus 230 ~~g~~~e~~~ 239 (254)
T d1g6ha_ 230 AEGRGEEEIK 239 (254)
T ss_dssp EEEESHHHHH
T ss_pred EEECHHHHHH
T ss_conf 9966899865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.1e-31 Score=281.59 Aligned_cols=202 Identities=22% Similarity=0.312 Sum_probs=170.3
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------EE
Q ss_conf 848999679983899998732212588418809999678988957899998388888872899839------------09
Q 000481 593 RSVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG------------SI 660 (1467)
Q Consensus 593 ~~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g------------~i 660 (1467)
++|+++|.+.+|.. .++|+|+||++++||+++++|++|||||||+++|.|.++|.+|+|.++| .+
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHE
T ss_conf 97899958999999---999806256884897999999999999999999966988788879998672446839887218
Q ss_pred EEECCCCCCC-CCCHHHHHHCCCC---CCHH----HHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9982677679-8878899704999---9999----999999994306988329999973136798766917999999999
Q 000481 661 AYVSQTSWIQ-SGSIRDNILYGKP---MDKA----RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLAR 732 (1467)
Q Consensus 661 ayv~Q~~wi~-~~TireNIlfg~~---~~~~----~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LAR 732 (1467)
+||||++.++ +.|++||+.|... .+.+ +.+++++.+.|.+.. ..+..+||||||||+++||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-----------KDRVSTYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG-----------GSBGGGCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------HHHHHHCCHHHHHHHHHHH
T ss_conf 67500154687866778889899861799899999999999867978888-----------5045337998989999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 8715998999808777669999999999999782399689998269431310-798999939938683396889860
Q 000481 733 AVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 733 Aly~~~~i~lLDdp~salD~~~~~~if~~~~~~~l~~kT~ilvTh~~~~l~~-~d~i~~l~~G~i~~~G~~~el~~~ 808 (1467)
|+..+|++++||||+++||+...+.+++-......+++|+|++||+++.+.. ||+|++|++|+|+..|+++|+.+.
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 98659998873379889798999999999999996599899995989999996999999989999999289999865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.97 E-value=1.1e-30 Score=280.01 Aligned_cols=185 Identities=30% Similarity=0.448 Sum_probs=155.1
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------EEEEECCCCCCCC-CCHHHHHH
Q ss_conf 32212588418809999678988957899998388888872899839-----------0999826776798-87889970
Q 000481 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG-----------SIAYVSQTSWIQS-GSIRDNIL 679 (1467)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g-----------~iayv~Q~~wi~~-~TireNIl 679 (1467)
.+ |+||+++ +++++++||+|||||||+++|.|.++|++|+|.++| .|+||+|++-++. .||+|||.
T Consensus 15 ~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 15 RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 99-9999749-979999979998099999999739998962899999998869989928522523144352201557666
Q ss_pred CCCC-CCH----HHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf 4999-999----99999999943069883299999731367987669179999999998715998999808777669999
Q 000481 680 YGKP-MDK----ARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHT 754 (1467)
Q Consensus 680 fg~~-~~~----~~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~ 754 (1467)
||.. .++ ++..++++.+.|.+.. ..+...|||||||||++|||+..+|++++||||+|+||+++
T Consensus 93 ~~l~~~~~~~~~~~v~~~l~~~gl~~~~-----------~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~ 161 (240)
T d2onka1 93 YGLRNVERVERDRRVREMAEKLGIAHLL-----------DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT 161 (240)
T ss_dssp TTCTTSCHHHHHHHHHHHHHTTTCTTTT-----------TCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------HCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHH
T ss_conf 5323367788999999999863837566-----------57944489999899999877751677067528655588799
Q ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHHHC-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 9999999997823-99689998269431310-7989999399386833968898607
Q 000481 755 AATLFNECVMAAL-EKKTVILVTHQVEFLSE-VDRILVLEGGQITQSGNYQELLLAG 809 (1467)
Q Consensus 755 ~~~if~~~~~~~l-~~kT~ilvTh~~~~l~~-~d~i~~l~~G~i~~~G~~~el~~~~ 809 (1467)
...+++....... .+.|+|++||+++.+.. ||+|++|++|++++.|+.+|+++..
T Consensus 162 ~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~ 218 (240)
T d2onka1 162 KGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCC
T ss_conf 999999999998743976999818999999969999999899999990699983299
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=2.1e-30 Score=277.39 Aligned_cols=190 Identities=28% Similarity=0.410 Sum_probs=160.6
Q ss_pred EEEEEEEEEEECCCCCCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 08999878885799996200003896189599999499995889999884146798636999795179999788852157
Q 000481 1215 RIELRQLKIRYRPNAPLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLS 1294 (1467)
Q Consensus 1215 ~I~f~nvs~~Y~~~~~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~is 1294 (1467)
.|+++|++++|+ .+||+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+ +|.+++
T Consensus 2 ~lev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred EEEEEEEEEEEC---CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCEE
T ss_conf 599998999939---928842088985998999999999719999999966205677889999896267-----367089
Q ss_pred EECCCCCCCCC-CHHHHCC----CCC-CCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 86267754665-5677149----999-99999999999983881477307787654234688888906999999999860
Q 000481 1295 IIPQEPTLFRG-SVRTNLD----PLG-LYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLL 1368 (1467)
Q Consensus 1295 iIpQdp~LF~g-TIR~NLd----p~~-~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL 1368 (1467)
++||++.++.. |+++|+. .++ ..++++++++++..++.+ ++..+ .+||+|||||+++|||++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL----GELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG----GGSCHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCC----CCCCCCHHHHHHHHHHHH
T ss_conf 995013578882899999999975488637999999998748856--------30126----868971888899999886
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCEEEEEEC
Q ss_conf 699889995788899999799999999977499379997249100112498999959
Q 000481 1369 KRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMVLSY 1425 (1467)
Q Consensus 1369 r~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f~~~TvI~IAHRl~ti~~~DrIlVld~ 1425 (1467)
.+|++++|||||+++|.++...+.+.|++..++.++++|+|+- .+..||++.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 4998999868620169999999999999998679999999916-2544161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=8.2e-28 Score=254.76 Aligned_cols=195 Identities=24% Similarity=0.384 Sum_probs=162.5
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE-------------E
Q ss_conf 489996799838999987322125884188099996789889578999983888888728998390-------------9
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS-------------I 660 (1467)
Q Consensus 594 ~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g~-------------i 660 (1467)
.++++|++. ...|++|||++++||+++++|+||||||||+++|.|.. +.+|+|.++|. .
T Consensus 3 il~~~dv~~-------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAE-------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECC-------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCC-------CCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 999987415-------71555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCCC-CCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-
Q ss_conf 998267767-98878899704999--99999999999943069883299999731367987669179999999998715-
Q 000481 661 AYVSQTSWI-QSGSIRDNILYGKP--MDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYN- 736 (1467)
Q Consensus 661 ayv~Q~~wi-~~~TireNIlfg~~--~~~~~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly~- 736 (1467)
+|++|+.-. +..++.+++.++.. ...++.+++++.+.+.+. ++.+..+||||||||+++|||+.+
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 24512135774420988764100146689999999986598767-----------6768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCHH-HCCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf ------99899980877766999999999999978-23996899982694313-10798999939938683396889860
Q 000481 737 ------DADIYLFDDPFSAVDAHTAATLFNECVMA-ALEKKTVILVTHQVEFL-SEVDRILVLEGGQITQSGNYQELLLA 808 (1467)
Q Consensus 737 ------~~~i~lLDdp~salD~~~~~~if~~~~~~-~l~~kT~ilvTh~~~~l-~~~d~i~~l~~G~i~~~G~~~el~~~ 808 (1467)
+|++++||||+++||+...+.+.+ .+.. ..+++|+|++||+++.+ ..||+|++|++|++++.|+.+|++..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~-~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDK-ILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHH-HHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 713389988999718777789899999999-9999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.94 E-value=6.4e-26 Score=238.18 Aligned_cols=181 Identities=25% Similarity=0.405 Sum_probs=143.9
Q ss_pred CEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC--------EEEEECC
Q ss_conf 48999679983899998732212588418809999678988957899998388888872899839--------0999826
Q 000481 594 SVKIQEGNFSWDPELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYG--------SIAYVSQ 665 (1467)
Q Consensus 594 ~i~~~~~~f~w~~~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g--------~iayv~Q 665 (1467)
.++++|.+++|+ .++|+|+||++++|++++|+|+||||||||+++|.|.++|.+|+|.++| .++|+||
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~ 77 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 77 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEE
T ss_conf 599998999939----9288420889859989999999997199999999662056778899998962673670899950
Q ss_pred CCCCC-CCCHHHHHH-----CCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 77679-887889970-----499999999999999943069883299999731367987669179999999998715998
Q 000481 666 TSWIQ-SGSIRDNIL-----YGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDAD 739 (1467)
Q Consensus 666 ~~wi~-~~TireNIl-----fg~~~~~~~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly~~~~ 739 (1467)
++.++ +.|++||+. +|...++++..+.++...+ +. +.++-.+||||||||+++|||++.+|+
T Consensus 78 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~------~~------~~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 78 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV------LD------LKKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC------CC------TTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC------CC------CCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 135788828999999999754886379999999987488------56------301268689718888999998864998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEEE
Q ss_conf 99980877766999999999999978239968999826943131079899993
Q 000481 740 IYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVLE 792 (1467)
Q Consensus 740 i~lLDdp~salD~~~~~~if~~~~~~~l~~kT~ilvTh~~~~l~~~d~i~~l~ 792 (1467)
+++||||+++||+.+.+.+++.......++.++|+.+|+ .+..||.+.+|.
T Consensus 146 llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~--~l~~~D~~~~l~ 196 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE--ELSYCDVNENLH 196 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS--CCTTSSEEEEGG
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC--HHHHCCHHHHEE
T ss_conf 999868620169999999999999998679999999916--254416123401
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.90 E-value=2.9e-17 Score=162.33 Aligned_cols=306 Identities=11% Similarity=0.033 Sum_probs=230.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997687999999999999999999999999999703898445789999999999999999999999999999999999
Q 000481 271 ITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEENLQEGLSIVGCLIITKVVESFTQRHCFFGSRRSGMRMR 350 (1467)
Q Consensus 271 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~ir 350 (1467)
..+.|++.++...++.++..++....|++++.+++....+. +...-+.+++.+++..++..++.....+...+.+.++.
T Consensus 10 ~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (319)
T d3b60a2 10 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT-DRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVV 88 (319)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST-THHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999999999999999999874468-77899999999999999764533546654434310001
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999738933367899889999999699999307779-88999999999999999999997889999999999
Q 000481 351 SALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPFW-FHLTWSLALQLFLAIGVLFGVVGLGALPGLVLFLI 429 (1467)
Q Consensus 351 ~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~~i~~~~~~-~~~~w~~plqi~i~~~~L~~~lG~~~l~gl~v~~i 429 (1467)
..+...+|+|.++++....++.++|++++.++.|++.+.+.... ........+.++.+++.++..-...++..++.+++
T Consensus 89 ~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~ 168 (319)
T d3b60a2 89 MTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPI 168 (319)
T ss_dssp HHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 10004777765010111102333221111121212100001111120011233445668888876520021025668999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998999999999999999999999999999995699999816199999999999999999999999999999899989
Q 000481 430 CGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAYGTVIYWM 509 (1467)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~~~~~~~~ 509 (1467)
...+.....++..+..++..+..++..+...|.++|++++|.+++|+.+.++..+..++..+...+.....+........
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (319)
T d3b60a2 169 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 248 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99988766668778789887644567788777624872353111010245666665313567788888777740640100
Q ss_pred HHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999-99999999847977768899999999999999999999999999999999999999843778
Q 000481 510 SPTIIS-SVIFLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDHE 577 (1467)
Q Consensus 510 ~p~~v~-~~~f~~~~l~~~~~Lt~~~~ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~e 577 (1467)
...+.. .+.+.+..+..++.+|+|.+++.+.+...+..|+..++..++.+.++.+|.+|+.++|+.|+
T Consensus 249 ~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 249 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 000023799999999998099789999999999999999999999999999999999999999966998
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.89 E-value=8.1e-18 Score=167.24 Aligned_cols=308 Identities=12% Similarity=0.090 Sum_probs=237.3
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999600348999999999999885333467888630367--661---24899999999899999999999999999
Q 000481 888 PFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQIP--KIT---SGILIGVYAGVSTASAVFVYFRSFFAAHL 962 (1467)
Q Consensus 888 ~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~--~~~---~~~~l~iy~~l~~~~~~~~~~~~~~~~~~ 962 (1467)
.+++|++..++.. .+.+++.+...+.....++.+....+.. +.+ ...+..++.++.++..++.+.+.+.....
T Consensus 6 rl~~~~~~~k~~l--~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 83 (319)
T d3b60a2 6 RLWPTIAPFKAGL--IVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWV 83 (319)
T ss_dssp HHHHHHGGGHHHH--HHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999--99999999999999999999999999874468778999999999999997645335466544343
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999986145644444560137999720265866100488999999999999999999988699999999
Q 000481 963 GLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVTWQVLVVAI 1042 (1467)
Q Consensus 963 ~~~~s~~l~~~l~~~il~~p~~ffd~~p~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 1042 (1467)
+.+...++++++++++++.|++||+++++|++++|+++|++.+...+...+...+..++.+++.++.++..+|.+.++.+
T Consensus 84 ~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l 163 (319)
T d3b60a2 84 SGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILV 163 (319)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 10001100047777650101111023332211111212121000011111200112334456688888765200210256
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998632242057699997410699987052799999999999999878999998988999
Q 000481 1043 FAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHTNGVMEWLI 1122 (1467)
Q Consensus 1043 ~~~~~~~~~~~~y~~~sr~l~rl~~~~~spi~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~~~~~~wl~ 1122 (1467)
...+++..+..++.+..+...+......+...++..|.++|+.+||+|+.|+.+.+++.+..+...+..........+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (319)
T d3b60a2 164 VLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISD 243 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 68999999887666687787898876445677887776248723531110102456666653135677888887777406
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999999999-999876267436879999999999999999999999999999766999999843199999
Q 000481 1123 LRVEALQNLTLFTAA-LFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHIPPEP 1197 (1467)
Q Consensus 1123 ~rl~~i~~~~~~~~~-~~~~l~~~~~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~~~~~~~~e~ 1197 (1467)
....++..+...... ........|.+++|.+...+.|...+..++..+...+..+.+..+|.+|+.|++|.|+|+
T Consensus 244 ~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E~ 319 (319)
T d3b60a2 244 PIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK 319 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 4010000002379999999999809978999999999999999999999999999999999999999996699899
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.87 E-value=2.3e-17 Score=163.33 Aligned_cols=306 Identities=14% Similarity=0.129 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CH---HHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999976879999999999999999999999999997038984-45---789--99999999999999999999999999
Q 000481 270 VITNVYLKENIFIAICALLRTIAVVVGPLLLYAFVNYSNRGEE-NL---QEG--LSIVGCLIITKVVESFTQRHCFFGSR 343 (1467)
Q Consensus 270 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~---~~g--~~l~~~l~~~~~~~~~~~~~~~~~~~ 343 (1467)
...+.|++.++...++.++..++....|++++.+++...++.. .. ... +.++.++++..++..++.....+...
T Consensus 7 ~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (323)
T d2hyda2 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (323)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999998626774215568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999973893336789988999999969999930777-98899999999999999999999788999
Q 000481 344 RSGMRMRSALMVAVYQKQLKLSSLGRKKHSTGEIVNYIAVDAYRMGEFPF-WFHLTWSLALQLFLAIGVLFGVVGLGALP 422 (1467)
Q Consensus 344 ~~g~~ir~~L~~~Iy~K~L~ls~~~~~~~~~G~ivnlms~D~~~i~~~~~-~~~~~w~~plqi~i~~~~L~~~lG~~~l~ 422 (1467)
+.+.+++..+...+|+|.++++....++.++|+++|.++.|++.+.+... .+...+...+.++++++.++..-...++.
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 166 (323)
T d2hyda2 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99985567788887665402332100012221100011113321001113454201114665334654400001468889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999899999999999999999999999999999569999981619999999999999999999999999999
Q 000481 423 GLVLFLICGLLNVPFAKILQKCQSEFMIAQDERLRSTSEILNNMKIIKLQSWEEKFKSLIESRREKEFKWLSEAQLRKAY 502 (1467)
Q Consensus 423 gl~v~~i~~~~~~~~~~~~~~~~~~~m~~~D~R~~~~~E~L~~Ik~IK~~~wE~~f~~~i~~~R~~El~~l~~~~~~~~~ 502 (1467)
.++++.+...+.....+...+..++..+..++..+.+.|.++|+++||.+++|+.+.++..+..++..+...+.......
T Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~ 246 (323)
T d2hyda2 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246 (323)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99988777777764123332026778989999997878875597023467641110023302231111015677652000
Q ss_pred HHHHHHHHHHHHHH-HH-HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98999899999999-99-9999984797776889999999999999999999999999999999999999984377
Q 000481 503 GTVIYWMSPTIISS-VI-FLGCALTGSAPLNASTIFTVLATLRSMGEPVRMIPEALSIMIQVKVSFDRINAFLLDH 576 (1467)
Q Consensus 503 ~~~~~~~~p~~v~~-~~-f~~~~l~~~~~Lt~~~~ft~l~lf~~l~~pl~~lp~~i~~~~~a~vS~~Ri~~fL~~~ 576 (1467)
..........+... +. ++++.... +.+++|.+++.+.++..+..|+..++..+..+.++.+|.+|+.++|++|
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~~-g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e 321 (323)
T d2hyda2 247 SFAAINTVTDIGPIIVIGVGAYLAIS-GSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-TSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 01111101205589999999999984-9988999999999999999999999999999999999999999997799
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.85 E-value=1.6e-17 Score=164.74 Aligned_cols=308 Identities=15% Similarity=0.171 Sum_probs=230.9
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCH---HH-----HHHHHHHHHHHHHHHHHH
Q ss_conf 9999999960034899999999999988533346788863036----76612---48-----999999998999999999
Q 000481 887 KPFMDYLNVSKGMSLLCLGVLAQSGFVGLQAAATYWLAYAIQI----PKITS---GI-----LIGVYAGVSTASAVFVYF 954 (1467)
Q Consensus 887 ~~y~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~----~~~~~---~~-----~l~iy~~l~~~~~~~~~~ 954 (1467)
+.+++|++..+...... +++.+...+.....++.++...+. ..... .. ....+.++.+...++.+.
T Consensus 3 Krl~~~~k~~k~~~~~~--~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 3 KRYLQFVKPYKYRIFAT--IIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHGGGHHHHHHH--HHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999--9999999999999999999999998626774215568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999861456444445601379997202658661004889999999999999999999886
Q 000481 955 RSFFAAHLGLKASKAFFSGFTNSIFKAPMLFFDSTPVGRILTRLSSDLSILDFDIPFSIVFVAASGTELLAIIGIMTFVT 1034 (1467)
Q Consensus 955 ~~~~~~~~~~~~s~~l~~~l~~~il~~p~~ffd~~p~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 1034 (1467)
+.+.....+.+...+++.++++++++.|++|||+.++|++++|+++|++.++..+...+...+..++.++..+++++..+
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999985567788887665402332100012221100011113321001113454201114665334654400001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999986322420576999974106999870527999999999999998789999
Q 000481 1035 WQVLVVAIFAMVAVRFVQRYYIATARELIRINGTTKAPVMNYTAETSQGVVTIRAFNMVDRFFQNYLKLVDIDASLFFHT 1114 (1467)
Q Consensus 1035 ~~~~~v~i~~~~~~~~~~~~y~~~sr~l~rl~~~~~spi~~~~~Etl~G~~tIraf~~~~~f~~~~~~~~d~~~~~~~~~ 1114 (1467)
|.+.++.++..+++..+...+.+..++..+......+...+++.|+++|+.+||+|+.++.+.+++.+..+...+.....
T Consensus 161 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~ 240 (323)
T d2hyda2 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (323)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHH
T ss_conf 46888999988777777764123332026778989999997878875597023467641110023302231111015677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9898899999999999999999-999987626743687999999999999999999999999999976699999984319
Q 000481 1115 NGVMEWLILRVEALQNLTLFTA-ALFLVLIPRGYVAPGLVGLSLSYAFTLTGTQVFLSRWYCYLANYIISVERIKQFMHI 1193 (1467)
Q Consensus 1115 ~~~~~wl~~rl~~i~~~~~~~~-~~~~~l~~~~~i~~g~~g~~l~y~~~l~~~l~~~~~~~~~le~~~~sveRi~~~~~~ 1193 (1467)
.....+.......+..+..... ++.......|.+++|.+...+.+...+..++..+...+.++.....|.+|+.|++|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~ 320 (323)
T d2hyda2 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 65200001111101205589999999999984998899999999999999999999999999999999999999999779
Q ss_pred CCC
Q ss_conf 999
Q 000481 1194 PPE 1196 (1467)
Q Consensus 1194 ~~e 1196 (1467)
++|
T Consensus 321 e~e 323 (323)
T d2hyda2 321 DYD 323 (323)
T ss_dssp CCS
T ss_pred CCC
T ss_conf 998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.27 E-value=2.3e-13 Score=128.30 Aligned_cols=170 Identities=12% Similarity=0.081 Sum_probs=117.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99999499995889999884146798636999795179999788852157862677546655677149999999999999
Q 000481 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDDEIWK 1324 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~~~sd~ei~~ 1324 (1467)
||+|+|++|||||||++.+.+.+++..|.+.+++.+....+...........++.+.++..+...+... +.+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------- 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLV-GSY------- 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEE-TTE-------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443-023-------
Q ss_pred HHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCC
Q ss_conf 999838814773077876542346888889069999999998606998899957888999--997999999999774993
Q 000481 1325 ALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASID--SATDAILQRIIRQEFSNC 1402 (1467)
Q Consensus 1325 aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTs~lD--~~Td~~Iq~~ir~~f~~~ 1402 (1467)
+.+... ..+|+|++|+.++++++.++|+++++||++...+ .+....+.+.+++ .++
T Consensus 74 ----------------~~~~~~----~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~~ 131 (178)
T d1ye8a1 74 ----------------GVNVQY----FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNV 131 (178)
T ss_dssp ----------------EECHHH----HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTS
T ss_pred ----------------HCCCCH----HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCC--CCC
T ss_conf ----------------037625----6653201378999999740997423027773100457999999987505--797
Q ss_pred EEEEECCCCHHHCCCCEEEEEECCEEEEECCHHHHHCCCCHHHHHH
Q ss_conf 7999724910011249899995988978249237840398069999
Q 000481 1403 TVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSKLMETNSSFSKLV 1448 (1467)
Q Consensus 1403 TvI~IAHRl~ti~~~DrIlVld~G~i~E~g~p~~Ll~~~~~f~~l~ 1448 (1467)
|+|.++|+......+|++..+++|++++-+... ++..+.+.+
T Consensus 132 ~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~n----rd~~~~~i~ 173 (178)
T d1ye8a1 132 NVVATIPIRDVHPLVKEIRRLPGAVLIELTPEN----RDVILEDIL 173 (178)
T ss_dssp EEEEECCSSCCSHHHHHHHTCTTCEEEECCTTT----TTTHHHHHH
T ss_pred EEEEEECCHHHHHHHCEEEEEECCEEEEECCCC----HHHHHHHHH
T ss_conf 899997447789863659987199999989964----788999999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.10 E-value=2.2e-09 Score=93.34 Aligned_cols=72 Identities=19% Similarity=0.289 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHCCCCEEEEE
Q ss_conf 889069999999998----606998899957888999997999999999774-993799972491001124989999
Q 000481 1352 NWSAGQRQLFCLGRV----LLKRNRILVLDEANASIDSATDAILQRIIRQEF-SNCTVITVAHRVPTVIDSDMVMVL 1423 (1467)
Q Consensus 1352 nLS~GQrQll~LARA----LLr~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f-~~~TvI~IAHRl~ti~~~DrIlVl 1423 (1467)
.+|||||.+++||-. ...+++|++||||++++|+++...+-+.|++.. .++-+|+|||+..+...+|+++..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.91 E-value=6.1e-11 Score=107.00 Aligned_cols=147 Identities=13% Similarity=0.043 Sum_probs=98.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE--EEEECC-----------CCCCCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 99996789889578999983888888728998390--999826-----------77679887889970499999999999
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGS--IAYVSQ-----------TSWIQSGSIRDNILYGKPMDKARYDK 691 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g~--iayv~Q-----------~~wi~~~TireNIlfg~~~~~~~y~~ 691 (1467)
.++|+|++|||||||+++|+|++++..|.+...+. ..+-.| .+.+...+...+..+++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS--------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT---------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302---------
Q ss_pred HHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCC
Q ss_conf 9999430698832999997313679876691799999999987159989998087776699999999999997823-996
Q 000481 692 AIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL-EKK 770 (1467)
Q Consensus 692 vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~~~~~l-~~k 770 (1467)
..+......+++|+++|.+++++...+|+++++|||....+. .....+.+...+. .++
T Consensus 73 -------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~~ 131 (178)
T d1ye8a1 73 -------------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPNV 131 (178)
T ss_dssp -------------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTTS
T ss_pred -------------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCCCCC
T ss_conf -------------------303762566532013789999997409974230277731004--57999999987505797
Q ss_pred EEEEECCCCCHHHCCCEEEEEECCEEEEECC
Q ss_conf 8999826943131079899993993868339
Q 000481 771 TVILVTHQVEFLSEVDRILVLEGGQITQSGN 801 (1467)
Q Consensus 771 T~ilvTh~~~~l~~~d~i~~l~~G~i~~~G~ 801 (1467)
|+|+++|+....+.+|++..+++|++.+.+.
T Consensus 132 ~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 132 NVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp EEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred EEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 8999974477898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.73 E-value=4.2e-07 Score=73.46 Aligned_cols=75 Identities=20% Similarity=0.381 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCEEEE--EEC
Q ss_conf 8890699999999986----0699889995788899999799999999977499379997249100112498999--959
Q 000481 1352 NWSAGQRQLFCLGRVL----LKRNRILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAHRVPTVIDSDMVMV--LSY 1425 (1467)
Q Consensus 1352 nLS~GQrQll~LARAL----Lr~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f~~~TvI~IAHRl~ti~~~DrIlV--ld~ 1425 (1467)
.+|.|||++..++..+ ..+++++++|||-+++++.....+.+.|++..++.-+|++||+...+..+|+++. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 8
Q 000481 1426 G 1426 (1467)
Q Consensus 1426 G 1426 (1467)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.48 E-value=1.1e-05 Score=61.02 Aligned_cols=76 Identities=22% Similarity=0.296 Sum_probs=62.0
Q ss_pred CCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEE--E
Q ss_conf 76691799999999987----15998999808777669999999999999782399689998269431310798999--9
Q 000481 718 LNLSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILV--L 791 (1467)
Q Consensus 718 ~~LSGGQkqRi~LARAl----y~~~~i~lLDdp~salD~~~~~~if~~~~~~~l~~kT~ilvTh~~~~l~~~d~i~~--l 791 (1467)
..+|+|||+...++... ...+.+++.|||-++||+...+.+.+ .+....++.-+|++||++.+++.+|+++. +
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~-~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHH-HHHHHCCCCEEEEEECCHHHHHHCCCEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999-99985548879999898899973242899999
Q ss_pred ECC
Q ss_conf 399
Q 000481 792 EGG 794 (1467)
Q Consensus 792 ~~G 794 (1467)
++|
T Consensus 297 ~~g 299 (308)
T d1e69a_ 297 VNG 299 (308)
T ss_dssp SSS
T ss_pred ECC
T ss_conf 699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.99 E-value=3.7e-05 Score=56.38 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCEEEEE
Q ss_conf 76691799999999987----159989998087776699999999999997823996899982694313107989999
Q 000481 718 LNLSGGQKQRIQLARAV----YNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSEVDRILVL 791 (1467)
Q Consensus 718 ~~LSGGQkqRi~LARAl----y~~~~i~lLDdp~salD~~~~~~if~~~~~~~l~~kT~ilvTh~~~~l~~~d~i~~l 791 (1467)
..||||||.+++||-.+ +.++++++||||.+++|+.....+.+.+....-++.-+|++||++..+..+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.017 Score=33.08 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=73.0
Q ss_pred CCEEEEEEEEEECC----CCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC--CCCCCCEEEECCEEEEECCC
Q ss_conf 84899967998389----9998732212588418809999678988957899998388--88887289983909998267
Q 000481 593 RSVKIQEGNFSWDP----ELAIPTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILGE--IPKISGTVNLYGSIAYVSQT 666 (1467)
Q Consensus 593 ~~i~~~~~~f~w~~----~~~~~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llGe--~~~~~G~i~~~g~iayv~Q~ 666 (1467)
..++++++.- |- ..+.++=.|++++ +.+....|.|||.|||||+++.+.=- |.. .|. .+...-+-++--
T Consensus 10 ~~l~i~~~rH--Plle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq-~G~-~VpA~~a~~~~~ 84 (234)
T d1wb9a2 10 PGIRITEGRH--PVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-IGS-YVPAQKVEIGPI 84 (234)
T ss_dssp SCEEEEEECC--TTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-TTC-CBSSSEEEECCC
T ss_pred CCEEEEEEEC--CEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHH-CCC-EEECCCEECCCC
T ss_conf 9689997378--7797446998264057988-9953999954673136899998799999987-297-674176661344
Q ss_pred CCCC-CCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 7679-887889970499999999999999943069883299999731367987669179999999998715998999808
Q 000481 667 SWIQ-SGSIRDNILYGKPMDKARYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDD 745 (1467)
Q Consensus 667 ~wi~-~~TireNIlfg~~~~~~~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly~~~~i~lLDd 745 (1467)
..|+ .....|++.-|.. -=..+-+|++-.----.+..++|+||
T Consensus 85 d~I~~~~~~~d~~~~~~S------------------------------------~F~~E~~~~~~il~~~~~~sLvliDE 128 (234)
T d1wb9a2 85 DRIFTRVGAADDLASGRS------------------------------------TFMVEMTETANILHNATEYSLVLMDE 128 (234)
T ss_dssp CEEEEEEC-----------------------------------------------CHHHHHHHHHHHHHCCTTEEEEEES
T ss_pred HHHEEEECCCCCCCCCHH------------------------------------HHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 202348746753436531------------------------------------89999999999997454660885322
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-CCC-CEEEEECCCCCH
Q ss_conf 777669999999999999782-399-689998269431
Q 000481 746 PFSAVDAHTAATLFNECVMAA-LEK-KTVILVTHQVEF 781 (1467)
Q Consensus 746 p~salD~~~~~~if~~~~~~~-l~~-kT~ilvTh~~~~ 781 (1467)
+.++=++..+..+....+..+ .++ ..++++||....
T Consensus 129 ~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 129 IGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp CCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 23587745666789876454320454428985246877
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.00 E-value=0.038 Score=30.04 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=19.4
Q ss_pred CCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 7322125884188099996789889578999983
Q 000481 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL 644 (1467)
Q Consensus 611 ~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ll 644 (1467)
|.|+++.--+.+|+++.|.|++|+|||+++.-++
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 6688874697898089999479997999999999
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.99 E-value=0.0017 Score=41.76 Aligned_cols=29 Identities=34% Similarity=0.732 Sum_probs=15.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 80999967898895789999838888887
Q 000481 623 AQKIAVCGSVGAGKSSLLYAILGEIPKIS 651 (1467)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~llGe~~~~~ 651 (1467)
|.-+.|+|++||||||+++++++++++..
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 78889994035662578999865301456
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.00042 Score=47.12 Aligned_cols=162 Identities=15% Similarity=0.045 Sum_probs=82.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCC------CCC
Q ss_conf 59999949999588999988414679863699979517999978885215786267754665567714999------999
Q 000481 1244 TRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPL------GLY 1317 (1467)
Q Consensus 1244 ekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~------~~~ 1317 (1467)
..|.|+|+.|+|||||+..+.+.+...++.+.+.+.+........+.....-+.|+...+.....++.... +..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYV 81 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 69999889997199999999999997799799998455012221146541234330246654300103444143223110
Q ss_pred -CHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf -9999999999838814773077876542346888889069999999998606998899957888999997999999999
Q 000481 1318 -SDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANASIDSATDAILQRIIR 1396 (1467)
Q Consensus 1318 -sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTs~lD~~Td~~Iq~~ir 1396 (1467)
..+++... ....+.........+.+..+.+.....+......+.+.+.++..++++++...+..-+... .+.+.++
T Consensus 82 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (189)
T d2i3ba1 82 VDLTSFEQL-ALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL--ALVEEIR 158 (189)
T ss_dssp ECHHHHHTT-TTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCC--TTHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHHHH
T ss_conf 037777778-8999999988762189706861433330535999999999854686599961555775569--9999986
Q ss_pred HHCCCCEEEEECC
Q ss_conf 7749937999724
Q 000481 1397 QEFSNCTVITVAH 1409 (1467)
Q Consensus 1397 ~~f~~~TvI~IAH 1409 (1467)
+ .++.+++.++.
T Consensus 159 ~-~~~~~~~~lt~ 170 (189)
T d2i3ba1 159 N-RKDVKVFNVTK 170 (189)
T ss_dssp T-TCCSEEEECCS
T ss_pred C-CCCCEEEEECH
T ss_conf 7-89974999786
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.74 E-value=0.053 Score=28.73 Aligned_cols=122 Identities=17% Similarity=0.237 Sum_probs=68.9
Q ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHH--------CCC-CCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHH
Q ss_conf 5884188099996789889578999983--------888-8887289983909998267767988788997049999999
Q 000481 617 NLDIKWAQKIAVCGSVGAGKSSLLYAIL--------GEI-PKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKA 687 (1467)
Q Consensus 617 ~l~i~~G~~~~ivG~~GsGKStLl~~ll--------Ge~-~~~~G~i~~~g~iayv~Q~~wi~~~TireNIlfg~~~~~~ 687 (1467)
++.+. ++++.|.|||.+||||+++.+. |-. +..+.++.....|-. .....|++.-|..
T Consensus 30 di~~~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~I~~--------~~~~~d~~~~~~S---- 96 (224)
T d1ewqa2 30 DLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYT--------RIGASDDLAGGKS---- 96 (224)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEE--------ECCC------CCS----
T ss_pred EEEEC-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCCEEEEECCEEEE--------EECCCCCCCCCCC----
T ss_conf 58847-8679997887345323455658999998525046137519940116999--------9877760237830----
Q ss_pred HHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99999999430698832999997313679876691799999999987159989998087776699999999999997823
Q 000481 688 RYDKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAAL 767 (1467)
Q Consensus 688 ~y~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~~~~~l 767 (1467)
.=..+-+|++-.---..+..++|+||+..+=|+..+..+...++..+.
T Consensus 97 --------------------------------tF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~ 144 (224)
T d1ewqa2 97 --------------------------------TFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALH 144 (224)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHH
T ss_conf --------------------------------789867889877502897727855454568623320025888888886
Q ss_pred -CCCEEEEECCCCCHHH
Q ss_conf -9968999826943131
Q 000481 768 -EKKTVILVTHQVEFLS 783 (1467)
Q Consensus 768 -~~kT~ilvTh~~~~l~ 783 (1467)
++.+.+++||..+...
T Consensus 145 ~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 145 ERRAYTLFATHYFELTA 161 (224)
T ss_dssp HHTCEEEEECCCHHHHT
T ss_pred HCCCCEEEEEECHHHHH
T ss_conf 23761378652023332
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.072 Score=27.57 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHC
Q ss_conf 69179999999998715998999808777669999999999999782399689998269431310
Q 000481 720 LSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEFLSE 784 (1467)
Q Consensus 720 LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~~~~~l~~kT~ilvTh~~~~l~~ 784 (1467)
-...++..+..+...|.++|+++++-..+.-+.....+.+...+.....++.+|+|-+..+..+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~ 127 (161)
T d2gj8a1 63 SDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGE 127 (161)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHH
T ss_conf 65202478999999987413320110256542034555444555420141010204654443355
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.57 E-value=0.035 Score=30.38 Aligned_cols=114 Identities=25% Similarity=0.266 Sum_probs=71.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 188099996789889578999983888888728-9983909998267767988788997049999999999999994306
Q 000481 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGT-VNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALD 699 (1467)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~-i~~~g~iayv~Q~~wi~~~TireNIlfg~~~~~~~y~~vi~~c~L~ 699 (1467)
.++-++.|+||+||||||.+.+++.+++..... +++...+-|.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~------------------------------------ 199 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD------------------------------------ 199 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC------------------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC------------------------------------
T ss_conf 41054898767877744779998666257874699962674345------------------------------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 98832999997313679876691799999999987159989998087776699999999999997823996899982694
Q 000481 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQV 779 (1467)
Q Consensus 700 ~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~~~~~if~~~~~~~l~~kT~ilvTh~~ 779 (1467)
+++--+++|.++ .|+.---+|..++-+||||++..|.- |..+++..+ .....|..|+-.-|.-
T Consensus 200 -----~~~~~q~~v~~~-----~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 200 -----IDGIGQTQVNPR-----VDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTN 262 (401)
T ss_dssp -----CSSSEEEECBGG-----GTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCS
T ss_pred -----CCCCCEEEECCC-----CCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCC
T ss_conf -----678870265587-----67799999999984138889845768---759999999----9972498589983367
Q ss_pred CHHHCCCE
Q ss_conf 31310798
Q 000481 780 EFLSEVDR 787 (1467)
Q Consensus 780 ~~l~~~d~ 787 (1467)
+-....++
T Consensus 263 ~a~~~~~R 270 (401)
T d1p9ra_ 263 TAVGAVTR 270 (401)
T ss_dssp SSHHHHHH
T ss_pred CHHHHHHH
T ss_conf 66766543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.39 E-value=0.021 Score=32.22 Aligned_cols=34 Identities=32% Similarity=0.302 Sum_probs=25.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8809999678988957899998388888872899
Q 000481 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1467)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~ 655 (1467)
+|+.++++|++|.|||||+++|+|+.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.36 E-value=0.12 Score=25.71 Aligned_cols=144 Identities=12% Similarity=0.049 Sum_probs=64.1
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC----CCCCCEEEECCEEEEECCCCCCCCCCHHHHHH-CCCCCCHHHHHHHHH
Q ss_conf 4188099996789889578999983888----88872899839099982677679887889970-499999999999999
Q 000481 620 IKWAQKIAVCGSVGAGKSSLLYAILGEI----PKISGTVNLYGSIAYVSQTSWIQSGSIRDNIL-YGKPMDKARYDKAIK 694 (1467)
Q Consensus 620 i~~G~~~~ivG~~GsGKStLl~~llGe~----~~~~G~i~~~g~iayv~Q~~wi~~~TireNIl-fg~~~~~~~y~~vi~ 694 (1467)
+.+|+++.|.|+.|+|||+|+..+.-.+ +...+...-.+++.|+.-+.. ...+++.+. .+..++...+.....
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~--~~~~~~Rl~~~~~~~~~~~~~~~~~ 103 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP--PTAIHHRLHALGAHLSAEERQAVAD 103 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC--HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCH--HHHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 55895899992899989999999999997699721112357873689851234--9999999999862368666531233
Q ss_pred HHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-----CHHHHHHHHHHHHHHH-CC
Q ss_conf 94306988329999973136798766917999999999871599899980877766-----9999999999999782-39
Q 000481 695 ACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAV-----DAHTAATLFNECVMAA-LE 768 (1467)
Q Consensus 695 ~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~sal-----D~~~~~~if~~~~~~~-l~ 768 (1467)
.+...+.-+. ..... -....-.+. ....+++++++|--.... |......+++.+.... ..
T Consensus 104 ------~~~~~~~~~~-----~~~~~--~~~~~~~~~-~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~ 169 (274)
T d1nlfa_ 104 ------GLLIQPLIGS-----LPNIM--APEWFDGLK-RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 169 (274)
T ss_dssp ------HEEECCCTTS-----CCCTT--SHHHHHHHH-HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------CCEECCCCCC-----CCHHH--HHHHHHHHH-HHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf ------3232145674-----20357--899999988-752676589628135422665232256899998877776447
Q ss_pred CCEEEEECCCC
Q ss_conf 96899982694
Q 000481 769 KKTVILVTHQV 779 (1467)
Q Consensus 769 ~kT~ilvTh~~ 779 (1467)
+.|++++.|.-
T Consensus 170 ~~~vi~v~H~~ 180 (274)
T d1nlfa_ 170 GCSIVFLHHAS 180 (274)
T ss_dssp CCEEEEEEEC-
T ss_pred CCCEEHHHHCC
T ss_conf 97540131005
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.23 E-value=0.095 Score=26.52 Aligned_cols=155 Identities=12% Similarity=0.084 Sum_probs=73.3
Q ss_pred CCCCEEEE--ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHH
Q ss_conf 32212588--4188099996789889578999983888888728998390999826776798878899704999999999
Q 000481 612 TLRGVNLD--IKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARY 689 (1467)
Q Consensus 612 ~L~~i~l~--i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g~iayv~Q~~wi~~~TireNIlfg~~~~~~~y 689 (1467)
.|+.+ +. +++|+++.|.|+.|||||+|+.-++-...... ..+.|++-+-- .....+..-.+|. +.+.+
T Consensus 14 ~LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~------~~~~~is~e~~-~~~~~~~~~~~~~--~~~~~ 83 (242)
T d1tf7a2 14 RLDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVENACANK------ERAILFAYEES-RAQLLRNAYSWGM--DFEEM 83 (242)
T ss_dssp HHHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTT------CCEEEEESSSC-HHHHHHHHHTTSC--CHHHH
T ss_pred HHHHH-HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC------CCCCEEECCCC-HHHHHHHHHHCCC--CHHHH
T ss_conf 79884-568986984999991899999999999999998723------24411212679-9999999998299--86998
Q ss_pred HHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCC---CHHHHHHHHHHHHHH
Q ss_conf 9999994306988329999973136798766917999999999871-599899980877766---999999999999978
Q 000481 690 DKAIKACALDKDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVY-NDADIYLFDDPFSAV---DAHTAATLFNECVMA 765 (1467)
Q Consensus 690 ~~vi~~c~L~~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly-~~~~i~lLDdp~sal---D~~~~~~if~~~~~~ 765 (1467)
. ..|....+........ .+...-.+.+++. .++++++.|...... +..............
T Consensus 84 ~---------------~~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~ 147 (242)
T d1tf7a2 84 E---------------RQNLLKIVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGY 147 (242)
T ss_dssp H---------------HTTSEEECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHH
T ss_pred H---------------HCCCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 5---------------4586179973000101-79999999999984088533220431430489999999999999999
Q ss_pred H-CCCCEEEEECCCCC----------HHH-CCCEEEEEE
Q ss_conf 2-39968999826943----------131-079899993
Q 000481 766 A-LEKKTVILVTHQVE----------FLS-EVDRILVLE 792 (1467)
Q Consensus 766 ~-l~~kT~ilvTh~~~----------~l~-~~d~i~~l~ 792 (1467)
. ..+.|++++.|... -+. .+|.|+.++
T Consensus 148 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 148 AKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 998698399998567512554457764046421699999
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.17 E-value=0.026 Score=31.40 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99996789889578999983888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
.++|+|.+|+|||||+++++|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.87 E-value=0.029 Score=31.01 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=29.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89599999499995889999884146798636999
Q 000481 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276 (1467)
Q Consensus 1242 ~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~I 1276 (1467)
+|++..++|.||.|||||+++|.+-.....|.|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC
T ss_conf 69808997889877888877305355501068420
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.69 E-value=0.022 Score=32.07 Aligned_cols=28 Identities=36% Similarity=0.552 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999678988957899998388888872
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEIPKISG 652 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~~~~~G 652 (1467)
-++|+|++|+|||||+++|+|.-....|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7999899999789999999588867775
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.20 E-value=0.03 Score=30.87 Aligned_cols=23 Identities=48% Similarity=0.645 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99996789889578999983888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
.++++|++|+|||||+++|+|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=93.20 E-value=0.14 Score=25.14 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994999958899998841
Q 000481 1245 RVGVVGRTGSGKTTLISALFR 1265 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~r 1265 (1467)
-|.|+|++||||||+++.|.+
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999999999999999
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.12 E-value=0.029 Score=31.05 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99996789889578999983888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
.++|+|++|+|||||+++|.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.68 E-value=0.21 Score=23.56 Aligned_cols=176 Identities=12% Similarity=0.095 Sum_probs=79.4
Q ss_pred CEECEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEECCCCCHHHHHHCC-EEECCCCCCCCCCHHH
Q ss_conf 2000038961895999994999958899998841-4679863699979517999978885215-7862677546655677
Q 000481 1232 VLKGITCTFSEGTRVGVVGRTGSGKTTLISALFR-LVEPAGGSILIDGVDICSMGLKDLRVKL-SIIPQEPTLFRGSVRT 1309 (1467)
Q Consensus 1232 vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~r-l~~~~~G~I~IDG~dI~~i~l~~LR~~i-siIpQdp~LF~gTIR~ 1309 (1467)
-|+.+.--+.+||.+-|.|++|+||||++.-+.. +..-..-.+.+-.. +.+.+.+..++ +...+-+.--..+.+.
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~---E~~~~~~~~r~~~~~~~~~~~~~~~~~~ 100 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML---EESVEETAEDLIGLHNRVRLRQSDSLKR 100 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES---SSCHHHHHHHHHHHHTTCCGGGCHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE---CCCHHHHHHHHHHHHHCCCCHHHCCCCC
T ss_conf 6888746978980899994799979999999997265533663457640---1111357769999864587101012222
Q ss_pred HCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCC-----C
Q ss_conf 1499999999999999998388147730778765423468888890699999999986--06998899957888-----9
Q 000481 1310 NLDPLGLYSDDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVL--LKRNRILVLDEANA-----S 1382 (1467)
Q Consensus 1310 NLdp~~~~sd~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARAL--Lr~~~ILiLDEaTs-----~ 1382 (1467)
+ .++...+.++...+...-...+-+........ .++...+.. -.+++++++|=.+. +
T Consensus 101 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~ 164 (277)
T d1cr2a_ 101 E--------------IIENGKFDQWFDELFGNDTFHLYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHISIVVSASG 164 (277)
T ss_dssp H--------------HHHTSHHHHHHHHHHSSSCEEEECCC-CCCHH--HHHHHHHHHHHTTCCSEEEEEEEEC------
T ss_pred C--------------HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH--HHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf 2--------------14567788898874035214662143310689--9999865432136762599705421203465
Q ss_pred CCHH--HHHHHHHHHHHHC--CCCEEEEECCCC----------------HHH-------CCCCEEEEEECC
Q ss_conf 9999--7999999999774--993799972491----------------001-------124989999598
Q 000481 1383 IDSA--TDAILQRIIRQEF--SNCTVITVAHRV----------------PTV-------IDSDMVMVLSYG 1426 (1467)
Q Consensus 1383 lD~~--Td~~Iq~~ir~~f--~~~TvI~IAHRl----------------~ti-------~~~DrIlVld~G 1426 (1467)
-+.. ....+.+.+++.. .+|+|++++|=- +.+ ..+|-|+.+..-
T Consensus 165 ~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r~ 235 (277)
T d1cr2a_ 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (277)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEEC
T ss_conf 44306778999999999765016552031035632244455433332112123430015038699999846
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.27 E-value=0.07 Score=27.67 Aligned_cols=147 Identities=17% Similarity=0.157 Sum_probs=69.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 618959999949999588999988414679863-6999795179999788852157862677546655677149999999
Q 000481 1240 FSEGTRVGVVGRTGSGKTTLISALFRLVEPAGG-SILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYS 1318 (1467)
Q Consensus 1240 I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G-~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~~~s 1318 (1467)
+++|.-+-|.|++|+|||++..-+..-.--..+ .++++- +.+...+++ +...++ ++
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~----e~~~~~~~~------------------~~~~~~-~~ 79 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY----EESRAQLLR------------------NAYSWG-MD 79 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES----SSCHHHHHH------------------HHHTTS-CC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEC----CCCHHHHHH------------------HHHHCC-CC
T ss_conf 8698499999189999999999999999872324411212----679999999------------------999829-98
Q ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999983881477307787654234688888906999999999860-69988999578889999979999999997
Q 000481 1319 DDEIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLL-KRNRILVLDEANASIDSATDAILQRIIRQ 1397 (1467)
Q Consensus 1319 d~ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARALL-r~~~ILiLDEaTs~lD~~Td~~Iq~~ir~ 1397 (1467)
.+++. ..+... .+........ .+..+-.+.+++- .+++++++|-.++.....++..+.+.++.
T Consensus 80 ~~~~~----~~~~~~-----------~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~ 143 (242)
T d1tf7a2 80 FEEME----RQNLLK-----------IVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIG 143 (242)
T ss_dssp HHHHH----HTTSEE-----------ECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHH
T ss_pred HHHHH----HCCCEE-----------EEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHH
T ss_conf 69985----458617-----------9973000101-7999999999998408853322043143048999999999999
Q ss_pred ---H--CCCCEEEEECCCCHH----------H-CCCCEEEEEEC
Q ss_conf ---7--499379997249100----------1-12498999959
Q 000481 1398 ---E--FSNCTVITVAHRVPT----------V-IDSDMVMVLSY 1425 (1467)
Q Consensus 1398 ---~--f~~~TvI~IAHRl~t----------i-~~~DrIlVld~ 1425 (1467)
. ..++|++++.|.-.. + ..+|-|+.|+.
T Consensus 144 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 144 VTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 99999986983999985675125544577640464216999998
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=92.11 E-value=0.052 Score=28.81 Aligned_cols=40 Identities=35% Similarity=0.439 Sum_probs=32.5
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 3896189599999499995889999884146798636999
Q 000481 1237 TCTFSEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILI 1276 (1467)
Q Consensus 1237 sl~I~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~I 1276 (1467)
..-++.+..+-|+|+|||||||++++|++.+++..=-|+|
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9999837888999403566257899986530145623311
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.10 E-value=0.045 Score=29.36 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 880999967898895789999838888
Q 000481 622 WAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
.|++++++|+.||||||+.+.|..++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.94 E-value=0.037 Score=30.15 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=17.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 809999678988957899998388888
Q 000481 623 AQKIAVCGSVGAGKSSLLYAILGEIPK 649 (1467)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~llGe~~~ 649 (1467)
|.+++++||+||||||+.+.|..+.+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=91.90 E-value=0.04 Score=29.81 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=14.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999967898895789999838888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
.++|+|+.|||||||++.|+.++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=91.89 E-value=0.018 Score=32.85 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8809999678988957899998388888872899
Q 000481 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVN 655 (1467)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~ 655 (1467)
+|+.++++|++|.|||||+++|+|+.....|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.66 E-value=0.08 Score=27.17 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=22.4
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 84188099996789889578999983888
Q 000481 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
.-++|.++-++|.+||||||+.+.|.-.+
T Consensus 20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 20 RNQRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 58998699998999999899999999887
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.65 E-value=0.057 Score=28.45 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99996789889578999983888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
-++++|++|+|||||+++|.|+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=91.64 E-value=0.099 Score=26.36 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099996789889578999983888
Q 000481 624 QKIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
+++.++|++||||||+.+.|..+.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 799998999999999999999957
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=91.45 E-value=0.28 Score=22.48 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=25.1
Q ss_pred CCCEECEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 962000038961895999994999958899998841
Q 000481 1230 PLVLKGITCTFSEGTRVGVVGRTGSGKTTLISALFR 1265 (1467)
Q Consensus 1230 ~~vLk~isl~I~~GekvgIVGrTGSGKSTL~~~L~r 1265 (1467)
+.++.| +.||+.+-|+|++|+||||++..|.-
T Consensus 20 d~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 20 DYVLPN----MVAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp CEEETT----EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHCC----CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 898689----55895899992899989999999999
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=91.22 E-value=0.076 Score=27.37 Aligned_cols=24 Identities=38% Similarity=0.643 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 959999949999588999988414
Q 000481 1243 GTRVGVVGRTGSGKTTLISALFRL 1266 (1467)
Q Consensus 1243 GekvgIVGrTGSGKSTL~~~L~rl 1266 (1467)
|=||+++|++|+|||||++.|.+-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.14 E-value=0.057 Score=28.51 Aligned_cols=40 Identities=28% Similarity=0.327 Sum_probs=28.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 8809999678988957899998388888872899839099982677
Q 000481 622 WAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1467)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g~iayv~Q~~ 667 (1467)
+.-.++|+|+.|+|||||+..+...+... | .++|.+.=+|
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~-g-----~~vavlavDp 92 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIRE-G-----LKVAVIAVDP 92 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHT-T-----CCEEEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC-C-----CCEEEECCCC
T ss_conf 83289743899998999999999999756-9-----8332203777
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=91.10 E-value=0.052 Score=28.80 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999678988957899998388
Q 000481 626 IAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 626 ~~ivG~~GsGKStLl~~llGe 646 (1467)
++|+|+.++|||||+++|.|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.99 E-value=0.13 Score=25.28 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=23.5
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 841880999967898895789999838
Q 000481 619 DIKWAQKIAVCGSVGAGKSSLLYAILG 645 (1467)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~llG 645 (1467)
-+++|+++.|.|+.|||||+|..-++-
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 955887999985898988999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.97 E-value=0.051 Score=28.90 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 959999949999588999988414679
Q 000481 1243 GTRVGVVGRTGSGKTTLISALFRLVEP 1269 (1467)
Q Consensus 1243 GekvgIVGrTGSGKSTL~~~L~rl~~~ 1269 (1467)
|..|.|+||+|||||||.+.|..-++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.92 E-value=0.31 Score=22.09 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9996789889578999983888
Q 000481 626 IAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 626 ~~ivG~~GsGKStLl~~llGe~ 647 (1467)
+.+.||.|+||||+.++++-++
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.86 E-value=0.073 Score=27.53 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99996789889578999983888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
+++|.|++|||||||.+.|.-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978988789999999999983
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.86 E-value=0.097 Score=26.45 Aligned_cols=28 Identities=39% Similarity=0.447 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8809999678988957899998388888
Q 000481 622 WAQKIAVCGSVGAGKSSLLYAILGEIPK 649 (1467)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~llGe~~~ 649 (1467)
+|.+++|+||+|+||+||.+.|+-+.+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~ 28 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPL 28 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9809999999999999999999863986
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.81 E-value=0.073 Score=27.56 Aligned_cols=23 Identities=39% Similarity=0.375 Sum_probs=11.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99994999958899998841467
Q 000481 1246 VGVVGRTGSGKTTLISALFRLVE 1268 (1467)
Q Consensus 1246 vgIVGrTGSGKSTL~~~L~rl~~ 1268 (1467)
+||+|++|||||||+..|.+.+.
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99980999989999999999998
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.68 E-value=0.085 Score=26.98 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=29.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCC
Q ss_conf 99996789889578999983888888728998390999826776798
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS 671 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g~iayv~Q~~wi~~ 671 (1467)
+++|.|++||||||+.+.|.-.+...... ...-.+..++++.|...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~-~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD-YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSC-GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCC-CCCCCEEEEECCCCCCC
T ss_conf 99998999787999999999996410134-57884399934653224
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.68 E-value=0.032 Score=30.67 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=36.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCC
Q ss_conf 8959999949999588999988414679863699979517999978885215786267
Q 000481 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQE 1299 (1467)
Q Consensus 1242 ~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~isiIpQd 1299 (1467)
+|.+..++|.||.|||||+++|.+-.....|.|.-.. .-|.|+-|.+--+-+..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~----~rGrHTTt~~~l~~~~g 149 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHL----GRGKHTTRHVELIHTSG 149 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------------------CCCCCEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCCC----CCCCEEEEEEEEEECCC
T ss_conf 3564999877873487898751517676403555335----89712443478886279
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=90.67 E-value=0.098 Score=26.42 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999967898895789999838888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
.++++|+.|+|||||++.|.|.-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.65 E-value=0.093 Score=26.60 Aligned_cols=22 Identities=45% Similarity=0.699 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999678988957899998388
Q 000481 625 KIAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe 646 (1467)
.++++|.+|+|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=90.63 E-value=0.096 Score=26.48 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99996789889578999983888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
.++++|.+|+|||||++.+.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=90.47 E-value=0.053 Score=28.75 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=11.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999588999988414
Q 000481 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~rl 1266 (1467)
+|+|+|++++|||||+++|.+-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999889999899999998589
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=90.16 E-value=0.21 Score=23.43 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=30.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCC
Q ss_conf 99996789889578999983888888728998390999826776798
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQS 671 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g~iayv~Q~~wi~~ 671 (1467)
+++|.|++||||||+.+.|...+....+ .-++..++++.+...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~----~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE----HRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT----CCCEEEEEGGGGBCC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEEEEEEECC
T ss_conf 9999689999876899999999730468----996599952156898
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=90.10 E-value=0.063 Score=28.10 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9996789889578999983888
Q 000481 626 IAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 626 ~~ivG~~GsGKStLl~~llGe~ 647 (1467)
++++|..++|||||+++|.|+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=89.95 E-value=0.34 Score=21.72 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=21.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 188099996789889578999983888
Q 000481 621 KWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
..+.++.++|+.||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=89.82 E-value=0.079 Score=27.25 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999588999988414
Q 000481 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~rl 1266 (1467)
+|+|||++|+|||||+++|.+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=89.80 E-value=0.15 Score=24.71 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8959999949999588999988414679863699979
Q 000481 1242 EGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1467)
Q Consensus 1242 ~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG 1278 (1467)
.|+.|.|+|++||||||+.+.|.+-... --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=89.77 E-value=0.15 Score=24.74 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=26.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 189599999499995889999884146798636
Q 000481 1241 SEGTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273 (1467)
Q Consensus 1241 ~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~ 1273 (1467)
.++--|-+.|+|||||||.+.++++.......+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.76 E-value=0.11 Score=26.15 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=16.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099996789889578999983888
Q 000481 624 QKIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
..++|+|+.|||||||.++|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.75 E-value=0.37 Score=21.34 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=20.1
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 418809999678988957899998388
Q 000481 620 IKWAQKIAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 620 i~~G~~~~ivG~~GsGKStLl~~llGe 646 (1467)
-++-+++.++|..||||||+.+.++-.
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999989999899999899999999976
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=89.59 E-value=0.13 Score=25.46 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=20.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 188099996789889578999983888
Q 000481 621 KWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
++|.++.++|..||||||+.++|.-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=89.39 E-value=0.15 Score=24.68 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=22.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 188099996789889578999983888
Q 000481 621 KWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
|+|-.++|.|+.||||||+.+.|.-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=89.35 E-value=0.1 Score=26.20 Aligned_cols=107 Identities=18% Similarity=0.237 Sum_probs=54.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHH--HC-CCCC---CCC
Q ss_conf 99999499995889999884146798636999795179999788852157862677546655677--14-9999---999
Q 000481 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRT--NL-DPLG---LYS 1318 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~--NL-dp~~---~~s 1318 (1467)
.|||.|.+||||||+.+.|..+..-..+ ..++.+|++|.+..+...++ ++ ..++ .++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~D 144 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLKERGLMKKKGFPESYD 144 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHHHHCCCCCCCCHHHHH
T ss_conf 9999689999876899999999730468-----------------99659995215689845888836876688167631
Q ss_pred HHHHHHHHHHCCCC-HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 99999999983881-4773077876542346888889069999999998606998899957888
Q 000481 1319 DDEIWKALEKCQLK-TTISSLPNKLDSSVSDEGENWSAGQRQLFCLGRVLLKRNRILVLDEANA 1381 (1467)
Q Consensus 1319 d~ei~~aL~~~~L~-~~v~~lp~gLdt~v~e~G~nLS~GQrQll~LARALLr~~~ILiLDEaTs 1381 (1467)
-+.+.+.+....-. ..+ ..| .+|....+. .. ++ .....+++|+|++---.
T Consensus 145 ~~~L~~~L~~lk~g~~~v-~~P-~yd~~~~d~---~~-~~-------~~~~~~~dIlIvEGi~v 195 (308)
T d1sq5a_ 145 MHRLVKFVSDLKSGVPNV-TAP-VYSHLIYDV---IP-DG-------DKTVVQPDILILEGLNV 195 (308)
T ss_dssp HHHHHHHHHHHTTTCSCE-EEC-CEETTTTEE---CT-TC-------CEEEC-CCEEEEECTTT
T ss_pred HHHHHHHHHHHHCCCCCC-EEE-CCCHHHCCC---CC-CC-------CEEECCCCEEEECCHHH
T ss_conf 999999999997599864-210-530010255---77-87-------36827999899704021
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=89.13 E-value=0.14 Score=24.94 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999678988957899998388
Q 000481 626 IAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 626 ~~ivG~~GsGKStLl~~llGe 646 (1467)
++|+|.+.+|||||+++|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=88.97 E-value=0.078 Score=27.30 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=23.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 999994999958899998841467986369
Q 000481 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSI 1274 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~rl~~~~~G~I 1274 (1467)
.++|+|.+|||||||++.|.+-+...+-++
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v 33 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRP 33 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 899991899989999999999999779768
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.88 E-value=0.049 Score=29.03 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=25.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 0999967898895789999838888887289
Q 000481 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTV 654 (1467)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~llGe~~~~~G~i 654 (1467)
..+.|+|++|+|||||++.+..++....+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 6999988999719999999999999779979
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.84 E-value=0.11 Score=25.85 Aligned_cols=28 Identities=29% Similarity=0.300 Sum_probs=23.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1880999967898895789999838888
Q 000481 621 KWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
++.-.++++|+.|+|||||++.+.|...
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7777899999999898999999967887
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.78 E-value=0.14 Score=25.20 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 895999994999958899998841467
Q 000481 1242 EGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1467)
Q Consensus 1242 ~GekvgIVGrTGSGKSTL~~~L~rl~~ 1268 (1467)
.|.-+.|+||||+||+||.+.|+.-.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.67 E-value=0.19 Score=23.85 Aligned_cols=45 Identities=11% Similarity=0.219 Sum_probs=22.0
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 98715998999808777669999999999999782399689998269431
Q 000481 732 RAVYNDADIYLFDDPFSAVDAHTAATLFNECVMAALEKKTVILVTHQVEF 781 (1467)
Q Consensus 732 RAly~~~~i~lLDdp~salD~~~~~~if~~~~~~~l~~kT~ilvTh~~~~ 781 (1467)
+-...+.|++++|-.- ... +....+.+.+. ..+|-+++|-+..+.
T Consensus 130 ~~~~~~~d~~l~~~~~-~~~-~~d~~l~~~l~---~~~k~~~~V~nK~D~ 174 (400)
T d1tq4a_ 130 KMKFYEYDFFIIISAT-RFK-KNDIDIAKAIS---MMKKEFYFVRTKVDS 174 (400)
T ss_dssp HTTGGGCSEEEEEESS-CCC-HHHHHHHHHHH---HTTCEEEEEECCHHH
T ss_pred HHHHHCCEEEEEECCC-CCC-HHHHHHHHHHH---HCCCCEEEEEECCCC
T ss_conf 7433226599996588-887-88999999999---769987999708632
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=88.05 E-value=0.22 Score=23.27 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80999967898895789999838888
Q 000481 623 AQKIAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
..++.+.|++||||||+.++|..++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=88.04 E-value=0.23 Score=23.09 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99996789889578999983888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
.++|+|+.|||||||++.|+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.89 E-value=0.19 Score=23.92 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99996789889578999983888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
.++++|+.|+|||||++.|.|+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=87.87 E-value=0.19 Score=23.90 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99996789889578999983888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
.++++|..|+|||||++.+.+.-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.85 E-value=0.18 Score=24.02 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80999967898895789999838888
Q 000481 623 AQKIAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
..+++|.|+.||||||+.+.|.-.+.
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899989999898999999999998
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.83 E-value=0.48 Score=20.34 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999678988957899998388
Q 000481 625 KIAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe 646 (1467)
.++++|..|+|||||++.+++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=87.82 E-value=0.18 Score=24.13 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999588999988414
Q 000481 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~rl 1266 (1467)
+|.++|+||+|||||+++|++-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999899998699999998589
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.15 E-value=0.12 Score=25.77 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 099996789889578999983888888
Q 000481 624 QKIAVCGSVGAGKSSLLYAILGEIPKI 650 (1467)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~llGe~~~~ 650 (1467)
..++|+|..|||||||+..|+.++...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 099998099998999999999999867
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=87.11 E-value=0.22 Score=23.29 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189599999499995889999884146
Q 000481 1241 SEGTRVGVVGRTGSGKTTLISALFRLV 1267 (1467)
Q Consensus 1241 ~~GekvgIVGrTGSGKSTL~~~L~rl~ 1267 (1467)
+.+..+.|+|++||||||+.+.|.+-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.08 E-value=0.23 Score=23.25 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99996789889578999983888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
.++++|+.|+|||||++.+.+.-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=87.05 E-value=0.24 Score=23.04 Aligned_cols=24 Identities=50% Similarity=0.591 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999994999958899998841467
Q 000481 1245 RVGVVGRTGSGKTTLISALFRLVE 1268 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~rl~~ 1268 (1467)
.|+|+|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.01 E-value=0.42 Score=20.92 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99967898895789999838888
Q 000481 626 IAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 626 ~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
..+.||.|+||||+++++..++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=86.96 E-value=0.23 Score=23.16 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999678988957899998388
Q 000481 625 KIAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe 646 (1467)
.++++|+.|+|||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=86.96 E-value=0.27 Score=22.51 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1895999994999958899998841467
Q 000481 1241 SEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1467)
Q Consensus 1241 ~~GekvgIVGrTGSGKSTL~~~L~rl~~ 1268 (1467)
+.|-.|.++|.+||||||+.++|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.96 E-value=0.2 Score=23.75 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999967898895789999838888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
.+.+.||.|+||||++++++.++.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 699978999748799999999987
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.56 E-value=0.059 Score=28.36 Aligned_cols=21 Identities=38% Similarity=0.657 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999678988957899998388
Q 000481 626 IAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 626 ~~ivG~~GsGKStLl~~llGe 646 (1467)
++++|..|+|||||+++|.|+
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=86.48 E-value=0.3 Score=22.14 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=24.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1895999994999958899998841467
Q 000481 1241 SEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1467)
Q Consensus 1241 ~~GekvgIVGrTGSGKSTL~~~L~rl~~ 1268 (1467)
++|-+|.|.|+.||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.28 E-value=0.3 Score=22.15 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=10.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999994999958899998841
Q 000481 1245 RVGVVGRTGSGKTTLISALFR 1265 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~r 1265 (1467)
-|.|+||||+||+||.+.|.+
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 199999899999999999997
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.16 E-value=0.24 Score=23.03 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999949999588999988414679
Q 000481 1245 RVGVVGRTGSGKTTLISALFRLVEP 1269 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~rl~~~ 1269 (1467)
.|||.|++|||||||++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=86.09 E-value=0.32 Score=21.88 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999588999988414
Q 000481 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~rl 1266 (1467)
+|+++|++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=86.02 E-value=0.23 Score=23.25 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=15.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999678988957899998388
Q 000481 625 KIAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe 646 (1467)
.++|+|+.||||||+.+.|.-.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 7989899999989999999999
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=86.01 E-value=0.3 Score=22.11 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999588999988414
Q 000481 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~rl 1266 (1467)
+|+++|++|+|||||++.|.+-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=85.99 E-value=0.36 Score=21.52 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=16.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18809999678988957899998388
Q 000481 621 KWAQKIAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~llGe 646 (1467)
|+|-.++++|+.||||||..+.|.-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=85.96 E-value=0.59 Score=19.57 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999967898895789999838888
Q 000481 624 QKIAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
.-+.+.||.|+|||++.+++..++.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 0799889699988999999862010
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=85.86 E-value=0.26 Score=22.69 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999967898895789999838888
Q 000481 624 QKIAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
.++.|+|+.||||||+.+.|...+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=85.84 E-value=0.5 Score=20.23 Aligned_cols=34 Identities=24% Similarity=0.507 Sum_probs=23.0
Q ss_pred CCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 73221258841880999967898895789999838
Q 000481 611 PTLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAILG 645 (1467)
Q Consensus 611 ~~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~llG 645 (1467)
..++..-+.+ .|.-+.+.|++|+||||+...++.
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.76 E-value=0.27 Score=22.60 Aligned_cols=23 Identities=43% Similarity=0.801 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99967898895789999838888
Q 000481 626 IAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 626 ~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
++|+||+||||+||.+.|+.+.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.52 E-value=0.28 Score=22.44 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999967898895789999838888
Q 000481 624 QKIAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
.+++++|..||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.32 E-value=0.63 Score=19.33 Aligned_cols=46 Identities=7% Similarity=0.041 Sum_probs=29.4
Q ss_pred CCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHC--CCCEEEEECCCCHH
Q ss_conf 06998899957888999997-999999999774--99379997249100
Q 000481 1368 LKRNRILVLDEANASIDSAT-DAILQRIIRQEF--SNCTVITVAHRVPT 1413 (1467)
Q Consensus 1368 Lr~~~ILiLDEaTs~lD~~T-d~~Iq~~ir~~f--~~~TvI~IAHRl~t 1413 (1467)
..+..++++||.-.+-|++- .+.....+.... .++.+++.+|...-
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 5466088532223587745666789876454320454428985246877
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.07 E-value=0.34 Score=21.64 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=29.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCC
Q ss_conf 9999949999588999988414679863699979517999978885215786267754
Q 000481 1245 RVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTL 1302 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~L 1302 (1467)
.|||.|++||||||+.+.|...+..... . .-...+.+++||.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~--~------------~~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV--D------------YRQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS--C------------GGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCC--C------------CCCCCEEEEECCCCC
T ss_conf 9999899978799999999999641013--4------------578843999346532
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=84.94 E-value=0.3 Score=22.19 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999588999988414
Q 000481 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~rl 1266 (1467)
.|+|||++|+|||||+++|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.77 E-value=0.53 Score=20.00 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=31.9
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 8418809999678988957899998388888872899839099982677
Q 000481 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1467)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g~iayv~Q~~ 667 (1467)
-+++|+++.|.|+.|||||+|..-++-........-...+.+.|+..+.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~ 78 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 78 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 9869969999838999889999999998631243126896399994023
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.70 E-value=0.24 Score=22.96 Aligned_cols=41 Identities=29% Similarity=0.298 Sum_probs=26.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCC
Q ss_conf 99996789889578999983888888728998390999826776
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSW 668 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g~iayv~Q~~w 668 (1467)
+++|.|+.|||||||...|.-.+....| ..-.++.++.+.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~---~~~~v~~iS~Ddf 69 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYG---GEKSIGYASIDDF 69 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHG---GGSCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHC---CCCCEEEECCCCC
T ss_conf 9983799878899999999999998727---7860676356777
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.42 E-value=0.45 Score=20.61 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999678988957899998388
Q 000481 625 KIAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe 646 (1467)
-++++|.+++|||||+.+|++.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=84.42 E-value=0.018 Score=32.83 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=26.9
Q ss_pred CCCCEEEEECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 322125884188099996789889578999983
Q 000481 612 TLRGVNLDIKWAQKIAVCGSVGAGKSSLLYAIL 644 (1467)
Q Consensus 612 ~L~~i~l~i~~G~~~~ivG~~GsGKStLl~~ll 644 (1467)
..++..+++.+| +++|+|+|||||||++.||.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 870279974998-08998899998799999999
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=84.41 E-value=0.69 Score=19.02 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999967898895789999838888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
-+.+.||.|+|||++.+++..++.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.38 E-value=0.19 Score=23.98 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88099996789889578999983888
Q 000481 622 WAQKIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
+|..+.++|..||||||+.+.|.-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.35 E-value=0.3 Score=22.18 Aligned_cols=26 Identities=15% Similarity=0.469 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 80999967898895789999838888
Q 000481 623 AQKIAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
..+++++||+|+||+||.+.|+.+.+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=84.33 E-value=0.32 Score=21.89 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 95999994999958899998841467
Q 000481 1243 GTRVGVVGRTGSGKTTLISALFRLVE 1268 (1467)
Q Consensus 1243 GekvgIVGrTGSGKSTL~~~L~rl~~ 1268 (1467)
...|.|.|++||||||+++.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.33 E-value=0.47 Score=20.44 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=25.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 841880999967898895789999838888
Q 000481 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
-+++|+++.|.|+.|||||+|+.-++....
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 985997999995899999999999999998
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=84.27 E-value=0.69 Score=18.97 Aligned_cols=40 Identities=33% Similarity=0.634 Sum_probs=28.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECCEECC
Q ss_conf 9599999499995889999884146------------798636999795179
Q 000481 1243 GTRVGVVGRTGSGKTTLISALFRLV------------EPAGGSILIDGVDIC 1282 (1467)
Q Consensus 1243 GekvgIVGrTGSGKSTL~~~L~rl~------------~~~~G~I~IDG~dI~ 1282 (1467)
+=||||+|++|+|||||+++|++-- ....|.+.++|.++.
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 59 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYV 59 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCEEE
T ss_conf 8889999999999999999997787622422565433320012204992346
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.20 E-value=0.37 Score=21.41 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99967898895789999838888
Q 000481 626 IAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 626 ~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
++|+||+||||+||.+.|+-+.+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=84.19 E-value=0.29 Score=22.28 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599999499995889999884146
Q 000481 1244 TRVGVVGRTGSGKTTLISALFRLV 1267 (1467)
Q Consensus 1244 ekvgIVGrTGSGKSTL~~~L~rl~ 1267 (1467)
.+|+|.|++|+|||||++.|..-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.11 E-value=0.57 Score=19.74 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=25.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 96189599999499995889999884146
Q 000481 1239 TFSEGTRVGVVGRTGSGKTTLISALFRLV 1267 (1467)
Q Consensus 1239 ~I~~GekvgIVGrTGSGKSTL~~~L~rl~ 1267 (1467)
-+++|+.+-|.|++|+|||++..-+..-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=84.00 E-value=0.41 Score=20.98 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499995889999884146
Q 000481 1245 RVGVVGRTGSGKTTLISALFRLV 1267 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~rl~ 1267 (1467)
.|||+|++.||||||+++|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=83.95 E-value=0.31 Score=22.05 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=25.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 59999949999588999988414679863699979
Q 000481 1244 TRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1467)
Q Consensus 1244 ekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG 1278 (1467)
..|.|+|++||||||+++.|.+-+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=83.67 E-value=0.43 Score=20.83 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999967898895789999838888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
.++++|+.|+|||||++.+.|+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=83.59 E-value=0.4 Score=21.02 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=17.6
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 099996789889578999983
Q 000481 624 QKIAVCGSVGAGKSSLLYAIL 644 (1467)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~ll 644 (1467)
-+++|+|..||||||+.+.+-
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998988778999999999
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=83.54 E-value=0.74 Score=18.74 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999967898895789999838
Q 000481 625 KIAVCGSVGAGKSSLLYAILG 645 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llG 645 (1467)
.++++|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=83.49 E-value=0.43 Score=20.83 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99996789889578999983
Q 000481 625 KIAVCGSVGAGKSSLLYAIL 644 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~ll 644 (1467)
+++|+|..||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=83.48 E-value=0.43 Score=20.84 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=21.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 188099996789889578999983888
Q 000481 621 KWAQKIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
++.-.++++|..|+|||||++.+.+.-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 985799999999989899999996688
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=83.45 E-value=0.39 Score=21.17 Aligned_cols=23 Identities=48% Similarity=0.635 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99996789889578999983888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
.++|+|..+||||||+++|+|+-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=83.45 E-value=0.42 Score=20.85 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999678988957899998388
Q 000481 625 KIAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe 646 (1467)
.+||+|.+.+|||||+++|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=83.40 E-value=0.41 Score=20.95 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99996789889578999983888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
.+.++|+.||||||+.+.|.-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=83.26 E-value=0.45 Score=20.59 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 69999999998606998--8999578889999979999999997749937999724
Q 000481 1356 GQRQLFCLGRVLLKRNR--ILVLDEANASIDSATDAILQRIIRQEFSNCTVITVAH 1409 (1467)
Q Consensus 1356 GQrQll~LARALLr~~~--ILiLDEaTs~lD~~Td~~Iq~~ir~~f~~~TvI~IAH 1409 (1467)
.+.+--.+++..++++. |+....++.....+....+.+.+... ..+|++++++
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk 207 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITK 207 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC-CCEEEEEEEC
T ss_conf 899999999999827775168763256310034999999973867-8858999820
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.26 E-value=0.75 Score=18.66 Aligned_cols=110 Identities=17% Similarity=0.223 Sum_probs=63.8
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 41880999967898895789999838888887289983909998267767988788997049999999999999994306
Q 000481 620 IKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWIQSGSIRDNILYGKPMDKARYDKAIKACALD 699 (1467)
Q Consensus 620 i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g~iayv~Q~~wi~~~TireNIlfg~~~~~~~y~~vi~~c~L~ 699 (1467)
+++..-+.+.||.|+|||+|.+++.+++.. .+-++. .
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~~---------~~~~~~----------------------------------~ 74 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFISIK----------------------------------G 74 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTTC---------EEEEEC----------------------------------H
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCC---------CEEEEE----------------------------------H
T ss_conf 998875788789987630477887877189---------479988----------------------------------7
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH---------HHHHHHHHHHHHH---C
Q ss_conf 988329999973136798766917999999999871599899980877766999---------9999999999782---3
Q 000481 700 KDINNFDHGDLTEIGQRGLNLSGGQKQRIQLARAVYNDADIYLFDDPFSAVDAH---------TAATLFNECVMAA---L 767 (1467)
Q Consensus 700 ~dl~~l~~GD~T~IGe~G~~LSGGQkqRi~LARAly~~~~i~lLDdp~salD~~---------~~~~if~~~~~~~---l 767 (1467)
.++.. +..| ...++-|-.+.+|-...|-|+++||.-+..... ..+.+....+... .
T Consensus 75 ~~l~~------~~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 142 (265)
T d1r7ra3 75 PELLT------MWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 142 (265)
T ss_dssp HHHHT------SCTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC---
T ss_pred HHHHH------CCCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99525------3165------15899999999998639843568754632455787678873799999999999962867
Q ss_pred --CCCEEEEECCCCCHHHC
Q ss_conf --99689998269431310
Q 000481 768 --EKKTVILVTHQVEFLSE 784 (1467)
Q Consensus 768 --~~kT~ilvTh~~~~l~~ 784 (1467)
.+.-+|..||+++.++.
T Consensus 143 ~~~~v~vi~ttn~~~~ld~ 161 (265)
T d1r7ra3 143 TKKNVFIIGATNRPDIIDP 161 (265)
T ss_dssp ---CCEEEECCBSCTTTSC
T ss_pred CCCCEEEEEECCCCHHCCH
T ss_conf 7799899991799222799
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.19 E-value=0.51 Score=20.11 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999588999988414
Q 000481 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~rl 1266 (1467)
.|+++|++|+|||||+++|.+-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.03 E-value=0.53 Score=19.98 Aligned_cols=88 Identities=17% Similarity=0.121 Sum_probs=50.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 18959999949999588999988414679863699979517999978885215786267754665567714999999999
Q 000481 1241 SEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDGVDICSMGLKDLRVKLSIIPQEPTLFRGSVRTNLDPLGLYSDD 1320 (1467)
Q Consensus 1241 ~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG~dI~~i~l~~LR~~isiIpQdp~LF~gTIR~NLdp~~~~sd~ 1320 (1467)
+.-+-|-++|..||||||+++.++.- .|.+.|+. ++++ +-+
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~--------D~~~---------------------------~~~ 52 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNR--------DTLG---------------------------SWQ 52 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEH--------HHHC---------------------------SHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEECH--------HHHH---------------------------HHH
T ss_conf 99989999899999899999999976----59789760--------7777---------------------------888
Q ss_pred HHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 9999999838814773077876542346888889069999-99999860699889995
Q 000481 1321 EIWKALEKCQLKTTISSLPNKLDSSVSDEGENWSAGQRQL-FCLGRVLLKRNRILVLD 1377 (1467)
Q Consensus 1321 ei~~aL~~~~L~~~v~~lp~gLdt~v~e~G~nLS~GQrQl-l~LARALLr~~~ILiLD 1377 (1467)
.+.+.++. .+..|.+..+. ..|++..+|+. +.+||..=-+..++.+|
T Consensus 53 ~~~~~~~~--------~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 53 RCVSSCQA--------ALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHH--------HHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHH--------HHHCCCCCEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999--------99779995551--76799999999999998558887999948
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=83.02 E-value=0.5 Score=20.25 Aligned_cols=31 Identities=26% Similarity=0.238 Sum_probs=24.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 9599999499995889999884146798636
Q 000481 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGS 1273 (1467)
Q Consensus 1243 GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~ 1273 (1467)
+..|+|.|..||||||+++.|...+......
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9889998999989899999999999876998
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.96 E-value=0.47 Score=20.42 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999678988957899998388
Q 000481 625 KIAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe 646 (1467)
-++++|+.|+|||||++.+.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.92 E-value=0.47 Score=20.42 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999678988957899998388
Q 000481 625 KIAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe 646 (1467)
.++++|...+|||||+++|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=82.68 E-value=0.35 Score=21.58 Aligned_cols=21 Identities=43% Similarity=0.774 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999949999588999988414
Q 000481 1246 VGVVGRTGSGKTTLISALFRL 1266 (1467)
Q Consensus 1246 vgIVGrTGSGKSTL~~~L~rl 1266 (1467)
|||+|++|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=82.57 E-value=0.8 Score=18.45 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=13.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 880999967898895789999838
Q 000481 622 WAQKIAVCGSVGAGKSSLLYAILG 645 (1467)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~llG 645 (1467)
++..++++|++|+||||.+.-|..
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 977999989999988999999999
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.56 E-value=0.8 Score=18.45 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=16.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0999967898895789999838
Q 000481 624 QKIAVCGSVGAGKSSLLYAILG 645 (1467)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~llG 645 (1467)
-.++++|..|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899298999999971
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=82.53 E-value=0.46 Score=20.56 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09999678988957899998388888
Q 000481 624 QKIAVCGSVGAGKSSLLYAILGEIPK 649 (1467)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~llGe~~~ 649 (1467)
..+.+.||.|||||||.++|.+++..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.47 E-value=0.61 Score=19.46 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=15.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8099996789889578999983888
Q 000481 623 AQKIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 623 G~~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
-..++|+|+.||||||+.+.|...+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.40 E-value=0.4 Score=21.05 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 59999949999588999988414
Q 000481 1244 TRVGVVGRTGSGKTTLISALFRL 1266 (1467)
Q Consensus 1244 ekvgIVGrTGSGKSTL~~~L~rl 1266 (1467)
-+|+|+|++|+|||||++.|.+-
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999999998899999999679
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.39 E-value=0.49 Score=20.27 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999678988957899998388
Q 000481 625 KIAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe 646 (1467)
.++++|..|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=82.38 E-value=0.81 Score=18.40 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=19.5
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 841880999967898895789999838
Q 000481 619 DIKWAQKIAVCGSVGAGKSSLLYAILG 645 (1467)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~llG 645 (1467)
-.-.|.-+.++|++|+||||+...++.
T Consensus 10 v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 10 VDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 999999999980899998999999998
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.37 E-value=0.47 Score=20.46 Aligned_cols=23 Identities=48% Similarity=0.618 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99996789889578999983888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
.++|+|...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.11 E-value=0.53 Score=20.03 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99996789889578999983888
Q 000481 625 KIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
.++++|+.|+|||||++.+.+.-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=81.79 E-value=0.37 Score=21.37 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=18.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999678988957899998388
Q 000481 624 QKIAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~llGe 646 (1467)
-.++|||-..+|||||++++.+-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=81.78 E-value=0.84 Score=18.23 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=21.7
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 841880999967898895789999838
Q 000481 619 DIKWAQKIAVCGSVGAGKSSLLYAILG 645 (1467)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~llG 645 (1467)
-+++|+++.|.|++|+|||+|..-++.
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 996983999994799999999999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.65 E-value=0.5 Score=20.24 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999499995889999884146
Q 000481 1245 RVGVVGRTGSGKTTLISALFRLV 1267 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~rl~ 1267 (1467)
++++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=81.58 E-value=0.6 Score=19.55 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=18.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88099996789889578999983888
Q 000481 622 WAQKIAVCGSVGAGKSSLLYAILGEI 647 (1467)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~llGe~ 647 (1467)
+..+++|+|+.||||||+.+.|.-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.58 E-value=0.45 Score=20.61 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 880999967898895789999838888
Q 000481 622 WAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 622 ~G~~~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
++.+++|-|+.||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=81.52 E-value=0.51 Score=20.16 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18959999949999588999988414
Q 000481 1241 SEGTRVGVVGRTGSGKTTLISALFRL 1266 (1467)
Q Consensus 1241 ~~GekvgIVGrTGSGKSTL~~~L~rl 1266 (1467)
++.-||.+||++|+|||||++.|.+-
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 77778999999998989999999678
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=81.49 E-value=0.35 Score=21.61 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999949999588999988414
Q 000481 1245 RVGVVGRTGSGKTTLISALFRL 1266 (1467)
Q Consensus 1245 kvgIVGrTGSGKSTL~~~L~rl 1266 (1467)
.|||+|++++|||||++.|.+-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.35 E-value=0.58 Score=19.65 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999678988957899998388
Q 000481 625 KIAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe 646 (1467)
.++++|..|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.33 E-value=0.62 Score=19.39 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=31.6
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 8418809999678988957899998388888872899839099982677
Q 000481 619 DIKWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1467)
Q Consensus 619 ~i~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g~iayv~Q~~ 667 (1467)
-+++|+++.|.|+.|||||++...++.+.............+.|.....
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 81 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH
T ss_conf 9768979999889988788999999999974443166662488740177
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=81.17 E-value=0.69 Score=19.00 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=27.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 1895999994999958899998841467986369997
Q 000481 1241 SEGTRVGVVGRTGSGKTTLISALFRLVEPAGGSILID 1277 (1467)
Q Consensus 1241 ~~GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~ID 1277 (1467)
|+|-+|.|+|+.||||||+.+.|..-+ |-..|+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~ 33 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLA 33 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 996389998999998899999999986----985775
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=81.07 E-value=0.54 Score=19.93 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999678988957899998388
Q 000481 625 KIAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llGe 646 (1467)
.++++|+.|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999648
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=80.94 E-value=0.54 Score=19.90 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=22.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1880999967898895789999838888
Q 000481 621 KWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
++.-+++|-|..||||||+++.|...+.
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9861999889999888999999998707
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=80.93 E-value=0.56 Score=19.76 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999678988957899998388
Q 000481 624 QKIAVCGSVGAGKSSLLYAILGE 646 (1467)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~llGe 646 (1467)
-.++|+|...+|||||++++.+.
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 37999789999899999999778
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=80.91 E-value=0.57 Score=19.75 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599999499995889999884146
Q 000481 1244 TRVGVVGRTGSGKTTLISALFRLV 1267 (1467)
Q Consensus 1244 ekvgIVGrTGSGKSTL~~~L~rl~ 1267 (1467)
-+|.|+|+.||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.90 E-value=0.41 Score=20.97 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99994999958899998841467
Q 000481 1246 VGVVGRTGSGKTTLISALFRLVE 1268 (1467)
Q Consensus 1246 vgIVGrTGSGKSTL~~~L~rl~~ 1268 (1467)
|.|+|||||||+||.+.|..-.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.71 E-value=0.63 Score=19.34 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=24.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1880999967898895789999838888
Q 000481 621 KWAQKIAVCGSVGAGKSSLLYAILGEIP 648 (1467)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~llGe~~ 648 (1467)
++|.+++|.|+-||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=80.56 E-value=0.59 Score=19.57 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599999499995889999884146
Q 000481 1244 TRVGVVGRTGSGKTTLISALFRLV 1267 (1467)
Q Consensus 1244 ekvgIVGrTGSGKSTL~~~L~rl~ 1267 (1467)
-.|+|-|..||||||+++.|.+-.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=80.56 E-value=0.66 Score=19.18 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=25.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 959999949999588999988414679863699979
Q 000481 1243 GTRVGVVGRTGSGKTTLISALFRLVEPAGGSILIDG 1278 (1467)
Q Consensus 1243 GekvgIVGrTGSGKSTL~~~L~rl~~~~~G~I~IDG 1278 (1467)
...|.|+|+.||||||+...|..-+ |-+.|+.
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~~ 37 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF----GWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCCEECH
T ss_conf 9489998999998899999999997----9926721
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.47 E-value=0.92 Score=17.89 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=24.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 961895999994999958899998841467
Q 000481 1239 TFSEGTRVGVVGRTGSGKTTLISALFRLVE 1268 (1467)
Q Consensus 1239 ~I~~GekvgIVGrTGSGKSTL~~~L~rl~~ 1268 (1467)
.+++...+-+.|+.|+|||++++++.+...
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=80.35 E-value=0.93 Score=17.86 Aligned_cols=46 Identities=13% Similarity=0.246 Sum_probs=30.8
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHH
Q ss_conf 6998899957888999997999999999774--993799972491001
Q 000481 1369 KRNRILVLDEANASIDSATDAILQRIIRQEF--SNCTVITVAHRVPTV 1414 (1467)
Q Consensus 1369 r~~~ILiLDEaTs~lD~~Td~~Iq~~ir~~f--~~~TvI~IAHRl~ti 1414 (1467)
.+..++++||.-.+-|++--..+-..+-+.+ .++++++++|..+-.
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~ 160 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELT 160 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHH
T ss_conf 977278554545686233200258888888862376137865202333
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=80.32 E-value=0.93 Score=17.85 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=24.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCC
Q ss_conf 18809999678988957899998388888872899839099982677
Q 000481 621 KWAQKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTS 667 (1467)
Q Consensus 621 ~~G~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g~iayv~Q~~ 667 (1467)
++...++++|++|+||||.+.-|.-.+. ..| .+++.+.=+.
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g-----~kV~lit~Dt 50 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYK-KKG-----FKVGLVGADV 50 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHH-HTT-----CCEEEEECCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CCEEEEEEEC
T ss_conf 9998999989999998999999999999-779-----9369997202
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=80.11 E-value=0.27 Score=22.62 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=29.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCC
Q ss_conf 0999967898895789999838888887289983909998267767
Q 000481 624 QKIAVCGSVGAGKSSLLYAILGEIPKISGTVNLYGSIAYVSQTSWI 669 (1467)
Q Consensus 624 ~~~~ivG~~GsGKStLl~~llGe~~~~~G~i~~~g~iayv~Q~~wi 669 (1467)
-+++|+|.+||||||+.+++...+... +-+.+.++|+.+-
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~------~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRRE------GVKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH------TCCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC------CCCEEEEECCCCC
T ss_conf 899998999780999999999997156------9976999477787
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.04 E-value=0.67 Score=19.12 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999967898895789999838
Q 000481 625 KIAVCGSVGAGKSSLLYAILG 645 (1467)
Q Consensus 625 ~~~ivG~~GsGKStLl~~llG 645 (1467)
.++++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|