Citrus Sinensis ID: 000499
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1460 | ||||||
| 359479667 | 1823 | PREDICTED: uncharacterized protein LOC10 | 0.982 | 0.786 | 0.631 | 0.0 | |
| 147802454 | 1837 | hypothetical protein VITISV_039693 [Viti | 0.955 | 0.759 | 0.607 | 0.0 | |
| 255567514 | 1938 | ATP binding protein, putative [Ricinus c | 0.883 | 0.665 | 0.618 | 0.0 | |
| 356503558 | 1830 | PREDICTED: uncharacterized protein LOC10 | 0.976 | 0.779 | 0.574 | 0.0 | |
| 356570592 | 1773 | PREDICTED: uncharacterized protein LOC10 | 0.95 | 0.782 | 0.561 | 0.0 | |
| 357440635 | 1796 | Centromere protein [Medicago truncatula] | 0.975 | 0.792 | 0.547 | 0.0 | |
| 356502801 | 1907 | PREDICTED: uncharacterized protein LOC10 | 0.931 | 0.713 | 0.566 | 0.0 | |
| 186478086 | 1733 | kinase interacting (KIP1-like) protein [ | 0.965 | 0.813 | 0.531 | 0.0 | |
| 4587570 | 1744 | Strong similarity to gi|2244833 centrome | 0.975 | 0.816 | 0.529 | 0.0 | |
| 297848532 | 1736 | kinase interacting family protein [Arabi | 0.968 | 0.814 | 0.530 | 0.0 |
| >gi|359479667|ref|XP_003632326.1| PREDICTED: uncharacterized protein LOC100852899 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1693 bits (4384), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 922/1461 (63%), Positives = 1135/1461 (77%), Gaps = 27/1461 (1%)
Query: 1 MAAVAHADSKRKYSWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEM 60
MA+++H DS+RKYSWWWDSHISPKNSKWLQENLTDMD KVKQMIKLIEEDADSFARRAEM
Sbjct: 1 MASLSHPDSRRKYSWWWDSHISPKNSKWLQENLTDMDAKVKQMIKLIEEDADSFARRAEM 60
Query: 61 YYKKRPELMKLVEEFYRAYRALAERYDHATGALRQAHRTMAEAFPNQVPFALGDDSPAGT 120
YYKKRPELMKLVEEFYRAYRALAERYDHATGALRQA RTMAEAFPNQVPF L DDSPAG+
Sbjct: 61 YYKKRPELMKLVEEFYRAYRALAERYDHATGALRQAQRTMAEAFPNQVPF-LTDDSPAGS 119
Query: 121 --EADPRTPELAPA-RAIFYPDELQNDSLGLSSSHLLALKKNGAFTDDSDTVTSRRGLKQ 177
EA+P TPE+ PA RA F PDELQ D+LGLSSSH A+K+NGAFT++ D+V+S++GLKQ
Sbjct: 120 SAEAEPHTPEMPPAVRAFFEPDELQKDALGLSSSHFHAVKRNGAFTEEPDSVSSKKGLKQ 179
Query: 178 LNDFLGSGEKVTHGKFGEGRARKGLNFHDAEENEQ-LQHNESYDIKARVPSESERMGKAE 236
LND GSG+ KF EGRARKGLNFHDA+E E+ +Q+ +S+
Sbjct: 180 LNDLFGSGDAPNIAKFAEGRARKGLNFHDADEKERNVQNTDSH---------------TA 224
Query: 237 MEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQ 296
EIL LK +LA+LEAEKEAG +Q++QSLERLSNLE+EVS A+EDSKGL+E+A AE EVQ
Sbjct: 225 TEILALKESLARLEAEKEAGRVQHQQSLERLSNLEAEVSRAQEDSKGLNERAGKAENEVQ 284
Query: 297 TLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKL 356
TLKEAL +LE ERE ++ QYQQCL+++S++E+ IS ++ DA +L++RASK+E+EA LK
Sbjct: 285 TLKEALTKLEAERETSLLQYQQCLERISDLERTISHSQEDAGKLNERASKSEVEAAALKQ 344
Query: 357 DLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGK 416
DLAR+E+EKE A+++Y++C IS LE KL+ +E+DS+RIN+ A+KAE EVE LKQA+
Sbjct: 345 DLARVESEKEGALLQYKQCLEKISDLESKLVQAEDDSRRINERAEKAEREVETLKQAVAS 404
Query: 417 LTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERS 476
LTEEKEA A QYQQCLE I+ LE K++ AEEEAQRL+ E+DNG AKLKGAEE+CLLLER+
Sbjct: 405 LTEEKEAAARQYQQCLETIASLELKISCAEEEAQRLNGEIDNGVAKLKGAEEQCLLLERT 464
Query: 477 NQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQS 536
N +L ELES+ QK+G+Q +ELTEKQKELGRLWT IQEERLRF+EAET FQ+LQHLHSQS
Sbjct: 465 NHSLQFELESLAQKLGAQCEELTEKQKELGRLWTSIQEERLRFMEAETTFQSLQHLHSQS 524
Query: 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEI 596
Q+ELRSLA ELQ++ QILKDM T NQ LQ+EV KVKEEN+GLNE NLSSA SIKN+QDEI
Sbjct: 525 QEELRSLATELQSKGQILKDMETHNQGLQDEVHKVKEENRGLNEFNLSSAVSIKNMQDEI 584
Query: 597 LSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFG 656
LSLRETI KLE EVELRVDQRNALQQEIYCLKEELN+LNK ++AM++QVE V L PE FG
Sbjct: 585 LSLRETITKLEMEVELRVDQRNALQQEIYCLKEELNDLNKNYRAMLDQVEGVGLKPECFG 644
Query: 657 LSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRD 716
LSVKELQ+ENS LKE+ +R + E VALLEKLEIMEKLLEKNA+LENSLSDL+ ELEG+R+
Sbjct: 645 LSVKELQEENSNLKEICQRGKSENVALLEKLEIMEKLLEKNALLENSLSDLSAELEGLRE 704
Query: 717 KVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEG 776
KVKALEE Q+LL EKS LVAE +L S LQ +L+KLS++N + NSL DANAE+EG
Sbjct: 705 KVKALEESYQSLLGEKSILVAENATLTSHLQTKTNHLEKLSEKNMLMENSLSDANAELEG 764
Query: 777 LRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEE 836
LR +SK LEDSC LLDNEKS LI+ER L+SQL+ ++ L+DLE+ Y ELE +Y GLE+E
Sbjct: 765 LRTRSKGLEDSCQLLDNEKSGLISERETLISQLEATQQRLEDLERRYTELEEKYFGLEKE 824
Query: 837 KESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDK 896
KESTL KVEELQ SL+AEK + A+F QLSETRLAGM+S+I LQ EG CRK+ +EEE +K
Sbjct: 825 KESTLCKVEELQVSLEAEKLEQANFAQLSETRLAGMKSEIHLLQVEGRCRKEEFEEEQNK 884
Query: 897 ALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSL 956
+++QIEIFI QK +Q+L KNFSLL ECQKL + S LSEKLI +LE+EN EQQ ++ SL
Sbjct: 885 VVNSQIEIFIFQKCVQELAAKNFSLLTECQKLSEVSKLSEKLISELEHENLEQQVQVNSL 944
Query: 957 VDQIKVLRVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQ 1016
VDQ+K+LR +Y + L+IDA+H E K++QD QT+L+ + +L+ + S+ K ++
Sbjct: 945 VDQVKMLRTGMYHVSRALDIDAEHRAEDKIDQD---QTVLNAIICQLENTKSSLCKTQDE 1001
Query: 1017 NHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEEL 1076
N Q +++ +LV +L QL LEA LATERN L EE RI+SEQF LQ E +L E++E+L
Sbjct: 1002 NQQSIVQKLVLVTVLEQLGLEATQLATERNTLDEECRIRSEQFSSLQSETHQLLEVSEKL 1061
Query: 1077 RVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEK 1136
R++V E +H EEVL E+ L L ELQ A +LQ +N +L+EK SL KK L L+EEK
Sbjct: 1062 RLKVREGDHKEEVLTAEIGILQGKLLELQEAHGNLQKENSLILEEKGSLSKKFLSLEEEK 1121
Query: 1137 HSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKD 1196
LEEEN V+F ETIS SNLS IFKD I+EK V++ +L +NL++L +N LEEKVR +
Sbjct: 1122 RILEEENWVVFGETISLSNLSLIFKDFITEKSVQLKELGQNLEELHNVNYALEEKVRTME 1181
Query: 1197 GKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILC 1256
GKL V+M+N LK SLEKSENEL + DQLN EI NG+D+LSRKE EL A Q L
Sbjct: 1182 GKLGMVEMENFHLKDSLEKSENELNTVRSFADQLNHEIENGRDILSRKETELLEAGQKLS 1241
Query: 1257 SLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTEDYDCQIKETRCIHELNMKLEA 1316
+LQ+E+ ELH VE + + DE K+I+EDQ KQI KL+E+ D Q K+ C+ E+N LEA
Sbjct: 1242 ALQDEKAELHKTVEVVKSECDEVKVIREDQEKQILKLSEENDHQKKQNGCLREVNRGLEA 1301
Query: 1317 ELGKLLEELEGTRYREESLYHELEKERKHAGLWETQATELFSELQISSVCEVLRNEKAHE 1376
+L KL EE+E + REE+L H+L++ R LWETQA FSELQIS+V E EK HE
Sbjct: 1302 KLWKLCEEIEEAKVREETLNHDLQRGRDEVELWETQAAAFFSELQISNVREAFFEEKVHE 1361
Query: 1377 LSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSIRSLEN- 1435
L AC++LE+ SNS EI LKE+ N LE ENGGLK LAA P +I L+DS+ +LEN
Sbjct: 1362 LIEACKSLENISNSRSREIELLKERVNKLEGENGGLKTQLAAYTPTIICLRDSVAALENR 1421
Query: 1436 ---HTLLHKADNDEVKVMSIV 1453
HT LH+AD + K +V
Sbjct: 1422 TLSHTNLHQADTKDKKDAKLV 1442
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147802454|emb|CAN70401.1| hypothetical protein VITISV_039693 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1595 bits (4130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 893/1469 (60%), Positives = 1096/1469 (74%), Gaps = 74/1469 (5%)
Query: 36 MDVKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATGALRQ 95
MD KVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATGALRQ
Sbjct: 1 MDAKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATGALRQ 60
Query: 96 AHRTMAEAFPNQVPFALGDDSPAGT--EADPRTPELAPA-RAIFYPDELQNDSLGLSSSH 152
A RTMAEAFPNQVPF L DDSPAG+ EA+P TPE+ PA RA F PDELQ D+LGLSSSH
Sbjct: 61 AQRTMAEAFPNQVPF-LTDDSPAGSSAEAEPHTPEMPPAVRAFFEPDELQKDALGLSSSH 119
Query: 153 LLALKKNGAFTDDSDTVTSRRGLKQLNDFLGSGEKVTHGKFGEGRARKGLNFHDAEENEQ 212
A+K+NGAFT++ D+V+S++GLKQLND GSG+ KF EGRARKGLNFHDA+E E+
Sbjct: 120 FHAVKRNGAFTEEPDSVSSKKGLKQLNDLFGSGDAPNIAKFAEGRARKGLNFHDADEKER 179
Query: 213 LQHNESYDIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLES 272
N P+ +E IL LK +LA+LEAEKEAG +Q++QSLERLSNLE+
Sbjct: 180 NVQNTDR------PTATE--------ILALKESLARLEAEKEAGRVQHQQSLERLSNLEA 225
Query: 273 EVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISR 332
EVS A+EDSKGL+E+A AE EVQTLKEAL +LE ERE ++ QYQQCL+++S++E+ IS
Sbjct: 226 EVSRAQEDSKGLNERAGKAENEVQTLKEALTKLEAERETSLLQYQQCLERISDLERTISH 285
Query: 333 AEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEED 392
++ DA +L++RASK+E+EA LK DLAR+E+EKE A+++Y++C IS LE KL+ +EED
Sbjct: 286 SQEDAGKLNERASKSEVEAAALKQDLARVESEKEGALLQYKQCLEKISDLESKLVQAEED 345
Query: 393 SKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRL 452
++RIN+ A+KAE EVE LKQA+ LTEEKEA A QYQQCLE I+ LE K++ AEEEAQRL
Sbjct: 346 ARRINERAEKAEREVETLKQAVASLTEEKEAAARQYQQCLETIASLELKISCAEEEAQRL 405
Query: 453 HSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCI 512
+ E+DNG AKLKGAEE+CLLLER+N +L ELES+ QK+G+Q +ELTEKQKELGRLWT I
Sbjct: 406 NGEIDNGVAKLKGAEEQCLLLERTNHSLQFELESLAQKLGAQCEELTEKQKELGRLWTSI 465
Query: 513 QEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVK 572
QEERLRF+EAET FQ+LQHLHSQSQ+ELRSLA ELQ + QILKDM T NQ LQ+EV KVK
Sbjct: 466 QEERLRFMEAETTFQSLQHLHSQSQEELRSLATELQXKGQILKDMETHNQGLQDEVHKVK 525
Query: 573 EENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELN 632
EEN+GLNE NLSSA SIKN+QDEILSLRETI KLE EVELRVDQRNALQQEIYCLKEELN
Sbjct: 526 EENRGLNEFNLSSAVSIKNMQDEILSLRETITKLEMEVELRVDQRNALQQEIYCLKEELN 585
Query: 633 ELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEK 692
+LNK ++AM++QVE V L PE FGLSVKELQ+ENS LKE+ +R + E VALLEKLEIMEK
Sbjct: 586 DLNKNYRAMLDQVEGVGLKPECFGLSVKELQEENSNLKEICQRGKSENVALLEKLEIMEK 645
Query: 693 LLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNEN 752
LLEKNA+LENSLSDL+ ELEG+R+KVKALEE Q+LL EKS LVAE +L S LQ +
Sbjct: 646 LLEKNALLENSLSDLSAELEGLREKVKALEESYQSLLGEKSILVAENATLTSHLQTKTNH 705
Query: 753 LKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIA 812
L+KLS++N + NSL DANAE+EGLR +SK LEDSC LLDNEKS LI+ER L+SQL+
Sbjct: 706 LEKLSEKNMLMENSLSDANAELEGLRTRSKGLEDSCQLLDNEKSGLISERETLISQLEAT 765
Query: 813 RKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGM 872
++ L+DLE+ Y ELE +Y GLE+EKESTL KVEELQ SL+AEK + A+F QLSETRLAGM
Sbjct: 766 QQRLEDLERRYTELEEKYFGLEKEKESTLCKVEELQVSLEAEKLEQANFAQLSETRLAGM 825
Query: 873 ESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQES 932
+S+I LQ EG CRK+ +EEE +K +++QIEIFI QK +Q+L KNFSLL ECQKL + S
Sbjct: 826 KSEIHLLQVEGRCRKEEFEEEQNKVVNSQIEIFIFQKCVQELAAKNFSLLTECQKLXEVS 885
Query: 933 SLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEILEIDADHGCETKMEQDQSH 992
LSEKLI +LE+EN EQQ ++ SL DQ+K+LR +Y + L+IDA+H E K++QD
Sbjct: 886 KLSEKLISELEHENLEQQVQVNSLFDQVKMLRTGMYHVSRALDIDAEHRAEDKIDQD--- 942
Query: 993 QTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEF 1052
QT+L+ + +L+ + S+ K ++N Q +++ +LV +L QL LEA LATERN L EE
Sbjct: 943 QTVLNDIICQLENTKSSLCKTQDENQQSIVQKLVLVTVLEQLGLEATQLATERNTLDEEC 1002
Query: 1053 RIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQ 1112
RI+SEQF LQ E +L E+NE+LR++V E +H EEVL E+ L L ELQ A +LQ
Sbjct: 1003 RIRSEQFSSLQSETHQLLEVNEKLRLKVREGDHKEEVLTAEIGILQGKLLELQEAHGNLQ 1062
Query: 1113 DQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIA 1172
+N +L+EK SL KK L L+EEK LEEEN V+F ETIS SNLS IFKD I+EK V++
Sbjct: 1063 KENSLMLEEKGSLSKKFLSLEEEKRILEEENWVVFGETISLSNLSLIFKDFITEKSVQLK 1122
Query: 1173 DLSENLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNC 1232
+L +NL++L +N LEEKVR +GKL V+M+N LK SLEKSENEL + DQLN
Sbjct: 1123 ELGQNLEELHNVNYALEEKVRTMEGKLGMVEMENFHLKDSLEKSENELNTVRSFADQLNH 1182
Query: 1233 EIANGKDLLSRKEKELFVAEQILCSLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRK 1292
EI NG+D+LSRK+ EL A Q L +LQ+E+ ELH VE + + DE K+I+EDQ KQI K
Sbjct: 1183 EIENGRDILSRKKTELLEAGQKLSALQDEKAELHKTVEVVKSECDEVKVIREDQEKQILK 1242
Query: 1293 LTEDYDCQIKETRCIHELNMKLEAELGKLLEELEGTRYREESLYHELEKERKHAGLWETQ 1352
L+E+ D Q KE C+ E+N LEA+L KL EE+E + REE+L H+L++ R LWETQ
Sbjct: 1243 LSEENDHQKKENGCLREVNRGLEAKLWKLCEEIEEAKVREETLNHDLQRGRDEVELWETQ 1302
Query: 1353 ATELFSELQISSVCEVLRNEKAHELSRACENLEDR------------------------- 1387
A FSELQIS+V E EK HEL +ACE LE+R
Sbjct: 1303 AAAFFSELQISNVREAFFEEKVHELIKACEGLENRSHLKNMEIELWETQAATFFGELQIS 1362
Query: 1388 ------------------------SNSNDIEINQLKEKANALECENGGLKAHLAASIPAV 1423
SNS EI LKE+ N LE ENGGLK LAA P +
Sbjct: 1363 TVHEALFKEKVHELIEACKSLENISNSRSREIELLKERVNKLEGENGGLKTQLAAYTPTI 1422
Query: 1424 ISLKDSIRSLEN----HTLLHKADNDEVK 1448
I L+DS+ +LEN HT LH+AD + K
Sbjct: 1423 ICLRDSVAALENRTLSHTNLHQADTKDEK 1451
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255567514|ref|XP_002524736.1| ATP binding protein, putative [Ricinus communis] gi|223535920|gb|EEF37579.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1545 bits (4000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/1351 (61%), Positives = 1039/1351 (76%), Gaps = 61/1351 (4%)
Query: 36 MDVKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATGALRQ 95
MDVKVK MIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATG +RQ
Sbjct: 1 MDVKVKHMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATGVIRQ 60
Query: 96 AHRTMAEAFPNQVPFALGDDSPAG-TEADPRTPELAPARAIFYPDELQNDSLGLSSSHLL 154
AHRTMAEAFPNQVPF LGDDSP+G ++ +PRTPE+ P RA+F PDELQ D+LG+S SHL
Sbjct: 61 AHRTMAEAFPNQVPFMLGDDSPSGFSDGEPRTPEMPPIRALFDPDELQKDALGVSPSHLH 120
Query: 155 ALKKNGAFTDDSDTVTSRRGLKQLNDFLGSGEKVTHGKFGEGRARKGLNFHDAEENEQLQ 214
++K+NGAFT++SD+V R+G KQ ND GS E V + K EG+ARKGLNFHD EE + +Q
Sbjct: 121 SIKRNGAFTEESDSVPGRKGSKQSNDLFGSAEGVNNAKVTEGKARKGLNFHDTEE-QNVQ 179
Query: 215 HNESYDIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEV 274
+N DIKARVPS+SER+GKAEMEILTLKNALAKLEAEKEAGLLQY+QSLERLSNLESEV
Sbjct: 180 NN---DIKARVPSDSERVGKAEMEILTLKNALAKLEAEKEAGLLQYQQSLERLSNLESEV 236
Query: 275 SHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAE 334
S A+EDS GL+E+A AE EVQ LKEAL RLE ERE++ QYQQCLDK++NME IS A+
Sbjct: 237 SRAKEDSVGLNERAGKAETEVQFLKEALIRLEAERESSFLQYQQCLDKIANMENCISHAQ 296
Query: 335 ADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSK 394
DA EL++RASKAE E QTLK +LAR+EAEKE+A+ +Y +C IS L++KLLH+EED++
Sbjct: 297 KDAGELNERASKAETEVQTLKQELARLEAEKESALHQYNQCLEKISDLQEKLLHAEEDAR 356
Query: 395 RINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHS 454
R ++ ADKAE EVE LKQ + KLT+E EA A+ +QQCL+ IS LE KLA A+EEAQRL+S
Sbjct: 357 RFSERADKAEREVETLKQEVAKLTKENEAAAVLFQQCLDTISGLERKLASAQEEAQRLNS 416
Query: 455 ELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQE 514
E+D+G KLKG EE+CLLLE+SNQ++HSELE++ Q+M +QS+ELT+KQKELGRLWTC+QE
Sbjct: 417 EIDDGIVKLKGVEERCLLLEKSNQSMHSELETVAQRMAAQSEELTDKQKELGRLWTCVQE 476
Query: 515 ERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEE 574
ERLRF+EAETAFQTLQHLHS+SQ+ELRS+ AE+QN+AQIL+D+ N++L+ VE+VK E
Sbjct: 477 ERLRFLEAETAFQTLQHLHSESQEELRSMVAEIQNKAQILQDLEAHNRTLENVVEEVKME 536
Query: 575 NKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNEL 634
NKGLNE+N+SSA +I+NLQ EI SLRE IGKLEA+VELR+DQRNALQQEIYCLKEEL++
Sbjct: 537 NKGLNEVNMSSALTIENLQAEISSLREIIGKLEADVELRLDQRNALQQEIYCLKEELSDH 596
Query: 635 NKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLL 694
NKK+QA++EQ+ESV +PE G SVK+LQDEN KLKE YE++R EKVALL+KLEIMEKL+
Sbjct: 597 NKKYQAIMEQLESVGFSPECLGSSVKDLQDENIKLKECYEQERSEKVALLDKLEIMEKLI 656
Query: 695 EKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLK 754
EK A+LENSLSDLNVELEGVR++V+ALEE CQ+LL EKS LV+EK +L SQLQ +NL+
Sbjct: 657 EKTALLENSLSDLNVELEGVRERVRALEESCQSLLGEKSALVSEKAALVSQLQIATDNLE 716
Query: 755 KLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARK 814
KL+++NNFL NSLFDA+AEVEGLR KSKSLED C LL NEKS L+T + NL+SQLD+ +K
Sbjct: 717 KLTEKNNFLENSLFDAHAEVEGLRVKSKSLEDLCTLLANEKSDLVTVKGNLISQLDVTQK 776
Query: 815 GLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMES 874
L+DLE +Y +LEG+Y LE+E+ES L +VE+L+ LDA+KQ+HAS QLSE++LAGM +
Sbjct: 777 RLEDLENNYTDLEGKYFSLEKERESKLHEVEKLRVYLDAQKQEHASLAQLSESQLAGMAT 836
Query: 875 QISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSL 934
QI LQEEG C +K YEEEL++A AQ + FI QK +QDL E NF+LL ECQKLL+ S L
Sbjct: 837 QIRLLQEEGQCMRKEYEEELEEAFTAQTQTFILQKCVQDLGENNFTLLLECQKLLEASKL 896
Query: 935 SEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEILEIDADHGCETKMEQDQSHQT 994
SEKLI LE+EN EQQ E++SL DQI +LR LY++L+ LE+D++ CE K EQD Q
Sbjct: 897 SEKLISLLEHENLEQQVEVKSLYDQINMLRRGLYRVLKTLELDSNQCCEDKAEQD---QM 953
Query: 995 LLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRI 1054
LL+ KL+E Q L+ +N Q++IENS++ LLGQL+ E ENL T +N L EE
Sbjct: 954 LLNYAVNKLQETQKFFLETQYENQQLIIENSVIFTLLGQLQQEVENLVTAKNTLDEELAH 1013
Query: 1055 QSEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQ 1114
+SEQF+VL RE KL+E N+ELR+++ ER++ EEVLK E+ +LH L +LQGA ++L+++
Sbjct: 1014 RSEQFLVLHRESQKLSETNKELRLKIVERDNKEEVLKVELNNLHGQLLDLQGAYKNLKEE 1073
Query: 1115 NCKVLDEKKSLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADL 1174
NCKVLDE++SLMK V DL EEK LE+ENC +F ET+S S LS IF+DVISEK ++ L
Sbjct: 1074 NCKVLDEQRSLMKSVSDLAEEKTDLEDENCTIFAETVSLSVLSVIFRDVISEKFSEVVQL 1133
Query: 1175 SENLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEI 1234
SENLDKL NN+L EKV+ +GKL ++
Sbjct: 1134 SENLDKLHHANNDLNEKVKRMEGKLVEL-------------------------------- 1161
Query: 1235 ANGKDLLSRKEKELFVAEQILCSLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLT 1294
+L +++EL H VEDL K DE ++I+ DQ KQI KL+
Sbjct: 1162 ----SVLQHEKREL-----------------HKMVEDLKSKCDEFELIRSDQEKQIMKLS 1200
Query: 1295 EDYDCQIKETRCIHELNMKLEAELGKLLEELEGTRYREESLYHELEKERKHAGLWETQAT 1354
DYD + E CI E N +LE LGKL EEL T+ REESL EL+K+ A E+QA
Sbjct: 1201 GDYDHRSMEVECIREANRELETNLGKLNEELRETKSREESLNSELQKKIFEAQTSESQAI 1260
Query: 1355 ELFSELQISSVCEVLRNEKAHELSRACENLE 1385
LF ELQIS V + L K H+L C+ +E
Sbjct: 1261 VLFGELQISLVQQALFEGKVHDLKSKCDEIE 1291
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503558|ref|XP_003520574.1| PREDICTED: uncharacterized protein LOC100810726 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1494 bits (3868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 828/1441 (57%), Positives = 1078/1441 (74%), Gaps = 15/1441 (1%)
Query: 1 MAAVAHADSKRKYSWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEM 60
MA ++HADS+R YSWWWDSHISPKNSKWLQENLTDMD KVKQMIKLIEEDADSFARRAEM
Sbjct: 1 MATLSHADSRRMYSWWWDSHISPKNSKWLQENLTDMDSKVKQMIKLIEEDADSFARRAEM 60
Query: 61 YYKKRPELMKLVEEFYRAYRALAERYDHATGALRQAHRTMAEAFPNQVPFALGDDSP--A 118
YYKKRPELMKLVEEFYRAYRALAERYDHATG +RQAH TMAEAFPNQ P A DDSP +
Sbjct: 61 YYKKRPELMKLVEEFYRAYRALAERYDHATGVIRQAHHTMAEAFPNQGPPAPADDSPVVS 120
Query: 119 GTEADPRTPELAPARAIFY-PDELQNDSLGLSSSHLLALKKNGAFTDDSDTVTSRRGLKQ 177
E +P TPE F D+LQ D+ S+H A+ +NG++TD++D+ SR+GLKQ
Sbjct: 121 SMETEPHTPETIHFSCAFLDSDDLQKDA----STHFHAINRNGSYTDEADSCISRKGLKQ 176
Query: 178 LNDFLGSGEKVTHGKFGEGRARKGLNFHDAEENEQLQHNESYDIKARVPSESERMGKAEM 237
LND SGE V+H K AR+GLNF D EE + N S D +A+V SESERM KAE
Sbjct: 177 LNDLFMSGESVSHAK----SARRGLNFLDPEEING-KDNGSQDTRAQVLSESERMTKAEA 231
Query: 238 EILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQT 297
EIL LK ALAKLE+EKE GLLQY+ SLERL NLESE+SHARE S+GL E+A+ AEAEVQT
Sbjct: 232 EILALKKALAKLESEKETGLLQYQHSLERLFNLESEMSHAREHSQGLDERANKAEAEVQT 291
Query: 298 LKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLD 357
LKEAL +++EREA+ QYQQC +KL N+EKNIS A+ D EL++RA++AE EA++LK +
Sbjct: 292 LKEALTEIQSEREASFLQYQQCSEKLYNLEKNISSAQKDVGELNERATRAETEAESLKQE 351
Query: 358 LARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKL 417
LAR+EAEKE A+V+Y + M+S LE++L +EE++ RIN+ A A+ E+E +K + KL
Sbjct: 352 LARLEAEKEDALVQYNQSLEMLSKLEERLTQAEENAMRINEQAIAAKDEIEGMKLEIAKL 411
Query: 418 TEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSN 477
TEEKE AL YQQCLE IS LEHKL+ A+EE RL+ ++++G KL +E+KC+LLE SN
Sbjct: 412 TEEKEDAALCYQQCLEIISSLEHKLSCAQEEVHRLNCKINDGVEKLHNSEQKCVLLETSN 471
Query: 478 QTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQ 537
QTL SEL+S+ QK+G QS+EL+EKQKELGRLWTCIQEERL+F+EAE AFQTLQ+LHSQSQ
Sbjct: 472 QTLQSELQSLAQKLGFQSEELSEKQKELGRLWTCIQEERLQFIEAEAAFQTLQNLHSQSQ 531
Query: 538 DELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEIL 597
+ELRSLA +L ++A+IL++ + Q+L++E+ K KEEN LNE+ LSS+ SIKNLQ+EIL
Sbjct: 532 EELRSLANDLHSKAEILENTESHKQALEDEIYKTKEENTTLNEIKLSSSLSIKNLQNEIL 591
Query: 598 SLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGL 657
+LRE I KLE EV L+VD+RNALQQEIYCLK+ELN+++K+H++M+E V S L+P+ F
Sbjct: 592 NLREIIKKLELEVGLQVDERNALQQEIYCLKDELNDVSKRHESMMEDVRSTDLDPQCFVS 651
Query: 658 SVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDK 717
VK+LQD+NSKL E E + EK AL EKLEIMEKLLEKN VLE SLS L VELE R K
Sbjct: 652 YVKKLQDKNSKLNERCETYKNEKEALKEKLEIMEKLLEKNTVLERSLSVLTVELESTRGK 711
Query: 718 VKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGL 777
VK LEE C++LLA+KSTL +EK +LFSQLQ E L+ LS++N+ L +SLFD NAE+EGL
Sbjct: 712 VKVLEETCESLLAKKSTLASEKATLFSQLQTTAEKLENLSEKNHLLESSLFDVNAELEGL 771
Query: 778 RAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEK 837
R KSK LEDSCLL D+EKS L +E+ LVSQL+I + LKDL K ++ELE ++L L+ E+
Sbjct: 772 RIKSKILEDSCLLFDHEKSSLTSEKEMLVSQLNITHQTLKDLRKKHSELELKHLELKAER 831
Query: 838 ESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKA 897
ES LQK+EEL SL AE+++H+ VQL++ +LA E QI LQE+ +KK YE+ELD+
Sbjct: 832 ESALQKLEELLVSLYAEREEHSRIVQLNDCQLAEKELQIFVLQEDADYQKKEYEDELDRG 891
Query: 898 LDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSLV 957
+ AQ+EIF+ QK IQDL++KNFSLL ECQ+LL+ S LS++LI KLEN+N ++Q ++ SL
Sbjct: 892 VHAQMEIFVLQKCIQDLEQKNFSLLVECQRLLEASKLSDRLISKLENDNVQKQVDVNSLS 951
Query: 958 DQIKVLRVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQN 1017
++IK+LR+ L Q+L+ L+++++ CE E+DQ LL+ + GKL+E Q S + ++
Sbjct: 952 EKIKMLRIGLLQVLKTLDVNSEPWCEDVTEEDQE---LLNHIHGKLQETQNSFVTIFNES 1008
Query: 1018 HQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELR 1077
QV IENS+LVA LGQLKL+A NL TER++L +E R QS+QF+ LQ E K+ E N+EL+
Sbjct: 1009 QQVAIENSVLVAFLGQLKLKAGNLWTERDSLDKELRTQSKQFLALQAEVQKILEKNQELK 1068
Query: 1078 VEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKH 1137
+ +++R EV+ TE+ +L L +L+ Q++++++CK +EK +L+++ LDL EEK
Sbjct: 1069 LAISKREEKMEVMTTEIENLCKQLLDLKEDHQNIKEESCKTFEEKNALLRRFLDLGEEKS 1128
Query: 1138 SLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKDG 1197
LEEE C+M ETI+QSN+S I+++++ EKL + +LS++LD+L +N +LE K+++ G
Sbjct: 1129 KLEEEFCIMIHETIAQSNISLIYQNILFEKLQTLKELSQDLDRLCSVNADLENKLKIMMG 1188
Query: 1198 KLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILCS 1257
KLEDVQM+NS LK+S S NEL + V DQLNC+I NGK+LLS+KE E+ A ++ +
Sbjct: 1189 KLEDVQMENSDLKESFVVSSNELKLVQSVNDQLNCQIRNGKELLSQKENEILEAAKMFSA 1248
Query: 1258 LQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTEDYDCQIKETRCIHELNMKLEAE 1317
L +E+ EL VEDL KYDEA++I EDQ QI KL+ D D Q E C+ E+N KLEAE
Sbjct: 1249 LHDEKRELKRLVEDLKSKYDEARVILEDQASQILKLSSDKDLQNGELGCLCEVNQKLEAE 1308
Query: 1318 LGKLLEELEGTRYREESLYHELEKERKHAGLWETQATELFSELQISSVCEVLRNEKAHEL 1377
+ L +EL + REE L EL K WETQA L++ LQIS+V E L EK EL
Sbjct: 1309 MRHLHQELGEIKLREEKLNCELLKGTNEIEQWETQAATLYTRLQISAVNETLFEEKVREL 1368
Query: 1378 SRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSIRSLENHT 1437
+ ACE+LE RSN +E LKE+ LE ENG L LAA +PAV +L DSI +LE T
Sbjct: 1369 ADACEDLERRSNFKGMESEMLKERVKKLEGENGRLHGQLAAYVPAVSALNDSITALEMQT 1428
Query: 1438 L 1438
L
Sbjct: 1429 L 1429
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570592|ref|XP_003553469.1| PREDICTED: uncharacterized protein LOC100787384 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1487 bits (3849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 818/1456 (56%), Positives = 1071/1456 (73%), Gaps = 69/1456 (4%)
Query: 1 MAAVAHADSKRKYSWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEM 60
MA ++HADS+R YSWWWDSHISPKNSKWLQENLTDMD KVKQMIKLIEEDADSFARRAEM
Sbjct: 1 MATLSHADSRRMYSWWWDSHISPKNSKWLQENLTDMDSKVKQMIKLIEEDADSFARRAEM 60
Query: 61 YYKKRPELMKLVEEFYRAYRALAERYDHATGALRQAHRTMAEAFPNQVP-FALGDDSPAG 119
YYKKRPELMKLVEEFYRAYRALAERYDHATG +RQAH TMAEAFPNQVP A DDSP
Sbjct: 61 YYKKRPELMKLVEEFYRAYRALAERYDHATGVIRQAHHTMAEAFPNQVPPLAPADDSPGV 120
Query: 120 T--EADPRTPE-LAPARAIFYPDELQNDSLGLSSSHLLALKKNGAFTDDSDTVTSRRGLK 176
T E +P TPE + +RA D+LQ D+L +H A+ +NG++TD++D+ SR+GLK
Sbjct: 121 TSMETEPHTPETIHFSRAFLDSDDLQKDAL----THFHAISRNGSYTDEADSGISRKGLK 176
Query: 177 QLNDFLGSGEKVTHGKFGEGRARKGLNFHDAEENEQLQHNESYDIKARVPSESERMGKAE 236
QLND SGE V+H K AR+GLNF D EE + Q N S + +A+V ESER+ KAE
Sbjct: 177 QLNDLFMSGEPVSHAK----SARRGLNFLDTEEIKG-QDNGSQNTRAQVLPESERITKAE 231
Query: 237 MEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQ 296
EIL LK LAKLE+EKEAGLLQY+ SLERLSNLESE+SHARE+S+GL+E+A+ AEAEVQ
Sbjct: 232 TEILALKKVLAKLESEKEAGLLQYQYSLERLSNLESEMSHARENSQGLNERANKAEAEVQ 291
Query: 297 TLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKL 356
TLKEAL +L+ EREA++ QYQQCL+K+ N+E+NIS A+ D EL++RA++AE A++LK
Sbjct: 292 TLKEALTKLQAEREASLLQYQQCLEKIYNLEENISSAQKDVGELNERATRAETAAESLKQ 351
Query: 357 DLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGK 416
DLAR+EAEKEAA+V+Y + M+S LE++L+ +EE+++RIN+ A+ A+ E+E +K + K
Sbjct: 352 DLARVEAEKEAALVQYNQSLEMLSKLEERLIQAEENARRINEQANAAKDEIEGMKLEIAK 411
Query: 417 LTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERS 476
LTEEKE AL+YQQCLE IS +EHKL+ A+EE RL+ ++++G KL +E+KC LLE S
Sbjct: 412 LTEEKEDAALRYQQCLEIISSMEHKLSCAQEEVHRLNCKINDGVEKLHSSEQKCTLLETS 471
Query: 477 NQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQS 536
NQTL SEL+S+ QK GSQS+EL+EKQK+LGRLWTCIQEERLRF+EAE AFQ LQ+LHSQS
Sbjct: 472 NQTLQSELQSLAQKFGSQSEELSEKQKDLGRLWTCIQEERLRFIEAEAAFQNLQNLHSQS 531
Query: 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEI 596
Q+ELRSLA EL ++A+IL++ + Q+L++EV K KEENK LNE+ LSS+ SIKNLQDEI
Sbjct: 532 QEELRSLATELHSKAEILENTESHKQALEDEVHKSKEENKTLNEIKLSSSLSIKNLQDEI 591
Query: 597 LSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFG 656
L+LRE I KLE EV L+VD+RNALQQEIYCLK+ELN+++K+H++M+E V S L+P+ F
Sbjct: 592 LNLREIIKKLELEVGLQVDERNALQQEIYCLKDELNDVSKRHESMMEDVRSTDLDPQCFA 651
Query: 657 LSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRD 716
SVK+LQDENSKL E E + EK AL EKLEIMEKLLEKNAVLE SL L VELE R
Sbjct: 652 SSVKKLQDENSKLNERCETYKDEKEALKEKLEIMEKLLEKNAVLERSLLVLTVELESARG 711
Query: 717 KVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEG 776
KVK LEE C++LL EKSTL AEK +LFSQLQ E L+KLS++N+ L NSLF+ N+E+EG
Sbjct: 712 KVKILEETCESLLGEKSTLAAEKATLFSQLQTTVEKLEKLSEKNHLLENSLFNVNSELEG 771
Query: 777 LRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEE 836
LR KSK LEDSCLL D+EKS L +++ LVSQL+I + LKDL K ++ELE ++L L+ E
Sbjct: 772 LRIKSKILEDSCLLFDHEKSSLTSDKEMLVSQLNITHQTLKDLGKKHSELELKHLELKAE 831
Query: 837 KESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDK 896
+ES LQK+EEL SL AE+++H+ VQL++ +LA E QI LQE+ +KK +EEELD+
Sbjct: 832 RESALQKLEELLVSLYAEREEHSRIVQLNDCQLAEKELQIFVLQEDADYQKKEFEEELDR 891
Query: 897 ALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSL 956
A AQ+EIFI QK IQD ++KNFSLL E Q+LL+ S LS++L+ KLEN+N ++Q ++ SL
Sbjct: 892 ATHAQMEIFILQKCIQDSEQKNFSLLVESQRLLESSKLSDRLVSKLENDNVQKQVDVNSL 951
Query: 957 VDQIKVLRVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQ 1016
++IK+LR+ L Q L+ L+++++ C+ +E+DQ LL+ + GKL+E Q S + +
Sbjct: 952 SEKIKILRIGLLQALKTLDVNSEPRCDGIIEEDQE---LLNHIHGKLQETQNSFVTIFNE 1008
Query: 1017 NHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEEL 1076
+ QV IENS+LVA LGQLKL+AENL TER++L +E R QS+QF+ LQ E K+ E N+EL
Sbjct: 1009 SQQVAIENSVLVAFLGQLKLKAENLLTERDSLDKELRTQSKQFLALQAEVQKILEKNQEL 1068
Query: 1077 RVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEK 1136
++ +++ EV+ TE+ +L L +L+ Q++++++CK +EK SLMK+ DL EEK
Sbjct: 1069 KLTISKGEEKTEVMTTEIENLCKQLLDLKEDHQNIKEESCKTFEEKNSLMKRFRDLGEEK 1128
Query: 1137 HSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKD 1196
LEEE C+M +TI+QSNLS ++++++ EKL + +LS++LD+L +N +LEEK+++
Sbjct: 1129 SKLEEEICIMIHDTIAQSNLSLLYQNIVLEKLQALKELSKDLDRLCSVNTDLEEKLKIMM 1188
Query: 1197 GKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILC 1256
GKLEDVQM+NS LK+SL S NEL + V DQLNC+I NGK+LLS+KE E+ A ++
Sbjct: 1189 GKLEDVQMENSDLKESLIVSSNELKLVQSVNDQLNCQIRNGKELLSQKENEILEAAKMFS 1248
Query: 1257 SLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTEDYDCQIKETRCIHELNMKLEA 1316
+L +E+TEL VEDL KY A++I EDQ QI KL+ D D Q
Sbjct: 1249 TLHDEKTELQRLVEDLKSKYAGARVILEDQASQILKLSSDKDTQ---------------- 1292
Query: 1317 ELGKLLEELEGTRYREESLYHELEKERKHAGLWETQATELFSELQISSVCEVLRNEKAHE 1376
A L++ LQIS+V E L EK E
Sbjct: 1293 ------------------------------------AATLYTRLQISAVNETLFEEKVRE 1316
Query: 1377 LSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSIRSLENH 1436
L+ ACE+L+ RSN +E LKE+ N LE ENG L++HLAA +PAV +L D I SLE
Sbjct: 1317 LADACEDLDRRSNFKGMESETLKERVNKLEGENGRLRSHLAAYVPAVSALNDCITSLEMQ 1376
Query: 1437 TLLHKADNDEVKVMSI 1452
TL H A+ KV+ +
Sbjct: 1377 TLAH-ANPHNYKVLKV 1391
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357440635|ref|XP_003590595.1| Centromere protein [Medicago truncatula] gi|355479643|gb|AES60846.1| Centromere protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1432 bits (3708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 795/1452 (54%), Positives = 1061/1452 (73%), Gaps = 28/1452 (1%)
Query: 2 AAVAHADSKRKYSWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMY 61
A +HADS+R YSWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMY
Sbjct: 4 ATRSHADSRRMYSWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMY 63
Query: 62 YKKRPELMKLVEEFYRAYRALAERYDHATGALRQAHRTMAEAFPNQVPFALGDDSPAGT- 120
YKKRPELMK+VEEFYRAYRALAERYDHATG +R AHRTMAEAFPNQ+P + DD P T
Sbjct: 64 YKKRPELMKMVEEFYRAYRALAERYDHATGVIRHAHRTMAEAFPNQIPVMITDDLPMVTS 123
Query: 121 -EADPRTPELA-PARAIFYPDELQNDSLGLSSSHLLALKKNGAFTDDSDTVTSRRGLKQL 178
E +PRTPE P+R DE + D+ H + K+NGA +++ + ++ GL+QL
Sbjct: 124 METEPRTPETRHPSRTFLDSDESEKDA------HFI--KRNGADSEELHSALNKTGLRQL 175
Query: 179 NDFLGSGEKVTHGKFGEGRARKGLNFHDAEENEQLQHNESYDIKARVPSESERMGKAEME 238
ND L E H KF EG AR+GLNF + +E +N KA V SESER+ KAE E
Sbjct: 176 NDLLIPRE---HAKF-EGHARRGLNFLETQEESSELNNGGRGTKAHVLSESERVTKAEAE 231
Query: 239 ILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTL 298
I LK ALAKLE EKEAGLLQY+QSLE+LSNLE EVS A+E+S+ + E+AS AEAEVQ L
Sbjct: 232 ISALKKALAKLEDEKEAGLLQYQQSLEKLSNLELEVSSAQENSQRVDERASKAEAEVQDL 291
Query: 299 KEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDL 358
KEA+ +L+ EREA + QYQ+CL+K++++EKNIS A+ DA E ++RA++AE E +LK DL
Sbjct: 292 KEAVIKLQAEREATLLQYQECLEKITDLEKNISFAQKDAGEFNERATRAETEVDSLKQDL 351
Query: 359 ARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLT 418
R+EAEKE A+++Y++C +S LE++L SEE+ +RIN+ A+ AE+E+E LK + KL
Sbjct: 352 LRVEAEKEVALLQYKQCLETLSKLEERLKESEENVRRINQQANLAENEIEALKLEVTKLN 411
Query: 419 EEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQ 478
EEKE AL+YQQCLE IS LEHKL+ AEEE RL+S++D+ KL +E+KCLLLE SN
Sbjct: 412 EEKEDAALRYQQCLEIISSLEHKLSCAEEEVGRLNSKIDDEVEKLHSSEQKCLLLETSNH 471
Query: 479 TLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQD 538
L SEL+S+ KMGSQS+EL EKQKELG+LW+ +QEERLRF+EAETAFQTLQHLHSQSQ+
Sbjct: 472 ALQSELQSLAHKMGSQSEELNEKQKELGKLWSSLQEERLRFIEAETAFQTLQHLHSQSQE 531
Query: 539 ELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILS 598
+LR+LAA+ + +IL ++ +R QSL++EV +V EENK LNEL +SS+ SI+ LQDEIL+
Sbjct: 532 DLRALAADFHGKLEILGNVESRKQSLEDEVHRVNEENKILNELKISSSLSIQTLQDEILN 591
Query: 599 LRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLS 658
L+ETI KLE EVELR+++RNALQQEIYCLKEELN++NKKH+AM+++V S L+P+ FG S
Sbjct: 592 LKETIEKLEQEVELRLNERNALQQEIYCLKEELNDMNKKHEAMIDEVRSADLDPQCFGSS 651
Query: 659 VKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKV 718
VK+LQDENSKLKE E ++ EK+ALL KLE MEKLLEKN+VLENS+SDLN EL+ VR KV
Sbjct: 652 VKQLQDENSKLKETCEAEKDEKLALLVKLETMEKLLEKNSVLENSISDLNAELDSVRGKV 711
Query: 719 KALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLR 778
LE CQ+LL EKSTL AEK +LFSQLQ E L+KLS+ NN L NSLFD + E++ LR
Sbjct: 712 NVLEGTCQSLLVEKSTLAAEKATLFSQLQATTEKLEKLSENNNLLENSLFDVSTELDVLR 771
Query: 779 AKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKE 838
KSK LED+C LLD+EKS + +E+ LVS+L+ ++ LKDLEK ++ELE +L L+ E+E
Sbjct: 772 GKSKILEDACQLLDHEKSSISSEKEALVSELNTTQQILKDLEKQHSELELMHLELKGERE 831
Query: 839 STLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKAL 898
S+L+KVEEL SL +++++H ++L+E +A E QI L+E+ CRK+ YEEELD++L
Sbjct: 832 SSLKKVEELLVSLYSQREEHCRVLKLNEDEVANKELQIDILKEDAKCRKQEYEEELDRSL 891
Query: 899 DAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVD 958
+AQIEIFI QK IQDL+++NFSLL ECQ+LL+ S +S+K+I LE EN ++Q+++ SL D
Sbjct: 892 NAQIEIFILQKCIQDLEKRNFSLLVECQRLLEASKMSDKIISNLETENIQKQDDVDSLSD 951
Query: 959 QIKVLRVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNH 1018
+IK+LRV L+Q+L+ L+I+ D+ E +++D QTLL+ + GKLKE + S +++H
Sbjct: 952 KIKILRVGLHQVLKTLDINGDNFFEDMLDED---QTLLNHIHGKLKERKKSFDAIFKESH 1008
Query: 1019 QVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRV 1078
+ +ENS+L+ L QLK+ ENL E+ AL EE +IQS+QF LQ EF K E N+EL++
Sbjct: 1009 HLTVENSVLITFLEQLKMTVENLVIEKGALDEESKIQSKQFTALQIEFQKALEKNQELKL 1068
Query: 1079 EVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHS 1138
+++ E + E+ +L LS + ++L +++C +++EKKSL+ + DL EEK +
Sbjct: 1069 AISKGEEKMEGMTAEIVNLREELSNFEKIHRNLHEKSCTIIEEKKSLLGRFKDLSEEKGN 1128
Query: 1139 LEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGK 1198
LEEE CV+ ET QSN+S I++++ISEKL ++ L + LDKLG NN LEE++++ K
Sbjct: 1129 LEEELCVLSHETFVQSNISAIYENIISEKLQELKQLGQELDKLGSENNNLEERLKIMAHK 1188
Query: 1199 LEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILCSL 1258
LE+ +M+NS LK+ KS EL + V DQL C+I N +++L +KEK L A + +L
Sbjct: 1189 LENEEMENSHLKELFVKSNVELNLVESVNDQLTCQIRNEREMLCQKEKVLSEAAKTFHAL 1248
Query: 1259 QNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTEDYDCQIKETRCIHELNMKLEAEL 1318
E+TEL EDL +YD+AK E+Q +I L+ D D Q +E C+ E+N KLE+E+
Sbjct: 1249 HTEKTELQRTAEDLKIRYDDAKGKLEEQANRISHLSSDKDRQNEELGCLSEVNQKLESEM 1308
Query: 1319 GKLLEELEGTRYREESLYHELEKERKHAGL-----WETQATELFSELQISSVCEVLRNEK 1373
L +ELE + RE+ L +E+ H G+ WETQA LF+ELQ+S+V E L K
Sbjct: 1309 KCLHQELEEIKLREKKLSYEV-----HEGINEIEQWETQAAVLFAELQVSAVNETLLQGK 1363
Query: 1374 AHELSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSIRSL 1433
A EL+ CE+LE + S D+E QLKE + LE ENG + LAA +PA+ +L D + SL
Sbjct: 1364 ACELADTCEHLESINYSKDMEREQLKELVSKLEGENGKMCDQLAAYVPAISALNDCVTSL 1423
Query: 1434 ENHTLLHKADND 1445
E TL H +D
Sbjct: 1424 EVQTLGHPKHHD 1435
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502801|ref|XP_003520204.1| PREDICTED: uncharacterized protein LOC100782563 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1422 bits (3681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 781/1378 (56%), Positives = 1024/1378 (74%), Gaps = 18/1378 (1%)
Query: 1 MAAVAHADSKRKYSWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEM 60
MA + A+S+R YSWWWDSHISPKNSKWLQENLTDMD KVKQMIKLIEEDADSFARRAEM
Sbjct: 1 MATKSQANSRRMYSWWWDSHISPKNSKWLQENLTDMDAKVKQMIKLIEEDADSFARRAEM 60
Query: 61 YYKKRPELMKLVEEFYRAYRALAERYDHATGALRQAHRTMAEAFPNQVPFALGDDSPA-- 118
YYKKRPELMK+VEEFYRAYRALAERYDHATG +R AH+TMAEAFPNQVP L DD PA
Sbjct: 61 YYKKRPELMKMVEEFYRAYRALAERYDHATGVIRHAHKTMAEAFPNQVPMMLTDDLPAIS 120
Query: 119 GTEADPRTPELA-PARAIFYPDELQNDSLGLSSSHLLALKKNGAFTDDSDTVTSRRGLKQ 177
TE +P TPE+ P+RA PDE Q D+ S+H A+K+NG +T + D+ ++ GLKQ
Sbjct: 121 PTETEPHTPEMRHPSRAFLDPDEPQKDA----SAHFHAIKRNGGYTGEPDSPLNKTGLKQ 176
Query: 178 LNDFLGSGEKVTHGKFGEGRARKGLNFHDAEENEQLQHNESYDIKARVPSESERMGKAEM 237
LND GE+ KF AR+GLNF + +E + NE SESE + KAE
Sbjct: 177 LNDLYIPGEQENLPKF----ARRGLNFFETQE----ESNEQNSGSNNTLSESECVTKAET 228
Query: 238 EILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQT 297
EIL LK A+AKLE EKEAGLLQY+QSLE++SNL+ EVS A+E+S+ L E+AS AEAEVQ
Sbjct: 229 EILALKKAIAKLEDEKEAGLLQYQQSLEKMSNLKLEVSTAQENSRRLDERASKAEAEVQA 288
Query: 298 LKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLD 357
LKEA +L+ E EA++ QYQ+CL+K+SN+EKNIS + +A EL++RA+KAE E ++LK +
Sbjct: 289 LKEAQIKLQAESEASLLQYQECLEKISNLEKNISSLQKEAGELNERATKAETETESLKQE 348
Query: 358 LARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKL 417
LAR+EAEKEA +V+Y +C IS LE+++ +EE+++RI + AD AE E+E L+ + KL
Sbjct: 349 LARVEAEKEATLVQYNQCLETISKLEERIKEAEENARRIKEHADIAEKEIEALELQVTKL 408
Query: 418 TEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSN 477
EEKE AL YQQC+E IS LE+KL+ AEEE RL+S++ +G KL+ +E+KCLLLE SN
Sbjct: 409 NEEKEDAALHYQQCMEIISSLEYKLSCAEEEVHRLNSKIVDGVEKLQSSEQKCLLLETSN 468
Query: 478 QTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQ 537
TL SEL+S+ QK+GSQS+EL EKQ+ELGRLW CIQEERLRF+EAETAFQTLQ LHSQSQ
Sbjct: 469 HTLQSELQSLAQKVGSQSEELNEKQQELGRLWGCIQEERLRFIEAETAFQTLQQLHSQSQ 528
Query: 538 DELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEIL 597
+ELRSLA+EL ++ +IL ++ +R Q+L++EV +V EENK LNE+ +SS+ SIKNLQDEIL
Sbjct: 529 EELRSLASELNSKVEILGNVESRKQALEDEVHRVSEENKILNEVKISSSLSIKNLQDEIL 588
Query: 598 SLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGL 657
+LRETI K+E EVELR+D+RNALQQEIYCLKEELN++NKKH+AM+E+V S L+P+ FG
Sbjct: 589 NLRETIEKVEQEVELRIDERNALQQEIYCLKEELNDVNKKHEAMIEEVRSTDLDPQCFGS 648
Query: 658 SVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDK 717
SVK+LQDEN KLKE E D+ EK ALL KLE MEKLLEKN VLENSLSDLN EL+ VR K
Sbjct: 649 SVKKLQDENLKLKETCEADKGEKEALLVKLETMEKLLEKNTVLENSLSDLNAELDSVRGK 708
Query: 718 VKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGL 777
V LEE CQ+LL EKS L AEK +LFSQLQ E L+KLS+++N L NSLFD NAE+EGL
Sbjct: 709 VNVLEETCQSLLVEKSNLAAEKATLFSQLQSTTEKLEKLSEKSNLLENSLFDVNAELEGL 768
Query: 778 RAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEK 837
R KSK LED+C LD+EKS + E+ LVSQL+I + LKDLEK ++ELE ++L L+ E+
Sbjct: 769 RVKSKVLEDTCRSLDHEKSSICQEKETLVSQLNITHQTLKDLEKLHSELELKHLELKGER 828
Query: 838 ESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKA 897
ES LQKVEEL SL +E+++++ ++L+E LA E QI LQE+ C+KK YEEELD+A
Sbjct: 829 ESALQKVEELLVSLYSEREENSRVLKLNEDELAEKELQILILQEDANCKKKEYEEELDRA 888
Query: 898 LDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSLV 957
+ AQ+EIFI QK I DL++KN SLL ECQ+LL+ S +S+K+I KLE EN ++Q ++ SL
Sbjct: 889 IHAQLEIFILQKCIDDLEKKNLSLLVECQRLLEASKMSDKMISKLETENVQKQVDVNSLS 948
Query: 958 DQIKVLRVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQN 1017
++IK+LR+ L Q+L+ L+ ++ H E +E+D Q LL+ + GKL+E Q S +
Sbjct: 949 EKIKILRIGLIQVLKTLDNNSGHFGEDMLEED---QMLLNHIYGKLQERQKSFDTIFNGS 1005
Query: 1018 HQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELR 1077
Q+ IENSIL+ L QLKL+ ENL T+R+ L EEF IQS+QF+ LQ E K+ + N+EL
Sbjct: 1006 QQMAIENSILITFLEQLKLKVENLVTQRDTLDEEFNIQSKQFLALQIEVQKILQKNQELE 1065
Query: 1078 VEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKH 1137
+ +++ EV+ E +L LS+L+ + +LQ+ +CK+L+EKKSL ++ LDL EEK
Sbjct: 1066 LTISKGEERMEVMTIETDNLRKQLSDLEKSHNNLQEDSCKILEEKKSLTRRFLDLGEEKS 1125
Query: 1138 SLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKDG 1197
+LEEE CVM E I+QSNLS I++++I EKL+++ +L E+LDK NN+L+E++R+
Sbjct: 1126 NLEEEICVMIHEAIAQSNLSLIYENIIFEKLMELKELGEDLDKHCSANNDLDERLRVMMC 1185
Query: 1198 KLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILCS 1257
KLE+ +M+NS LK+S KS EL + + QL+C+I + +++L KE EL A ++
Sbjct: 1186 KLENAEMENSHLKESFVKSNVELHLVESINGQLSCQIRDEREMLHLKENELLEAAEMFHV 1245
Query: 1258 LQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTEDYDCQIKETRCIHELNMKLEAE 1317
L E+TEL VEDL KYDEA+++ E+Q QI KL+ D D Q +E C+ E+N KLE+E
Sbjct: 1246 LHTEKTELQRMVEDLKIKYDEARVMLEEQANQILKLSSDKDHQNEELLCLSEVNQKLESE 1305
Query: 1318 LGKLLEELEGTRYREESLYHELEKERKHAGLWETQATELFSELQISSVCEVLRNEKAH 1375
+G L +EL T+ RE+ L E+ K WETQA+ LF+ELQIS+V E L K +
Sbjct: 1306 MGYLRQELGETKLREKKLGDEVLKGTNEIEQWETQASTLFAELQISAVNETLFEGKVY 1363
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186478086|ref|NP_171807.2| kinase interacting (KIP1-like) protein [Arabidopsis thaliana] gi|332189405|gb|AEE27526.1| kinase interacting (KIP1-like) protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1340 bits (3469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 770/1448 (53%), Positives = 1013/1448 (69%), Gaps = 38/1448 (2%)
Query: 1 MAAVAHADSKRKYSWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEM 60
M AV + +SKR YSWWWDSHISPKNSKWLQENLTDMD KVKQMIK+IEEDADSFARRAEM
Sbjct: 1 MTAVVNGNSKR-YSWWWDSHISPKNSKWLQENLTDMDSKVKQMIKVIEEDADSFARRAEM 59
Query: 61 YYKKRPELMKLVEEFYRAYRALAERYDHATGALRQAHRTMAEAFPNQVPFALGDDSPAGT 120
YYKKRPELMKLVEEFYRAYRALAERYDHATG +R A +TMAEAFPNQ P G++SP G+
Sbjct: 60 YYKKRPELMKLVEEFYRAYRALAERYDHATGVIRHAQQTMAEAFPNQDPMMFGEESPLGS 119
Query: 121 EAD---PRTPE-LAPARAIFYPDELQNDSLGLSSSHLLALKKNGAFTDDSDTVTSRRGLK 176
D P+TP+ P RA YPD+L+ + G+SSSHL +K+N AF +D +V+S +G
Sbjct: 120 STDGFDPQTPDSYPPIRAPVYPDDLRKGAFGISSSHLSTVKRNIAFMEDPQSVSSGKG-- 177
Query: 177 QLNDFLGSGEKVTHGKFGEGRARKGLNFHDAEENEQLQHNESYDIKARVPSESERMGKAE 236
F +ARKGLNF++ + E I A+V SESER KAE
Sbjct: 178 ----------------FKTAKARKGLNFNNVDGKE---------INAKVLSESERASKAE 212
Query: 237 MEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQ 296
EI+ LK+AL+K++AEKEA L Q+ Q+LE+LSNLESEVS A+EDS+ L E+A+ AEAEV+
Sbjct: 213 AEIVALKDALSKVQAEKEASLAQFDQNLEKLSNLESEVSRAQEDSRVLIERATRAEAEVE 272
Query: 297 TLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKL 356
TL+E+L+++E E+E+++ QYQQCL ++++E IS A+ +A E+ +RA++AE E LK
Sbjct: 273 TLRESLSKVEVEKESSLLQYQQCLQNIADLEDRISLAQKEAGEVDERANRAEAETLALKQ 332
Query: 357 DLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGK 416
L E +KEAA+V+Y++C + IS LE++L +EEDS+ N+ A+ AE EVE LKQ + K
Sbjct: 333 SLVSSETDKEAALVQYQQCLKTISNLEERLHKAEEDSRLTNQRAENAEGEVESLKQKVSK 392
Query: 417 LTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERS 476
L EE EA LQYQQCL+ I+ L+ KL A+EE QRL E+++G AKLK AEEKC++LERS
Sbjct: 393 LIEENEAYELQYQQCLDTIADLKLKLFHAQEETQRLSREIEDGVAKLKFAEEKCVVLERS 452
Query: 477 NQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQS 536
NQ LHSEL+ +++K+G+QS ELTEKQKELGRLWTC+QEE LRF+EAETAFQTLQ LHSQS
Sbjct: 453 NQNLHSELDGLLEKLGNQSHELTEKQKELGRLWTCVQEENLRFMEAETAFQTLQQLHSQS 512
Query: 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEI 596
Q+EL +LA ELQNR+QILKDM RN LQEEV++ K+++K LNELNLSSA SIK+LQ+E+
Sbjct: 513 QEELSTLALELQNRSQILKDMEARNNGLQEEVQEAKDQSKSLNELNLSSAASIKSLQEEV 572
Query: 597 LSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFG 656
LRETI KLEAEVELRVDQRNALQQEIYCLKEEL+++ KKHQ+MVEQVE V L+PE+FG
Sbjct: 573 SKLRETIQKLEAEVELRVDQRNALQQEIYCLKEELSQIGKKHQSMVEQVELVGLHPESFG 632
Query: 657 LSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRD 716
SVKELQ+ENSKLKE+ ER+ EK AL+EKLE+MEKL++KN +LENS+SDLN ELE +R
Sbjct: 633 SSVKELQEENSKLKEIRERESIEKTALIEKLEMMEKLVQKNLLLENSISDLNAELETIRG 692
Query: 717 KVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEG 776
K+K LEE +L EKS L +EK+ L S+LQ EN KKLS+EN L NSLF+AN E+E
Sbjct: 693 KLKTLEEASMSLAEEKSGLHSEKDMLISRLQSATENSKKLSEENMVLENSLFNANVELEE 752
Query: 777 LRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEE 836
L++K KSLE+SC LL+++K+ L +ER +L+S +D RK ++DLEK +AEL+ + L L E
Sbjct: 753 LKSKLKSLEESCHLLNDDKTTLTSERESLLSHIDTMRKRIEDLEKEHAELKVKVLELATE 812
Query: 837 KESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDK 896
+ES+LQK+EEL SL+A+ ++ASFVQ SE+R+ GMES I LQ+E CR + Y+ ELD+
Sbjct: 813 RESSLQKIEELGVSLNAKDCEYASFVQFSESRMNGMESTIHHLQDENQCRVREYQVELDR 872
Query: 897 ALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSL 956
A DA IEI + QK +QD EK+ SL+ E Q + + S L EKL+ +LE EN +Q ++ S
Sbjct: 873 AHDAHIEIIVLQKCLQDWLEKSSSLIAENQDIKEASKLLEKLVSELEEENIGKQVQIDSS 932
Query: 957 VDQIKVLRVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQ 1016
++ IK+LR +YQ+L LEI G + +DQ + + + +L++MQ +L ++
Sbjct: 933 INCIKILRTGIYQVLMKLEIIPGIGSGDENSRDQRN---MHDILNRLEDMQTMLLSIRDE 989
Query: 1017 NHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEEL 1076
N IEN +L+ L QLK EA + TE+ L EE Q +Q + E KL +N EL
Sbjct: 990 NQHSAIENLVLIEFLRQLKSEAVGIETEKKILEEELESQCQQLSFSRDETQKLIFVNGEL 1049
Query: 1077 RVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEK 1136
+V + + E+VL E+ H + +L+ LQ N K LDEK L K L L+EEK
Sbjct: 1050 TTKVNQGVNREKVLMVEIEDFHRQVLQLRDDYTILQGDNNKTLDEKAYLTKSTLQLEEEK 1109
Query: 1137 HSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKD 1196
LE++ ++ ETI QSNL + +DVI EKL L+E+LD+L + +LEE+VR
Sbjct: 1110 CKLEDDISLLLSETIYQSNLIILLEDVILEKLSGAMKLNEDLDRLSIVKCKLEEEVRELG 1169
Query: 1197 GKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILC 1256
KL+ + N L+ LEKS EL++ L EIAN K +KEKEL A ++
Sbjct: 1170 DKLKSADIANFQLQVVLEKSNAELLSARSANVHLEHEIANVK---VQKEKELLEAMLMIS 1226
Query: 1257 SLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTEDYDCQIKETRCIHELNMKLEA 1316
+QNE++EL VE L C+Y EAK I+ED+ KQ+ +L DYD Q+K+ +E N+KLEA
Sbjct: 1227 IMQNEKSELSKAVEGLECRYKEAKAIEEDRDKQVLRLRGDYDEQVKKNSHSNEANLKLEA 1286
Query: 1317 ELGKLLEELEGTRYREESLYHELEKERKHAGLWETQATELFSELQISSVCEVLRNEKAHE 1376
+L LL ELE + +E+L EL ER LWE+Q+ LF ELQIS+V E L +E
Sbjct: 1287 DLMNLLMELEEIKVEKENLNQELFTERNEIELWESQSATLFGELQISAVHETLLEGLTNE 1346
Query: 1377 LSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSIRSLENH 1436
L AC+NLE RS D EI QLK + N LE N G + A+ LK+SI+SLE H
Sbjct: 1347 LVEACKNLESRSTLKDREIEQLKGRVNNLEDANKGQNDLMCKYAQAIFLLKESIQSLEKH 1406
Query: 1437 TLLHKADN 1444
+LH+ +N
Sbjct: 1407 AMLHEFEN 1414
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4587570|gb|AAD25801.1|AC006550_9 Strong similarity to gi|2244833 centromere protein homolog from Arabidopsis thaliana chromosome 4 contig gb|Z97337. ESTs gb|T20765 and gb|AA586277 come from this gene [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1340 bits (3468), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 774/1463 (52%), Positives = 1017/1463 (69%), Gaps = 39/1463 (2%)
Query: 1 MAAVAHADSKRKYSWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEM 60
M AV + +SKR YSWWWDSHISPKNSKWLQENLTDMD KVKQMIK+IEEDADSFARRAEM
Sbjct: 1 MTAVVNGNSKR-YSWWWDSHISPKNSKWLQENLTDMDSKVKQMIKVIEEDADSFARRAEM 59
Query: 61 YYKKRPELMKLVEEFYRAYRALAERYDHATGALRQAHRTMAEAFPNQVPFALGDDSPAGT 120
YYKKRPELMKLVEEFYRAYRALAERYDHATG +R A +TMAEAFPNQ P G++SP G+
Sbjct: 60 YYKKRPELMKLVEEFYRAYRALAERYDHATGVIRHAQQTMAEAFPNQDPMMFGEESPLGS 119
Query: 121 EAD---PRTPE-LAPARAIFYPDELQNDSLGLSSSHLLALKKNGAFTDDSDTVTSRRGLK 176
D P+TP+ P RA YPD+L+ + G+SSSHL +K+N AF +D +V+S +G
Sbjct: 120 STDGFDPQTPDSYPPIRAPVYPDDLRKGAFGISSSHLSTVKRNIAFMEDPQSVSSGKG-- 177
Query: 177 QLNDFLGSGEKVTHGKFGEGRARKGLNFHDAEENEQLQHNESYDIKARVPSESERMGKAE 236
F +ARKGLNF++ + E I A+V SESER KAE
Sbjct: 178 ----------------FKTAKARKGLNFNNVDGKE---------INAKVLSESERASKAE 212
Query: 237 MEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQ 296
EI+ LK+AL+K++AEKEA L Q+ Q+LE+LSNLESEVS A+EDS+ L E+A+ AEAEV+
Sbjct: 213 AEIVALKDALSKVQAEKEASLAQFDQNLEKLSNLESEVSRAQEDSRVLIERATRAEAEVE 272
Query: 297 TLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKL 356
TL+E+L+++E E+E+++ QYQQCL ++++E IS A+ +A E+ +RA++AE E LK
Sbjct: 273 TLRESLSKVEVEKESSLLQYQQCLQNIADLEDRISLAQKEAGEVDERANRAEAETLALKQ 332
Query: 357 DLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGK 416
L E +KEAA+V+Y++C + IS LE++L +EEDS+ N+ A+ AE EVE LKQ + K
Sbjct: 333 SLVSSETDKEAALVQYQQCLKTISNLEERLHKAEEDSRLTNQRAENAEGEVESLKQKVSK 392
Query: 417 LTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERS 476
L EE EA LQYQQCL+ I+ L+ KL A+EE QRL E+++G AKLK AEEKC++LERS
Sbjct: 393 LIEENEAYELQYQQCLDTIADLKLKLFHAQEETQRLSREIEDGVAKLKFAEEKCVVLERS 452
Query: 477 NQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQS 536
NQ LHSEL+ +++K+G+QS ELTEKQKELGRLWTC+QEE LRF+EAETAFQTLQ LHSQS
Sbjct: 453 NQNLHSELDGLLEKLGNQSHELTEKQKELGRLWTCVQEENLRFMEAETAFQTLQQLHSQS 512
Query: 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEI 596
Q+EL +LA ELQNR+QILKDM RN LQEEV++ K+++K LNELNLSSA SIK+LQ+E+
Sbjct: 513 QEELSTLALELQNRSQILKDMEARNNGLQEEVQEAKDQSKSLNELNLSSAASIKSLQEEV 572
Query: 597 LSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFG 656
LRETI KLEAEVELRVDQRNALQQEIYCLKEEL+++ KKHQ+MVEQVE V L+PE+FG
Sbjct: 573 SKLRETIQKLEAEVELRVDQRNALQQEIYCLKEELSQIGKKHQSMVEQVELVGLHPESFG 632
Query: 657 LSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRD 716
SVKELQ+ENSKLKE+ ER+ EK AL+EKLE+MEKL++KN +LENS+SDLN ELE +R
Sbjct: 633 SSVKELQEENSKLKEIRERESIEKTALIEKLEMMEKLVQKNLLLENSISDLNAELETIRG 692
Query: 717 KVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEG 776
K+K LEE +L EKS L +EK+ L S+LQ EN KKLS+EN L NSLF+AN E+E
Sbjct: 693 KLKTLEEASMSLAEEKSGLHSEKDMLISRLQSATENSKKLSEENMVLENSLFNANVELEE 752
Query: 777 LRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEE 836
L++K KSLE+SC LL+++K+ L +ER +L+S +D RK ++DLEK +AEL+ + L L E
Sbjct: 753 LKSKLKSLEESCHLLNDDKTTLTSERESLLSHIDTMRKRIEDLEKEHAELKVKVLELATE 812
Query: 837 KESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDK 896
+ES+LQK+EEL SL+A+ ++ASFVQ SE+R+ GMES I LQ+E CR + Y+ ELD+
Sbjct: 813 RESSLQKIEELGVSLNAKDCEYASFVQFSESRMNGMESTIHHLQDENQCRVREYQVELDR 872
Query: 897 ALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSL 956
A DA IEI + QK +QD EK+ SL+ E Q + + S L EKL+ +LE EN +Q ++ S
Sbjct: 873 AHDAHIEIIVLQKCLQDWLEKSSSLIAENQDIKEASKLLEKLVSELEEENIGKQVQIDSS 932
Query: 957 VDQIKVLRVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQ 1016
++ IK+LR +YQ+L LEI G + +DQ + + + +L++MQ +L ++
Sbjct: 933 INCIKILRTGIYQVLMKLEIIPGIGSGDENSRDQRN---MHDILNRLEDMQTMLLSIRDE 989
Query: 1017 NHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEEL 1076
N IEN +L+ L QLK EA + TE+ L EE Q +Q + E KL +N EL
Sbjct: 990 NQHSAIENLVLIEFLRQLKSEAVGIETEKKILEEELESQCQQLSFSRDETQKLIFVNGEL 1049
Query: 1077 RVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEK 1136
+V + + E+VL E+ H + +L+ LQ N K LDEK L K L L+EEK
Sbjct: 1050 TTKVNQGVNREKVLMVEIEDFHRQVLQLRDDYTILQGDNNKTLDEKAYLTKSTLQLEEEK 1109
Query: 1137 HSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKD 1196
LE++ ++ ETI QSNL + +DVI EKL L+E+LD+L + +LEE+VR
Sbjct: 1110 CKLEDDISLLLSETIYQSNLIILLEDVILEKLSGAMKLNEDLDRLSIVKCKLEEEVRELG 1169
Query: 1197 GKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILC 1256
KL+ + N L+ LEKS EL++ L EIAN K +KEKEL A ++
Sbjct: 1170 DKLKSADIANFQLQVVLEKSNAELLSARSANVHLEHEIANVK---VQKEKELLEAMLMIS 1226
Query: 1257 SLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTEDYDCQIKETRCIHELNMKLEA 1316
+QNE++EL VE L C+Y EAK I+ED+ KQ+ +L DYD Q+K+ +E N+KLEA
Sbjct: 1227 IMQNEKSELSKAVEGLECRYKEAKAIEEDRDKQVLRLRGDYDEQVKKNSHSNEANLKLEA 1286
Query: 1317 ELGKLLEELEGTRYREESLYHELEKERKHAGLWETQATELFSELQISSVCEVLRNEKAHE 1376
+L LL ELE + +E+L EL ER LWE+Q+ LF ELQIS+V E L +E
Sbjct: 1287 DLMNLLMELEEIKVEKENLNQELFTERNEIELWESQSATLFGELQISAVHETLLEGLTNE 1346
Query: 1377 LSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSIRSLENH 1436
L AC+NLE RS D EI QLK + N LE N G + A+ LK+SI+SLE H
Sbjct: 1347 LVEACKNLESRSTLKDREIEQLKGRVNNLEDANKGQNDLMCKYAQAIFLLKESIQSLEKH 1406
Query: 1437 TLLHKADNDEVKVMSIVQVPISY 1459
+LH+ +N V ISY
Sbjct: 1407 AMLHEFENGPATTNQSF-VGISY 1428
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848532|ref|XP_002892147.1| kinase interacting family protein [Arabidopsis lyrata subsp. lyrata] gi|297337989|gb|EFH68406.1| kinase interacting family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1333 bits (3451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 768/1449 (53%), Positives = 1017/1449 (70%), Gaps = 35/1449 (2%)
Query: 1 MAAVAHADSKRKYSWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEM 60
M A+ + +SKR YSWWWDSHISPKNSKWLQENLTDMD KVKQMIK+IEEDADSFARRAEM
Sbjct: 1 MTALVNGNSKR-YSWWWDSHISPKNSKWLQENLTDMDSKVKQMIKVIEEDADSFARRAEM 59
Query: 61 YYKKRPELMKLVEEFYRAYRALAERYDHATGALRQAHRTMAEAFPNQVPFALGDDSPAGT 120
YYKKRPELMKLVEEFYRAYRALAERYDHATG +R A +TMAEAFPNQ P G++SP +
Sbjct: 60 YYKKRPELMKLVEEFYRAYRALAERYDHATGVIRHAQQTMAEAFPNQDPMMFGEESPLAS 119
Query: 121 EAD---PRTPE-LAPARAIFYPDELQNDSLGLSSSHLLALKKNGAFTDDSDTVTSRRGLK 176
D P+TPE P RA YPD+L+ +LG+SSSHL +K+N AF +D +V+S +G
Sbjct: 120 STDDFDPQTPESYPPIRAPVYPDDLRKGTLGISSSHLSTVKRNIAFMEDPQSVSSGKG-- 177
Query: 177 QLNDFLGSGEKVTHGKFGEGRARKGLNFHDAEENEQLQHNESYDIKARVPSESERMGKAE 236
F +ARKGLNF+D + E+ A+V SESER KAE
Sbjct: 178 ----------------FKTAKARKGLNFNDVDGKER---------NAKVLSESERASKAE 212
Query: 237 MEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQ 296
EI+ LK+AL+K++AEKEA L Q+ Q+LE+LSNLESEVS A+EDS+GL E+A AEAEV+
Sbjct: 213 AEIVALKDALSKVQAEKEASLAQFDQNLEKLSNLESEVSRAQEDSRGLVERAIRAEAEVE 272
Query: 297 TLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKL 356
TL+E+L+++E E+E+++ QYQQCL ++++E IS A+ +A E+ +RA+ A+ E LK
Sbjct: 273 TLRESLSKVEVEKESSLLQYQQCLQNIADLEDRISVAQKEAGEVDERANSAKAETLALKQ 332
Query: 357 DLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGK 416
L R E +KEAA+V+Y++C + IS LE++L +EEDS+ N+ A+ AE EVE LKQ + K
Sbjct: 333 SLVRSETDKEAALVQYQQCLKTISNLEERLHKAEEDSRLTNQRAENAEGEVESLKQKVSK 392
Query: 417 LTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERS 476
L EE EA LQYQQCL+ I+ L+ KL A+EE QRL E+++G AKLK AEEKC++LERS
Sbjct: 393 LIEENEAYELQYQQCLDTIADLKLKLFHAQEETQRLSREIEDGVAKLKFAEEKCVVLERS 452
Query: 477 NQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQS 536
NQ LHSEL+ +++K+G+QS ELTEKQKE+GRLWTC+QEE LRF+EAETAFQTLQ LHSQS
Sbjct: 453 NQNLHSELDGLLEKLGNQSHELTEKQKEMGRLWTCVQEEHLRFMEAETAFQTLQQLHSQS 512
Query: 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEI 596
Q+EL +LA ELQNR+QILKDM RN LQEEV++ K++NK LNELNLSSA SIK+LQ+E+
Sbjct: 513 QEELSTLALELQNRSQILKDMEARNNVLQEEVQEAKDQNKSLNELNLSSAASIKSLQEEV 572
Query: 597 LSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFG 656
LRETI KLEAEVELRVDQRNALQQEIYCLKEEL+++ KKHQ+MVEQVE V L+ E F
Sbjct: 573 SKLRETIQKLEAEVELRVDQRNALQQEIYCLKEELSQIGKKHQSMVEQVELVGLHQEGFA 632
Query: 657 LSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRD 716
SVKELQ+ENSKLKE+ ER+ EK ALLEKLE+MEKL++KN +LENS+SDLN ELE +R
Sbjct: 633 SSVKELQEENSKLKEIKERESIEKTALLEKLEMMEKLVQKNLLLENSISDLNAELETIRG 692
Query: 717 KVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEG 776
K+K LEE C +L EKS L +EK+ L S+LQ EN KKLS+EN L N LF+ NAE+E
Sbjct: 693 KLKTLEEACMSLAEEKSGLHSEKDMLISRLQSATENSKKLSEENMVLENCLFNVNAELEE 752
Query: 777 LRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEE 836
L++K KSLE+SC LL+++KS L +ER +L+S +D RK ++DLEK +AEL+ + L L E
Sbjct: 753 LKSKLKSLEESCHLLNDDKSTLTSERESLLSHIDTMRKRIEDLEKEHAELKVKVLELATE 812
Query: 837 KESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDK 896
+ES+LQK+EEL SL+A+ ++ASFVQ SE+R+ GMES I LQ+E CR++ Y+ ELD+
Sbjct: 813 RESSLQKIEELGVSLNAKDCEYASFVQFSESRMNGMESTIHHLQDENQCREREYQVELDR 872
Query: 897 ALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSL 956
A DA IEI + QK +QD EK+ SL+ E Q + + S L EKL+ +L+ EN +Q ++ S
Sbjct: 873 AHDAHIEIIVLQKCLQDWLEKSSSLIAENQNIKEASKLLEKLVSELKEENIGKQVQIDSS 932
Query: 957 VDQIKVLRVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQ 1016
++ IK+LR +YQ+L+ L+I G + +DQ + + + +L +MQ +L+ ++
Sbjct: 933 INCIKILRTGIYQVLKKLDIIPGIGSGDENSRDQKN---MHDILNRLDDMQTMLLRIRDE 989
Query: 1017 NHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEEL 1076
N IEN +L+ L QLK EA + TE+ L EE Q +Q + + E KL +N EL
Sbjct: 990 NQHSAIENLVLIEFLRQLKSEAVGIETEKKILEEELESQCQQLLFSRDETQKLIFVNGEL 1049
Query: 1077 RVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEK 1136
+V + + E+VL E+ LH + +++ LQ N K LDEK L K L L+EEK
Sbjct: 1050 TTKVNQGVNREKVLTVEIEDLHRQVLQIRDDYTILQGDNYKTLDEKAYLTKSTLQLEEEK 1109
Query: 1137 HSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKD 1196
LEE+ ++ ETI QSNL + +DV+ EKL L+E+LD+L + +LEE++R
Sbjct: 1110 RKLEEDISLLLSETIYQSNLIILLEDVVLEKLSGAMKLNEDLDRLSIVKCKLEEELREVG 1169
Query: 1197 GKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILC 1256
KL+ + N L+ LEKS EL++ L EIAN KD L +KEKEL A ++
Sbjct: 1170 DKLKSADIANFQLQGVLEKSNAELLSAKSANVHLEHEIANVKDQLDQKEKELLEAMLMIS 1229
Query: 1257 SLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTEDYDCQIKETRCIHELNMKLEA 1316
+QNE++EL VE L C+Y EAK I+ED+ KQ+ +L DYD Q+K+ ++E N+KLEA
Sbjct: 1230 IMQNEKSELSKAVEGLECRYKEAKAIEEDKDKQVLRLRGDYDEQVKKNSHLNEANLKLEA 1289
Query: 1317 ELGKLLEELEGTRYREESLYHELEKERKHAGLWETQATELFSELQISSVCEVLRNEKAHE 1376
+L + ELE +E+L EL KER LWE+Q+ LF ELQIS+V E+L HE
Sbjct: 1290 DLMNSVIELEEINVEKENLNQELFKERNEIELWESQSATLFGELQISAVHEILLEGLTHE 1349
Query: 1377 LSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHLAASIPAVISLKDSIRSLENH 1436
L+ AC+NLE RS D EI Q K + N LE N G + A+ LK+SI+SLE H
Sbjct: 1350 LAEACKNLESRSTLKDREIEQFKGRLNNLEDANKGQNDLMCKYAQAISLLKESIQSLEKH 1409
Query: 1437 TLLHKADND 1445
+ H+ +N+
Sbjct: 1410 AMPHEFENE 1418
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT1G03080 | unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Prefoldin (InterPro-IPR009053), KIP1-like (InterPro-IPR011684); BEST Arabidopsis thaliana protein match is- kinase interacting family protein (TAIR-AT3G22790.1); Has 169162 Blast hits to 69460 proteins in 2232 species- Archae - 2114; Bacteria - 24914; Metazoa - 82448; Fungi - 11850; Plants - 6375; Viruses - 760; Other Eukaryotes - 40701 (source- NCBI BLink). (1733 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | AT1G08030 | unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (327 aa) | • | 0.821 | |||||||
 | NTMC2T6.1 | NTMC2T6.1; NTMC2T6.1; LOCATED IN- plasma membrane, vacuole; EXPRESSED IN- 23 plant structures; [...] (751 aa) | • | 0.534 | |||||||
 | SEC | SEC (secret agent); transferase, transferring glycosyl groups; Has O-linked N-acetyl glucosamin [...] (977 aa) | • | 0.460 | |||||||
 | ATHB-12 | ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12); transcription activator/ transcription factor; Enco [...] (235 aa) | • | 0.436 | |||||||
 | LACS8 | long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protei [...] (720 aa) | • | 0.419 | |||||||
 | HAB1 | HAB1 (HOMOLOGY TO ABI1); catalytic/ protein serine/threonine phosphatase; mutant has ABA hypers [...] (511 aa) | • | 0.414 | |||||||
 | CHR11 | CHR11 (CHROMATIN-REMODELING PROTEIN 11); ATP binding / DNA binding / DNA-dependent ATPase/ heli [...] (1055 aa) | • | 0.404 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1460 | |||
| pfam07765 | 74 | pfam07765, KIP1, KIP1-like protein | 2e-42 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-19 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-15 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-15 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-13 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-12 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-12 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-12 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-11 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 3e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 9e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-10 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-10 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 8e-10 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-09 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 4e-09 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 7e-09 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-08 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 2e-08 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 2e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 9e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 8e-07 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 9e-07 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 1e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-06 | |
| TIGR02680 | 1353 | TIGR02680, TIGR02680, TIGR02680 family protein | 3e-06 | |
| PLN02939 | 977 | PLN02939, PLN02939, transferase, transferring glyc | 5e-06 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 6e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-05 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 2e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-05 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 5e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-04 | |
| pfam05557 | 722 | pfam05557, MAD, Mitotic checkpoint protein | 1e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 2e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-04 | |
| PLN02939 | 977 | PLN02939, PLN02939, transferase, transferring glyc | 3e-04 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 3e-04 | |
| pfam07888 | 546 | pfam07888, CALCOCO1, Calcium binding and coiled-co | 4e-04 | |
| PRK04778 | 569 | PRK04778, PRK04778, septation ring formation regul | 4e-04 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 4e-04 | |
| COG3096 | 1480 | COG3096, MukB, Uncharacterized protein involved in | 4e-04 | |
| pfam09787 | 509 | pfam09787, Golgin_A5, Golgin subfamily A member 5 | 5e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 6e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 6e-04 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 7e-04 | |
| pfam06160 | 559 | pfam06160, EzrA, Septation ring formation regulato | 8e-04 | |
| pfam01496 | 707 | pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni | 9e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.001 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.002 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.002 | |
| TIGR04211 | 198 | TIGR04211, SH3_and_anchor, SH3 domain protein | 0.002 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 0.002 | |
| PRK10929 | 1109 | PRK10929, PRK10929, putative mechanosensitive chan | 0.002 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.003 | |
| TIGR02680 | 1353 | TIGR02680, TIGR02680, TIGR02680 family protein | 0.003 | |
| TIGR02680 | 1353 | TIGR02680, TIGR02680, TIGR02680 family protein | 0.003 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 0.003 | |
| TIGR03185 | 650 | TIGR03185, DNA_S_dndD, DNA sulfur modification pro | 0.003 |
| >gnl|CDD|116379 pfam07765, KIP1, KIP1-like protein | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 2e-42
Identities = 65/74 (87%), Positives = 71/74 (95%)
Query: 14 SWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVE 73
SWWWDSHISPKNSKWL+ENL +MD KVK+M+KLIEEDADSFA+RAEMYYKKRPEL+ LVE
Sbjct: 1 SWWWDSHISPKNSKWLEENLQEMDSKVKEMLKLIEEDADSFAKRAEMYYKKRPELIALVE 60
Query: 74 EFYRAYRALAERYD 87
EFYRAYRALAERYD
Sbjct: 61 EFYRAYRALAERYD 74
|
This is a family of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions. It has also been suggested that the protein's coiled- coils allow it to dimerise in vivo. Length = 74 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 4e-19
Identities = 188/853 (22%), Positives = 356/853 (41%), Gaps = 72/853 (8%)
Query: 322 KLSNMEKNISRAEADAVELSDRASKAEIEAQT----LKLDLARIEAEKEAAVVKYEECSR 377
KL E+N+ R E EL + K E +A+ +L E E + K +E +
Sbjct: 180 KLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRK 239
Query: 378 MISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISI 437
+ LE++L EE+ + + + ++AE E+E LK L +L EE E L + + E I
Sbjct: 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEE 299
Query: 438 LEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQE 497
LE +++ E + L +EL+ +L+ +EK L+ +++ + +E
Sbjct: 300 LEGEISLLRERLEELENELEELEERLEELKEK-----------IEALKEELEERETLLEE 348
Query: 498 LTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDM 557
L + EL + E E + + L + EL + AE++N + LK
Sbjct: 349 LEQLLAELEEA--KEELEEKLSALLEELEELFEAL-REELAELEAELAEIRNELEELKR- 404
Query: 558 GTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQR 617
+SL+E +E++ E + L E ++ LQ E+ L E + +LE ++E D+
Sbjct: 405 --EIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL 462
Query: 618 NALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDR 677
L++E+ L+EEL L K+ ++ +++ + L+ S L VY
Sbjct: 463 KELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGP-- 520
Query: 678 CEKVALLEKLEIM-EKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLV 736
VA L K++ E LE A L N L V +E KA+E + +N + L
Sbjct: 521 ---VAELIKVKEKYETALE--AALGNRLQ--AVVVENEEVAKKAIEFLKENKAGRATFLP 573
Query: 737 AEKNSLFSQLQDVNE--------NLKKLSDENNFLVNSLFDANAEVEGL-----RAKSKS 783
++ L+ +L + V + V+ L A+
Sbjct: 574 LDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLR 633
Query: 784 LEDSCLLLDN---EKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKEST 840
++ + LD E S IT ++ LK+LE+ AELE + LEEE +S
Sbjct: 634 IKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSL 693
Query: 841 LQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALD- 899
++ L+ L+ ++Q ++ L + + E+ R + EEEL++ +
Sbjct: 694 KNELRSLEDLLEELRRQLEE-LERQLEELKRELAALEEELEQLQSRLEELEEELEELEEE 752
Query: 900 ----------AQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQ 949
+ E+ ++ + LKE+ L + Q L +E E+ + + E
Sbjct: 753 LEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDAL 812
Query: 950 QEEMRSLVDQIKVLRVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQIS 1009
+ E+ SL + + L ++ +L E +E E+ + L+++ +L+E++
Sbjct: 813 ERELESLEQRRERLEQEIEELEEEIEELE--------EKLDELEEELEELEKELEELKEE 864
Query: 1010 VLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKL 1069
+ + + ++ E L +L+ E L +E L EE E+ L+ + +L
Sbjct: 865 LEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERL 924
Query: 1070 TEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKV 1129
E+ + E EE T L + L+ ++L N + ++E + + ++
Sbjct: 925 -----EVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERY 979
Query: 1130 LDLQEEKHSLEEE 1142
+L+ ++ LEE
Sbjct: 980 EELKSQREDLEEA 992
|
Length = 1163 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-15
Identities = 171/836 (20%), Positives = 344/836 (41%), Gaps = 88/836 (10%)
Query: 299 KEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAV------ELSDRASKAEIEAQ 352
KE +LE RE R D L+ +E+ + E A EL + E+
Sbjct: 175 KETERKLERTRENLDRLE----DILNELERQLKSLERQAEKAERYKELKAELRELELALL 230
Query: 353 TLKLD-----LARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEV 407
L+L+ L ++ E + A + EE + + LE+KL + + + ++ + E+
Sbjct: 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290
Query: 408 ERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAE 467
L + +L ++K+ L + + LE +L E + L EL KL+ +
Sbjct: 291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
Query: 468 EKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQ 527
E+ LE + L +ELE + ++ ++L + ++ +L I E +
Sbjct: 351 EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE 410
Query: 528 TLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAE 587
L+ + Q E+ L +L+ LK++ + L+EE+E+++EE + L E E
Sbjct: 411 RLEDRRERLQQEIEELLKKLEEAE--LKELQAELEELEEELEELQEELERLEEALEELRE 468
Query: 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVES 647
++ + + + + +L+A ++ + L+ +K L + + E
Sbjct: 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSEL 528
Query: 648 VSLNPENFGLSVKEL----------QDENSKLKEVY--ERDRCEKVALLEKLEIMEKLLE 695
+S+ E + +++ ++ N+ K + +++ +V L I ++
Sbjct: 529 ISV-DEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQ 587
Query: 696 KN--AVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENL 753
N +L+N L V + V+ K L + LL LV + L + E
Sbjct: 588 GNDREILKNIEGFLGVAKDLVKFDPK-LRKALSYLLG--GVLVVD------DLDNALELA 638
Query: 754 KKLSDENNFLV--------------------NSLFDANAEVEGLRAKSKSLEDSCLLLDN 793
KKL + +S+ + E+E L K + LE+ L+
Sbjct: 639 KKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEK 698
Query: 794 EKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQF---S 850
+ L E L +L+ RK L++L + + L LE E E +++ +L
Sbjct: 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
Query: 851 LDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKY 910
L+AE ++ ++ +E LA E++I L+ + + +EEL KAL ++ +
Sbjct: 759 LEAEIEELEERLEEAEEELAEAEAEIEELEA----QIEQLKEEL-KALREALDEL--RAE 811
Query: 911 IQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQL 970
+ L E+ +L + L + + +E+ + LE + E E++ SL +I+ +L +L
Sbjct: 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE----ELEEL 867
Query: 971 LEILEIDADHGCETKMEQDQ---SHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSIL 1027
+E LE + + + ++ ++ L++++ +L+E++ S L + + L
Sbjct: 868 IEELESELEALLNERASLEEALALLRSELEELSEELRELE-SKRSELRRELEE------L 920
Query: 1028 VALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAER 1083
L QL+L E L + L E E++ + E L E+ E R
Sbjct: 921 REKLAQLELRLEGLEVRIDNLQERLS---EEYSLTLEEAEALENKIEDDEEEARRR 973
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-15
Identities = 164/780 (21%), Positives = 322/780 (41%), Gaps = 54/780 (6%)
Query: 383 EDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKL 442
E KL + E+ R+ + +E+ER L L + E A +Y++ + LE L
Sbjct: 178 ERKLERTRENLDRLEDIL----NELER---QLKSLERQAEK-AERYKELKAELRELELAL 229
Query: 443 ARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQ 502
+ L EL+ +LK AEE+ L Q L +LE + ++ +E+ E Q
Sbjct: 230 LVLR--LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ 287
Query: 503 KELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQ 562
KEL L I + L+ + + +L L ++L A+ L ++ + +
Sbjct: 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347
Query: 563 SLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQ 622
L+EE+E ++ E + L ++ L++++ +LR + +LE Q +L
Sbjct: 348 ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL-------QIASLNN 400
Query: 623 EIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVA 682
EI L+ L L + + + +++E + E +KELQ E +L+E E + E
Sbjct: 401 EIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELER 458
Query: 683 LLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNS- 741
L E LE + + LE+ E +L EL ++ ++ +LE + +NL + A +
Sbjct: 459 LEEALEELREELEEA---EQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQ 515
Query: 742 --------LFSQLQDVNENLKKL------SDENNFLVNSLFDANAEVEGLRAKSKSLEDS 787
+ S+L V+E + +V +L A + L+
Sbjct: 516 SGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTF 575
Query: 788 CLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEEL 847
L + + + ++ ++ KDL K +L L + V++L
Sbjct: 576 LPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYL----LGGVLVVDDL 631
Query: 848 QFSLDAEKQ--QHASFVQLSETRLA--GMESQISFLQEEGLCRKKAYEEELDKALDAQIE 903
+L+ K+ V L + G+ + S + ++ EEL++ ++ E
Sbjct: 632 DNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEE 691
Query: 904 -IFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKV 962
I +K + +L+++ L E ++L +E + I L + + E+ L ++I
Sbjct: 692 KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
Query: 963 LRVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVI 1022
L +L +L +E E+ + + L + +++E++ + + E+ +
Sbjct: 752 LSKELTELEAEIEELE--------ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803
Query: 1023 ENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAE 1082
L A L L EA NL +L + L+ + +L+E E L E+ E
Sbjct: 804 ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863
Query: 1083 RNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEE 1142
E L++E+ +L + L+ A L+ + ++ +E + L K +L+ E L E+
Sbjct: 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 1e-13
Identities = 92/365 (25%), Positives = 161/365 (44%), Gaps = 21/365 (5%)
Query: 238 EILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQT 297
L K L +LE E Q + E L +L++E+ + + L Q E +++
Sbjct: 661 SSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEE 720
Query: 298 LKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLD 357
LK LA LE E E Q +L +E+ + E + EL +R + E E ++L+
Sbjct: 721 LKRELAALEEELE-------QLQSRLEELEEELEELEEELEELQERLEELEEELESLEEA 773
Query: 358 LARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKL 417
LA+++ E E K + + LE++L +E + + + E ERL+Q + +L
Sbjct: 774 LAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEEL 833
Query: 418 TEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSN 477
EE E L + + E + LE +L +EE + L +E + +LK EE+ LE
Sbjct: 834 EEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL 893
Query: 478 QTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQS- 536
+ L SEL + +++ + L E + +L RL VE + L+ + +
Sbjct: 894 RELESELAELKEEIEKLRERLEELEAKLERL----------EVELPELEEELEEEYEDTL 943
Query: 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEI 596
+ EL L+ ++ +G N EE E+V+E + L E+ + L + I
Sbjct: 944 ETELEREIERLEEE---IEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVI 1000
Query: 597 LSLRE 601
L +
Sbjct: 1001 EELDK 1005
|
Length = 1163 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 2e-12
Identities = 89/360 (24%), Positives = 176/360 (48%), Gaps = 30/360 (8%)
Query: 493 SQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQ 552
+Q +EL E ++EL L +++ + ++L+ L + + +L L +L+ +
Sbjct: 664 AQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKR 723
Query: 553 ILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVEL 612
L + + LQ +E+++EE + L E E ++ L++E+ SL E + KL+ E+E
Sbjct: 724 ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783
Query: 613 RVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEV 672
++R ALQ+E+ L+EEL E ++ A+ ++ES+ E ++EL++E +L+E
Sbjct: 784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843
Query: 673 YERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEK 732
+ E L ++LE +++ LE+ LE +L EL+ + ++ + LEE
Sbjct: 844 LDELEEELEELEKELEELKEELEE---LEAEKEELEDELKELEEEKEELEE--------- 891
Query: 733 STLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLD 792
+L+++ L +L +E L L + A++E L + LE+ L +
Sbjct: 892 ------------ELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEE--ELEE 937
Query: 793 NEKSCLITERVNLVSQLDIARKGLKDL----EKSYAELEGRYLGLEEEKESTLQKVEELQ 848
+ L TE + +L+ + L + + Y E+E RY L+ ++E + E+L
Sbjct: 938 EYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLL 997
|
Length = 1163 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-12
Identities = 79/390 (20%), Positives = 174/390 (44%), Gaps = 29/390 (7%)
Query: 381 ALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEH 440
A + +L EE+ + +K E E++ LK L L + E L Q ++ + L+
Sbjct: 664 AQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKR 723
Query: 441 KLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTE 500
+LA EEE ++L + + LE + L ELE + +++ +EL
Sbjct: 724 ELAALEEELEQL--------------QSRLEELEEELEELEEELEELQERLEELEEELES 769
Query: 501 KQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTR 560
++ L +L I+E + + + L+ +++ L +L EL++ Q + +
Sbjct: 770 LEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQE 829
Query: 561 NQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNAL 620
+ L+EE+E+++E+ L E + ++ L++E+ L +LE E++ +++ L
Sbjct: 830 IEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEEL 889
Query: 621 QQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEK 680
++E+ L+ EL EL ++ + + E++E + +L+ +L E+ E E
Sbjct: 890 EEELRELESELAELKEEIEKLRERLEEL----------EAKLERLEVELPELEEELEEE- 938
Query: 681 VALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKN 740
+ + +L + LE + L ++ + +EE + L +++ L K
Sbjct: 939 ----YEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKE 994
Query: 741 SLFSQLQDVNENLKKLSDENNFLVNSLFDA 770
L ++++++ ++ E +N F
Sbjct: 995 KLLEVIEELDKEKRERFKETFDKINENFSE 1024
|
Length = 1163 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 4e-12
Identities = 81/367 (22%), Positives = 146/367 (39%), Gaps = 51/367 (13%)
Query: 271 ESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNI 330
+ + A E+ + + E + + ++ L RL ERE R YQ L +
Sbjct: 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER-YQALLKEKR------ 221
Query: 331 SRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSE 390
E + EL E + + ++ LA +E E E + E + + +E L E
Sbjct: 222 ---EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLL---E 275
Query: 391 EDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQ 450
E +K+I D E E R+K+ +G+L E +I+ E +L AEE
Sbjct: 276 ELNKKIK---DLGEEEQLRVKEKIGELEAEIA-------SLERSIAEKERELEDAEERLA 325
Query: 451 RLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWT 510
+L +E+D A+++ E E+E ++ ++E E ++EL L
Sbjct: 326 KLEAEIDKLLAEIEELER--------------EIEEERKRRDKLTEEYAELKEELEDLRA 371
Query: 511 CIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEK 570
++E + F + +++L L E+ + L + Q L EE+
Sbjct: 372 ELEEV-------DKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAD 424
Query: 571 VKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEE 630
+ G+ I L++E I K E ++E + +QE+Y LKEE
Sbjct: 425 LNAAIAGIE-------AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE 477
Query: 631 LNELNKK 637
+ + K+
Sbjct: 478 YDRVEKE 484
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-11
Identities = 84/366 (22%), Positives = 165/366 (45%), Gaps = 15/366 (4%)
Query: 359 ARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLT 418
+R + A + +E ++ LE +L EE+ K + E +E L++ L +L
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715
Query: 419 EEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQ 478
+ E L + E + L+ +L EEE + L EL+ +L+ EE+ LE +
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775
Query: 479 TLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQD 538
L E+E + +K + +EL E ++E ++E R E ++L+ + +
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEE-------LEEAERRLDALERELESLEQRRERLEQ 828
Query: 539 ELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILS 598
E+ L E++ + L ++ + L++E+E++KEE + L + +K L++E
Sbjct: 829 EIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEE 888
Query: 599 LRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLS 658
L E + +LE+E L++EI L+E L EL K + + ++ + E
Sbjct: 889 LEEELRELESE-------LAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYED 941
Query: 659 VKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKV 718
E + E + E + V L +E E++ E+ L++ DL E + + +
Sbjct: 942 TLETELEREIERLEEEIEALGPVNLR-AIEEYEEVEERYEELKSQREDLEEAKEKLLEVI 1000
Query: 719 KALEEV 724
+ L++
Sbjct: 1001 EELDKE 1006
|
Length = 1163 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-11
Identities = 76/380 (20%), Positives = 152/380 (40%), Gaps = 27/380 (7%)
Query: 234 KAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEA 293
+ E +I L+ +A+LE + + E L L E+ L + + EA
Sbjct: 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
Query: 294 EVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQT 353
EV+ L+E +A+L E + ++ ++L E+ ++ AEA+ EL + + + E +
Sbjct: 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
Query: 354 LKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQA 413
L+ L + AE + + +LE ++ +E + + + ++ ++E L
Sbjct: 801 LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE 860
Query: 414 LGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLL 473
+ +L E E L + + L + LE LA E + L EL +K + L
Sbjct: 861 IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920
Query: 474 ERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLH 533
L LE + ++ + + L+E E + + L
Sbjct: 921 REKLAQLELRLEGLEVRIDNLQERLSE--------------------EYSLTLEEAEALE 960
Query: 534 SQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQ 593
++ +D+ L+ +K++G N + EE E++KE L ++L
Sbjct: 961 NKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLT-------AQKEDLT 1013
Query: 594 DEILSLRETIGKLEAEVELR 613
+ +L E I +++ E R
Sbjct: 1014 EAKETLEEAIEEIDREARER 1033
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-11
Identities = 70/290 (24%), Positives = 124/290 (42%), Gaps = 10/290 (3%)
Query: 248 KLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLET 307
E E L + ++ + L LE E+S E+ + L E+ AE E++ LK L L
Sbjct: 222 LRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELRE 281
Query: 308 EREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEA 367
E E + + +++ +E IS L +R + E E + L+ L ++ + EA
Sbjct: 282 ELEELQEELLELKEEIEELEGEISL-------LRERLEELENELEELEERLEELKEKIEA 334
Query: 368 AVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQ 427
+ EE ++ LE L EE + + + E+E L +AL + E EA +
Sbjct: 335 LKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAE 394
Query: 428 YQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487
+ + L+ ++ EE +RL L++ +LK E + L+ + L+ ELE +
Sbjct: 395 IR---NELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEEL 451
Query: 488 VQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQ 537
+++ L E ++EL L +Q E L+ SQ
Sbjct: 452 EEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQ 501
|
Length = 1163 |
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-11
Identities = 109/506 (21%), Positives = 208/506 (41%), Gaps = 32/506 (6%)
Query: 265 ERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLS 324
ERL+ LESE++ E+ + EQ A E L E ER + + ++ L
Sbjct: 206 ERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHE-ERREELETLEAEIEDL- 263
Query: 325 NMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARI-------EAEKEAAVVKYEECSR 377
+ I+ E + EL++ + L+ + + +A+ EA + EE
Sbjct: 264 --RETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELED 321
Query: 378 MISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISI 437
L D+L ++ N+ A+ + + L++ +L EE L + ++ EA+
Sbjct: 322 RDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVED 381
Query: 438 LEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQE 497
++ EEE + L + L AE+ L L + + + +
Sbjct: 382 RREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441
Query: 498 LTEKQK--ELGRLWTCIQE-ERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQIL 554
+ E + E G+ C Q E VE + ++L E++ R +
Sbjct: 442 VEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA 501
Query: 555 KDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRV 614
+D+ ++ +E+++E + L EL E+I+ ++ LRE +LEAE E +
Sbjct: 502 EDL----VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR 557
Query: 615 DQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYE 674
+ ++E +EE+ ELN K + E++ES+ ++ L + ++ E
Sbjct: 558 EAAAEAEEEAEEAREEVAELNSKLAELKERIESLE--------RIRTLLAAIADAEDEIE 609
Query: 675 RDRCEKVALLEK-LEIMEKLLEKN---AVLENSLSDLNVELEGVRDKVKALEEVCQNLLA 730
R R ++ AL E E E+L EK LE + + E R+ + EE + +
Sbjct: 610 RLREKREALAELNDERRERLAEKRERKRELEAEFDEARI--EEAREDKERAEEYLEQVEE 667
Query: 731 EKSTLVAEKNSLFSQLQDVNENLKKL 756
+ L E++ L +++ V L++L
Sbjct: 668 KLDELREERDDLQAEIGAVENELEEL 693
|
Length = 880 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-11
Identities = 78/317 (24%), Positives = 144/317 (45%), Gaps = 3/317 (0%)
Query: 207 AEENEQLQHNESYDIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLER 266
E+ + + +++ ++ + E E+ L++ L +LE E E + + ER
Sbjct: 700 LEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQER 759
Query: 267 LSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNM 326
L LE E+ E L E+ E + Q L+E L LE E E R+ +L ++
Sbjct: 760 LEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESL 819
Query: 327 EKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKL 386
E+ R E + EL + + E + L+ +L +E E E + EE LED+L
Sbjct: 820 EQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDEL 879
Query: 387 LHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAE 446
EE+ + + + + ESE+ LK+ + KL E E L + ++ + LE +L
Sbjct: 880 KELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEY 939
Query: 447 EEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELG 506
E+ L +EL+ +L+ E + + E+E +++ SQ ++L E +++L
Sbjct: 940 EDT--LETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLL 997
Query: 507 RLWTCIQEERL-RFVEA 522
+ + +E+ RF E
Sbjct: 998 EVIEELDKEKRERFKET 1014
|
Length = 1163 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 7e-11
Identities = 66/337 (19%), Positives = 137/337 (40%), Gaps = 48/337 (14%)
Query: 250 EAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETER 309
E E +L+ + E L L+ E+ A E+ + L+ + E +++ L+ ++ LE E
Sbjct: 224 ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI 283
Query: 310 EANIRQYQQCLDKLSNMEKNI-------SRAEADAVELSDRASKAEIEAQTLKLDLARIE 362
E ++ +++S +E+ + E EL + + E + L +LA +E
Sbjct: 284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELE 343
Query: 363 AEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKE 422
+ E + E + LE +L E+ + ++ E ++E L+ + +L +
Sbjct: 344 EKLEELKEELESLEAELEELEAEL----EELESRL---EELEEQLETLRSKVAQLELQIA 396
Query: 423 ALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHS 482
+L + ++ + LE + R ++E + L +L+ A+LK + + LE + L
Sbjct: 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQE 454
Query: 483 ELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRS 542
ELE + + + +EL E ++ L D
Sbjct: 455 ELERLEEALEELREELEEAEQAL--------------------------------DAAER 482
Query: 543 LAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLN 579
A+LQ R L+ + + E V+ + + GL+
Sbjct: 483 ELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 9e-11
Identities = 74/335 (22%), Positives = 141/335 (42%), Gaps = 10/335 (2%)
Query: 247 AKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLE 306
+K + KE + ++ E L LE + + + L QA AE Q LK L LE
Sbjct: 168 SKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAE-RYQELKAELRELE 226
Query: 307 -----TEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARI 361
+ + ++ ++ ++LS +E+ + + + E + + E + L+ +L +
Sbjct: 227 LALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286
Query: 362 EAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEK 421
+ E + EE IS L ++L E + + + + ++ + ++E LK+ L +
Sbjct: 287 QEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLL 346
Query: 422 EALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLH 481
E L + EA LE KL+ EE + L L A+L+ + +
Sbjct: 347 EELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREI 406
Query: 482 SELESMVQKMGSQSQELTEKQKEL----GRLWTCIQEERLRFVEAETAFQTLQHLHSQSQ 537
LE ++++ + ++L E+ KEL L T ++E E E + L+ + +
Sbjct: 407 ESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELE 466
Query: 538 DELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVK 572
EL L ELQ + L + R L+ E +
Sbjct: 467 RELAELQEELQRLEKELSSLEARLDRLEAEQRASQ 501
|
Length = 1163 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-10
Identities = 83/377 (22%), Positives = 158/377 (41%), Gaps = 30/377 (7%)
Query: 486 SMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAA 545
+ + + E+++E+ L I+E + E E A L+ + ++EL L
Sbjct: 660 VITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRK 719
Query: 546 ELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGK 605
EL+ ++ + + L+ EVE+++E L++ I+ L++ + E + +
Sbjct: 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
Query: 606 LEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDE 665
EAE+E Q L++E+ L+E L+EL + + E+ ++ E+ + +
Sbjct: 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839
Query: 666 NSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVC 725
L+E + L E +E + +E+ LE + +L ELE + ++ +LEE
Sbjct: 840 LEDLEE-------QIEELSEDIESLAAEIEE---LEELIEELESELEALLNERASLEEAL 889
Query: 726 QNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLE 785
L +E L E L S+ ++ L++L ++ L L EV + + E
Sbjct: 890 ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL--EGLEVRIDNLQERLSE 947
Query: 786 DSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKS--------------YAELEGRYL 831
+ L L+ + + AR+ LK LE Y EL+ RY
Sbjct: 948 EYSLTLEE----AEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYD 1003
Query: 832 GLEEEKESTLQKVEELQ 848
L +KE + E L+
Sbjct: 1004 FLTAQKEDLTEAKETLE 1020
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-10
Identities = 78/366 (21%), Positives = 163/366 (44%), Gaps = 12/366 (3%)
Query: 396 INKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSE 455
I + K S + ++ + +L E+ E L + + +A++ L +L EEE ++L E
Sbjct: 661 ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE 720
Query: 456 LDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEE 515
L+ ++ + LE + L + + +++ E+ E ++ L + E
Sbjct: 721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780
Query: 516 RLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEEN 575
E E + L+ ++ L L AEL + ++ R +SL+ + +
Sbjct: 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840
Query: 576 KGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELN 635
+ L E +E I++L EI L E I +LE+E+E +++R +L++ + L+ EL EL+
Sbjct: 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
Query: 636 KKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLE-----IM 690
++ + ++ES ++EL+++ ++L+ E L E+L +
Sbjct: 901 EE----LRELESKRSELRR---ELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTL 953
Query: 691 EKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVN 750
E+ +E+ + L+ + +K+K L V + E L + L +Q +D+
Sbjct: 954 EEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLT 1013
Query: 751 ENLKKL 756
E + L
Sbjct: 1014 EAKETL 1019
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-10
Identities = 67/279 (24%), Positives = 127/279 (45%), Gaps = 9/279 (3%)
Query: 220 DIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHARE 279
+K + S + + + ++ L+ L +L+ E A + Q RL LE E+ E
Sbjct: 692 SLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE 751
Query: 280 DSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVE 339
+ + L E+ E E+++L+EALA+L+ E E + Q ++L +E+ + AE
Sbjct: 752 ELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDA 811
Query: 340 LSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKV 399
L E + L+ ++ +E E E K +E + LE +L +E+ + +
Sbjct: 812 LERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAE 871
Query: 400 ADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNG 459
++ E E++ L++ +L EE L + + E I L +L E + +RL EL
Sbjct: 872 KEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPEL 931
Query: 460 FAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQEL 498
+L+ E TL +ELE ++++ + + L
Sbjct: 932 EEELEEEYE---------DTLETELEREIERLEEEIEAL 961
|
Length = 1163 |
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 8e-10
Identities = 108/509 (21%), Positives = 201/509 (39%), Gaps = 68/509 (13%)
Query: 238 EILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQT 297
E+ TL+ + L + + E + +L + E+ L +A + +A+ +
Sbjct: 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEA 311
Query: 298 LKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLD 357
++ LE E + ++C + DA +L +RA + EA L
Sbjct: 312 VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAEL--- 368
Query: 358 LARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKL 417
E+E E A E+ I LE+++ ++ LG
Sbjct: 369 ----ESELEEAREAVEDRREEIEELEEEI--------------EELRERFGDAPVDLGNA 410
Query: 418 TEEKEALALQYQQCLEAISILEHKLARAE---EEAQRLHSELDNGFA-----KLKGAEEK 469
+ E L + + E + LE L A EEA+ L L+ G ++G+
Sbjct: 411 EDFLEELREERDELREREAELEATLRTARERVEEAEAL---LEAGKCPECGQPVEGSPHV 467
Query: 470 CLLLERSNQ--TLHSELESM------VQKMGSQSQELTEKQKELGRLWTCIQ--EERLRF 519
+ E + L +ELE + V++ ++++L E + + RL + EE +
Sbjct: 468 ETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAE 527
Query: 520 VEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLN 579
+ + +ELR AAEL+ A+ ++ +EE E+ +EE LN
Sbjct: 528 RRETIEEKRER------AEELRERAAELEAEAEEKRE---AAAEAEEEAEEAREEVAELN 578
Query: 580 ELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQ 639
E I++L + I +L I E E+E ++R AL + +E L E ++ +
Sbjct: 579 SKLAELKERIESL-ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKR 637
Query: 640 AMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAV 699
+ + + ++E +++ + +E Y EK L E E + L +
Sbjct: 638 ELEAEFD---------EARIEEAREDKERAEE-YLEQVEEK--LDELREERDDLQAEIGA 685
Query: 700 LENSLSDLNVELEGVRDKVKALEEVCQNL 728
+EN L ELE +R++ +ALE + L
Sbjct: 686 VENELE----ELEELRERREALENRVEAL 710
|
Length = 880 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 4e-09
Identities = 114/588 (19%), Positives = 232/588 (39%), Gaps = 25/588 (4%)
Query: 203 NFHDAEENEQLQHNESYDIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQ 262
E + + E + K R+ R+ + E L + E E L + +
Sbjct: 229 ELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEE 288
Query: 263 SLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDK 322
+ERL LE E+ E+ +GL E ++ LK RLE E + + +
Sbjct: 289 KIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEEL 348
Query: 323 LSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISAL 382
+ E EL +R + E E + L ++E + + E S + +
Sbjct: 349 AEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEI 408
Query: 383 EDKLLHSEEDSKRINKVADKAESEVERLKQAL-GKLTEEKEALALQYQQCLEAISILEHK 441
+++L E++ + + + ++ E E+++L++ + ++E L + E
Sbjct: 409 QEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELP 468
Query: 442 LARAEEEAQRLHSELDNGFAKLKGAEEKCLLLER------SNQTLHSELESMVQKMGSQS 495
+E + EL+ +L +E+ L E + L EL +++ +
Sbjct: 469 EEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALK 528
Query: 496 QELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRA---- 551
+EL EK ++L L E L ++ + Q L+ Q +D L+ L L+
Sbjct: 529 EELEEKLEKLENL-----LEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRT 583
Query: 552 --QILKDMGTRNQSLQEEVEKVKEENKGLNEL-----NLSSAESIKNLQDEILSLRETIG 604
+ L+++ R + L++++++++E L EL + ++ ++E+ S E +
Sbjct: 584 RKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLN 643
Query: 605 KLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQD 664
EL L++++ L+ E+ ++ + EQ+E E +++L++
Sbjct: 644 LQAELEELLQAALEELEEKVEELEAEIRRELQRIE-NEEQLEEKLEELEQLEEELEQLRE 702
Query: 665 ENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEV 724
E +L + L + +E+L ++ LE +L L EL K ++
Sbjct: 703 ELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLE-ELREKLGKAGLRADI 761
Query: 725 CQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANA 772
+NLLA+ E S S + L D N LV ++D
Sbjct: 762 LRNLLAQIEAEANEILSKLSLNRYDLRRLTIRKDGNGGLVVVVYDGGE 809
|
Length = 908 |
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-09
Identities = 111/607 (18%), Positives = 225/607 (37%), Gaps = 82/607 (13%)
Query: 229 SERMGKAEMEILTLKNALAKLEAEKE-----------AGLLQYRQSLERLSNLESEVSHA 277
E + E+ LA +E E A + Q + L++L ++ SE+
Sbjct: 305 KEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLDQLPSIRSELEEV 364
Query: 278 REDSKGLSEQASIAEAEVQTLKEAL------------ARLETEREANIRQYQQCLDKLS- 324
L+ + + + + LK+ + RL RE RQ + L
Sbjct: 365 EARLDALTGKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEEDLQA 424
Query: 325 -------NMEKNISRAEADAVELSDRASKAEIEAQT------LKLDLARIEAEKEAAVVK 371
+E + EL R + + + L + E A +
Sbjct: 425 LESQLRQQLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEELEQLEINDEALEKAQEE 484
Query: 372 YEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEE--KEALALQYQ 429
E+ + L+ +L + + +AE + +L+QAL +L + +A +L +
Sbjct: 485 QEQAEANVEQLQSELRQLRKRRDEALEALQRAERRLLQLRQALDELELQLSPQAGSLLHF 544
Query: 430 QCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLL------LER-------- 475
EA E + + ++LD +L + L L+R
Sbjct: 545 LRNEA-PGWEESIGKVISPELLERTDLD---PQLVEGSDSDTLYGVSLDLQRLDVPDYAA 600
Query: 476 SNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQ 535
+ L L+ + + S + + +++L + ++E++ EA TA + + +
Sbjct: 601 NETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQR 660
Query: 536 SQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDE 595
Q+E +SL +L+ + + R Q + ++ ++ + L +L ++ L+D+
Sbjct: 661 LQNEQQSLKDKLE---LAIAE---RKQQAETQLRQLDAQ---LKQLLEQQQAFLEALKDD 711
Query: 596 ILSLR-ETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQ-AMVEQVESVSLNPE 653
LR E + K + +Q L I + + K+ + ++ S+ ++P
Sbjct: 712 FRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDPN 771
Query: 654 NFGLSVKELQDENSKLKEVYER--DRCEKVA-----LLEKLEIMEKLLEKNAVLENSLSD 706
VKEL+ + +L+ ER R +V + E + L E+ L L +
Sbjct: 772 T----VKELKRQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRE 827
Query: 707 LNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNS 766
L E ++ ++ L + + + L E+ +L QL ++E L+ L DE L
Sbjct: 828 LESSAEELQQELTRLIKDTKLRRKK---LEQERKALEKQLDQLDELLRGLRDEMRQLAEL 884
Query: 767 LFDANAE 773
ANA
Sbjct: 885 KEPANAN 891
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 7e-09
Identities = 131/586 (22%), Positives = 249/586 (42%), Gaps = 33/586 (5%)
Query: 265 ERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETER-EANIRQYQQCLDKL 323
++ LE ++S ED + L E E++ L+E E E E I ++ L +L
Sbjct: 185 AKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAEL 244
Query: 324 SNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALE 383
++ + +A +E+ +A + +L R+ E E + + EE R I LE
Sbjct: 245 EEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELE 304
Query: 384 DKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLA 443
++L + + ++ +K +S ERL++ KL + + L ++ E +LE +L
Sbjct: 305 EELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLK 364
Query: 444 RAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQK 503
EE + L EL+ +LK EE L+ L + LE + +++ +EL E ++
Sbjct: 365 ELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELER 424
Query: 504 ELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGT-RNQ 562
EL L EE ++ +E + + + AEL + G +
Sbjct: 425 ELEEL-----EEEIKKLEEQ----------INQLESKELMIAELAGAGEKCPVCGQELPE 469
Query: 563 SLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQ 622
++E+ ++ E E LS + L++EI E +L E ++ +
Sbjct: 470 EHEKELLELYELELEELEEELSREKEEAELREEI---EELEKELRELEEELIELLELEEA 526
Query: 623 EIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVA 682
L+E+L +L + + E E + L + +++L+D +LKE+ E R
Sbjct: 527 LKEELEEKLEKLENLLEELEELKEKLQL--QQLKEELRQLEDRLQELKELLEELR----L 580
Query: 683 LLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSL 742
L + E +E+L E+ L+ L +L L + + +++LE E++ E
Sbjct: 581 LRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELE 640
Query: 743 FSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITER 802
LQ E L + + E L + + AE+ + ++ E L+ + L E
Sbjct: 641 KLNLQAELEELLQAALEE--LEEKVEELEAEIRRELQRIENEEQLEEKLEELEQ-LEEEL 697
Query: 803 VNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQ 848
L +L+ K L ++E+ ELE R + E E +++E+L+
Sbjct: 698 EQLREELEELLKKLGEIEQLIEELESR----KAELEELKKELEKLE 739
|
Length = 908 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-08
Identities = 65/324 (20%), Positives = 138/324 (42%), Gaps = 13/324 (4%)
Query: 534 SQSQDELRSLAAELQNRAQIL---KDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIK 590
++ + L + E + + + L ++ R Q+L +E + + L E + +
Sbjct: 183 EENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYEL-LKEKE-ALERQKE 240
Query: 591 NLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMV-EQVESVS 649
++ ++ SL E + KL E+ + ++Q + L +++ +L ++ Q V E++ +
Sbjct: 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELE 300
Query: 650 LNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAV----LENSLS 705
+ S+ E + E +E + E LL ++E +E+ +E+ L +
Sbjct: 301 AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYA 360
Query: 706 DLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVN 765
+L ELE +R +++ +++ E + L ++ ++ L +L +E L
Sbjct: 361 ELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSE 420
Query: 766 SLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAE 825
L D NA + G+ AK LE+ E + L + L + L DL++ Y
Sbjct: 421 ELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR 480
Query: 826 LEGRYLGLEEE---KESTLQKVEE 846
+E L+ E E+ + EE
Sbjct: 481 VEKELSKLQRELAEAEAQARASEE 504
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-08
Identities = 63/321 (19%), Positives = 130/321 (40%), Gaps = 25/321 (7%)
Query: 229 SERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLE-SEVSHAREDSKGLSEQ 287
E + + ++ I + L +L E+E +Y+ L+ E E+ +E L Q
Sbjct: 183 EENIERLDLIIDEKRQQLERLRREREK-AERYQALLKEKREYEGYELLKEKEA---LERQ 238
Query: 288 ASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKA 347
E ++ +L+E L +L E ++ ++ L + K I
Sbjct: 239 KEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD-------------LG 285
Query: 348 EIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEV 407
E E +K + +EAE R I+ E +L +EE ++ DK +E+
Sbjct: 286 EEEQLRVKEKIGELEAEIA-------SLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
Query: 408 ERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAE 467
E L++ + + + ++ L +Y + E + L +L ++E EL + KL+ +
Sbjct: 339 EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398
Query: 468 EKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQ 527
+ L+R L EL+ + +++ + + + ++ L +++ L + E +
Sbjct: 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458
Query: 528 TLQHLHSQSQDELRSLAAELQ 548
L S+ + EL L E
Sbjct: 459 QLAADLSKYEQELYDLKEEYD 479
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-08
Identities = 79/364 (21%), Positives = 150/364 (41%), Gaps = 45/364 (12%)
Query: 350 EAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEED----SKRINKV--ADKA 403
EA L+ +L + A + E +R ++ L + E+D S +N V A +
Sbjct: 287 EALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQ 346
Query: 404 ESEVERLKQALGKLT----EEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNG 459
+ ++ER + L +L E+ E + +Q E E + AEEE L S+L +
Sbjct: 347 QEKIERYQADLEELEERLEEQNEVVEEADEQQEEN----EARAEAAEEEVDELKSQLADY 402
Query: 460 FAKLKGAEEKCL-------LLERSNQTLH------SELESMVQKMGSQSQELTEKQKELG 506
L + + + LER+ Q E +++ ++ QE TE+ L
Sbjct: 403 QQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLE 462
Query: 507 RLWTCIQEERLRF-------------VEAETAFQTLQHLHSQSQDELRSLAAELQNRAQI 553
+ + Q +F V A+ + L + + E R LA +LQ
Sbjct: 463 QKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLR-EQRHLAEQLQQLRMR 521
Query: 554 LKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELR 613
L ++ R + Q+ E++ E NL + ++ LQ+E L + L V
Sbjct: 522 LSELEQRLR-QQQRAERLLAEFCKRLGKNLDDEDELEQLQEE---LEARLESLSESVSEA 577
Query: 614 VDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVY 673
++R AL+Q++ L+ + L + A + ++++ E G ++ QD ++++
Sbjct: 578 RERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLL 637
Query: 674 ERDR 677
ER+R
Sbjct: 638 ERER 641
|
Length = 1486 |
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 2e-08
Identities = 140/789 (17%), Positives = 320/789 (40%), Gaps = 66/789 (8%)
Query: 192 KFGEGRARKGLNFHDAEENEQLQHNESYDIKARVPSESERMGKAEMEILTLKNALAKLEA 251
K+ + K D +++ Q S +I +E + + EI + + KL+
Sbjct: 210 KYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDN 269
Query: 252 EKEAGLLQYRQSLERLSNLESEVSHARED-----SKGLSEQASIAEAEVQTLKEALARLE 306
E +A + +++ SE+ E + L++ + V+ + L +
Sbjct: 270 EIKA----LKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQ 325
Query: 307 TEREANIRQYQQCLDKLSNMEKNISRA--EADAVELSDRASKAEIEAQTLKLDLARIEAE 364
E E ++ + + + + R +AD + RA + I++ +L+L E
Sbjct: 326 RELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERG 385
Query: 365 KEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEAL 424
+ ++ + + E+++K ++ +S+ ++ ++ +EK+ L
Sbjct: 386 PFSER-------QIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGL 438
Query: 425 ALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAK---LKGAEEKCLLLERSNQTLH 481
+ E + + +L +E Q+L D L+ AE + E+++ T
Sbjct: 439 GRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTET 498
Query: 482 SELESMVQK-----MGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQS 536
+ E + + + ++L ++ ++L T + + + + ++ + S+
Sbjct: 499 LKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRH 558
Query: 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKN-LQDE 595
DEL SL N+ Q+ + S +E+ + ++ LN L+S E KN + +E
Sbjct: 559 SDELTSLLGYFPNKKQLEDWL----HSKSKEINQTRDRLAKLN-KELASLEQNKNHINNE 613
Query: 596 ILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENF 655
+ S E + E ++ V + ++ LKEE+ E + K +AM+ +V +
Sbjct: 614 LESKEEQLSSYEDKL-FDVCGSQDEESDLERLKEEI-EKSSKQRAMLAGATAV------Y 665
Query: 656 GLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVR 715
+ +L DEN V +R + L E + ++ L S + E R
Sbjct: 666 SQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRR 725
Query: 716 DKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVE 775
D++ L Q+++ K ++ ++ L+K++ + L N + + +
Sbjct: 726 DEMLGLAPGRQSIIDLKE----------KEIPELRNKLQKVNRDIQRLKNDIEEQETLLG 775
Query: 776 GLRAKSKSLEDSCLLLD---NEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLG 832
+ + +S + L D E+ + + V A+ DL+++ ++
Sbjct: 776 TIMPEEESAKV--CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQE 833
Query: 833 LEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEE 892
+ E ++ + K+E + L ++Q+ ++ L + QI L R++ +EE
Sbjct: 834 KQHELDTVVSKIELNR-KLIQDQQEQIQHLKSKTNELKSEKLQIG----TNLQRRQQFEE 888
Query: 893 ELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEE 952
+L + L +++ I + I+D KE++ L +K QE E+LI E N + Q++
Sbjct: 889 QLVE-LSTEVQSLIRE--IKDAKEQDSPLETFLEKDQQE---KEELISSKETSNKKAQDK 942
Query: 953 MRSLVDQIK 961
+ + +++K
Sbjct: 943 VNDIKEKVK 951
|
All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-08
Identities = 64/352 (18%), Positives = 137/352 (38%), Gaps = 38/352 (10%)
Query: 321 DKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMIS 380
A+ L +R + E +L+ +L RIE + + + SR I
Sbjct: 660 RAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG 719
Query: 381 ALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEH 440
+E K I ++ + E ERL++ E +S LE
Sbjct: 720 EIE----------KEIEQLEQEEEKLKERLEEL------------------EEDLSSLEQ 751
Query: 441 KLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTE 500
++ + E + L + ++ L EE LE HS + + ++ +E++
Sbjct: 752 EIENVKSELKELEARIEELEEDLHKLEEALNDLEAR--LSHSRIPEIQAELSKLEEEVSR 809
Query: 501 KQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTR 560
+ L + + L E Q LQ +++++S+ E++N +++
Sbjct: 810 IEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE 869
Query: 561 NQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNAL 620
+ L+ + ++ L + L+ ++ L I +LEA++E + + + L
Sbjct: 870 LEELEAALRDLESRLGDL-------KKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922
Query: 621 QQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEV 672
+ ++ L+EEL+E+ E E L+ E+ ++ +++E L+ V
Sbjct: 923 KAKLEALEEELSEIEDPKGEDEEIPEEE-LSLEDVQAELQRVEEEIRALEPV 973
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 9e-08
Identities = 75/381 (19%), Positives = 164/381 (43%), Gaps = 25/381 (6%)
Query: 393 SKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRL 452
+ + +E++RL++ L L E +L Q L I +L++ +A R
Sbjct: 662 PRGGILFSRSEPAELQRLRERLEGLKRELSSL----QSELRRIENRLDELSQELSDASRK 717
Query: 453 HSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCI 512
E++ +L+ EEK L+ + L +L S+ Q++ + EL E + + L +
Sbjct: 718 IGEIEKEIEQLEQEEEK---LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDL 774
Query: 513 QEERLRFVE-----AETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEE 567
+ + + + +Q S+ ++E+ + A L+ Q L + + L++E
Sbjct: 775 HKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834
Query: 568 VEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCL 627
+++++E+ L E S + I+NL + L E + +LEA + + L++E L
Sbjct: 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894
Query: 628 KEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKL 687
+ +L EL +K + + Q+E ++ L++E S++++ D L
Sbjct: 895 EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE 954
Query: 688 EIMEKLLEKNAVLENSLSDLNV----ELEGVRDKVKALEEVCQNLLAEKSTLV------- 736
++ +L + +L +N+ E E V ++ L+E L E+ ++
Sbjct: 955 DVQAELQRVEEEIR-ALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013
Query: 737 -AEKNSLFSQLQDVNENLKKL 756
++ + +NEN ++
Sbjct: 1014 KKKREVFMEAFEAINENFNEI 1034
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-07
Identities = 56/262 (21%), Positives = 112/262 (42%), Gaps = 13/262 (4%)
Query: 206 DAEENEQLQHNESYDIK---ARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQ 262
+ EE + D+ A V ER+ + E+ L+ + +LE E + +
Sbjct: 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
Query: 263 SLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDK 322
+ + LE+++ +E+ K L E AE+ L E A L E+ R+ +
Sbjct: 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839
Query: 323 LSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISAL 382
L ++E+ I D L+ AEIE L+ + +E+E EA + + ++ L
Sbjct: 840 LEDLEEQIEELSEDIESLA-----AEIE--ELEELIEELESELEALLNERASLEEALALL 892
Query: 383 EDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKL 442
+L E+ + + + E+E L++ L +L E L ++ E +S +
Sbjct: 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS---EEY 949
Query: 443 ARAEEEAQRLHSELDNGFAKLK 464
+ EEA+ L +++++ + +
Sbjct: 950 SLTLEEAEALENKIEDDEEEAR 971
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-07
Identities = 56/276 (20%), Positives = 116/276 (42%), Gaps = 15/276 (5%)
Query: 234 KAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQAS-IAE 292
E + ++ LA LE E E + E +S LE + + + L+++ + E
Sbjct: 234 ALERQKEAIERQLASLEEELE-------KLTEEISELEKRLEEIEQLLEELNKKIKDLGE 286
Query: 293 AEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQ 352
E +KE + LE E + R + +L + E+ +++ EA+ +L + E E +
Sbjct: 287 EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE 346
Query: 353 TLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQ 412
+ ++ E + E+ + ++ + + ++ K + +K + E+ LK+
Sbjct: 347 EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406
Query: 413 ALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLL 472
L +L EE Q+ E ++ L +A E + L E ++ ++K E K
Sbjct: 407 ELDRLQEEL-------QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ 459
Query: 473 LERSNQTLHSELESMVQKMGSQSQELTEKQKELGRL 508
L EL + ++ +EL++ Q+EL
Sbjct: 460 LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA 495
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 5e-07
Identities = 50/233 (21%), Positives = 100/233 (42%), Gaps = 7/233 (3%)
Query: 229 SERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQA 288
E + + +I L+ +A LE + + ERL+ LE+E+ + + L +
Sbjct: 286 EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREI 345
Query: 289 SIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAE 348
L E A L+ E E + ++ ++K + + + ++ K +
Sbjct: 346 EEERKRRDKLTEEYAELKEELEDLRAELEE-------VDKEFAETRDELKDYREKLEKLK 398
Query: 349 IEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVE 408
E LK +L R++ E + + + + I+ +E K+ EE+ + K E ++E
Sbjct: 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458
Query: 409 RLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFA 461
+L L K +E L +Y + + +S L+ +LA AE +A+ + G A
Sbjct: 459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRA 511
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 8e-07
Identities = 57/265 (21%), Positives = 123/265 (46%), Gaps = 9/265 (3%)
Query: 592 LQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLN 651
E+ LRE + L+ E+ + ++ + L +EL++ ++K + +++E +
Sbjct: 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731
Query: 652 PENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIME----KLLEKNAVLENSLSD- 706
E ++EL+++ S L++ E + E L ++E +E KL E LE LS
Sbjct: 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS 791
Query: 707 ----LNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNF 762
+ EL + ++V +E + + + + L EK L ++Q++ E L ++
Sbjct: 792 RIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS 851
Query: 763 LVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKS 822
+ + + N + E L + + LE + L++ L ER L +QL + +++LE
Sbjct: 852 IEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQ 911
Query: 823 YAELEGRYLGLEEEKESTLQKVEEL 847
+ R L+ + E+ +++ E+
Sbjct: 912 IEKKRKRLSELKAKLEALEEELSEI 936
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 9e-07
Identities = 133/577 (23%), Positives = 247/577 (42%), Gaps = 75/577 (12%)
Query: 300 EALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLA 359
+ L + E + I + ++ + + N+E+ I E + E+ ++ E L+ +L
Sbjct: 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELE 224
Query: 360 RIEAEK---EAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGK 416
++E E E + EE + + +LE EE + + + ++ + E+E L++ + +
Sbjct: 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE 284
Query: 417 LTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERS 476
L E KE A +Y + E +L E+ RL E++ ++K
Sbjct: 285 LKELKE-KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK------------ 331
Query: 477 NQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQS 536
ELE +++ ++L E +K L L EER ++ +
Sbjct: 332 ------ELEEKEERLEELKKKLKELEKRLEEL-----EERHE------LYEEAK----AK 370
Query: 537 QDELRSLAAELQNR-----AQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKN 591
++EL L L + L+++ + ++EE+ K+ L + IK
Sbjct: 371 KEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELK-------KEIKE 423
Query: 592 LQDEILSLRETIGKL-----EAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVE 646
L+ I L++ GK E E R + E+ +++EL E+ +K + + +++
Sbjct: 424 LKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELR 483
Query: 647 SVS--LNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSL 704
+ L E+ + +KEL ++ +L+E ++ E+ L +K E EKL EK L+ +
Sbjct: 484 ELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEE--LEKKAEEYEKLKEKLIKLKGEI 541
Query: 705 SDLNVELE---GVRDKVKALEEVCQNLLAEKSTLVAEKNSL-FSQLQDVNENLKKLSDEN 760
L ELE ++ K+ LE+ L E + L+ E L F ++++ E LK+L
Sbjct: 542 KSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFY 601
Query: 761 NFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLE 820
N + L DA E+E + K LE E E +L+ RK L++LE
Sbjct: 602 NEYL-ELKDAEKELEREEKELKKLE-------EELDKAFEELAETEKRLEELRKELEELE 653
Query: 821 KSYAE-----LEGRYLGLEEEKESTLQKVEELQFSLD 852
K Y+E L YL L E ++EEL+ +
Sbjct: 654 KKYSEEEYEELREEYLELSRELAGLRAELEELEKRRE 690
|
Length = 880 |
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-06
Identities = 130/582 (22%), Positives = 239/582 (41%), Gaps = 55/582 (9%)
Query: 220 DIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHARE 279
+I+ + + + + + EI + + L +L E E + ++ L L+ E+ +
Sbjct: 190 NIEELIKEKEKELEEVLREINEISSELPELREELEK----LEKEVKELEELKEEIEELEK 245
Query: 280 DSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVE 339
+ + L E +++ L+E + L+ + + + + L +L + + E
Sbjct: 246 ELESLEGSKRKLEEKIRELEERIEELK-KEIEELEEKVKELKELKEKAEEYIKLSEFYEE 304
Query: 340 LSDRASKAEIEAQTLKLDLARIEA---EKEAAVVKYEECSRMISALEDKLLHSEEDSKRI 396
D + E L+ ++ IE E E + EE + + LE +L EE +
Sbjct: 305 YLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELY 364
Query: 397 NKVADKAESEVERLKQALGKLTEEK-----EALALQYQQCLEAISILEHKLARAEEEAQR 451
+ K E E+ERLK+ L LT EK E L ++ E IS + ++ ++E +
Sbjct: 365 EEAKAKKE-ELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKE 423
Query: 452 LHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTC 511
L ++ +LK A+ KC + R H + + + + EL +KEL +
Sbjct: 424 LKKAIE----ELKKAKGKCPVCGRELTEEHRK-----ELLEEYTAELKRIEKELKEIEEK 474
Query: 512 IQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKV 571
++ R E E + L L+ LA +L+ + LK EE+EK
Sbjct: 475 ERKLRKELRELEKVLKKESELIK-----LKELAEQLKELEEKLKKYNL------EELEKK 523
Query: 572 KEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEEL 631
EE + L E + IK+L+ E+ L E KL L++++ L+EEL
Sbjct: 524 AEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA-----------ELEKKLDELEEEL 572
Query: 632 NELNKKHQAM----VEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKL 687
EL K+ + + VE++E E F EL+D +L+ + + + L +
Sbjct: 573 AELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAF 632
Query: 688 EIMEKLLEKNAVLENSLSDLNV-----ELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSL 742
E + + ++ L L +L E E +R++ L L AE L + +
Sbjct: 633 EELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEI 692
Query: 743 FSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSL 784
L+ + E L++ ++ + L A VE LR K K
Sbjct: 693 KKTLEKLKEELEER-EKAKKELEKLEKALERVEELREKVKKY 733
|
Length = 880 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 86/416 (20%), Positives = 173/416 (41%), Gaps = 62/416 (14%)
Query: 459 GFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLR 518
G +G Q L LE + +++ S EL + L
Sbjct: 658 GSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLD------------ 705
Query: 519 FVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGL 578
E + + E+ L E + + L+++ SL++E+E VK E K L
Sbjct: 706 --ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL 763
Query: 579 NELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKH 638
I+ L++++ L E + LEA L + +Q E+ L+EE++ + +
Sbjct: 764 -------EARIEELEEDLHKLEEALNDLEA--RLSHSRIPEIQAELSKLEEEVSRIEARL 814
Query: 639 QAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLE-KLEIMEKLLEKN 697
+ + +++ ++L E ++ELQ++ LKE + +++ L K E +E+ LE+
Sbjct: 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE-QIKSIEKEIENLNGKKEELEEELEEL 873
Query: 698 AVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQL----QDVNENL 753
L +L+ RD+++A + + E + +K S+L + + E L
Sbjct: 874 EAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
Query: 754 KKLSDENNFLVN------SLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVS 807
++ D SL D AE++ + + ++LE VN+
Sbjct: 934 SEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEP----------------VNM-- 975
Query: 808 QLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQ 863
+A + +++ K EL+ + LEEE+++ L+++EE EK++ F++
Sbjct: 976 ---LAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY------EKKKREVFME 1022
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-06
Identities = 66/346 (19%), Positives = 117/346 (33%), Gaps = 52/346 (15%)
Query: 230 ERMGKAEMEILTLKNALAKLEAEKE--AGLLQ-------YRQSLERLSNLESEVSHARED 280
R+ + E+ L L L A + A L R + R + E + A +
Sbjct: 749 ARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERE 808
Query: 281 SKGLSEQASIAEAEVQTLKEALAR-------------LETEREANIRQYQQCLDKLSNME 327
+ +A+ A A + + L R LE A ++++ L L
Sbjct: 809 LARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLA-LKRFGDHLHTLEVAV 867
Query: 328 KNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLL 387
+ + A A E RA++AE +A+ D A AE E A ++ + A+ D++
Sbjct: 868 RELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIR 927
Query: 388 HSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEE 447
+++ + + L +L E EA E K A A+
Sbjct: 928 ARLAETRA----------ALASGGRELPRLAEALATAE-------EARGRAEEKRAEADA 970
Query: 448 EAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGR 507
D+ +L+ LL + T EL++ + E K
Sbjct: 971 TLDERAEARDHAIGQLREFALTGLLEDALPDTEVPELDA------KWTIEAALKVAR--- 1021
Query: 508 LWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQI 553
+ L+ + + A + S+ ELR A L + AQ+
Sbjct: 1022 ---RTEAALLQVADDDEALDRAANRISEEYLELRRTLAALGDDAQM 1064
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353 |
| >gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 5e-06
Identities = 97/446 (21%), Positives = 181/446 (40%), Gaps = 90/446 (20%)
Query: 263 SLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDK 322
SL + L + + + +D S Q EA E + + + Q + +
Sbjct: 79 SLRTVMELPQKSTSSDDDHNRASMQ--RDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGM 136
Query: 323 LSNMEKNI---SRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMI 379
+ N EKNI ++A A+E DL +I EKEA I
Sbjct: 137 IQNAEKNILLLNQARLQALE-----------------DLEKILTEKEA-------LQGKI 172
Query: 380 SALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILE 439
+ LE +L SE D++ K+A + + VE L++ L KL E C+ ++S E
Sbjct: 173 NILEMRL--SETDAR--IKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLS-KE 227
Query: 440 HKLARAE-----EEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQ 494
+ + E ++ Q L +EL + EE+ LE+ S L++ ++++ S+
Sbjct: 228 LDVLKEENMLLKDDIQFLKAELIE----VAETEERVFKLEKE----RSLLDASLRELESK 279
Query: 495 SQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQIL 554
Q+++ +L + VE LQ L ++ +++ A L
Sbjct: 280 ---FIVAQEDVSKLSPLQYDCWWEKVE------NLQDLLDRATNQVEKAALVLD------ 324
Query: 555 KDMGTRNQSLQEEVEKVKEENKGLNELNLS--SAESIKNLQDEILSLRETIGKLEAE--- 609
+NQ L+++V+K++ L E N+S S+ ++ LQ ++ L E + + E
Sbjct: 325 -----QNQDLRDKVDKLEAS---LKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHS 376
Query: 610 -VELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVES--------VSLNPENFGLSVK 660
++L + Q + LKEE K +++ + + L + + L K
Sbjct: 377 YIQLYQESIKEFQDTLSKLKEE-----SKKRSLEHPADDMPSEFWSRILLLIDGWLLEKK 431
Query: 661 ELQDENSKLKE-VYERDRCEKVALLE 685
++ L+E V++RD + A L
Sbjct: 432 ISNNDAKLLREMVWKRDGRIREAYLS 457
|
Length = 977 |
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 6e-06
Identities = 81/547 (14%), Positives = 215/547 (39%), Gaps = 25/547 (4%)
Query: 241 TLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKE 300
+ ++ EK+ E L + E+ ++ + L + Q L++
Sbjct: 423 LKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRK 482
Query: 301 ALARL-ETEREANIRQYQQCLDKLSNMEKNISRAE-ADAVELSDRASKAEIEAQTLKLDL 358
A L + E+ + ++ + L N + ++ R E+ Q L
Sbjct: 483 AERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTK 542
Query: 359 ARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLT 418
+++ +++ +K + S L + K++ E+ + + L KL
Sbjct: 543 DKMDKDEQIRKIKSRHSDELTSLLGYF-----PNKKQLEDWLHSKSKEINQTRDRLAKLN 597
Query: 419 EEKEALALQYQQCLEAISILEHKLARAEEE------AQRLHSELDNGFAKLKGAEEKCLL 472
+E +L + E +L+ E++ +Q S+L+ +++ + ++ +
Sbjct: 598 KELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAM 657
Query: 473 LERSNQTLHSELESMVQKMGS---QSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTL 529
L + + + + S Q + + + EL + +Q + + + ++
Sbjct: 658 LAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESE 717
Query: 530 QHLHSQSQDELRSLA----AELQNRAQILKDMGTRNQSLQEEVEKVK---EENKGLNELN 582
+ +DE+ LA + + + + + ++ + Q + +++++K EE + L
Sbjct: 718 LKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTI 777
Query: 583 LSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMV 642
+ ES K ++ + +L+ +VE ++ Q+ A Q L + ++N++ Q
Sbjct: 778 MPEEESAKVCLTDVTIMERFQMELK-DVERKIAQQAAKLQGSD-LDRTVQQVNQEKQEKQ 835
Query: 643 EQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLEN 702
++++V E +++ Q++ LK + EK+ + L+ ++ E+ L
Sbjct: 836 HELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELST 895
Query: 703 SLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNF 762
+ L E++ +++ LE + EK L++ K + + QD ++K+ +
Sbjct: 896 EVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHG 955
Query: 763 LVNSLFD 769
+ + +
Sbjct: 956 YMKDIEN 962
|
All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-05
Identities = 54/248 (21%), Positives = 116/248 (46%), Gaps = 9/248 (3%)
Query: 221 IKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHARED 280
I+ R+ S+ + A +I ++ + +LE E+E + + E LS+LE E+ + + +
Sbjct: 700 IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE 759
Query: 281 SKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVEL 340
K L + E ++ L+EAL LE + + + +LS +E+ +SR EA
Sbjct: 760 LKELEARIEELEEDLHKLEEALNDLE--ARLSHSRIPEIQAELSKLEEEVSRIEA----- 812
Query: 341 SDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVA 400
R + E + L L+ +E E + + + I ++E ++ + + + +
Sbjct: 813 --RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
Query: 401 DKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGF 460
++ E+ + L+ LG L +E++ L Q ++ I LE ++ + + L ++L+
Sbjct: 871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE 930
Query: 461 AKLKGAEE 468
+L E+
Sbjct: 931 EELSEIED 938
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 41/234 (17%), Positives = 89/234 (38%), Gaps = 11/234 (4%)
Query: 403 AESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAK 462
AE+E E + L K +E+EA+ + + ++ + +LAR ++AQ L + L +
Sbjct: 100 AETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQ 159
Query: 463 LKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEA 522
+ E + +S Q +L++ ++ SQ +L + ++ + +
Sbjct: 160 RRQLEAQ----AQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQAR 215
Query: 523 ETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELN 582
Q+ ++ A++ +AQ + R + ++E +++ L
Sbjct: 216 TEELARRAAAAQQTAQAIQQRDAQISQKAQ---QIAARAEQIRERERQLQRLETAQARLE 272
Query: 583 LSSAESIKNLQDEILSLRETI----GKLEAEVELRVDQRNALQQEIYCLKEELN 632
A+ Q + ++ G++ A RV Q A Q L N
Sbjct: 273 QEVAQLEAYYQAYVRLRQQAAATQRGQVLAGAAQRVAQAQAQAQAQAQLLSSAN 326
|
Length = 499 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-05
Identities = 48/236 (20%), Positives = 101/236 (42%), Gaps = 15/236 (6%)
Query: 633 ELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKV----ALLEKLE 688
E ++K + +E++E V N E L + E + + +L+ ER++ E+ + E
Sbjct: 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRR--EREKAERYQALLKEKREYE 224
Query: 689 IMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQD 748
E L EK A+ + E + ++ +LEE + L E S L + L++
Sbjct: 225 GYELLKEKEALER--------QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEE 276
Query: 749 VNENLKKL-SDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVS 807
+N+ +K L +E + + + AE+ L E + + L E L++
Sbjct: 277 LNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLA 336
Query: 808 QLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQ 863
+++ + +++ K +L Y L+EE E ++EE+ + + + +
Sbjct: 337 EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 5e-05
Identities = 120/786 (15%), Positives = 232/786 (29%), Gaps = 72/786 (9%)
Query: 391 EDSKRINKVADKAESEVERLKQALGKLTEEKEALAL-------QYQQCLEAISILEHKLA 443
+ +++ A E + K GK L E +LE +L
Sbjct: 170 MNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELK 229
Query: 444 RAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQK 503
E Q+ K + EE+ Q L +L + ++++ +Q L E Q+
Sbjct: 230 HLREALQQTQQSHAYLTQKREAQEEQ-----LKKQQLLKQLRARIEELRAQEAVLEETQE 284
Query: 504 EL--GRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRN 561
+ R + + E Q Q +H++ Q ++RS A L RA +K +
Sbjct: 285 RINRARKAAPLAAHIKAVTQIE---QQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIE 341
Query: 562 QSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQ 621
+ + +E A SI+ + + +L + I L+ + + +L
Sbjct: 342 EQRRLLQTLHSQEI--HIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLC 399
Query: 622 QEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKV 681
+E+ L+ E ++ + A L+ + Q E +
Sbjct: 400 KELDILQREQATIDTRTSAF---------RDLQGQLAHAKKQQELQQRYAELCAAAITCT 450
Query: 682 ALLEKLEIME--KLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEK 739
A EKLE + + + E L K + L E L
Sbjct: 451 AQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSC 510
Query: 740 NSLFSQLQDVNEN------LKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDN 793
QD++ +++ L S D ++ R + SL++ +
Sbjct: 511 IHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQ 570
Query: 794 EKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDA 853
S L + + L+ E+ E+ E L
Sbjct: 571 SFSILTQCDNRSKEDIPNLQNITVRLQDL----------TEKLSEAEDMLACEQHALL-- 618
Query: 854 EKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQD 913
K Q + + Q S L A + L + + + I +
Sbjct: 619 RKLQP----EQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKEL 674
Query: 914 LKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEI 973
L + +L + Q + E L Q +R L I+ + ++
Sbjct: 675 LASRQLALQKMQSEKEQLTYWKEMLAQC--------QTLLRELETHIEEYDREFNEIEN- 725
Query: 974 LEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQ 1033
A + + + L+Q +L +VLKA + H E G
Sbjct: 726 ----ASSSLGSDLAARED---ALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGA 778
Query: 1034 LKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTE 1093
N L EE + + ++ + L ++ EE +
Sbjct: 779 ELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQ--EIPSDEDILNLQCETLVQEEEQFLSR 836
Query: 1094 MRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCVMFVETISQ 1153
+ L E+ Q L+ + C + + + + +K + + + F
Sbjct: 837 LEEKSATLGEIT--HQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDGDALI 894
Query: 1154 SNLSHI 1159
L I
Sbjct: 895 KFLHEI 900
|
All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-04
Identities = 68/299 (22%), Positives = 126/299 (42%), Gaps = 25/299 (8%)
Query: 497 ELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKD 556
E E KE L + + E + L S+ + L + L+ + +KD
Sbjct: 224 EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD 283
Query: 557 MGTRNQ-SLQEEVEKVK------EENKGLNELNLS-SAESIKNLQDEILSLRETIGKLEA 608
+G Q ++E++ +++ E + E L + E + L+ EI L I +LE
Sbjct: 284 LGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER 343
Query: 609 EVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSK 668
E+E +R+ L +E LKEEL +L ++E V + F + EL+D K
Sbjct: 344 EIEEERKRRDKLTEEYAELKEELEDL-------RAELEEVD---KEFAETRDELKDYREK 393
Query: 669 LKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNL 728
L+++ + E +++L E+ L L+DLN + G+ K+ LEE ++
Sbjct: 394 LEKLKRE-------INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK 446
Query: 729 LAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDS 787
E + L + L + L L +E + + L E+ A++++ E+
Sbjct: 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-04
Identities = 131/600 (21%), Positives = 234/600 (39%), Gaps = 56/600 (9%)
Query: 234 KAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEA 293
+ E+ L++ A++E E++A L E NLE EV K L E AE
Sbjct: 74 ENELMQKELEHKRAQIELERKASTLAENYERELDRNLELEV-----RLKALEELEKKAEN 128
Query: 294 EVQTLKEALARLETEREANIRQYQ-QCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQ 352
E +E L+ + +A + Q + D+L +++ISR + D E+ RA A+ E +
Sbjct: 129 EAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSEMQCRAQNADTELK 188
Query: 353 TLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQ 412
L+ +L + + E + E + + +L + S ++S +I + E E++R +Q
Sbjct: 189 LLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIKHL----EEELKRYEQ 244
Query: 413 ALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLL 472
+ KE L ++ E E L E KL+ +E L
Sbjct: 245 DAEVVKSMKEQLL---------------QIPELERELAALREEN----RKLRSMKEDNEL 285
Query: 473 LERSNQTLHSEL---ESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTL 529
L+ + L S L E M +K+ E + + EL + +Q+ L + + +
Sbjct: 286 LKEELEDLQSRLERFEKMREKLADLELEKEKLENELKSWKSLLQDIGLNLRTPDDLSRRI 345
Query: 530 QHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESI 589
L Q+E L + + + K + T Q LQ E +K E L + + +
Sbjct: 346 VVL----QNEELQLKEKNGSISSSAKQLETTLQQLQLERQKAVSEILELKKKLEALKALV 401
Query: 590 KNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVS 649
+ LQ + + + L A + D+ L + L E + +V++V+S
Sbjct: 402 RRLQRRLTLVTKERDGLRAILN-SYDKELTETSVSGQLMKRLEEA----EDLVQKVQSHL 456
Query: 650 LNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNV 709
EN + EL+++ + K+ E ++ L E+ E LS +
Sbjct: 457 AKMEN---QLSELEEDVGQQKDRNNTLETE----------IKLLKEQLVSNERLLSFVKE 503
Query: 710 ELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFD 769
+R K++ LE L EKS L + L Q K L N +
Sbjct: 504 ATNALRLKIETLERERDRLRQEKSLLEMKLEHLCLQGDYNASRTKVLHMSLNPASEAEQI 563
Query: 770 ANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGR 829
A +E L+A+ + L++ L+ KS + I+ K + L+K E +
Sbjct: 564 AKQTIEALQAECEKLKERLQALEEGKS--QPGDLEKAVGSHISSKEIAQLKKQVESAEKK 621
|
This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-04
Identities = 71/323 (21%), Positives = 138/323 (42%), Gaps = 24/323 (7%)
Query: 1034 LKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTE 1093
+L+AE E L + + ++ L+ E +L E EEL+ E+ E E LK+E
Sbjct: 216 QELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSE 275
Query: 1094 MRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCVMFVETISQ 1153
+ L L ELQ L+++ ++ E L +++ +L+ E LEE
Sbjct: 276 LEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEER----------- 324
Query: 1154 SNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQSL 1213
+ E KI L E L++ + ELE+ + + E+++ + S L + L
Sbjct: 325 ----------LEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEL 374
Query: 1214 EKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILCSLQNERTELHMKVEDLT 1273
E+ L +L E+A ++ L ++E+ E+ L L +L ++++L
Sbjct: 375 EELFEALREE---LAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELE 431
Query: 1274 CKYDEAKIIQEDQGKQIRKLTEDYDCQIKETRCIHELNMKLEAELGKLLEELEGTRYREE 1333
+ +E + E+ +++ +L E + + + +L+ EL +L +EL R +
Sbjct: 432 AELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLD 491
Query: 1334 SLYHELEKERKHAGLWETQATEL 1356
L E + + E + L
Sbjct: 492 RLEAEQRASQGVRAVLEALESGL 514
|
Length = 1163 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 2e-04
Identities = 30/202 (14%), Positives = 77/202 (38%), Gaps = 4/202 (1%)
Query: 256 GLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQ 315
G+ Q +L L +E+ A+ + + + A +E+Q ++ + E A +
Sbjct: 72 GVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQN 131
Query: 316 YQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEEC 375
+ +L+ + K + L+++ + E +AQ+L+ + + +A+ + +
Sbjct: 132 LAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQAS----QKQLQASATQLKSQ 187
Query: 376 SRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAI 435
+ ++ ++ A E+ R A + + + Q Q + I
Sbjct: 188 VLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQI 247
Query: 436 SILEHKLARAEEEAQRLHSELD 457
+ ++ E + QRL +
Sbjct: 248 AARAEQIRERERQLQRLETAQA 269
|
Length = 499 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 2e-04
Identities = 134/919 (14%), Positives = 281/919 (30%), Gaps = 58/919 (6%)
Query: 379 ISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISIL 438
+E++ S E K+ ++ E + + + + L L+ Q
Sbjct: 156 RLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQ 215
Query: 439 EHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQEL 498
+ EEE L L E L L +++ S QEL
Sbjct: 216 LKEKLELEEENLLYLDYLK--------------LNEERIDLLQELLRDEQEEIESSKQEL 261
Query: 499 TEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMG 558
++++ I + L+ + E + LQ +EL+ LA E + L +
Sbjct: 262 EKEEE--------ILAQVLKENKEEEKEKKLQE------EELKLLAKEEEELKSELLKLE 307
Query: 559 TRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRN 618
R +E++++ ++E K L + E I+ L+ E+ L E E E
Sbjct: 308 RRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQ------ 361
Query: 619 ALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRC 678
K + + + + ++ L +EL+ +N + KE
Sbjct: 362 -------LEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLEL 414
Query: 679 EKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAE 738
+ E ++ L+ LE SL +L +++++ E
Sbjct: 415 SEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDL 474
Query: 739 KNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLL-DNEKSC 797
L L + A + L A K ++
Sbjct: 475 LKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLRIISAAGRGGD 534
Query: 798 LITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQ 857
L N + +A + + + E + L L +
Sbjct: 535 LGVAVANYKVAISVAVIVEVSAVADEVDERQKLVRALTELPLPARTFVLLDPLLKLPLKS 594
Query: 858 HASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEK 917
A LA + E+ K D L +E ++
Sbjct: 595 IAVLEIDPALNLAQLNKATLEADEDDKRAKVVEGILKDTELTKLLESAKAKESGLRKGVS 654
Query: 918 NFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEILEID 977
L E +L S K + + + + E+ + ++ + E+
Sbjct: 655 LEEGLAEKSELKASLSELTKELLAEQELQEKAESELAKNEILRRQEEIKKKEQRIKEELK 714
Query: 978 ADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLE 1037
+ ++ D+ + ++ LK LEQ + E L + + E
Sbjct: 715 KLKLEKEELLADKVQE---------AQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEE 765
Query: 1038 AENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRSL 1097
++ + + E ++E+ V + + KL EELR E E+L+ E
Sbjct: 766 EKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLL- 824
Query: 1098 HMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCVMFVETISQSNLS 1157
+ E + ++ L++ ++ +E+K +L+ + + +E + + +
Sbjct: 825 --IEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEE 882
Query: 1158 HIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKDG----KLEDVQMQNSLLKQSL 1213
KD + K K + + L++ +N LEEK + + + S ++ L
Sbjct: 883 QKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELL 942
Query: 1214 EKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILCSLQNERTELHMKVEDLT 1273
+ +E +++ +A + + +K E L
Sbjct: 943 LEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLE 1002
Query: 1274 CKYDEAKIIQEDQGKQIRK 1292
+ E ++ Q K
Sbjct: 1003 EEKKELLREIIEETCQRFK 1021
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-04
Identities = 67/289 (23%), Positives = 141/289 (48%), Gaps = 9/289 (3%)
Query: 1056 SEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQN 1115
E+ L+ + KL E + L+ E+ E L+ ++ L L EL+ +L+++
Sbjct: 673 EEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEEL 732
Query: 1116 CKVLDEKKSLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLS 1175
++ + L +++ +L+EE L+E +E + + L + + + K +I +L
Sbjct: 733 EQLQSRLEELEEELEELEEELEELQER-----LEEL-EEELESLEEALAKLKE-EIEELE 785
Query: 1176 ENLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIA 1235
E L ELEE++ + +L+ ++ + L+Q E+ E E+ + ++L ++
Sbjct: 786 EKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845
Query: 1236 NGKDLLSRKEKELFVAEQILCSLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTE 1295
++ L EKEL ++ L L+ E+ EL ++++L + +E + + ++ +L E
Sbjct: 846 ELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905
Query: 1296 DYDCQIKETRCIHELNMKLEAELGKLLEELEGTRYREESLYHELEKERK 1344
+ + + + +LE EL +L EELE E++L ELE+E +
Sbjct: 906 EIEKLRERLEELEAKLERLEVELPELEEELE--EEYEDTLETELEREIE 952
|
Length = 1163 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-04
Identities = 57/267 (21%), Positives = 106/267 (39%), Gaps = 16/267 (5%)
Query: 205 HDAEENEQLQHNESYDIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSL 264
+ E ++ V R+ + E ++ L LE E + Q
Sbjct: 787 RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLK 846
Query: 265 ERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLS 324
E++ ++E E+ + + L E+ EA ++ L+ L L+ ER+ Q L
Sbjct: 847 EQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ-------LR 899
Query: 325 NMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALED 384
+E+ I EA + R S+ + + + L+ +L+ IE K + E + ++
Sbjct: 900 ELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPK-GEDEEIPEEELSLEDVQA 958
Query: 385 KLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLAR 444
+L EE+ + + V A E E + + L +L E++ L + + LE I E K
Sbjct: 959 ELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
Query: 445 AEEEA--------QRLHSELDNGFAKL 463
EA + +EL G +L
Sbjct: 1019 VFMEAFEAINENFNEIFAELSGGTGEL 1045
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 3e-04
Identities = 78/361 (21%), Positives = 148/361 (40%), Gaps = 55/361 (15%)
Query: 545 AELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSS-AESIKNLQDEILSLRETI 603
+ NRA + +D ++ E + ++ + L++ L I+N + IL L +
Sbjct: 94 DDDHNRASMQRD--EAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQAR 151
Query: 604 GKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQ 663
+ ++E + ++ ALQ +I L+ L+E + + + + E + + E Q
Sbjct: 152 LQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQ---------EKIHVEILEEQ 202
Query: 664 DENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEE 723
E + E+ R E + + + ++ L E+N +L++ + L EL +V EE
Sbjct: 203 LEKLR-NELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAEL----IEVAETEE 257
Query: 724 VCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKS 783
L E+S L A L S+ E++ KLS + + K ++
Sbjct: 258 RVFKLEKERSLLDASLRELESKFIVAQEDVSKLS-------------PLQYDCWWEKVEN 304
Query: 784 LEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTL-- 841
L+D LLD N V + + +DL +LE L+E S
Sbjct: 305 LQD---LLDRAT--------NQVEKAALVLDQNQDLRDKVDKLEA---SLKEANVSKFSS 350
Query: 842 -------QKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEEL 894
QK++ L+ L A + S++QL + + + +S L+EE +K++ E
Sbjct: 351 YKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEES--KKRSLEHPA 408
Query: 895 D 895
D
Sbjct: 409 D 409
|
Length = 977 |
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 403 AESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAK 462
A + L+Q L +L EE L Q + + L+ +L+ E E +RL EL A+
Sbjct: 64 ARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKEL----AR 119
Query: 463 LKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLW 509
+K + L+ N+ L EL + Q+ + E Q+ R W
Sbjct: 120 IKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQRRW 166
|
Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198 |
| >gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 70/318 (22%), Positives = 130/318 (40%), Gaps = 12/318 (3%)
Query: 427 QYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELES 486
Q + C + L K E + + S ++ L+ + EK LE ++ S ES
Sbjct: 144 QLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSES 203
Query: 487 MVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAE 546
M + + + E Q+ + L IQ + E + + Q + ++ + L
Sbjct: 204 MSAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQR 263
Query: 547 LQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRE----T 602
L+ +D T LQ E E++ E+ + L E SS + L +E+ SL T
Sbjct: 264 LKKMTIQRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGEELASLGSLRDHT 323
Query: 603 IGKLE------AEVELRVDQRN-ALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENF 655
I +L A++ L++ Q N AL++ +E L + +A ++++ +S
Sbjct: 324 IAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKLSAELLKL 383
Query: 656 GLSVKELQDENSKLK-EVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGV 714
++E + + KL+ E+ C +V L E + +L VL+ L E + +
Sbjct: 384 EEWLQEERSQREKLEVELGIEKDCNRVQLSENRRELSELRSALRVLQKEKEQLQEEKQEL 443
Query: 715 RDKVKALEEVCQNLLAEK 732
D ++ LE EK
Sbjct: 444 LDYIRVLELRLDKEADEK 461
|
Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546 |
| >gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 4e-04
Identities = 62/354 (17%), Positives = 145/354 (40%), Gaps = 47/354 (13%)
Query: 277 AREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEAD 336
A+ + + + E +++ + E L L E N + +Q D + K++ A+
Sbjct: 103 AKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLL---AN 159
Query: 337 AVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRI 396
+ E + + L+ + ++ E+ Y E ++ LE++L E+ + I
Sbjct: 160 RFSFGPALDELEKQLENLEEEFSQFVELTESG--DYVEAREILDQLEEELAALEQIMEEI 217
Query: 397 NKVADKAESEV----ERLKQALGKLTEEK------------EALALQYQQCLEAISILEH 440
++ + ++E+ + LK +L EE + L Q + L + L+
Sbjct: 218 PELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELD- 276
Query: 441 KLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTE 500
L AEE+ + + +D + L E+ + + + L ++ Q++EL E
Sbjct: 277 -LDEAEEKNEEIQERIDQLYDIL----EREVKARKYVEKNSDTLPDFLEHAKEQNKELKE 331
Query: 501 KQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTR 560
+ + + +T + E E E+ Q + +L SL + +I + + +
Sbjct: 332 EIDRVKQSYT-LNES-----ELESVRQL--------EKQLESLEKQYD---EITERIAEQ 374
Query: 561 NQ---SLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVE 611
LQEE+E++ ++ + + + +E ++ L+ + L RE + + ++
Sbjct: 375 EIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH 428
|
Length = 569 |
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 39/229 (17%), Positives = 79/229 (34%), Gaps = 3/229 (1%)
Query: 288 ASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKA 347
A+ + A + + + E IR+ Q KL EK + E + L + +
Sbjct: 29 AAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKL---EKQLKSLETEIASLEAQLIET 85
Query: 348 EIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEV 407
+ + L+ +A + A A V+ E R ++ L S + V+ +
Sbjct: 86 ADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRS 145
Query: 408 ERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAE 467
RL G L + + L+ ++ + ++A + E L SE AKL
Sbjct: 146 VRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLL 205
Query: 468 EKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEER 516
E+ + S + ++++ + L + +E
Sbjct: 206 EERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAA 254
|
Length = 420 |
| >gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 4e-04
Identities = 89/423 (21%), Positives = 158/423 (37%), Gaps = 64/423 (15%)
Query: 261 RQSLERLSNLESEVSHAREDSKGLSEQASIAE------AEVQTLKEALARLETEREANIR 314
R + ER +L+ + RE + A+ E+ L A LE + +A
Sbjct: 276 RHANERRVHLDQALEFRRELYTSRQQLAAEQYRHVDMSRELAELNGAEGDLEADYQAASD 335
Query: 315 QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEE 374
L EK I R +AD EL+ R EE
Sbjct: 336 HLNLVQTALRQQEK-IERYQADLEELTIR----------------------------LEE 366
Query: 375 CSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEA 434
+ ++ ++ +E ++ D+ +S++ +QAL + ++ A+QYQQ + A
Sbjct: 367 QNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQAL----DVQQTRAIQYQQAIAA 422
Query: 435 ISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQ 494
+ E A+ L D AEE + + +L S+ QKM S
Sbjct: 423 L-----------ERAKELCHLPDLT---ADSAEEWLETFQAKEEEATEKLLSLEQKM-SM 467
Query: 495 SQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQIL 554
+Q + ++ +L I E R + A + L+ Q R LA ++Q L
Sbjct: 468 AQAAHSQFEQAYQLVVAIAGELARSEAWDVARELLREGPDQ-----RHLAEQVQPLRMRL 522
Query: 555 KDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRV 614
++ R + Q + + K AE ++ L E+ +L E L V
Sbjct: 523 SELEQRLRQQQSAERLLADFCKRQG--KNLDAEELEALHQELEALIE---SLSDSVSNAR 577
Query: 615 DQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYE 674
+QR AL+QE L+ + L ++ + ++ E G + QD ++++ E
Sbjct: 578 EQRMALRQEQEQLQSRIQSLMQRAPVWLAAQNALEQLSEQSGEEFTDSQDVTEYMQQLLE 637
Query: 675 RDR 677
R+R
Sbjct: 638 RER 640
|
Length = 1480 |
| >gnl|CDD|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5 | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 5e-04
Identities = 62/303 (20%), Positives = 106/303 (34%), Gaps = 19/303 (6%)
Query: 257 LLQYRQSLERL-SNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQ 315
L + Q L L S LE S D + V++L++ +L A R
Sbjct: 116 LQEAAQELRELKSELEDLRSERSRDLSDEESIKRLQRGAVRSLQD---KLLLLDAAVKRH 172
Query: 316 YQQCLDKLSNMEKNISRAEADAVELSDRAS--------KAEIEAQTLKLDLARIEAEKE- 366
+ + K + E EL++R + E L L R E E E
Sbjct: 173 DGNVITAVLIFLKRTLKLEILFQELAERQTALRHLSKHLQEEGELQQLLKLLRAEGESEK 232
Query: 367 AAVVKYEECSRMISALEDKLLHS-EEDSKRINKVADKAESEVERLKQALGKLTEEKEALA 425
+ +Y + + I ++K ++ +E + A+ E+E LK + EE L
Sbjct: 233 QELQQYRQKAHRILQSKEKRINFLKEGCLFEGLDSSTAQIELEELKHESEHVQEEITKLE 292
Query: 426 LQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELE 485
Q Q E + + E ++ EL A +++ LE Q L+ E
Sbjct: 293 GQIIQLRSEAQDREAEASGEAESFRKQPRELSQQIAPQITTKQE---LELYYQELYHYRE 349
Query: 486 SMVQKMGSQSQELTEKQKELGRLWTCIQEERL--RFVEAETAFQTLQHLHSQSQDELRSL 543
+ + + LT ++ E +L T + + + E+ L Q Q L L
Sbjct: 350 DLGNQSSPLNIRLTFRESEKQKLRTALTARAKTSSWSDLESRLTQLTQSLVQKQTMLEWL 409
Query: 544 AAE 546
E
Sbjct: 410 TTE 412
|
Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1. Length = 509 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 6e-04
Identities = 67/374 (17%), Positives = 164/374 (43%), Gaps = 39/374 (10%)
Query: 777 LRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEE 836
A+ + L + L E S L +E + ++LD + L D + E+E LE+E
Sbjct: 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731
Query: 837 KESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDK 896
+E +++EEL+ L + +Q+ + ++ L +E++I L+E+ ++A + +
Sbjct: 732 EEKLKERLEELEEDLSSLEQEIEN----VKSELKELEARIEELEEDLHKLEEALNDLEAR 787
Query: 897 ALDAQIEIFITQ-----KYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQE 951
++I + + + ++ + + + +L E EK I +L+ + + +E
Sbjct: 788 LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE 847
Query: 952 EMRSLVDQIKVLRVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVL 1011
+++S+ +I+ L + +L E LE + L + +L +++
Sbjct: 848 QIKSIEKEIENLNGKKEELEEELE---------------ELEAALRDLESRLGDLKKERD 892
Query: 1012 KALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTE 1071
+ Q ++ + + +L+ + E + L + E+ ++ + E
Sbjct: 893 ELEAQLRELERK-------IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE 945
Query: 1072 INEE---LRVEVAERNHTEEVLKTEMRSLHML----LSELQGAQQSLQDQNCKVLDEKKS 1124
I EE L AE EE ++ + ++ML E+ L+++ K+ +E+K+
Sbjct: 946 IPEEELSLEDVQAELQRVEEEIRA-LEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKA 1004
Query: 1125 LMKKVLDLQEEKHS 1138
+++++ + +++K
Sbjct: 1005 ILERIEEYEKKKRE 1018
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 6e-04
Identities = 37/236 (15%), Positives = 95/236 (40%), Gaps = 11/236 (4%)
Query: 261 RQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCL 320
R + +L ++ ++ R + + AE E + + L + ER +
Sbjct: 70 RSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQER-------EAVR 122
Query: 321 DKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMIS 380
+L+ +N+++A+ + L+ +A + +TL ++EA+ ++ ++ +
Sbjct: 123 QELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASAT 182
Query: 381 ALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEH 440
L+ ++L + S +I ++ + A TEE A QQ +AI +
Sbjct: 183 QLKSQVLDLKLRSAQI----EQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDA 238
Query: 441 KLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQ 496
++++ ++ ++ +L+ E LE+ L + ++ V+ +
Sbjct: 239 QISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAA 294
|
Length = 499 |
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-04
Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 19/176 (10%)
Query: 816 LKDLEKSYAELEGRYLGLEEEKESTLQKVEELQ----FSLDAEKQQHASFVQLSETRLAG 871
L+ +EK ELE LE E + Q++E L+ F LD +V + G
Sbjct: 95 LEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYV----SVFVG 150
Query: 872 MESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLL--FECQKL- 928
+ + + + E + + + K +L ++ L ++L
Sbjct: 151 TVPEDKLEELKLESDVE-NVEYISTDKGYVYVVVVVLK---ELSDEVEEELKKLGFERLE 206
Query: 929 LQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLL----EILEIDADH 980
L+E +LI +++ E E ++E SL++++K L + + L E LEI+ +
Sbjct: 207 LEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELER 262
|
Length = 646 |
| >gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 8e-04
Identities = 67/357 (18%), Positives = 149/357 (41%), Gaps = 47/357 (13%)
Query: 274 VSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRA 333
A++ K + E E +++ + E L L+ E N ++ ++ DK + K +
Sbjct: 96 FLKAKKAIKEIEELLDTIEEDIEQILEELNELKESEEKNRKEVEELKDKYRELRKTLL-- 153
Query: 334 EADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDS 393
A + + E + L+ + + E+ Y E ++ LE++ E+
Sbjct: 154 -AKSFSYGPALDELEKQLDELEEEFEQFVELTESG--DYLEAREVLLKLEEETDALEQKM 210
Query: 394 KRINKVADKAESEV----ERLKQALGKLTEEK------------EALALQYQQCLEAISI 437
+ I + + ++E E LK ++TEE + L Q Q L +
Sbjct: 211 EEIPPLLKELQNEFPDQLEELKAGYREMTEEGYHFDHLDIEKELQDLKEQIDQNLALLEE 270
Query: 438 LEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQE 497
L+ L AEEE + + +D + L EK + ++ + +L ++ Q+++
Sbjct: 271 LD--LDEAEEENEEIEERIDTLYDIL----EKEVKAKKFVEKNIDKLTDFLEHAREQNKQ 324
Query: 498 LTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDM 557
L + L + +T + E+ E ET + + +L L A+ Q+++ +
Sbjct: 325 LLLELDRLQQSYT-LNED-----ELETVREL--------EKQLEELEAQYD---QLVERI 367
Query: 558 GTRNQ---SLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVE 611
+ LQEE+E+++++ + + + +ES++ L+ + L RE + + ++
Sbjct: 368 AEKKVAYSELQEELEEIEKQLEEIEKEQEELSESLQGLRKDELEAREKLQEYRQKLH 424
|
During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. Length = 559 |
| >gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 9e-04
Identities = 47/207 (22%), Positives = 81/207 (39%), Gaps = 21/207 (10%)
Query: 563 SLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQ 622
L+ +++K+ K E L L E I LEAE++ + +L++
Sbjct: 42 KLESKIKKLGIPLKDTGGK------PDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEK 95
Query: 623 EIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENS-KLKEVYERDRCEKV 681
EI L+E LN L+++ + E +E +S N + K L+ KL V EK+
Sbjct: 96 EINELEEWLNVLDEEKSFLDENLEELS-ELSNLDIDFKYLRGAEGLKLGFVAGVINREKL 154
Query: 682 ALLEKLEI-MEKLLEKNAVLENSLSDLNVE-------LEGVRDKVKALEEVCQNLLAEKS 733
E+ + + A +E L D + DKVK ++ + E
Sbjct: 155 EAFERELWRACRGYIRQAEIEEPLEDPKKTVFIIFFVGKEDLDKVK---KILDSFGFEL- 210
Query: 734 TLVAEKNSLFS-QLQDVNENLKKLSDE 759
V E S + VN+ +++L
Sbjct: 211 YDVPETEGERSELISKVNKRIEELQRV 237
|
This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) subunits, as well as V-type ATP synthase subunit i. The V-type ATPases family are proton pumps that acidify intracellular compartments in eukaryotic cells for example yeast central vacuoles, clathrin-coated and synaptic vesicles. They have important roles in membrane trafficking processes. The 116kDa subunit (subunit a) in the V-type ATPase is part of the V0 functional domain responsible for proton transport. The a subunit is a transmembrane glycoprotein with multiple putative transmembrane helices it has a hydrophilic amino terminal and a hydrophobic carboxy terminal. It has roles in proton transport and assembly of the V-type ATPase complex. This subunit is encoded by two homologous gene in yeast VPH1 and STV1. Length = 707 |
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.001
Identities = 41/220 (18%), Positives = 88/220 (40%), Gaps = 24/220 (10%)
Query: 220 DIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHARE 279
DI+ ++ + +G A+ E + +E + + + L+ ++ A++
Sbjct: 78 DIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQ 137
Query: 280 DSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVE 339
+ L++QA Q L+ L L +R Q Q ++ + ++ ++ ++
Sbjct: 138 ELARLTKQA-------QDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLD 190
Query: 340 LSDRASKAEIEAQTLKL----------DLARIEAEKEAAVVKYEECSRMISALEDKLLHS 389
L R+++ E EAQ L +LAR A + ++ IS ++
Sbjct: 191 LKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAAR 250
Query: 390 EEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQ 429
E + + E +++RL+ A +L +E L YQ
Sbjct: 251 AEQIR-------ERERQLQRLETAQARLEQEVAQLEAYYQ 283
|
Length = 499 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.002
Identities = 61/309 (19%), Positives = 118/309 (38%), Gaps = 22/309 (7%)
Query: 1035 KLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKT-- 1092
+ E L E+ AL + Q L+ E KLTE EL + E E L
Sbjct: 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKI 281
Query: 1093 ------EMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCVM 1146
E + + EL+ SL+ + E + +++ L+ E L E
Sbjct: 282 KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE---- 337
Query: 1147 FVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKLEDVQMQN 1206
+E + + I E+ + L+E +L +L ++ D + + + +
Sbjct: 338 -IEELERE---------IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL 387
Query: 1207 SLLKQSLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILCSLQNERTELH 1266
++ LEK + E+ + D+L E+ + L+ + E + L+ E+ +
Sbjct: 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA 447
Query: 1267 MKVEDLTCKYDEAKIIQEDQGKQIRKLTEDYDCQIKETRCIHELNMKLEAELGKLLEELE 1326
++++ K ++ +++ L E+YD KE + + EA+ E +
Sbjct: 448 LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVR 507
Query: 1327 GTRYREESL 1335
G R EE L
Sbjct: 508 GGRAVEEVL 516
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.002
Identities = 114/770 (14%), Positives = 243/770 (31%), Gaps = 23/770 (2%)
Query: 242 LKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEA 301
+ E+ L Y + E +L E+ ++ S+Q E E+
Sbjct: 214 YQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLK 273
Query: 302 LARLETEREANIRQYQ-----QCLDKLSNMEKNISRAEAD---AVELSDRASKAEIEAQT 353
+ E + + + + + S + K R D E K E E +
Sbjct: 274 ENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKK 333
Query: 354 LKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQA 413
K ++ +E E + +K E LE E+ + + + +
Sbjct: 334 EKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKL 393
Query: 414 LGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLL 473
+ E K E + L +E+E L E ++ EE
Sbjct: 394 KEEELELK----------NEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETK 443
Query: 474 ERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLH 533
+ ELE K+ EL + + L E+L + +
Sbjct: 444 QGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKE 503
Query: 534 SQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQ 593
S++++ L L A +++ + + + + SA + + +
Sbjct: 504 SKAREGLAVLLALIKDGVGLRIISAAGRGGDLGVAVANYKVAISVAVIVEVSAVADEVDE 563
Query: 594 DEILSLRETIGKLEAEVELRVDQ--RNALQQEIYCLKEELNELNKKHQAMVEQVESVSLN 651
+ L T L A + +D + L+ + L + ++A +E E
Sbjct: 564 RQKLVRALTELPLPARTFVLLDPLLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDKRA 623
Query: 652 PENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVEL 711
G+ + + + E + V+L E L +L + L L
Sbjct: 624 KVVEGILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQ 683
Query: 712 EGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDAN 771
E ++ E + + +K ++ +L+ K+ + + + L
Sbjct: 684 EKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLE 743
Query: 772 AEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYL 831
+++ + + + EKS L + L + + K + EK E
Sbjct: 744 QKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKE--EKLKAQE 801
Query: 832 GLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYE 891
E L++ EL +Q + LA + L++ + E
Sbjct: 802 EELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLE 861
Query: 892 EELDKALDAQIEIFITQKY-IQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQ 950
EE+ K Q + ++ Q LK++ S + ++ +E + + LE + E +
Sbjct: 862 EEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIE 921
Query: 951 EEMRSLVDQIKVLRVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVT 1000
E + + + +LL + + + K E+++ ++ LL
Sbjct: 922 ERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKE 971
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 693 LLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQD---V 749
E+ L+ L++L EL +++++ L++ Q L E STL AE L +L +
Sbjct: 64 ARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQL 123
Query: 750 NENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDS 787
+ N +L +EN L L + E E L A+++ L+++
Sbjct: 124 SANAIELDEENRELREELAELKQENEALEAENERLQEN 161
|
Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198 |
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 47/268 (17%), Positives = 97/268 (36%), Gaps = 62/268 (23%)
Query: 539 ELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILS 598
+LRSL +L L+ + K+ + ++++ S E + +E L
Sbjct: 47 KLRSLLTKLSEALDKLRS----------YLPKLNPLREEKKKVSVKSLEELIKDVEEELE 96
Query: 599 LRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLS 658
K+E E++ ++ + L+ EI L++E+ L E + L+
Sbjct: 97 ------KIEKEIKELEEEISELENEIKELEQEIERL--------EPWGNFDLDLSLLLGF 142
Query: 659 ---------VKELQDENSKL-----KEVYERDRCEKVALL-----EKLEIMEKLLEKNAV 699
V E + E KL Y V ++ E + +E+ L+K
Sbjct: 143 KYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGF 202
Query: 700 LENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDE 759
L + + ++ ++E E + + + + E LK+L+ +
Sbjct: 203 ERLELEEEGT----PSELIREIKE--------------ELEEIEKERESLLEELKELAKK 244
Query: 760 NNFLVNSLFDAN-AEVEGLRAKSKSLED 786
+ +L++ E+E A SK L+
Sbjct: 245 YLEELLALYEYLEIELERAEALSKFLKT 272
|
Length = 646 |
| >gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 73/285 (25%), Positives = 114/285 (40%), Gaps = 59/285 (20%)
Query: 380 SALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEAL--ALQYQQCLEAISI 437
+A ++K + E + + K +AE VE L+ AL L E K +L A QYQQ ++
Sbjct: 21 TAPDEKQITQELEQAKAAKTPAQAEI-VEALQSALNWLEERKGSLERAKQYQQVIDNFPK 79
Query: 438 LEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQE 497
L + L +L+N + + N + LE + ++ SQ
Sbjct: 80 L----------SAELRQQLNNERDEPRSV--------PPNMST-DALEQEILQVSSQ--- 117
Query: 498 LTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDM 557
L EK ++ Q+E+ R E + L Q Q E R E++ R Q L
Sbjct: 118 LLEKSRQA-------QQEQDRAREISDSLSQL----PQQQTEARRQLNEIERRLQTLGTP 166
Query: 558 GT-----RNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVEL 612
T + +LQ E +K ++EL L+ S N Q E+ LR EL
Sbjct: 167 NTPLAQAQLTALQAESAALKAL---VDELELAQL-SANNRQ-ELARLR---------SEL 212
Query: 613 RVDQRNALQQEIYCLKEELNELNKKHQAMVEQ-VESVSLNPENFG 656
+ L + L+ N+LN + Q E+ +ES L E G
Sbjct: 213 AKKRSQQLDAYLQALR---NQLNSQRQREAERALESTELLAEQSG 254
|
Length = 1109 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.003
Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 7/244 (2%)
Query: 1170 KIADLSENLDKLGCINNELEEKVRLKDGKLEDV-------QMQNSLLKQSLEKSENELVA 1222
++A+L L+KL L+ ++R + LE++ + Q LK+ L E EL
Sbjct: 675 ELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQ 734
Query: 1223 IGCVRDQLNCEIANGKDLLSRKEKELFVAEQILCSLQNERTELHMKVEDLTCKYDEAKII 1282
+ ++L E+ ++ L ++ L E+ L SL+ +L ++E+L K +
Sbjct: 735 LQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEE 794
Query: 1283 QEDQGKQIRKLTEDYDCQIKETRCIHELNMKLEAELGKLLEELEGTRYREESLYHELEKE 1342
E+ +++ + D +E + + +LE E+ +L EE+E + + L ELE+
Sbjct: 795 LEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEEL 854
Query: 1343 RKHAGLWETQATELFSELQISSVCEVLRNEKAHELSRACENLEDRSNSNDIEINQLKEKA 1402
K + + EL +E + E+ EL LE EI +L+E+
Sbjct: 855 EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914
Query: 1403 NALE 1406
LE
Sbjct: 915 EELE 918
|
Length = 1163 |
| >gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.003
Identities = 67/313 (21%), Positives = 111/313 (35%), Gaps = 26/313 (8%)
Query: 256 GLLQYRQSLERLSNLESEVSHAREDSKGLSEQAS-----IAEAEVQTLKEALARLETERE 310
G +Y L+ L L + D LS+ + + + E+ + +AL +L+ R
Sbjct: 178 GEERYAALLDLLIQLRQPQLSKKPDEGVLSDALTEALPPLDDDELTDVADALEQLDEYR- 236
Query: 311 ANIRQYQQCLDKLSNMEKNISR-AEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAV 369
+ + + L N + R A + R A+ + L DL R E E A
Sbjct: 237 DELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAR 296
Query: 370 VKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQ 429
+ E ALE + A + E L++A + A A Q
Sbjct: 297 EEERELDARTEALEREADALRTR--LEALQGSPAYQDAEELERARADAEALQAAAADARQ 354
Query: 430 QCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKG----AEEKCLLLERSNQTLHSELE 485
EA S LE + R +EEA RL A + AE L + + +
Sbjct: 355 AIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAGLSPAHTAEPDAALAA 414
Query: 486 SMVQKMG------SQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDE 539
+Q++G + + ++ E L R R A+ A T ++ +DE
Sbjct: 415 QELQELGALDARRQDADRVIAQRSEQVALL------RRRDDVADRAEATHAAARAR-RDE 467
Query: 540 LRSLAAELQNRAQ 552
L A + RA+
Sbjct: 468 LDEEAEQAAARAE 480
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353 |
| >gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.003
Identities = 50/275 (18%), Positives = 94/275 (34%), Gaps = 32/275 (11%)
Query: 261 RQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEA-----------LARLETER 309
+ R + ES+ A ED+ +A A ++TL+E+ LA
Sbjct: 878 AEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAAL 937
Query: 310 EANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQ-----------TLKLDL 358
+ R+ + + L+ E+ RAE E + T L+
Sbjct: 938 ASGGRELPRLAEALATAEEARGRAEEKRAEADATLDERAEARDHAIGQLREFALTGLLED 997
Query: 359 ARIEAEKEAAVVK--YEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGK 416
A + E K E ++ E LL +D + +++ A++ E L++ L
Sbjct: 998 ALPDTEVPELDAKWTIEAALKVARRTEAALLQVADDDEALDRAANRISEEYLELRRTLAA 1057
Query: 417 LTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERS 476
L ++ + + + + + RL E+ L E + LLE
Sbjct: 1058 LGDDAQMEPADDGLVVSL--VYQGRPVTPAGLLARLEQEIAQRRELLTARERE--LLENH 1113
Query: 477 NQ-TLHSELESMVQKMGSQSQELTEKQKELGRLWT 510
Q + L+S++ Q + EL + T
Sbjct: 1114 LQGEIARHLQSLILAAERQVAAM---NTELAKRPT 1145
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353 |
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.003
Identities = 148/703 (21%), Positives = 274/703 (38%), Gaps = 112/703 (15%)
Query: 209 ENEQLQHNESYDIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLS 268
+ Q Q N+ K+R+ SE+ + + E + L+KL+ S
Sbjct: 197 DELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLK-----------------S 239
Query: 269 NLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEK 328
LES++ A+ E L+ L +LE + ++ Q ++ + + +E+
Sbjct: 240 QLESQLEEAK-------RSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELER 292
Query: 329 NISRAEADAVEL-----SDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALE 383
+S+A A+ + S+ A +AE + K +I +EAA E + +LE
Sbjct: 293 QLSKANAEIQQWRSKFESEGALRAEELEELKKKLNQKISELEEAA----EAANAKCDSLE 348
Query: 384 D---KLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEH 440
+L ED + + A+ A SE+E+ ++ K+ E + + Q L+ +
Sbjct: 349 KTKSRLQSELEDLQIELERANAAASELEKKQKNFDKILAEWKRKVDELQAELDT---AQR 405
Query: 441 KLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTE 500
+ E RL +EL+ +++ L R N+ L E+ + ++G + + E
Sbjct: 406 EARNLSTELFRLKNELEELKDQVEA-------LRRENKNLQDEIHDLTDQLGEGGRNVHE 458
Query: 501 KQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTR 560
+K RL E + EAE A + +E + L A++ +QI ++ R
Sbjct: 459 LEKARRRLEAEKDELQAALEEAEAALE---------LEESKVLRAQV-ELSQIRSEIERR 508
Query: 561 NQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNAL 620
+EE E + KN Q I S L+A +E +
Sbjct: 509 LAEKEEEFENTR-----------------KNHQRAIES-------LQATLEAEAKGKAEA 544
Query: 621 QQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEK 680
+ L+ ++NEL + N + + VKELQ + E ++ +
Sbjct: 545 SRLKKKLEGDINELEIALDHANKANAEAQKNVKKYQQQVKELQTQ-------VEEEQRAR 597
Query: 681 VALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALE-------EVCQNLLAEKS 733
E+L + E+ + LE L +L LE K E E L A+ S
Sbjct: 598 EDAREQLAVAER---RATALEAELEELRSALEQAERARKQAETELAEASERVNELTAQNS 654
Query: 734 TLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDN 793
+L+A+K L +L + +L + +E A A+ L + + ++ L+
Sbjct: 655 SLIAQKRKLEGELAALQSDLDEAVNELKAAEERAKKAQADAARLAEELRQEQEHSQHLER 714
Query: 794 EKSCLITERVNLVSQLDIA-RKGLKDLEKSYAELEGRYLGLEEEKESTLQ---------- 842
+ L ++ L +LD A LK +K +LE R LE E + +
Sbjct: 715 LRKQLESQVKELQVRLDEAEAAALKGGKKMIQKLEARVRELEAELDGEQRRHAETQKNLR 774
Query: 843 ----KVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQE 881
+V+ELQF ++ +K+ L + A +++ L+E
Sbjct: 775 KMERRVKELQFQVEEDKKNLERLQDLVDKLQAKIKTYKRQLEE 817
|
The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859 |
| >gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 56/343 (16%), Positives = 133/343 (38%), Gaps = 44/343 (12%)
Query: 286 EQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSD--R 343
+ ++ + LE E + +Y+ +++++ + A+ L R
Sbjct: 195 LRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR 254
Query: 344 ASKAEI--EAQTLKLDLARIEAEKEAAVVKYEE----------CSRMISALEDKLLHSEE 391
+ ++ E + L+ L IEA ++A + E ++ + + + L EE
Sbjct: 255 SEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQ-LQKEE 313
Query: 392 DSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQR 451
S++ ++ E + L ++L KL E + E + L A +++
Sbjct: 314 QSQQNQLTQEELEERDKELLESLPKLALPAEHVK-------EIAAELAEIDKPATTDSEI 366
Query: 452 LHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTC 511
H + + LE Q + EL+ ++ + +EL E+ E+ +
Sbjct: 367 PHRLSGSELTQ----------LEVLIQQVKRELQDAKSQLLKELRELEEELAEVDK---- 412
Query: 512 IQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKV 571
++ + +E L ++Q+EL AE++ + L+ + ++L++ +++
Sbjct: 413 ----KISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468
Query: 572 KEENKGLNELN--LSSAESIKNLQDEILS--LRETIGKLEAEV 610
++ EL ++ A+ K E L + +LE E+
Sbjct: 469 TKQKINAFELERAITIADKAKKTLKEFREKLLERKLQQLEEEI 511
|
This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1460 | |||
| PF07765 | 74 | KIP1: KIP1-like protein; InterPro: IPR011684 This | 100.0 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.94 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 99.93 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.92 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.9 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.73 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.72 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.7 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.69 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.69 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.66 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.57 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.52 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.48 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.45 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.39 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 99.39 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.34 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 99.27 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 99.05 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.9 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 98.82 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 98.81 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.75 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.75 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.72 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 98.68 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.66 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 98.65 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 98.62 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 98.61 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.58 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.57 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 98.57 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 98.57 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 98.41 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 98.39 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 98.38 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 98.33 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 98.31 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 98.2 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 98.15 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.14 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 98.12 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 98.11 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 98.07 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 98.03 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 98.03 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 98.03 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 98.0 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 97.97 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 97.97 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 97.95 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.9 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 97.84 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 97.83 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 97.8 | |
| KOG0976 | 1265 | consensus Rho/Rac1-interacting serine/threonine ki | 97.78 | |
| PF05622 | 713 | HOOK: HOOK protein; InterPro: IPR008636 This famil | 97.76 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 97.75 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 97.73 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 97.71 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 97.63 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 97.6 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 97.59 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 97.58 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 97.56 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 97.52 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 97.51 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 97.51 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.5 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.44 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 97.22 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 97.16 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 97.16 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 97.05 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 96.99 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 96.98 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 96.92 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 96.7 | |
| PF14662 | 193 | CCDC155: Coiled-coil region of CCDC155 | 96.67 | |
| PRK11637 | 428 | AmiB activator; Provisional | 96.66 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 96.63 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 96.62 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 96.61 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 96.56 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 96.45 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 96.36 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 96.32 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 96.1 | |
| KOG4593 | 716 | consensus Mitotic checkpoint protein MAD1 [Cell cy | 96.08 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 96.07 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 96.04 | |
| PRK11637 | 428 | AmiB activator; Provisional | 95.97 | |
| KOG1003 | 205 | consensus Actin filament-coating protein tropomyos | 95.97 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 95.92 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 95.92 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 95.89 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 95.73 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 95.65 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 95.39 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 95.38 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 95.26 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 95.25 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 95.25 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 95.13 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 95.09 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 95.05 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 94.88 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 94.82 | |
| KOG0963 | 629 | consensus Transcription factor/CCAAT displacement | 94.79 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 94.69 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 94.63 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 94.59 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 94.56 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 94.49 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 94.49 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 94.4 | |
| PF14915 | 305 | CCDC144C: CCDC144C protein coiled-coil region | 94.39 | |
| KOG1003 | 205 | consensus Actin filament-coating protein tropomyos | 94.26 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 94.13 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 94.11 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 93.97 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 93.47 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 93.18 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 93.08 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 93.02 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 92.94 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 92.88 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 92.6 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 92.56 | |
| PRK09039 | 343 | hypothetical protein; Validated | 92.43 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 92.38 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 92.3 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 92.2 | |
| PF07111 | 739 | HCR: Alpha helical coiled-coil rod protein (HCR); | 92.07 | |
| PF10267 | 395 | Tmemb_cc2: Predicted transmembrane and coiled-coil | 92.01 | |
| PF15397 | 258 | DUF4618: Domain of unknown function (DUF4618) | 91.93 | |
| PF00769 | 246 | ERM: Ezrin/radixin/moesin family; InterPro: IPR011 | 91.78 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 91.66 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 91.51 | |
| PF09787 | 511 | Golgin_A5: Golgin subfamily A member 5; InterPro: | 91.08 | |
| PF13514 | 1111 | AAA_27: AAA domain | 90.91 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 90.85 | |
| COG3883 | 265 | Uncharacterized protein conserved in bacteria [Fun | 90.44 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 90.32 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 90.24 | |
| PRK09039 | 343 | hypothetical protein; Validated | 89.24 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 89.12 | |
| KOG1853 | 333 | consensus LIS1-interacting protein NUDE [Cytoskele | 88.89 | |
| KOG4302 | 660 | consensus Microtubule-associated protein essential | 88.46 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 87.81 | |
| PF15397 | 258 | DUF4618: Domain of unknown function (DUF4618) | 87.6 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 87.14 | |
| PF14073 | 178 | Cep57_CLD: Centrosome localisation domain of Cep57 | 86.93 | |
| PF00769 | 246 | ERM: Ezrin/radixin/moesin family; InterPro: IPR011 | 86.51 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 86.25 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 86.22 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 86.18 | |
| KOG0982 | 502 | consensus Centrosomal protein Nuf [Cell cycle cont | 86.11 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 86.1 | |
| PF15254 | 861 | CCDC14: Coiled-coil domain-containing protein 14 | 86.04 | |
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 85.97 | |
| PF04111 | 314 | APG6: Autophagy protein Apg6; InterPro: IPR007243 | 85.77 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 85.33 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 84.98 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 84.75 | |
| PRK15422 | 79 | septal ring assembly protein ZapB; Provisional | 84.65 | |
| KOG1937 | 521 | consensus Uncharacterized conserved protein [Funct | 84.58 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 84.5 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 84.49 | |
| PRK10929 | 1109 | putative mechanosensitive channel protein; Provisi | 84.41 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 84.34 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 83.83 | |
| PF12777 | 344 | MT: Microtubule-binding stalk of dynein motor; Int | 83.67 | |
| KOG4360 | 596 | consensus Uncharacterized coiled coil protein [Fun | 83.54 | |
| PF04012 | 221 | PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T | 82.96 | |
| PF04111 | 314 | APG6: Autophagy protein Apg6; InterPro: IPR007243 | 82.9 | |
| PF06008 | 264 | Laminin_I: Laminin Domain I; InterPro: IPR009254 L | 82.83 | |
| COG4477 | 570 | EzrA Negative regulator of septation ring formatio | 82.38 | |
| COG3074 | 79 | Uncharacterized protein conserved in bacteria [Fun | 81.41 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 81.08 | |
| PF15294 | 278 | Leu_zip: Leucine zipper | 80.72 | |
| PF04012 | 221 | PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T | 80.43 | |
| PF10481 | 307 | CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 | 80.43 |
| >PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=290.78 Aligned_cols=74 Identities=85% Similarity=1.444 Sum_probs=73.6
Q ss_pred ccccccCCCCCCCchHHhhHhhHHHHHHHHHHHhhhccchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHhh
Q 000499 14 SWWWDSHISPKNSKWLQENLTDMDVKVKQMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYD 87 (1460)
Q Consensus 14 swww~sh~~~~~s~wl~~~l~dm~~~vk~~l~li~ed~dsfakrAemyykkRpeLi~~vee~yr~yr~LAeryd 87 (1460)
||||||||+|++||||+.||+|||.|||+||++|++||||||+||||||+|||+||++|+||||+||+||||||
T Consensus 1 swww~sHi~~~~skWL~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD 74 (74)
T PF07765_consen 1 SWWWDSHISPKQSKWLQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD 74 (74)
T ss_pred ChhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998
|
They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo []. |
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-14 Score=181.04 Aligned_cols=1131 Identities=21% Similarity=0.212 Sum_probs=568.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHH
Q 000499 229 SERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETE 308 (1460)
Q Consensus 229 sER~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~E 308 (1460)
+.-+..+..|+..|...+..+.+++..........-.-.+.|=..-+..|+.-..|- ....-.++.+..+..+
T Consensus 72 ~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~-------~~le~~~~ele~l~~~ 144 (1822)
T KOG4674|consen 72 SRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLM-------ELLERQKAELEALESE 144 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 334567777888888888777777766655555444444444333333332222222 2222223333333333
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHh
Q 000499 309 REANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRM----ISALED 384 (1460)
Q Consensus 309 kea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~----IS~LE~ 384 (1460)
-..-..|.++.-.+++.++..+...+.+.-.+.-+-.+.+.+...|-.+..-+..+--+..-.|.---.. ++.|++
T Consensus 145 n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~ 224 (1822)
T KOG4674|consen 145 NKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEE 224 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3344446666667777787777776666655655666667777776666666655444443333322223 677777
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHH
Q 000499 385 KLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEA-------LALQYQQCL---EAISI-LEHKLARAEEEAQRLH 453 (1460)
Q Consensus 385 ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekea-------l~l~~qq~~---~kI~~-LE~els~sQEEv~RL~ 453 (1460)
++..+..+...+.....-+......|.+.|..+....-. ....|..-. .+|.. +....+....+++-|.
T Consensus 225 ~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~ 304 (1822)
T KOG4674|consen 225 KLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQ 304 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666665444444444444443322222221 222222111 11111 1222223344444455
Q ss_pred HHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-----------------
Q 000499 454 SELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEER----------------- 516 (1460)
Q Consensus 454 ~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~----------------- 516 (1460)
..|......|.+++.+|-... +.+..--+++.+......++|++|...+.+-.
T Consensus 305 ~~i~~~~klled~~~~~~e~~----------d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~~a 374 (1822)
T KOG4674|consen 305 RAIEELEKLLEDASERNKENT----------DQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEKAA 374 (1822)
T ss_pred HHHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhHHH
Confidence 666666666666666543221 11222222222333333345555555544431
Q ss_pred --HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchH----hH---HHHHHHHHHHhccCcccccccHH
Q 000499 517 --LRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQ----SL---QEEVEKVKEENKGLNELNLSSAE 587 (1460)
Q Consensus 517 --~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~----~L---~eev~~l~EEn~~L~e~n~SS~~ 587 (1460)
.+++-....|..+-.-+...|+++..+..+++.+.-.|+..-..-. -| -.++.+.++.+..+++..-.+.-
T Consensus 375 ~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q 454 (1822)
T KOG4674|consen 375 LASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQ 454 (1822)
T ss_pred HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334444445555556688888888888877666554322111 11 13333444444444444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccch-----------h
Q 000499 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENF-----------G 656 (1460)
Q Consensus 588 sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~-----------~ 656 (1460)
-|.+++.++..|+-....+..|+-.-.-.-..|++.+.++-.+++.+...+-....+.+ +.+++- =
T Consensus 455 ~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~---~~~es~S~~iIse~Lv~F 531 (1822)
T KOG4674|consen 455 KIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDS---TENESDSEEIISERLVEF 531 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccc---cccCccHHHHHHHHHHHh
Confidence 68888888888888887777777766666677777777777777777776655555443 222221 2
Q ss_pred hhHHHHHHHhhhhHHHHHHhHHHHHHHHHH--------HHH-HHHHHHHHHHHhhhhhhhhHhhh-------hHHHH---
Q 000499 657 LSVKELQDENSKLKEVYERDRCEKVALLEK--------LEI-MEKLLEKNAVLENSLSDLNVELE-------GVRDK--- 717 (1460)
Q Consensus 657 ~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~k--------Lq~-mekLlEkns~LE~SLSdan~ELe-------gLReK--- 717 (1460)
..|.+||+.|..|...+..+.+...+---. ++. ..++.++.+-|++.+-....-++ -+|..
T Consensus 532 ~nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~ 611 (1822)
T KOG4674|consen 532 SNINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAE 611 (1822)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 457899999999998777766544332211 111 33445555555544444333222 22222
Q ss_pred --------------------------HHHHHHHHHHHH-----------HhhhhhhhhHHHHHhhhhHHHHHHHhhhhhh
Q 000499 718 --------------------------VKALEEVCQNLL-----------AEKSTLVAEKNSLFSQLQDVNENLKKLSDEN 760 (1460)
Q Consensus 718 --------------------------~K~LEesc~sL~-----------~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekn 760 (1460)
+..|+.-..+++ .+...|..|..++=++|....-....-.+++
T Consensus 612 ~e~~~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekl 691 (1822)
T KOG4674|consen 612 LEDSHQLKPNSSALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKL 691 (1822)
T ss_pred ccccccCCCCchhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 122222222222 2222244444444455555555555555566
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHH
Q 000499 761 NFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKEST 840 (1460)
Q Consensus 761 s~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~ 840 (1460)
..|++.+-..+.|.+.|+..-+.|.......+.....+..++..--+.+..+...+.+|+.+..=+-.--..|..|.+++
T Consensus 692 e~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l 771 (1822)
T KOG4674|consen 692 ENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKL 771 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666655555555555555555555554443333333344444444
Q ss_pred HHHHHHHH-------HhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHH
Q 000499 841 LQKVEELQ-------FSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQD 913 (1460)
Q Consensus 841 ~~~veel~-------~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~AqieifiLq~~l~D 913 (1460)
+..+..++ .+...-.+-..+-...=+.+|-+|+..+..|..+ ++.|..|
T Consensus 772 ~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~k------------------------lq~~~~~ 827 (1822)
T KOG4674|consen 772 SAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKK------------------------LQEKSSD 827 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHH
Confidence 43333333 2222222222222233333333333333333222 5555555
Q ss_pred HHhhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhcccCCCcch
Q 000499 914 LKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEI--------LEIDADHGCETK 985 (1460)
Q Consensus 914 l~~kn~~ll~EcQk~~eas~~se~lIseLe~E~~~~q~e~~~L~~~~~~Lr~gi~qv~k~--------L~i~~~~g~~d~ 985 (1460)
+..-+..+=.. +.. +-.+|..++.++.....++..+...+.+|...+...-+. ++++++--..|.
T Consensus 828 ~r~l~~~~~~~---l~~----~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~ 900 (1822)
T KOG4674|consen 828 LRELTNSLEKQ---LEN----AQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDA 900 (1822)
T ss_pred HHHHHhhhhhH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhh
Confidence 55332222111 011 223333444444444444444444444444444444333 333332113343
Q ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhh
Q 000499 986 MEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQRE 1065 (1460)
Q Consensus 986 ~~~e~~l~~~l~~i~~~i~~l~~s~~~~q~enq~~~vEnsvL~t~L~ql~~e~~~L~~Ek~~L~~E~~~~s~q~l~Lq~e 1065 (1460)
...+. .|.....++.+++..+-.+.-.-.+.-....+.-+.|.+........+ ..++..++........|..+
T Consensus 901 ~~~~~----~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~---~~~ea~ie~~~~k~tslE~~ 973 (1822)
T KOG4674|consen 901 TILED----TLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR---LELEAKIESLHKKITSLEEE 973 (1822)
T ss_pred hhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHH
Confidence 33333 477778888888888888877777777777777777777777666655 44556666666666666666
Q ss_pred hhhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHhHHH--------------HHHhHhhhhhh-------hhhhhh
Q 000499 1066 FPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGA--------------QQSLQDQNCKV-------LDEKKS 1124 (1460)
Q Consensus 1066 ~~eLle~n~qL~~~~~~~~~ree~lk~E~~~l~~~l~~l~~s--------------~~~lq~e~~~~-------~~e~~s 1124 (1460)
...|..-+.+|+..+.--..-+ ..+...+.++++-++.- ...++.++-+. ...|++
T Consensus 974 ls~L~~~~~~l~~e~~~~~k~~---e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~ 1050 (1822)
T KOG4674|consen 974 LSELEKEIENLREELELSTKGK---EDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYES 1050 (1822)
T ss_pred HHHHHHHHHHHHHHHhccccch---hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555554432111111 11222333333333332 23333333332 334444
Q ss_pred HHHHhhhhHHhhhhhhhhhhhHHHHHhhhccchhhhhhhHHHHHHHHHHHHHhHhhhhcchhhHHHHHHHhhhhhhHHHH
Q 000499 1125 LMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKLEDVQM 1204 (1460)
Q Consensus 1125 L~k~~~~l~e~~~~lEden~~~l~E~i~~~~ls~~~~~~~~Ek~~~l~~L~e~l~~L~~~~~eL~~~v~~l~~kle~~e~ 1204 (1460)
=...+.++..++..+..++..+-.+.-.|.-. ....-..+.+..+........|.++|....++..+++.
T Consensus 1051 el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~----------~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~ 1120 (1822)
T KOG4674|consen 1051 ELVQHADLTQKLIKLREEFAKCNDELLKLKKS----------RESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEK 1120 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------HHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555544443332211 11111122233334455566788888899999999999
Q ss_pred hhHHHHHHHHhhHHHHHh-hhhhhhhhhhHhhhhhhhhhhhhHHHHHH-----HHHHHhhhHhhHHHHHHHhhhhhhhhh
Q 000499 1205 QNSLLKQSLEKSENELVA-IGCVRDQLNCEIANGKDLLSRKEKELFVA-----EQILCSLQNERTELHMKVEDLTCKYDE 1278 (1460)
Q Consensus 1205 en~~Lk~~le~~~~eL~~-~~s~~~~l~~ei~~~~~~l~qkd~ellea-----e~~~~~~~~~~~El~~~ve~Lk~~~ee 1278 (1460)
.|.-|..-|+.+...... ..|....-..++.+.--.| +++.+++.. ..-...+......+|++|.||.-....
T Consensus 1121 qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~L-R~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~ 1199 (1822)
T KOG4674|consen 1121 QNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFL-RKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTA 1199 (1822)
T ss_pred HHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHH-HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888877776665432 1111111111222211111 223332222 222334556667788888888877766
Q ss_pred hHhHH----------hhhhhhHHhhh---hhhhhhhhhHHhHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhh
Q 000499 1279 AKIIQ----------EDQGKQIRKLT---EDYDCQIKETRCIHELNMKLEAELGKLLEELEGTRYREESLYHELEKERKH 1345 (1460)
Q Consensus 1279 a~~i~----------e~~ekqi~~Ls---~~~~~q~~Ei~~l~e~N~~Le~e~~~L~~E~~~~k~rEe~L~~elq~~~~e 1345 (1460)
.++-. .++=+++..+. +.+..=+++....-+-++.|+..+.+|+.++--+..+=..|..+++...++
T Consensus 1200 ~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ae 1279 (1822)
T KOG4674|consen 1200 ERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAE 1279 (1822)
T ss_pred HHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHH
Confidence 55543 11112222222 333333444444444444455555555555555555444455555554444
Q ss_pred HhhhHHHHHHHHhhhh-HHHHHHHHHhhhhHHHHHHHhhhhhhccchhhhHHHHHHHHhhhhhhhhhhhhhhhhhhhHHH
Q 000499 1346 AGLWETQATELFSELQ-ISSVCEVLRNEKAHELSRACENLEDRSNSNDIEINQLKEKANALECENGGLKAHLAASIPAVI 1424 (1460)
Q Consensus 1346 ~el~E~ea~~l~~dlq-~ssv~e~L~eekv~El~~~ce~Le~~~~~k~~ei~~Lkerv~~le~En~~Lk~~Lsay~~~i~ 1424 (1460)
....+.++...-.--| +..-..-.-.+-+..|...|.+|+..-..+...|..++.+++-+. ...+-++.+...-+.
T Consensus 1280 l~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld~l~~e~~ 1356 (1822)
T KOG4674|consen 1280 LKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLDELNNEKA 1356 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4443333322111000 000001111233456677788888877777777777777666666 444555555555556
Q ss_pred hhhHhHHhhh
Q 000499 1425 SLKDSIRSLE 1434 (1460)
Q Consensus 1425 sL~d~i~~LE 1434 (1460)
.+.+.|..|+
T Consensus 1357 ~lt~~~~ql~ 1366 (1822)
T KOG4674|consen 1357 NLTKELEQLE 1366 (1822)
T ss_pred HHHHHHHHHH
Confidence 6555555553
|
|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-14 Score=183.84 Aligned_cols=1087 Identities=19% Similarity=0.195 Sum_probs=584.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000499 232 MGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREA 311 (1460)
Q Consensus 232 ~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea 311 (1460)
-.++...-..++..+..++-|-|-....|..-.+++....-.|..+-.+.-.-+.-.+....+.....+.+..++.+-+.
T Consensus 386 Ltk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~ 465 (1822)
T KOG4674|consen 386 LTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELES 465 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777778888999999999999999999999999888887777655544433433444455777777777777888777
Q ss_pred HHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHH---HHHHHHHhhhh
Q 000499 312 NIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDL-ARIEAEKEAAVVKYEECS---RMISALEDKLL 387 (1460)
Q Consensus 312 ~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel-~~l~~EKEa~~lqyqQcL---E~IS~LE~ki~ 387 (1460)
+..+++.|.--+--|+-.++..+..+.++-.+...+..=........ .......+.. |-.=| .=|-.|+.+=.
T Consensus 466 l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~~~~es~S~~i---Ise~Lv~F~nI~eLqekN~ 542 (1822)
T KOG4674|consen 466 LKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDSTENESDSEEI---ISERLVEFSNINELQEKNV 542 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccCccHHHH---HHHHHHHhccHHHHHHHHH
Confidence 77777777777777777777777777666544444433333322222 1111111111 11111 11222222211
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHH
Q 000499 388 HSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAE 467 (1460)
Q Consensus 388 ~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE 467 (1460)
.+=.-++.|.+.++..+.+. . ..-...+..-.....++|..|+..+.+.-.-+..|-.+.+.....+-++|
T Consensus 543 eLL~~vR~Lae~lE~~E~~~---~------~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e 613 (1822)
T KOG4674|consen 543 ELLNAVRELAEKLEAAEKTQ---D------KTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELE 613 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhhh---h------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 11112222222222222221 1 11111233333445566666666666666666666666666655555555
Q ss_pred HHH-h--------------HHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000499 468 EKC-L--------------LLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHL 532 (1460)
Q Consensus 468 ~~~-~--------------~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~L 532 (1460)
... . .++..+..|..+++...... ..-+.-.+.+++.|+..+.+= -..+-.+.+-
T Consensus 614 ~~~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~---~~~~~~l~e~~~~l~~ev~~i-------r~~l~k~~~~ 683 (1822)
T KOG4674|consen 614 DSHQLKPNSSALDQTEAPRAKEKRLRQLENELESYKKEK---RENLKKLQEDFDSLQKEVTAI-------RSQLEKLKNE 683 (1822)
T ss_pred ccccCCCCchhhcccccchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHH
Confidence 441 0 01333333333333222111 111222233333333333331 1112222222
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 533 HSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVEL 612 (1460)
Q Consensus 533 hSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~ 612 (1460)
..-+.+....|...|....+.+..+..++..|+..|.+++..++.+...-.++-.-++.+-.|+++||.-..-+-.=-.+
T Consensus 684 ~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~r 763 (1822)
T KOG4674|consen 684 LNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEER 763 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234888999999999999999999999999999999988888777766777667888888888888766655444444
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH---
Q 000499 613 RVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI--- 689 (1460)
Q Consensus 613 ~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~--- 689 (1460)
=+.+.+.|..+.+.+.-....|...+-.+...-.... ..+.+.+++|+...+.|+........+-..|...+--
T Consensus 764 L~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k---~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~ 840 (1822)
T KOG4674|consen 764 LSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATK---DKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLE 840 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4567777777777777666666665544444333332 2345677777777777776655555544444433321
Q ss_pred -----HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhh
Q 000499 690 -----MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLV 764 (1460)
Q Consensus 690 -----mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE 764 (1460)
++.+--.+.-+-.+++.+-..++.+-.++..|+.-..+.+-...++.+. +-+...-+...+|...+++.+.|.
T Consensus 841 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~--~~~~d~~~~~~~Lr~~~eq~~~l~ 918 (1822)
T KOG4674|consen 841 NAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSK--SSNEDATILEDTLRKELEEITDLK 918 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc--chhhhhhhhhHHHHHHHHHHHHHH
Confidence 1222223444444555555556666666666666666666665555532 111122222234777899999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHH-------
Q 000499 765 NSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEK------- 837 (1460)
Q Consensus 765 ~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek------- 837 (1460)
..|-++..+.......+...+.++...+..+..+. ..+...+.........++.+..+|+++..++..+.
T Consensus 919 ~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~---~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~ 995 (1822)
T KOG4674|consen 919 EELTDALSQIREYQEEYSSLEQSLESVKSELDETR---LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGK 995 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999999999999988888877776665 66777777777777777777777777777777666
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 000499 838 ESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEK 917 (1460)
Q Consensus 838 ~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~AqieifiLq~~l~Dl~~k 917 (1460)
+....+.-.-..++.-+.+.|.....=....+..+-+.+-..-+..+--...|+.+.-. ---+-.-|.++..-
T Consensus 996 e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~-------ha~~~q~l~kl~ee 1068 (1822)
T KOG4674|consen 996 EDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQ-------HADLTQKLIKLREE 1068 (1822)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 33344444445555556555555444444444444444333333333334444444322 22344556667777
Q ss_pred hhhhHHHHHHHHHhhhhHHHHHHHHHhhhhh----HHHH-------HHHHHHHHHHHHHHHHHHHHHHhhcc--cCCCcc
Q 000499 918 NFSLLFECQKLLQESSLSEKLIHKLENENCE----QQEE-------MRSLVDQIKVLRVQLYQLLEILEIDA--DHGCET 984 (1460)
Q Consensus 918 n~~ll~EcQk~~eas~~se~lIseLe~E~~~----~q~e-------~~~L~~~~~~Lr~gi~qv~k~L~i~~--~~g~~d 984 (1460)
++....|..++-.-.....-+.++++.-.-+ ...+ ...|..+|..|... +..+.-.. .+|+.+
T Consensus 1069 ~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~q----ie~~s~~~~~~n~S~~ 1144 (1822)
T KOG4674|consen 1069 FAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQ----FEELSQQSAVSNLSAM 1144 (1822)
T ss_pred HHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhhcccccc
Confidence 7777777666655555555555554433322 2222 23333333333332 22222221 245555
Q ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHH---HHHHHHHH
Q 000499 985 KMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFR---IQSEQFVV 1061 (1460)
Q Consensus 985 ~~~~e~~l~~~l~~i~~~i~~l~~s~~~~q~enq~~~vEnsvL~t~L~ql~~e~~~L~~Ek~~L~~E~~---~~s~q~l~ 1061 (1460)
.....+ |+-+|..|.++..-+-.-+..++-+|-.+--..+.+-..+..+ ..--+..+..++ .-..++--
T Consensus 1145 ~~g~sd-L~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL-------~~sL~~~r~~~q~~a~s~~e~~~ 1216 (1822)
T KOG4674|consen 1145 LLGLSD-LQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDL-------QRSLTAERASSQKSAVSDDEHKE 1216 (1822)
T ss_pred ccchHH-HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhccchhhhhhhhH
Confidence 444333 5567777777777666666666666655555555544444444 333333333331 11122222
Q ss_pred hhhh---hhhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHhHHHHHHhHhhhh-------hhhhhhhhHHHHhhh
Q 000499 1062 LQRE---FPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNC-------KVLDEKKSLMKKVLD 1131 (1460)
Q Consensus 1062 Lq~e---~~eLle~n~qL~~~~~~~~~ree~lk~E~~~l~~~l~~l~~s~~~lq~e~~-------~~~~e~~sL~k~~~~ 1131 (1460)
+.++ ..-|.+-|..||.+......+-..|..++..+...+..||.....++.++. ++=.++.--.+.+++
T Consensus 1217 i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~ 1296 (1822)
T KOG4674|consen 1217 ILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQD 1296 (1822)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 334557788888888888888777777766666666666666666655554 455555556677888
Q ss_pred hHHhhhhhhhhhhhHHHHHhhhccchhhhhhhHHHHHHHHHHHHHhHhhhhcchhhHHHHHHHhhhhhhHHHHhhHHHHH
Q 000499 1132 LQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQ 1211 (1460)
Q Consensus 1132 l~e~~~~lEden~~~l~E~i~~~~ls~~~~~~~~Ek~~~l~~L~e~l~~L~~~~~eL~~~v~~l~~kle~~e~en~~Lk~ 1211 (1460)
|.++|...+-..+.=+. .++..|.+.+......+.+|..++..+. +......++++.
T Consensus 1297 L~~k~k~~d~~~~~kL~--------------------~ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld~l~~ 1353 (1822)
T KOG4674|consen 1297 LLEKYKDSDKNDYEKLK--------------------SEISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLDELNN 1353 (1822)
T ss_pred HHHHhhcCCHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 88887766654444221 1444455555544445555554444443 222222233333
Q ss_pred HHHhhHHHHHhhhhhhhhhhhHhhhhhhhhhhhhHHHHHHHHHHHhhhHhhHHHHHHHhhhhhhhhhhHhHHhhhhhhHH
Q 000499 1212 SLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILCSLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIR 1291 (1460)
Q Consensus 1212 ~le~~~~eL~~~~s~~~~l~~ei~~~~~~l~qkd~elleae~~~~~~~~~~~El~~~ve~Lk~~~eea~~i~e~~ekqi~ 1291 (1460)
-...+.+.+..++.+...|.... .|+|..+-+|..+-....-++++.-++.-
T Consensus 1354 e~~~lt~~~~ql~~~~~rL~~~~----------------------------~e~~~q~~el~~~~~~~~~~~e~t~rk~e 1405 (1822)
T KOG4674|consen 1354 EKANLTKELEQLEDLKTRLAAAL----------------------------SEKNAQELELSDKKKAHELMQEDTSRKLE 1405 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444333222 23333333333333333333333333332
Q ss_pred hh------hhhhhhhhhhHHhHHHhhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhHhhhHHHHHHHHhhhhHHHH
Q 000499 1292 KL------TEDYDCQIKETRCIHELNMKLEAELGKLLEELEGTRYREESLYHELEKERKHAGLWETQATELFSELQISSV 1365 (1460)
Q Consensus 1292 ~L------s~~~~~q~~Ei~~l~e~N~~Le~e~~~L~~E~~~~k~rEe~L~~elq~~~~e~el~E~ea~~l~~dlq~ssv 1365 (1460)
++ +..+..-.+++.-.+.-=.++++++.....|.-+.+-+++. +.-++...++.........-.-|..--+
T Consensus 1406 ~~~~k~~~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k~~~~--~~~e~~~~~i~~~~e~~~~~~~~~~~~~- 1482 (1822)
T KOG4674|consen 1406 KLKEKLELSEELESLKEELEELQQLQATLQSETEAITKELFEAKKEEEK--STTERLLEEIKKLLETVRKKTVDADSKS- 1482 (1822)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 22 22223333344444444445555555555555555555554 2223333333333333332222222111
Q ss_pred HHHHHhhhhHHHHHHHhhhhhhccchhhhHHHHHHHHhh---hhhhhhhhhhhhhhhhhHH
Q 000499 1366 CEVLRNEKAHELSRACENLEDRSNSNDIEINQLKEKANA---LECENGGLKAHLAASIPAV 1423 (1460)
Q Consensus 1366 ~e~L~eekv~El~~~ce~Le~~~~~k~~ei~~Lkerv~~---le~En~~Lk~~Lsay~~~i 1423 (1460)
.=+++--.++..+-+.+..+......++-++..|++. |+.+|++++.+|...+-.-
T Consensus 1483 --~~le~~k~e~~~e~e~~~~~~~~~~~E~lk~r~Rl~~eeq~~~~I~rl~~eLe~~~~~~ 1541 (1822)
T KOG4674|consen 1483 --ENLEGTKKELESEKEELKQRLTELAAENLKLRSRLAKEEQYQKEISRLKEELESTKEAK 1541 (1822)
T ss_pred --HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1123333444444555555555555555555555543 3445555555555544443
|
|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-12 Score=172.16 Aligned_cols=764 Identities=21% Similarity=0.234 Sum_probs=376.6
Q ss_pred HHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHH---
Q 000499 322 KLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINK--- 398 (1460)
Q Consensus 322 ~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~--- 398 (1460)
.+..+..++...++....+.....+++.++..++..+..+...-.-....|..--..|+.|+.++...++...+++.
T Consensus 909 ~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk 988 (1930)
T KOG0161|consen 909 ELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKK 988 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555566666666666665555443322222222222223455555555554444444443
Q ss_pred -----------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000499 399 -----------VADKAESEVERLKQALGKLTEEKEALALQYQQC-------LEAISILEHKLARAEEEAQRLHSELDNGF 460 (1460)
Q Consensus 399 -----------~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~-------~~kI~~LE~els~sQEEv~RL~~Ei~~~~ 460 (1460)
.+.-.+.++..|.+.+.++....+.+...+.+- ..+...++.++...|+.+.-++...+...
T Consensus 989 ~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~ 1068 (1930)
T KOG0161|consen 989 ELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELD 1068 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333445555555555556666555555555433 33333444444444444433333333333
Q ss_pred hhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Q 000499 461 AKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDEL 540 (1460)
Q Consensus 461 ~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~ 540 (1460)
..| ...+.+...+++.++.....+....+.+.+.+..|..|...++.++..+..++.+...|..-....++++
T Consensus 1069 ~~l-------~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1069 NQL-------KKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred HHH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3345556777777777777777777777777777888888888888888888877777422211111111
Q ss_pred ----HHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000499 541 ----RSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQ 616 (1460)
Q Consensus 541 ----~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~e 616 (1460)
.....-++.....=.++..-+.+|+++...+...+..+... ...++..+.+.+..++....+++.+
T Consensus 1142 ee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~---~~~~~~el~~qle~l~~~k~~leke------- 1211 (1930)
T KOG0161|consen 1142 EEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKK---HADSLAELQEQLEQLQKDKAKLEKE------- 1211 (1930)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 11111111111111112222233333333333333333322 2235666666666666655555443
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHH-------HHHhHHHHHHHHHHHHH
Q 000499 617 RNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEV-------YERDRCEKVALLEKLEI 689 (1460)
Q Consensus 617 k~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~-------~s~~~~EK~~L~~kLq~ 689 (1460)
|.-||.++..+..+++.+...-.....-. ..+...+.++|..+..+... ++....|-.-+..+|..
T Consensus 1212 k~~lq~e~~~l~~ev~~~~~~k~~~e~~~-------k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee 1284 (1930)
T KOG0161|consen 1212 KSDLQREIADLAAELEQLSSEKKDLEKKD-------KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEE 1284 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHH
Confidence 23444444444333333332211111100 01112333333333333332 22222222222222222
Q ss_pred HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhh
Q 000499 690 MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFD 769 (1460)
Q Consensus 690 mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd 769 (1460)
.+. +.+-+-+..+.+...|+.++..+-.=--.-..|.+....+..|.+.|-.| ++.=.+-...|...+|+
T Consensus 1285 ~e~---~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~-------leee~e~~~~l~r~lsk 1354 (1930)
T KOG0161|consen 1285 AEA---KLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQ-------LEEEQEAKNELERKLSK 1354 (1930)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 211 11112222222222222222222221112222222222333333333333 33335556677888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHH
Q 000499 770 ANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQF 849 (1460)
Q Consensus 770 ~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~ 849 (1460)
++++....+.|..+.-..+....+ ..+..+...+...++.+....-.+..++.-...++.|-..+.-+++..+.
T Consensus 1355 ~~~e~~~~~~k~e~~~~~~~eele------e~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~ 1428 (1930)
T KOG0161|consen 1355 ANAELAQWKKKFEEEVLQRLEELE------ELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRA 1428 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 888888888888887666333221 23333333444444444444444444444444444444333333333322
Q ss_pred hHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHH-------HHHHHHhhhhhhH
Q 000499 850 SLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQK-------YIQDLKEKNFSLL 922 (1460)
Q Consensus 850 sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~AqieifiLq~-------~l~Dl~~kn~~ll 922 (1460)
....-.+++ +-.++.+++.-...--++.+ ++..++..-+...++|-+.+ -++.+...|=.+.
T Consensus 1429 ~~~~le~k~----k~f~k~l~e~k~~~e~l~~E-------ld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~ 1497 (1930)
T KOG0161|consen 1429 AVAALEKKQ----KRFEKLLAEWKKKLEKLQAE-------LDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLS 1497 (1930)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211111111 11223333333332222222 22333333333334444333 4555666788888
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccCC---------Ccchhhhhhhh
Q 000499 923 FECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQL-LEILEIDADHG---------CETKMEQDQSH 992 (1460)
Q Consensus 923 ~EcQk~~eas~~se~lIseLe~E~~~~q~e~~~L~~~~~~Lr~gi~qv-~k~L~i~~~~g---------~~d~~~~e~~l 992 (1460)
.+|..+...-.=..+-+.+|+...+-.++++.-|...+.-+-.+..-. .+.|+++...+ -.+...+-+.+
T Consensus 1498 ~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~ 1577 (1930)
T KOG0161|consen 1498 QEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEEL 1577 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 888888888888888888888888888877777766666555542110 01111111111 10000000000
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHhhhHHHHHHHHHHHHH-------HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhh
Q 000499 993 QTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVAL-------LGQLKLEAENLATERNALAEEFRIQSEQFVVLQRE 1065 (1460)
Q Consensus 993 ~~~l~~i~~~i~~l~~s~~~~q~enq~~~vEnsvL~t~-------L~ql~~e~~~L~~Ek~~L~~E~~~~s~q~l~Lq~e 1065 (1460)
..-.+. .|..++.++. + -.--++-.+++ +..+..-.....-.+-.+-+-+.....+.-.||..
T Consensus 1578 rk~~~~---~i~~~q~~Le-~------E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~ 1647 (1930)
T KOG0161|consen 1578 RKNLQR---QLESLQAELE-A------ETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRE 1647 (1930)
T ss_pred HHHHHH---HHHHHHHhhh-H------HHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHH
Confidence 000000 0111111111 0 00112333333 33333333444444445556666677777788888
Q ss_pred hhhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhhhhhhhHHHHhhhhHHhhhhhhhhhhh
Q 000499 1066 FPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCV 1145 (1460)
Q Consensus 1066 ~~eLle~n~qL~~~~~~~~~ree~lk~E~~~l~~~l~~l~~s~~~lq~e~~~~~~e~~sL~k~~~~l~e~~~~lEden~~ 1145 (1460)
.....-.+++++..+..-..|-..+.+|++.|...+..+-.+.+.+..|.--+.+....+......+...+..+|.+..+
T Consensus 1648 ~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~ 1727 (1930)
T KOG0161|consen 1648 LEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQ 1727 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999988888888888888888888888888887
Q ss_pred H
Q 000499 1146 M 1146 (1460)
Q Consensus 1146 ~ 1146 (1460)
+
T Consensus 1728 l 1728 (1930)
T KOG0161|consen 1728 L 1728 (1930)
T ss_pred H
Confidence 3
|
|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-12 Score=168.61 Aligned_cols=926 Identities=22% Similarity=0.214 Sum_probs=475.6
Q ss_pred HHhHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhchhhH-------hhhHHHHHHHHHHHHHHH-------HHHHHH
Q 000499 249 LEAEKEAGLLQ---YRQSLERLSNLESEVSHAREDSKGLSEQ-------ASIAEAEVQTLKEALARL-------ETEREA 311 (1460)
Q Consensus 249 LqtEKE~~~~q---Y~~slek~~~LE~~is~aQ~~~~~L~er-------a~~ae~E~~sLk~~la~L-------q~Ekea 311 (1460)
|++|++...-. +..-.++-..+|..+.++...+....++ +.+++.+++.++..+..+ +.|+.+
T Consensus 882 l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~ 961 (1930)
T KOG0161|consen 882 LQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNA 961 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655432 3334455566777777777776666553 445566666666666543 334333
Q ss_pred HHH-------HHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 000499 312 NIR-------QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALED 384 (1460)
Q Consensus 312 ~Ll-------qykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ 384 (1460)
+-- ...+|-+.+++|-..-..-++-.+.+...+...+.+++.|...++++.+.-+.....+.+=-....++|.
T Consensus 962 ~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek 1041 (1930)
T KOG0161|consen 962 AENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEK 1041 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 3344666666666666666666666677788888888889999999988888777666654445555555
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 000499 385 KLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLK 464 (1460)
Q Consensus 385 ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~ 464 (1460)
....++.+..-+.+.+..+......|...+.+...+...+..++++...-+..+...+...+..+.-|..+++.......
T Consensus 1042 ~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~ 1121 (1930)
T KOG0161|consen 1042 AKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRA 1121 (1930)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544445555566667777777777777777777777777777777777777777778888888888888888
Q ss_pred hHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 000499 465 GAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLA 544 (1460)
Q Consensus 465 ~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~ 544 (1460)
.+|.....|..+...|..+++...+...++..--.-+-.|+.+++..++++...+ +..+..+.+.|+.+-.++..-.
T Consensus 1122 K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~---e~~~~~lr~~~~~~~~el~~ql 1198 (1930)
T KOG0161|consen 1122 KAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDH---EAQIEELRKKHADSLAELQEQL 1198 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877787777777777777766554444333455568888888888754433 4455555556655544444443
Q ss_pred HHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000499 545 AELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEI 624 (1460)
Q Consensus 545 ~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el 624 (1460)
..++..+ ..++.-+.+|+.++..+..++..+..-....+...+.+...+..|...+..+..-+.--...+..++.++
T Consensus 1199 e~l~~~k---~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~ 1275 (1930)
T KOG0161|consen 1199 EQLQKDK---AKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNEN 1275 (1930)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3333333 3446677777777777777766665555555555666666666666655554432221112223333333
Q ss_pred HhhHHH-------HHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000499 625 YCLKEE-------LNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKN 697 (1460)
Q Consensus 625 ~~lkee-------~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkn 697 (1460)
..+... ...+.+....+..+++.+ +..+.+---....|-..+.....|++.|.+++.. =.+-.
T Consensus 1276 ~~l~~~lee~e~~~~~~~r~~~~~~~qle~~-------k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~lee---e~e~~ 1345 (1930)
T KOG0161|consen 1276 EELSRQLEEAEAKLSALSRDKQALESQLEEL-------KRQLEEETREKSALENALRQLEHELDLLREQLEE---EQEAK 1345 (1930)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 222222 222222222333333222 2222222222344444444444554444444433 12335
Q ss_pred HHHhhhhhhhhHhhhhHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Q 000499 698 AVLENSLSDLNVELEGVRDKVKALEEVC-QNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEG 776 (1460)
Q Consensus 698 s~LE~SLSdan~ELegLReK~K~LEesc-~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~ 776 (1460)
+-|+.-+|.+|+++..-|.|....-..| .-+.+.|- .+-..++...+.++-+.-++..||+....+..|++.
T Consensus 1346 ~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk-------~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d 1418 (1930)
T KOG0161|consen 1346 NELERKLSKANAELAQWKKKFEEEVLQRLEELEELKK-------KLQQRLQELEEQIEAANAKNASLEKAKNRLQQELED 1418 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5677778888888888887765544432 22333333 333444444444444444444444444444444433
Q ss_pred HHH--------------HHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHH
Q 000499 777 LRA--------------KSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQ 842 (1460)
Q Consensus 777 lr~--------------K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~ 842 (1460)
++. |.+.++.-+..++.....+..++..-.-........+..+...|.++.+-.-.+..
T Consensus 1419 ~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~r------- 1491 (1930)
T KOG0161|consen 1419 LQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRR------- 1491 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 333 33444444444444444555555554444555555555555555554443333333
Q ss_pred HHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhh-------hHHHHHHHHhhHHHHHHHHHHH----
Q 000499 843 KVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKA-------YEEELDKALDAQIEIFITQKYI---- 911 (1460)
Q Consensus 843 ~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~-------~eeE~dk~~~AqieifiLq~~l---- 911 (1460)
.+..+..++.+......--.+.+.+||+....+..+..-+... ++-+.++...+|++.--+..-+
T Consensus 1492 ----enk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l 1567 (1930)
T KOG0161|consen 1492 ----ENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRL 1567 (1930)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333333333333333333332222222 3344555555555533222111
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhhhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000499 912 QDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQE-------------EMRSLVDQIKVLRVQLYQLLEILEIDA 978 (1460)
Q Consensus 912 ~Dl~~kn~~ll~EcQk~~eas~~se~lIseLe~E~~~~q~-------------e~~~L~~~~~~Lr~gi~qv~k~L~i~~ 978 (1460)
++-.+-.-..=-.| ....+.+++.|++|.+...+ ++++-+++-.+-....+..++.++...
T Consensus 1568 ~ek~Ee~E~~rk~~------~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~ 1641 (1930)
T KOG0161|consen 1568 QEKDEEIEELRKNL------QRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQL 1641 (1930)
T ss_pred HhhhHHHHHHHHHH------HHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHH
Confidence 11111111111112 22334455566666555222 222222222222222222222222110
Q ss_pred cCCCcchhhhhhhhHHHHHHHHhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 000499 979 DHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQ 1058 (1460)
Q Consensus 979 ~~g~~d~~~~e~~l~~~l~~i~~~i~~l~~s~~~~q~enq~~~vEnsvL~t~L~ql~~e~~~L~~Ek~~L~~E~~~~s~q 1058 (1460)
..+|.-+....---+++..-+..++....-+-.|+--|-+-+.++-...+.++.|...+...+.....+
T Consensus 1642 -----------k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~ 1710 (1930)
T KOG0161|consen 1642 -----------KELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQ 1710 (1930)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 112233444444444555555555566666666666666666666666666666666555555555444
Q ss_pred HHHhhhhhh----hHHHHhHHHHHHHHh---hhhhHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhhhhhhhHHHHhhh
Q 000499 1059 FVVLQREFP----KLTEINEELRVEVAE---RNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLD 1131 (1460)
Q Consensus 1059 ~l~Lq~e~~----eLle~n~qL~~~~~~---~~~ree~lk~E~~~l~~~l~~l~~s~~~lq~e~~~~~~e~~sL~k~~~~ 1131 (1460)
...+-..+- ++.-+..+|...+.. +++|-...-+.+..+..+| ..=|+-+.++-..+.+|.+.+.|
T Consensus 1711 ~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el-------~~Eq~~~~~le~~k~~LE~~~kd 1783 (1930)
T KOG0161|consen 1711 NSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEEL-------RKEQETSQKLERLKKSLERQVKD 1783 (1930)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332221 223333333333332 2333333333333333333 33445555556666677777776
Q ss_pred hHHhhhhhhhhhhhHHHHHhhhccchhhhhhhHHHHHHHHHHHHHhHhhhhcchhhHHHHHHHhhhhhhHHHHhhHHHHH
Q 000499 1132 LQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQ 1211 (1460)
Q Consensus 1132 l~e~~~~lEden~~~l~E~i~~~~ls~~~~~~~~Ek~~~l~~L~e~l~~L~~~~~eL~~~v~~l~~kle~~e~en~~Lk~ 1211 (1460)
|.-....+|.- ++ -.++-.+.-=-..+.+|...|+.=..-+.+=...++-+.++...++.....-+.
T Consensus 1784 Lq~rL~e~E~~--a~-----------~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~eed~k 1850 (1930)
T KOG0161|consen 1784 LQLRLDEAEQA--AL-----------KGGKKQIAKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKELQFQVEEDKK 1850 (1930)
T ss_pred HHHHHHHHHHh--hh-----------hccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhhhhhh
Confidence 66655544421 11 112211221122255566656555555555555566666666666666666666
Q ss_pred HHHhhHHHHHhhhhhhhhhhhHhhhhhhhhhhhh
Q 000499 1212 SLEKSENELVAIGCVRDQLNCEIANGKDLLSRKE 1245 (1460)
Q Consensus 1212 ~le~~~~eL~~~~s~~~~l~~ei~~~~~~l~qkd 1245 (1460)
.++.+.+.......-.-.+--|+.-+.....++-
T Consensus 1851 ~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~ 1884 (1930)
T KOG0161|consen 1851 NIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNL 1884 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6665555444443333333334333333333333
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-08 Score=133.51 Aligned_cols=282 Identities=17% Similarity=0.227 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccc---hhhhHHHHHH
Q 000499 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPEN---FGLSVKELQD 664 (1460)
Q Consensus 588 sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~---~~~~VkeLQ~ 664 (1460)
.+..++.++..+.......... .....+..+|.....++..|..+...|..++..++-.... +...-+++..
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (1311)
T TIGR00606 472 RILELDQELRKAERELSKAEKN-----SLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMD 546 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666555444332 2345566666666666667776666666666555433222 1223334444
Q ss_pred HhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 000499 665 ENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFS 744 (1460)
Q Consensus 665 ~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvS 744 (1460)
....|....+.+...=..++. .. ..+..|...+.....++..++.++..++..+..+....+.+..+...+-.
T Consensus 547 k~~~~~~~~~~~~~~~~~~~~------~~-~~~~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~ 619 (1311)
T TIGR00606 547 KDEQIRKIKSRHSDELTSLLG------YF-PNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEE 619 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhcC------CC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444321111110 00 11244566666666666777777777777777777777777777777777
Q ss_pred hhhHHHHHHHh------hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh--hhhhhhhHHhHHHHHHhHHHHHHHH
Q 000499 745 QLQDVNENLKK------LSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLL--DNEKSCLITERVNLVSQLDIARKGL 816 (1460)
Q Consensus 745 QLq~~~~~l~~------L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l--~~e~s~l~~Ek~~L~sQl~~~~~~l 816 (1460)
+|+....++.+ ..+-...++.+|..+..++..+..-......+.... +.+++|....+.- ...+..
T Consensus 620 eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f------~~eee~ 693 (1311)
T TIGR00606 620 QLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVF------QTEAEL 693 (1311)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCC------CChhHH
Confidence 77776666652 222333444455555555555555555555566666 6666666633221 111112
Q ss_pred HHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhh
Q 000499 817 KDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRK 887 (1460)
Q Consensus 817 ~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~ 887 (1460)
..+.++.....++..+...+....+.+.++....|..-.-.+..+.......+..++..+.-+.....--.
T Consensus 694 ~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~ 764 (1311)
T TIGR00606 694 QEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLK 764 (1311)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Confidence 23333333344444444556667777777777777777777777777777777777777766555444333
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.7e-09 Score=134.97 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhhhhchhh
Q 000499 267 LSNLESEVSHAREDSKGLSE 286 (1460)
Q Consensus 267 ~~~LE~~is~aQ~~~~~L~e 286 (1460)
+..+...+..++.++..+++
T Consensus 167 ~~~~~~~~~~t~~nL~r~~d 186 (1179)
T TIGR02168 167 ISKYKERRKETERKLERTRE 186 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444433333
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-09 Score=138.14 Aligned_cols=15 Identities=7% Similarity=0.282 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 000499 960 IKVLRVQLYQLLEIL 974 (1460)
Q Consensus 960 ~~~Lr~gi~qv~k~L 974 (1460)
|..+......++..|
T Consensus 1024 f~~~~~~f~~~~~~l 1038 (1164)
T TIGR02169 1024 FEAINENFNEIFAEL 1038 (1164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-08 Score=129.60 Aligned_cols=54 Identities=15% Similarity=0.082 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000499 921 LLFECQKLLQESSLSEKLIHKLENENCEQQEE-MRSLVDQIKVLRVQLYQLLEIL 974 (1460)
Q Consensus 921 ll~EcQk~~eas~~se~lIseLe~E~~~~q~e-~~~L~~~~~~Lr~gi~qv~k~L 974 (1460)
+-.+++.+..+-.-....|.++..+....-.+ .+.+..=+..|..-+..++..|
T Consensus 998 l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~ 1052 (1179)
T TIGR02168 998 LKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKL 1052 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777888777777765433 4455555666666666666654
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.2e-08 Score=128.15 Aligned_cols=353 Identities=13% Similarity=0.122 Sum_probs=185.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHh---HHHHhhHhhHHHHHHHHHH--
Q 000499 416 KLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCL---LLERSNQTLHSELESMVQK-- 490 (1460)
Q Consensus 416 ~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~---~LE~~~q~L~sE~e~L~ek-- 490 (1460)
............++.+..++...+..++...+.+.....++.....+|..++.... .|+..+..+...++.....
T Consensus 416 e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1311)
T TIGR00606 416 DLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSL 495 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35555666777777777777777777777777777777777777777765544322 2222333333333222221
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHH
Q 000499 491 MGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEK 570 (1460)
Q Consensus 491 l~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~ 570 (1460)
......++.+++.++..|...+..-..+...+. .++-..-++..+..++......|..+ +..
T Consensus 496 ~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~k~~~~~~~----------~~~ 557 (1311)
T TIGR00606 496 TETLKKEVKSLQNEKADLDRKLRKLDQEMEQLN--------HHTTTRTQMEMLTKDKMDKDEQIRKI----------KSR 557 (1311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Confidence 112344445555555555444444222222111 11222333344444444444444333 333
Q ss_pred HHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCC
Q 000499 571 VKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSL 650 (1460)
Q Consensus 571 l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~ 650 (1460)
+......+-. ++.. . ..+++.+.++......++.++.---.+...+...+..+..++..+........+.|... -
T Consensus 558 ~~~~~~~~~~-~~~~--~-~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~-~ 632 (1311)
T TIGR00606 558 HSDELTSLLG-YFPN--K-KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDV-C 632 (1311)
T ss_pred HHHHHHHhcC-CCCC--c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 3333322222 2221 1 34455555555544444444443334445677777777888888888888888777732 2
Q ss_pred CccchhhhHHHHHHHhhhhHHHHHHhHH-------------------------------HHHHHHHHHHHH-HHHHHHHH
Q 000499 651 NPENFGLSVKELQDENSKLKEVYERDRC-------------------------------EKVALLEKLEIM-EKLLEKNA 698 (1460)
Q Consensus 651 ~~e~~~~~VkeLQ~~n~~LkE~~s~~~~-------------------------------EK~~L~~kLq~m-ekLlEkns 698 (1460)
.++.+-..+.++++...........+.+ +...++.+|+.+ .++-++..
T Consensus 633 ~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~ 712 (1311)
T TIGR00606 633 GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLK 712 (1311)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHH
Confidence 5666777888888877666644333222 224566666653 33445566
Q ss_pred HHhhhhhhhhHhhhhHHHH------HHHH-HHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhh-
Q 000499 699 VLENSLSDLNVELEGVRDK------VKAL-EEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDA- 770 (1460)
Q Consensus 699 ~LE~SLSdan~ELegLReK------~K~L-Eesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~- 770 (1460)
-++..+.+....++.++.- +..+ ..-+..+..+...+..+...+.+++..+...+..+......++..+.++
T Consensus 713 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~ 792 (1311)
T TIGR00606 713 STESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVT 792 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6666666666666666643 2222 1333344555555555555555555555555555555554454443333
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHh
Q 000499 771 -----NAEVEGLRAKSKSLEDSCLLL 791 (1460)
Q Consensus 771 -----n~ElE~lr~K~k~lEes~~~l 791 (1460)
..++..++.+++.++..+...
T Consensus 793 ~i~r~~~ei~~l~~qie~l~~~l~~~ 818 (1311)
T TIGR00606 793 IMERFQMELKDVERKIAQQAAKLQGS 818 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 666666666666666555543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-08 Score=126.51 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=31.6
Q ss_pred HHHHhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 000499 997 DQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFR 1053 (1460)
Q Consensus 997 ~~i~~~i~~l~~s~~~~q~enq~~~vEnsvL~t~L~ql~~e~~~L~~Ek~~L~~E~~ 1053 (1460)
..+..++..+...+.....+|...+.+---+..-+..+.....+|...+..|..-+.
T Consensus 954 ~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~ 1010 (1164)
T TIGR02169 954 EDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIE 1010 (1164)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555666666666666555555555555555555555555544433
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-08 Score=129.90 Aligned_cols=176 Identities=19% Similarity=0.207 Sum_probs=87.3
Q ss_pred HHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 000499 382 LEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFA 461 (1460)
Q Consensus 382 LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~ 461 (1460)
++.++..+......++..+..++.++..|...+.........+.....++..++..++..+...+.++..+..+......
T Consensus 270 ~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~ 349 (880)
T PRK02224 270 TEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRE 349 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444555555555555544555555566666666666666666666666666665555555
Q ss_pred hhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 000499 462 KLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELR 541 (1460)
Q Consensus 462 kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~ 541 (1460)
.+..++.....++.....+..+...+..++.....++.....++..+...+.+ ++..+..+. ..+.
T Consensus 350 ~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~-------~~~~~~~~e-------~~l~ 415 (880)
T PRK02224 350 DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD-------APVDLGNAE-------DFLE 415 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------chhhhhhhH-------HHHH
Confidence 55555555555554455555555555555544444444444444444444432 222222222 2233
Q ss_pred HHHHHHHHHHHHHHHhhhchHhHHHHHHHH
Q 000499 542 SLAAELQNRAQILKDMGTRNQSLQEEVEKV 571 (1460)
Q Consensus 542 ~L~~Ei~~~~~~L~~le~~k~~L~eev~~l 571 (1460)
.+..++..+...+..++.....+...+..+
T Consensus 416 ~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 445 (880)
T PRK02224 416 ELREERDELREREAELEATLRTARERVEEA 445 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555554444444444444
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.6e-08 Score=125.25 Aligned_cols=58 Identities=31% Similarity=0.397 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q 000499 591 NLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESV 648 (1460)
Q Consensus 591 ~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l 648 (1460)
........|++....++.++.-.....+.+..+...+.+++..+..+...+...+..+
T Consensus 534 ~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 591 (880)
T PRK02224 534 EKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL 591 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443344444444444444445555555554444444444
|
|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-06 Score=110.96 Aligned_cols=52 Identities=29% Similarity=0.436 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000499 315 QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKE 366 (1460)
Q Consensus 315 qykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKE 366 (1460)
.|..-...+..+...++..+++...+..+...++.++..++..+..+..+..
T Consensus 233 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~ 284 (1163)
T COG1196 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELE 284 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555555555555555544333
|
|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-06 Score=110.58 Aligned_cols=314 Identities=20% Similarity=0.245 Sum_probs=173.4
Q ss_pred HhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhHHHHHhHhHHHHHHHHHH
Q 000499 277 AREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQ-------------YQQCLDKLSNMEKNISRAEADAVELSDR 343 (1460)
Q Consensus 277 aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~Llq-------------ykqClE~Is~LE~~~s~aqeeak~lneR 343 (1460)
++....-++..+..+..+++.|...| +.+.+......+ |--....+..|....-.++.++..+...
T Consensus 58 ~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~ 136 (775)
T PF10174_consen 58 LKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKT 136 (775)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444556666677776666 555544332222 2233455667777777888888888888
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHH-
Q 000499 344 ASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLH--SEEDSKRINKVADKAESEVERLKQALGKLTEE- 420 (1460)
Q Consensus 344 a~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~--aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~ee- 420 (1460)
+.+++..+.++++++....++.+-..-.. +.+-.. +.........++..++..+..|...+......
T Consensus 137 lE~~q~~~e~~q~~l~~~~eei~kL~e~L----------~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~ 206 (775)
T PF10174_consen 137 LEELQLRIETQQQTLDKADEEIEKLQEML----------QSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEH 206 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999998888877665432211 100000 01111111122223333333332222222222
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhH
Q 000499 421 -------------------KEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLH 481 (1460)
Q Consensus 421 -------------------keal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~ 481 (1460)
-++++.-++....+|.++|..+-..+.++.+|.+.+.....--..+...+..-.+.-..++
T Consensus 207 ~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK 286 (775)
T PF10174_consen 207 MEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMK 286 (775)
T ss_pred hhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHH
Confidence 2345666667788999999999999999999987654333322222222222222223344
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhch
Q 000499 482 SELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRN 561 (1460)
Q Consensus 482 sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k 561 (1460)
+.++.+...++-.+.++...+.++..+.....|-..++--.-.+|...+.-.+..|-++-+|..++......++--..+.
T Consensus 287 ~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~ 366 (775)
T PF10174_consen 287 SKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQI 366 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555556556666665555555544444444455555555556666777777777777776666666666
Q ss_pred HhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHH
Q 000499 562 QSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRE 601 (1460)
Q Consensus 562 ~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE 601 (1460)
..++.+....+-|+..|.+.+-....-|..||..|.+|-+
T Consensus 367 ~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee 406 (775)
T PF10174_consen 367 EKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEE 406 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555555555544444444444444444443
|
Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains []. |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.3e-06 Score=105.18 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000499 255 AGLLQYRQSLERLSNLESE 273 (1460)
Q Consensus 255 ~~~~qY~~slek~~~LE~~ 273 (1460)
|+.-.|....+++....+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~ 173 (880)
T PRK03918 155 LGLDDYENAYKNLGEVIKE 173 (880)
T ss_pred hCCHHHHHHHHHHHHHHHH
Confidence 5666676666665554333
|
|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-05 Score=106.07 Aligned_cols=307 Identities=24% Similarity=0.323 Sum_probs=168.6
Q ss_pred HHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHH
Q 000499 318 QCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRIN 397 (1460)
Q Consensus 318 qClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln 397 (1460)
.|-+.+..++.++.....++... .++..++.++..+. ......+|.+-...+..+...+..+++....+.
T Consensus 190 ~~~~~~~el~~~l~~L~~q~~~a--------~~y~~l~~e~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 259 (1163)
T COG1196 190 RLEDLLEELEKQLEKLERQAEKA--------ERYQELKAELRELE--LALLLAKLKELRKELEELEEELSRLEEELEELQ 259 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444332 23444444444442 222333455556677777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhh
Q 000499 398 KVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSN 477 (1460)
Q Consensus 398 ~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~ 477 (1460)
..+..+..++..++..+..+.......+..+......+..++..+....+.+..+...+......+..++.....++..+
T Consensus 260 ~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1163)
T COG1196 260 EELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL 339 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87888888888888888888888888777777777788888888888888888888777777777666666544443333
Q ss_pred HhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Q 000499 478 QTLHSELESMVQKMGSQSQELTEKQKELGRLWT-CIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKD 556 (1460)
Q Consensus 478 q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~-slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~ 556 (1460)
...... ...+......+.....+.+.... ..++....+......+..+..-.++.+.++..+..++..+...++.
T Consensus 340 ~~~~~~----~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~ 415 (1163)
T COG1196 340 EERETL----LEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER 415 (1163)
T ss_pred HHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332111 11111111222222222222222 2222233334444444444455555556666666666666555555
Q ss_pred hhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHH
Q 000499 557 MGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNK 636 (1460)
Q Consensus 557 le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~ 636 (1460)
+.....++..++..+..+...+... +..+..++..|.+.+..+.....-.-.+-..++..++..+.++..+..
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 488 (1163)
T COG1196 416 LSERLEDLKEELKELEAELEELQTE-------LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEA 488 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544443333 333444444444444333333332222334566666666777776666
Q ss_pred HHHHHHHHH
Q 000499 637 KHQAMVEQV 645 (1460)
Q Consensus 637 k~~~l~e~l 645 (1460)
++..+....
T Consensus 489 ~~~~l~~~~ 497 (1163)
T COG1196 489 RLDRLEAEQ 497 (1163)
T ss_pred HHHHHHHHh
Confidence 665555543
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-05 Score=102.09 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=16.8
Q ss_pred HhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000499 324 SNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARI 361 (1460)
Q Consensus 324 s~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l 361 (1460)
..++..+.........+..++...+.++..++..+..+
T Consensus 241 ~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l 278 (880)
T PRK03918 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL 278 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444555444444
|
|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-05 Score=97.63 Aligned_cols=479 Identities=19% Similarity=0.219 Sum_probs=214.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------HHHHHH-------HhhhhhchhhHhhhHHHHHHHH
Q 000499 232 MGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNL------ESEVSH-------AREDSKGLSEQASIAEAEVQTL 298 (1460)
Q Consensus 232 ~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~L------E~~is~-------aQ~~~~~L~era~~ae~E~~sL 298 (1460)
..++..+|+.|+..+ ..+.|......+.+..-..+..+ ..++.. ++.++-.|.+.+-+++..+.++
T Consensus 69 ~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~ 147 (775)
T PF10174_consen 69 NQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQ 147 (775)
T ss_pred HHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999 88888776666533333222222 222222 2233333333333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----
Q 000499 299 KEALARLETEREANIRQYQQCLDKLSNMEKNIS--RAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVK----- 371 (1460)
Q Consensus 299 k~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s--~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lq----- 371 (1460)
++++...+++ ...|.+.+ +.+-. .+.........|+..++..+..|..-+.....+...+.-+
T Consensus 148 q~~l~~~~ee-------i~kL~e~L---~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~ 217 (775)
T PF10174_consen 148 QQTLDKADEE-------IEKLQEML---QSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRL 217 (775)
T ss_pred HHHHHHHHHH-------HHHHHHHH---hhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Confidence 4444333333 23333333 11111 3334444455677777777777776666665555333212
Q ss_pred -----------HHHHH----HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000499 372 -----------YEECS----RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAIS 436 (1460)
Q Consensus 372 -----------yqQcL----E~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~ 436 (1460)
|+.++ .+|+.||.-|-.++.++.++......+...-..+.+. .+.-......+-.++-
T Consensus 218 ~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~-------le~~~s~~~~mK~k~d 290 (775)
T PF10174_consen 218 QMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQ-------LEVYKSHSLAMKSKMD 290 (775)
T ss_pred hcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHH-------HHHHHhhHHHHHHHHH
Confidence 22233 2455555555555555554443322221111111111 1111111112223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000499 437 ILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEER 516 (1460)
Q Consensus 437 ~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~ 516 (1460)
.+..+++..-.|+-.|..++.+......+.=.+...|..++.....+...|..-+-.+...|+.+..-+.+.+..+..=.
T Consensus 291 ~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~q 370 (775)
T PF10174_consen 291 RLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQ 370 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433333333322222222222222222222222222222223333333333333333311
Q ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCccccccc--HHHHHHHHH
Q 000499 517 LRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSS--AESIKNLQD 594 (1460)
Q Consensus 517 ~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS--~~sIk~LQd 594 (1460)
....-.-..+..|...|-...-+++.|.-.|+++...|.+=.. .+.....++.-.-...+.-+..+ ...+.+...
T Consensus 371 eE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~---ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker 447 (775)
T PF10174_consen 371 EEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDR---QLDEEKERLSSQADSSNEDEALETLEEALREKER 447 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Confidence 1111111222333334444445555555555555555443211 12222222211000111111100 013333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHhhcCCCccchhhhHHHHHHHhh
Q 000499 595 EILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKH-------QAMVEQVESVSLNPENFGLSVKELQDENS 667 (1460)
Q Consensus 595 Ei~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~-------~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~ 667 (1460)
-+..|.+.....+.+ ..++-+.++.++..++..+..|...+ ..+.+.++.+-.+-....+-++-|+..+.
T Consensus 448 ~~e~l~e~r~~~e~e---~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lE 524 (775)
T PF10174_consen 448 LQERLEEQRERAEKE---RQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELE 524 (775)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHH
Confidence 334433332221111 12333444444444444444444433 34556666666666666788889999999
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000499 668 KLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENS-------LSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAE 738 (1460)
Q Consensus 668 ~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~S-------LSdan~ELegLReK~K~LEesc~sL~~eKS~L~sE 738 (1460)
+.++.|.+....= .+++.-.++......||.. .+.+.+|+|-|+..++..|........++..|.++
T Consensus 525 k~rek~~kl~~ql----~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~Leke 598 (775)
T PF10174_consen 525 KKREKHEKLEKQL----EKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKE 598 (775)
T ss_pred HhhhHHHHHHHHH----HHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999888776432 1233323445556666664 45556778888888888887777777777777766
|
Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains []. |
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-11 Score=154.21 Aligned_cols=715 Identities=20% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHH
Q 000499 409 RLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMV 488 (1460)
Q Consensus 409 ~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ 488 (1460)
.|...+.+...+...+..+++.-...+..|...+...|..|.-|..+++....-=.-+|.....|..++-.|..+++...
T Consensus 8 ~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~ 87 (859)
T PF01576_consen 8 ELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAG 87 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555566666655555555555555556666556655555544444455554455555555555555444
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHH
Q 000499 489 QKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEV 568 (1460)
Q Consensus 489 ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev 568 (1460)
.....+..-....-.|+..|+..+.+.+ +.-+.++..|.+-|+.. +..|...|..+...-..++..+..|..++
T Consensus 88 ~~t~aq~E~~kkrE~El~~Lrr~LEe~~---~~~e~~~~~lrkkh~~~---~~eL~eqle~lqk~k~~lEK~k~~l~~e~ 161 (859)
T PF01576_consen 88 GATQAQIELNKKREAELAKLRRDLEEAN---LQHEATLAELRKKHQDA---VAELNEQLEQLQKQKAKLEKEKSQLEAEL 161 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4433333233455578888888887633 33355666666666544 44566677777766677899999999999
Q ss_pred HHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q 000499 569 EKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESV 648 (1460)
Q Consensus 569 ~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l 648 (1460)
..+..++..+......+...++.+...+.-++......+..+. .|......+..++..|...+......+..+
T Consensus 162 ~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~-------el~~~k~kL~~E~~eL~~qLee~e~~~~~l 234 (859)
T PF01576_consen 162 DDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRN-------ELTEQKAKLQSENSELTRQLEEAESQLSQL 234 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888888888888888888776555433332 222222233333333333332222222222
Q ss_pred CCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhhHhhhhHHHHHHHHHHH
Q 000499 649 SLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLE----KNAVLENSLSDLNVELEGVRDKVKALEEV 724 (1460)
Q Consensus 649 ~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlE----kns~LE~SLSdan~ELegLReK~K~LEes 724 (1460)
. -.|..|-.+|.++..-++ ....|...+..+..++++||+.+-.-.++
T Consensus 235 ~----------------------------r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~ 286 (859)
T PF01576_consen 235 Q----------------------------REKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEA 286 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H----------------------------HHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 1 123334444444333222 24455566666666666666666666666
Q ss_pred HHHHHHhhhhhhhhHHHHHhhhhHHHHH-HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHH
Q 000499 725 CQNLLAEKSTLVAEKNSLFSQLQDVNEN-LKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERV 803 (1460)
Q Consensus 725 c~sL~~eKS~L~sEK~~LvSQLq~~~~~-l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~ 803 (1460)
-..|....+.+..|=..+-+.++..... +..|.+-.-.|...|.+++..++..+.++..|+-.+.-+..+...+..++.
T Consensus 287 k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe 366 (859)
T PF01576_consen 287 KSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELE 366 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555555555544444444443332 455555566667777777777777777777777776666666666666666
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHh
Q 000499 804 NLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEG 883 (1460)
Q Consensus 804 ~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~ 883 (1460)
...+....+...-+.+.+..+++..++..++.+.+.+-.+...+..-+..=...+.+ ....+..++.....|+
T Consensus 367 ~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee----~~e~~e~lere~k~L~--- 439 (859)
T PF01576_consen 367 KAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEE----LQEQLEELERENKQLQ--- 439 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHH---
Confidence 666666666666666666667777777766666655544444333222211111111 0111112222222111
Q ss_pred hhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000499 884 LCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVL 963 (1460)
Q Consensus 884 ~~r~~~~eeE~dk~~~AqieifiLq~~l~Dl~~kn~~ll~EcQk~~eas~~se~lIseLe~E~~~~q~e~~~L~~~~~~L 963 (1460)
.+++.+.+. +----+.+.+|+...=.|-.+..-+-.+-.=++.-+...+....-.++++..+-.++
T Consensus 440 --------~El~dl~~q---~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~--- 505 (859)
T PF01576_consen 440 --------DELEDLTSQ---LDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEI--- 505 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------Hhhccchhh---hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 122111110 001112222222222222222211111111111111111111111111111111111
Q ss_pred HHHHHHHHHHHhhcccCCCcchhhhhhhhHHHHHHHHhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000499 964 RVQLYQLLEILEIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLAT 1043 (1460)
Q Consensus 964 r~gi~qv~k~L~i~~~~g~~d~~~~e~~l~~~l~~i~~~i~~l~~s~~~~q~enq~~~vEnsvL~t~L~ql~~e~~~L~~ 1043 (1460)
+-. .- -+++++= -.=....-.|..|+.++..=.....-.+-.+.=|=.=+..+..-+.....
T Consensus 506 -----------er~--l~----eKeeE~E-~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~ 567 (859)
T PF01576_consen 506 -----------ERE--LQ----EKEEEFE-ETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANR 567 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------HHH--HH----hhhhHHH-HHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 000 00 0011100 01111122233333333211111111111111111111111111111122
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHhHHHHHHhHhhhhhhhhhhh
Q 000499 1044 ERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKK 1123 (1460)
Q Consensus 1044 Ek~~L~~E~~~~s~q~l~Lq~e~~eLle~n~qL~~~~~~~~~ree~lk~E~~~l~~~l~~l~~s~~~lq~e~~~~~~e~~ 1123 (1460)
.+..+.+.+.....++--+|....+-.-...+++..+.....+-..|.+|++.++..+.....+.+.+..|...+.+...
T Consensus 568 ~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~ 647 (859)
T PF01576_consen 568 ANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLN 647 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333444444555555566555555556666676777777778888899999999999999999999999988888888
Q ss_pred hHHHHhhhhHHhhhhhhhhhhhHHHHHhhhccchhhhhhhHHHHHHHHHHHHHhHhh-------hhcchhhHHHHHHHhh
Q 000499 1124 SLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDK-------LGCINNELEEKVRLKD 1196 (1460)
Q Consensus 1124 sL~k~~~~l~e~~~~lEden~~~l~E~i~~~~ls~~~~~~~~Ek~~~l~~L~e~l~~-------L~~~~~eL~~~v~~l~ 1196 (1460)
.|......+...+..+|.+...+=.+.=-.-+-.-.....+.--...+..+..+|.. +-..+..|...|+.|.
T Consensus 648 ~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq 727 (859)
T PF01576_consen 648 ELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQ 727 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887754332211111222222222222334444444443 4445555555555555
Q ss_pred hhhhHHH
Q 000499 1197 GKLEDVQ 1203 (1460)
Q Consensus 1197 ~kle~~e 1203 (1460)
.++...+
T Consensus 728 ~rl~e~E 734 (859)
T PF01576_consen 728 ARLEEAE 734 (859)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 5554433
|
Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q. |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=0.0012 Score=85.68 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 428 YQQCLEAISILEHKLARAEEEAQRL 452 (1460)
Q Consensus 428 ~qq~~~kI~~LE~els~sQEEv~RL 452 (1460)
+.+....+..++..+.....++..+
T Consensus 300 ~~~~~~~l~~l~~~l~~l~~~l~~~ 324 (895)
T PRK01156 300 YFKYKNDIENKKQILSNIDAEINKY 324 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555444444443333
|
|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.0022 Score=83.40 Aligned_cols=186 Identities=24% Similarity=0.298 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----HhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHH
Q 000499 259 QYRQSLERLSNLESEVSH-----AREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQ----QCLDKLSNMEKN 329 (1460)
Q Consensus 259 qY~~slek~~~LE~~is~-----aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~Llqyk----qClE~Is~LE~~ 329 (1460)
+|++-++++-.-++++.. +|...+..++++...+...+.|...+.+++.+.+-+- ++. ...+++..+..+
T Consensus 469 eL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q-~~~~~~~~~~~kv~~~rk~ 547 (1317)
T KOG0612|consen 469 ELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQ-KKNDNAADSLEKVNSLRKQ 547 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHH
Confidence 555555555554544443 6677777777787777788888777777777766552 222 224555555555
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHH
Q 000499 330 ISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVER 409 (1460)
Q Consensus 330 ~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~ 409 (1460)
+-.+..+++...+-+.+...-.+.+...+ ++=++.-..++.++..+++.-.++...-..+...+..
T Consensus 548 le~~~~d~~~e~~~~~kl~~~~~e~~~~i--------------q~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~ 613 (1317)
T KOG0612|consen 548 LEEAELDMRAESEDAGKLRKHSKELSKQI--------------QQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEK 613 (1317)
T ss_pred HHHhhhhhhhhHHHHhhHhhhhhhhhHHH--------------HHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444444433332222222222222221 1222233456666666666666666655556666666
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000499 410 LKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGF 460 (1460)
Q Consensus 410 Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~ 460 (1460)
....-..+.+...++...+..+.+++..+...+...++ .+|.+.|...-.
T Consensus 614 ~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~~~~ 663 (1317)
T KOG0612|consen 614 ERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERISDS 663 (1317)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHH
Confidence 66666666666666777777776777666666666666 666665544333
|
|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
Probab=98.81 E-value=7e-10 Score=141.85 Aligned_cols=424 Identities=23% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhH
Q 000499 417 LTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQ 496 (1460)
Q Consensus 417 L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~q 496 (1460)
+......+...+.....++..|+....+.+.++.-+..+++........+|..--.+...+..++...+.+........+
T Consensus 326 L~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~ 405 (859)
T PF01576_consen 326 LERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQR 405 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666666666666666666666666665566555445555555555555555554445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhc
Q 000499 497 ELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENK 576 (1460)
Q Consensus 497 eL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~ 576 (1460)
+......+|..|+..+.+-.... ..+..-....+.++.-|..-+......+.+|+..+..|+.++..+...+.
T Consensus 406 e~r~~~te~~~Lk~~lee~~e~~-------e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~le 478 (859)
T PF01576_consen 406 EARELETELFKLKNELEELQEQL-------EELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLE 478 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554421111 12222222222333333333333333344444444444444444433333
Q ss_pred cCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHhhHHHHH--------------HHHHHHHHH
Q 000499 577 GLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRV-DQRNALQQEIYCLKEELN--------------ELNKKHQAM 641 (1460)
Q Consensus 577 ~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~-~ek~aLq~el~~lkee~~--------------~Ln~k~~~l 641 (1460)
-+....-..+..+..++.++..+|-...+-=.+..-.+ +-+..+|..|..+...++ +|...+..|
T Consensus 479 E~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eL 558 (859)
T PF01576_consen 479 EAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNEL 558 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222233444555555555432221000000000 001122222222222211 111122222
Q ss_pred HHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHH
Q 000499 642 VEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKAL 721 (1460)
Q Consensus 642 ~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~L 721 (1460)
..++...+-...-....++.++...-.|......... ..+.+.+....++.-+..+..|++.+|......
T Consensus 559 e~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~----------~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a 628 (859)
T PF01576_consen 559 EIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQR----------AREELREQLAVSERRLRALQAELEELREALEQA 628 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223233322222333333333333322211111111 123455566777788888888888888887777
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH-------Hhhhh
Q 000499 722 EEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCL-------LLDNE 794 (1460)
Q Consensus 722 Eesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~-------~l~~e 794 (1460)
+-.+..+-.+...+..+=+.|-++-..+...-..|.-+.+.|+..|-+...+.+.+-.|.+-...... .....
T Consensus 629 ~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~ 708 (859)
T PF01576_consen 629 ERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDH 708 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 77777665555554443333333333322222233333333333333333333333333332222211 12222
Q ss_pred hhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhh
Q 000499 795 KSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQ 863 (1460)
Q Consensus 795 ~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k 863 (1460)
...+-..|.+|..||.-++.++..++...-. +...-+.++-..|.+|...|..|..+|..+.+
T Consensus 709 ~~~le~~k~~LE~q~keLq~rl~e~E~~~~~------~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k 771 (859)
T PF01576_consen 709 NQHLEKEKKALERQVKELQARLEEAEQSALK------GGKKQIAKLEARIRELEEELESEQRRRAEAQK 771 (859)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------ccccHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223355666666666666655554432211 11222333444555666666666666665543
|
Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q. |
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.005 Score=82.87 Aligned_cols=217 Identities=17% Similarity=0.268 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhh----chHhH--------
Q 000499 497 ELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGT----RNQSL-------- 564 (1460)
Q Consensus 497 eL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~----~k~~L-------- 564 (1460)
++.....+++..+.....-......+......+....-+.+.+++.+..++..+.+.+..+.. .+.+|
T Consensus 470 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~ 549 (1201)
T PF12128_consen 470 QLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNK 549 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCC
Confidence 334444445554444444444555555555555555555566666666666665554444332 22233
Q ss_pred ---HHHHHHHHH----HhccCcccccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHH
Q 000499 565 ---QEEVEKVKE----ENKGLNELNLSSA--ESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELN 635 (1460)
Q Consensus 565 ---~eev~~l~E----En~~L~e~n~SS~--~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln 635 (1460)
++.|-++-. ...+|+|+-.... .++=+++=-++.+. +.-.....++|.+++..+...+..+.
T Consensus 550 p~We~tIGKVid~eLL~r~dL~P~l~~~~~~dslyGl~LdL~~I~---------~pd~~~~ee~L~~~l~~~~~~l~~~~ 620 (1201)
T PF12128_consen 550 PGWEQTIGKVIDEELLYRTDLEPQLVEDSGSDSLYGLSLDLSAID---------VPDYAASEEELRERLEQAEDQLQSAE 620 (1201)
T ss_pred CcHHHHhHhhCCHHHhcCCCCCCeecCCCcccccceeEeehhhcC---------CchhhcChHHHHHHHHHHHHHHHHHH
Confidence 444444322 2347888754332 34545543333332 11122344566666666666666666
Q ss_pred HHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHH
Q 000499 636 KKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVR 715 (1460)
Q Consensus 636 ~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLR 715 (1460)
.+...+..++...+-..+.....+...+-.....+........+...+-.+... .+-+.-...+..+..+..++..+.
T Consensus 621 ~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 621 ERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEE--AKEERKEQIEEQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655444333333333333333344444444444444333332222 233445566666666666666666
Q ss_pred HHHHHHHHH
Q 000499 716 DKVKALEEV 724 (1460)
Q Consensus 716 eK~K~LEes 724 (1460)
...+.+.+-
T Consensus 699 ~e~~~~~~~ 707 (1201)
T PF12128_consen 699 QELEELLEE 707 (1201)
T ss_pred HHHHHHHHH
Confidence 655554443
|
|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.0012 Score=81.57 Aligned_cols=148 Identities=23% Similarity=0.271 Sum_probs=108.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000499 536 SQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVD 615 (1460)
Q Consensus 536 SQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ 615 (1460)
...|+.....+|+.....+..+...-.+|..++...+.++..+.+.--.+...|..|+.++..++-.......+...-.+
T Consensus 286 ~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~ 365 (522)
T PF05701_consen 286 AKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKE 365 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhh
Confidence 44666667777777788888888888889999999999998888777777778999999999888777666555554445
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHH-HhHHHHHHH
Q 000499 616 QRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYE-RDRCEKVAL 683 (1460)
Q Consensus 616 ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s-~~~~EK~~L 683 (1460)
.-..+...+..+..+.+........+..++..+.-..+..+..++..+..+.....+.. .-.+|..++
T Consensus 366 ~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Al 434 (522)
T PF05701_consen 366 AMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALAL 434 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777788888888777777777777777777777788877777665444433 334444443
|
Several sequences in this family are described as being myosin heavy chain-like. |
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.0007 Score=86.19 Aligned_cols=319 Identities=24% Similarity=0.257 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000499 546 ELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIY 625 (1460)
Q Consensus 546 Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~ 625 (1460)
++.-.+..+.++...|..|.++-..+++++.+|.-++-.. .+-.+|..++.....|+. ++...+..+.
T Consensus 258 Ds~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~-----tleseiiqlkqkl~dm~~-------erdtdr~kte 325 (1195)
T KOG4643|consen 258 DSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGA-----TLESEIIQLKQKLDDMRS-------ERDTDRHKTE 325 (1195)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccC-----ChHHHHHHHHHHHHHHHH-------hhhhHHHHHH
Confidence 3444566778888888889999888999888887776322 345567777776666544 5567777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCC-------CccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH--HHHHHHH
Q 000499 626 CLKEELNELNKKHQAMVEQVESVSL-------NPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI--MEKLLEK 696 (1460)
Q Consensus 626 ~lkee~~~Ln~k~~~l~e~l~~l~~-------~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~--mekLlEk 696 (1460)
.+-++...|.-...+|--++..+++ .-.|.+.-+..|-.. --++-. ...-++...+..+|. .+.+.-|
T Consensus 326 eL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~-ralkll--LEnrrlt~tleelqsss~Ee~~SK 402 (1195)
T KOG4643|consen 326 ELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSD-RALKLL--LENRRLTGTLEELQSSSYEELISK 402 (1195)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhH-HHHHHH--HHhHHHHHHHHHHhhhhHHHHHHH
Confidence 7777777777766666666666655 122222222222220 001111 122345666666665 5667777
Q ss_pred HHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhh---hhHHH
Q 000499 697 NAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLF---DANAE 773 (1460)
Q Consensus 697 ns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slS---d~n~E 773 (1460)
...|++-=.++-.+.+-|-+++..+--...-|.+.--.|.-|++.|.-....++..++.=..++..+-..+| -+.++
T Consensus 403 ~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~e 482 (1195)
T KOG4643|consen 403 HLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAE 482 (1195)
T ss_pred HHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 777777656666666666666655555555555555667778888888888888877766666666655544 45678
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHH
Q 000499 774 VEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDA 853 (1460)
Q Consensus 774 lE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~ 853 (1460)
.+.++.+.|.+-.+++-=..+-+++.+.+..+..|+......+.-+..+..+|+....++..|...++.+|-.|--.
T Consensus 483 t~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t--- 559 (1195)
T KOG4643|consen 483 TEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT--- 559 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---
Confidence 99999999999999999999999999999999999999999999999999999999999999888777776544221
Q ss_pred HHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHH
Q 000499 854 EKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQI 902 (1460)
Q Consensus 854 e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~Aqi 902 (1460)
| |...+-|.++.++..|..++++-++|=.
T Consensus 560 -~-------------------qn~~~LEq~~n~lE~~~~elkk~idaL~ 588 (1195)
T KOG4643|consen 560 -S-------------------QNGALLEQNNNDLELIHNELKKYIDALN 588 (1195)
T ss_pred -h-------------------HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 2 3445566777778888888888776633
|
|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.0057 Score=79.54 Aligned_cols=113 Identities=20% Similarity=0.232 Sum_probs=61.1
Q ss_pred hhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHH
Q 000499 731 EKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLD 810 (1460)
Q Consensus 731 eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~ 810 (1460)
..--+.++...+-..+++-..++.+...+.+.|+..+-++..+++.|-..++++++..-- +..+...-..-+.
T Consensus 915 ~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E-------~~~~~~e~~~~~~ 987 (1293)
T KOG0996|consen 915 QLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAE-------LEKEYKEAEESLK 987 (1293)
T ss_pred HHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-------HHHHHHHHHHHHH
Confidence 333455555566666666666677777777777776666666666666666666544333 3333333333444
Q ss_pred HHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHh
Q 000499 811 IARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFS 850 (1460)
Q Consensus 811 ~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~s 850 (1460)
-+...+..+...|.+....+..+..++=.+..+++..+..
T Consensus 988 E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~ 1027 (1293)
T KOG0996|consen 988 EIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGE 1027 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4444555555555555555555555431144444444433
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.0065 Score=79.21 Aligned_cols=8 Identities=0% Similarity=-0.213 Sum_probs=4.0
Q ss_pred hhhhhhhh
Q 000499 208 EENEQLQH 215 (1460)
Q Consensus 208 ~~e~s~l~ 215 (1460)
||++..+.
T Consensus 137 Qg~~~~l~ 144 (895)
T PRK01156 137 QGEMDSLI 144 (895)
T ss_pred ccchHHHH
Confidence 55555444
|
|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.0041 Score=79.64 Aligned_cols=99 Identities=22% Similarity=0.330 Sum_probs=68.0
Q ss_pred hHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 000499 658 SVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVA 737 (1460)
Q Consensus 658 ~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~s 737 (1460)
..+.+-..|..|.+.+.....|.+.|+.+++.+.--..+-+.||.+.++.-..=..++.-+++|.+
T Consensus 524 qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~a-------------- 589 (1195)
T KOG4643|consen 524 QYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNA-------------- 589 (1195)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--------------
Confidence 445566778889999999999999999999987666888889998888876555555555555441
Q ss_pred hHHHHHhhhhHHHHHHHhhhhh--hhhhhhhhhhhHHHHHHHHHHH
Q 000499 738 EKNSLFSQLQDVNENLKKLSDE--NNFLVNSLFDANAEVEGLRAKS 781 (1460)
Q Consensus 738 EK~~LvSQLq~~~~~l~~L~Ek--ns~LE~slSd~n~ElE~lr~K~ 781 (1460)
++--.++|+++ |..+-.--++.+.-.+.+|+++
T Consensus 590 -----------lrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~~ 624 (1195)
T KOG4643|consen 590 -----------LRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRKE 624 (1195)
T ss_pred -----------HHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHHH
Confidence 22223344444 5555555556677777777773
|
|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.0081 Score=78.20 Aligned_cols=164 Identities=20% Similarity=0.275 Sum_probs=104.2
Q ss_pred hhhhhHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----chhhHhhhHHHHHHHHHHH-
Q 000499 231 RMGKAEMEILTLK----NALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSK----GLSEQASIAEAEVQTLKEA- 301 (1460)
Q Consensus 231 R~~kAe~EI~~Lk----k~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~----~L~era~~ae~E~~sLk~~- 301 (1460)
|..-|+.|-..|- .+|.=|+.|.+....+-..+--+|+..=+.|..+|.... +|.+.+.+..++...-.+.
T Consensus 289 ~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~ 368 (1293)
T KOG0996|consen 289 RVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKN 368 (1293)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHH
Confidence 4455667766664 467788888888865544444444443444444444332 2333333333322222111
Q ss_pred --HHHHHHHHHHHHH-HHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000499 302 --LARLETEREANIR-QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRM 378 (1460)
Q Consensus 302 --la~Lq~Ekea~Ll-qykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~ 378 (1460)
.-+--.++.+-+- .+.+|..+...++.+-..-++..+.++..+.+++.+++..+.+...++.--+.+....++|-..
T Consensus 369 e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~e 448 (1293)
T KOG0996|consen 369 EAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTE 448 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHH
Confidence 1111122333333 5778888999999999999999999999999999999999988888887777777777888888
Q ss_pred HHHHHhhhhhhhHhHH
Q 000499 379 ISALEDKLLHSEEDSK 394 (1460)
Q Consensus 379 IS~LE~ki~~aee~~~ 394 (1460)
|+.|+.....++..+.
T Consensus 449 i~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 449 IEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888777655554444
|
|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0056 Score=76.11 Aligned_cols=520 Identities=21% Similarity=0.264 Sum_probs=256.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHH-------HH
Q 000499 234 KAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALAR-------LE 306 (1460)
Q Consensus 234 kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~-------Lq 306 (1460)
.+..=|.+.+++|..||=+-|.+-+-++..+.---+|=+..+- -...|.+ |+.+-++ -+
T Consensus 110 enrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~nna-TR~lCNl-------------LKeT~~rsaEK~~~yE 175 (786)
T PF05483_consen 110 ENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKENNA-TRHLCNL-------------LKETCQRSAEKMKKYE 175 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhhhH-HHHHHHH-------------HHHHHHHHHHHHHHHH
Confidence 5566689999999999988888777776666655555444331 1222322 2333322 24
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHh
Q 000499 307 TEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVK--YEECSRMISALED 384 (1460)
Q Consensus 307 ~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lq--yqQcLE~IS~LE~ 384 (1460)
.|++-..-.|. .+++-+.+....|+.|+ ..+|.+-.-++ .+.|++.|..|+.
T Consensus 176 ~EREET~qly~---------------------~l~~niekMi~aFEeLR-----~qAEn~r~EM~fKlKE~~~k~~~lee 229 (786)
T PF05483_consen 176 YEREETRQLYM---------------------DLNENIEKMIAAFEELR-----VQAENDRQEMHFKLKEDYEKFEDLEE 229 (786)
T ss_pred HHHHHHHHHHH---------------------HHhhhHHHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433332 33344444555555543 33444444443 4578888888877
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 000499 385 KLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLK 464 (1460)
Q Consensus 385 ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~ 464 (1460)
+. ..++.--+.+|.-|...+......+..+...++....++..|+..-...++-++..+.+-+++.+.|.
T Consensus 230 ey----------~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~ 299 (786)
T PF05483_consen 230 EY----------KKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELE 299 (786)
T ss_pred HH----------HHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Confidence 62 22233447778888888888888888888888888888888887766666666666555555555555
Q ss_pred hHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------ccH
Q 000499 465 GAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHS-------QSQ 537 (1460)
Q Consensus 465 ~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhS-------qSQ 537 (1460)
++=..++..+..--.|..+++.....+-...++ +-..++.+......-...+.+-.++...|+.+.. ...
T Consensus 300 ~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~e---Ke~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~e 376 (786)
T PF05483_consen 300 DIKQSLQESESTQKALEEDLQQATKTLIQLTEE---KEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNE 376 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 433333322222222233333333322211121 1222222222222222222333333333322211 123
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000499 538 DELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQR 617 (1460)
Q Consensus 538 eE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek 617 (1460)
++++.|+.++++....|.+|-..++.=.-++..++.. |.+. + .|-|+-..+.-+.+.
T Consensus 377 d~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~---L~e~---q-----kll~ekk~~eki~E~------------ 433 (786)
T PF05483_consen 377 DQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKI---LAEK---Q-----KLLDEKKQFEKIAEE------------ 433 (786)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHH---HHHH---H-----HHHHHHHHHHHHHHH------------
Confidence 5556677777777777777654443332223222211 1000 0 111111111111111
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000499 618 NALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKN 697 (1460)
Q Consensus 618 ~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkn 697 (1460)
|+..-.++..-+....+..+.|..+|...-.+-.....
T Consensus 434 --lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~ysk---------------------------------------- 471 (786)
T PF05483_consen 434 --LQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSK---------------------------------------- 471 (786)
T ss_pred --HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHH----------------------------------------
Confidence 11111111111222222222222222111110000011
Q ss_pred HHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHH--------------HHHHHhhhhhhhhh
Q 000499 698 AVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDV--------------NENLKKLSDENNFL 763 (1460)
Q Consensus 698 s~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~--------------~~~l~~L~Ekns~L 763 (1460)
-+-++.++|+.-+.|-..|=..|.-|.-++-.++-|.....+.+-.. ....++|.+.++.|
T Consensus 472 -----QVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~L 546 (786)
T PF05483_consen 472 -----QVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQL 546 (786)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233344444333334444444444444444444444444433333 23345667777777
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHH
Q 000499 764 VNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQK 843 (1460)
Q Consensus 764 E~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~ 843 (1460)
=+-+..+..++...+..|++. +..-..+...+..+......|+..+...+.++++..+.- .+++..
T Consensus 547 rneles~~eel~~k~~Ev~~k---l~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk-----------~K~iee 612 (786)
T PF05483_consen 547 RNELESVKEELKQKGEEVKCK---LDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENK-----------NKNIEE 612 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-----------HhHHHH
Confidence 555555555554444333221 111112223345788888889998888888888866633 444444
Q ss_pred HHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHH
Q 000499 844 VEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKA 897 (1460)
Q Consensus 844 veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~ 897 (1460)
+.+-|..|.-+ .-.-.++++-|+..|+.|+++....++.|+++-|+.
T Consensus 613 LqqeNk~LKKk-------~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~ 659 (786)
T PF05483_consen 613 LQQENKALKKK-------ITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKY 659 (786)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44444444322 112245778899999999999999999999877653
|
Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex |
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0017 Score=79.85 Aligned_cols=92 Identities=21% Similarity=0.301 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000499 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQ 616 (1460)
Q Consensus 537 QeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~e 616 (1460)
++++..|..+++.+..-+++=...++.|+.++.+.+ -++..-|.+.+.|+.-|+...+.++-|..-..+|
T Consensus 370 k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~----------D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~E 439 (546)
T PF07888_consen 370 KDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK----------DCNRVQLSENRRELQELKSSLRVAQKEKEQLQEE 439 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888777777777777776543 2223357788888888888888877766656666
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH
Q 000499 617 RNALQQEIYCLKEELNELNKKH 638 (1460)
Q Consensus 617 k~aLq~el~~lkee~~~Ln~k~ 638 (1460)
|..|-+.+++|...++.+-..+
T Consensus 440 kQeL~~yi~~Le~r~~~~~~~~ 461 (546)
T PF07888_consen 440 KQELLEYIERLEQRLDKVADEK 461 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 6666666666666666655443
|
This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region []. |
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00054 Score=84.13 Aligned_cols=195 Identities=23% Similarity=0.241 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000499 546 ELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIY 625 (1460)
Q Consensus 546 Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~ 625 (1460)
.+......+++.......++.++..++++.+++.++-.+|...+-.|..|++.+.....+.-.|.....-+..-|-..++
T Consensus 263 rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLa 342 (546)
T PF07888_consen 263 RLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLA 342 (546)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33334444555555566677777777777777777766666667777777777776665554444433333333322222
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000499 626 CLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLS 705 (1460)
Q Consensus 626 ~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLS 705 (1460)
...-.+..-..+.......+ .-..+.-+..|.+|+.+.+.+.+-......|...|-.+|- ..+
T Consensus 343 d~~l~lke~~~q~~qEk~~l---~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~--------------ke~ 405 (546)
T PF07888_consen 343 DASLELKEGRSQWAQEKQAL---QHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLG--------------KEK 405 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------Hhh
Confidence 22222211111111111110 0001112233333333333333333333333333322221 234
Q ss_pred hhh-HhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhh
Q 000499 706 DLN-VELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLS 757 (1460)
Q Consensus 706 dan-~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~ 757 (1460)
|.| +-|-+.|-.+.+|..+...+.-||-.|..||.-|.--+..+.++|+++.
T Consensus 406 D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~ 458 (546)
T PF07888_consen 406 DCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVA 458 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555 4677777778888889999999999999999999999999999888773
|
This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region []. |
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.0069 Score=75.08 Aligned_cols=253 Identities=20% Similarity=0.230 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHH-Hhhh----------hhHHHHHH
Q 000499 433 EAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQ-KMGS----------QSQELTEK 501 (1460)
Q Consensus 433 ~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~e-kl~~----------~~qeL~eK 501 (1460)
.....++..+-+++.++.+|+.++ ...++++.+...--..+..|+.++..... ++.. ....+...
T Consensus 211 ~~~~~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~ 286 (522)
T PF05701_consen 211 QDAEEWEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASA 286 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHH
Confidence 455667777888888888888877 33334443322222334555555555444 1110 01113333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHh-------hhchHhHHHHHHHHHHH
Q 000499 502 QKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDM-------GTRNQSLQEEVEKVKEE 574 (1460)
Q Consensus 502 ~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~l-------e~~k~~L~eev~~l~EE 574 (1460)
..|++..+..++. ...--+..+..+.+|..|+.+.+..+..+ ...-.+|..++..++-+
T Consensus 287 ~~ELe~ak~~L~~--------------~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~e 352 (522)
T PF05701_consen 287 KKELEEAKKELEK--------------AKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSE 352 (522)
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Confidence 3444444444433 33333333344555555555554444444 33445566666666555
Q ss_pred hccCccccc-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 000499 575 NKGLNELNL-------SSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVES 647 (1460)
Q Consensus 575 n~~L~e~n~-------SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~ 647 (1460)
+.......- .....+..+..|....|..-..... +-..+..++...+-.+.....++.+....+..
T Consensus 353 Lea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~-------E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ea 425 (522)
T PF05701_consen 353 LEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKE-------EVEKAKEEAEQTKAAIKTAEERLEAALKEAEA 425 (522)
T ss_pred HHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543322211 0111333333344333333333222 22244445555555555556666666665555
Q ss_pred cCCCccchhhhHHHHHHHhhhhHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHH
Q 000499 648 VSLNPENFGLSVKELQDENSKLKE-------VYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRD 716 (1460)
Q Consensus 648 l~~~~e~~~~~VkeLQ~~n~~LkE-------~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLRe 716 (1460)
.+..-.---..++.|++.-..-.. .+..-..|=..|..+-+..+.+..+- ...+...++..+.
T Consensus 426 aKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~ee~a~kk------va~A~aqve~ak~ 495 (522)
T PF05701_consen 426 AKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAEELAEKK------VAAAMAQVEAAKA 495 (522)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 544333334556666554432221 23334455556666666666655432 3455555555443
|
Several sequences in this family are described as being myosin heavy chain-like. |
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.0041 Score=77.77 Aligned_cols=378 Identities=14% Similarity=0.140 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhH
Q 000499 402 KAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLH 481 (1460)
Q Consensus 402 ~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~ 481 (1460)
+.+.+.+.|+..+..+++++......+......+-.++.++|-...+|-+...++.+....|.+++..++.+=..+..+.
T Consensus 117 ~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en 196 (1265)
T KOG0976|consen 117 RLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREK 196 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666777777777777777777777777777777777777665544444444
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhch
Q 000499 482 SELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRN 561 (1460)
Q Consensus 482 sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k 561 (1460)
-.+..+.++...-...-.++-.++..-+..-++-..+.++--+.++.|+- +.-.--++.+...+++.++
T Consensus 197 ~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp-----------~rk~~s~i~E~d~~lq~sa 265 (1265)
T KOG0976|consen 197 KALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTP-----------LRKTCSMIEEQDMDLQASA 265 (1265)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-----------HhhhhHHHHHHHHHHHHHH
Confidence 33333333332111111122222222222222212222222222222221 1111222333344455555
Q ss_pred HhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhhHHHHHHHHHhhHHH
Q 000499 562 QSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETI-----------GKLEAEVELRVDQRNALQQEIYCLKEE 630 (1460)
Q Consensus 562 ~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~-----------~kLe~Ev~~~~~ek~aLq~el~~lkee 630 (1460)
.-+.+.+..++--|..|..---.-+-.|+.+|.++..+|..- .-++.|+--+..++-+++.++...+..
T Consensus 266 k~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk 345 (1265)
T KOG0976|consen 266 KEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRK 345 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555566666655555553332223446888888888887433 245556666667777777777766666
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 000499 631 LNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVE 710 (1460)
Q Consensus 631 ~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~E 710 (1460)
.+.+..+...|+..=..+-.++.+++...+...+..++|.+.-.....-=+.|-...=.++-+-..+-.-.|.|+.+-..
T Consensus 346 ~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ek 425 (1265)
T KOG0976|consen 346 AEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEK 425 (1265)
T ss_pred hcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHH
Confidence 66666655555544443333344444444444444444444333222111111111100111112233334556666666
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhh---hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 000499 711 LEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKL---SDENNFLVNSLFDANAEVEGLRAKSKSLEDS 787 (1460)
Q Consensus 711 LegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L---~Ekns~LE~slSd~n~ElE~lr~K~k~lEes 787 (1460)
+|-+..-...++--|...+--|+.--.=|.--++|-..+-.++..+ .++--..|..|.-++++++--..|...+++-
T Consensus 426 ld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkEe 505 (1265)
T KOG0976|consen 426 LDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKEE 505 (1265)
T ss_pred HHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666676666666665555666677777666655433 4555666777888888888888887777766
Q ss_pred HHH
Q 000499 788 CLL 790 (1460)
Q Consensus 788 ~~~ 790 (1460)
.|-
T Consensus 506 iQe 508 (1265)
T KOG0976|consen 506 IQE 508 (1265)
T ss_pred HHH
Confidence 553
|
|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.023 Score=73.28 Aligned_cols=140 Identities=21% Similarity=0.206 Sum_probs=103.5
Q ss_pred hhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 000499 703 SLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSK 782 (1460)
Q Consensus 703 SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k 782 (1460)
-|..+...++..+...+.=+...+-|..+-..+..|..+.=+|++.+......|..+...|+.++.++..+...+..+++
T Consensus 795 eik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~ 874 (1174)
T KOG0933|consen 795 EIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELK 874 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Confidence 33333344444444455556666677888888888899999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHH
Q 000499 783 SLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQ 842 (1460)
Q Consensus 783 ~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~ 842 (1460)
+.-.-......+-+.+........+....+....+-++.+++.+...+.++.+++++...
T Consensus 875 ~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~ 934 (1174)
T KOG0933|consen 875 DQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLK 934 (1174)
T ss_pred HHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHH
Confidence 887777777777777777777777777777777777777777776666666666555443
|
|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.009 Score=75.36 Aligned_cols=205 Identities=21% Similarity=0.257 Sum_probs=110.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000499 618 NALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKN 697 (1460)
Q Consensus 618 ~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkn 697 (1460)
+...+++....+.+..+...++.|..+|+.+-...++-+.-.....++-..-...+... +..-+.+ -
T Consensus 282 E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~eg~~~~~~~~~ee~~~~~~~ipEd----------~es~E~m---~ 348 (617)
T PF15070_consen 282 EMAHQELQEAQEHLEALSQQNQQLQAQLSLMALPGEGDGLESESEEEEAPQPMPSIPED----------LESREAM---V 348 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCCcccccccccccccCcCcccccc----------cccHHHH---H
Confidence 34556777778999999999999999998876655543221111111000000000000 0000001 2
Q ss_pred HHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhh------------hhHHHHHHHhhhhhhhhhhh
Q 000499 698 AVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQ------------LQDVNENLKKLSDENNFLVN 765 (1460)
Q Consensus 698 s~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQ------------Lq~~~~~l~~L~Ekns~LE~ 765 (1460)
+++-..+..+-.|=+.||..++.-..-|+.|......+..+....... -+.+...|++|..+
T Consensus 349 ~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~e~~a~~~~~~~dsV~~E~h~aLq~amekLq~~------ 422 (617)
T PF15070_consen 349 EFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQKEPEAEAPAPGTGGDSVPGETHQALQEAMEKLQSR------ 422 (617)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCcccCCCCCCccchHHHHHHHHHHHHH------
Confidence 456667778888888999999999999999988888877776655432 12222345555444
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHH
Q 000499 766 SLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVE 845 (1460)
Q Consensus 766 slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~ve 845 (1460)
+-|+=.|+-.++..+..||--|--+- .|..+.-.-|-.-+-.-..++.+|.+-++-..-+..+++-.--.+.
T Consensus 423 -f~~~~~e~adl~e~~e~le~~~~ql~-------~et~ti~eyi~ly~~qr~~~k~r~~e~~~~i~~l~~~~e~mk~kl~ 494 (617)
T PF15070_consen 423 -FMDLMEEKADLKERVEKLEHRFIQLS-------GETDTIGEYITLYQSQRAVLKQRHQEKEEYISRLAQDREEMKVKLL 494 (617)
T ss_pred -HHHHHHHHhhHHHHHHHHHHHHHHhc-------cCccchhhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555554443332 2223333333333444445566666655545555555544444444
Q ss_pred HHHH
Q 000499 846 ELQF 849 (1460)
Q Consensus 846 el~~ 849 (1460)
+|+.
T Consensus 495 elq~ 498 (617)
T PF15070_consen 495 ELQE 498 (617)
T ss_pred HHHH
Confidence 4443
|
|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.5e-07 Score=113.95 Aligned_cols=64 Identities=22% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhcC---CCccchhhhHHHHHHHhhhhHHHHHHhHHHHHH
Q 000499 619 ALQQEIYCLKEELNELNKKHQAMVEQVESVS---LNPENFGLSVKELQDENSKLKEVYERDRCEKVA 682 (1460)
Q Consensus 619 aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~---~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~ 682 (1460)
.++.+++.+.-++..|..+..+...-+.+.+ ..|+.+...+..||..+..|.+.+.....+-..
T Consensus 302 ~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~ 368 (722)
T PF05557_consen 302 ELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRE 368 (722)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3444555555555555555543333333333 567788888888888888888777776655443
|
The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A. |
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.055 Score=74.27 Aligned_cols=640 Identities=19% Similarity=0.238 Sum_probs=307.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 234 KAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANI 313 (1460)
Q Consensus 234 kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~L 313 (1460)
+...|...+=+.++.....|..++-.....-.++..++..+.+....+..|...+..|..- +.+..+......+.....
T Consensus 276 r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ky-leL~ee~lr~q~ei~~l~ 354 (1486)
T PRK04863 276 RHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDH-LNLVQTALRQQEKIERYQ 354 (1486)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3455666666666777788888888777777777777777777777777776655544432 223333333344444444
Q ss_pred HHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHH-----------HH---
Q 000499 314 RQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVK---YEE-----------CS--- 376 (1460)
Q Consensus 314 lqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lq---yqQ-----------cL--- 376 (1460)
-.+..+.+++...+..+..+.+.......++..++.++..++..+..+....+...-+ |++ |=
T Consensus 355 ~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~ 434 (1486)
T PRK04863 355 ADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPD 434 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5555566666666666666666666666666666666666666666554433332222 222 20
Q ss_pred -------HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh----------------------HHHHHHHHHHH
Q 000499 377 -------RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGK----------------------LTEEKEALALQ 427 (1460)
Q Consensus 377 -------E~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~----------------------L~eekeal~l~ 427 (1460)
..+..+..++...+..+..+..+...++...+.+.+.... -...-..+..+
T Consensus 435 ~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~ 514 (1486)
T PRK04863 435 LTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQ 514 (1486)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 2333333333333333333333333333333333322111 11122225556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000499 428 YQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGR 507 (1460)
Q Consensus 428 ~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~ 507 (1460)
..++..++..|+.-+.++ ..+.||..+.......--+.+.. |+.--.....+.+.+.+............+...+.
T Consensus 515 ~~~~~~~~~~l~~~~~~q-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~q 590 (1486)
T PRK04863 515 LQQLRMRLSELEQRLRQQ-QRAERLLAEFCKRLGKNLDDEDE---LEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590 (1486)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888887766544 45566666654422221111111 22112222333333333333333333333333334
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccc
Q 000499 508 LWTCIQEE---RLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLS 584 (1460)
Q Consensus 508 Lq~slq~E---~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~S 584 (1460)
|...++.- .-.+..+-.+|..|.--.-...+....+..-.+........+...+..++..+..+.+++..|.-.+-+
T Consensus 591 L~~~i~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~~g 670 (1486)
T PRK04863 591 LQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGS 670 (1486)
T ss_pred HHHHHHHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 44444332 223555555554443222223444444444444444443333333333333333333332222111111
Q ss_pred c---------------------------------HH-------HHHHHHHHHHHHHHH----------------------
Q 000499 585 S---------------------------------AE-------SIKNLQDEILSLRET---------------------- 602 (1460)
Q Consensus 585 S---------------------------------~~-------sIk~LQdEi~~LkE~---------------------- 602 (1460)
. .. .+.++.+=+..+...
T Consensus 671 ~~~~l~~~~~~~~Gvlvsel~~~v~~~~~~~~~A~lg~~~~~iVv~d~~~A~~ai~~L~~~p~d~~li~~~~~~~~~~~~ 750 (1486)
T PRK04863 671 EDPRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPARHAIVVPDLSDAAEQLAGLEDCPEDLYLIEGDPDSFDDSVF 750 (1486)
T ss_pred ccHHHHHHHHhcCCeehhHhhhccCcchHHHHHHHHHhhhCeEEeCCHHHHHHHHHhccCCccceeeecCChhHHhccCc
Confidence 1 00 111221111111100
Q ss_pred -HHHHHHHHHHhhh-----------------------------hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh---hc-
Q 000499 603 -IGKLEAEVELRVD-----------------------------QRNALQQEIYCLKEELNELNKKHQAMVEQVE---SV- 648 (1460)
Q Consensus 603 -~~kLe~Ev~~~~~-----------------------------ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~---~l- 648 (1460)
-+-++..|..++. |++.+...++..-.+..++.+-|+++-.=|. ++
T Consensus 751 ~~~~~~~~v~~~~~~~~~r~s~~p~~p~~gr~are~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 830 (1486)
T PRK04863 751 SVEELEKAVVVKIADRQWRYSRFPEVPLFGRAAREKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVA 830 (1486)
T ss_pred cHHHhcCCeeeeecchhhhhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCcchh
Confidence 0012222222222 3344444444555555555555544432111 11
Q ss_pred -CCCccchhhhHHHHHHHhhhhHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHH
Q 000499 649 -SLNPENFGLSVKELQDENSKLKEVYERDRCEK-------VALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKA 720 (1460)
Q Consensus 649 -~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK-------~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~ 720 (1460)
..+|+. -++.++..-..+......+...- ..+-..++-+.+|.-.-.+|.- -.+..+++.+++.+..
T Consensus 831 f~~~pe~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~--~~~~~~~~~~~~~~~~ 905 (1486)
T PRK04863 831 FEADPEA---ELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLAD--ETLADRVEEIREQLDE 905 (1486)
T ss_pred cCCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcCC--ccHHHHHHHHHHHHHH
Confidence 223332 33444444444444444444333 3333444445555555444433 1256678888888888
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH----------
Q 000499 721 LEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLL---------- 790 (1460)
Q Consensus 721 LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~---------- 790 (1460)
.+++-.. ..+-..-+.+|+..-..|..-.+.+..|...|..+......+..++-.|.+-++-
T Consensus 906 ~~~a~~y--------~~~~~~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~ 977 (1486)
T PRK04863 906 AEEAKRF--------VQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAA 977 (1486)
T ss_pred HHHHHHH--------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 8887754 3455556667777777777777888888888888888888888888877766542
Q ss_pred -hhhhhhhhH----HhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHH---------------h
Q 000499 791 -LDNEKSCLI----TERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQF---------------S 850 (1460)
Q Consensus 791 -l~~e~s~l~----~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~---------------s 850 (1460)
...+.+.+. .+...+..+.....+.++..+++|+.....+..++.-.+...+.+.+... .
T Consensus 978 ~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~ 1057 (1486)
T PRK04863 978 EMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEER 1057 (1486)
T ss_pred hHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHH
Confidence 112333332 33444444444444445555555554444444444443333333333222 2
Q ss_pred HHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhH
Q 000499 851 LDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYE 891 (1460)
Q Consensus 851 L~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~e 891 (1460)
+.+.+.+.....+-+..+-+.||+++.+.+.+.....+.+.
T Consensus 1058 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~ 1098 (1486)
T PRK04863 1058 ARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLR 1098 (1486)
T ss_pred HHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344555555666666677777776655555544444443
|
|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.3e-06 Score=108.45 Aligned_cols=176 Identities=24% Similarity=0.323 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000499 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQ 616 (1460)
Q Consensus 537 QeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~e 616 (1460)
|.+.-.|..++..+.-.+..++....+|+.++..+..+ |.+++..+..++.....|+.-+.+-+.|
T Consensus 349 q~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~--------------~~~l~~~~~~~~~~~~RLerq~~L~~kE 414 (722)
T PF05557_consen 349 QQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKE--------------IEELEASLEALKKLIRRLERQKALATKE 414 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444322 2233333444555555555555555555
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH------HHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH
Q 000499 617 RNALQQEIYCLKEELNELNKKH------QAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIM 690 (1460)
Q Consensus 617 k~aLq~el~~lkee~~~Ln~k~------~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~m 690 (1460)
.+.|..-+.....+....+... ..+.+-+..+.-...-+...|+.+.......+..+.....+-.++-.+...-
T Consensus 415 ~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~ 494 (722)
T PF05557_consen 415 RDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSN 494 (722)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred HHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhc
Confidence 5555554433333322222110 0111111111111111222344444444444444444443333333333222
Q ss_pred H----HHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHH
Q 000499 691 E----KLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQ 726 (1460)
Q Consensus 691 e----kLlEkns~LE~SLSdan~ELegLReK~K~LEesc~ 726 (1460)
+ .+.+++.-|...+..+..+++.|+..+..||.--.
T Consensus 495 ~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~ 534 (722)
T PF05557_consen 495 DRSLSSLSEELNELQKEIEELERENERLRQELEELESELE 534 (722)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 24555555666666666666666666666664433
|
The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A. |
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00061 Score=76.20 Aligned_cols=196 Identities=28% Similarity=0.372 Sum_probs=132.7
Q ss_pred HHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 000499 275 SHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTL 354 (1460)
Q Consensus 275 s~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~L 354 (1460)
..++..+.....++..++.++.+|...+..++.+.+.+--.+..-..++...+.....++.-.+.+..|......++..|
T Consensus 18 ~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~l 97 (237)
T PF00261_consen 18 EEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEEL 97 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444455678889999999999999999999988888888889999999999999888899999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000499 355 KLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEA 434 (1460)
Q Consensus 355 Kqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~k 434 (1460)
...+.....-.+.+--.|..+-.++..++..+..+++ +++.++..+..|...+..+.....+
T Consensus 98 E~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEe-------R~e~~E~ki~eLE~el~~~~~~lk~----------- 159 (237)
T PF00261_consen 98 EQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEE-------RAEAAESKIKELEEELKSVGNNLKS----------- 159 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhchhHHHHHHHHHHHHHHHHH-----------
Confidence 9999888877777777788777777777777555554 3444455555555554443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHh
Q 000499 435 ISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKM 491 (1460)
Q Consensus 435 I~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl 491 (1460)
||....++..-...+...|..+..+|+.+|.+....|.....|....+.|...+
T Consensus 160 ---lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 160 ---LEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444455555555555555555555555554444444444
|
In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B .... |
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.087 Score=69.06 Aligned_cols=147 Identities=18% Similarity=0.275 Sum_probs=104.3
Q ss_pred HHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhH-HHHHHHH
Q 000499 322 KLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDS-KRINKVA 400 (1460)
Q Consensus 322 ~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~-~~ln~~~ 400 (1460)
+++..|.++...-.++..-.+.+..|..-+..++.+...+.++.-..--.|++-=..+..++..|.+++... ..++.+.
T Consensus 317 k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~ 396 (1074)
T KOG0250|consen 317 KLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSEL 396 (1074)
T ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 445555555555556665555555566666666655555554443333333333356677888888888888 7888889
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHH
Q 000499 401 DKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEE 468 (1460)
Q Consensus 401 e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~ 468 (1460)
...++++..|++++.++++...++...++.+..++...+.++.+-+..+..++.-|+.-...|+++..
T Consensus 397 ~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 397 EERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998888888888777777777666666655555544
|
|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.12 Score=70.19 Aligned_cols=242 Identities=20% Similarity=0.299 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHH
Q 000499 542 SLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRV-DQRNAL 620 (1460)
Q Consensus 542 ~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~-~ek~aL 620 (1460)
.|..+++.+...|.........++..+..+...+..+...-.....-++..+..+..++.....++.+....+ ..+..+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 683 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQI 683 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666665555555544444333333455555556666655555555555444 344566
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhc----CCCc-cchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH-H-HHH
Q 000499 621 QQEIYCLKEELNELNKKHQAMVEQVESV----SLNP-ENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI-M-EKL 693 (1460)
Q Consensus 621 q~el~~lkee~~~Ln~k~~~l~e~l~~l----~~~~-e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~-m-ekL 693 (1460)
+..+..+...+..+......+...+..- .... ...+....++......+.........+-..-+..++. + .+|
T Consensus 684 ~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL 763 (1201)
T PF12128_consen 684 EEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQEL 763 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665554444322111 0000 0112222222222222222222222221111111111 0 011
Q ss_pred HHH------HHHHhhhhhhhhHhh---hhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhh
Q 000499 694 LEK------NAVLENSLSDLNVEL---EGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLV 764 (1460)
Q Consensus 694 lEk------ns~LE~SLSdan~EL---egLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE 764 (1460)
..+ ..-+++-+..++.+| +.-|.++..-+.+++..=.....+..++..|..++..++..+..+..+...+.
T Consensus 764 ~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 843 (1201)
T PF12128_consen 764 AGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQ 843 (1201)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 112222222222222 22233344444444444444455666777777777777777776666665555
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 000499 765 NSLFDANAEVEGLRAKSKS 783 (1460)
Q Consensus 765 ~slSd~n~ElE~lr~K~k~ 783 (1460)
..+....++++.-+..++.
T Consensus 844 ~~~~~~~~~le~~~~~~~~ 862 (1201)
T PF12128_consen 844 KEVKQRRKELEEELKALEE 862 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5554444444444443333
|
|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.1 Score=68.87 Aligned_cols=58 Identities=31% Similarity=0.321 Sum_probs=46.2
Q ss_pred HHHHHH---HHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHH
Q 000499 692 KLLEKN---AVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDV 749 (1460)
Q Consensus 692 kLlEkn---s~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~ 749 (1460)
+|+++- --+++.+...+.+++-||.-++.-.++-+-+...+.-+.++.-.|.++|+..
T Consensus 708 ~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe 768 (1317)
T KOG0612|consen 708 KLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQE 768 (1317)
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 455552 3578888889999999998888888888888888888888888888888875
|
|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.1e-06 Score=111.08 Aligned_cols=420 Identities=22% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000499 437 ILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEER 516 (1460)
Q Consensus 437 ~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~ 516 (1460)
+++......-+.+.++..+-+...++..+++.....|..++..|+.+.+.+...+...+ .+..+
T Consensus 169 ~~~~~~~~~~~~l~~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~--------------~~~~~-- 232 (713)
T PF05622_consen 169 DLDSQSRRMYEELSRLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLE--------------GSSEE-- 232 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCC--------------CCCCC--
Confidence 34444445556677777776666666666655555555555555555444433331111 11111
Q ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHH
Q 000499 517 LRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEI 596 (1460)
Q Consensus 517 ~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi 596 (1460)
.-..+..-+...+.+++.|..++..+...+.+....-..++.+|..++.+|..|.-..- ..+.|+||+
T Consensus 233 --------~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~----~a~~LrDEl 300 (713)
T PF05622_consen 233 --------PSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAR----EARALRDEL 300 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhH
Confidence 11122223444566777788888777767777777777778888888888877766533 678999999
Q ss_pred HHHHHHHH---HHHHHHHHhh---hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhH
Q 000499 597 LSLRETIG---KLEAEVELRV---DQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLK 670 (1460)
Q Consensus 597 ~~LkE~~~---kLe~Ev~~~~---~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~Lk 670 (1460)
..|++.-. +++.+|.... .+-..|...+..+++....+......+++++...+ +++..+..+...+..|+
T Consensus 301 D~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~----~~~~qle~~k~qi~eLe 376 (713)
T PF05622_consen 301 DELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR----ALKSQLEEYKKQIQELE 376 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHH
Confidence 99997554 5666666442 33333333333333333333333344444443321 23444444444444444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhh-----hhhhhhHHHHHhh
Q 000499 671 EVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEK-----STLVAEKNSLFSQ 745 (1460)
Q Consensus 671 E~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eK-----S~L~sEK~~LvSQ 745 (1460)
........+...+. ..+..|.+++.-|+..-..+..+.+.||+....|+ |....... +.....-.+|...
T Consensus 377 ~~l~~~~~~~~~l~---~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~--~~~~~~~~l~~~~~~~~~~~~~l~~E 451 (713)
T PF05622_consen 377 QKLSEESRRADKLE---FENKQLEEKLEALEEEKERLQEERDSLRETNEELE--CSQAQQEQLSQSGEESSSSGDNLSAE 451 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hccccccccccccccccccccchhhh
Confidence 44433333322221 12334555555555555555666667776666654 22221110 1222334445555
Q ss_pred hhH--HHHHHHhhhhhhhhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHH
Q 000499 746 LQD--VNENLKKLSDENNFLVNSLFDA-NAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKS 822 (1460)
Q Consensus 746 Lq~--~~~~l~~L~Ekns~LE~slSd~-n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~ 822 (1460)
+.. +..++..|...|..|-...... +..+..+...+.+....+..+..++.........|.+|++.++..+......
T Consensus 452 l~~~~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~~~ 531 (713)
T PF05622_consen 452 LNPAELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQGSK 531 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 442 3445556666666553222222 1112223333333333333333333333344445555555555544333222
Q ss_pred HHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhh----hhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHH
Q 000499 823 YAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHAS----FVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKA 897 (1460)
Q Consensus 823 ~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~----~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~ 897 (1460)
-.+ ...+..+.+..+.++.+.+..+-..++.... ........+.+|+..+..-.++.+-++..|...++|+
T Consensus 532 ~~d----~~~lk~~le~~~~~l~e~~~e~~~~~~~le~l~~~~~~~~~~ki~~Le~~L~~k~~e~~~~eer~k~~leka 606 (713)
T PF05622_consen 532 SED----SSELKQKLEEHLEKLRELKDELQKKREQLEELEQELNQSLSQKIEELEEALQKKEEEMRAMEERYKKYLEKA 606 (713)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred ccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHH
Confidence 221 1222333344444444444333332222211 1222255678888888777777777777776666554
|
The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A. |
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.12 Score=67.78 Aligned_cols=256 Identities=16% Similarity=0.246 Sum_probs=148.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q 000499 243 KNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIR-----QYQ 317 (1460)
Q Consensus 243 kk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~Ll-----qyk 317 (1460)
...+.-.-+=.+.+.-.-.+-.+.+..|+++|..+++....+. .++.+.+.+-+|.++.-=+.+ ||+
T Consensus 213 ~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~--------~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~ 284 (1074)
T KOG0250|consen 213 TESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLE--------QLEDLKENLEQLKAKMAWAWVNEVERQLN 284 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444445555566666666666665433322 355666666667766555555 889
Q ss_pred HHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHH
Q 000499 318 QCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRIN 397 (1460)
Q Consensus 318 qClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln 397 (1460)
-|.+.|...+++....++...........+..+.......++.+..|-++---..+.--.....+-.++..+++.....-
T Consensus 285 ~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~ 364 (1074)
T KOG0250|consen 285 NQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIE 364 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888887777777776666666666666444333211111111222222333333333333332
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHh
Q 000499 398 KVADKAESEVERLKQALGKLTEEK-EALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERS 476 (1460)
Q Consensus 398 ~~~e~~e~ev~~Lk~~l~~L~eek-eal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~ 476 (1460)
..+..+...++.+++.|..+++.. ..+..+..+..+++..|..++-..++.+++|..+.+....++...++.
T Consensus 365 n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee------- 437 (1074)
T KOG0250|consen 365 NSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEE------- 437 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------
Confidence 334445555666666666666555 666677777777777777777777777777777776666666554433
Q ss_pred hHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 477 NQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFV 520 (1460)
Q Consensus 477 ~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~ 520 (1460)
...+...+....+.+.....++..|....-+-...|=
T Consensus 438 -------~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG 474 (1074)
T KOG0250|consen 438 -------KEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG 474 (1074)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc
Confidence 3334444444455566666666666666666655554
|
|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0016 Score=72.84 Aligned_cols=197 Identities=25% Similarity=0.341 Sum_probs=147.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHH
Q 000499 229 SERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETE 308 (1460)
Q Consensus 229 sER~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~E 308 (1460)
..|+..|+.||..|+.-|..|..+=+.+--.+.....|+.+++..........+.|..|....+.-+..|...+.....-
T Consensus 28 ~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~ 107 (237)
T PF00261_consen 28 EKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRR 107 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999998899999999888888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000499 309 REANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLH 388 (1460)
Q Consensus 309 kea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~ 388 (1460)
.+.+--.|..+.-++..++..+..+.+-+...-.++...+.++..+.+.+-.+.. .-.+..++...++.+|..
T Consensus 108 ~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~-------~~~~~~~re~~~e~~i~~ 180 (237)
T PF00261_consen 108 AEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA-------SEEKASEREDEYEEKIRD 180 (237)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh-------hhhhhhHHHHHHHHHHHH
Confidence 8888888888888888888888777766666655555555555555555554432 122233455666666666
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000499 389 SEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCL 432 (1460)
Q Consensus 389 aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~ 432 (1460)
+...+...-.+++.++..+..|...|..|..+.......|..+.
T Consensus 181 L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 181 LEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666655555555544444443
|
In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B .... |
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.013 Score=72.38 Aligned_cols=322 Identities=20% Similarity=0.275 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhchhhH--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhH
Q 000499 263 SLERLSNLESEVSHAREDSKGLSEQ--------ASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAE 334 (1460)
Q Consensus 263 slek~~~LE~~is~aQ~~~~~L~er--------a~~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aq 334 (1460)
-++|.--||.|=+.++-|+.-|... ..+-+.|+.++.-.+..-..++......+..|.+-+..|..++..++
T Consensus 54 YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~ 133 (546)
T KOG0977|consen 54 YIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAE 133 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4889999999999999998877654 33557788888888877777777777777777777777777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 000499 335 ADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQAL 414 (1460)
Q Consensus 335 eeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l 414 (1460)
..+.+..+.+ .....-++.++++-... ...|..|| +++.+|..+..++...+..+++.+
T Consensus 134 k~~~~~re~~-------~~~~~~l~~leAe~~~~-------krr~~~le-------~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 134 KERRGAREKL-------DDYLSRLSELEAEINTL-------KRRIKALE-------DELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHhhhHHHH-------HHHhhhhhhhhhHHHHH-------HHHHHHHH-------HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 6666533322 22222222222221111 12222222 223333333444444454444443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhh
Q 000499 415 GKLTEEKEALALQYQQCLEAISILEHKLARA-EEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGS 493 (1460)
Q Consensus 415 ~~L~eekeal~l~~qq~~~kI~~LE~els~s-QEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~ 493 (1460)
.+=.--.-..+.+.+.+++.|.-+...+++- .++......+.-..+.. .=-..|-.++..+..+-+.......
T Consensus 193 d~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~-----~F~~eL~~Ai~eiRaqye~~~~~nR- 266 (546)
T KOG0977|consen 193 DDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNRE-----YFKNELALAIREIRAQYEAISRQNR- 266 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchH-----HHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 3333333444555555555555555555432 22222222332100000 0001244445555555555544441
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHH
Q 000499 494 QSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKE 573 (1460)
Q Consensus 494 ~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~E 573 (1460)
++|+ ... ..+..++.++-...........||+.++...|..+..+|.+++.++.+|...|..+.-
T Consensus 267 ---------~diE---~~Y---~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ 331 (546)
T KOG0977|consen 267 ---------KDIE---SWY---KRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEY 331 (546)
T ss_pred ---------HHHH---HHH---HHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHh
Confidence 1111 011 1112222222222223334457999999999999999999999999999999999843
Q ss_pred HhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000499 574 ENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKE 629 (1460)
Q Consensus 574 En~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lke 629 (1460)
-|.+-.-+...++-....++-.+++.|..+-.|+.-=+|=|-+|.-||+.-+.
T Consensus 332 ---ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 332 ---QLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred ---hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHH
Confidence 34555556667899999999999999999988887555666666666644333
|
|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.13 Score=66.63 Aligned_cols=587 Identities=19% Similarity=0.184 Sum_probs=289.3
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000499 286 EQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLS-NMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAE 364 (1460)
Q Consensus 286 era~~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is-~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~E 364 (1460)
+|++-.+..++.|+..|.....|+|.-+. ..+-+++ ..++... ..+.++..+.+.++...+|
T Consensus 45 ~r~~hld~aLkec~~qlr~~ree~eq~i~---~~~~~~s~e~e~~~~--------------~le~~l~e~~~~l~~~~~e 107 (769)
T PF05911_consen 45 DRVSHLDGALKECMRQLRQVREEQEQKIH---EAVAKKSKEWEKIKS--------------ELEAKLAELSKRLAESAAE 107 (769)
T ss_pred HHhhhhhHHHHHHHHHHHHhhHHHHHHHH---HHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHhh
Confidence 34444566777777777777777665431 0000000 0111111 2333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--------------HHHHHHHHH
Q 000499 365 KEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEK--------------EALALQYQQ 430 (1460)
Q Consensus 365 KEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eek--------------eal~l~~qq 430 (1460)
..+..--.+.=-.+|..|...-..|+.+..-+..+++-++.+...|+-++.-+.++. ++..-|.-+
T Consensus 108 ~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle 187 (769)
T PF05911_consen 108 NSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLE 187 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 443322222222567777777777777777777777766666666666655444443 335566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHhHHh--------hhhh--------HHHHHhHHHHhhHhhHHHH
Q 000499 431 CLEAISILEHKLARAEEEAQR----------LHSELDNGFA--------KLKG--------AEEKCLLLERSNQTLHSEL 484 (1460)
Q Consensus 431 ~~~kI~~LE~els~sQEEv~R----------L~~Ei~~~~~--------kL~~--------lE~~~~~LE~~~q~L~sE~ 484 (1460)
.+.||..||-+=.+.+.-+++ |+.|++..-. +... .......-...+..|-..+
T Consensus 188 ~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 267 (769)
T PF05911_consen 188 SVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPSRPSSPHDFSPQNPQKRSKESEFLTERL 267 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCCcccccccccccccccchhhhHHHHHHH
Confidence 889999999887776655443 6666655411 0000 0011111123345556666
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HH------HHhhhccH
Q 000499 485 ESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQ---------------------TL------QHLHSQSQ 537 (1460)
Q Consensus 485 e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~---------------------~L------q~LhSqSQ 537 (1460)
..+.+.+.++-+-|..+..|++.-+...-+...|....|.-+. .. ..-+|++-
T Consensus 268 ~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql~~~~~~~~e~~~s~~~~~~~s~~s~se~~~dd~~s~s~ 347 (769)
T PF05911_consen 268 QAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQLKSSGQVSMELSSSQNTSNPPSLTSMSEDGNDDEGSCSD 347 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCchhcccccCCCCCCcccc
Confidence 6677777778888889999999999999999888888888881 00 00111121
Q ss_pred HHHHHHHHHHHHHHH-HH------HHhhhchHhHHHH---HHHHHHHhc-cCcccccc----------------------
Q 000499 538 DELRSLAAELQNRAQ-IL------KDMGTRNQSLQEE---VEKVKEENK-GLNELNLS---------------------- 584 (1460)
Q Consensus 538 eE~~~L~~Ei~~~~~-~L------~~le~~k~~L~ee---v~~l~EEn~-~L~e~n~S---------------------- 584 (1460)
-=..+|..|+..... +. .....+.-+|+++ |.++--=.. +-.+-..+
T Consensus 348 SWAsaLiseldqfk~~k~~~~~~~~~~~~~~i~LMDDFlEmEkLA~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (769)
T PF05911_consen 348 SWASALISELDQFKNEKVISRSSSKTISSSDIDLMDDFLEMEKLAALSRDSSSPSSCSSSEVDSDSSVTLESSSKRESVL 427 (769)
T ss_pred hhHHHHhchHHHhccccccccccccCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccccccccccccccccc
Confidence 122456555554311 11 0111123344432 333211000 00000000
Q ss_pred --------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcC-
Q 000499 585 --------------SAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVS- 649 (1460)
Q Consensus 585 --------------S~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~- 649 (1460)
+..-.-..+.++...+.+.+.++..++--...... .-.+... ......+.+.+....
T Consensus 428 ~~~~~~~~~~~wLqsv~k~v~~q~~~s~i~~ILedI~~al~~~~~~~~~---~~~~~~~-----~~~~~sL~e~~~s~~~ 499 (769)
T PF05911_consen 428 ESDKLSDRIPEWLQSVLKLVLEQKEVSKISEILEDIEIALDSINNSSNC---DDDSEEY-----ESMEASLVEESKSMIE 499 (769)
T ss_pred cchhhcccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccccc---ccccchh-----hhhhhhHHHHHHHHHh
Confidence 00011112233333333333332222210000000 0000000 000011222222221
Q ss_pred --CCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHH
Q 000499 650 --LNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQN 727 (1460)
Q Consensus 650 --~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~s 727 (1460)
-++......|-+|-..-..+--+|.-.-..|+.+-...+...-.+++.-..+.||.|+.++.++++..+......-..
T Consensus 500 ~s~eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E 579 (769)
T PF05911_consen 500 ISQELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFDGDSSSEAE 579 (769)
T ss_pred hcccHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhccccccc
Confidence 122222333344444444555677777778888888888888888888888999999888888887766554443222
Q ss_pred HHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHH
Q 000499 728 LLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVS 807 (1460)
Q Consensus 728 L~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~s 807 (1460)
....-..-...... +...++.+......|+..|....-.++.++.+++++|..+..+..+-..+..-...+..
T Consensus 580 ~~~~dea~~~~~~e-------l~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ 652 (769)
T PF05911_consen 580 INSEDEADTSEKKE-------LEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAET 652 (769)
T ss_pred ccchHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111222222222 22334444555566666677777777777777777777776666666655555555666
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhH--------
Q 000499 808 QLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFL-------- 879 (1460)
Q Consensus 808 Ql~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~L-------- 879 (1460)
||..+....+.++.++++ ++.|.......+..|..-|.-++.-|.++..= --+||.+++..
T Consensus 653 ql~~~~e~~e~le~~~~~-------~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~k----c~~Le~el~r~~~~~~~~~ 721 (769)
T PF05911_consen 653 QLKAMKESYESLETRLKD-------LEAEAEELQSKISSLEEELEKERALSEELEAK----CRELEEELERMKKEESLQQ 721 (769)
T ss_pred HHHHHHHHHHHHhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhH----HHHHHHHHHhhhcccchhh
Confidence 665555555444444443 33344444444444444444444444332211 11222222211
Q ss_pred --HHHhhhhhh-hhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000499 880 --QEEGLCRKK-AYEEELDKALDAQIEIFITQKYIQDLK 915 (1460)
Q Consensus 880 --qEe~~~r~~-~~eeE~dk~~~AqieifiLq~~l~Dl~ 915 (1460)
.++...+.. ++---=.|...-|==|+.|-+.|+-|.
T Consensus 722 ~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLksLa 760 (769)
T PF05911_consen 722 LANEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKSLA 760 (769)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 222222222 344445566666777777777776655
|
The function of this family is unknown. |
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.13 Score=65.66 Aligned_cols=181 Identities=19% Similarity=0.202 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhh
Q 000499 678 CEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLS 757 (1460)
Q Consensus 678 ~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~ 757 (1460)
.|=..|.+.++.|++++.. .++-+-+.-.....+|...-++.++|.+=..+.+.+..+.+-+++|+.....++-
T Consensus 265 ~e~~~L~Ssl~e~~~~l~~---~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~--- 338 (698)
T KOG0978|consen 265 REMRHLISSLQEHEKLLKE---YERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKKLR--- 338 (698)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3445666777777777665 5566667777777788888788787777666666666677777776655432111
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHH
Q 000499 758 DENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEK 837 (1460)
Q Consensus 758 Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek 837 (1460)
..+.....+.+.+...+.-..++.-.....+..+...+...-+.++.+-+++-+..+ .-+-.|.
T Consensus 339 --------------~~~~~~~~~~~~~~~~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~--~ka~~E~ 402 (698)
T KOG0978|consen 339 --------------SKLLESAKKLKILLREKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQ--VKARAET 402 (698)
T ss_pred --------------HHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHH--HHHHHHH
Confidence 011111111111111111111111122223333333344444444444444443333 2255677
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHH
Q 000499 838 ESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEE 882 (1460)
Q Consensus 838 ~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe 882 (1460)
+.+.+++..+...-..+..+. .....+.+|...+.++.-|+..
T Consensus 403 e~l~q~l~~~~k~e~~e~~k~--~~d~~~r~~~~~~~~~e~Lqk~ 445 (698)
T KOG0978|consen 403 ESLLQRLKALDKEERSEIRKQ--ALDDAERQIRQVEELSEELQKK 445 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--hhHHHHHhHHHHHHHHHHHHHH
Confidence 777777776655544443322 2334455555555555555443
|
|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.097 Score=67.07 Aligned_cols=390 Identities=22% Similarity=0.254 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHH
Q 000499 396 INKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLER 475 (1460)
Q Consensus 396 ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~ 475 (1460)
+..+|..++.+++.++..+.....+++.+....+.+......+|.+..+-.++++-++.-=..+.+-..++|+.+-.|..
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQK 111 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQK 111 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34445556666666666667777777777777777777777777777766666666665445555555666666666666
Q ss_pred hhHhhH---HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHhhhccHHHHHHHHHHHH
Q 000499 476 SNQTLH---SELESMVQKMGSQSQELTEKQKELGRLWTCIQEE-RLRF---VEAETAFQTLQHLHSQSQDELRSLAAELQ 548 (1460)
Q Consensus 476 ~~q~L~---sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E-~~k~---~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~ 548 (1460)
.++.|+ .|-+.+.. ++.....|++-|+..+++- +.|- -+-|-||.+|+... |.-.+|.-|+.
T Consensus 112 qvs~Lk~sQvefE~~Kh-------ei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~ER----eqk~~LrkEL~ 180 (717)
T PF09730_consen 112 QVSVLKQSQVEFEGLKH-------EIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSER----EQKNALRKELD 180 (717)
T ss_pred HHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 666553 34444433 4444445555555555442 1111 12344555544333 33344544444
Q ss_pred HHHH--H---HHHhhhchHhH--HHH-----------HHHHHHHhcc--Ccccc----c----cc----------HHHHH
Q 000499 549 NRAQ--I---LKDMGTRNQSL--QEE-----------VEKVKEENKG--LNELN----L----SS----------AESIK 590 (1460)
Q Consensus 549 ~~~~--~---L~~le~~k~~L--~ee-----------v~~l~EEn~~--L~e~n----~----SS----------~~sIk 590 (1460)
...- - ++.+..+-..+ -.+ -....-.+.+ +.+.+ . ++ ...+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lv~DLfS 260 (717)
T PF09730_consen 181 QHLNIESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSLVSDLFS 260 (717)
T ss_pred HhcCccccccccchhhcccccccccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCCcccchhhh
Confidence 3111 0 11111110000 000 0001011111 11000 0 00 01122
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhh
Q 000499 591 NLQ-DEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKL 669 (1460)
Q Consensus 591 ~LQ-dEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~L 669 (1460)
.|+ .||-+|+.....++.|..-=+.--...|..+-.-+.++.....+...|.+.|.++.- +.. -++.+......
T Consensus 261 El~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~----l~~-~ke~~~~~d~~ 335 (717)
T PF09730_consen 261 ELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK----LQE-DKEQQSAEDSE 335 (717)
T ss_pred hcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcc-chhhhhhhhcc
Confidence 222 345555555555554444333333344444444444444444444444444433311 000 00111111111
Q ss_pred HHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhh
Q 000499 670 KEVYERDRCEKVALLEKLEI--MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQ 747 (1460)
Q Consensus 670 kE~~s~~~~EK~~L~~kLq~--mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq 747 (1460)
++..+... ...-.+.+ .+-|--++........++..||..||.+...++..+ ..++..+-+.++
T Consensus 336 ~~~~s~~d----~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~----------~~ek~~~~~e~q 401 (717)
T PF09730_consen 336 KERDSHED----GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERY----------KQEKDRLESEVQ 401 (717)
T ss_pred cccccccc----cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 11111000 01111111 233344555555566666666777777666666622 234445555555
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHH
Q 000499 748 DVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKG 815 (1460)
Q Consensus 748 ~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~ 815 (1460)
.+..++..+....-.=...+.+++.++-.++.-..+...++.+-.++-..+..+++.|..+|......
T Consensus 402 ~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNge 469 (717)
T PF09730_consen 402 NLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGE 469 (717)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 55444444433332234488899999999999999999999999999999999999999999986644
|
Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus |
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.011 Score=67.91 Aligned_cols=166 Identities=23% Similarity=0.291 Sum_probs=92.7
Q ss_pred hhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH-HHHHHHHHhhhhhhhhHHhHHHHHHhHHHHH
Q 000499 735 LVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSK-SLEDSCLLLDNEKSCLITERVNLVSQLDIAR 813 (1460)
Q Consensus 735 L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k-~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~ 813 (1460)
|..|-..|-.|+. ..-.+..=.-..+.|...+.++.++.+..-.+.+ +++. .+...-..+......-...+..+.
T Consensus 140 heeEi~~L~~~~~-~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~---~y~~k~~~l~~~~~~~~~~~~~~~ 215 (312)
T PF00038_consen 140 HEEEIEELREQIQ-SSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEE---WYQSKLEELRQQSEKSSEELESAK 215 (312)
T ss_dssp HHHHHHTTSTT-----------------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccc-cccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhh---hcccccccccccccccccccchhH
Confidence 4445555556654 1111111112234466666666666665555554 2222 222222333333444445555556
Q ss_pred HHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHH
Q 000499 814 KGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEE 893 (1460)
Q Consensus 814 ~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE 893 (1460)
..+..+...+..+.....+++..+..+-..|.++...+..+.+.| ...|+.+|.++..++........+|++=
T Consensus 216 ~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~-------~~~i~~le~el~~l~~~~~~~~~ey~~L 288 (312)
T PF00038_consen 216 EELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEY-------QAEIAELEEELAELREEMARQLREYQEL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHH-------HHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666665544 5678999999999999999999999887
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 000499 894 LDKALDAQIEIFITQKYI 911 (1460)
Q Consensus 894 ~dk~~~AqieifiLq~~l 911 (1460)
+|--+.=.+||-.-.+.|
T Consensus 289 l~~K~~Ld~EIatYR~LL 306 (312)
T PF00038_consen 289 LDVKLALDAEIATYRKLL 306 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 777666666666555544
|
They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A .... |
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0084 Score=68.86 Aligned_cols=286 Identities=22% Similarity=0.283 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhc-cCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000499 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENK-GLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVD 615 (1460)
Q Consensus 537 QeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~-~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ 615 (1460)
.+++..|+-.+-.-..++..|+..|..|..+|..+..-.. ............|..++..|..+...+.+++.+++--..
T Consensus 3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 3566677777777778888888888888888777644321 011111111223445555555444444444443332222
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHH----HhHHHHHHHHHHHHH--
Q 000499 616 QRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYE----RDRCEKVALLEKLEI-- 689 (1460)
Q Consensus 616 ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s----~~~~EK~~L~~kLq~-- 689 (1460)
+-+.+...+.........+......+...+... ...--+|+..+..|++++. .|..|-..|..++..
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~-------~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~ 155 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEE-------TLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSV 155 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-------hhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence 222222222222222222222222222222222 2222233333333333332 233344444444431
Q ss_pred -HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhh
Q 000499 690 -MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLF 768 (1460)
Q Consensus 690 -mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slS 768 (1460)
++-=.-...-|...|.++.++.+..-.+.+ ++.-..+......+.. +....+..+..+.+.+..+-..+.
T Consensus 156 ~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~--~e~e~~y~~k~~~l~~-------~~~~~~~~~~~~~~E~~~~r~~~~ 226 (312)
T PF00038_consen 156 TVEVDQFRSSDLSAALREIRAQYEEIAQKNR--EELEEWYQSKLEELRQ-------QSEKSSEELESAKEELKELRRQIQ 226 (312)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeecccccccchhhhhhHHHHHHHHHhhhh--hhhhhhcccccccccc-------cccccccccchhHhHHHHHHhhhh
Confidence 000001112234444444444443333322 2333333333333332 222233345555666677777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhh----hhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHH
Q 000499 769 DANAEVEGLRAKSKSLEDSCLLLDNEKS----CLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKE 838 (1460)
Q Consensus 769 d~n~ElE~lr~K~k~lEes~~~l~~e~s----~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~ 838 (1460)
.+.+++++++.+...|+..+..+...+. .+......+..+|..++..+...-.+|.+|.+--..|..||.
T Consensus 227 ~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIa 300 (312)
T PF00038_consen 227 SLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIA 300 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 7777777777777777777766554443 355777888888888888888888888888888888888874
|
They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A .... |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.24 Score=65.41 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=17.5
Q ss_pred HHHHHHHHHH------HHHhhcccCCCcchhhhhh
Q 000499 962 VLRVQLYQLL------EILEIDADHGCETKMEQDQ 990 (1460)
Q Consensus 962 ~Lr~gi~qv~------k~L~i~~~~g~~d~~~~e~ 990 (1460)
.||-+++.++ ..|=||.+-|+.|.-..+.
T Consensus 827 alrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~ 861 (908)
T COG0419 827 ALRLALSDLLQGRARLELLFLDEPFGTLDEERLEK 861 (908)
T ss_pred HHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHH
Confidence 3455555543 4466788888777555554
|
|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.2 Score=62.96 Aligned_cols=122 Identities=16% Similarity=0.294 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCC----------ccchhh
Q 000499 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLN----------PENFGL 657 (1460)
Q Consensus 588 sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~----------~e~~~~ 657 (1460)
.+..+++.|..|-+..++ .+.-+....+....+...+..+...+..+..++..|+-+ ..++..
T Consensus 283 ~~~~i~~~Id~Lyd~lek-------E~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lek 355 (569)
T PRK04778 283 KNEEIQERIDQLYDILER-------EVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEK 355 (569)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHH
Confidence 344555555555544433 333444555555555555555555555555555555444 233333
Q ss_pred hHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHH
Q 000499 658 SVKELQDENSKLKEVYERDRCEKVALLEKLEI-MEKLLEKNAVLENSLSDLNVELEGVRDKVKA 720 (1460)
Q Consensus 658 ~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~-mekLlEkns~LE~SLSdan~ELegLReK~K~ 720 (1460)
.+++++.....+.+.+...... .+.++. ++.+.++..-+++........+.+||..-..
T Consensus 356 eL~~Le~~~~~~~~~i~~~~~~----ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~e 415 (569)
T PRK04778 356 QLESLEKQYDEITERIAEQEIA----YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELE 415 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333333333322 344443 4455555555555555555555555554433
|
|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.41 Score=66.17 Aligned_cols=240 Identities=18% Similarity=0.220 Sum_probs=119.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHH
Q 000499 390 EEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1460)
Q Consensus 390 ee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~ 469 (1460)
......+...++.....+..++..+..+..+...+..+++.+...+..+...+...|.++..+...+ ..+..++.-
T Consensus 354 ~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i----~~Le~~~~~ 429 (1486)
T PRK04863 354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAV----QALERAKQL 429 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3333334444444455555555555555555555555555555555555555555555555554443 334444444
Q ss_pred HhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhhccHHHH
Q 000499 470 CLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRF---------VEAETAFQTLQHLHSQSQDEL 540 (1460)
Q Consensus 470 ~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~---------~EaE~aL~~Lq~LhSqSQeE~ 540 (1460)
|..=--+...|....++...++.....++.....++..++..+..-.... +....+.+....+..+ -.+.
T Consensus 430 ~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~-~~~~ 508 (1486)
T PRK04863 430 CGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRR-LREQ 508 (1486)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH-hHHH
Confidence 43111112223333344444443333333333333333333332211110 2233333333222111 2455
Q ss_pred HHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 000499 541 RSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNAL 620 (1460)
Q Consensus 541 ~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aL 620 (1460)
+.++.....+...|.+++.+.+.-+.-.+.+.+=+..+ ...+.+...+..+ -..+-...+.++.++.--...+..+
T Consensus 509 ~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (1486)
T PRK04863 509 RHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRL-GKNLDDEDELEQL---QEELEARLESLSESVSEARERRMAL 584 (1486)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777778887775444333333333322222 2334443334444 4444455556666777667788889
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 000499 621 QQEIYCLKEELNELNKKH 638 (1460)
Q Consensus 621 q~el~~lkee~~~Ln~k~ 638 (1460)
++.+-.+...+..+..++
T Consensus 585 r~~~~qL~~~i~~l~~~a 602 (1486)
T PRK04863 585 RQQLEQLQARIQRLAARA 602 (1486)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 999988999999888866
|
|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.28 Score=63.12 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAE 609 (1460)
Q Consensus 537 QeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~E 609 (1460)
++-..-|..||..+.+-.++++.+..+-++.|+....-|....+. +.+|||.|--++....-.+.+
T Consensus 489 ~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRel-------va~Lqdqlqe~~dq~~Sseee 554 (1243)
T KOG0971|consen 489 RELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFREL-------VAHLQDQLQELTDQQESSEEE 554 (1243)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhHHH
Confidence 444556788888888888899999888888888765555544444 556666666666544444333
|
|
| >KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.27 Score=62.51 Aligned_cols=230 Identities=19% Similarity=0.189 Sum_probs=134.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 235 AEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIR 314 (1460)
Q Consensus 235 Ae~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~Ll 314 (1460)
...|..+++.....+...+---.+|..---.|+..+|.+...+|.-..++++....+++|+..+...+-.+..+.-|---
T Consensus 83 stqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~ 162 (1265)
T KOG0976|consen 83 STQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAH 162 (1265)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhH
Confidence 34566677777777777777777777777778888888888888888888877777778777777766655555332211
Q ss_pred --------HHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000499 315 --------QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKL 386 (1460)
Q Consensus 315 --------qykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki 386 (1460)
-.++| +.|..++.++.+.-+++..+|... +.+++-|+.++... ..||-+-+++
T Consensus 163 eIf~~~~~L~nk~-~~lt~~~~q~~tkl~e~~~en~~l---e~k~~k~~e~~~~n---------------D~~sle~~~~ 223 (1265)
T KOG0976|consen 163 DIFMIGEDLHDKN-EELNEFNMEFQTKLAEANREKKAL---EEKLEKFKEDLIEK---------------DQKSLELHKD 223 (1265)
T ss_pred HHHHHHHHHhhhh-hHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcc---------------hHHHHHHHHH
Confidence 12222 334445555554444444444332 22222232222211 1222222332
Q ss_pred hhhhHh----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 000499 387 LHSEED----SKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLE-------AISILEHKLARAEEEAQRLHSE 455 (1460)
Q Consensus 387 ~~aee~----~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~-------kI~~LE~els~sQEEv~RL~~E 455 (1460)
.+...+ +..|..+ ...+..+++.+.++++.-..++.....+++ +=+.|..++|+..+-|+-++.+
T Consensus 224 q~~tq~vl~ev~QLss~----~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qee 299 (1265)
T KOG0976|consen 224 QENTQKVLKEVMQLSSQ----KQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEE 299 (1265)
T ss_pred HHHHHHHHHHHHHHHHh----HhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 222221 2223332 445566777777777776666666655544 4566778999999999999999
Q ss_pred HHhHHhh----hhhHHHHHhHHHHhhHhhHHHHHHH
Q 000499 456 LDNGFAK----LKGAEEKCLLLERSNQTLHSELESM 487 (1460)
Q Consensus 456 i~~~~~k----L~~lE~~~~~LE~~~q~L~sE~e~L 487 (1460)
++.+.+- ..+.|+.-.+|+..|..+..+.-.+
T Consensus 300 Ld~lkqt~t~a~gdseqatkylh~enmkltrqkadi 335 (1265)
T KOG0976|consen 300 LDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADI 335 (1265)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776553 4456666666665555555444333
|
|
| >PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.6e-06 Score=104.91 Aligned_cols=112 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHH
Q 000499 769 DANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQ 848 (1460)
Q Consensus 769 d~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~ 848 (1460)
.++.++..++..+.+++..+.. ++......|...|..-...++..+.+|..-.+|+- .++..+..++
T Consensus 551 e~~~e~~~~~~~le~l~~~~~~------~~~~ki~~Le~~L~~k~~e~~~~eer~k~~lekak-------~vi~~Ld~k~ 617 (713)
T PF05622_consen 551 ELKDELQKKREQLEELEQELNQ------SLSQKIEELEEALQKKEEEMRAMEERYKKYLEKAK-------EVIKTLDPKQ 617 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH-------HHhhccChhc
Confidence 4445555555555554433221 12233344445555555555555555543333332 2333333332
Q ss_pred HhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhh
Q 000499 849 FSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDA 900 (1460)
Q Consensus 849 ~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~A 900 (1460)
-. +..-...=.+++.+.+..|..|..+..-.+...+.|+.=++.|
T Consensus 618 ~~-------~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k~~~~~EekLi~sa 662 (713)
T PF05622_consen 618 NP-------SSPEIQALKKQLQEKDRRIESLEKELEKSKQMREQEEKLIVSA 662 (713)
T ss_dssp ----------------------------------------------------
T ss_pred cC-------ChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 22 1111122233677777777777777655555555565555544
|
The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A. |
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.28 Score=61.77 Aligned_cols=188 Identities=19% Similarity=0.289 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhh
Q 000499 415 GKLTEEKEALALQYQQ-CLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGS 493 (1460)
Q Consensus 415 ~~L~eekeal~l~~qq-~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~ 493 (1460)
++-.+.++.....++. ....+...+..+..+.+.+.+.+.= .....+++++......|.....+..+++.|.+.-..
T Consensus 60 Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~--~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~ 137 (569)
T PRK04778 60 GQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFR--KAKHEINEIESLLDLIEEDIEQILEELQELLESEEK 137 (569)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777777777 5666777888888887777765421 222223333333333444455555666655554443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhc-----cHHHHHHHHHHHHHHHHHHHHh
Q 000499 494 QSQELTEKQKELGRLWTCIQEE-----------RLRFVEAETAFQTLQHLHSQ-----SQDELRSLAAELQNRAQILKDM 557 (1460)
Q Consensus 494 ~~qeL~eK~~Ei~~Lq~slq~E-----------~~k~~EaE~aL~~Lq~LhSq-----SQeE~~~L~~Ei~~~~~~L~~l 557 (1460)
...++.+....-..++..+-.. -.++-..+..|..|..+-+. ..+-+..+..++..+...+..+
T Consensus 138 nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~i 217 (569)
T PRK04778 138 NREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEI 217 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444332 34455556666666555433 3555555555555555544443
Q ss_pred -------hh----chHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHH
Q 000499 558 -------GT----RNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKL 606 (1460)
Q Consensus 558 -------e~----~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kL 606 (1460)
.+ .-.+|..-.+.+.++.-.|.+.++.+ -|..+++.+.........+
T Consensus 218 P~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~--~i~~l~~~i~~~~~~l~~l 275 (569)
T PRK04778 218 PELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEK--EIQDLKEQIDENLALLEEL 275 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHH--HHHHHHHHHHHHHHHHHhc
Confidence 11 22234444555556655666666655 5777777777766655554
|
|
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.18 Score=64.87 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=19.5
Q ss_pred cchhhHHHHHHHhhhhhhHHHHhhHHHHHHH
Q 000499 1183 CINNELEEKVRLKDGKLEDVQMQNSLLKQSL 1213 (1460)
Q Consensus 1183 ~~~~eL~~~v~~l~~kle~~e~en~~Lk~~l 1213 (1460)
.-..++++-+.+|-.....+|.++.+||+-+
T Consensus 1019 ~Ke~efeetmdaLq~di~~lEsek~elKqrl 1049 (1243)
T KOG0971|consen 1019 KKEKEFEETMDALQADIDQLESEKAELKQRL 1049 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3344556666666666666777777777754
|
|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.36 Score=61.72 Aligned_cols=161 Identities=22% Similarity=0.255 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhhhhhh-----hhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhH-----H--------------HHHhh
Q 000499 690 MEKLLEKNAVLENSLSD-----LNVELEGVRDKVKALEEVCQNLLAEKSTLVAEK-----N--------------SLFSQ 745 (1460)
Q Consensus 690 mekLlEkns~LE~SLSd-----an~ELegLReK~K~LEesc~sL~~eKS~L~sEK-----~--------------~LvSQ 745 (1460)
|...++-...+.+-..+ +++|+++++.+++++...-.+=......=..+| . .|++.
T Consensus 376 ~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e 455 (698)
T KOG0978|consen 376 NELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSE 455 (698)
T ss_pred HHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556555555555555 888888888888877766555222111111111 2 44555
Q ss_pred hhHHHHHHHhhhhhhhhh-------hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHH
Q 000499 746 LQDVNENLKKLSDENNFL-------VNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKD 818 (1460)
Q Consensus 746 Lq~~~~~l~~L~Ekns~L-------E~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~ 818 (1460)
+++++.-+++..+.|+.| +-.++.+=.|......+.+-|. .++..|..|+..+...-..
T Consensus 456 ~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~--------------~ek~~l~~~i~~l~~~~~~ 521 (698)
T KOG0978|consen 456 METIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLR--------------EEKSKLEEQILTLKASVDK 521 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 555555555555554444 2233344444444444444432 3333333333333333334
Q ss_pred HHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhc
Q 000499 819 LEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQL 864 (1460)
Q Consensus 819 lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~ 864 (1460)
+......++++-..++....+...++.-+..++..-+..-.++.++
T Consensus 522 ~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~ 567 (698)
T KOG0978|consen 522 LELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQS 567 (698)
T ss_pred HHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555555555555555555555444444444333
|
|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.43 Score=60.54 Aligned_cols=121 Identities=21% Similarity=0.281 Sum_probs=59.6
Q ss_pred HHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 378 MISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKE---ALALQYQQCLEAISILEHKLARAEEEAQRLHS 454 (1460)
Q Consensus 378 ~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eeke---al~l~~qq~~~kI~~LE~els~sQEEv~RL~~ 454 (1460)
.+|.+..++-+.+..+.++-..+.+.+.++.--...+........ +......++.+.++..+..++.+ .+...++.
T Consensus 166 s~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~-~ele~i~~ 244 (716)
T KOG4593|consen 166 SLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLS-EELEAINK 244 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh-hHHHHHHH
Confidence 345555555555555555555444444444333333332222222 22233345666666666666654 34555666
Q ss_pred HHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000499 455 ELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWT 510 (1460)
Q Consensus 455 Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~ 510 (1460)
.++...+.+..++ ..+..+.+++..+.+.. .-....+.|+..|+.
T Consensus 245 ~~~dqlqel~~l~-------~a~~q~~ee~~~~re~~----~tv~~LqeE~e~Lqs 289 (716)
T KOG4593|consen 245 NMKDQLQELEELE-------RALSQLREELATLRENR----ETVGLLQEELEGLQS 289 (716)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHH
Confidence 6666666665544 34555566665554444 233344444444443
|
|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.71 Score=62.25 Aligned_cols=296 Identities=16% Similarity=0.143 Sum_probs=153.2
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh-hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000499 897 ALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQES-SLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEILE 975 (1460)
Q Consensus 897 ~~~AqieifiLq~~l~Dl~~kn~~ll~EcQk~~eas-~~se~lIseLe~E~~~~q~e~~~L~~~~~~Lr~gi~qv~k~L~ 975 (1460)
+-.-++..-+++..+.|++.- ..=+|-+...--+ -....=+-++-.|-...+.+...+...+..++..+....+..+
T Consensus 780 ~~~l~~~~~~~e~~~~d~~~~--~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~ 857 (1294)
T KOG0962|consen 780 AETLQTDVTVLERFLKDLKLR--EKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREIS 857 (1294)
T ss_pred HHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566667777766532 2223333222222 2333445667777777778888888888888887777666544
Q ss_pred hcccCCCcchhhhhhhhHHHHHHHHhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 000499 976 IDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQ 1055 (1460)
Q Consensus 976 i~~~~g~~d~~~~e~~l~~~l~~i~~~i~~l~~s~~~~q~enq~~~vEnsvL~t~L~ql~~e~~~L~~Ek~~L~~E~~~~ 1055 (1460)
=-...+.+-+.. ++-+..-+..+..+...+.+++++-....- -+-.++..++.....|+.=-.+.+++-...
T Consensus 858 ~l~~~~~e~k~~-----~~~~~~~l~~~~qle~~~~~l~e~~~~~~s---~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~ 929 (1294)
T KOG0962|consen 858 RLINLRNELKEE-----KQKIERSLARLQQLEEDIEELSEEITRLDS---KVKELLERIQPLKVELEEAQSEKEELKNER 929 (1294)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHhhHhhhcchhhhHHHHHHHHHHHHHHh
Confidence 333333221111 123444444445555555555555544443 334444444444433333223333332222
Q ss_pred HHHHHHhhhhhhhHHHHhHHHHHHHHhhhhhHHHHHHHHHH-----HHHHHhHhHHHHHHhH---------hhhhhhhhh
Q 000499 1056 SEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRS-----LHMLLSELQGAQQSLQ---------DQNCKVLDE 1121 (1460)
Q Consensus 1056 s~q~l~Lq~e~~eLle~n~qL~~~~~~~~~ree~lk~E~~~-----l~~~l~~l~~s~~~lq---------~e~~~~~~e 1121 (1460)
.-.-.+.|+..+++.+++..|+.-..-+..-....+.++.. +...+.+++.-....+ +-+.+--=.
T Consensus 930 ~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~ 1009 (1294)
T KOG0962|consen 930 NTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLT 1009 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22445566777888888888777777666666666554431 1111222222111111 111111112
Q ss_pred hhhHHHHhhhhHHhhhhhhhhhhhHHHHHhhhccchhhhhhhHHHHHHHHHHHHHhHhhhhcchhhHHHHHHHhhhhh--
Q 000499 1122 KKSLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKL-- 1199 (1460)
Q Consensus 1122 ~~sL~k~~~~l~e~~~~lEden~~~l~E~i~~~~ls~~~~~~~~Ek~~~l~~L~e~l~~L~~~~~eL~~~v~~l~~kl-- 1199 (1460)
...|..++..+..+.+.++-++.. +-+..-..+-+-|.+..+.+.+.++++.+.++....-.
T Consensus 1010 ~~~l~~q~~e~~re~~~ld~Qi~~----------------~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~ 1073 (1294)
T KOG0962|consen 1010 LRNLERKLKELERELSELDKQILE----------------ADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKK 1073 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------hHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHH
Confidence 345556666666666666655544 22344456677888889999999888888776432211
Q ss_pred --------hHHHHhhHHHHHHHHhhHH
Q 000499 1200 --------EDVQMQNSLLKQSLEKSEN 1218 (1460)
Q Consensus 1200 --------e~~e~en~~Lk~~le~~~~ 1218 (1460)
.-..++++|.+++++...-
T Consensus 1074 ~k~eL~~~~~kd~~~nyr~~~ie~~tt 1100 (1294)
T KOG0962|consen 1074 LKQELREKDFKDAEKNYRKALIELKTT 1100 (1294)
T ss_pred HHHHhhhhhhccHHHHHHHHHHHHHHH
Confidence 1234456666666554443
|
|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.18 Score=62.62 Aligned_cols=122 Identities=24% Similarity=0.240 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHH
Q 000499 405 SEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSEL 484 (1460)
Q Consensus 405 ~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~ 484 (1460)
.++..|+.+...+++++..+..+++++..-+..++..+....+-.+..-.++........+.|.++-.+-.....+..++
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~ 353 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREEL 353 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 44667777777888888888888888877777777777665555544444444444333333555444443344443333
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 000499 485 ESMVQKMGSQSQELTEKQKELGRLWTCIQEER--LRFVEAETAFQTL 529 (1460)
Q Consensus 485 e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~--~k~~EaE~aL~~L 529 (1460)
-.. .....-.+..+-.|++.|+..+-.-. ....+.|..|..+
T Consensus 354 ~~~---~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~l 397 (511)
T PF09787_consen 354 SRQ---KSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQL 397 (511)
T ss_pred HHh---cChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhc
Confidence 222 22234456777888888888777633 2233444444443
|
They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 []. |
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.44 Score=59.79 Aligned_cols=153 Identities=18% Similarity=0.282 Sum_probs=93.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHH
Q 000499 414 LGKLTEEKEALALQYQQCLEAISILEHKLA------------------RAEEEAQRLHSELDNGFAKLKGAEEKCLLLER 475 (1460)
Q Consensus 414 l~~L~eekeal~l~~qq~~~kI~~LE~els------------------~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~ 475 (1460)
-..|......++.+......+|++|+..+- -.+++|+-+-.+++.-+.++-++|..|..|..
T Consensus 184 e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ 263 (629)
T KOG0963|consen 184 EAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLRE 263 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788888888888888855443 34555555667778888888888888887754
Q ss_pred hhHhhHHH--------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Q 000499 476 SNQTLHSE--------LESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAEL 547 (1460)
Q Consensus 476 ~~q~L~sE--------~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei 547 (1460)
+.....+. .+.....+-.++.++.+.-++|.+++.+..++...+. .+++.|..++
T Consensus 264 ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~-----------------~qI~~le~~l 326 (629)
T KOG0963|consen 264 QLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHK-----------------AQISALEKEL 326 (629)
T ss_pred HHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHH
Confidence 44433322 2222333335667777777777777777777555444 3344444444
Q ss_pred HHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccc
Q 000499 548 QNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLS 584 (1460)
Q Consensus 548 ~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~S 584 (1460)
......|+.+.+.-++. ..+..++.|...|....|+
T Consensus 327 ~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ief~ 362 (629)
T KOG0963|consen 327 KAKISELEELKEKLNSR-SDYEEIKKELSILKAIEFG 362 (629)
T ss_pred HHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHhhcC
Confidence 44444444444333322 5666677777777666666
|
|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.51 Score=59.64 Aligned_cols=453 Identities=21% Similarity=0.257 Sum_probs=229.0
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhh
Q 000499 419 EEKEALALQYQQC----LEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQ 494 (1460)
Q Consensus 419 eekeal~l~~qq~----~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~ 494 (1460)
.+.+..+--|.+. ..=|.+.|..--++.....-|+..+.....++.++|..+ +.+.......+..+
T Consensus 176 ~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leeey----------~~E~n~kEkqvs~L 245 (786)
T PF05483_consen 176 YEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEEY----------KKEVNDKEKQVSLL 245 (786)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----------HHHhhhHHHHHHHH
Confidence 3444444444433 333455566666666666667777778888887777652 33333344444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHH
Q 000499 495 SQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEE 574 (1460)
Q Consensus 495 ~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EE 574 (1460)
.-.+.+|-+.+..|.--+++=..++-+-+.+-....-+..+|++++.+|..+++....-+.........|+..+.....-
T Consensus 246 ~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~ 325 (786)
T PF05483_consen 246 QTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKT 325 (786)
T ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777777777666666666665556566678899999999999988888888777777777766665444
Q ss_pred hccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 000499 575 NKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPEN 654 (1460)
Q Consensus 575 n~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~ 654 (1460)
+-.|++..-+. +.-+..+... |..--..++--++.+++-+.-=..|.....+++
T Consensus 326 ~~qlt~eKe~~----------~Ee~nk~k~~-------~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~l--------- 379 (786)
T PF05483_consen 326 LIQLTEEKEAQ----------MEELNKAKAQ-------HSFVVTELQTTICNLKELLTTEQQRLKKNEDQL--------- 379 (786)
T ss_pred HHHHHHhHHHH----------HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------
Confidence 33333222111 0001100000 100111112222222211111111222222222
Q ss_pred hhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhh
Q 000499 655 FGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKST 734 (1460)
Q Consensus 655 ~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~ 734 (1460)
...+.+||..+..|.+... ...-|. -+|+.+.+.|.+++-|= ...+.|+-.|..|++---.
T Consensus 380 -k~l~~eLqkks~eleEmtk-~k~~ke---~eleeL~~~L~e~qkll--------------~ekk~~eki~E~lq~~eqe 440 (786)
T PF05483_consen 380 -KILTMELQKKSSELEEMTK-QKNNKE---VELEELKKILAEKQKLL--------------DEKKQFEKIAEELQGTEQE 440 (786)
T ss_pred -HHHHHHHHHhhHHHHHHHH-HhhhhH---HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 2234555555555543321 111111 11233333222222110 0011122222222211110
Q ss_pred hhhhHHHHHhhhhHHHHHHHhhhhhhhhhh-------hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHH
Q 000499 735 LVAEKNSLFSQLQDVNENLKKLSDENNFLV-------NSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVS 807 (1460)
Q Consensus 735 L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE-------~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~s 807 (1460)
|+-=|++....+.+|....+..- ...-++++|++.-..|..+|=..|..+.-++..+..+...+..
T Consensus 441 -------l~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~ 513 (786)
T PF05483_consen 441 -------LTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMAL 513 (786)
T ss_pred -------HHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11113333333333333332221 2234567788877788888999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHH-------HHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHH
Q 000499 808 QLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVE-------ELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQ 880 (1460)
Q Consensus 808 Ql~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~ve-------el~~sL~~e~q~h~~~~k~se~~l~~lE~~is~Lq 880 (1460)
.+..+++.+.+.++.-.....-.-+|.....-+-+.|+ ....-+...-.+...-.++-+..+...+.++..|.
T Consensus 514 elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~le 593 (786)
T PF05483_consen 514 ELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILE 593 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHH
Confidence 99999999999877666555444444444433333333 33333332223333333344445555566666665
Q ss_pred HHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 000499 881 EEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENC 947 (1460)
Q Consensus 881 Ee~~~r~~~~eeE~dk~~~AqieifiLq~~l~Dl~~kn~~ll~EcQk~~eas~~se~lIseLe~E~~ 947 (1460)
.++...++ ||+ ---+||.+|.+.|=.|=-..=+-..-+.+.+.-|+.|+.|..
T Consensus 594 nk~~~LrK------------qvE--nk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e 646 (786)
T PF05483_consen 594 NKCNNLRK------------QVE--NKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELE 646 (786)
T ss_pred HHHHHHHH------------HHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543333 233 124555555555555544333333334444545554444433
|
Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex |
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.73 Score=60.35 Aligned_cols=349 Identities=19% Similarity=0.159 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhh
Q 000499 682 ALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENN 761 (1460)
Q Consensus 682 ~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns 761 (1460)
.++.+||.|...--+.-.-.+.|.+++.+|.++...... |..|+.+-....-+.+.+.-+++..+ ...+...+-
T Consensus 671 ~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~k----f~~l~~ql~l~~~~l~l~~~r~~~~e--~~~~~~~~~ 744 (1174)
T KOG0933|consen 671 DLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQK----FRDLKQQLELKLHELALLEKRLEQNE--FHKLLDDLK 744 (1174)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCh--HhhHHHHHH
Confidence 367788888777777778888888888888777655443 34444444444444444444444321 223333333
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHH
Q 000499 762 FLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTL 841 (1460)
Q Consensus 762 ~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~ 841 (1460)
.+..-+-++..++...+..++..++....+-.......+.+ .-+++.+++++....-+...-..+-++..
T Consensus 745 ~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~r----------e~rlkdl~keik~~k~~~e~~~~~~ek~~ 814 (1174)
T KOG0933|consen 745 ELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANR----------ERRLKDLEKEIKTAKQRAEESSKELEKRE 814 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555554444432222111111111 11233333333333333333334444444
Q ss_pred HHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhh
Q 000499 842 QKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSL 921 (1460)
Q Consensus 842 ~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~AqieifiLq~~l~Dl~~kn~~l 921 (1460)
+.++.+ ..|+++......+++.++-.++.+++.|..+.-......--..+....+|-++....+.+-|.-.-=-.+
T Consensus 815 ~e~e~l----~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~ 890 (1174)
T KOG0933|consen 815 NEYERL----QLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGL 890 (1174)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhh
Confidence 444443 3455566666678888899999999999999888888888888888889999999888888877666778
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcccCCCcchhhhhhhhHHHHHHHH
Q 000499 922 LFECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLL-EILEIDADHGCETKMEQDQSHQTLLDQVT 1000 (1460)
Q Consensus 922 l~EcQk~~eas~~se~lIseLe~E~~~~q~e~~~L~~~~~~Lr~gi~qv~-k~L~i~~~~g~~d~~~~e~~l~~~l~~i~ 1000 (1460)
+..|++..-+....+-=+.+|+.|....+.+.......+.+|...+--.- ..=.+...++.-| ++-.- ..-..
T Consensus 891 ~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yD-f~~~~-----p~~ar 964 (1174)
T KOG0933|consen 891 LTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYD-FESYD-----PHEAR 964 (1174)
T ss_pred hhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccc-cccCC-----HhHHH
Confidence 89999999998888888888999999888888888888888765322211 1122323222222 11111 12223
Q ss_pred hHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Q 000499 1001 GKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERNALAEEFRIQSEQFVVL 1062 (1460)
Q Consensus 1001 ~~i~~l~~s~~~~q~enq~~~vEnsvL~t~L~ql~~e~~~L~~Ek~~L~~E~~~~s~q~l~L 1062 (1460)
.+|..|+.-+...+. ++++ -.+..|.--.....+|.+=+++++.+....-.-..-|
T Consensus 965 e~l~~Lq~k~~~l~k-~vn~-----~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~l 1020 (1174)
T KOG0933|consen 965 EELKKLQEKKEKLEK-TVNP-----KNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKL 1020 (1174)
T ss_pred HHHHHhhHHHHHHHh-hcCH-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444433322 1111 1244566667778888888888887765444433333
|
|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.59 Score=60.48 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=14.5
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHH
Q 000499 666 NSKLKEVYERDRCEKVALLEKLEI 689 (1460)
Q Consensus 666 n~~LkE~~s~~~~EK~~L~~kLq~ 689 (1460)
-..+-+.|.....+-.+.++.|.+
T Consensus 684 ~d~v~~l~k~~~~~a~~~~~~l~~ 707 (980)
T KOG0980|consen 684 SDRVNDLCKKCGREALAFLVSLSS 707 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666666666666666554
|
|
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.68 Score=59.77 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 000499 430 QCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLW 509 (1460)
Q Consensus 430 q~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq 509 (1460)
.+..+|..|+.++.++..++.|...|++.+.....++=..|..+|.+...|+.|+.....+=+-+.+.- .|++.=+
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy----selEeEN 106 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY----SELEEEN 106 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHH
Confidence 456678888888888888888888888888888888888888888888888888887766553333333 3333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhh
Q 000499 510 TCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMG 558 (1460)
Q Consensus 510 ~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le 558 (1460)
.++|+.+.-.-+.-+.|-.| +-|+++|..|++.+...|.+..
T Consensus 107 islQKqvs~Lk~sQvefE~~-------Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 107 ISLQKQVSVLKQSQVEFEGL-------KHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 55555433222222222221 2345555555555555554443
|
Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.82 Score=60.60 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHH
Q 000499 899 DAQIEIFITQKYIQDLKEKNFSLLF 923 (1460)
Q Consensus 899 ~AqieifiLq~~l~Dl~~kn~~ll~ 923 (1460)
.+.+..+++++.++.+.......|.
T Consensus 754 ~~~~~~~~~~~~~~~i~~~~~~~l~ 778 (908)
T COG0419 754 KAGLRADILRNLLAQIEAEANEILS 778 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345778888888777665544443
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.06 Score=66.46 Aligned_cols=139 Identities=13% Similarity=0.210 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHH
Q 000499 302 LARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAV--VKYEECSRMI 379 (1460)
Q Consensus 302 la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~--lqyqQcLE~I 379 (1460)
+..++.+.+....++++=...+..+++.+.....+.....+-+.+++.++..++.++..+........ ..+.-|-.-|
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~ 294 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQI 294 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcC
Confidence 44444444444444444444455555555444433333334444455555555555555543333221 0122344555
Q ss_pred HHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 380 SALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQR 451 (1460)
Q Consensus 380 S~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~R 451 (1460)
+..+..+..+. ..+..++.++..+...+..+++..+ ++.+...++..++..+......+..
T Consensus 295 ~~~~~~~~~l~-------d~i~~l~~~l~~l~~~i~~~~~~~~----~~~~~~~~i~el~~~i~~~~~~i~~ 355 (562)
T PHA02562 295 SEGPDRITKIK-------DKLKELQHSLEKLDTAIDELEEIMD----EFNEQSKKLLELKNKISTNKQSLIT 355 (562)
T ss_pred CCcHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333 3444445555555555443333332 3444444444444444444444333
|
|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.63 Score=58.28 Aligned_cols=343 Identities=19% Similarity=0.232 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhc----cCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 537 QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENK----GLNELNLSSAESIKNLQDEILSLRETIGKLEAEVEL 612 (1460)
Q Consensus 537 QeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~----~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~ 612 (1460)
+.|+..|+-.+-.-.+++..||..|..|..+|..+..--. +++..+ -.|+...+-....-
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~y----------e~El~~ar~~l~e~------ 104 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKY----------EAELATARKLLDET------ 104 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHh----------hhhHHHHHHHHHHH------
Confidence 5677778888888888999999999999988888744211 222221 12333333322221
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 000499 613 RVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEK 692 (1460)
Q Consensus 613 ~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mek 692 (1460)
-.++..++.++..++++++.+-.++......+ .+.+..+.+.......+.-+.+....-...+-+.+. .
T Consensus 105 -~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~-------~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~---~ 173 (546)
T KOG0977|consen 105 -ARERAKLEIEITKLREELKELRKKLEKAEKER-------RGAREKLDDYLSRLSELEAEINTLKRRIKALEDELK---R 173 (546)
T ss_pred -HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH---H
Confidence 12444566777777788887777776554433 233444444444444444444333333333322221 2
Q ss_pred HHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHH-H-Hhh-hhhhhhhhhhhhh
Q 000499 693 LLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNEN-L-KKL-SDENNFLVNSLFD 769 (1460)
Q Consensus 693 LlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~-l-~~L-~Ekns~LE~slSd 769 (1460)
|--+|+-|...|-.+...+|.=+---.+++..|+.|..+...+...-..-|-++...-.+ + ... ..=...|-.++-|
T Consensus 174 Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~e 253 (546)
T KOG0977|consen 174 LKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIRE 253 (546)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHH
Confidence 333455555555555555555444455566666666666655544333333333222111 0 111 1112345555556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHH
Q 000499 770 ANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQF 849 (1460)
Q Consensus 770 ~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~ 849 (1460)
+.++-+.-...-+.=-++.+-.+-....-.+++.+. -.+..++++.........|-.|.++++.-...+..+++.|++
T Consensus 254 iRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~--~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ 331 (546)
T KOG0977|consen 254 IRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANV--EQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEY 331 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccc--hhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHh
Confidence 666666655555443333333333333333333332 234566777778888888888888888888888888999999
Q ss_pred hHHHHHHHhhhhhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000499 850 SLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLK 915 (1460)
Q Consensus 850 sL~~e~q~h~~~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~AqieifiLq~~l~Dl~ 915 (1460)
+|.-+ .++.+.-+++.+.+|-.+.++|.-.-.+|+.=+|--+.=+.||-+-.+.|.--+
T Consensus 332 ql~e~-------~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLegee 390 (546)
T KOG0977|consen 332 QLDED-------QRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLEGEE 390 (546)
T ss_pred hhhhh-------hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhcccc
Confidence 98887 566788899999999999999999999999999999999999988888775433
|
|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.056 Score=63.09 Aligned_cols=180 Identities=24% Similarity=0.293 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcC------------------CC
Q 000499 590 KNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVS------------------LN 651 (1460)
Q Consensus 590 k~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~------------------~~ 651 (1460)
+.|-..|..|-+.+..++.+++-..+.-.-|++++ .-.+.|..-|..-.+.-...+ ++
T Consensus 86 qsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL----~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (306)
T PF04849_consen 86 QSLLEQNQDLSERNEALEEQLGAALEQVEQLRHEL----SMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQ 161 (306)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCcHhhhcccccCCCccccccccccccccchh
Confidence 66777777777888888888887777778888888 555666666643333222221 23
Q ss_pred ccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH-H--------------HHHHHHHHHHhhhhhhhhHhhhhHHH
Q 000499 652 PENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI-M--------------EKLLEKNAVLENSLSDLNVELEGVRD 716 (1460)
Q Consensus 652 ~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~-m--------------ekLlEkns~LE~SLSdan~ELegLRe 716 (1460)
.+.++.++|.|+++|..|+.+.+.++.|...+=++=|. | -.|.++-+-=-.-...-.-|+-.|..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999888877655433 1 12222222222222223333444444
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHH-------HHhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 000499 717 KVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNEN-------LKKLSDENNFLVNSLFDANAEVEGLRAK 780 (1460)
Q Consensus 717 K~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~-------l~~L~Ekns~LE~slSd~n~ElE~lr~K 780 (1460)
.+.+|+.-|+.+ ..|...|..+|.++... +.+|.+||+..-.-|-+++.|+..+|.+
T Consensus 242 qivdlQ~r~k~~-------~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 242 QIVDLQQRCKQL-------AAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 444455444444 34455555665555433 5566666666666666666666666643
|
HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 []. |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.14 Score=63.16 Aligned_cols=106 Identities=13% Similarity=0.202 Sum_probs=46.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHH
Q 000499 230 ERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSN-LESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETE 308 (1460)
Q Consensus 230 ER~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~-LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~E 308 (1460)
++..+++.+|+.++..|..++.+-+.. +..++++.. ....+...+.+...+...+...+.++..++..+..+..+
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~----~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~ 249 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTY----NKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD 249 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445577777777777777776665421 111111111 012233333333333333444444555555555444433
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHhHHHHHH
Q 000499 309 REANIRQYQQCLDKLSNMEKNISRAEADAVE 339 (1460)
Q Consensus 309 kea~LlqykqClE~Is~LE~~~s~aqeeak~ 339 (1460)
.+..--.++.+...+..++..+...+.....
T Consensus 250 i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~ 280 (562)
T PHA02562 250 IEDPSAALNKLNTAAAKIKSKIEQFQKVIKM 280 (562)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222334444444444444444444443
|
|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.05 E-value=2.2 Score=56.13 Aligned_cols=330 Identities=18% Similarity=0.253 Sum_probs=203.7
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 234 KAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANI 313 (1460)
Q Consensus 234 kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~L 313 (1460)
.-..+|..|...+..|..||+.+...|...+.+--.||-+|...|.++.+-.+.-.-+....+.++..+..-+.|..+-+
T Consensus 269 ~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~ 348 (1200)
T KOG0964|consen 269 DLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIE 348 (1200)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555666677899999999999999999999999999999887776666777788888888888888888888
Q ss_pred HHHHHHHHHHHhHHHHHhHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHH
Q 000499 314 RQYQQCLDKLSNMEKNISRAEADAVELS-------------DRASKAEIEAQTLKLDLARIE-------AEKEAAVVKYE 373 (1460)
Q Consensus 314 lqykqClE~Is~LE~~~s~aqeeak~ln-------------eRa~~AE~E~~~LKqel~~l~-------~EKEa~~lqyq 373 (1460)
-.|+.-+++=+.+-..+..++...+.+. +|=+=...++..|+.-+.... .|-+.+.-.|.
T Consensus 349 Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~ 428 (1200)
T KOG0964|consen 349 PKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELK 428 (1200)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 8888888877777777777777555443 222223333333333322221 12222222233
Q ss_pred HHHHHHHHHHhhh-------hhhhHhHHHHHHH---------------------HHHHHHHHHHHHHH------------
Q 000499 374 ECSRMISALEDKL-------LHSEEDSKRINKV---------------------ADKAESEVERLKQA------------ 413 (1460)
Q Consensus 374 QcLE~IS~LE~ki-------~~aee~~~~ln~~---------------------~e~~e~ev~~Lk~~------------ 413 (1460)
.-++.|-.|+..| ..+....-.++.. +.+++..+..-++.
T Consensus 429 ~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nG 508 (1200)
T KOG0964|consen 429 EKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANG 508 (1200)
T ss_pred HHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 3333333333322 2222222222222 22222222222221
Q ss_pred --------------------------------------------------------------------------------
Q 000499 414 -------------------------------------------------------------------------------- 413 (1460)
Q Consensus 414 -------------------------------------------------------------------------------- 413 (1460)
T Consensus 509 i~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~ 588 (1200)
T KOG0964|consen 509 IDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKARD 588 (1200)
T ss_pred hHHHHHHHHHhcccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCchhh
Confidence
Q ss_pred -----------------------------------HhhHH-----------------------------------HHHHH
Q 000499 414 -----------------------------------LGKLT-----------------------------------EEKEA 423 (1460)
Q Consensus 414 -----------------------------------l~~L~-----------------------------------eekea 423 (1460)
|..|. ...=.
T Consensus 589 v~yp~~sdaiPli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe 668 (1200)
T KOG0964|consen 589 VEYPKDSDAIPLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLE 668 (1200)
T ss_pred ccCCCCCCccchHHHhCcchhhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccCCccccchhhhhhHHH
Confidence 00000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHH
Q 000499 424 LALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQK 503 (1460)
Q Consensus 424 l~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~ 503 (1460)
++-........+..|+..+.....++++...+|+..+..+..+|.+........-.+..++-.+.+...+....+..+..
T Consensus 669 ~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~ 748 (1200)
T KOG0964|consen 669 LLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGK 748 (1200)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH
Confidence 11222233444555555555566666666667777777777777777777777778888888888888888888889999
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHh
Q 000499 504 ELGRLWTCIQEE--RLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQS 563 (1460)
Q Consensus 504 Ei~~Lq~slq~E--~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~ 563 (1460)
.++.+..+++.- .....+++-.-..+-.|...-++.+.+|..+|..+..++.-+-...-+
T Consensus 749 ~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~ 810 (1200)
T KOG0964|consen 749 ELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERID 810 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999998888874 344455555444445666666899999999999998888755444333
|
|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
Probab=96.99 E-value=2.3 Score=55.55 Aligned_cols=119 Identities=25% Similarity=0.252 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhh
Q 000499 690 MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFD 769 (1460)
Q Consensus 690 mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd 769 (1460)
++++-....-|+-.|..++..++.++.+++..|..-..|+.+-.....=+..+-.||+.+.. .+..|+..+.+
T Consensus 598 lE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e-------~~e~le~~~~~ 670 (769)
T PF05911_consen 598 LEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKE-------SYESLETRLKD 670 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhH
Confidence 44554455677888899999999999999999999999999988888888889999999854 45556888889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHH
Q 000499 770 ANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKG 815 (1460)
Q Consensus 770 ~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~ 815 (1460)
+.+|+..++.|+..|++-+...+..+..+.+.-..|.-|+......
T Consensus 671 ~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~ 716 (769)
T PF05911_consen 671 LEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKE 716 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999888888777888777776533
|
The function of this family is unknown. |
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.097 Score=57.52 Aligned_cols=187 Identities=20% Similarity=0.278 Sum_probs=98.7
Q ss_pred hHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Q 000499 458 NGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQ 537 (1460)
Q Consensus 458 ~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQ 537 (1460)
++..-+.+++..+..|..+|.+|+...+.+.+-.+.+..++......+..+|..++
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~------------------------ 60 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQ------------------------ 60 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Confidence 34445556666666666666666666666666665555555444444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000499 538 DELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQR 617 (1460)
Q Consensus 538 eE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek 617 (1460)
..+++..|++.++..++.++-.+..|...-+.+..|+..| ..-|..||+|+.++..-..++..-..-=..++
T Consensus 61 -~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L-------~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~ 132 (193)
T PF14662_consen 61 -KAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSL-------VAEIETLQEENGKLLAERDGLKKRSKELATEK 132 (193)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhh
Confidence 2344555666666666666666666555555554444433 33477888888888776666554443223566
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH
Q 000499 618 NALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIM 690 (1460)
Q Consensus 618 ~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~m 690 (1460)
.+||..+|.-..-+..-+. +. +.. -..+.+|---+....-....++.||.-|-++|..|
T Consensus 133 ~~Lq~Ql~~~e~l~~~~da----~l---~e~-------t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 133 ATLQRQLCEFESLICQRDA----IL---SER-------TQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHHHHHHHHHHH----HH---HHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6777776444333322221 11 111 11233333333334444455566666666776443
|
|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
Probab=96.92 E-value=2.3 Score=54.40 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=71.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhH-HhhhhhHHHHHhHH----H
Q 000499 407 VERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLH-------SELDNG-FAKLKGAEEKCLLL----E 474 (1460)
Q Consensus 407 v~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~-------~Ei~~~-~~kL~~lE~~~~~L----E 474 (1460)
-+.|..+|..|+++.++++.-.+-+.-.+.+|..-+.=+.+++.+=- .+-... ...|+--=++++.| .
T Consensus 244 r~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLk 323 (739)
T PF07111_consen 244 REELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLK 323 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36677778888888888777777777777777766666665554421 111111 12222222233322 3
Q ss_pred HhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 475 RSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQT 528 (1460)
Q Consensus 475 ~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~ 528 (1460)
..--........+..+++.+..++.....+-.-|+.+++| -.|+..+..
T Consensus 324 aQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqD-----K~AElevER 372 (739)
T PF07111_consen 324 AQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQD-----KAAELEVER 372 (739)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHH
Confidence 3333344455667777878888888888888888888888 556555544
|
The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm |
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.70 E-value=3.2 Score=52.87 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHhhhhhHHHHHhHH
Q 000499 424 LALQYQQCLEAISILEHKLARAEEEAQR----LHSELDNGFAKLKGAEEKCLLL 473 (1460)
Q Consensus 424 l~l~~qq~~~kI~~LE~els~sQEEv~R----L~~Ei~~~~~kL~~lE~~~~~L 473 (1460)
+..+-+-++..+.+|-..++.+.-.+-| ++-||..+..+|..+|.+|..|
T Consensus 578 ar~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 578 ARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455667777777777765544433 7899999999999999998865
|
|
| >PF14662 CCDC155: Coiled-coil region of CCDC155 | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.57 Score=51.76 Aligned_cols=165 Identities=24% Similarity=0.369 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHhhcCCCccchhhhHHHHHH
Q 000499 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNK---KHQAMVEQVESVSLNPENFGLSVKELQD 664 (1460)
Q Consensus 588 sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~---k~~~l~e~l~~l~~~~e~~~~~VkeLQ~ 664 (1460)
+|.+|+.-+.+|.+.+.+|...|..--+....|..++..++..+..+.. .+.++.+++ +.++..++.|++
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEl-------edLk~~~~~lEE 81 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEEL-------EDLKTLAKSLEE 81 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 5777777777777777777777775555566677777666666665542 334455555 444778888888
Q ss_pred HhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHH----------HHHHHHHhhhh
Q 000499 665 ENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEE----------VCQNLLAEKST 734 (1460)
Q Consensus 665 ~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEe----------sc~sL~~eKS~ 734 (1460)
.+.+|...+.....|.-.|+.+++.++ ++| --+.++.+|+..+++.|-. .|.+|...+..
T Consensus 82 ~~~~L~aq~rqlEkE~q~L~~~i~~Lq---een-------~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da 151 (193)
T PF14662_consen 82 ENRSLLAQARQLEKEQQSLVAEIETLQ---EEN-------GKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDA 151 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-------hHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877666543 222 2334555555555555522 24445555666
Q ss_pred hhhhHHHHHhhhhHHHHH----HHhhhhhhhhhhhhhhh
Q 000499 735 LVAEKNSLFSQLQDVNEN----LKKLSDENNFLVNSLFD 769 (1460)
Q Consensus 735 L~sEK~~LvSQLq~~~~~----l~~L~Ekns~LE~slSd 769 (1460)
+++||..-+.+|..+-+- -..|--+.+.||..++.
T Consensus 152 ~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 152 ILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666655555543222 22344444445544443
|
|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=1.4 Score=53.74 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhH
Q 000499 404 ESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGA 466 (1460)
Q Consensus 404 e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~l 466 (1460)
......|......+......+.....+.......|+....+.+..+.+|..++......+..+
T Consensus 176 ~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l 238 (428)
T PRK11637 176 KQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSEL 238 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444455555555555555555555666666666666666655555544444443
|
|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.63 E-value=3.3 Score=52.09 Aligned_cols=225 Identities=17% Similarity=0.183 Sum_probs=112.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHH---------HHHH-HHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHH
Q 000499 232 MGKAEMEILTLKNALAKLEAEKEAGLLQYR---------QSLE-RLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEA 301 (1460)
Q Consensus 232 ~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~---------~sle-k~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~ 301 (1460)
..+-+.....+-++|..|++.-+...-+|+ .+++ ++..|.+.+++.|.-+.++..+-...+..+..++..
T Consensus 223 k~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~E 302 (581)
T KOG0995|consen 223 KHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSE 302 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344455555566666666666666666665 2333 333466666666666666666666666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH---hHhHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000499 302 LARLETEREANIRQYQQCLDKLSNMEKNI---SRAEADAVELSD-------RASKAEIEAQTLKLDLARIEAEKEAAVVK 371 (1460)
Q Consensus 302 la~Lq~Ekea~LlqykqClE~Is~LE~~~---s~aqeeak~lne-------Ra~~AE~E~~~LKqel~~l~~EKEa~~lq 371 (1460)
+...+.|.++-- .....|.+++ .-+-+|++..|. -++++..+...|.+++-.++-+.+
T Consensus 303 ie~kEeE~e~lq-------~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~----- 370 (581)
T KOG0995|consen 303 IEEKEEEIEKLQ-------KENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIE----- 370 (581)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----
Confidence 766666655432 2233333332 334455554442 233333333333333333332222
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHHHHHH-HHHHHH----------HHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 372 YEECSRMISALEDKLLHSEEDSKRINKV-ADKAES----------EVERLKQA-LGKLTEEKEALALQYQQCLEAISILE 439 (1460)
Q Consensus 372 yqQcLE~IS~LE~ki~~aee~~~~ln~~-~e~~e~----------ev~~Lk~~-l~~L~eekeal~l~~qq~~~kI~~LE 439 (1460)
..+..++.++.+...-++++.-. ++++.+ ..-.++.. .-.+.+..+....++.+.+.+..+|+
T Consensus 371 -----~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq 445 (581)
T KOG0995|consen 371 -----DFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQ 445 (581)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444555555544444444433 222211 00111111 12355666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHH
Q 000499 440 HKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLL 473 (1460)
Q Consensus 440 ~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~L 473 (1460)
.-++....-+.-+...+-...-.|+.++..|...
T Consensus 446 ~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~ 479 (581)
T KOG0995|consen 446 EHFSNKASTIEEKIQILGEIELELKKAESKYELK 479 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555555554444444444455555554443
|
|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.62 E-value=5.3 Score=54.45 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=30.0
Q ss_pred HHHHhHhhhhhhhhhhhhHHHHhhhhHHhhhhhhhhhhh
Q 000499 1107 AQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCV 1145 (1460)
Q Consensus 1107 s~~~lq~e~~~~~~e~~sL~k~~~~l~e~~~~lEden~~ 1145 (1460)
++..++.|-.++.++...+.+.+..+.-+.-..+.+++-
T Consensus 820 t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~ 858 (1294)
T KOG0962|consen 820 TVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISR 858 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888888887777766666665
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.61 E-value=2 Score=55.47 Aligned_cols=89 Identities=17% Similarity=0.116 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 000499 542 SLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQ 621 (1460)
Q Consensus 542 ~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq 621 (1460)
.++.+.....++|..+..+-+...+.|..+.|.+..|..+--|+.+++-=.+-+. .+++-+..-...|++.++
T Consensus 845 ~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~-------~nl~lki~s~kqeqee~~ 917 (970)
T KOG0946|consen 845 NLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSETLSKALKTVKS-------ENLSLKIVSNKQEQEELL 917 (970)
T ss_pred chhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhc-------ccchhcccchhhhHHHHH
Confidence 3666677777777777766667777777777777777777666654443333333 233333333445666666
Q ss_pred HHHHhhHHHHHHHHHH
Q 000499 622 QEIYCLKEELNELNKK 637 (1460)
Q Consensus 622 ~el~~lkee~~~Ln~k 637 (1460)
-.++.+++.|..|-+.
T Consensus 918 v~~~~~~~~i~alk~~ 933 (970)
T KOG0946|consen 918 VLLADQKEKIQALKEA 933 (970)
T ss_pred HHHhhHHHHHHHHHHH
Confidence 6666666655555443
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.42 Score=61.25 Aligned_cols=88 Identities=13% Similarity=0.166 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHH
Q 000499 420 EKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELD----------NGFAKLKGAEEKCLLLERSNQTLHSELESMVQ 489 (1460)
Q Consensus 420 ekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~----------~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~e 489 (1460)
...+|..+..++.+++...-+.|++-..++.-|+..+. .|.+.+++. ..++.++..|...+..
T Consensus 679 ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~-------~eel~a~~~e~k~l~~ 751 (970)
T KOG0946|consen 679 MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQ-------NEELNAALSENKKLEN 751 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCC-------hHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444443 333333332 3446666677777776
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHH
Q 000499 490 KMGSQSQELTEKQKELGRLWTCIQE 514 (1460)
Q Consensus 490 kl~~~~qeL~eK~~Ei~~Lq~slq~ 514 (1460)
..--+..+|+.+..-++..+....+
T Consensus 752 ~q~~l~~~L~k~~~~~es~k~~~~~ 776 (970)
T KOG0946|consen 752 DQELLTKELNKKNADIESFKATQRS 776 (970)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 6656677777777777777777664
|
|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.45 E-value=4.6 Score=51.70 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=55.1
Q ss_pred cccccCCCccchhhhhhhhhcccccccccCCChhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 196 GRARKGLNFHDAEENEQLQHNESYDIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVS 275 (1460)
Q Consensus 196 ~~~~~~l~f~~~~~e~s~l~~e~~~~~~~~~sesER~~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is 275 (1460)
++..+|..|...+..-.-........+...-++..+..+.+.|++.|++.|-.+.++-+...-.+...-..+..++.++.
T Consensus 287 ~~~~k~s~f~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 287 EAWDKGSRFTHSEKPQEAAPAAAVVPPKEKETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE 366 (594)
T ss_pred cccccccccccccchhhhhhccccCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466777755544111111112333444445566678889999999999998888888888777777777777777776
Q ss_pred HHhhh
Q 000499 276 HARED 280 (1460)
Q Consensus 276 ~aQ~~ 280 (1460)
.++..
T Consensus 367 ~~~~~ 371 (594)
T PF05667_consen 367 EKEAE 371 (594)
T ss_pred HHHHH
Confidence 65544
|
|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
Probab=96.36 E-value=5.3 Score=51.37 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=20.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000499 242 LKNALAKLEAEKEAGLLQYRQSLERLS 268 (1460)
Q Consensus 242 Lkk~i~~LqtEKE~~~~qY~~slek~~ 268 (1460)
|++.|-.|++|+|...-+|+.-..+++
T Consensus 2 l~e~l~qlq~Erd~ya~~lk~e~a~~q 28 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQQLKEESAQWQ 28 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999997777776655443
|
|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.75 Score=52.50 Aligned_cols=147 Identities=25% Similarity=0.336 Sum_probs=91.6
Q ss_pred HHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHH
Q 000499 323 LSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADK 402 (1460)
Q Consensus 323 Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~ 402 (1460)
|+.|-....+.....+....-..++..+...++..+..++.+.+ .++.+|+..+.+.+.+++++++
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e--------------~le~qv~~~e~ei~~~r~r~~~ 77 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELE--------------DLENQVSQLESEIQEIRERIKR 77 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444445555556666666666555554444 3455666666666666666666
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHH
Q 000499 403 AESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHS 482 (1460)
Q Consensus 403 ~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~s 482 (1460)
++..+...+.. .+..++.-.++.....+.+|+.++....+++..|..+|.....++...|......+ ..+-.
T Consensus 78 ~e~kl~~v~~~-----~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~---~~~e~ 149 (239)
T COG1579 78 AEEKLSAVKDE-----RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE---ARLEE 149 (239)
T ss_pred HHHHHhccccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 66665433332 45566777777778888888888888888888888888888888888777755543 33344
Q ss_pred HHHHHHHHh
Q 000499 483 ELESMVQKM 491 (1460)
Q Consensus 483 E~e~L~ekl 491 (1460)
+..++.+..
T Consensus 150 e~~~i~e~~ 158 (239)
T COG1579 150 EVAEIREEG 158 (239)
T ss_pred HHHHHHHHH
Confidence 444444433
|
|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.10 E-value=5.5 Score=49.09 Aligned_cols=283 Identities=20% Similarity=0.212 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhh
Q 000499 398 KVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSN 477 (1460)
Q Consensus 398 ~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~ 477 (1460)
+-+..++.+-.+|+....++..-.-+|....+.-..+|..|..++-...++++.|+.-++.+...+..
T Consensus 295 ~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~k------------ 362 (622)
T COG5185 295 QKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRK------------ 362 (622)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh------------
Confidence 33344455555555555555555556666666666777777777777777777777777777666532
Q ss_pred Hhh-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Q 000499 478 QTL-HSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKD 556 (1460)
Q Consensus 478 q~L-~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~ 556 (1460)
|+. -++-+.+++.--.++++|.-..-+++.|..++-+ +-.+|...+..|++.. -..++|+.+|-..
T Consensus 363 q~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~---~~leaq~~~~slek~~----~~~~sl~~~i~~~------ 429 (622)
T COG5185 363 QGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKS---RKLEAQGIFKSLEKTL----RQYDSLIQNITRS------ 429 (622)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHh---HHHHHHHHHHHHHHHH----HHHHHHHHHhccc------
Confidence 111 1233333333334556666666677777777665 3355556666654443 2234444444322
Q ss_pred hhhchHhHHHHHHHH--HHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHH-HHHHHHhhHHHHH
Q 000499 557 MGTRNQSLQEEVEKV--KEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQ-RNA-LQQEIYCLKEELN 632 (1460)
Q Consensus 557 le~~k~~L~eev~~l--~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~e-k~a-Lq~el~~lkee~~ 632 (1460)
+..+-..+... +--+.++++.+...--+|+.+-.|+..=-. +.++-++ |.. |+..+--++..+.
T Consensus 430 ----~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~--------~~~~~e~nksi~Lee~i~~~~~~i~ 497 (622)
T COG5185 430 ----RSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQ--------ERIKTEENKSITLEEDIKNLKHDIN 497 (622)
T ss_pred ----HHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHH--------HHHHHHhccceeHHHHhhhHHhHHH
Confidence 21111111111 011147788877665566655444332111 1112122 233 7888888888888
Q ss_pred HHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhHhh
Q 000499 633 ELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEK-LLEKNAVLENSLSDLNVEL 711 (1460)
Q Consensus 633 ~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mek-LlEkns~LE~SLSdan~EL 711 (1460)
.|+.++..+...|..+|. .|..++++-+ .|+.+---...-|++ |..=|-..-+|++++-.-+
T Consensus 498 El~~~l~~~e~~L~~a~s--------------~~~~~ke~~e---~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~v 560 (622)
T COG5185 498 ELTQILEKLELELSEANS--------------KFELSKEENE---RELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLV 560 (622)
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHhhH---HHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHH
Confidence 888888888887766643 2333333322 222222222222332 3333666677888888777
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhh
Q 000499 712 EGVRDKVKALEEVCQNLLAEKST 734 (1460)
Q Consensus 712 egLReK~K~LEesc~sL~~eKS~ 734 (1460)
...+-+.-.+--+|.-.+++..-
T Consensus 561 qs~~i~ld~~~~~~n~~r~~i~k 583 (622)
T COG5185 561 QSTEIKLDELKVDLNRKRYKIHK 583 (622)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Confidence 77777766665566555555443
|
|
| >KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.08 E-value=7.1 Score=50.18 Aligned_cols=247 Identities=19% Similarity=0.175 Sum_probs=117.1
Q ss_pred HHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcc
Q 000499 753 LKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLG 832 (1460)
Q Consensus 753 l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~ 832 (1460)
+.++-+-++.+|.|..++..++.+. +.....+..+..+|++|+..-.+.+..-.++-+-+..++.+
T Consensus 442 V~~~~k~~~e~e~s~~~~~~~i~~~--------------k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~ 507 (716)
T KOG4593|consen 442 VQKVDKHSLEMEASMEELYREITGQ--------------KKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQ 507 (716)
T ss_pred HHHHHHhhHhhhhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3344444555666655444444333 33333445666777777777777777777777766777777
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHhhh------hhhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHH
Q 000499 833 LEEEKESTLQKVEELQFSLDAEKQQHAS------FVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFI 906 (1460)
Q Consensus 833 lq~Ek~~~~~~veel~~sL~~e~q~h~~------~~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~Aqieifi 906 (1460)
..++...+-.+=..+...+...|-.+.- .++++..-. +..+.....|..+++.|.. -
T Consensus 508 ~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt-------~~~~~~~k~~~e~LqaE~~----------~ 570 (716)
T KOG4593|consen 508 YLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPT-------SKARQIKKNRLEELQAELE----------R 570 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCch-------HHHHHHHHHHHHHHHHHHH----------H
Confidence 7777666555544444444444433321 111111111 1112222222222222222 2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhH-HHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHH-Hh-----
Q 000499 907 TQKYIQDLKEKNFSLLFECQKLLQESSLS-EKLIHKLENENCE----QQEEMRSLVDQIKVLRVQLYQLLEI-LE----- 975 (1460)
Q Consensus 907 Lq~~l~Dl~~kn~~ll~EcQk~~eas~~s-e~lIseLe~E~~~----~q~e~~~L~~~~~~Lr~gi~qv~k~-L~----- 975 (1460)
|..-+.++++-|....+. ..+..+..+ .+=|.+|+.++.. -+.=.+.....|.-+|+..+.++.- +.
T Consensus 571 lk~~l~~le~~~~~~~d~--~i~~~s~~~~~~ev~qlk~ev~s~ekr~~rlk~vF~~ki~eFr~ac~sL~Gykid~~~~s 648 (716)
T KOG4593|consen 571 LKERLTALEGDKMQFRDG--EIAVHSLLAFSKEVAQLKKEVESAEKRNQRLKEVFASKIQEFRDACYSLLGYKIDFTLES 648 (716)
T ss_pred HHHHHHHHhccCCcccch--hhHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 223333333332222111 112222222 1223333333332 1122345566778888888887765 32
Q ss_pred ---hcccCCCcchhhhhhhhHHHHHHHHhHHHHHHHHHHHhHhhhHHHHH-HHHHHHHHHHHHHHHH
Q 000499 976 ---IDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVI-ENSILVALLGQLKLEA 1038 (1460)
Q Consensus 976 ---i~~~~g~~d~~~~e~~l~~~l~~i~~~i~~l~~s~~~~q~enq~~~v-EnsvL~t~L~ql~~e~ 1038 (1460)
|.+.+.++|... ++ +..=.|.+.-+.+-+..+.+.=.+.-+ .-+.+-.||.-|-+|.
T Consensus 649 ~~ritS~ya~~~~~~-~~-----~e~eS~s~~ll~n~~~~~~d~li~~~~~~~~siPaFlaaLTLEL 709 (716)
T KOG4593|consen 649 RYRLTSGYAEEPDDC-DI-----FENESGSLQLLENPYSHTFDPLIQVWCFARSSIPAFLAALTLEL 709 (716)
T ss_pred ceeeeeeccCCCchh-hh-----hcCccchhHhhcCCcccccchHhhhhhhcccCchHHHHHHHHHH
Confidence 333333333222 32 333344444455566666666555555 6666777777666553
|
|
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
Probab=96.07 E-value=2 Score=50.94 Aligned_cols=113 Identities=26% Similarity=0.262 Sum_probs=94.4
Q ss_pred hhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHH
Q 000499 737 AEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGL 816 (1460)
Q Consensus 737 sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l 816 (1460)
++...|..=|.-+.+.-..|......|=..|.++..+...||.++...+..+.....-+. ..++..|+.|++.++...
T Consensus 65 ~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~--~~ere~lV~qLEk~~~q~ 142 (319)
T PF09789_consen 65 KENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHF--PHEREDLVEQLEKLREQI 142 (319)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccccc--chHHHHHHHHHHHHHHHH
Confidence 466777777777777788888888888888888899999999998888777765543333 399999999999999999
Q ss_pred HHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhH
Q 000499 817 KDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSL 851 (1460)
Q Consensus 817 ~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL 851 (1460)
..++..|--..|--.++-.|++..-+.+..||..|
T Consensus 143 ~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 143 EQLERDLQSLLDEKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888887666
|
|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.04 E-value=9.5 Score=51.26 Aligned_cols=117 Identities=20% Similarity=0.231 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhHHHHHh----------HHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 000499 441 KLARAEEEAQRLHSELDNGFAKLKGAEEKCL----------LLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWT 510 (1460)
Q Consensus 441 els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~----------~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~ 510 (1460)
.+.-.=++|.-|..+|...+.+|.+++.-.. .|++.--...+..+.+...+ ..+.+-..+.+.-+.
T Consensus 1505 ~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~a----e~V~eaL~~Ad~Aq~ 1580 (1758)
T KOG0994|consen 1505 ELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQA----EDVVEALEEADVAQG 1580 (1758)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444567889999999999999999987321 23322222233333333333 222222223332222
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHH
Q 000499 511 CIQEERLRFVE-AETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQ 565 (1460)
Q Consensus 511 slq~E~~k~~E-aE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~ 565 (1460)
..++ .++ |.+.+..-+.+..+.|++..+-..-.....+.|.+++..-..|+
T Consensus 1581 ~a~~----ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1581 EAQD----AIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 222 22222233556666666665555555555555555555444443
|
|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=5.9 Score=48.36 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000499 315 QYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARI 361 (1460)
Q Consensus 315 qykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l 361 (1460)
++.....+|..++..+...+.+...+..++..++.++...+..+...
T Consensus 83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555555555555555555444
|
|
| >KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.97 E-value=3.6 Score=45.84 Aligned_cols=196 Identities=30% Similarity=0.374 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000499 291 AEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVV 370 (1460)
Q Consensus 291 ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~l 370 (1460)
|++++.+++..+..++.+.+.+--.|.-..+++...+.---.+.--.+.+..|+.+-+.++..+...+..-.-=.+.+--
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adr 81 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADR 81 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888988999988888888888888876666666566666677778888887777766554333211111111
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 371 KYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQ 450 (1460)
Q Consensus 371 qyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~ 450 (1460)
.|..-..+ +...+.++.+.-++++-+++.+..|...+.-+.....++... +..+++.-+
T Consensus 82 K~eEVark-------L~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~-----------ee~~~q~~d--- 140 (205)
T KOG1003|consen 82 KYEEVARK-------LVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAK-----------EEKLEQKEE--- 140 (205)
T ss_pred HHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH-----------HHHHhhhHH---
Confidence 13322222 333344444444555566666666665544443333333322 333333222
Q ss_pred HHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000499 451 RLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGR 507 (1460)
Q Consensus 451 RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~ 507 (1460)
....+|.....||+.+|.+.--.|++.+.|..+-+.+..++....-+-...+.+++.
T Consensus 141 ~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 141 KYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDE 197 (205)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 233445555669999999999999999999999999988884433333334444443
|
|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
Probab=95.92 E-value=7.7 Score=49.28 Aligned_cols=257 Identities=18% Similarity=0.271 Sum_probs=116.7
Q ss_pred HHHHHHhhhhhhhHhHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 378 MISALEDKLLHSEEDSKRINKVAD-----KAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRL 452 (1460)
Q Consensus 378 ~IS~LE~ki~~aee~~~~ln~~~e-----~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL 452 (1460)
.+..||..+..++........... .|+.-+..++..+..|+.-++.+=.-|..|...+-..=.++.. -.
T Consensus 162 a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~---gy--- 235 (560)
T PF06160_consen 162 AIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKE---GY--- 235 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHH---HH---
Confidence 455567777777777776665433 4455666666666666665555444444433322211111111 01
Q ss_pred HHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 453 HSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMG-----SQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQ 527 (1460)
Q Consensus 453 ~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~-----~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~ 527 (1460)
.++....-.|..+ .++.....++..+......+. .-...+.....+|+.|-..++.|..-+-..+..+.
T Consensus 236 -~~m~~~gy~l~~~-----~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~ 309 (560)
T PF06160_consen 236 -REMEEEGYYLEHL-----DIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLK 309 (560)
T ss_pred -HHHHHCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 1111101111110 011112222222222222221 12344566777888888888888776666666777
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHHHH--HHHhh-hchHhHHHHHHHHHHHhc----cCcccccccHHHHHHHHHHHHHHH
Q 000499 528 TLQHLHSQSQDELRSLAAELQNRAQI--LKDMG-TRNQSLQEEVEKVKEENK----GLNELNLSSAESIKNLQDEILSLR 600 (1460)
Q Consensus 528 ~Lq~LhSqSQeE~~~L~~Ei~~~~~~--L~~le-~~k~~L~eev~~l~EEn~----~L~e~n~SS~~sIk~LQdEi~~Lk 600 (1460)
.+.....+..+..+.|..|+..+.+. |++-+ .....+...+..+..... .+.....+.+ .++.+...+.
T Consensus 310 ~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS----~i~~~l~~~~ 385 (560)
T PF06160_consen 310 ELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYS----EIQEELEEIE 385 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHH----HHHHHHHHHH
Confidence 76666666666667777777766442 22111 122233333333322222 1222222222 2222333333
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCC
Q 000499 601 ETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSL 650 (1460)
Q Consensus 601 E~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~ 650 (1460)
+.+..++.+..--.+.-..|..+=..-++.+..+......+...|...|+
T Consensus 386 ~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL 435 (560)
T PF06160_consen 386 EQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL 435 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33333333222222333344444444455566666666666666665555
|
EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane |
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
Probab=95.92 E-value=2.6 Score=46.83 Aligned_cols=133 Identities=27% Similarity=0.314 Sum_probs=78.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHH
Q 000499 410 LKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQ 489 (1460)
Q Consensus 410 Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~e 489 (1460)
|-+-|..-.++...+..++...-++..+++..+.....++.++..++..+.... .+..+.|+ ..|...++.+..
T Consensus 59 Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~----~dknL~eR--eeL~~kL~~~~~ 132 (194)
T PF15619_consen 59 LPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLS----EDKNLAER--EELQRKLSQLEQ 132 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCchhH--HHHHHHHHHHHH
Confidence 334455566777777777777888888888888888888888888766543332 22222221 333444444444
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhh
Q 000499 490 KMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMG 558 (1460)
Q Consensus 490 kl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le 558 (1460)
++...+..+......++-...++.- .+..-..-++..+.++..|..||+.+.++|.+-+
T Consensus 133 ~l~~~~~ki~~Lek~leL~~k~~~r----------ql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 133 KLQEKEKKIQELEKQLELENKSFRR----------QLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4433333333333333333333322 2334455667778888899999999998887654
|
|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.89 E-value=7.7 Score=48.99 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHH
Q 000499 601 ETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEK 680 (1460)
Q Consensus 601 E~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK 680 (1460)
+.+.-...+..-...++..||..+..+...+..+....-.+..++..+ .+.+...+++ ...|.
T Consensus 425 el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~--------------~~~~~~~k~e---~eee~ 487 (581)
T KOG0995|consen 425 ELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKA--------------ESKYELKKEE---AEEEW 487 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH---HHHHH
Confidence 333333344444455666777777666666665555555554444333 2222222211 11111
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhhhhhhhhHhhhhHHHH
Q 000499 681 VALLEKLEIME-KLLEKNAVLENSLSDLNVELEGVRDK 717 (1460)
Q Consensus 681 ~~L~~kLq~me-kLlEkns~LE~SLSdan~ELegLReK 717 (1460)
.+--..+..|+ .|.-.+..+.++++++-..+...+-.
T Consensus 488 ~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~e 525 (581)
T KOG0995|consen 488 KKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELE 525 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222332 35666778888888887666655544
|
|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
Probab=95.73 E-value=6.2 Score=46.73 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=70.8
Q ss_pred HHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 379 ISALEDKLLHSEEDSKRINKVADKAESEVERLKQ-------ALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQR 451 (1460)
Q Consensus 379 IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~-------~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~R 451 (1460)
+-..+-++..++.-....+..+.........++. .|..+...--.+..++.--.+|...++.-++.|.+=+..
T Consensus 162 ~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~t 241 (309)
T PF09728_consen 162 LKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFET 241 (309)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3333444444444444555544455555566666 666666666678888888899999999999999999999
Q ss_pred HHHHHHhHHhhhhhHHHHHhHH
Q 000499 452 LHSELDNGFAKLKGAEEKCLLL 473 (1460)
Q Consensus 452 L~~Ei~~~~~kL~~lE~~~~~L 473 (1460)
.+.||+....+.+.+|..+..+
T Consensus 242 fk~Emekm~Kk~kklEKE~~~~ 263 (309)
T PF09728_consen 242 FKKEMEKMSKKIKKLEKENQTW 263 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887665
|
It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription []. |
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
Probab=95.65 E-value=6.6 Score=46.49 Aligned_cols=22 Identities=41% Similarity=0.736 Sum_probs=13.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q 000499 709 VELEGVRDKVKALEEVCQNLLA 730 (1460)
Q Consensus 709 ~ELegLReK~K~LEesc~sL~~ 730 (1460)
.+++.++.++..||..|..|..
T Consensus 286 ~~~~~~~~k~~kLe~LcRaLQ~ 307 (309)
T PF09728_consen 286 KELEKLKKKIEKLEKLCRALQA 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3466666666667777766653
|
It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription []. |
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
Probab=95.39 E-value=3.6 Score=45.86 Aligned_cols=68 Identities=26% Similarity=0.332 Sum_probs=55.6
Q ss_pred chhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHH
Q 000499 654 NFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI-----MEKLLEKNAVLENSLSDLNVELEGVRDKVKAL 721 (1460)
Q Consensus 654 ~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~-----mekLlEkns~LE~SLSdan~ELegLReK~K~L 721 (1460)
.....+++|.-++..|..-+.....|++.|..+... .+|.-.+|.+||+-|..+...||.--..+...
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ev 169 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578888999999999999999999999988876 46888899999999999998777655544433
|
|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.7 Score=46.06 Aligned_cols=55 Identities=29% Similarity=0.342 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHh
Q 000499 430 QCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKM 491 (1460)
Q Consensus 430 q~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl 491 (1460)
++..+|..||.++-.+..-+ .....+|..+......+|+..+.|..+......++
T Consensus 77 ~l~rriq~LEeele~ae~~L-------~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ 131 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKL-------KETTEKLREADVKAEHFERKVKALEQERDQWEEKY 131 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence 44445555555554444433 33455566666666666666666666777776666
|
In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis []. |
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
Probab=95.26 E-value=3.6 Score=53.50 Aligned_cols=234 Identities=22% Similarity=0.248 Sum_probs=122.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHH
Q 000499 408 ERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487 (1460)
Q Consensus 408 ~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L 487 (1460)
..|..+|.+|+.+..++...=+++...|..+.+--.....++..|+.+.+.+..|+..+. .+.+.=+.-++.+
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~-------~aRq~DKq~l~~L 493 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV-------QARQQDKQSLQQL 493 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 356666666666677766666677777777776555666666666666665555555543 2233323333333
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH------hhh-ccHHHHHHHHHHHHHHHHHHHHhhh
Q 000499 488 VQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAE-TAFQTLQH------LHS-QSQDELRSLAAELQNRAQILKDMGT 559 (1460)
Q Consensus 488 ~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE-~aL~~Lq~------LhS-qSQeE~~~L~~Ei~~~~~~L~~le~ 559 (1460)
..+ |.+.+.-=..+...+.+|+....++| ++-..+.. -.+ ......+-|-.|+.++...|+.-+.
T Consensus 494 Ekr-------L~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee 566 (697)
T PF09726_consen 494 EKR-------LAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEE 566 (697)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 33333334455566666654444433 33322100 011 1233445566666666666666666
Q ss_pred chHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhhhHHHHHHHHH
Q 000499 560 RNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLE--------------AEVELRVDQRNALQQEIY 625 (1460)
Q Consensus 560 ~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe--------------~Ev~~~~~ek~aLq~el~ 625 (1460)
....++.+++.+..-. .| +..-+..|...+..+++....|| .-+|--..+-+.++..+.
T Consensus 567 ~~~~~e~~~~~lr~~~---~e----~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~ 639 (697)
T PF09726_consen 567 QIRELESELQELRKYE---KE----SEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLR 639 (697)
T ss_pred HHHHHHHHHHHHHHHH---hh----hhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666664432211 11 00112333333333433333333 223333566677777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh----cCCCccchhhhHHHH
Q 000499 626 CLKEELNELNKKHQAMVEQVES----VSLNPENFGLSVKEL 662 (1460)
Q Consensus 626 ~lkee~~~Ln~k~~~l~e~l~~----l~~~~e~~~~~VkeL 662 (1460)
....||.+|..|...++.=|-+ .++.|-+-+.+++=|
T Consensus 640 ~~d~ei~~lk~ki~~~~av~p~~~~~~~~~~~~~~~~~~~~ 680 (697)
T PF09726_consen 640 KKDKEIEELKAKIAQLLAVMPSDSYCSAITPPTPHYSSKFL 680 (697)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccccCCCCCCccchhhhc
Confidence 7888888888877666655544 234555555555433
|
; GO: 0016021 integral to membrane |
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.25 E-value=2.5 Score=48.45 Aligned_cols=61 Identities=23% Similarity=0.378 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 000499 295 VQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLK 355 (1460)
Q Consensus 295 ~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LK 355 (1460)
+..-..++.++++++++..-.|--=...+-++++++++-+.+...+++|.++++.+..+-+
T Consensus 26 ~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~ 86 (239)
T COG1579 26 IKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK 86 (239)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3344455555566666665555555566777888888888888888888888887775544
|
|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
Probab=95.25 E-value=2.2 Score=45.22 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000499 304 RLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEA 363 (1460)
Q Consensus 304 ~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~ 363 (1460)
.|..|++.+.-.+..|..++-.|+........++..++.+...++.++..+...+.....
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778777777777777777777777777777777777777777776666666543
|
In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis []. |
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
Probab=95.13 E-value=4.4 Score=52.75 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=33.0
Q ss_pred HHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 474 ERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQT 528 (1460)
Q Consensus 474 E~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~ 528 (1460)
-.+++.++-+.+.|.-|+..+.+....-..-+..|..-+.+|+..+..+|..|..
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~e 513 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQE 513 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666665555555555555666666666666666666666655
|
; GO: 0016021 integral to membrane |
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=95.09 E-value=6.6 Score=52.62 Aligned_cols=126 Identities=27% Similarity=0.305 Sum_probs=77.7
Q ss_pred hhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhh---------------hhHHHHHH
Q 000499 655 FGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVEL---------------EGVRDKVK 719 (1460)
Q Consensus 655 ~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~EL---------------egLReK~K 719 (1460)
+..-+..|.++|..||.....++.+=....+-=.-+-+|-.+.++|+.||.++...+ |.+-+|+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVE 303 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHH
Confidence 344555677788888887777665432222211113345556888888888776654 44555555
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHH------HHHHHHHHHHHHHHHHh
Q 000499 720 ALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEV------EGLRAKSKSLEDSCLLL 791 (1460)
Q Consensus 720 ~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~El------E~lr~K~k~lEes~~~l 791 (1460)
.|+... ++-+.+.|+++++.|-. ++|..|...||.||-.+|+.. +-++.|+|-+++.++.-
T Consensus 304 ~~~~~~-----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (977)
T PLN02939 304 NLQDLL-----DRATNQVEKAALVLDQN------QDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQAS 370 (977)
T ss_pred HHHHHH-----HHHHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 554332 34566788888886544 467777778888888887754 44556666666665544
|
|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.087 Score=57.60 Aligned_cols=117 Identities=27% Similarity=0.330 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000499 716 DKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEK 795 (1460)
Q Consensus 716 eK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~ 795 (1460)
..+.+++..+-.+..|...+.-.|+-+..+|-.++..++.+..+.+.....+..+..++..++.+++++++.+......+
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcc
Q 000499 796 SCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLG 832 (1460)
Q Consensus 796 s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~ 832 (1460)
..+.+|...|--|+..+.+++..+++++.+|.+|...
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888754
|
In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B. |
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Probab=94.88 E-value=13 Score=45.25 Aligned_cols=180 Identities=15% Similarity=0.212 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000499 342 DRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEK 421 (1460)
Q Consensus 342 eRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eek 421 (1460)
..-..++.|-+.-.+|+.+...|++.+. +....+-....+|+.+..++..+.-++...+..|-....+++..+
T Consensus 95 ~~k~~~e~er~~~~~El~~~r~e~~~v~-------~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~ 167 (499)
T COG4372 95 GEKRAAETEREAARSELQKARQEREAVR-------QELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQA 167 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334466667777777777777777664 233444555667888888888888888999988888888999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHH
Q 000499 422 EALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEK 501 (1460)
Q Consensus 422 eal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK 501 (1460)
+++..+..++-.....|.......-....+...+-..+..+ -+..+.++.+.+....-.+...++++..+..+.++
T Consensus 168 qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r----~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~ 243 (499)
T COG4372 168 QSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATR----ANAAQARTEELARRAAAAQQTAQAIQQRDAQISQK 243 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777766665444433333332222222222222222222 22333456667777777777888887778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000499 502 QKELGRLWTCIQEERLRFVEAETAFQTLQHL 532 (1460)
Q Consensus 502 ~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~L 532 (1460)
-.+|..--..|.+-..+.-..|++...++..
T Consensus 244 ~q~iaar~e~I~~re~~lq~lEt~q~~leqe 274 (499)
T COG4372 244 AQQIAARAEQIRERERQLQRLETAQARLEQE 274 (499)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877777777666666666666665433
|
|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=94.82 E-value=5.7 Score=53.21 Aligned_cols=143 Identities=33% Similarity=0.367 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000499 563 SLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMV 642 (1460)
Q Consensus 563 ~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~ 642 (1460)
.|-.++..+++||-.|.. .|.-|..+++..+++-+.+ -.|..+-+-+...+..|..+.-.--
T Consensus 223 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (977)
T PLN02939 223 SLSKELDVLKEENMLLKD-------DIQFLKAELIEVAETEERV-----------FKLEKERSLLDASLRELESKFIVAQ 284 (977)
T ss_pred cHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHhhhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455555555555544433 3555555666555544432 2355556666677777777775444
Q ss_pred HHHhhc-CCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh------hhhHH
Q 000499 643 EQVESV-SLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVE------LEGVR 715 (1460)
Q Consensus 643 e~l~~l-~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~E------LegLR 715 (1460)
+.++.+ .+..+|.-.+|..||.-. .|.+..+|+++++ |+.=+.|-.|-.-||.||-.+|+. ++-++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (977)
T PLN02939 285 EDVSKLSPLQYDCWWEKVENLQDLL-----DRATNQVEKAALV--LDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQ 357 (977)
T ss_pred hhhhhccchhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHH
Confidence 444433 334467788888777643 5677788888886 555556666777788888887764 45555
Q ss_pred HHHHHHHHHHHHHHH
Q 000499 716 DKVKALEEVCQNLLA 730 (1460)
Q Consensus 716 eK~K~LEesc~sL~~ 730 (1460)
.|+|-+|+..+--..
T Consensus 358 ~~~~~~~~~~~~~~~ 372 (977)
T PLN02939 358 QKLKLLEERLQASDH 372 (977)
T ss_pred HHHHHHHHHHHhhHH
Confidence 666666655544433
|
|
| >KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] | Back alignment and domain information |
|---|
Probab=94.79 E-value=17 Score=46.42 Aligned_cols=167 Identities=19% Similarity=0.164 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000499 290 IAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELS-DRASKAEIEAQTLKLDLARIEAEKEAA 368 (1460)
Q Consensus 290 ~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~ln-eRa~~AE~E~~~LKqel~~l~~EKEa~ 368 (1460)
.+..|.+-|+.++..++ ..+.-|+-=.-+|.+|+..+ +.++ .+-..+++.+......+++-..++++.
T Consensus 118 ~~~~e~~~lk~~lee~~----~el~~~k~qq~~v~~l~e~l-------~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~ 186 (629)
T KOG0963|consen 118 KASEENEELKEELEEVN----NELADLKTQQVTVRNLKERL-------RKLEQLLEIFIENAANETEEKLEQEWAEREAG 186 (629)
T ss_pred hhhhhHHHHHHHHHHHH----HHHhhhhhhHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666664332 22222333333344443333 2222 233445555556666777777777777
Q ss_pred HHHHHHHH-HHHHHHHhhhhhhhHhHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 369 VVKYEECS-RMISALEDKLLHSEEDSKRINKVADKAES----EVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLA 443 (1460)
Q Consensus 369 ~lqyqQcL-E~IS~LE~ki~~aee~~~~ln~~~e~~e~----ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els 443 (1460)
+.--++.+ +++..++.+|+.++......-.++-.+++ ++-.....|.-+-.+.+..+-++-.+...+..|.+.+.
T Consensus 187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~ 266 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA 266 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555544 56667777766665433322222122222 23333333444444444444444444444544544444
Q ss_pred HHHHHHHHHH--HHHHhHHhhhhhHHH
Q 000499 444 RAEEEAQRLH--SELDNGFAKLKGAEE 468 (1460)
Q Consensus 444 ~sQEEv~RL~--~Ei~~~~~kL~~lE~ 468 (1460)
.+.... ++. .+|+.....|...+.
T Consensus 267 ~~N~~~-~~~~~~~i~~~~~~L~~kd~ 292 (629)
T KOG0963|consen 267 KANSSK-KLAKIDDIDALGSVLNQKDS 292 (629)
T ss_pred hhhhhh-hhccCCchHHHHHHHhHHHH
Confidence 433332 222 344444444444333
|
|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=26 Score=48.10 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=21.2
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000499 329 NISRAEADAVELSDRASKAEIEAQTLKLDLARIEA 363 (1460)
Q Consensus 329 ~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~ 363 (1460)
++....+++..+..++..|-.++....+++..+..
T Consensus 74 qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 74 KIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 34445555666666666666666666666666554
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=94.63 E-value=25 Score=49.38 Aligned_cols=86 Identities=17% Similarity=0.248 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHH
Q 000499 265 ERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLET--EREANIRQYQQCLDKLSNMEKNISRAEADAVELSD 342 (1460)
Q Consensus 265 ek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~--Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lne 342 (1460)
.||.+|+..|......+..++++.......+..|.+....+=. ....++.....+...+..-...+..+.+.+.....
T Consensus 742 ~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~ 821 (1353)
T TIGR02680 742 RRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAA 821 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544444333333333333333333332222211 12333444444444444444444444444444444
Q ss_pred HHHHHHHH
Q 000499 343 RASKAEIE 350 (1460)
Q Consensus 343 Ra~~AE~E 350 (1460)
++..++..
T Consensus 822 ~~~~a~~~ 829 (1353)
T TIGR02680 822 AWKQARRE 829 (1353)
T ss_pred HHHHHHHH
Confidence 43333333
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.59 E-value=21 Score=46.54 Aligned_cols=111 Identities=22% Similarity=0.279 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHhhhh
Q 000499 626 CLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKL-LEKNAVLENSL 704 (1460)
Q Consensus 626 ~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekL-lEkns~LE~SL 704 (1460)
-.|.+++.+++....++- .+..||.....+++..-.+.-||..|-.+|..|+-- .+.+
T Consensus 469 t~kt~ie~~~~q~e~~is--------------ei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~------- 527 (1118)
T KOG1029|consen 469 TQKTEIEEVTKQRELMIS--------------EIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETT------- 527 (1118)
T ss_pred hHHHHHHHhhhHHHHHHH--------------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcc-------
Confidence 345555555555544444 344444444445555555667777777777776532 2221
Q ss_pred hhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhh
Q 000499 705 SDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENN 761 (1460)
Q Consensus 705 Sdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns 761 (1460)
.-...|......=|..|+.+++..-.|-.|...=++++++..-.|+.|-+-++
T Consensus 528 ----~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~ 580 (1118)
T KOG1029|consen 528 ----QRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVN 580 (1118)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11222333334447789999999999999999999999988777777755443
|
|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
Probab=94.56 E-value=13 Score=44.11 Aligned_cols=173 Identities=25% Similarity=0.332 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 240 LTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIA-EAEVQTLKEALARLETEREANIRQYQQ 318 (1460)
Q Consensus 240 ~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~a-e~E~~sLk~~la~Lq~Ekea~Llqykq 318 (1460)
+.|+..|..|+.+....+..-...-.|...|..++.......-.++..|... +-=..+|...|..|+.+++.-...|.+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~ 102 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQ 102 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444433344444455444444333322222222211 112567788888888889888888888
Q ss_pred HHHHHH-hHHHHHhHhHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----HHHHHHhhhhhhhH
Q 000499 319 CLDKLS-NMEKNISRAEADAVELSDRAS-KAEIEAQTLKLDLARIEAEKEAAVVKYEECSR-----MISALEDKLLHSEE 391 (1460)
Q Consensus 319 ClE~Is-~LE~~~s~aqeeak~lneRa~-~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE-----~IS~LE~ki~~aee 391 (1460)
=.|.+. .|..++.+.+.+=..+-.... +-+.-|..|+..|.++..++.+ |+.+|+ +|+ ||+.+-.-|
T Consensus 103 EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~----~q~~le~Lr~EKVd-lEn~LE~EQ- 176 (310)
T PF09755_consen 103 EEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSA----KQEELERLRREKVD-LENTLEQEQ- 176 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHh-HHHHHHHHH-
Confidence 777775 466666665554443322221 1233345566666666544422 334442 222 333322222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000499 392 DSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQ 430 (1460)
Q Consensus 392 ~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq 430 (1460)
+.=|..|.+.+.+|..++..++.++++
T Consensus 177 ------------E~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 177 ------------EALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333456777788888888888888774
|
|
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.49 E-value=19 Score=45.48 Aligned_cols=398 Identities=22% Similarity=0.251 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHH-----
Q 000499 347 AEIEAQTLKLDLARIEAEKEAAVVKYEECSR-MISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEE----- 420 (1460)
Q Consensus 347 AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE-~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~ee----- 420 (1460)
|+.+++-|++++.+|..|-+-+.--..|.-+ =++-|+.+ ..++.....+....+.++.+++.++..+++-...
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK-~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~ 84 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEK-EDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVA 84 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667777777777777655543221111110 11112222 1112222233334555566666666665533221
Q ss_pred -----HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHH
Q 000499 421 -----KEA-----LALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQK 490 (1460)
Q Consensus 421 -----kea-----l~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ek 490 (1460)
.+. ....-.-.+.+|..|+.++.+...++-+-+.|.+.......++=.....+|..--.|+.|+....-+
T Consensus 85 ~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfR 164 (772)
T KOG0999|consen 85 RDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFR 164 (772)
T ss_pred ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Confidence 111 2222234577788888888888877777777766666665555555555555555555555444333
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHH
Q 000499 491 MGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEK 570 (1460)
Q Consensus 491 l~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~ 570 (1460)
-+-.- .---|++.=++++|+.+.. ..++|=|--+|..||..+.....-|+ +.+
T Consensus 165 E~Rll----seYSELEEENIsLQKqVs~--------------LR~sQVEyEglkheikRleEe~elln---~q~------ 217 (772)
T KOG0999|consen 165 EARLL----SEYSELEEENISLQKQVSN--------------LRQSQVEYEGLKHEIKRLEEETELLN---SQL------ 217 (772)
T ss_pred HHHHH----HHHHHHHHhcchHHHHHHH--------------HhhhhhhhhHHHHHHHHHHHHHHHHH---HHH------
Confidence 31111 1112222223333332111 11333333344444433333222221 111
Q ss_pred HHHHhccCcccccccHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhhHHHHHHHHHhh--HHHHHHHHHHHHH
Q 000499 571 VKEENKGLNELNLSSAESIKNLQDEILSLRETIG--------KLEAEVELRVDQRNALQQEIYCL--KEELNELNKKHQA 640 (1460)
Q Consensus 571 l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~--------kLe~Ev~~~~~ek~aLq~el~~l--kee~~~Ln~k~~~ 640 (1460)
++...||++-+ -+++ ..++|++|..++.+- .++|..+|.-+.+
T Consensus 218 -----------------------ee~~~Lk~IAekQlEEALeTlq~----EReqk~alkkEL~q~~n~e~~~~~n~l~~s 270 (772)
T KOG0999|consen 218 -----------------------EEAIRLKEIAEKQLEEALETLQQ----EREQKNALKKELSQYRNAEDISSLNHLLFS 270 (772)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHhcchhhhhhhhhhhee
Confidence 22222332222 2222 345778888777443 3555555554444
Q ss_pred HHHHHhhcCCCccc-------------------hhhh-----HHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000499 641 MVEQVESVSLNPEN-------------------FGLS-----VKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEK 696 (1460)
Q Consensus 641 l~e~l~~l~~~~e~-------------------~~~~-----VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEk 696 (1460)
+......=|..|.. +... +.....+.++|+........||+-|+-.|++-++-++.
T Consensus 271 ldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~sel~iseiqkLkqqL~smErek~~l~anL~dtqt~le~ 350 (772)
T KOG0999|consen 271 LDGKFGEDGAEPNNDPEEEHGALKKLASDLFTELQGPVSDLFSELNISEIQKLKQQLMSMEREKAELLANLQDTQTQLEH 350 (772)
T ss_pred cccccccccCCCCCChhhhcchhhhccchhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcc
Confidence 44322222222211 1222 23344557888888888888999999999888887776
Q ss_pred HHHHhhhhhhhhHhhhhHHHHHHHHHHHHHH--HHHhhhhhhhhHHHHH-hhhhHHHHHHHhhhhhhhhhhhhhhhhHHH
Q 000499 697 NAVLENSLSDLNVELEGVRDKVKALEEVCQN--LLAEKSTLVAEKNSLF-SQLQDVNENLKKLSDENNFLVNSLFDANAE 773 (1460)
Q Consensus 697 ns~LE~SLSdan~ELegLReK~K~LEesc~s--L~~eKS~L~sEK~~Lv-SQLq~~~~~l~~L~Ekns~LE~slSd~n~E 773 (1460)
- +.+|.....-++-|-+++.++=-.-.+ .++++--=--+++-+. -+|... -.+...|.-+..|
T Consensus 351 T---~~~l~~~~er~~~l~e~v~al~rlq~~~d~kgEk~rdg~~kad~~e~~l~a~-----------e~~a~k~~~a~~e 416 (772)
T KOG0999|consen 351 T---EGDLMEQRERVDRLTEHVQALRRLQDSKDKKGEKGRDGGEKADLYEVDLNAL-----------EILACKYAVAVDE 416 (772)
T ss_pred c---hhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhccccccccccchhHHhhhhhH-----------HHHHHHHHHHHHH
Confidence 5 777777777777777776665332222 2223222112222221 112221 1456777778888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHH
Q 000499 774 VEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEK 821 (1460)
Q Consensus 774 lE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek 821 (1460)
+-.++..++.|-.. .++..++....+.+-.+..++..+++
T Consensus 417 ~i~lk~ql~~l~~~--------~n~tde~~~~e~evq~l~~kl~llek 456 (772)
T KOG0999|consen 417 MIQLKDQLKALYHQ--------LNYTDEKVQYEKEVQELVEKLRLLEK 456 (772)
T ss_pred HHHHHHHHHHHHHh--------hcccchhhhHHHHHHHHHHHHHHHHH
Confidence 88888888877543 34445555555555555555555544
|
|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
Probab=94.49 E-value=5.3 Score=47.27 Aligned_cols=166 Identities=26% Similarity=0.356 Sum_probs=110.9
Q ss_pred HHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHh-------hhhhhhhH-----------------hhhhH
Q 000499 660 KELQDENSKLKEVYERDRCEKVALLEKLEIME-KLLEKNAVLE-------NSLSDLNV-----------------ELEGV 714 (1460)
Q Consensus 660 keLQ~~n~~LkE~~s~~~~EK~~L~~kLq~me-kLlEkns~LE-------~SLSdan~-----------------ELegL 714 (1460)
+.|-..|..|.+..+.....=.+-.+++..+. .|.-|..+|- -|..+.+. -++.|
T Consensus 86 qsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~L 165 (306)
T PF04849_consen 86 QSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEAL 165 (306)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHH
Confidence 55555666666655555544444444444432 3444444432 23322222 37999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHH-----------HHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 000499 715 RDKVKALEEVCQNLLAEKSTLVAEKNS-----------LFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKS 783 (1460)
Q Consensus 715 ReK~K~LEesc~sL~~eKS~L~sEK~~-----------LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~ 783 (1460)
+.|+|.||+==..|+.+-+.|..|-+. -|.||-.....+..|.+..+.=-.-+...+.|+-+|..++-+
T Consensus 166 q~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqivd 245 (306)
T PF04849_consen 166 QEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVD 245 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988866332 357888888889999998888888889999999999999999
Q ss_pred HHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcc
Q 000499 784 LEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLG 832 (1460)
Q Consensus 784 lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~ 832 (1460)
++-.|+.+-.++-.|. .+|...++.=..|..+..++.+||..
T Consensus 246 lQ~r~k~~~~EnEeL~-------q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 246 LQQRCKQLAAENEELQ-------QHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998866655554 44444444444444444444444443
|
HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 []. |
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
Probab=94.40 E-value=15 Score=43.96 Aligned_cols=198 Identities=21% Similarity=0.280 Sum_probs=130.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHhhhccHHHHHHHHHHH
Q 000499 489 QKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAF---------------------QTLQHLHSQSQDELRSLAAEL 547 (1460)
Q Consensus 489 ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL---------------------~~Lq~LhSqSQeE~~~L~~Ei 547 (1460)
+-+....++|+.=+.|-+.++.+.+.-..++-...... ..|..+-+++.+..+.|..|+
T Consensus 9 eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev 88 (319)
T PF09789_consen 9 EALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEV 88 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666665554333333333322 334456678889999999999
Q ss_pred HHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 000499 548 QNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCL 627 (1460)
Q Consensus 548 ~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~l 627 (1460)
..+.++|.++.-...-|...+.+..-.-.+....++.. -=.+|=..+.++++.+.-|+.++.--+|||+.+-.+--..
T Consensus 89 ~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~--ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~y 166 (319)
T PF09789_consen 89 EELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPH--EREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAY 166 (319)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777777777766544444554444442 1234445567888888888888888888888887777666
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000499 628 KEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLE 695 (1460)
Q Consensus 628 kee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlE 695 (1460)
+.-..-||.....+. |-++-.+- -|-.|-.+|--|++.......|+..+...+----.+++
T Consensus 167 k~K~~RLN~ELn~~L------~g~~~riv-DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 167 KCKAHRLNHELNYIL------NGDENRIV-DIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHh------CCCCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666766654443 22222222 57778888888888888888888888766665555555
|
|
| >PF14915 CCDC144C: CCDC144C protein coiled-coil region | Back alignment and domain information |
|---|
Probab=94.39 E-value=14 Score=43.66 Aligned_cols=109 Identities=19% Similarity=0.137 Sum_probs=50.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhHHhhhhhHHHHHhHHHHhhHhh
Q 000499 412 QALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSE-----------LDNGFAKLKGAEEKCLLLERSNQTL 480 (1460)
Q Consensus 412 ~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~E-----------i~~~~~kL~~lE~~~~~LE~~~q~L 480 (1460)
.+|.....-..++.-..+++...=.++|..+-.+..+--+|+.- .+-+.++|..+|..+..|+...+..
T Consensus 91 tEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~t 170 (305)
T PF14915_consen 91 TEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHT 170 (305)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445555666667777777777777777654444432 2334444445555444444333333
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 481 HSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFV 520 (1460)
Q Consensus 481 ~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~ 520 (1460)
..-+..-.=-+-...+.|.+-+..+..+..+.+.+..++.
T Consensus 171 rdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~ 210 (305)
T PF14915_consen 171 RDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVN 210 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2222111111112233444444444444444444433333
|
|
| >KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.26 E-value=11 Score=42.09 Aligned_cols=62 Identities=21% Similarity=0.306 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHH
Q 000499 234 KAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEV 295 (1460)
Q Consensus 234 kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~ 295 (1460)
.|+++|.+|...|..|+-|-|-+---|.-...++-+.+..-...---.+.+..|+.+.+..+
T Consensus 1 ~ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~ 62 (205)
T KOG1003|consen 1 KAEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKM 62 (205)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHH
Confidence 37889999999999999988888888888888888776655433322233334443333333
|
|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
Probab=94.13 E-value=5.8 Score=42.30 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 418 TEEKEALALQYQQCLEAISILEHKLAR 444 (1460)
Q Consensus 418 ~eekeal~l~~qq~~~kI~~LE~els~ 444 (1460)
.+..+.+..+.....+-|.+|+.+++.
T Consensus 37 q~~~e~~~~daEn~k~eie~L~~el~~ 63 (140)
T PF10473_consen 37 QENKECLILDAENSKAEIETLEEELEE 63 (140)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
|
There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding |
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
Probab=94.11 E-value=6.1 Score=44.02 Aligned_cols=110 Identities=25% Similarity=0.310 Sum_probs=69.0
Q ss_pred HHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000499 566 EEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVE-LRVDQRNALQQEIYCLKEELNELNKKHQAMVEQ 644 (1460)
Q Consensus 566 eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~-~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~ 644 (1460)
++|+-+++..+...+.+-.....+++...++.+++..+.+|+.=+. .+..|++.|+..+..+...+..-+++.+.|..+
T Consensus 68 eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 68 EEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444555555677777777777777776665444 467899999999999999999999999999988
Q ss_pred HhhcCCCc----cchhhhHHHHHHHhhhhHHHHHH
Q 000499 645 VESVSLNP----ENFGLSVKELQDENSKLKEVYER 675 (1460)
Q Consensus 645 l~~l~~~~----e~~~~~VkeLQ~~n~~LkE~~s~ 675 (1460)
+...+-+. ..-..++.+++.++..|..+|..
T Consensus 148 leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~ 182 (194)
T PF15619_consen 148 LELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQR 182 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76553211 11134444444444444444443
|
|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
Probab=93.97 E-value=5.3 Score=44.60 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=72.4
Q ss_pred HHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 000499 661 ELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKN 740 (1460)
Q Consensus 661 eLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~ 740 (1460)
++..+|..|.+-......|..-|..+|..-++- ..+|..+..-+..+...++.|+--...|...-..+..||+
T Consensus 52 ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd-------K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erd 124 (201)
T PF13851_consen 52 EISQENKRLSEPLKKAEEEVEELRKQLKNYEKD-------KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERD 124 (201)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433221 1233455555555555555555566666666666677777
Q ss_pred HHHhhhhHHHH-HHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 000499 741 SLFSQLQDVNE-NLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSC 788 (1460)
Q Consensus 741 ~LvSQLq~~~~-~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~ 788 (1460)
.|-...+.+-. --++..-||..||.++..+...+|..-.++.+.-..+
T Consensus 125 eL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~ 173 (201)
T PF13851_consen 125 ELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAA 173 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77766655433 3457788999999999999999998888776654433
|
|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=93.47 E-value=6.7 Score=40.84 Aligned_cols=130 Identities=25% Similarity=0.327 Sum_probs=73.6
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHH
Q 000499 327 EKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESE 406 (1460)
Q Consensus 327 E~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~e 406 (1460)
..+++..+.++..+..++..+...+..++.++.....--..+--.|..=+.+++..-..|.. ++.+
T Consensus 2 ~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~--------------lr~e 67 (132)
T PF07926_consen 2 ESELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQ--------------LREE 67 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------------HHHH
Confidence 34556666677777777778888888888888777666666655577766666655444333 3444
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHH
Q 000499 407 VERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELES 486 (1460)
Q Consensus 407 v~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~ 486 (1460)
+..++..+..++...++....+...... -.++-..|..+|.....++.+ |...|.-||..++.
T Consensus 68 ~~~~~~~~~~l~~~~~~a~~~l~~~e~s----------w~~qk~~le~e~~~~~~r~~d-------L~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 68 LQELQQEINELKAEAESAKAELEESEAS----------WEEQKEQLEKELSELEQRIED-------LNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Confidence 4444555555555555544444333222 233334455554444444444 44456666666554
Q ss_pred H
Q 000499 487 M 487 (1460)
Q Consensus 487 L 487 (1460)
+
T Consensus 131 l 131 (132)
T PF07926_consen 131 L 131 (132)
T ss_pred c
Confidence 3
|
These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore |
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
Probab=93.18 E-value=20 Score=42.69 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 588 SIKNLQDEILSLRETIGKLEAEVE 611 (1460)
Q Consensus 588 sIk~LQdEi~~LkE~~~kLe~Ev~ 611 (1460)
+|+.|..=|+.-|.+...++.++.
T Consensus 76 ~c~EL~~~I~egr~~~~~~E~~~~ 99 (325)
T PF08317_consen 76 SCRELKKYISEGRQIFEEIEEETY 99 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666666666665555444
|
|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.1 Score=49.28 Aligned_cols=95 Identities=24% Similarity=0.292 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhH
Q 000499 402 KAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLH 481 (1460)
Q Consensus 402 ~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~ 481 (1460)
.+..++..++..+.........+......+..+|..++..+...+.-+..++.|+..++--++-+|.+ +..|+
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k-------~~~l~ 171 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEK-------LRKLE 171 (194)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 33444555555555555555666666666667777777777777777777777777777666666655 56667
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 000499 482 SELESMVQKMGSQSQELTEKQKELGRLW 509 (1460)
Q Consensus 482 sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq 509 (1460)
.|+..|++++ +..|..|.+.++
T Consensus 172 ~En~~Lv~Rw------m~~k~~eAe~mN 193 (194)
T PF08614_consen 172 EENRELVERW------MQRKAQEAERMN 193 (194)
T ss_dssp HHHHHHHHHH------HHHHHHHHHH--
T ss_pred HHHHHHHHHH------HHHHHHHHHHhc
Confidence 7777888877 666666766654
|
In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B. |
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.02 E-value=24 Score=41.83 Aligned_cols=218 Identities=22% Similarity=0.299 Sum_probs=135.9
Q ss_pred HHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHH
Q 000499 609 EVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLE 688 (1460)
Q Consensus 609 Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq 688 (1460)
..+.+.+-++.|..++..+.+..+.||.+..-|.+.+ +.+...-..+-+.+..++.++.-+.++++
T Consensus 21 ~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~--------------~elr~~rdeineev~elK~kR~ein~kl~ 86 (294)
T COG1340 21 EIEELKEKRDELRKEASELAEKRDELNAKVRELREKA--------------QELREERDEINEEVQELKEKRDEINAKLQ 86 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444677789999999999999999999998888744 44455555666666666777777777776
Q ss_pred H----HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhh
Q 000499 689 I----MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLV 764 (1460)
Q Consensus 689 ~----mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE 764 (1460)
. ..++.++.... +..-..++.++..+..||-..+- ..-+..-|+ .+|..+..+.+.+.+.. +-...-
T Consensus 87 eL~~~~~~l~e~~~~~----~~~~~~~~~ler~i~~Le~~~~T---~~L~~e~E~-~lvq~I~~L~k~le~~~-k~~e~~ 157 (294)
T COG1340 87 ELRKEYRELKEKRNEF----NLGGRSIKSLEREIERLEKKQQT---SVLTPEEER-ELVQKIKELRKELEDAK-KALEEN 157 (294)
T ss_pred HHHHHHHHHHHHhhhh----hccCCCHHHHHHHHHHHHHHHHh---cCCChHHHH-HHHHHHHHHHHHHHHHH-HHHHHH
Confidence 6 23344443211 01223344455455555544432 111222222 23444444433333321 111222
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q 000499 765 NSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKV 844 (1460)
Q Consensus 765 ~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~v 844 (1460)
.++-.+.++...++.+..++..-...+-++-..+-.++..+++-.+-+.....-+-.+|.+...+.-.+..++.....++
T Consensus 158 ~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~el 237 (294)
T COG1340 158 EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNEL 237 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455567888888888888888888888888888888888888888888888888788777777777777765555555
Q ss_pred HHHHH
Q 000499 845 EELQF 849 (1460)
Q Consensus 845 eel~~ 849 (1460)
.+++.
T Consensus 238 re~~k 242 (294)
T COG1340 238 RELEK 242 (294)
T ss_pred HHHHH
Confidence 54443
|
|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
Probab=92.94 E-value=35 Score=43.56 Aligned_cols=388 Identities=19% Similarity=0.269 Sum_probs=183.7
Q ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000499 377 RMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSE- 455 (1460)
Q Consensus 377 E~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~E- 455 (1460)
..+..++..+..|++.+.+.+-. ++...+..+.+.+...++..+.+...++.+...=..--.++.+..+..+.++..
T Consensus 75 ~~~~~ie~~L~~ae~~~~~~rf~--ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~l 152 (560)
T PF06160_consen 75 KQLPEIEEQLFEAEEYADKYRFK--KAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKEL 152 (560)
T ss_pred HhhHHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888777766542 344444444444444444444444444333322222222222222222222222
Q ss_pred ----------HHhHHhhhhhHHHHHhHHHHh-hHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 456 ----------LDNGFAKLKGAEEKCLLLERS-NQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAET 524 (1460)
Q Consensus 456 ----------i~~~~~kL~~lE~~~~~LE~~-~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~ 524 (1460)
++....+|.++|..+...+.- ..+=+.++..+...+......|++....|=.|-.-++.
T Consensus 153 l~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~---------- 222 (560)
T PF06160_consen 153 LAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQK---------- 222 (560)
T ss_pred HHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----------
Confidence 233344444555444433221 12234455555555544444455444444444443333
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH---------hhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHH
Q 000499 525 AFQTLQHLHSQSQDELRSLAAELQNRAQILKD---------MGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDE 595 (1460)
Q Consensus 525 aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~---------le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdE 595 (1460)
++-.--.++..+...+.. +...-..+.+.+......+..|+--.... .+..++++
T Consensus 223 --------------~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~--~~~~i~~~ 286 (560)
T PF06160_consen 223 --------------EFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEE--ENEEIEER 286 (560)
T ss_pred --------------HhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHH
Confidence 222222223333222222 11112222233333333333332222222 56667777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCc---cchhhhHHHHHHHhhhhHHH
Q 000499 596 ILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNP---ENFGLSVKELQDENSKLKEV 672 (1460)
Q Consensus 596 i~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~---e~~~~~VkeLQ~~n~~LkE~ 672 (1460)
|..|-+..++ .++=|....+....+..-+..+...+..+..++..++-+- +.--..++.++.....|...
T Consensus 287 Id~lYd~le~-------E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~ 359 (560)
T PF06160_consen 287 IDQLYDILEK-------EVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKR 359 (560)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 7777665544 3445556666666666666666666666666666653221 11223444444444433333
Q ss_pred HHHh---HHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhh--hhHHHHHhhh
Q 000499 673 YERD---RCEKVALLEKLEI-MEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLV--AEKNSLFSQL 746 (1460)
Q Consensus 673 ~s~~---~~EK~~L~~kLq~-mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~--sEK~~LvSQL 746 (1460)
.... -.++..-.+.++. ++.+.+...-+++...+.+..|.+||..=+.--+.-.-++...++.. =+|..|=.==
T Consensus 360 ~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp 439 (560)
T PF06160_consen 360 YEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLP 439 (560)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 2221 2233344455555 77788888888888888888888888876655555555544444432 1232221100
Q ss_pred hHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 000499 747 QDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLI 799 (1460)
Q Consensus 747 q~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~ 799 (1460)
+..-.-+.........|-..|+..-..++.+-..+.........+...-..+.
T Consensus 440 ~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li 492 (560)
T PF06160_consen 440 EDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELI 492 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222233344444455555555555666666666666665555544444433
|
EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane |
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
Probab=92.88 E-value=9.4 Score=40.77 Aligned_cols=78 Identities=22% Similarity=0.202 Sum_probs=35.3
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 000499 387 LHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLK 464 (1460)
Q Consensus 387 ~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~ 464 (1460)
..++-....+...|.+++.+++........+.-+++.....+..+.+.|..|...+.+...++.-+.+|-+.+.+.+.
T Consensus 13 K~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 13 KESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444444444444444444444433333
|
There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding |
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.60 E-value=52 Score=44.66 Aligned_cols=234 Identities=18% Similarity=0.237 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 374 ECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLH 453 (1460)
Q Consensus 374 QcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~ 453 (1460)
.|=..|..+-.+|+....+..++....++.+.++...+++.. .+.-.+.+.-.+|+..+..+.. +-+.=+.+
T Consensus 224 hvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~-------ki~re~~~~Dk~i~~ke~~l~e-rp~li~~k 295 (1141)
T KOG0018|consen 224 HVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERG-------KIRRELQKVDKKISEKEEKLAE-RPELIKVK 295 (1141)
T ss_pred hhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh-hhHHhhcc
Confidence 344566666666666666666666666666666666654433 3444555566666666666666 33333344
Q ss_pred HHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
Q 000499 454 SELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVE--------AETA 525 (1460)
Q Consensus 454 ~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~E--------aE~a 525 (1460)
....+...+|...+......+........+.+.+...+ ..|+.....+.++.++..+ .+..
T Consensus 296 e~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l-----------~av~~~~~~fekei~~~~q~rg~~lnl~d~~ 364 (1141)
T KOG0018|consen 296 ENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKEL-----------KAVEGAKEEFEKEIEERSQERGSELNLKDDQ 364 (1141)
T ss_pred hhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhccccCCcchHH
Confidence 44455555555554443333333333333333333322 2222222222222111111 1222
Q ss_pred HHHHHHhhhcc----HHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHH
Q 000499 526 FQTLQHLHSQS----QDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRE 601 (1460)
Q Consensus 526 L~~Lq~LhSqS----QeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE 601 (1460)
+..-..|+.+. ++++..|..+...-..-|+...+++.++++-+..+...+..+.-.+.--..+|+.+......++.
T Consensus 365 ~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~ 444 (1141)
T KOG0018|consen 365 VEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKH 444 (1141)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222222222 45666666666666666666666666666666555444433322222222344555555555555
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHh
Q 000499 602 TIGKLEAEVELRVDQRNALQQEIYC 626 (1460)
Q Consensus 602 ~~~kLe~Ev~~~~~ek~aLq~el~~ 626 (1460)
...+++..++.-.++--.+..++..
T Consensus 445 d~~~l~~~~~~~~~~~~e~n~eL~~ 469 (1141)
T KOG0018|consen 445 DLDSLESLVSSAEEEPYELNEELVE 469 (1141)
T ss_pred cHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 5555555555444443334444433
|
|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=92.56 E-value=11 Score=39.19 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000499 398 KVADKAESEVERLKQALGKLTEEKEALALQYQQ 430 (1460)
Q Consensus 398 ~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq 430 (1460)
.+-..++.++..++..+..|...+.-++.+++.
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344466778888888888888888888887763
|
These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore |
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.43 E-value=8.8 Score=46.05 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHh
Q 000499 432 LEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKM 491 (1460)
Q Consensus 432 ~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl 491 (1460)
.+.+......++.++-+|.+|+.+|+.+...|-.++......|......+...+.+..++
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555555555555555555554444
|
|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
Probab=92.38 E-value=33 Score=41.88 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=107.2
Q ss_pred HHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHH
Q 000499 322 KLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVAD 401 (1460)
Q Consensus 322 ~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e 401 (1460)
....+...+..|+.+...+..++.+...++.+|--.-.++++++++...+-++ |..-+..+...+..|..+..
T Consensus 124 ~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~-------LQ~s~~Qlk~~~~~L~~r~~ 196 (499)
T COG4372 124 ELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQ-------LQASATQLKSQVLDLKLRSA 196 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34445667778888888899999999999999999999999999985332222 11113333344455555555
Q ss_pred HHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhh
Q 000499 402 KAESEVERLKQA---LGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSN 477 (1460)
Q Consensus 402 ~~e~ev~~Lk~~---l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~ 477 (1460)
+++.+.+.|-.. +....++........++.-++|+...-.+++..-++-.=...|.....+|+.+|..-..||.+.
T Consensus 197 ~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqev 275 (499)
T COG4372 197 QIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEV 275 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555443 6677788888888889999999999999888777777777788888888888887766665433
|
|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
Probab=92.30 E-value=23 Score=42.15 Aligned_cols=128 Identities=27% Similarity=0.305 Sum_probs=55.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HH
Q 000499 358 LARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQC----LE 433 (1460)
Q Consensus 358 l~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~----~~ 433 (1460)
++++.+-+.=.--+++.=-..+..|+..+..++.+...+...+..+..-+..+......|..+...+......+ ..
T Consensus 130 ~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~ 209 (325)
T PF08317_consen 130 YARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQE 209 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHH
Confidence 45554444333333333334556666666666666555555444333333333333333333332222222211 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHH
Q 000499 434 AISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELE 485 (1460)
Q Consensus 434 kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e 485 (1460)
.+..+-.++.....++..++.++..+...+..+......+...++.+.++..
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555544444444444444444444444444444444333
|
|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.20 E-value=58 Score=44.26 Aligned_cols=162 Identities=20% Similarity=0.301 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 241 TLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAE-VQTLKEALARLETEREANIRQYQQC 319 (1460)
Q Consensus 241 ~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E-~~sLk~~la~Lq~Ekea~LlqykqC 319 (1460)
.+|...-.|+.|...+-.--..+..+.-.|..+.-.+++. +++++ -+.|+....+.+ .+..|.++--|
T Consensus 157 ElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~---------k~eaeky~~lkde~~~~q--~e~~L~qLfhv 225 (1141)
T KOG0018|consen 157 ELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEG---------KEEAEKYQRLKDEKGKAQ--KEQFLWELFHV 225 (1141)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhh---------HHHHHHHHHHHHHHHHHH--HHHHHHHHhhh
Confidence 3555666666666666666666667777776666444321 22222 245666655444 45577788889
Q ss_pred HHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----------HHHHHHHHH----H--HH----HHHHH
Q 000499 320 LDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIE----------AEKEAAVVK----Y--EE----CSRMI 379 (1460)
Q Consensus 320 lE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~----------~EKEa~~lq----y--qQ----cLE~I 379 (1460)
.-+|..+-..+++-..+...+..+.++.+.++...|++.++.. .+++..+.. | ++ |--++
T Consensus 226 E~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl 305 (1141)
T KOG0018|consen 226 EACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRL 305 (1141)
T ss_pred hhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHH
Confidence 9999999999999999999999999999999999886665542 334433322 1 11 44677
Q ss_pred HHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 000499 380 SALEDKLLHSEEDSKRINKVADKAESEVERLKQA 413 (1460)
Q Consensus 380 S~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~ 413 (1460)
+..+..|-.++.+...+...+++.+.++..+...
T Consensus 306 ~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~ 339 (1141)
T KOG0018|consen 306 EEIEKDIETAKKDYRALKETIERLEKELKAVEGA 339 (1141)
T ss_pred HHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 7888888888888888877777777766655544
|
|
| >PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins | Back alignment and domain information |
|---|
Probab=92.07 E-value=49 Score=43.15 Aligned_cols=182 Identities=23% Similarity=0.228 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHH
Q 000499 599 LRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRC 678 (1460)
Q Consensus 599 LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~ 678 (1460)
|-.-...=..|+.+..-.+.+||.++.+-.+....+..+..+..+++..+.--+.++.. -|+..-.+
T Consensus 357 Lq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~---~L~s~ma~---------- 423 (739)
T PF07111_consen 357 LQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQ---WLESQMAK---------- 423 (739)
T ss_pred HHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----------
Confidence 33333334566676767788899999999999999999888888877655222222211 22222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHH---HH----HHHHH-------HHHHhhhhhhhhHHHHHh
Q 000499 679 EKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVK---AL----EEVCQ-------NLLAEKSTLVAEKNSLFS 744 (1460)
Q Consensus 679 EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K---~L----Eesc~-------sL~~eKS~L~sEK~~LvS 744 (1460)
|+--+-..--|++-||=|---+.-+|+-+. +| .++|- .|..|---|-.||+.|.+
T Consensus 424 -----------ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~a 492 (739)
T PF07111_consen 424 -----------VEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDA 492 (739)
T ss_pred -----------HHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 222222333344444444444333333211 10 12222 344555556667777777
Q ss_pred hhhHHHH---------------HHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHH
Q 000499 745 QLQDVNE---------------NLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVN 804 (1460)
Q Consensus 745 QLq~~~~---------------~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~ 804 (1460)
+|+.... ...+|.++...||.++.+....+.++..++...+.+.+.-..+-..+..+...
T Consensus 493 eLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~ 567 (739)
T PF07111_consen 493 ELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQ 567 (739)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 7764332 24478888888888888888888888877777777766665555555444433
|
The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm |
| >PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans | Back alignment and domain information |
|---|
Probab=92.01 E-value=17 Score=44.60 Aligned_cols=85 Identities=24% Similarity=0.352 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHH
Q 000499 233 GKAEMEILTLKNALAKLEAEKEAGLLQYRQSL-----------ERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEA 301 (1460)
Q Consensus 233 ~kAe~EI~~Lkk~i~~LqtEKE~~~~qY~~sl-----------ek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~ 301 (1460)
.....|+..+++....|+..-|..+.+|..-+ -||..||.++++.= .-=..|+-.||++
T Consensus 215 ~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~----------elHq~Ei~~LKqe 284 (395)
T PF10267_consen 215 QKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLT----------ELHQNEIYNLKQE 284 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 35556666667777766666666666655433 36666777766532 2235688999999
Q ss_pred HHHHHHHHH-----HHHH---HHHHHHHHHHhHH
Q 000499 302 LARLETERE-----ANIR---QYQQCLDKLSNME 327 (1460)
Q Consensus 302 la~Lq~Eke-----a~Ll---qykqClE~Is~LE 327 (1460)
|+-.++..+ .+.- ..-+|..+|++||
T Consensus 285 La~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 285 LASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 986665421 1100 3445666777776
|
Its function is unknown. |
| >PF15397 DUF4618: Domain of unknown function (DUF4618) | Back alignment and domain information |
|---|
Probab=91.93 E-value=30 Score=40.40 Aligned_cols=146 Identities=18% Similarity=0.167 Sum_probs=88.4
Q ss_pred HhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHhhhc--
Q 000499 460 FAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEE-RLRFVEAETAFQTL-QHLHSQ-- 535 (1460)
Q Consensus 460 ~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E-~~k~~EaE~aL~~L-q~LhSq-- 535 (1460)
..-|.++..++..|-..|..|..+.+..........+.+-++..-....=.+++-= +.+.-.|.+.|+.+ ++..+.
T Consensus 5 r~sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~ 84 (258)
T PF15397_consen 5 RTSLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLS 84 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHH
Confidence 44566777788889889999999999888888888888888877666665555543 44566667777766 444332
Q ss_pred -cHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 536 -SQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVE 611 (1460)
Q Consensus 536 -SQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~ 611 (1460)
.|.++..|...|.+....|+.+-+.+ |-+.-|..++=. .|.-+ +.. .=...|||+..|.+++...-..+.
T Consensus 85 ~Lq~ql~~l~akI~k~~~el~~L~TYk-D~EYPvK~vqIa--~L~rq-lq~--lk~~qqdEldel~e~~~~el~~l~ 155 (258)
T PF15397_consen 85 KLQQQLEQLDAKIQKTQEELNFLSTYK-DHEYPVKAVQIA--NLVRQ-LQQ--LKDSQQDELDELNEMRQMELASLS 155 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHH--HHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 26666667777777777776665433 344333333111 11000 000 112456777777777766444444
|
|
| >PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] | Back alignment and domain information |
|---|
Probab=91.78 E-value=6.8 Score=44.98 Aligned_cols=113 Identities=30% Similarity=0.417 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000499 290 IAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAV 369 (1460)
Q Consensus 290 ~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~ 369 (1460)
.|+.+-+-|+..|.+++.+...+--.+....+++-.|+.+...+++++..|-..+..|+.....|+........++..
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~-- 79 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQ-- 79 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 356667778888888888888888888999999999999999999999999999999999999999988888777764
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000499 370 VKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGK 416 (1460)
Q Consensus 370 lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~ 416 (1460)
|+.++..++..+.++......-+.++..|+..+..
T Consensus 80 ------------Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 80 ------------LEQELREAEAEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555433
|
Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C. |
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
Probab=91.66 E-value=36 Score=40.71 Aligned_cols=217 Identities=22% Similarity=0.276 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHH
Q 000499 259 QYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAV 338 (1460)
Q Consensus 259 qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak 338 (1460)
.|.+-.-||..|..+-..+..++.....++.....+++.|+++-.++++..+.- .|-||
T Consensus 21 t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqE-------EE~is-------------- 79 (310)
T PF09755_consen 21 TREQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQE-------EEFIS-------------- 79 (310)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH--------------
Confidence 346666677777766555555555555555555566666666655443332221 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhHhHHHHHHHHH-HHHHHHHHHHHHH
Q 000499 339 ELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEE---CSRMISALEDKLLHSEEDSKRINKVAD-KAESEVERLKQAL 414 (1460)
Q Consensus 339 ~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQ---cLE~IS~LE~ki~~aee~~~~ln~~~e-~~e~ev~~Lk~~l 414 (1460)
.+|.+-+..++.||+.....|.+ ||- -.|..+|..+...--.+-..++ .-+.-|..|...|
T Consensus 80 -------------N~LlKkl~~l~keKe~L~~~~e~EEE~lt--n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i 144 (310)
T PF09755_consen 80 -------------NTLLKKLQQLKKEKETLALKYEQEEEFLT--NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKI 144 (310)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 24666677777888888778875 541 1222232222222111111111 1244567778888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHH---
Q 000499 415 GKLTEEKEALALQYQQCLEAISILEHKLARAEE-EAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQK--- 490 (1460)
Q Consensus 415 ~~L~eekeal~l~~qq~~~kI~~LE~els~sQE-Ev~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ek--- 490 (1460)
..|..+..+.+..+.++...-..||+.+-+-|+ -|+|||--++.+...=+.+... |+...+...+-.+.....
T Consensus 145 ~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~---l~~~~s~~~s~~d~~~~~~~~ 221 (310)
T PF09755_consen 145 ERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEK---LEQPVSAPPSPRDTVNVSEEN 221 (310)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccccCCCCCcchHHhhcccC
Confidence 888877777888888887777779998887665 4788887777666555444443 322222222222221100
Q ss_pred --hhhhhHHHHHHHHHHHHHHHHHHH
Q 000499 491 --MGSQSQELTEKQKELGRLWTCIQE 514 (1460)
Q Consensus 491 --l~~~~qeL~eK~~Ei~~Lq~slq~ 514 (1460)
..-..--+.....||.+|..-+..
T Consensus 222 Dt~e~~~shI~~Lr~EV~RLR~qL~~ 247 (310)
T PF09755_consen 222 DTAERLSSHIRSLRQEVSRLRQQLAA 247 (310)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 011223355666677777777765
|
|
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.51 E-value=46 Score=41.63 Aligned_cols=35 Identities=20% Similarity=0.103 Sum_probs=25.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 000499 760 NNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNE 794 (1460)
Q Consensus 760 ns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e 794 (1460)
|-.--+|++++.--+.+.+.++..+-.+|.-.+.+
T Consensus 546 nL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~ 580 (622)
T COG5185 546 NLLSKTSILDAEQLVQSTEIKLDELKVDLNRKRYK 580 (622)
T ss_pred hhhccchHhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33345677888888888888888888888766554
|
|
| >PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure | Back alignment and domain information |
|---|
Probab=91.08 E-value=53 Score=41.56 Aligned_cols=62 Identities=19% Similarity=0.321 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhc
Q 000499 498 LTEKQKELGRLWT-CIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTR 560 (1460)
Q Consensus 498 L~eK~~Ei~~Lq~-slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~ 560 (1460)
|..|.+-|..|+. |..+......-. +.+..+.......+++++.|...|+.+...+.+++..
T Consensus 248 Lq~kEklI~~LK~~~~~~~~~~~~~~-~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~ 310 (511)
T PF09787_consen 248 LQSKEKLIESLKEGCLEEGFDSSTNS-IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQ 310 (511)
T ss_pred hcCHHHHHHHHHhcccccccccccch-hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666766 554321110000 2234444445555678888887777777777777664
|
They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 []. |
| >PF13514 AAA_27: AAA domain | Back alignment and domain information |
|---|
Probab=90.91 E-value=82 Score=43.46 Aligned_cols=331 Identities=23% Similarity=0.299 Sum_probs=142.8
Q ss_pred HHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000499 242 LKNALAKLEAEKEAGL------LQYRQSLERLSNLESEVSHAREDSKGLS---EQASIAEAEVQTLKEALARLETEREAN 312 (1460)
Q Consensus 242 Lkk~i~~LqtEKE~~~------~qY~~slek~~~LE~~is~aQ~~~~~L~---era~~ae~E~~sLk~~la~Lq~Ekea~ 312 (1460)
|-..+..|..+.+..+ ..+++.+.+|.+++.+|..++....... .....++.+...|...+..++.+...-
T Consensus 128 l~~~~~~L~~ea~~Lfkprg~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l 207 (1111)
T PF13514_consen 128 LSQVLKQLDKEADELFKPRGRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRL 207 (1111)
T ss_pred HHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666655543 3577777777777777777766655443 233344555555555555554442211
Q ss_pred --HHHHHHHHHHHHhHHHHHh----------HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHH
Q 000499 313 --IRQYQQCLDKLSNMEKNIS----------RAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYE--ECSRM 378 (1460)
Q Consensus 313 --LlqykqClE~Is~LE~~~s----------~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyq--QcLE~ 378 (1460)
+.+.---+..+..|+..+. ........+..+...+...+..+..++..+..+.++..+-.. ..-..
T Consensus 208 er~~~~~p~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~ 287 (1111)
T PF13514_consen 208 ERLRRAWPLLAELQQLEAELAELGEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAE 287 (1111)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHH
Confidence 1111111222222333322 112222233344444555555555555555444433211100 11123
Q ss_pred HHHHHhh---hhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhH-H-HHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 379 ISALEDK---LLHSEEDSKRINKVADKAESEVERLKQALGKL-T-EEKEA------LALQYQQCLEAISILEHKLARAEE 447 (1460)
Q Consensus 379 IS~LE~k---i~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L-~-eekea------l~l~~qq~~~kI~~LE~els~sQE 447 (1460)
|..|... +..+..+..++..++......+..+...++-= . ....+ ...++..+......++..+..++.
T Consensus 288 I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~ 367 (1111)
T PF13514_consen 288 IEALEEQRGEYRKARQDLPRLEAELAELEAELRALLAQLGPDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARR 367 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 33334444444444444444444444444300 0 00111 222333333333333333333333
Q ss_pred HHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 448 EAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQ 527 (1460)
Q Consensus 448 Ev~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~ 527 (1460)
+..+...++......+..++..- ....+...+.... ........+.....++...+.-+..-....----..+.
T Consensus 368 ~l~~~~~~~~~~~~~~~~l~~~~-----~~~~l~~al~~~~-~~~d~~~~~~~~~~~~~~~~~~l~~~l~~L~~w~~~~~ 441 (1111)
T PF13514_consen 368 ELEEAERELEQLQAELAALPAPP-----DPEALRAALEAAQ-RLGDLEARLQEAEQALEAAERRLAAALAALGPWSGDLD 441 (1111)
T ss_pred HHHHHHHHHHHHHHHHhhCcccC-----CChHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChH
Confidence 33333333333333332222110 0011222222211 11122233333444444444443332221111112334
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHhccC
Q 000499 528 TLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGL 578 (1460)
Q Consensus 528 ~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn~~L 578 (1460)
.+..+.-++.+.+.....+...+...+......-..+..++..+..+...|
T Consensus 442 ~l~~~~~P~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 492 (1111)
T PF13514_consen 442 ALAALPLPSRETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRL 492 (1111)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777888888877777777777777777777776666665555555
|
|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
Probab=90.85 E-value=33 Score=38.86 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000499 297 TLKEALARLETEREANIR 314 (1460)
Q Consensus 297 sLk~~la~Lq~Ekea~Ll 314 (1460)
.....+.++..+++.+..
T Consensus 66 ~~~~~i~~~~~erdq~~~ 83 (207)
T PF05010_consen 66 LSEAEIQKLLKERDQAYA 83 (207)
T ss_pred hHHHHHHHHHhhHHHHHH
Confidence 334445555555555543
|
The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) []. |
| >COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.44 E-value=34 Score=40.11 Aligned_cols=169 Identities=22% Similarity=0.318 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhhhchHhHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 000499 547 LQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYC 626 (1460)
Q Consensus 547 i~~~~~~L~~le~~k~~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~ 626 (1460)
|.+--..++++.....+++.+|..+...+..+..+ +.+++.+|..++.... .|+.+|..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k-------~~~~~~~i~~~~~eik--------------~l~~eI~~ 91 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSK-------IDELQKEIDQSKAEIK--------------KLQKEIAE 91 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--------------HHHHHHHH
Confidence 66666667777777777777777775443333222 4455555555554333 35556655
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcC---------CCccchhhhHHHHHHHhhhhHHHHHH-------hHHHHHHHHHHHHHH
Q 000499 627 LKEELNELNKKHQAMVEQVESVS---------LNPENFGLSVKELQDENSKLKEVYER-------DRCEKVALLEKLEIM 690 (1460)
Q Consensus 627 lkee~~~Ln~k~~~l~e~l~~l~---------~~~e~~~~~VkeLQ~~n~~LkE~~s~-------~~~EK~~L~~kLq~m 690 (1460)
+++.|...+..+..=...|..-| ++.++|. ||-.+..-+..+++. +..+|..|-.+=.
T Consensus 92 ~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfs----D~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~-- 165 (265)
T COG3883 92 LKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFS----DLISRVTAISVIVDADKKILEQQKEDKKSLEEKQA-- 165 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--
Confidence 55555554444332222232222 2333343 333332222222221 1222222211111
Q ss_pred HHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 000499 691 EKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLF 743 (1460)
Q Consensus 691 ekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eKS~L~sEK~~Lv 743 (1460)
.+=+++.-|..-.-++..-+..|......+....-.++.+.+.+..|++.|.
T Consensus 166 -~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 166 -ALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 1122223333333344445556666677777777777777777777877777
|
|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
Probab=90.32 E-value=70 Score=41.70 Aligned_cols=340 Identities=17% Similarity=0.165 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHH--HHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHH
Q 000499 339 ELSDRASKAEIEAQTL-------KLDLARIEAEKEAAVVK--YEECSRMISALEDKLLHSEEDSKRINKVADKAESEVER 409 (1460)
Q Consensus 339 ~lneRa~~AE~E~~~L-------Kqel~~l~~EKEa~~lq--yqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~ 409 (1460)
.+.+|+..++.+|.++ +.+...+..|--+.+.. +..|-+.|..|-.+=-.+-..---....|.+++.+.++
T Consensus 406 e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke 485 (961)
T KOG4673|consen 406 EYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKE 485 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 5557888888777763 44444444444444444 44677777666443111100000111224444444444
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHhhhhhHHHHHhHHHHhhHhhHH
Q 000499 410 LKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDN-------GFAKLKGAEEKCLLLERSNQTLHS 482 (1460)
Q Consensus 410 Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~-------~~~kL~~lE~~~~~LE~~~q~L~s 482 (1460)
-..=+.++.+.+--+....+.+..-+...|..-...++-|.+++.++.. ......++|.++..++..+-.+..
T Consensus 486 ~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 486 AETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS 565 (961)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4333334444444444444444444444444444455555555555422 223333444454455555555555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchH
Q 000499 483 ELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQ 562 (1460)
Q Consensus 483 E~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~ 562 (1460)
++++-+.. +..++.+.+. -|-+.+.|-++...-+|.+... - -.-+..||..+...|..-+++.+
T Consensus 566 Dlqk~nrl---kQdear~~~~---~lvqqv~dLR~~L~~~Eq~aar---------r-Ed~~R~Ei~~LqrRlqaaE~R~e 629 (961)
T KOG4673|consen 566 DLQKENRL---KQDEARERES---MLVQQVEDLRQTLSKKEQQAAR---------R-EDMFRGEIEDLQRRLQAAERRCE 629 (961)
T ss_pred hHHHHhhh---hhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---------H-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 43332221 1112222111 1112222222222222222222 1 12367778888888888888888
Q ss_pred hHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000499 563 SLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMV 642 (1460)
Q Consensus 563 ~L~eev~~l~EEn~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~ 642 (1460)
.|-.+|-.. -.|+ ..-|..||.=+++---.-+++|.-+.-+.++...|..-.- + +-++-.
T Consensus 630 el~q~v~~T------TrPL----lRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v-~---------~eqgek 689 (961)
T KOG4673|consen 630 ELIQQVPET------TRPL----LRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINV-L---------EEQGEK 689 (961)
T ss_pred HHHhhcccc------ccHH----HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHH-H---------HHhhhH
Confidence 776665443 2222 2246666666666555555655555545555544433221 0 013333
Q ss_pred HHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHH
Q 000499 643 EQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALE 722 (1460)
Q Consensus 643 e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LE 722 (1460)
.++-++++.+-+... |. +-+++|...|.-.|. +=--+-.-++.-++.+..|++.|.+....|+
T Consensus 690 qElL~~~~~l~s~~~-----q~---------sllraE~~~l~~~le---~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le 752 (961)
T KOG4673|consen 690 QELLSLNFSLPSSPI-----QL---------SLLRAEQGQLSKSLE---KERNRAAENRQEYLAAQEEADTLEGRANQLE 752 (961)
T ss_pred HHHHHHhcCCCcchh-----HH---------HHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443322211 11 122334333322221 1111223345566777888888888888888
Q ss_pred HHHHHHHHh
Q 000499 723 EVCQNLLAE 731 (1460)
Q Consensus 723 esc~sL~~e 731 (1460)
.-|+-++.+
T Consensus 753 ~e~r~~k~~ 761 (961)
T KOG4673|consen 753 VEIRELKRK 761 (961)
T ss_pred HHHHHHHHH
Confidence 888776543
|
|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.24 E-value=46 Score=39.55 Aligned_cols=49 Identities=29% Similarity=0.333 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000499 596 ILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQ 644 (1460)
Q Consensus 596 i~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~ 644 (1460)
...++.....+..++.--....+.+..++-.++.++.++++.+.++...
T Consensus 202 ~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~ 250 (294)
T COG1340 202 ADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAK 250 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333443334445566667777777777777766666553
|
|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=89.24 E-value=49 Score=39.96 Aligned_cols=158 Identities=17% Similarity=0.204 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHh
Q 000499 400 ADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQT 479 (1460)
Q Consensus 400 ~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~ 479 (1460)
+...+.++..|..+|..|-+....-......+...|..+...+..++..-.+|..-..........++
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~------------ 115 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAE------------ 115 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHH------------
Confidence 33344455555555555555544445555566666666666666665555555554333222222222
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHH-HHHhh
Q 000499 480 LHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQI-LKDMG 558 (1460)
Q Consensus 480 L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~-L~~le 558 (1460)
..+..+...+........+.+-.|..|+.-|..-..+.-..+++|...+.-....+..+..|..+|+..... ..++.
T Consensus 116 --~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~ 193 (343)
T PRK09039 116 --GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELN 193 (343)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233334434444455556666666666666555566777788888777788889999999999988754 88888
Q ss_pred hchHhHHHHHHHH
Q 000499 559 TRNQSLQEEVEKV 571 (1460)
Q Consensus 559 ~~k~~L~eev~~l 571 (1460)
.-+..+-..+..+
T Consensus 194 ~~~~~~~~~l~~~ 206 (343)
T PRK09039 194 RYRSEFFGRLREI 206 (343)
T ss_pred HhHHHHHHHHHHH
Confidence 8888886666543
|
|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
Probab=89.12 E-value=57 Score=39.02 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHH
Q 000499 588 SIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNK 636 (1460)
Q Consensus 588 sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~ 636 (1460)
+|++|..=|+.=|.+...+|.++-.. .=.|=++.+..-.++..+..
T Consensus 71 sC~EL~~~I~egr~~~~~~E~et~~~---nPpLF~EY~~a~~d~r~lm~ 116 (312)
T smart00787 71 SCKELKKYISEGRDLFKEIEEETLIN---NPPLFKEYFSASPDVKLLMD 116 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc---CcHHHHHHHcCCHHHHHHHH
Confidence 78999999999999888888877622 22355566555555444433
|
This domain is found in cell division proteins which are required for kinetochore-spindle association. |
| >KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=88.89 E-value=53 Score=38.29 Aligned_cols=49 Identities=18% Similarity=0.155 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHH
Q 000499 345 SKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRI 396 (1460)
Q Consensus 345 ~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~l 396 (1460)
.+++...+.|+-++.+..+ -.-.||-|....+|.|+..+++...--..+
T Consensus 62 rdl~t~nqrl~~E~e~~Ke---k~e~q~~q~y~q~s~Leddlsqt~aikeql 110 (333)
T KOG1853|consen 62 RDLETRNQRLTTEQERNKE---KQEDQRVQFYQQESQLEDDLSQTHAIKEQL 110 (333)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544432 333456677778899999887776543333
|
|
| >KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=88.46 E-value=95 Score=40.71 Aligned_cols=97 Identities=26% Similarity=0.354 Sum_probs=70.3
Q ss_pred hhchHHHHhchHhhhhhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhH-------HHHHHHH-----
Q 000499 862 VQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLL-------FECQKLL----- 929 (1460)
Q Consensus 862 ~k~se~~l~~lE~~is~LqEe~~~r~~~~eeE~dk~~~AqieifiLq~~l~Dl~~kn~~ll-------~EcQk~~----- 929 (1460)
..+|+..++.|..+|..|.++..-|-.. ++||..+=+.|. .|-++|.
T Consensus 221 ~~is~etl~~L~~~v~~l~~~k~qr~~k---------------------l~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~ 279 (660)
T KOG4302|consen 221 RSISDETLDRLDKMVKKLKEEKKQRLQK---------------------LQDLRTKLLELWNLLDTSDEERQRFVHVTES 279 (660)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhccCCHHHHHHHccccHH
Confidence 5577888888888888887776655443 444444433333 2344443
Q ss_pred ---HhhhhHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000499 930 ---QESSLSEKLIHKLENENCE-QQEEMRSLVDQIKVLRVQLYQLLEILEIDAD 979 (1460)
Q Consensus 930 ---eas~~se~lIseLe~E~~~-~q~e~~~L~~~~~~Lr~gi~qv~k~L~i~~~ 979 (1460)
..+.++..+|.+.+.|+.- .+....-+-.-|.+.|..|.+.+..+++..+
T Consensus 280 e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~Eleel~~~~h~s~~ 333 (660)
T KOG4302|consen 280 EATEPNSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKRSELEELWRLLHYSEE 333 (660)
T ss_pred HhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6788899999999999987 5566666777889999999999999988775
|
|
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
Probab=87.81 E-value=23 Score=38.37 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000499 336 DAVELSDRASKAEIEAQTLKLDLARIE 362 (1460)
Q Consensus 336 eak~lneRa~~AE~E~~~LKqel~~l~ 362 (1460)
+....+.+......++..+...+..+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~ 108 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELE 108 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444333333
|
The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions []. |
| >PF15397 DUF4618: Domain of unknown function (DUF4618) | Back alignment and domain information |
|---|
Probab=87.60 E-value=65 Score=37.80 Aligned_cols=109 Identities=20% Similarity=0.216 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh-hhhHHHHHhHHHHhhHhhHH
Q 000499 404 ESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAK-LKGAEEKCLLLERSNQTLHS 482 (1460)
Q Consensus 404 e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~k-L~~lE~~~~~LE~~~q~L~s 482 (1460)
+..+++++++...|.+.+..+...++.+.+.-..-=..+.+.+.-..+.-.=|...+.+ +.++..+ |+.-.....+
T Consensus 5 r~sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~e---Lqe~eek~e~ 81 (258)
T PF15397_consen 5 RTSLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAE---LQEWEEKEES 81 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHH---HHHHHHHHHh
Confidence 45566777777777777777777777666665555555555555555555444444333 2222222 2222222233
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000499 483 ELESMVQKMGSQSQELTEKQKELGRLWTCIQEE 515 (1460)
Q Consensus 483 E~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E 515 (1460)
.+..|.+.+...+..+...+.||.-|.+-+..|
T Consensus 82 ~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~E 114 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHE 114 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333333333444445555555555555544
|
|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.14 E-value=11 Score=46.36 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=88.8
Q ss_pred HHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHHHHHHHHHH
Q 000499 741 SLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLE 820 (1460)
Q Consensus 741 ~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~~~~l~~le 820 (1460)
.|.|||++-..=.+ ...+.++. +++++.+..++.+=.-+..+.++.+.+.+++..+++-+-.++.+++...
T Consensus 325 ll~sqleSqr~y~e---~~~~e~~q------sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~ 395 (493)
T KOG0804|consen 325 LLTSQLESQRKYYE---QIMSEYEQ------SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQ 395 (493)
T ss_pred hhhhhhhHHHHHHH---HHHHHHHH------HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677776422222 33333333 5889999999999888999999999999999999999999999999888
Q ss_pred HHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhhh
Q 000499 821 KSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQIS 877 (1460)
Q Consensus 821 k~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~is 877 (1460)
++-.++.+---.+....+.-..++++++.++. .+....+..|.+|+.|+.
T Consensus 396 kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~-------~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 396 KELKEEREENKKLIKNQDVWRGKLKELEEREK-------EALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 88777775555566666666677777665554 445666788888888864
|
|
| >PF14073 Cep57_CLD: Centrosome localisation domain of Cep57 | Back alignment and domain information |
|---|
Probab=86.93 E-value=56 Score=36.40 Aligned_cols=118 Identities=30% Similarity=0.308 Sum_probs=84.6
Q ss_pred hhHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhchHHHHhchHhhh
Q 000499 797 CLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSETRLAGMESQI 876 (1460)
Q Consensus 797 ~l~~Ek~~L~sQl~~~~~~l~~lek~~~ele~k~~~lq~Ek~~~~~~veel~~sL~~e~q~h~~~~k~se~~l~~lE~~i 876 (1460)
.+......+.+||.+...++..||+++........++..|+..++.+ +++|--++...
T Consensus 54 e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~----q~~l~~e~~~~------------------ 111 (178)
T PF14073_consen 54 ELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQ----QVSLQRERQQD------------------ 111 (178)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHhccc------------------
Confidence 33455789999999999999999999999999999999998776543 44444443211
Q ss_pred hhHHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHH
Q 000499 877 SFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQQEEMRSL 956 (1460)
Q Consensus 877 s~LqEe~~~r~~~~eeE~dk~~~AqieifiLq~~l~Dl~~kn~~ll~EcQk~~eas~~se~lIseLe~E~~~~q~e~~~L 956 (1460)
+.+ ++-.++.| --|-.||-++--.-.++++=|..||......+-..+-+
T Consensus 112 ------------------------~~~---~~~klekL----e~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlv 160 (178)
T PF14073_consen 112 ------------------------QSE---LQAKLEKL----EKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLV 160 (178)
T ss_pred ------------------------hhh---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11111111 12445888888888889999999999888888888888
Q ss_pred HHHHHHHHHHH
Q 000499 957 VDQIKVLRVQL 967 (1460)
Q Consensus 957 ~~~~~~Lr~gi 967 (1460)
.+.-.-|..|.
T Consensus 161 QdkAaqLQt~l 171 (178)
T PF14073_consen 161 QDKAAQLQTGL 171 (178)
T ss_pred HHHHHHHHhhH
Confidence 88777777774
|
|
| >PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] | Back alignment and domain information |
|---|
Probab=86.51 E-value=23 Score=40.85 Aligned_cols=107 Identities=32% Similarity=0.429 Sum_probs=61.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000499 353 TLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCL 432 (1460)
Q Consensus 353 ~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~ 432 (1460)
.|..-+....++...+.-.....-++|..|+.+...+++....|-.....++...+.|...-....+++..|...+....
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~ 88 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAE 88 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333332223344567788888888888887777776666777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000499 433 EAISILEHKLARAEEEAQRLHSELDNG 459 (1460)
Q Consensus 433 ~kI~~LE~els~sQEEv~RL~~Ei~~~ 459 (1460)
..|..|.........++.+|..++..-
T Consensus 89 ~~i~~l~ee~~~ke~Ea~~lq~el~~a 115 (246)
T PF00769_consen 89 AEIARLEEESERKEEEAEELQEELEEA 115 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777664433
|
Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C. |
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
Probab=86.25 E-value=15 Score=38.22 Aligned_cols=100 Identities=34% Similarity=0.346 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHhHhHHH
Q 000499 1028 VALLGQLKLEAENLATERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGA 1107 (1460)
Q Consensus 1028 ~t~L~ql~~e~~~L~~Ek~~L~~E~~~~s~q~l~Lq~e~~eLle~n~qL~~~~~~~~~ree~lk~E~~~l~~~l~~l~~s 1107 (1460)
+.++..++...+.++.|...+..++.....+--.+..+...|...|++++ ....++..|..++.+|+.-
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~-----------~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR-----------ALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999888888888888888888887774 3455677788888888889
Q ss_pred HHHhHhhhhhhhhhhhhHHHHhhhhHHhhhh
Q 000499 1108 QQSLQDQNCKVLDEKKSLMKKVLDLQEEKHS 1138 (1460)
Q Consensus 1108 ~~~lq~e~~~~~~e~~sL~k~~~~l~e~~~~ 1138 (1460)
|+++=+=+.--.++.+-|.--+.|+++-|..
T Consensus 84 y~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 84 YQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9988777777777888888888888877654
|
The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family []. |
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.22 E-value=1.2e+02 Score=39.47 Aligned_cols=42 Identities=33% Similarity=0.406 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHH
Q 000499 267 LSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETE 308 (1460)
Q Consensus 267 ~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~E 308 (1460)
...-+.++..+|..+..+..+....+.++..|...+.++..+
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e 364 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEE 364 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444445555555555555444433
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=86.18 E-value=1.1e+02 Score=39.13 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHH
Q 000499 429 QQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLE 474 (1460)
Q Consensus 429 qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE 474 (1460)
....+.+...-..+.....++.+....++.--..|..++.+...+.
T Consensus 269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~ 314 (563)
T TIGR00634 269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIK 314 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 3344444444444444444455544455444555555555544443
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=86.11 E-value=1e+02 Score=38.48 Aligned_cols=157 Identities=20% Similarity=0.176 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHH------------HHHhHHHHhhHhhHHHHHHH
Q 000499 420 EKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAE------------EKCLLLERSNQTLHSELESM 487 (1460)
Q Consensus 420 ekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE------------~~~~~LE~~~q~L~sE~e~L 487 (1460)
++-.+.-+|.-+++-...-|.--.++=.+=.|.+.||.-...+-+.+| +.+..|-+-...|++-.+++
T Consensus 251 EnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dkl 330 (502)
T KOG0982|consen 251 ENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKL 330 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444455555666555555544444 44444444444444444444
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhh--------
Q 000499 488 VQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGT-------- 559 (1460)
Q Consensus 488 ~ekl~~~~qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~-------- 559 (1460)
.+-.+-....| +.+.--+-.+..-+...--.|..++.-+--.|+=+--|..+++.+-...-..++
T Consensus 331 aee~qr~sd~L-------E~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rgrsSa 403 (502)
T KOG0982|consen 331 AEEDQRSSDLL-------EALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRGRSSA 403 (502)
T ss_pred hhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhH
Confidence 44433222222 222222222223333334466677777766677555666666655444334442
Q ss_pred chHhHHHHHHHHHHHhccCccccc
Q 000499 560 RNQSLQEEVEKVKEENKGLNELNL 583 (1460)
Q Consensus 560 ~k~~L~eev~~l~EEn~~L~e~n~ 583 (1460)
+-.-|..+|.+++..|..|.++|-
T Consensus 404 Re~eleqevkrLrq~nr~l~eqne 427 (502)
T KOG0982|consen 404 REIELEQEVKRLRQPNRILSEQNE 427 (502)
T ss_pred HHHHHHHHHHHhccccchhhhhhh
Confidence 344678999999999999988875
|
|
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
Probab=86.10 E-value=16 Score=39.53 Aligned_cols=100 Identities=24% Similarity=0.402 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHHHHHHhhh
Q 000499 589 IKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSK 668 (1460)
Q Consensus 589 Ik~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~ 668 (1460)
+..++.|+..+.+.+..+..+.....+....++..+...++.+..+...+..+..++..+. ..+++.+.....
T Consensus 90 l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~-------~~~~~~~~~~~~ 162 (191)
T PF04156_consen 90 LQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ-------KELQDSREEVQE 162 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 5556666666666666666666655555555666666666777777777777776665553 567777777777
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000499 669 LKEVYERDRCEKVALLEKLEIMEKLLE 695 (1460)
Q Consensus 669 LkE~~s~~~~EK~~L~~kLq~mekLlE 695 (1460)
+...+.........+..+++..+.+++
T Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~~l~~ 189 (191)
T PF04156_consen 163 LRSQLERLQENLQQLEEKIQELQELLE 189 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777766665554
|
The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions []. |
| >PF15254 CCDC14: Coiled-coil domain-containing protein 14 | Back alignment and domain information |
|---|
Probab=86.04 E-value=28 Score=45.62 Aligned_cols=151 Identities=19% Similarity=0.263 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHHHHhHhhhhcchhhHHHHHHHhhhhhhHHHH-------------------hhHHHHHHHHhhHHHHHh
Q 000499 1162 DVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKLEDVQM-------------------QNSLLKQSLEKSENELVA 1222 (1460)
Q Consensus 1162 ~~~~Ek~~~l~~L~e~l~~L~~~~~eL~~~v~~l~~kle~~e~-------------------en~~Lk~~le~~~~eL~~ 1222 (1460)
++-.|.+.. |.-|.+.|+-|.+.+++|+..|...+. -|.-|..-|.-+...+.-
T Consensus 380 niq~EIALA-------~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~ 452 (861)
T PF15254_consen 380 NIQVEIALA-------MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQEL 452 (861)
T ss_pred cchhhhHhh-------hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445565555 566788899999999999888754332 222222222223333333
Q ss_pred hhhhhh-------hhhhHhhhhhhhhhhhhHHHHHHHHHHHhhhHhhHHHHHHHhhhhhhhhhhH---------hHHhhh
Q 000499 1223 IGCVRD-------QLNCEIANGKDLLSRKEKELFVAEQILCSLQNERTELHMKVEDLTCKYDEAK---------IIQEDQ 1286 (1460)
Q Consensus 1223 ~~s~~~-------~l~~ei~~~~~~l~qkd~elleae~~~~~~~~~~~El~~~ve~Lk~~~eea~---------~i~e~~ 1286 (1460)
..+-++ .+-.+..+....+..||.+|++..+.+. --...+|.+.++|- .--.+-
T Consensus 453 lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d----------~e~~rik~ev~eal~~~k~~q~kLe~sek 522 (861)
T PF15254_consen 453 LQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFD----------IETTRIKIEVEEALVNVKSLQFKLEASEK 522 (861)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 333333 3334444466677777877777766432 12223344444432 233467
Q ss_pred hhhHHhhhhhhhhhhhhHHhHHHhhHHHHHHHHHHHHHHhhhhhh
Q 000499 1287 GKQIRKLTEDYDCQIKETRCIHELNMKLEAELGKLLEELEGTRYR 1331 (1460)
Q Consensus 1287 ekqi~~Ls~~~~~q~~Ei~~l~e~N~~Le~e~~~L~~E~~~~k~r 1331 (1460)
|++|+.++-. .+|.||.-|++.+++||.=|.+|.-.+-.--+|
T Consensus 523 EN~iL~itlr--QrDaEi~RL~eLtR~LQ~Sma~lL~dls~D~ar 565 (861)
T PF15254_consen 523 ENQILGITLR--QRDAEIERLRELTRTLQNSMAKLLSDLSVDSAR 565 (861)
T ss_pred hhhHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 8889887632 347799999999999999999998877665555
|
|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=85.97 E-value=92 Score=38.75 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 333 AEADAVELSDRASKAEIEAQTLKLDL 358 (1460)
Q Consensus 333 aqeeak~lneRa~~AE~E~~~LKqel 358 (1460)
.+.....+..++..++.++..++..-
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444445555555666666665443
|
Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. |
| >PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
Probab=85.77 E-value=13 Score=44.16 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 397 NKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLH 453 (1460)
Q Consensus 397 n~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~ 453 (1460)
..++..++.+...++..-...+.+.-....++.+..+....+...+...+..+.||+
T Consensus 77 ~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 77 DQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666667777777777777888888888888888888877776
|
In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A. |
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
Probab=85.33 E-value=1.1e+02 Score=38.40 Aligned_cols=105 Identities=22% Similarity=0.284 Sum_probs=57.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHh-hHHHHHHH
Q 000499 409 RLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQT-LHSELESM 487 (1460)
Q Consensus 409 ~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~-L~sE~e~L 487 (1460)
+|+..|..|.+++=.+.+.-.....++.+|...+...|..+.--+.|-+.+.-.|+-.=.....|+..-.+ ++.-...+
T Consensus 366 kLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksv 445 (527)
T PF15066_consen 366 KLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSV 445 (527)
T ss_pred HHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHH
Confidence 36777777777777777777777777777777777666555444444333333333333333333222221 11111111
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 000499 488 VQKMGSQSQELTEKQKELGRLWTCIQE 514 (1460)
Q Consensus 488 ~ekl~~~~qeL~eK~~Ei~~Lq~slq~ 514 (1460)
.+=+ ..++-|..|-.||++||...-+
T Consensus 446 sqcl-Emdk~LskKeeeverLQ~lkge 471 (527)
T PF15066_consen 446 SQCL-EMDKTLSKKEEEVERLQQLKGE 471 (527)
T ss_pred HHHH-HHHHHhhhhHHHHHHHHHHHHH
Confidence 1111 2455677788888888876644
|
|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.98 E-value=1.5e+02 Score=39.45 Aligned_cols=63 Identities=21% Similarity=0.176 Sum_probs=28.9
Q ss_pred HHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 000499 452 LHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQE 514 (1460)
Q Consensus 452 L~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~ 514 (1460)
|+.|+..++.|++.+..+.++.+-.+...+.+.+.+........-++.+++.+|..+|..++.
T Consensus 442 l~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~ 504 (1118)
T KOG1029|consen 442 LQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQK 504 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555444444444444444444433333333444444444444444443
|
|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
Probab=84.75 E-value=78 Score=36.03 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000499 343 RASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKE 422 (1460)
Q Consensus 343 Ra~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eeke 422 (1460)
.+...+........++.++..|+|.+.. .+..++..+..+-.+-++...-+..+++.=..|+....
T Consensus 56 ~i~e~~~~~~~~~~~i~~~~~erdq~~~--------------dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ 121 (207)
T PF05010_consen 56 MIEEKQKQKELSEAEIQKLLKERDQAYA--------------DLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIE 121 (207)
T ss_pred HHHHHHhhHHhHHHHHHHHHhhHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3334444455555666666666665421 12222333333333444445555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHH
Q 000499 423 ALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQ 502 (1460)
Q Consensus 423 al~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~ 502 (1460)
.....+....++...|- .++.+.+++-+.||+....+. +.....|+..+.+..=+++++...|.+|-
T Consensus 122 ey~~~l~~~eqry~aLK---~hAeekL~~ANeei~~v~~~~----------~~e~~aLqa~lkk~e~~~~SLe~~LeQK~ 188 (207)
T PF05010_consen 122 EYEERLKKEEQRYQALK---AHAEEKLEKANEEIAQVRSKH----------QAELLALQASLKKEEMKVQSLEESLEQKT 188 (207)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544441 234444444444444443332 23456667777777777778888888998
Q ss_pred HHHHHHHHHHHH
Q 000499 503 KELGRLWTCIQE 514 (1460)
Q Consensus 503 ~Ei~~Lq~slq~ 514 (1460)
+|.+.|-.+--+
T Consensus 189 kEn~ELtkICDe 200 (207)
T PF05010_consen 189 KENEELTKICDE 200 (207)
T ss_pred HHHHHHHHHHHH
Confidence 888888777665
|
The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) []. |
| >PRK15422 septal ring assembly protein ZapB; Provisional | Back alignment and domain information |
|---|
Probab=84.65 E-value=6 Score=38.50 Aligned_cols=63 Identities=33% Similarity=0.402 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 000499 585 SAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVES 647 (1460)
Q Consensus 585 S~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~ 647 (1460)
+..+|.=||.||.-||+.+..|..|+..-...+.+|.++...++.+-..-..|..+|..-|..
T Consensus 16 AvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~~ 78 (79)
T PRK15422 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345788999999999999999999998778889999999999999999999999888776543
|
|
| >KOG1937 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.58 E-value=1.2e+02 Score=38.06 Aligned_cols=205 Identities=18% Similarity=0.196 Sum_probs=112.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhH----HHHHHHHHHHHHHHHHHHHH----------
Q 000499 246 LAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIA----EAEVQTLKEALARLETEREA---------- 311 (1460)
Q Consensus 246 i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~a----e~E~~sLk~~la~Lq~Ekea---------- 311 (1460)
...+++|..+-.+.|..--.+-+-++.++++.+ ..-.+-+|+..+ +.=+.-|+..++.++.....
T Consensus 243 neel~ae~kqh~v~~~ales~~sq~~e~~selE-~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~ 321 (521)
T KOG1937|consen 243 NEELQAEYKQHLVEYKALESKRSQFEEQNSELE-KLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQ 321 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367888888888888888888887777777777 445555554422 22334444444433322111
Q ss_pred -------HHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 000499 312 -------NIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALED 384 (1460)
Q Consensus 312 -------~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~lqyqQcLE~IS~LE~ 384 (1460)
-|.--..|+++=+.==..|-..+.+.....+++.+-+.....|+.++.++- +|+...-|-|
T Consensus 322 pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp--~dv~rk~ytq---------- 389 (521)
T KOG1937|consen 322 PLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLP--DDVQRKVYTQ---------- 389 (521)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCC--chhHHHHHHH----------
Confidence 111122333322211145555666777777888888888888888887773 2333322333
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 385 KLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEA-----------------LALQYQQCLEAISILEHKLARAEE 447 (1460)
Q Consensus 385 ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekea-----------------l~l~~qq~~~kI~~LE~els~sQE 447 (1460)
.|.....|++++...|-++-.+..+|++++..+.+-.+. ..-+.-.++..|-.--.++++.=.
T Consensus 390 rikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~ 469 (521)
T KOG1937|consen 390 RIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIR 469 (521)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334556666666667777777787775544433322 111122345555555556666555
Q ss_pred HHHHHHHHHHhHHhhh
Q 000499 448 EAQRLHSELDNGFAKL 463 (1460)
Q Consensus 448 Ev~RL~~Ei~~~~~kL 463 (1460)
+-+++..++-.+..++
T Consensus 470 ~tg~~~revrdlE~qI 485 (521)
T KOG1937|consen 470 ETGALKREVRDLESQI 485 (521)
T ss_pred HcchHHHHHHHHHHHH
Confidence 6666666654444443
|
|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
Probab=84.50 E-value=1.4e+02 Score=38.81 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 588 SIKNLQDEILSLRETIGKLEAEVE 611 (1460)
Q Consensus 588 sIk~LQdEi~~LkE~~~kLe~Ev~ 611 (1460)
.|..+++++..+.....+++.+.+
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~ 445 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIE 445 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666555554
|
This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. |
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=84.49 E-value=1.8e+02 Score=40.00 Aligned_cols=80 Identities=24% Similarity=0.269 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHhHHHHhhHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000499 436 SILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEE 515 (1460)
Q Consensus 436 ~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~~~~LE~~~q~L~sE~e~L~ekl~~~~qeL~eK~~Ei~~Lq~slq~E 515 (1460)
...+.+.....+.++.|..+++.....|+++.+........+..|..+.+.+..++....+++...+.++..++..+..+
T Consensus 437 ~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~ 516 (1041)
T KOG0243|consen 437 TQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEE 516 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777788888888888888888777767777888889999998888888888888888888888886654
|
|
| >PRK10929 putative mechanosensitive channel protein; Provisional | Back alignment and domain information |
|---|
Probab=84.41 E-value=1.9e+02 Score=40.27 Aligned_cols=53 Identities=6% Similarity=0.088 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 000499 601 ETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPE 653 (1460)
Q Consensus 601 E~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e 653 (1460)
+.+.+|=.++..+...-|.+.++....+.-.+.+..-...+.++++.++.++-
T Consensus 265 ~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~ 317 (1109)
T PRK10929 265 KINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNA 317 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 44555555555566777889999999999999999999999999999987654
|
|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
Probab=84.34 E-value=1.4e+02 Score=38.76 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHH
Q 000499 261 RQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARL 305 (1460)
Q Consensus 261 ~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~L 305 (1460)
.....++..++.++...+.+...+.+.....+.++..+...+..+
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666555555555444444444444444444333
|
This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=83.83 E-value=1.3e+02 Score=38.38 Aligned_cols=34 Identities=9% Similarity=0.243 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhh
Q 000499 256 GLLQYRQSLERLSNLESEVSHAREDSKGLSEQAS 289 (1460)
Q Consensus 256 ~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~ 289 (1460)
.+-.|.....+|..+.+++...+.+...+..+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld 192 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLD 192 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5667888888888888888877766544444433
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases | Back alignment and domain information |
|---|
Probab=83.67 E-value=1.1e+02 Score=36.85 Aligned_cols=66 Identities=21% Similarity=0.286 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHH
Q 000499 404 ESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469 (1460)
Q Consensus 404 e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~kL~~lE~~ 469 (1460)
+..+..+...+...+.........+..+.++|..|...+..+..+..+|..+++....+|..+..=
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~L 285 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKL 285 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Confidence 555555666666666666677777777777788888888878878888888877777777766543
|
The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A. |
| >KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.54 E-value=23 Score=44.43 Aligned_cols=137 Identities=24% Similarity=0.288 Sum_probs=89.4
Q ss_pred cchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhHHHHHHHHHHHHHHHHHhh
Q 000499 653 ENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEK 732 (1460)
Q Consensus 653 e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~mekLlEkns~LE~SLSdan~ELegLReK~K~LEesc~sL~~eK 732 (1460)
+.++..+|.+.++|..|.-.|...+.|-...-++=+. =+..+.+-|-|+|+.+-. +.
T Consensus 162 EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~------~y~~~~KelrdtN~q~~s-------~~---------- 218 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQ------LYGDCVKELRDTNTQARS-------GQ---------- 218 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHH------HHHHHHHHHHHHHHHHHH-------HH----------
Confidence 4456667777777777777777666665554433222 133455666666644322 21
Q ss_pred hhhhhhHHHHHhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhHHHH
Q 000499 733 STLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLVSQLDIA 812 (1460)
Q Consensus 733 S~L~sEK~~LvSQLq~~~~~l~~L~Ekns~LE~slSd~n~ElE~lr~K~k~lEes~~~l~~e~s~l~~Ek~~L~sQl~~~ 812 (1460)
-.|+..+.-+...-|.++.|.+.+-|++.+..-++...+++-.-+++.++-+--+.
T Consensus 219 -----------eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~------------- 274 (596)
T KOG4360|consen 219 -----------EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLT------------- 274 (596)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------------
Confidence 12344455566667888889999999999999999999999999888877665444
Q ss_pred HHHHHHHHHHHHHHhhhhcchHHHH
Q 000499 813 RKGLKDLEKSYAELEGRYLGLEEEK 837 (1460)
Q Consensus 813 ~~~l~~lek~~~ele~k~~~lq~Ek 837 (1460)
.+++-++++|+++......++.|.
T Consensus 275 -aE~~EleDkyAE~m~~~~EaeeEL 298 (596)
T KOG4360|consen 275 -AELEELEDKYAECMQMLHEAEEEL 298 (596)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666665
|
|
| >PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription | Back alignment and domain information |
|---|
Probab=82.96 E-value=84 Score=35.06 Aligned_cols=123 Identities=20% Similarity=0.265 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000499 290 IAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAV 369 (1460)
Q Consensus 290 ~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~~ 369 (1460)
+++.=...|.+.|..++.....+-..+-.+.-.--.++.++..+...+.....+|..|-. ...|+.
T Consensus 20 ~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~-------------~g~edL- 85 (221)
T PF04012_consen 20 KAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALA-------------AGREDL- 85 (221)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------cCCHHH-
Confidence 333333555555554444444443333333333444555555555555555555533311 111111
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000499 370 VKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQY 428 (1460)
Q Consensus 370 lqyqQcLE~IS~LE~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~ 428 (1460)
...|+..+..++..+..++..+..+...++.++..+..++.+|..++...+.+..+.
T Consensus 86 --Ar~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 86 --AREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233555555555555555555555555555555555555555555555555544444
|
The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator []. |
| >PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
Probab=82.90 E-value=15 Score=43.65 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000499 353 TLKLDLARIEAEKEAAVVKYEECSRMIS 380 (1460)
Q Consensus 353 ~LKqel~~l~~EKEa~~lqyqQcLE~IS 380 (1460)
.|+..+.....|.+. |..|+..+.
T Consensus 13 ~l~~~~~~~~~E~~~----Y~~fL~~l~ 36 (314)
T PF04111_consen 13 QLDKQLEQAEKERDT----YQEFLKKLE 36 (314)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 344445555555553 777776665
|
In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A. |
| >PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells | Back alignment and domain information |
|---|
Probab=82.83 E-value=98 Score=35.70 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=45.0
Q ss_pred HhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 000499 383 EDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAK 462 (1460)
Q Consensus 383 E~ki~~aee~~~~ln~~~e~~e~ev~~Lk~~l~~L~eekeal~l~~qq~~~kI~~LE~els~sQEEv~RL~~Ei~~~~~k 462 (1460)
...+..+...++.........+..+..+.+.+..|..+.+.+..+......+...+..........+.-|...|......
T Consensus 23 ~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~ 102 (264)
T PF06008_consen 23 LSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDN 102 (264)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444433333334455566666666666666666666666666666666555555555555555444444444
Q ss_pred hhhH
Q 000499 463 LKGA 466 (1460)
Q Consensus 463 L~~l 466 (1460)
+.++
T Consensus 103 i~~l 106 (264)
T PF06008_consen 103 IQEL 106 (264)
T ss_pred HHHH
Confidence 4433
|
Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex |
| >COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.38 E-value=1.6e+02 Score=37.81 Aligned_cols=91 Identities=21% Similarity=0.259 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhcCCCccchhhhHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhHhhhhHH
Q 000499 637 KHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIM-EKLLEKNAVLENSLSDLNVELEGVR 715 (1460)
Q Consensus 637 k~~~l~e~l~~l~~~~e~~~~~VkeLQ~~n~~LkE~~s~~~~EK~~L~~kLq~m-ekLlEkns~LE~SLSdan~ELegLR 715 (1460)
+.+.++.+++.+-++.+.+...|+.-++-...|.. ......+++.|.+||=.- ..-.--|+-+-.+|+.|-.=.+.-+
T Consensus 455 ~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~-~t~e~ve~a~LaE~lIQY~NRYRs~~~~v~~~l~eAe~lF~~~~ 533 (570)
T COG4477 455 EIQDLMKELSEVPINMEAVSALVDIATEDMNTLED-ETEEVVENAVLAEQLIQYGNRYRSRNAEVAKSLNEAERLFENAF 533 (570)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 45788999999999999999999988877766654 455667899999988663 4556678888888887765444333
Q ss_pred HHHHHHHHHHHHH
Q 000499 716 DKVKALEEVCQNL 728 (1460)
Q Consensus 716 eK~K~LEesc~sL 728 (1460)
.=-.++|...+.|
T Consensus 534 dY~~s~eia~qaL 546 (570)
T COG4477 534 DYDASFEIASQAL 546 (570)
T ss_pred chhHHHHHHHHHH
Confidence 3344455544443
|
|
| >COG3074 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.41 E-value=9.3 Score=36.49 Aligned_cols=62 Identities=34% Similarity=0.393 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000499 584 SSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQV 645 (1460)
Q Consensus 584 SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l 645 (1460)
.+..+|.=||.||.-|||.+..|.+|+.---..+++|.++..++|.+-..-..++.++.--|
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34558999999999999999999999986677889999999999988888888877776544
|
|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
Probab=81.08 E-value=2.5e+02 Score=39.14 Aligned_cols=94 Identities=18% Similarity=0.237 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhHHHHHHHHHHH
Q 000499 265 ERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRA 344 (1460)
Q Consensus 265 ek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~LlqykqClE~Is~LE~~~s~aqeeak~lneRa 344 (1460)
.++|++|..|.+.+.-+. .. +.+...+..+-.++..|..+.-++...+-+=..+||+.-+....|..+...|..-+
T Consensus 1201 s~f~~me~kl~~ir~il~---~~-svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~ 1276 (1758)
T KOG0994|consen 1201 SRFLDMEEKLEEIRAILS---AP-SVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREF 1276 (1758)
T ss_pred hHHHHHHHHHHHHHHHhc---CC-CccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHH
Confidence 467888888877665432 22 12222333444444444444455555666667778877777777777777776666
Q ss_pred HHHHHHHHHHHHHHhhHH
Q 000499 345 SKAEIEAQTLKLDLARIE 362 (1460)
Q Consensus 345 ~~AE~E~~~LKqel~~l~ 362 (1460)
.....-++.|+..+.++.
T Consensus 1277 ~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1277 NGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 666666666666666653
|
|
| >PF15294 Leu_zip: Leucine zipper | Back alignment and domain information |
|---|
Probab=80.72 E-value=1.3e+02 Score=35.74 Aligned_cols=52 Identities=29% Similarity=0.442 Sum_probs=43.9
Q ss_pred CcccccccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHH
Q 000499 578 LNELNLSSA-----ESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKE 629 (1460)
Q Consensus 578 L~e~n~SS~-----~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lke 629 (1460)
|.|.+-+.. -.|..||.||.+||+....++...+.+.+||..|+..+..+..
T Consensus 118 L~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 118 LEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556655522 2799999999999999999999999999999999999966666
|
|
| >PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription | Back alignment and domain information |
|---|
Probab=80.43 E-value=1e+02 Score=34.38 Aligned_cols=120 Identities=20% Similarity=0.309 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000499 240 LTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQC 319 (1460)
Q Consensus 240 ~~Lkk~i~~LqtEKE~~~~qY~~slek~~~LE~~is~aQ~~~~~L~era~~ae~E~~sLk~~la~Lq~Ekea~LlqykqC 319 (1460)
..|.-.|-.++..-.-+.-+.-........++.++..+...+..+..+|..| +..=.+.|| -.++.....|
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A---l~~g~edLA------r~al~~k~~~ 96 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA---LAAGREDLA------REALQRKADL 96 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHH------HHHHHHHHHH
Confidence 4444455555555445555555555555556666666666555555554333 222233343 3455677788
Q ss_pred HHHHHhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000499 320 LDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAA 368 (1460)
Q Consensus 320 lE~Is~LE~~~s~aqeeak~lneRa~~AE~E~~~LKqel~~l~~EKEa~ 368 (1460)
.+.+..++..+..+...+..+...+.+++.++..++.....+..-...+
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a 145 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA 145 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888777777666665544443
|
The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator []. |
| >PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] | Back alignment and domain information |
|---|
Probab=80.43 E-value=73 Score=37.64 Aligned_cols=146 Identities=23% Similarity=0.276 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHh
Q 000499 496 QELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEEN 575 (1460)
Q Consensus 496 qeL~eK~~Ei~~Lq~slq~E~~k~~EaE~aL~~Lq~LhSqSQeE~~~L~~Ei~~~~~~L~~le~~k~~L~eev~~l~EEn 575 (1460)
++-.++|=-++.|...+++..+++-+.-+.... |..|.+.+.....+++.+++.|.-++..-
T Consensus 32 KE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~--------------LkREnq~l~e~c~~lek~rqKlshdlq~K---- 93 (307)
T PF10481_consen 32 KERQQRQFQLESLEAALQKQKQKVEEEKNEYSA--------------LKRENQSLMESCENLEKTRQKLSHDLQVK---- 93 (307)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhh--------------hhhhhhhHHHHHHHHHHHHHHhhHHHhhh----
Confidence 455566677788888888877777665555544 77788888888888888888887665543
Q ss_pred ccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCccch
Q 000499 576 KGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENF 655 (1460)
Q Consensus 576 ~~L~e~n~SS~~sIk~LQdEi~~LkE~~~kLe~Ev~~~~~ek~aLq~el~~lkee~~~Ln~k~~~l~e~l~~l~~~~e~~ 655 (1460)
|. .|--|--.+++-|...++|+ +++...|.+++....-+.+.--.|...+..-.+|
T Consensus 94 ----e~------qv~~lEgQl~s~Kkqie~Le--------------qelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f 149 (307)
T PF10481_consen 94 ----ES------QVNFLEGQLNSCKKQIEKLE--------------QELKRCKSELERSQQAASSGDVSLNPCSTPQKSF 149 (307)
T ss_pred ----HH------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhccCCccccccCCchhhc
Confidence 11 22334444556666555544 4555566666655444432222222222222222
Q ss_pred -----------hhhHHHHHHHhhhhHHHHHHhHHHHHHH
Q 000499 656 -----------GLSVKELQDENSKLKEVYERDRCEKVAL 683 (1460)
Q Consensus 656 -----------~~~VkeLQ~~n~~LkE~~s~~~~EK~~L 683 (1460)
.....+|++...+=-++-.++.+|-.+|
T Consensus 150 ~~p~tp~q~~~~sk~e~L~ekynkeveerkrle~e~k~l 188 (307)
T PF10481_consen 150 ATPLTPSQYYSDSKYEELQEKYNKEVEERKRLEAEVKAL 188 (307)
T ss_pred cCCCChhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3555655555554444444444444444
|
Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 8e-21
Identities = 56/354 (15%), Positives = 128/354 (36%), Gaps = 8/354 (2%)
Query: 248 KLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLET 307
+ L L +++ E E+ E+ + E+ AEAE++ L++ +L
Sbjct: 833 NVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCE 892
Query: 308 EREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEA 367
E+ + Q + + E+ R A EL + + E + + +++AEK+
Sbjct: 893 EKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK 952
Query: 368 AVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQ 427
+ + + E + + + K E ++ ++ KLT+E++ L +
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
Query: 428 YQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESM 487
++ E K + + S + +LK E+ LE+ + L E +
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072
Query: 488 VQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAEL 547
+++ ++ E + +L + +Q R + + + + + L +L
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132
Query: 548 QNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRE 601
++ + + L EE+E +K E L Q E+
Sbjct: 1133 ESEKAARNKAEKQKRDLSEELEALKTE--------LEDTLDTTATQQELRGSDY 1178
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 1e-20
Identities = 51/346 (14%), Positives = 128/346 (36%), Gaps = 1/346 (0%)
Query: 302 LARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARI 361
+ L K++ E+ + + + +R KAE E + L+ ++
Sbjct: 832 MNVXHWPWMXLFFXIXPLL-KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQL 890
Query: 362 EAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEK 421
EK K + + + + E+ + + + ++ + E+ +E ++ +L EK
Sbjct: 891 CEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEK 950
Query: 422 EALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLH 481
+ + Q E + E + + E ++ + E++ L + + L
Sbjct: 951 KKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010
Query: 482 SELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELR 541
+ + + + ++ K + + I E +R + E + Q L+ + + + E
Sbjct: 1011 ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESS 1070
Query: 542 SLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRE 601
L ++ + ++ + +EE++ + ++ + I+ L+ I L+E
Sbjct: 1071 DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE 1130
Query: 602 TIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVES 647
+ +A Q+ L +E+ LK EL + E S
Sbjct: 1131 DLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 3e-20
Identities = 68/336 (20%), Positives = 134/336 (39%), Gaps = 14/336 (4%)
Query: 247 AKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLE 306
+ E E +A + +++ ER E+E+ + L E+ ++ + ++Q E A E
Sbjct: 853 TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE 912
Query: 307 TEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKE 366
R + Q+ + L ME I E + +L K + + L+ L EA ++
Sbjct: 913 EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972
Query: 367 AAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALAL 426
++ I +ED +L E+ + ++ K E V L L + E+ + L
Sbjct: 973 KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032
Query: 427 QYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELES 486
+ IS LE +L + E+ Q L LE + LH ++
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRK--------------LEGESSDLHEQIAE 1078
Query: 487 MVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAE 546
+ ++ +L +K++EL +++E + A + L+ S Q++L S A
Sbjct: 1079 LQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAA 1138
Query: 547 LQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELN 582
+ +D+ ++L+ E+E + EL
Sbjct: 1139 RNKAEKQKRDLSEELEALKTELEDTLDTTATQQELR 1174
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 1e-19
Identities = 74/351 (21%), Positives = 142/351 (40%), Gaps = 24/351 (6%)
Query: 383 EDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKL 442
E+++ +E+ +R + KAE+E++ L+Q +L EEK L + Q E + E
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915
Query: 443 ARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQ 502
R + Q L L E + E +Q L +E + M Q+M ++L E++
Sbjct: 916 VRLAAKKQELE-------EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968
Query: 503 KELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQ 562
+L Q E+ V A+ + ++ +D+ L E + + + D+ T
Sbjct: 969 AARQKL----QLEK---VTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021
Query: 563 SLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQ 622
+E+ + + + + +K + L + KLE E +Q LQ
Sbjct: 1022 EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081
Query: 623 EIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVA 682
+I LK +L + ++ QA + ++E + N ++EL+ S L+E E ++ +
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAAR-- 1139
Query: 683 LLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKS 733
K ++ L L L ELE D +E+ + +
Sbjct: 1140 --------NKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 93.0 bits (231), Expect = 4e-19
Identities = 66/333 (19%), Positives = 136/333 (40%), Gaps = 14/333 (4%)
Query: 441 KLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTE 500
K+ R EEE Q EL + + AE + LE+ + L E + +K+ ++++ E
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910
Query: 501 KQKELGRLWT-------CIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQI 553
++ RL + E R E E Q LQ + Q ++ L +L+
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
Query: 554 LKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELR 613
+ + + +++K++++ + + N + K L++ + L + + E + +
Sbjct: 971 RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030
Query: 614 VDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVY 673
+N + I L+ L + K Q + + + + + ELQ + ++LK
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090
Query: 674 ERDRCEKVALLEKLE----IMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNL- 728
+ E A L +LE L+K LE+ +SDL +LE + E+ ++L
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLS 1150
Query: 729 --LAEKSTLVAEKNSLFSQLQDVNENLKKLSDE 759
L T + + + Q++ + K D+
Sbjct: 1151 EELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 1e-18
Identities = 63/355 (17%), Positives = 137/355 (38%), Gaps = 25/355 (7%)
Query: 496 QELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILK 555
++T +++E+ +Q + R +AE + L+ H+Q +E L +LQ ++
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909
Query: 556 DMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVD 615
+ L + ++++E + ++ I E +L+AE
Sbjct: 910 EAEEMRVRLAAKKQELEEI--------------LHEMEARIEEEEERSQQLQAE------ 949
Query: 616 QRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYER 675
+ +QQ++ L+E+L E Q + + + + + ++D+N+KL + +
Sbjct: 950 -KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKL 1008
Query: 676 DRCEKVALLEKL----EIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAE 731
L L E + L + E+ +S+L V L+ + LE++ + L E
Sbjct: 1009 LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068
Query: 732 KSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLL 791
S L + L +Q+ ++ L K +E + L D ++ K + LE L
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128
Query: 792 DNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEE 846
+ R Q + L+ L+ + +E + S + ++
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 2e-18
Identities = 49/340 (14%), Positives = 130/340 (38%), Gaps = 7/340 (2%)
Query: 356 LDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALG 415
L + R E E +A + + E +L E+ ++ + + + +++ +
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909
Query: 416 KLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLER 475
+ E + LA + Q+ E + +E ++ EE +Q+L A+ K +++ L LE
Sbjct: 910 EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQ-------AEKKKMQQQMLDLEE 962
Query: 476 SNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQ 535
+ + + + + + ++ + + ++ + + E L ++
Sbjct: 963 QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022
Query: 536 SQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDE 595
+++ ++L ++ ++ R + ++ +++++ + L + E I LQ +
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082
Query: 596 ILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENF 655
I L+ + K E E++ + + + +++ EL + E +ES
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142
Query: 656 GLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLE 695
++L +E LK E E K +
Sbjct: 1143 EKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 3e-17
Identities = 67/372 (18%), Positives = 129/372 (34%), Gaps = 40/372 (10%)
Query: 169 VTSRRGLKQLNDFLGSGEKVTHGKFGEGRARKGLNFHDAEENEQLQHNESYDIKARVPSE 228
+ R +++ ++ + K L E+ E ++ ++ +E
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKEL-----EQKHTQLCEEKNLLQEKLQAE 904
Query: 229 SERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQA 288
+E +AE + L +LE + R+ E + + K + +Q
Sbjct: 905 TELYAEAEEMRVRLAAKKQELEE-------ILHEMEARIEEEEERSQQLQAEKKKMQQQM 957
Query: 289 SIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAE 348
E +++ + A +L+ E+ K+ ME +I E +L+ E
Sbjct: 958 LDLEEQLEEEEAARQKLQLEK-------VTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010
Query: 349 IEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVE 408
L +LA E + + + MIS LE +L K E +
Sbjct: 1011 ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRL--------------KKEEKSRQ 1056
Query: 409 RLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEE 468
L++ KL E L Q + I+ L+ +LA+ EEE Q + L++ ++ A +
Sbjct: 1057 ELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALK 1116
Query: 469 KCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQT 528
K LE L +LES ++ + +EL + + + T
Sbjct: 1117 KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL-------EALKTELEDTLDTTAT 1169
Query: 529 LQHLHSQSQDEL 540
Q L +
Sbjct: 1170 QQELRGSDYKDD 1181
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 2e-14
Identities = 47/274 (17%), Positives = 95/274 (34%)
Query: 205 HDAEENEQLQHNESYDIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSL 264
+AEE + +++ + R+ + E L+ K++ + Q +
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968
Query: 265 ERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLS 324
L+ E A K + + I E + L + LE + +K
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 325 NMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALED 384
N+ K ++ E+ EL R K E Q L+ ++E E + E I+ L+
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088
Query: 385 KLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLAR 444
+L EE+ + + S+ + + +L L + A + E +
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148
Query: 445 AEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQ 478
EE + L +EL++ +E + +
Sbjct: 1149 LSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 3e-14
Identities = 61/348 (17%), Positives = 135/348 (38%), Gaps = 20/348 (5%)
Query: 605 KLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQD 664
+ E E++ + ++ ++ + EL EL +KH + E+ + ++LQ
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL----------QEKLQA 903
Query: 665 ENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEV 724
E E E E EI+ ++ + E L E + ++ ++ LEE
Sbjct: 904 ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963
Query: 725 CQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSL 784
+ A + L EK + +++ + +++ + D+NN L V L
Sbjct: 964 LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023
Query: 785 EDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLE---EEKESTL 841
E+ L K+ + L +L K ++LEK +LEG L E ++ +
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083
Query: 842 QKVEELQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQ 901
+++ + E Q + ++ ++ +I L+ +E+L+ +
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELES----HISDLQEDLES---EK 1136
Query: 902 IEIFITQKYIQDLKEKNFSLLFECQKLLQESSLSEKLIHKLENENCEQ 949
+K +DL E+ +L E + L ++ ++L ++ ++
Sbjct: 1137 AARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 1e-13
Identities = 51/341 (14%), Positives = 130/341 (38%), Gaps = 15/341 (4%)
Query: 924 ECQKLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEILEIDADHGCE 983
E Q +E +++ K E E E +++ L ++ +L+ +L E+ +A+
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA-EAEEMRV 916
Query: 984 TKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLAT 1043
+ Q + +L ++ +++E + + + ++ + L L + + + L
Sbjct: 917 RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQL 976
Query: 1044 ERNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSE 1103
E+ + + + ++++ + KLT+ + L V++ L E L
Sbjct: 977 EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD---LTTNLAEEEEKAKNLTKL 1033
Query: 1104 LQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFKDV 1163
+ + + ++ E+KS +L++ K LE E+ + + K
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQ----ELEKIKRKLEGESSDLHEQIAELQAQIAELKAQ 1089
Query: 1164 ISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQSLEKSENELVAI 1223
+++K ++ L+ N +K+R + + D+Q K + K+E +
Sbjct: 1090 LAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ---- 1145
Query: 1224 GCVRDQLNCEIANGKDLLSRKEKELFVAEQILCSLQNERTE 1264
+ L+ E+ K L +++ S + +
Sbjct: 1146 ---KRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 1e-12
Identities = 62/397 (15%), Positives = 128/397 (32%), Gaps = 54/397 (13%)
Query: 687 LEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQL 746
L L K E + + EL+ +++ + E + L + + L EKN L +L
Sbjct: 842 LFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901
Query: 747 QDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCLLLDNEKSCLITERVNLV 806
Q E + + L + + + A+ + E+ L EK +
Sbjct: 902 QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM-------- 953
Query: 807 SQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQLSE 866
++ + DLE+ E E L+ EK + K+++++ + + Q+ +
Sbjct: 954 ------QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK--- 1004
Query: 867 TRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQ 926
+K EE + E ++ ++L +
Sbjct: 1005 -------------------ERKLLEERVSDLTTNLAE---EEEKAKNLTKLKNKHESMIS 1042
Query: 927 KLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEILEIDADHGCETKM 986
+L EK +LE + + E L +QI L+ Q+ +L
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL---------------K 1087
Query: 987 EQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERN 1046
Q + L +L++ AL++ ++ S L L K ++
Sbjct: 1088 AQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKR 1147
Query: 1047 ALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAER 1083
L+EE + E+ + ++
Sbjct: 1148 DLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 3e-12
Identities = 58/358 (16%), Positives = 133/358 (37%), Gaps = 39/358 (10%)
Query: 985 KMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATE 1044
K E+ Q + + +LKE++ + E+ + + + L + + LA +
Sbjct: 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAK 921
Query: 1045 RNALAEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSEL 1104
+ L E + + +L ++++ ++ + L+ ++ +L
Sbjct: 922 KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD-------LEEQLEEEEAARQKL 974
Query: 1105 QGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFKDVI 1164
Q + + + K+ D+ + + L +E+ LEE +
Sbjct: 975 QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER---------------------V 1013
Query: 1165 SEKLVKIADLSENLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQSLEKSENELVAIG 1224
S+ +A+ E L + N+ E + + +L+ + L++ K E E +
Sbjct: 1014 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLH 1073
Query: 1225 CVRDQLNCEIANGKDLLSRKEKELFVAEQILCSLQNERTELHMKVEDLTCKYDEAKIIQE 1284
+L +IA K L++KE+EL A L +++ K+ +L + +
Sbjct: 1074 EQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ---- 1129
Query: 1285 DQGKQIRKLTEDYDCQIKETRCIHELNMKLEAELGKLLEELEGTRYREESLYHELEKE 1342
+ + + K+ R +L+ +LE L LE+ T ++ L K+
Sbjct: 1130 ---EDLESEKAARNKAEKQKR---DLSEELE-ALKTELEDTLDTTATQQELRGSDYKD 1180
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 1e-11
Identities = 50/333 (15%), Positives = 129/333 (38%)
Query: 1077 RVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEEK 1136
++V + + E++ + + + L+ ++ ++ +EK L +K+ E
Sbjct: 849 LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908
Query: 1137 HSLEEENCVMFVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKD 1196
EE + + + H + I E+ + L K+ +LEE++ ++
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968
Query: 1197 GKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAEQILC 1256
+ +Q++ ++K E++++ + ++L E ++ +S L E+
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 1257 SLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLTEDYDCQIKETRCIHELNMKLEA 1316
+L + + + +L + + + +++ K RKL + ++ + +L+A
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088
Query: 1317 ELGKLLEELEGTRYREESLYHELEKERKHAGLWETQATELFSELQISSVCEVLRNEKAHE 1376
+L K EEL+ R E + K E+ ++L +L+ ++ +
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148
Query: 1377 LSRACENLEDRSNSNDIEINQLKEKANALECEN 1409
LS E L+ +E + ++
Sbjct: 1149 LSEELEALKTELEDTLDTTATQQELRGSDYKDD 1181
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 91.1 bits (225), Expect = 2e-18
Identities = 109/766 (14%), Positives = 217/766 (28%), Gaps = 238/766 (31%)
Query: 36 MDVKVKQM----IKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATG 91
MD + + ++ D+F + V++ ++ + E DH
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKD---------VQDMPKSILSKEE-IDHIIM 56
Query: 92 A-------------LRQAHRTMAEAFPNQVPFALGDD-----SPAGTEADPRTPELAPAR 133
+ L M + F V L + SP TE R P +
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKF---VEEVLRINYKFLMSPIKTE--QRQPSMMTRM 111
Query: 134 AIFYPDELQNDSLGLSSSHLLALKKNGAFTDDSDTVTS-RRGLKQLNDFLGSGEKVT-HG 191
I D L ND+ + ++ L+ R+ L +L + V G
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQP----------YLKLRQALLELR----PAKNVLIDG 157
Query: 192 KFGEGR---ARKGLNFHDAEENEQLQHNESYDIKARVPSESERMGKAEMEI--LTLKNAL 246
G G+ A SY ++ ++ +I L LKN
Sbjct: 158 VLGSGKTWVALDVCL--------------SYKVQCKMDF----------KIFWLNLKN-- 191
Query: 247 AKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLE 306
+ LE L L ++ + S+ +S + + +++ L RL
Sbjct: 192 -----CNSPETV-----LEMLQKLLYQIDP---NWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 307 TEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEIEAQTLKLDLARIEAEKE 366
+ Y+ CL L V+ + A +L
Sbjct: 239 KS-----KPYENCLLVL------------LNVQ-----NAKAWNA----FNL-------- 264
Query: 367 AAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALAL 426
C K+L + + + ++ + + L LT + E +L
Sbjct: 265 -------SC---------KILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPD-EVKSL 306
Query: 427 QYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELES 486
L+ + L R E + + A+ + + H +
Sbjct: 307 ----LLKYLDCRPQDLPR---EVLTTNPRRLSIIAESI-RDGLA----TWDNWKHVNCDK 354
Query: 487 MVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAF--------QTLQHL-HSQSQ 537
+ + S L E R F + + F L + +
Sbjct: 355 LTTIIESSLNVLEPA------------EYRKMF-DRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 538 DELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEIL 597
++ + +L + + K KE + + L ++N
Sbjct: 402 SDVMVVVNKLHKYSLVEKQ--------------PKESTISIPSIYLELKVKLENEY---- 443
Query: 598 SLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKK--------HQAMVEQVESVS 649
+L +I VD N + + + + + H +E E ++
Sbjct: 444 ALHRSI----------VDHYNIPKT--FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 650 LNPENFGLSVKELQDENSKLKEVYERDRCEK--VALLEKLEIMEKLLEKN-AVLENSLSD 706
L F L + L+ K++ + L++L+ + + N E ++
Sbjct: 492 LFRMVF-LDFRFLE---QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 707 L-----NVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQ 747
+ +E + K L + L+AE + E Q+Q
Sbjct: 548 ILDFLPKIEENLICSKYTDL--LRIALMAEDEAIFEEA---HKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 86.8 bits (214), Expect = 4e-17
Identities = 93/682 (13%), Positives = 213/682 (31%), Gaps = 198/682 (29%)
Query: 498 LTEKQKELG--RLWTCI---QEERL-RFVEAETAFQTLQHLHSQSQDELRSLAAELQNRA 551
+ K G RL+ + QEE + +FVE + + L + ++
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVE------------EVLRINYKFLMSPIKTEQ 102
Query: 552 QILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRET--------- 602
+ + E+ +++ +N+ + N+S + L+ +L LR
Sbjct: 103 ---RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 603 -IGK--LEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSV 659
GK + +V CL ++ M ++ F L++
Sbjct: 160 GSGKTWVALDV---------------CLSYKV------QCKMDFKI---------FWLNL 189
Query: 660 KELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVK 719
K C + LE+++KLL + ++ + + + ++ ++
Sbjct: 190 K----------------NCNSPETV--LEMLQKLLYQ---IDPNWTSRSDHSSNIKLRIH 228
Query: 720 ALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRA 779
+++ + LL K +N L L +V N N+ F+ +
Sbjct: 229 SIQAELRRLLKSKPY----ENCLLV-LLNVQ---------NAKAWNA-FNLS-------- 265
Query: 780 KSKSLEDSCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKES 839
C +L L T + L A L+ L +E +S
Sbjct: 266 --------CKIL------LTTRFKQVTDFLSAATTTHISLDHHSMTLT------PDEVKS 305
Query: 840 TLQKVEELQFS-LDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKAL 898
L K + + L E S I+ +GL ++ L
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRL----------SIIAESIRDGLATWDNWKHVNCDKL 355
Query: 899 DAQIEIFITQKYIQDLKEKNFSLLFECQKLLQESS-LSEKLIHKLENENCEQQEEM---- 953
IE + L+ + +F+ + S+ + L+ + + + +
Sbjct: 356 TTIIESSLNV-----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 954 ---RSLVD-QIKVLRVQLYQLLEILEIDADHGCETKMEQDQS-HQTLLDQVTGKLKEMQI 1008
SLV+ Q K + + + LE+ + K+E + + H++++D
Sbjct: 411 LHKYSLVEKQPKESTISIPSIY--LEL------KVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 1009 SVLKALEQN--------HQVVIENSILVALLGQL---------KLEAENLATERNA---- 1047
++ H IE+ + L + K+ ++ A +
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 1048 LAEEFRIQSEQFVVLQREFPKL-TEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQG 1106
++ + ++ +L I + L E ++ ++ L
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFL------PKIEENLICSKYTDL--------- 567
Query: 1107 AQQSLQDQNCKVLDEKKSLMKK 1128
+ +L ++ + +E +++
Sbjct: 568 LRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 84.5 bits (208), Expect = 2e-16
Identities = 105/692 (15%), Positives = 226/692 (32%), Gaps = 151/692 (21%)
Query: 630 ELNELNKKHQAMVEQVESVSLNPENF--GLSVKELQDENSKLKEVYERDRCEKV-----A 682
E E +++ ++ E + F K++QD K + ++ + + A
Sbjct: 10 ETGEHQYQYKDILSVFE------DAFVDNFDCKDVQDM---PKSILSKEEIDHIIMSKDA 60
Query: 683 LLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSL 742
+ L + LL K E + VE E +R K L + + S +
Sbjct: 61 VSGTLRLFWTLLSKQ---EEMVQKF-VE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 743 FSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSC-LLLDNE----KSC 797
+L + N+ K + V+ L LR L + +L+D K+
Sbjct: 116 RDRLYNDNQVFAKYN------VSRL----QPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 798 LITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQ 857
+ + + D + + L E+ L+ +++L + +D
Sbjct: 166 VALDVCL-----SYKVQCKMDFKIFWLNL-----KNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 858 HASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKE- 916
+ + R+ +++++ L + K YE L L +Q+ K
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKS-----KPYENCLL-VLLN----------VQNAKAW 259
Query: 917 KNFSLLFECQKLL--QESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEIL 974
F+ C+ LL + +++ L + + +V + LL+ L
Sbjct: 260 NAFN--LSCKILLTTRFKQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSL----LLKYL 311
Query: 975 EIDADHGCETKMEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQL 1034
+ QD + L ++S++ ++ +N
Sbjct: 312 DCRP---------QDLPREVL------TTNPRRLSIIAESIRDGLATWDNW--------K 348
Query: 1035 KLEAENLATER----NAL-AEEFRIQSEQFVVLQREFPKLTEINEELRVEVAERNHTEEV 1089
+ + L T N L E+R ++ V FP I L + + + +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV----FPPSAHIPTIL-LSLIWFDVIKSD 403
Query: 1090 LKTEMRSLH-MLLSELQGAQQ-----SLQDQNCKVLDEKKSLMKKVLDLQEEKHSLEEEN 1143
+ + LH L E Q + S+ + L+ + +L + ++D + + ++
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 1144 CVM------FVETISQSNLSHIFKDVISEKLVKIADLSENLDKLGCINNELEEKVRLKDG 1197
+ F I H+ E++ + + LE+K+R
Sbjct: 464 LIPPYLDQYFYSHIGH----HLKNIEHPERMTLFRMVFLDF-------RFLEQKIRHDST 512
Query: 1198 KLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEIANGKDLLSRKEKELFVAE----- 1252
+ L+Q L+ + + ++L I D L + E+ L ++
Sbjct: 513 AWNASGSILNTLQQ-LKFYKPYICDNDPKYERLVNAI---LDFLPKIEENLICSKYTDLL 568
Query: 1253 QILCSLQNERTELHMKVEDLTCKYDEA-KIIQ 1283
+I +L E + ++EA K +Q
Sbjct: 569 RI--ALMAEDEAI----------FEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 9e-13
Identities = 74/484 (15%), Positives = 144/484 (29%), Gaps = 96/484 (19%)
Query: 992 HQTLLDQVTGKLKEMQISVLKALEQNHQVVIEN----SILVALLGQL-KLEAENLATERN 1046
H +D TG E Q L ++N + L K E +++ ++
Sbjct: 3 HHHHMDFETG---EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 1047 ALAEEFRI----------QSEQFV--VLQREFPKLTEINEELRVEVAERNHTEEVLKTEM 1094
A++ R+ ++FV VL+ + L ++ E + + + +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS---PIKTEQRQPSMMTRMYIEQ- 115
Query: 1095 RSLHMLLSELQGAQQSLQDQNCKVLDEKKSLMKKVLDLQEE------------KHSLEEE 1142
L Q N L L + +L+L+ K + +
Sbjct: 116 ------RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 1143 NCVMFVETISQSNLSHIF------KDVISEKLVKIADLSENLDKLGCINNELEEKVRLKD 1196
V + IF + L + L +D ++ ++L+
Sbjct: 170 --VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR- 226
Query: 1197 GKLEDVQMQ-NSLLKQSLEKSENELVAIGCVRDQ-------LNCEI------ANGKDLLS 1242
+ +Q + LLK + EN L+ + V++ L+C+I D LS
Sbjct: 227 --IHSIQAELRRLLKS--KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 1243 RKEKELFVAEQILCSLQNERTE------LHMKVEDLTCKYDEAKIIQEDQGKQIRKLTED 1296
+ +L + + L + +DL E + I + D
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---REVLTTNPRRLSIIAESIRD 339
Query: 1297 YDCQIKETRCIHELNMKLEAELGKLLEELEGTRYREESLYHELEKERKHAG--------L 1348
+ H KL + L LE YR+ ++ L A +
Sbjct: 340 GLATWDNWK--HVNCDKLTTIIESSLNVLEPAEYRK--MFDRLSVFPPSAHIPTILLSLI 395
Query: 1349 W---ETQATELF-SELQISSVCEVLRNEKAHEL-SRACENLEDRSNSNDIEINQLKEKAN 1403
W + ++L S+ E E + S E N + + + N
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-RSIVDHYN 454
Query: 1404 ALEC 1407
+
Sbjct: 455 IPKT 458
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 6e-09
Identities = 67/432 (15%), Positives = 140/432 (32%), Gaps = 127/432 (29%)
Query: 1084 NHTEEVLKTEMRSLHM----LLSELQGAQQSLQDQNCK-VLDEKKSLMKK--VLDLQEEK 1136
+H + E +LS + + + +CK V D KS++ K + + K
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFE--DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 1137 HSLEE------------ENCV-MFVETISQSN---LSHIFKDVISEKLVKIADLSENLDK 1180
++ E V FVE + + N L K + + E D+
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 1181 LGCINNELEEK---VRLKDGKLEDVQMQNSLLKQSLEKSENELVAI----GCVRDQLNCE 1233
L +N++ K RL+ ++++ +LL+ L ++N V I G
Sbjct: 119 L-YNDNQVFAKYNVSRLQ----PYLKLRQALLE--LRPAKN--VLIDGVLGS-------- 161
Query: 1234 IANGKDLLSRKEKELFVAEQILCSLQNERTELHM--KVEDLT---CKYDEAKIIQEDQGK 1288
GK + + + + + M K+ L C E +
Sbjct: 162 ---GKTWV--------ALD----VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM----- 201
Query: 1289 QIRKLTEDYDCQIKETRCIHELNMKLEAELGKLLEELEGTRYREESLYHEL-----EKER 1343
+ +L +++ + + R S+ EL K
Sbjct: 202 ------------------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 1344 KHAGL-----WETQATELFS-ELQI------SSVCEVLRNEKAHELSRACENLEDRSNSN 1391
++ L +A F+ +I V + L +S L+ S +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-----LDHHSMT- 297
Query: 1392 DIEINQLKEK-ANALECENGGLKAHLAASIPAVISL-----KDSIRSLENHTLLHKADND 1445
+ +++K L+C L + + P +S+ +D + + +N + D
Sbjct: 298 -LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN---WKHVNCD 353
Query: 1446 EVKVMSIVQVPI 1457
K+ +I++ +
Sbjct: 354 --KLTTIIESSL 363
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-12
Identities = 41/273 (15%), Positives = 96/273 (35%), Gaps = 25/273 (9%)
Query: 448 EAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGR 507
++ + + + L+ L+ + L ++QK + L
Sbjct: 830 VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889
Query: 508 LWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEE 567
+ R + E +L+ A ++ ++ + + LQ +
Sbjct: 890 IVYLQCCYRRMMAKRE-------------LKKLKIEARSVERYKKLHIGLENKIMQLQRK 936
Query: 568 VEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCL 627
+++ +E K L E + + +++ S E + E E + ++ +LQ+EI L
Sbjct: 937 IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996
Query: 628 KEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKL 687
++EL++ + + + E + E + S+LKE + EK L ++
Sbjct: 997 RKELHQTQTEKKTIEEWADKYK----------HETEQLVSELKEQNTLLKTEKEELNRRI 1046
Query: 688 EIMEKLLEK--NAVLENSLSDLNVELEGVRDKV 718
K + + L L ++L R +
Sbjct: 1047 HDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 4e-11
Identities = 46/268 (17%), Positives = 92/268 (34%), Gaps = 30/268 (11%)
Query: 374 ECSRMISALEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLE 433
+ + L L+ ++ + + V + K + LQ
Sbjct: 841 ATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ------ 894
Query: 434 AISILEHKLARAEEEAQRLHSELDNGFAKLKGA-EEKCLLLERSNQTLHSELESMVQKMG 492
+A+ E + ++ + + KL E K + L+R + E +S+++KM
Sbjct: 895 --CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN 952
Query: 493 SQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQ 552
+ + + ++L ERLR E E + + Q+E+ L EL
Sbjct: 953 NLEITYSTETEKLRSD-----VERLRMSEEEA--KNATNRVLSLQEEIAKLRKELHQTQT 1005
Query: 553 ILKDMGTRNQSLQEEVEK-VKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVE 611
K + + E E+ V E + L E + + D+ + ET
Sbjct: 1006 EKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITET--------- 1056
Query: 612 LRVDQRNALQQEIYCLKEELNELNKKHQ 639
L +E L+ +LN+ ++Q
Sbjct: 1057 ----MEKKLVEETKQLELDLNDERLRYQ 1080
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-10
Identities = 34/229 (14%), Positives = 79/229 (34%), Gaps = 14/229 (6%)
Query: 222 KARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNLESEVSHAREDS 281
K+ + + R A + A+ L+ + ++ L++L V ++
Sbjct: 866 KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMA--KRELKKLKIEARSVERYKKLH 923
Query: 282 KGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELS 341
GL + + ++ + L + Y +KL + + + +E +A +
Sbjct: 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT 983
Query: 342 DRASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVAD 401
+R + E L+ +L + + EK+ E + E + + +
Sbjct: 984 NRVLSLQEEIAKLRKELHQTQTEKKTIE---EWADKYKHETEQLV-------SELKEQNT 1033
Query: 402 KAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQ 450
++E E L + + + KE ++ +E LE L Q
Sbjct: 1034 LLKTEKEELNRRI--HDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 6e-10
Identities = 35/265 (13%), Positives = 88/265 (33%), Gaps = 23/265 (8%)
Query: 314 RQYQQCLDKLSNMEKNISRAEADAVELSDRASKA--EIEAQTLKLDLARIEAEKEAAVVK 371
++YQ D ++ + I+ A+V
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892
Query: 372 YEECSRMISA--LEDKLLHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQ 429
+ C R + A KL +R K+ E+++ +L++ + + +E ++L +
Sbjct: 893 LQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN 952
Query: 430 QCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQ 489
S KL E + E N ++ +E+ L + +E +++ +
Sbjct: 953 NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012
Query: 490 KMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQN 549
E + EL +E+ ++ E + L+ + D+ + + ++
Sbjct: 1013 WADKYKHETEQLVSEL--------KEQNTLLKTE-----KEELNRRIHDQAKEITETME- 1058
Query: 550 RAQILKDMGTRNQSLQEEVEKVKEE 574
K + + L+ ++ +
Sbjct: 1059 -----KKLVEETKQLELDLNDERLR 1078
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 3e-09
Identities = 35/229 (15%), Positives = 81/229 (35%), Gaps = 11/229 (4%)
Query: 290 IAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNISRAEADAVELSDRASKAEI 349
+ L ++ +I + L+ + + + ++ R A+
Sbjct: 845 LQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR 904
Query: 350 EAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKLLHSEEDSKRINKVADKAESEVER 409
E + LK++ +E K+ + E I L+ K+ ++ K + + + E
Sbjct: 905 ELKKLKIEARSVERYKKLHI-GLEN---KIMQLQRKIDEQNKEYKSLLEKMNNLEITYST 960
Query: 410 LKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEEK 469
+ L E + + +++ +EE +L EL + K EE
Sbjct: 961 ETEKLRSDVERLRMSEEEAKN-------ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEW 1013
Query: 470 CLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLR 518
+ + L SEL+ + ++ +EL + + + T E++L
Sbjct: 1014 ADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 6e-09
Identities = 38/250 (15%), Positives = 93/250 (37%), Gaps = 15/250 (6%)
Query: 618 NALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDR 677
++ L+ L +++ + E S+ + + LK +
Sbjct: 836 QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC 895
Query: 678 CEKVALLEKL--------EIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQNLL 729
C + + ++ +E+ + + LEN + L +++ + K+L E NL
Sbjct: 896 CYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE 955
Query: 730 AEKSTLVAEKNSLFSQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLEDSCL 789
ST + S +L+ E K ++ L + E+ + + K++E+
Sbjct: 956 ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015
Query: 790 LLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQK-VEELQ 848
+E L++E + L + ++L + + + E E L + ++L+
Sbjct: 1016 KYKHETEQLVSELKEQNTLL---KTEKEELNRRIHDQAKE---ITETMEKKLVEETKQLE 1069
Query: 849 FSLDAEKQQH 858
L+ E+ ++
Sbjct: 1070 LDLNDERLRY 1079
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 6e-08
Identities = 24/169 (14%), Positives = 60/169 (35%), Gaps = 3/169 (1%)
Query: 207 AEENEQLQHNESYDIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLER 266
A E+ + ++ ++ ++ + E +L + LE + R +ER
Sbjct: 913 ARSVERYK-KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVER 971
Query: 267 LSNLESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNM 326
L E E +A L E+ + E+ + +E + + +Q + +L
Sbjct: 972 LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031
Query: 327 EKNISRAEADAVELSDRASKAEIEA--QTLKLDLARIEAEKEAAVVKYE 373
+ + + +K E + L + ++E + ++Y+
Sbjct: 1032 NTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 3e-07
Identities = 40/279 (14%), Positives = 85/279 (30%), Gaps = 21/279 (7%)
Query: 1059 FVVLQREFP--KLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSELQGAQQSLQDQNC 1116
+++Q+ + + + +R + ML Q +
Sbjct: 819 AIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHV-RGW 877
Query: 1117 KVLDEKKSLMKKVLDLQEEKHSL--EEENCVMFVETISQSNLSHIFKDVISEKLVKIADL 1174
+K ++ LQ + + E + +E S K + KI L
Sbjct: 878 LARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERY----KKLHIGLENKIMQL 933
Query: 1175 SENLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQSLEKSENELVAIGCVRDQLNCEI 1234
+D+ L EK+ + + + L SE E L EI
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993
Query: 1235 ANGKDLLSRKEKELFVAEQILCSLQNERTELHMKVEDLTCKYDEAKIIQEDQGKQIRKLT 1294
A + L + + E +++ + + E L + E + + + +++ +
Sbjct: 994 AKLRKELHQTQTEKK-------TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRI 1046
Query: 1295 EDYDCQIKETRCIHELNMKLEAELGKLLEELEGTRYREE 1333
D + + KL E +L +L R R +
Sbjct: 1047 HD-----QAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 39/239 (16%), Positives = 91/239 (38%), Gaps = 29/239 (12%)
Query: 986 MEQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATER 1045
+ H++++ Q K ++ + +V ++ + +L+ +
Sbjct: 859 QMMLREHKSIIIQ---KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARS 915
Query: 1046 NALAEEFRIQSE-QFVVLQREFPKLTEINEELRVEVAERNHTEEVLKTEMRSLHMLLSEL 1104
++ I E + + LQR K+ E N+E + + + N+ E TE L + L
Sbjct: 916 VERYKKLHIGLENKIMQLQR---KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL 972
Query: 1105 QGAQQSLQDQNCKVL---DEKKSLMKKVLDLQEEKHSLEEENCVMFVETISQSNLSHIFK 1161
+ +++ ++ +VL +E L K++ Q EK ++EE
Sbjct: 973 RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA-----------------D 1015
Query: 1162 DVISEKLVKIADLSENLDKLGCINNELEEKVRLKDGKLEDVQMQNSLLKQSLEKSENEL 1220
E +++L E L EL ++ + ++ + + L + ++ E +L
Sbjct: 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKK--LVEETKQLELDL 1072
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 4e-05
Identities = 30/237 (12%), Positives = 80/237 (33%), Gaps = 8/237 (3%)
Query: 668 KLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGVRDKVKALEEVCQN 727
+++ + L + + L E +++ + +KA+ +
Sbjct: 837 CMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCC 896
Query: 728 LLAEKSTLVAEKNSLF-SQLQDVNENLKKLSDENNFLVNSLFDANAEVEGLRAKSKSLED 786
+ +K + ++ + L ++ L + + N E + L K +LE
Sbjct: 897 YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI 956
Query: 787 SCLLLDNEKSCLITERVNLVSQLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEE 846
S + + V +L ++ + K+ L+ L +E T + +
Sbjct: 957 -------TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009
Query: 847 LQFSLDAEKQQHASFVQLSETRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIE 903
++ D K + V + + ++++ L + K E ++K L + +
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETK 1066
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 44/249 (17%), Positives = 94/249 (37%), Gaps = 6/249 (2%)
Query: 808 QLDIARKGLKDLEKSYAELEGRYLGLEEEKESTLQKVEELQFSLDAEKQQHASFVQL-SE 866
+ A L+ L + Y + L E K +QK + + + V L
Sbjct: 837 CMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCC 896
Query: 867 TRLAGMESQISFLQEEGLCRKKAYEEELDKALDAQIEIFITQKYIQDLKEKNFSLLFECQ 926
R + ++ L+ E R ++L L+ +I Q+ I + ++ SLL +
Sbjct: 897 YRRMMAKRELKKLKIEA--RSVERYKKLHIGLENKIMQL--QRKIDEQNKEYKSLLEKMN 952
Query: 927 KLLQESSLSEKLIHKLENENCEQQEEMRSLVDQIKVLRVQLYQLLEILEIDADHGCETKM 986
L S + + +EE ++ +++ L+ ++ +L + L +T
Sbjct: 953 NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH-QTQTEKKTIE 1011
Query: 987 EQDQSHQTLLDQVTGKLKEMQISVLKALEQNHQVVIENSILVALLGQLKLEAENLATERN 1046
E ++ +Q+ +LKE + E+ ++ + + + + + KL E E +
Sbjct: 1012 EWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELD 1071
Query: 1047 ALAEEFRIQ 1055
E R Q
Sbjct: 1072 LNDERLRYQ 1080
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 1e-06
Identities = 32/182 (17%), Positives = 62/182 (34%), Gaps = 11/182 (6%)
Query: 586 AESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQV 645
E L++E L L + KL Q LQ + EL+ N++ ++Q+
Sbjct: 1909 NEKRDQLEEEQLHLNIGLKKLRDTEA----QVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964
Query: 646 ESVSLNPENFGLSVKELQ-------DENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNA 698
E +ELQ E + K D + E +E+L
Sbjct: 1965 VQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAAN 2024
Query: 699 VLENSLSDLNVELEGVRDKVKALEEVCQNLLAEKSTLVAEKNSLFSQLQDVNENLKKLSD 758
L+ ++ + + + +E L+ E + E + + +++ L L+
Sbjct: 2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084
Query: 759 EN 760
E
Sbjct: 2085 ER 2086
|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 8e-06
Identities = 60/494 (12%), Positives = 159/494 (32%), Gaps = 20/494 (4%)
Query: 211 EQLQHNESYDIKARVPSESERMGKAEMEILTLKNALAKLEAEKEAGLLQYRQSLERLSNL 270
++ + P+ GK +I L + E E L + RL L
Sbjct: 312 INFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWL---LNEIRRLERL 368
Query: 271 ESEVSHAREDSKGLSEQASIAEAEVQTLKEALARLETEREANIRQYQQCLDKLSNMEKNI 330
+ R+ + EA +Q A L E +A +++++ L+ + +
Sbjct: 369 DHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLS-EIKALLKKHEAFESDLAAHQDRV 427
Query: 331 SRAEADAVELSDR----ASKAEIEAQTLKLDLARIEAEKEAAVVKYEECSRMISALEDKL 386
+ A A EL++ + Q + + A + E +++ ++
Sbjct: 428 EQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLY 487
Query: 387 LHSEEDSKRINKVADKAESEVERLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAE 446
L + + N + A +++ + EE + L ++Q + + +
Sbjct: 488 LEYAKRAAPFNNWMEGAMEDLQ--DTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAIL 545
Query: 447 EEAQRLHSELDNGFAKLKGAEEKCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELG 506
+ + + G + + + +V + E +Q++
Sbjct: 546 GIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNE 605
Query: 507 RLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQE 566
RL + +A +Q + + L+++ L+ + +
Sbjct: 606 RLR------KQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKP 659
Query: 567 EVEKVKEENKGLNELNLSSAESIKNLQDEILS----LRETIGKLEAEVELRVDQRNALQQ 622
++++++ +++ + E + + + I L TI + EVE ++ R+A
Sbjct: 660 KIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGI 719
Query: 623 EIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVA 682
+ E N + ++ + + E +++ + + +R V
Sbjct: 720 SQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVT 779
Query: 683 LLEKLEIMEKLLEK 696
++ M +
Sbjct: 780 FQAFIDFMSRETAD 793
|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 16/188 (8%)
Query: 513 QEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVK 572
+ +LR ++ E ++ +L Q A+ L+ R + + ++K
Sbjct: 833 LQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYN 892
Query: 573 EENKGLNEL--NLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEE 630
K L S D I +++ + LEA ++ + +
Sbjct: 893 RILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQ 952
Query: 631 LNELN-KKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEI 689
L ELN + E+ ++ + + +K E + +A LE+L+
Sbjct: 953 LTELNYNGVPELTERKDT-------------FFAQQWTGVKSSAETYKNTLLAELERLQK 999
Query: 690 MEKLLEKN 697
+E L +
Sbjct: 1000 IEDLHHHH 1007
|
| >2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 3e-05
Identities = 39/246 (15%), Positives = 88/246 (35%), Gaps = 2/246 (0%)
Query: 475 RSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHS 534
R + +++ M + + ++++L + + E + + +Q
Sbjct: 293 RRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEME 352
Query: 535 QSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQD 594
+SQ L + + L+ + + L++ +++ + L E A + L+D
Sbjct: 353 RSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLED 412
Query: 595 EILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPEN 654
EI + +E + +++ EVEL+ + LQ+E+ + + +E A +
Sbjct: 413 EIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERAD 472
Query: 655 FGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLNVELEGV 714
D S+ + + L E+N L N L L +L
Sbjct: 473 TDPDHDNASDAGSESGGGDLARGPDDLVDPV--ADRRTLAERNERLHNQLKALKQDLARS 530
Query: 715 RDKVKA 720
D+ K
Sbjct: 531 CDETKE 536
|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
Score = 47.3 bits (111), Expect = 4e-05
Identities = 40/320 (12%), Positives = 107/320 (33%), Gaps = 11/320 (3%)
Query: 409 RLKQALGKLTEEKEALALQYQQCLEAISILEHKLARAEEEAQRLHSELDNGFAKLKGAEE 468
++Q+L + K L + + + L + + + + + + +
Sbjct: 368 SVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKS 427
Query: 469 KCLLLERSNQTLHSELESMVQKMGSQSQELTEKQKELGRLWTCIQEERLRFVEAETAFQT 528
+ ++ + QT+ ++ + + + + L E + L + R +F E
Sbjct: 428 RSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQ---- 483
Query: 529 LQHLHSQSQDELRSLAAELQNRAQILKDMGTRNQSLQEEVEKVKEENKGLNELNLSSAES 588
+ S + + L AE N +L + ++E + ++ + L E
Sbjct: 484 ----RTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDT---IVLLCKPEPEL 536
Query: 589 IKNLQDEILSLRETIGKLEAEVELRVDQRNALQQEIYCLKEELNELNKKHQAMVEQVESV 648
+ + ++ ++ + + +++E L+ +L +N + +
Sbjct: 537 NAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQ 596
Query: 649 SLNPENFGLSVKELQDENSKLKEVYERDRCEKVALLEKLEIMEKLLEKNAVLENSLSDLN 708
LSV EL L + ++ LL+ +++ + K N +
Sbjct: 597 DGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLRE 656
Query: 709 VELEGVRDKVKALEEVCQNL 728
L+ + E+ NL
Sbjct: 657 EVLKNLATAYDNFVELVANL 676
|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 31/195 (15%), Positives = 62/195 (31%), Gaps = 24/195 (12%)
Query: 499 TEKQKELGRLWTCIQEERLRFVEAETAFQTLQHLHSQSQDELRSLAAELQNRAQILKDMG 558
+ + L + + L E ++ + L+ Q E + + Q + +L
Sbjct: 825 LQTKLRLIKREPFVAPAGLTPNEIDSTWSALE-KAEQEHAEALRIELKRQKKIAVLLQKY 883
Query: 559 TRNQSLQEEVEKVKEENKGLNELNLSSAESIKNLQDEILSLRETIGKLEAEVELRVDQRN 618
R E K G NE D I +++ + LEA
Sbjct: 884 NRILKKLENWATTKSVYLGSNET-----------GDSITAVQAKLKNLEAFDGECQSLEG 932
Query: 619 ALQQEIYCLKEELNELNKKHQAMVEQVESVSLNPENFGLSVKELQDENSKLKEVYERDRC 678
++ + +L ELN + + + + + +K E +
Sbjct: 933 QSNSDLLSILAQLTELNYNGVPELTERKD------------TFFAQQWTGVKSSAETYKN 980
Query: 679 EKVALLEKLEIMEKL 693
+A LE+L+ +E L
Sbjct: 981 TLLAELERLQKIEDL 995
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00