Citrus Sinensis ID: 000506
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1458 | 2.2.26 [Sep-21-2011] | |||||||
| Q7PC87 | 1453 | ABC transporter G family | yes | no | 0.989 | 0.992 | 0.712 | 0.0 | |
| Q7PC84 | 1454 | ABC transporter G family | no | no | 0.993 | 0.996 | 0.698 | 0.0 | |
| Q2PCF1 | 1461 | Pleiotropic drug resistan | N/A | no | 0.990 | 0.988 | 0.680 | 0.0 | |
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.978 | 0.994 | 0.614 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | no | no | 0.971 | 0.995 | 0.597 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | yes | no | 0.975 | 0.981 | 0.607 | 0.0 | |
| Q8GU86 | 1454 | Pleiotropic drug resistan | yes | no | 0.980 | 0.982 | 0.589 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | yes | no | 0.984 | 0.993 | 0.609 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.983 | 0.984 | 0.603 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.979 | 0.990 | 0.608 | 0.0 |
| >sp|Q7PC87|AB34G_ARATH ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2207 bits (5718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1037/1456 (71%), Positives = 1231/1456 (84%), Gaps = 14/1456 (0%)
Query: 9 DDIVRSLSMGSSAGNRS-----GRASSSFREVWKS-SSNAFSRSQRDDDDEEELRWAAIE 62
+D+VR++S S G+ S G AS SFR+V+ + + F RS R ++D+ ELRWAA+E
Sbjct: 6 EDLVRTMSGRGSLGSTSHRSLAGAASKSFRDVFAPPTDDVFGRSDRREEDDVELRWAALE 65
Query: 63 RLPTYDRLRRGMLSQLGDDGKVVRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLR 122
RLPTYDRLR+GML Q +GK+ +V+V L +++K L E ILK VEEDN+KFLR+LR
Sbjct: 66 RLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAPKEKKHLMEMILKFVEEDNEKFLRRLR 125
Query: 123 ERIDRVGIDIPKIEIRYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRK 182
ER DRVGI++PKIE+RYE+L+++G+V SRA+PTL N +N E++LG +LPSKKRK
Sbjct: 126 ERTDRVGIEVPKIEVRYENLSVEGDVRSASRALPTLFNVTLNTIESILGLFHLLPSKKRK 185
Query: 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP 242
I+ILKD+SG++KPSRMTLLLGPP +GKTTLL ALAGKLDD L+++G+I YCGHEF+EFVP
Sbjct: 186 IEILKDISGIIKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVP 245
Query: 243 QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAY 302
Q+TCAYISQ+DLHFGEMTVRE++DFSGRCLGVGTRY++L E+SRRE+EAGIKPDPEIDA+
Sbjct: 246 QKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKPDPEIDAF 305
Query: 303 MKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKV 362
MK+ A++GQ+TSL TDYVLKLLGLDICADT+VGD MRRG+SGGQ+KR+TTGEMLVGPA
Sbjct: 306 MKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEMLVGPATA 365
Query: 363 LLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIV 422
L MDEISTGLDSSTTFQICK+M+Q+VH+ ++T ++SLLQPAPE ++LFD+IILLSEGQIV
Sbjct: 366 LFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSEGQIV 425
Query: 423 YQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQG 482
YQG R+ VLEFFEYMGFKCP+RKG+ADFLQEVTSKKDQEQYW R++ PY Y+SV DF G
Sbjct: 426 YQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVSVHDFSSG 485
Query: 483 FSSFHVGQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYI 542
F+SFH GQQLA++ VPYDK++THPAALV KYGISN DLF+ACF REWLLMKRNSFVY+
Sbjct: 486 FNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMKRNSFVYV 545
Query: 543 FKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLP 602
FKT QITIMSLIA+TV+FRTEM VG V DG KFYGALFFSLINLMFNG+AELAFTV RLP
Sbjct: 546 FKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELAFTVMRLP 605
Query: 603 VFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFF 662
VFFKQRD LFYPPWA+ALP F+L+IPLS++ES IW+ LTYYTIGFAP+A+R FRQ LA+F
Sbjct: 606 VFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFFRQLLAYF 665
Query: 663 AVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPM 722
VN MALSLFRF+G++GRTEV+AN+ GT LL+VFVLGGF+I+KDDI ++ W YY SPM
Sbjct: 666 CVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTWCYYTSPM 725
Query: 723 MYGQNAIVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTI 782
MYGQ A+VINEFLDERW P +D +I+ TVG++LLKSRGFFT YW+WICIGAL GFT+
Sbjct: 726 MYGQTALVINEFLDERWGSPNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIGALLGFTV 785
Query: 783 LFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHG 842
LFN +I A+ +LNPLG +K T + E+G K K S GT + + + S T+ HG
Sbjct: 786 LFNFCYIIALMYLNPLGNSKATTVVEEGKDKHKGS-HSGTGGSVVELTS------TSSHG 838
Query: 843 PKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGV 902
PKKGMVLPFQPLSLAF++VNY VDMPAEMKAQG+E DRLQLLRDV G FRPGVLTAL+GV
Sbjct: 839 PKKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQGVEGDRLQLLRDVGGAFRPGVLTALVGV 898
Query: 903 SGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESL 962
SGAGKTTLMDVLAGRKTGGY EG I+ISGYPKNQATFARVSGYCEQNDIHSPHVTVYESL
Sbjct: 899 SGAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQATFARVSGYCEQNDIHSPHVTVYESL 958
Query: 963 LFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVEL 1022
++SAWLRLS+DID+KTR+MFV+EVM+LVEL+PL N++VGLPGVDGLSTEQRKRLTIAVEL
Sbjct: 959 IYSAWLRLSADIDTKTREMFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVEL 1018
Query: 1023 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082
VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDELLLMK
Sbjct: 1019 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMK 1078
Query: 1083 RGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFADI 1142
RGGQVIYAG LG SQKLVEYFEA+ GVP+I +GYNPATWML+++TP+ E+Q++VDFA I
Sbjct: 1079 RGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMESQMSVDFAQI 1138
Query: 1143 YVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNA 1202
+V SS+ +RN+ELIKELSTP PGS+DLYF T+Y+QPF Q KACFWK S WR PQYNA
Sbjct: 1139 FVNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQPFSTQTKACFWKMYWSNWRYPQYNA 1198
Query: 1203 LRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTER 1262
+RF +T+V+G+LFGL+FW G K +K+QDL N FGA+Y AV FLG+TNA +V V+ ER
Sbjct: 1199 IRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAVLFLGATNAATVQPAVAIER 1258
Query: 1263 TVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMV 1322
TVFYRE+AAGMYS + YA SQV +E++Y QT VY LILYSM+G+ W +FFWF Y +
Sbjct: 1259 TVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYYM 1318
Query: 1323 MMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSP 1382
+ F+ FTLYGMM+VALTP QI I FFLS WNLFSGFLIPR QIPIWWRWYYW SP
Sbjct: 1319 LTCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWASP 1378
Query: 1383 VAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAF 1442
VAWTLYG++TSQVGD + V I G M++K LLK+ FGF YDFLPVVAVV + W+L F
Sbjct: 1379 VAWTLYGIITSQVGDRDSIVHITG-VGDMSLKTLLKNGFGFDYDFLPVVAVVHIAWILIF 1437
Query: 1443 VFVFTLAITLINFQRR 1458
+F F I +NFQRR
Sbjct: 1438 LFAFAYGIKFLNFQRR 1453
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC84|AB39G_ARATH ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2179 bits (5647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1022/1463 (69%), Positives = 1231/1463 (84%), Gaps = 14/1463 (0%)
Query: 1 MALPITGGDDIVRSLSMGSSAGNRSGR----ASSSFREVWKSSSN-AFSRSQRDDDDEEE 55
MA + +D V +LS S + S R AS SFR+V+ ++ F RS+R ++D+ E
Sbjct: 1 MAAMLGRDEDPVGALSGRVSLASTSHRSLVGASKSFRDVFMPQTDEVFGRSERREEDDME 60
Query: 56 LRWAAIERLPTYDRLRRGMLSQLGDDGKVVRREVNVKKLGMQDRKQLRESILKLVEEDND 115
LRWAAIERLPT+DRLR+GML Q +GK+ ++++ +L +D+K L E IL VEEDN+
Sbjct: 61 LRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPKDKKHLMEMILSFVEEDNE 120
Query: 116 KFLRKLRERIDRVGIDIPKIEIRYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRI 175
KFLR LRER DRVGI++PKIE+RYE+++++G+V SRA+PTL N +N E++LG +
Sbjct: 121 KFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALPTLFNVTLNTLESILGFFHL 180
Query: 176 LPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGH 235
LPSK++KIQILKD+SG+VKPSRMTLLLGPP +GKTTLL ALAGKLDD L+++G+I YCGH
Sbjct: 181 LPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGH 240
Query: 236 EFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKP 295
EF+EFVPQ+TCAYISQ+DLHFGEMTVRE +DFSGRCLGVG+RY++++E+SRREKE GIKP
Sbjct: 241 EFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKP 300
Query: 296 DPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEM 355
DP+IDA+MK+ A++GQ+TSL TDYVLK+LGLDICAD + GD MRRG+SGGQKKR+TTGEM
Sbjct: 301 DPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEM 360
Query: 356 LVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415
LVGPA+ L MDEISTGLDSSTTFQICK+M+Q+VH+ ++T I+SLLQPAPE ++LFD+IIL
Sbjct: 361 LVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIIL 420
Query: 416 LSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYIS 475
LSEGQIVYQGPR+ VLEFFEY GF+CP+RKGVADFLQEVTSKKDQEQYW +++QPY Y+S
Sbjct: 421 LSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVS 480
Query: 476 VSDFVQGFSSFHVGQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMK 535
VSDF GFS+FH GQ+L ++ VPYDK++TH AALV KYGISN +LF+ACF REWLLMK
Sbjct: 481 VSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMK 540
Query: 536 RNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELA 595
RNSFVY+FKT QITIMSLI +TV+ RTEM VG V DG KFYGA+FFSLIN+MFNGLAELA
Sbjct: 541 RNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELA 600
Query: 596 FTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLF 655
FTV RLPVF+KQRD LFYPPWA+ALP ++L+IPLS++ES IW+ LTYYTIGFAP+A+R F
Sbjct: 601 FTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFF 660
Query: 656 RQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIW 715
RQ LA+F VN MALSLFRF+G+IGRTEV++N++GTFTLL+VF LGGF+IAKDDI P+M W
Sbjct: 661 RQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTW 720
Query: 716 GYYVSPMMYGQNAIVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIG 775
YY+SPMMYGQ AIV+NEFLDERWS P D +I+ TVG++LLKSRGFFT YW+WICI
Sbjct: 721 AYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIV 780
Query: 776 ALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKKASGQPGTEDTDMSVRSSSEN 835
AL GF++LFN+ +I A+ +LNPLG +K TV+EE DK+K + GTE + + + SSS
Sbjct: 781 ALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGEN--RGTEGSVVELNSSSNK 838
Query: 836 VGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGV 895
GPK+GMVLPFQPLSLAF++VNY VDMP+EMKAQG+E DRLQLLRDV G FRPG+
Sbjct: 839 ------GPKRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRLQLLRDVGGAFRPGI 892
Query: 896 LTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPH 955
LTAL+GVSGAGKTTLMDVLAGRKTGGY EG ISISGYPKNQ TFARVSGYCEQNDIHSPH
Sbjct: 893 LTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFARVSGYCEQNDIHSPH 952
Query: 956 VTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKR 1015
VTVYESL++SAWLRLS+DID KTR++FV+EVM+LVEL+PL N++VGLPGVDGLSTEQRKR
Sbjct: 953 VTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKR 1012
Query: 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1075
LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+F
Sbjct: 1013 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESF 1072
Query: 1076 DELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQL 1135
DELLLMKRGGQVIYAG LG SQKLVEYFEAV GVP+I +GYNPATWML+++TP+ E+Q+
Sbjct: 1073 DELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATWMLDVTTPSMESQM 1132
Query: 1136 NVDFADIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYW 1195
++DFA I+ SSLY+RN+ELIK+LSTP PGS D+YF T+Y+Q F Q KACFWKQ SYW
Sbjct: 1133 SLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQTKACFWKQYWSYW 1192
Query: 1196 RDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVM 1255
R PQYNA+RF +T+V+G+LFGLIFW G KT+ +QDL N FGA+Y AV FLG+ NA +V
Sbjct: 1193 RHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGALNAATVQ 1252
Query: 1256 SVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRF 1315
++ ERTVFYRE+AAGMYS + YA SQV +E++Y QT VY LILYSM+G W +F
Sbjct: 1253 PAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAKF 1312
Query: 1316 FWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWR 1375
WF Y ++ SF+ FTLYGMM++ALTP QI I FFLSLWNLFSGFLIPR QIPIWWR
Sbjct: 1313 LWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPRPQIPIWWR 1372
Query: 1376 WYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVK 1435
WYYW +PVAWTLYGL+TSQVGD + V I G + +K LLK+ FGF++DFLPVVAVV
Sbjct: 1373 WYYWATPVAWTLYGLITSQVGDKDSMVHISG-IGDIDLKTLLKEGFGFEHDFLPVVAVVH 1431
Query: 1436 LVWLLAFVFVFTLAITLINFQRR 1458
+ W+L F+FVF I +NFQRR
Sbjct: 1432 IAWILLFLFVFAYGIKFLNFQRR 1454
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2PCF1|PDR2_NICPL Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2095 bits (5427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 995/1462 (68%), Positives = 1207/1462 (82%), Gaps = 18/1462 (1%)
Query: 8 GDDIVRSLSMGSSAGNRSGRASSSFREVWKSSSNAFSRSQRD------DDDEEELRWAAI 61
GD++ R + S++ S R+S S REV+ SS+ F ++ +++E+EL+WAAI
Sbjct: 7 GDELTR---LRSNSRMSSWRSSQSIREVFGGSSDVFMKNYSTRWREMAEEEEKELKWAAI 63
Query: 62 ERLPTYDRLRRGMLSQLGDDGKVVRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKL 121
+RLPTY+RLR+GM+ ++ +G+VV EV++ KLG QD+K L ESILK+VE+DN++FLR+L
Sbjct: 64 DRLPTYNRLRKGMMKEVMSNGRVVHHEVDMTKLGNQDKKVLMESILKVVEDDNEQFLRRL 123
Query: 122 RERIDRVGIDIPKIEIRYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKR 181
R R DRVGI+IPKIE+R+++L++ G+ ++G+RA+PTL N+ +N E VLG + + PSKKR
Sbjct: 124 RNRTDRVGIEIPKIEVRFQNLSVGGDAYVGTRALPTLLNSTLNTIEAVLGLIHLSPSKKR 183
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV 241
++IL+DVSG+++PSRMTLLLGPPG+GKTT L ALAGK + DL++ GKI YCGHEF EFV
Sbjct: 184 VVKILEDVSGIIRPSRMTLLLGPPGSGKTTFLKALAGKSEKDLRVNGKITYCGHEFHEFV 243
Query: 242 PQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
PQRT AYISQ+DLH GEMTVRET+DF+GRCLGVGTRY++L E+SRREKEAGI PDP+IDA
Sbjct: 244 PQRTSAYISQHDLHHGEMTVRETLDFAGRCLGVGTRYDLLVELSRREKEAGIMPDPQIDA 303
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
+MKATA+ GQ+TSL TDYVLK+LGLDICAD MVGD MRRG+SGGQKKRVTTGEMLVGPAK
Sbjct: 304 FMKATAIDGQETSLITDYVLKILGLDICADIMVGDDMRRGISGGQKKRVTTGEMLVGPAK 363
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421
MDEIS GLDSSTT+QI K+M+QMVH+ +IT ++SLLQPAPE +DLFD++I+LSEGQI
Sbjct: 364 AFFMDEISKGLDSSTTYQIVKFMRQMVHINDITMVISLLQPAPETFDLFDDVIVLSEGQI 423
Query: 422 VYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQ 481
VYQGPRE VLEFFEYMGF+CP+RK +ADFL EVTSKKDQEQYWFRK +PY YISV +F +
Sbjct: 424 VYQGPRENVLEFFEYMGFRCPERKAIADFLLEVTSKKDQEQYWFRKSRPYVYISVPEFSE 483
Query: 482 GFSSFHVGQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVY 541
F+SF +G+Q+ +L +PYDK H AALVKNKYGIS+ +LF++CF REWLLMKR+SF+Y
Sbjct: 484 SFNSFQIGEQIIEELTIPYDKYSVHRAALVKNKYGISSWELFKSCFTREWLLMKRSSFLY 543
Query: 542 IFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRL 601
IFKT+QITIM+ IALTVF RT+M G V D AKF+GALFFSLIN+MFNG+ ELA TVFRL
Sbjct: 544 IFKTTQITIMATIALTVFLRTQMKAGTVKDSAKFWGALFFSLINVMFNGMQELAMTVFRL 603
Query: 602 PVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAF 661
PVFFKQR+ LFYP WA+ALPI+VL+IP+S++ESAIW+ LTYYTIGFAPAASR F+Q LAF
Sbjct: 604 PVFFKQRNSLFYPAWAFALPIWVLKIPISLVESAIWIILTYYTIGFAPAASRFFKQLLAF 663
Query: 662 FAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSP 721
V+ MALSLFRFI + GRT+VVANTLGTFTLL+VF+LGGF+++KDDI+ +MIWGYY+SP
Sbjct: 664 IGVHQMALSLFRFIAAAGRTQVVANTLGTFTLLMVFILGGFIVSKDDIQDWMIWGYYLSP 723
Query: 722 MMYGQNAIVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFT 781
MMYGQNAI INEFLD+RWS P + +PTVGK LL +RG FT WYWI IGALFGF+
Sbjct: 724 MMYGQNAIAINEFLDDRWSAPTNG---SQPTVGKTLLHARGLFTTESWYWISIGALFGFS 780
Query: 782 ILFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKKASGQPG-TEDTDMSVRSSSENVGTT- 839
+LFN+LFIAA+ FLNP+G K + E+GDK + + D M+ S N +
Sbjct: 781 LLFNVLFIAALTFLNPIGDTKAVKV-ENGDKNNRRPQETAIVGDIQMAPTRSQANTSSVI 839
Query: 840 ---GHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVL 896
+ +KGM+LPFQPLSLAF+HVNY VDMPAEMK QG+EE+RLQLLRD SG FRPG+L
Sbjct: 840 PFPNNESRKGMILPFQPLSLAFNHVNYYVDMPAEMKTQGVEEERLQLLRDASGAFRPGIL 899
Query: 897 TALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHV 956
TAL+GVSGAGKTTLMDVLAGRKTGGY EG I+ISGYPKNQ TFARVSGYCEQNDIHSP+V
Sbjct: 900 TALVGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKNQTTFARVSGYCEQNDIHSPYV 959
Query: 957 TVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRL 1016
TVYESLL+SAWLRL+SD+ ++TRKMFV+EVM+LVEL+ L NA+VGLPGVDGLSTEQRKRL
Sbjct: 960 TVYESLLYSAWLRLASDVKTETRKMFVEEVMELVELKLLRNALVGLPGVDGLSTEQRKRL 1019
Query: 1017 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1076
T AVELVANPSIIFMDEPTSGLDARAAAIVMRTVR TVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1020 TTAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRKTVDTGRTVVCTIHQPSIDIFEAFD 1079
Query: 1077 ELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLN 1136
ELLLMK GGQVIYAGPLG +S KLVEYFE +PGVP+I NPATWML++S+ + EAQL
Sbjct: 1080 ELLLMKIGGQVIYAGPLGHRSHKLVEYFETIPGVPKIRESDNPATWMLDVSSSSMEAQLV 1139
Query: 1137 VDFADIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWR 1196
VDFA++Y S+LYQRN+ LIKELSTPA S DLYFPTQYSQ F+ QCKACFWKQ SYWR
Sbjct: 1140 VDFAEVYANSNLYQRNQLLIKELSTPATCSKDLYFPTQYSQSFITQCKACFWKQHWSYWR 1199
Query: 1197 DPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMS 1256
+ QYNA+RF +T+++G+LFG+IFW+KG + +QQDL NL GA Y AV FLG+TNA++V S
Sbjct: 1200 NSQYNAIRFFMTVIIGILFGVIFWNKGNQIHRQQDLLNLLGATYAAVMFLGATNASAVQS 1259
Query: 1257 VVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFF 1316
VV+ ERTVFYRERAAGMYS L YAF+QV IE IYVA QT VY L+L+SM+G+ W A +FF
Sbjct: 1260 VVAIERTVFYRERAAGMYSELPYAFAQVAIETIYVAIQTFVYSLLLFSMIGYQWTAVKFF 1319
Query: 1317 WFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRW 1376
+F Y + M F F++YGMM+VALTP QI AI+ FFLS WNLFSGFLIPR IP+WWRW
Sbjct: 1320 YFYYFIFMCFTYFSMYGMMVVALTPGYQIAAIVMSFFLSFWNLFSGFLIPRPLIPVWWRW 1379
Query: 1377 YYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVKL 1436
YYW SPVAWT+YG+ SQVGD +E+ G T + V + LK+ G+ +DFL VV +
Sbjct: 1380 YYWASPVAWTIYGIFASQVGDRTDELELTGETEKIQVNEFLKEYLGYDHDFLLVVVFAHV 1439
Query: 1437 VWLLAFVFVFTLAITLINFQRR 1458
W+L F FVF I +N+Q+R
Sbjct: 1440 GWVLLFFFVFAYGIKFLNYQKR 1461
|
May be a general defense protein. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1861 bits (4821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 891/1450 (61%), Positives = 1109/1450 (76%), Gaps = 24/1450 (1%)
Query: 12 VRSLSMGSSAGNRSGRASSSFREVWKSSS-NAFSRSQRDDDDEEELRWAAIERLPTYDRL 70
+ +L S G+ G ++ +W+++ FSRS RD+DDEE L+WAA+E+LPT+DRL
Sbjct: 6 LSNLRGSSLRGSTRGSLRANSNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRL 65
Query: 71 RRGMLSQLGDDGKVVRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGI 130
R+G+L G G EV++ LG Q+RK L E ++K+ +EDN+KFL KL+ RIDRVGI
Sbjct: 66 RKGLL--FGSQGAAA--EVDINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGI 121
Query: 131 DIPKIEIRYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVS 190
D+P IE+RYEHLNI + ++GSR++PT N + N E +L SL IL S+KR++ ILKD+S
Sbjct: 122 DLPTIEVRYEHLNIDADAYVGSRSLPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDIS 181
Query: 191 GLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYIS 250
G++KP RMTLLLGPP +GKTTLL+ALAGKLD LK+TGK+ Y GHE EFVPQRT AYIS
Sbjct: 182 GIIKPCRMTLLLGPPSSGKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYIS 241
Query: 251 QNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAG 310
Q+DLH GEMTVRET++FS RC GVG+R+EMLAE+SRREK A IKPD +ID YMKA A G
Sbjct: 242 QHDLHIGEMTVRETLEFSARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEG 301
Query: 311 QKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEIST 370
Q+ ++ TDYVLK+LGLDICADTMVGD M RG+SGGQKKRVTTGEMLVGP+K L MDEIST
Sbjct: 302 QEANVVTDYVLKILGLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEIST 361
Query: 371 GLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKV 430
GLDSSTT+ I ++Q V +L+ T ++SLLQPAPE Y+LFD+IILLS+G IVYQGPR+ V
Sbjct: 362 GLDSSTTYSIVNSLRQSVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDV 421
Query: 431 LEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQ 490
LEFFE MGFKCP RKGVADFLQEVTSKKDQ+QYW ++++PYR+I+ +F + + SFHVG+
Sbjct: 422 LEFFESMGFKCPQRKGVADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGR 481
Query: 491 QLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITI 550
+L ++LA P+DK++ HPAAL KYGI +L + C RE LLMKRNSFVY+FK SQ+TI
Sbjct: 482 KLGDELATPFDKTKCHPAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTI 541
Query: 551 MSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDH 610
M+LI +T+FFRTEMP DG + GALFF +I +MFNG++ELA T+F+LPVF+KQRD
Sbjct: 542 MALITMTLFFRTEMPRDTTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDL 601
Query: 611 LFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALS 670
LF+P WAYA+P ++L+IP++++E +WV LTYY IGF P +R +Q+L VN MA
Sbjct: 602 LFFPSWAYAIPSWILKIPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASG 661
Query: 671 LFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIV 730
+FRFIG++GRT VA+T G+F LLL F LGGFV+++DD++ + IWGY++SPMMY N+I+
Sbjct: 662 MFRFIGAVGRTMGVASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSIL 721
Query: 731 INEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIA 790
+NEF ++W+ V P +E T+G ++KSRGFF YWYWI +GAL GFT++FN +
Sbjct: 722 VNEFDGKKWNHIV--PGGNE-TLGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSL 778
Query: 791 AIQFLNPLGKAKPTVIEEDGDKKK--KASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMV 848
A+ +LNP K + V+ EDG+ + + S Q + D S+ S N KKGMV
Sbjct: 779 ALAYLNPFDKPQ-AVLPEDGENAENGEVSSQITSTDGGDSISESQNN--------KKGMV 829
Query: 849 LPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKT 908
LPF+P S+ F V YSVDMP EMK QG EDRL LL+ VSG FRPGVLTALMGVSGAGKT
Sbjct: 830 LPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKT 889
Query: 909 TLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWL 968
TLMDVLAGRKTGGY +G+I ISGYPK Q TFAR+SGYCEQNDIHSP+VTVYESL++SAWL
Sbjct: 890 TLMDVLAGRKTGGYIDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWL 949
Query: 969 RLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSI 1028
RL D+D KTRKMFVDEVM+LVEL PL +A+VGLPGV+GLSTEQRKRLTIAVELVANPSI
Sbjct: 950 RLPQDVDEKTRKMFVDEVMELVELGPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1009
Query: 1029 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1088
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGGQ I
Sbjct: 1010 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1069
Query: 1089 YAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSSL 1148
Y GPLGR S L++YFE+ PGV +I GYNPATWMLE++ E L +DF ++Y S L
Sbjct: 1070 YVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDL 1129
Query: 1149 YQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVT 1208
Y+RN+ LI EL P PGS DL+F TQYSQ F QC AC WKQ SYWR+P Y A+RF T
Sbjct: 1130 YRRNKALISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFT 1189
Query: 1209 IVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRE 1268
+ L+FG +FWD G K K QDL N G++Y AV FLG NA+SV VV+ ERTVFYRE
Sbjct: 1190 TFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRE 1249
Query: 1269 RAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQ 1328
RAAGMYS + YAF QV IE+ Y+ Q+V Y +I+Y+M+GF W +FFW+L+++ + +
Sbjct: 1250 RAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLY 1309
Query: 1329 FTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLY 1388
FT YGMM VA+TP + +I++ FF +WNLFSGF+IPR ++P+WWRWYYW +PVAWTLY
Sbjct: 1310 FTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLY 1369
Query: 1389 GLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFTL 1448
GLV SQ GDI+ + + TV+Q L+ FGFK+DFL VVA V ++ F F F
Sbjct: 1370 GLVASQFGDIQTKL-----SDNETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAF 1424
Query: 1449 AITLINFQRR 1458
AI NFQRR
Sbjct: 1425 AIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1841 bits (4768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 861/1442 (59%), Positives = 1100/1442 (76%), Gaps = 26/1442 (1%)
Query: 22 GNRSGRASSSFRE---VWKSSS--NAFSRSQRDDDDEEELRWAAIERLPTYDRLRRGMLS 76
G +AS+S R VWK S FSRS R++DDEE LRWAA+E+LPT+DRLR+G+L+
Sbjct: 3 GTSFHQASNSMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKGILT 62
Query: 77 QLGDDGKVVRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIE 136
G + E++++KLG QD K+L E ++K+ +++++K L KL++RIDRVGID+P IE
Sbjct: 63 ASHAGGPI--NEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIE 120
Query: 137 IRYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPS 196
+R++HL ++ EVH+G RA+PT N + N A+ L +L ++P++K+K IL DVSG+VKP
Sbjct: 121 VRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPG 180
Query: 197 RMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHF 256
RM LLLGPP +GKTTLL+ALAGKLD +LK TG++ Y GH EFVPQRT AYI QND+H
Sbjct: 181 RMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHI 240
Query: 257 GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLA 316
GEMTVRET ++ R GVG+RY+ML E++RREKEA IKPDP+ID +MKA + AG+KT++
Sbjct: 241 GEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVM 300
Query: 317 TDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSST 376
TDY+LK+LGL++CADTMVGD M RG+SGGQKKRVTTGEMLVGP++ L MDEISTGLDSST
Sbjct: 301 TDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSST 360
Query: 377 TFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEY 436
T+QI ++ VH+ T ++SLLQPAPE ++LFD+IIL++EG+I+Y+GPR+ V+EFFE
Sbjct: 361 TYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFET 420
Query: 437 MGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDL 496
MGFKCP RKGVADFLQEVTSKKDQ QYW R+D+PYR+I V +F + F SFHVG+++ ++L
Sbjct: 421 MGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDEL 480
Query: 497 AVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIAL 556
A+P+DK+++HPAAL KYG+ +L + F RE+LLMKRNSFVY FK Q+ +M+ + +
Sbjct: 481 ALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTM 540
Query: 557 TVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPW 616
T+FFRTEM DG+ + GALFF L+ LMFNG++EL+ T+ +LPVF+KQRD LFYP W
Sbjct: 541 TLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAW 600
Query: 617 AYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIG 676
Y+LP ++L+IP+S +E+A+ +TYY IGF P RLF+QY+ +N MA +LF+ +
Sbjct: 601 VYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVA 660
Query: 677 SIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLD 736
++GR +VANT G F +L+ F LGG V+++DDI+ + IWGY++SP+MYGQNAI+ NEF
Sbjct: 661 ALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFG 720
Query: 737 ERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLN 796
WS+ V + T+G LKSRGF YWYWI GAL GF +LFN F A+ FLN
Sbjct: 721 HSWSRAVEN---SSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLN 777
Query: 797 PLGKAKPTVIEEDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSL 856
LGK + + EE P +++T++ + SE V G K+GMVLPF+P S+
Sbjct: 778 SLGKPQAVIAEE-----------PASDETELQ-SARSEGVVEAGANKKRGMVLPFEPHSI 825
Query: 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG 916
F +V YSVDMP EM QG +EDRL LL+ V+G FRPGVLTALMGVSGAGKTTLMDVLAG
Sbjct: 826 TFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAG 885
Query: 917 RKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDS 976
RKTGGY +G+I+ISGYPKNQ TFAR+SGYCEQ DIHSPHVTVYESL++SAWLRL ++D
Sbjct: 886 RKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDK 945
Query: 977 KTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036
RK+F++EVM+LVEL PL A+VGLPG GLSTEQRKRLTIAVELVANPSIIFMDEPTS
Sbjct: 946 NKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1005
Query: 1037 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQ 1096
GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG+ IY GPLG +
Sbjct: 1006 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHE 1065
Query: 1097 SQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSSLYQRNEELI 1156
S L+ YFE++ G+ +IT GYNPATWMLE+ST + EA L VDFA +Y S LY+RN+ELI
Sbjct: 1066 STHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELI 1125
Query: 1157 KELSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFG 1216
KELS PAPGS DLYFPTQYSQ FL QC A WKQ SYWR+P Y A+RF TI + L+FG
Sbjct: 1126 KELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFG 1185
Query: 1217 LIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYST 1276
+FWD G KTK +QDL N G++Y AV FLG NA SV VV+ ERTVFYRE+AAGMYS
Sbjct: 1186 TMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSA 1245
Query: 1277 LAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMI 1336
+ YAF+QV IE+ YV Q +VY LI+Y+M+GF W A +FFW+L+ + SF+ FT YGMM
Sbjct: 1246 MPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMA 1305
Query: 1337 VALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVG 1396
VA+TP I +++S F +WNLFSGFLIPR +P+WW WYYWL PVAWTLYGL+ SQ G
Sbjct: 1306 VAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFG 1365
Query: 1397 DIEGNVEIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFTLAITLINFQ 1456
DI P + + M+VKQ +++ +G++ FL VVA + +++ L F +F + I NFQ
Sbjct: 1366 DITE----PMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQ 1421
Query: 1457 RR 1458
+R
Sbjct: 1422 KR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1832 bits (4745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 882/1453 (60%), Positives = 1111/1453 (76%), Gaps = 30/1453 (2%)
Query: 27 RASSSFRE--VWKSSSNAFSRS----QRDDDDEEELRWAAIERLPTYDRLRRGMLSQLGD 80
R +S RE +W+S + FSRS Q +DDDEE LRWAA+ERLPTYDR+RRG+L+ +
Sbjct: 7 RMASLRREGSMWRSGGDVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSE 66
Query: 81 DGKV--VRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIR 138
DG + EV+V +LG ++ + L E +++ ++D+++FL KLRER+DRVGID P IE+R
Sbjct: 67 DGGAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVR 126
Query: 139 YEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRM 198
+E+L ++ +VH+G+R +PTL N+V N E + +L ILP+KK+ + +L DVSG++KP RM
Sbjct: 127 FENLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRM 186
Query: 199 TLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGE 258
TLLLGPPG+GKTTLL+ALAGKLD DLK++GK+ Y GH EFVP+RT AYISQ+DLH GE
Sbjct: 187 TLLLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGE 246
Query: 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATD 318
MTVRET+ FS RC GVGTRYEML E++RREK A IKPD +ID YMKA+A+ GQ++S+ TD
Sbjct: 247 MTVRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTD 306
Query: 319 YVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTF 378
Y+LK+LGLDICADT+VG++M RG+SGGQ+KRVTTGEMLVGPA+ L MDEISTGLDSSTT+
Sbjct: 307 YILKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTY 366
Query: 379 QICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMG 438
QI ++Q +H+L T ++SLLQPAPE Y+LFD+IILLS+GQ+VYQGPRE VLEFFE+MG
Sbjct: 367 QIVNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMG 426
Query: 439 FKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAV 498
F+CP RKGVADFLQEVTS+KDQ QYW R+D+PYR++ V F F SFHVG+ + N+L+
Sbjct: 427 FRCPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSE 486
Query: 499 PYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTV 558
P+D++R+HPAAL +KYG+S +L +A RE LLMKRN+F+YIFK +T+M+LI +T
Sbjct: 487 PFDRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTT 546
Query: 559 FFRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAY 618
FFRT M + G + GAL+F+L +MFNG AELA TV +LPVFFKQRD LF+P WAY
Sbjct: 547 FFRTSMR-HDRDYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAY 605
Query: 619 ALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSI 678
+P ++L+IP++ LE ++V +TYY IGF P+ SR F+QYL A+N M+ +LFRFI I
Sbjct: 606 TIPSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGI 665
Query: 679 GRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDER 738
GR VV++T G +LL LGGF++A+ D++ + IWGY++SP+ Y QNAI NEFL
Sbjct: 666 GRDMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHS 725
Query: 739 WSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPL 798
WS+ + + T+G +LKSRG FT WYWI +GAL G+T+LFN+L+ A+ L+P
Sbjct: 726 WSQILPGENV---TLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPF 782
Query: 799 GKAKPTVIEEDGDKKKKAS-------GQPGTEDTDMSVRSS---SENVGTTG---HGPKK 845
+ + + ED K+K A+ GQ T+ + S +N G +K
Sbjct: 783 TDSHAS-MSEDALKEKHANLTGEVVEGQKDTKSRKQELELSHIADQNSGINSADSSASRK 841
Query: 846 GMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGA 905
GMVLPF PLS++F+ V YSVDMP MKAQGI EDRL LL+ VSG FRPGVLTALMGVSGA
Sbjct: 842 GMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGA 901
Query: 906 GKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFS 965
GKTTLMDVLAGRKTGGY EGDI ISGYPK Q TFAR+SGYCEQNDIHSPHVTVYESL+FS
Sbjct: 902 GKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFS 961
Query: 966 AWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVAN 1025
AWLRL S++DS+ RKMF++EVMDLVEL L A+VGLPGV GLSTEQRKRLTIAVELVAN
Sbjct: 962 AWLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVAN 1021
Query: 1026 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085
PSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDEL LMKRGG
Sbjct: 1022 PSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1081
Query: 1086 QVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFADIYVR 1145
+ IY GP+G+ S KL+EYFE + GV RI +GYNPATWMLE+++ E L VDF++IY +
Sbjct: 1082 EEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQ 1141
Query: 1146 SSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRF 1205
S LYQRN+ELI+ELSTP PGS+DL FPTQYS+ F+ QC AC WKQ SYWR+P Y A+R
Sbjct: 1142 SELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRL 1201
Query: 1206 AVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVF 1265
TIV+ L+FG +FW+ G +TKKQQDL N G++Y AV ++G N+ SV VV ERTVF
Sbjct: 1202 LFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVF 1261
Query: 1266 YRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMS 1325
YRERAAGMYS YAF QV IEL Y+ QT++Y +++YSM+GF W +F W+L+ + +
Sbjct: 1262 YRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFT 1321
Query: 1326 FMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAW 1385
+ FT YGMM V LTP I AI+S F ++WNLFSG+LIPR +IP+WWRWY W+ PVAW
Sbjct: 1322 LLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAW 1381
Query: 1386 TLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFV 1445
TLYGLV SQ GDI+ +E T TV Q + D FGF ++FL VVAVV +V+ + F F+
Sbjct: 1382 TLYGLVASQFGDIQHVLE----GDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFL 1437
Query: 1446 FTLAITLINFQRR 1458
F+ AI NFQRR
Sbjct: 1438 FSFAIMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU86|PDR5_ORYSJ Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1821 bits (4716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 862/1462 (58%), Positives = 1114/1462 (76%), Gaps = 33/1462 (2%)
Query: 6 TGGDDIVRSLSMGSSAGNRSGRASSSFREVWKSSSNAFSRSQRD-DDDEEELRWAAIERL 64
+G + RSL G RS AS +RD DDEE LRWAA+E+L
Sbjct: 17 SGAASLARSLRDGDDPFRRSAAAS-----------------RRDAGDDEENLRWAALEKL 59
Query: 65 PTYDRLRRGMLSQLGDDGKVVRR--------EVNVKKLGMQDRKQLRESILKLVEEDNDK 116
PTYDR+RRG+L + D G EV++ L ++ ++L E + K VE+DN++
Sbjct: 60 PTYDRMRRGILRKAVDGGGDGEGAGSLFKADEVDIANLDPREGRELMERVFKAVEDDNER 119
Query: 117 FLRKLRERIDRVGIDIPKIEIRYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRIL 176
FLR+ R+R+D+VGI++PKIE+RY+HL+I+ +VH+G RA+PTL NA IN E ++ +
Sbjct: 120 FLRRFRDRLDQVGIELPKIEVRYQHLDIEADVHVGKRALPTLLNATINTLEGLVS--LFI 177
Query: 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHE 236
S KRK++IL DV+G++KPSRMTLLLGPP +GK+TL+ AL GK D +LK++G+I YCGH
Sbjct: 178 SSNKRKLKILNDVNGIIKPSRMTLLLGPPSSGKSTLMRALTGKPDKNLKVSGEITYCGHT 237
Query: 237 FKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
FKEF P+RT AY+SQ+DLH EMTVRET+DFS RCLG G RY+ML+E++RRE+ AGIKPD
Sbjct: 238 FKEFYPERTSAYVSQHDLHNPEMTVRETLDFSRRCLGSGARYDMLSELTRRERNAGIKPD 297
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
PEIDA MKAT + G++ ++ TD VLK LGLDICADT+VG M RG+SGGQKKRVTTGEML
Sbjct: 298 PEIDALMKATVVEGKQNNIVTDLVLKALGLDICADTIVGGAMIRGISGGQKKRVTTGEML 357
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416
GPA L MDEISTGLDSS+TFQI KY++Q+ HV+ T ++SLLQP PE Y LFD+I+L+
Sbjct: 358 TGPATALFMDEISTGLDSSSTFQIVKYIRQVTHVMNATVMMSLLQPPPETYALFDDIVLI 417
Query: 417 SEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISV 476
+EG IVY GPRE +LEFFE GF+CP+RKGVADFLQEVTS+KDQ+QYWF + YRY+SV
Sbjct: 418 AEGYIVYHGPRENILEFFESAGFRCPERKGVADFLQEVTSRKDQQQYWFLEQDHYRYVSV 477
Query: 477 SDFVQGFSSFHVGQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKR 536
+F Q F FHVGQ+L +L VPYDKS+THPAAL KYG+S+++ +A REWLLMKR
Sbjct: 478 EEFAQNFKKFHVGQKLQKELQVPYDKSKTHPAALTTKKYGLSSLESLKAVMSREWLLMKR 537
Query: 537 NSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAF 596
NSF++IFK Q+ ++ I +T+F RT+MP +D +K+ GAL SLI +MFNG EL
Sbjct: 538 NSFLFIFKAFQLFVLGFITMTLFLRTKMPHEKFSDTSKYVGALTASLITIMFNGFGELQL 597
Query: 597 TVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFR 656
T+ +LP+F+KQRD LF+P W Y L +L++PLS++ES++W+ LTYY +GFAPAA R F+
Sbjct: 598 TIDKLPIFYKQRDFLFFPAWTYGLANIILKVPLSLMESSLWIVLTYYVVGFAPAAGRFFK 657
Query: 657 QYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWG 716
Q+LA+F + MAL+LFR +G+I R+ VVANT G F LLL+F+ GGF++++ DI+P+ IWG
Sbjct: 658 QFLAYFWTHQMALALFRLLGAILRSMVVANTFGMFVLLLIFLFGGFLVSRKDIKPWWIWG 717
Query: 717 YYVSPMMYGQNAIVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGA 776
Y+ SPMMY NA+ +NEFL RW+ P +D I PT+GK L+S+G+FT + YW+ IGA
Sbjct: 718 YWTSPMMYSNNALSVNEFLASRWAIPNNDSSISAPTIGKAFLQSKGYFTGEWGYWLSIGA 777
Query: 777 LFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKKASGQPGTEDTDMSVRSSSENV 836
+ GF I+FNIL++ A+ FL P+G A TV+ +D D K + + E + ++
Sbjct: 778 MIGFMIVFNILYLCALTFLRPIGSAS-TVVSDD-DTKSELEAESNQEQMSEVINGTN--- 832
Query: 837 GTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVL 896
GT ++GMVLPFQPLSL+F+H+NY VDMPAEMKAQG E RLQLL D+SG FRPGVL
Sbjct: 833 GTENRRSQRGMVLPFQPLSLSFNHMNYYVDMPAEMKAQGFTESRLQLLSDISGAFRPGVL 892
Query: 897 TALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHV 956
TAL+GVSGAGKTTLMDVLAGRKT G EGDI +SGYPK Q TFAR+SGYCEQ DIHSP++
Sbjct: 893 TALVGVSGAGKTTLMDVLAGRKTSGTIEGDIKLSGYPKKQETFARISGYCEQTDIHSPNL 952
Query: 957 TVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRL 1016
TVYES+++SAWLRLSS++D TRK+FV+EVM LVEL+ L +A+VGLPGV GLSTEQRKRL
Sbjct: 953 TVYESIVYSAWLRLSSEVDKNTRKVFVEEVMSLVELDVLRDALVGLPGVSGLSTEQRKRL 1012
Query: 1017 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1076
TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFE+FD
Sbjct: 1013 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFESFD 1072
Query: 1077 ELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLN 1136
ELLL+KRGG+VIYAG LG SQ LVEYFEA+PGVP+IT GYNPATWMLE+S+ AEA+L+
Sbjct: 1073 ELLLLKRGGRVIYAGQLGLHSQILVEYFEAIPGVPKITEGYNPATWMLEVSSSLAEARLD 1132
Query: 1137 VDFADIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWR 1196
+DFA++Y S+LY+ N+ELIK+LS P PG DL FPT+YSQ FL QC A WKQ QSYW+
Sbjct: 1133 IDFAEVYANSALYRSNQELIKQLSVPPPGFQDLSFPTKYSQNFLNQCVANTWKQFQSYWK 1192
Query: 1197 DPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMS 1256
DP YNA+R+ +T++ GL+FG +FW +G+ + DL NL GA Y AVFFLG+ N +++
Sbjct: 1193 DPPYNAMRYVMTLLYGLVFGTVFWRRGKNIESVNDLNNLLGATYAAVFFLGAANLLTLLP 1252
Query: 1257 VVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFF 1316
VVS ERTVFYRE+AAGMYS L+YAF+Q +E Y A Q V+Y +++YSM+G+ WKA +FF
Sbjct: 1253 VVSVERTVFYREKAAGMYSPLSYAFAQGFVEFCYSAVQGVLYTILIYSMIGYEWKADKFF 1312
Query: 1317 WFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRW 1376
+FL+ ++ +F FTL+ MM+VA T + + A+L F LS WN F+GF+IPR IP+WWRW
Sbjct: 1313 YFLFFMIAAFAYFTLFSMMLVACTASEMLAAVLVSFVLSSWNNFAGFIIPRPLIPVWWRW 1372
Query: 1377 YYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVKL 1436
+YW +PV+WT+YG++ SQ D + V +PG + TM VK L+ + GFK+DFL V +
Sbjct: 1373 FYWANPVSWTIYGVIASQFADSDRVVTVPGQSTTMVVKDFLEKNMGFKHDFLGYVVLAHF 1432
Query: 1437 VWLLAFVFVFTLAITLINFQRR 1458
+++ F F+F I +NFQ+R
Sbjct: 1433 GYVIIFFFLFGYGIKCLNFQKR 1454
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1817 bits (4706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 888/1457 (60%), Positives = 1107/1457 (75%), Gaps = 22/1457 (1%)
Query: 10 DIVRSLSMGSSAGNRSGRASSSFREVWKSSSNAFSRSQRDDDDEEELRWAAIERLPTYDR 69
DIVR S+ S G+ R +SS+R S+AF RS R++DDEE L+WAAIE+LPTYDR
Sbjct: 2 DIVRMGSVASGGGSVR-RTASSWRGT-SGRSDAFGRSVREEDDEEALKWAAIEKLPTYDR 59
Query: 70 LRRGMLSQLGDDGKVVRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVG 129
+R+G+L+ G + EV++ LG+Q+R+ L E +++ EEDN++FL KLR+R++RVG
Sbjct: 60 MRKGILTAGGVE------EVDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVG 113
Query: 130 IDIPKIEIRYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDV 189
ID P IE+R+E+L+I E ++G+R IPT N N +VL ++RI+ S KR I IL D+
Sbjct: 114 IDNPTIEVRFENLSIDAEAYVGNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISILHDI 173
Query: 190 SGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYI 249
SG+++P RM+LLLGPPG+GKT+LL+ALAGKLD LK++G++ Y GH+ EFVPQRT AYI
Sbjct: 174 SGIIRPGRMSLLLGPPGSGKTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYI 233
Query: 250 SQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALA 309
Q+DLH GEMTVRET+ FS RC GVGTRY+ML E+SRREKEA IKPDP+ID YMKA ++
Sbjct: 234 GQHDLHIGEMTVRETLAFSARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVE 293
Query: 310 GQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEIS 369
GQ+ S+ TDY+LK+LGL+ICADTMVGD M RG+SGGQKKRVTTGEMLVGPAK L MDEIS
Sbjct: 294 GQE-SVVTDYILKILGLEICADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEIS 352
Query: 370 TGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREK 429
TGLDSSTT+QI ++Q VH+L T +++LLQPAPE YDLFD+I+LLSEGQIVYQGPRE
Sbjct: 353 TGLDSSTTYQIVNSLRQSVHILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPREN 412
Query: 430 VLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVG 489
+LEFFE MGFKCP+RKGVADFLQEVTS+KDQ QYW R+D+PYRYISV+DF + F FHVG
Sbjct: 413 ILEFFEAMGFKCPERKGVADFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVG 472
Query: 490 QQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQIT 549
+ L ++L VP+D++R HPAAL ++YGIS M+L +ACF REWLLMKRNSFVYIFK Q+
Sbjct: 473 RNLGSELRVPFDRTRNHPAALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLI 532
Query: 550 IMSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRD 609
I+ I +TVF RT+M +V DGA F GA+F L+ +FNG AELA ++ +LP+F+KQRD
Sbjct: 533 ILGSIGMTVFLRTKMHRRSVEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRD 592
Query: 610 HLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMAL 669
LFYP WAYALP +VL+IP+S LE A+W+C+TYY +GF P R FR Y+ ++ MA
Sbjct: 593 LLFYPSWAYALPTWVLKIPISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMAS 652
Query: 670 SLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAI 729
LFR + ++GR VVA+T G+F L++ VLGGF+I++++I+ + IWGY+ SP+MY QNAI
Sbjct: 653 GLFRLLAALGREMVVADTFGSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAI 712
Query: 730 VINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFI 789
+NEFL W+K V DP T+G +LK RG F WYWI +GAL G+ +LFNILFI
Sbjct: 713 AVNEFLGHSWNK-VVDPTQSNDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFI 771
Query: 790 AAIQFLNPLGKAKPTVIEEDGDKKKKASGQPGTE----DTDMSVRSSSENVG----TTGH 841
+++L+PLGK + V EE+ +K E TD S N G T
Sbjct: 772 LFLEWLDPLGKGQAVVSEEELREKHVNRTGENVELLTLGTDSQNSPSDANAGRGEITGAD 831
Query: 842 GPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMG 901
K+GMVLPF PLS+ F ++ YSVDMP EMK +G+ EDRL LL+ VSG FRPGVLTALMG
Sbjct: 832 TRKRGMVLPFTPLSITFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMG 891
Query: 902 VSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYES 961
VSGAGKTTLMDVLAGRKTGGY EGDISISGYPK Q TFAR++GYCEQNDIHSPHVTVYES
Sbjct: 892 VSGAGKTTLMDVLAGRKTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYES 951
Query: 962 LLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVE 1021
LL+SAWLRL S++DS+ RKMFV+EVM+LVEL L A+VGLPGV+GLSTEQRKRLTIAVE
Sbjct: 952 LLYSAWLRLPSEVDSEARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVE 1011
Query: 1022 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1081
LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LM
Sbjct: 1012 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1071
Query: 1082 KRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFAD 1141
KRGG+ IY GPLG S L+ YFE + GV +I +GYNPATWMLE++T E L ++FA+
Sbjct: 1072 KRGGEEIYVGPLGHNSCHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAE 1131
Query: 1142 IYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYN 1201
+Y S LYQRN+ LI ELSTP PGS+DL+FPTQ+SQPF QC AC WKQ +SYWR+P Y
Sbjct: 1132 VYRNSDLYQRNKTLISELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYT 1191
Query: 1202 ALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTE 1261
A R T V+ L+FG IF + G+K K+ DL N G++Y AV F+G N +V +V E
Sbjct: 1192 ATRIFFTTVIALIFGTIFLNLGKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQPIVDVE 1251
Query: 1262 RTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYM 1321
RTVFYRE+AAGMYS L YAF+QVLIE+ ++ QTVVY LI+YS++GF W ++FFW+++
Sbjct: 1252 RTVFYREKAAGMYSALPYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFF 1311
Query: 1322 VMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLS 1381
+ +FM FT YGMM VA+TP I AI+S F +WN+F+GFLIPR +IPIWWRWY W
Sbjct: 1312 MFFTFMYFTFYGMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWAC 1371
Query: 1382 PVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLA 1441
PVAWTLYGLV SQ GDI + G V+ ++ FGF++D+L VA + +
Sbjct: 1372 PVAWTLYGLVASQYGDITNSTLEDGE----VVQDYIRRYFGFRHDYLGYVATAVVGFAAL 1427
Query: 1442 FVFVFTLAITLINFQRR 1458
F FVF +I + NFQRR
Sbjct: 1428 FAFVFAFSIKVFNFQRR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1816 bits (4703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 881/1461 (60%), Positives = 1097/1461 (75%), Gaps = 27/1461 (1%)
Query: 12 VRSLSMGSSAGNRSGRASSSFREVWKSSSNAFSRSQRDDDDEEELRWAAIERLPTYDRLR 71
V S+ +G S SG +W+ + FSRS R++DDEE LRWAA+E+LPTYDR+R
Sbjct: 10 VASMRLGGSMRGDSG-------SMWRRGDDVFSRSSREEDDEEALRWAALEKLPTYDRVR 62
Query: 72 RGML---SQLGDDGKVVRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRV 128
R +L G + V+V LG ++R+ L E ++++ +EDN+KFL KL++R+DRV
Sbjct: 63 RAILPLGGDDGAGDGGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRV 122
Query: 129 GIDIPKIEIRYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKD 188
GID+P IE+R+EHL + EV +G+ +PT+ N++ N E +L ILP++K+ + +L D
Sbjct: 123 GIDMPTIEVRFEHLEAEAEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHD 182
Query: 189 VSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAY 248
VSG++KP RMTLLLGPPG+GKTTLL+ALAG+L DLK +GK+ Y GH +EFVP+RT AY
Sbjct: 183 VSGIIKPRRMTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAY 242
Query: 249 ISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATAL 308
ISQ+DLH GEMTVRET+ FS RC GVG+R++ML E+SRREK A IKPD +IDA+MKA A+
Sbjct: 243 ISQHDLHIGEMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAM 302
Query: 309 AGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEI 368
GQ+ ++ TDY+LK+LGL+ICADTMVGD+M RG+SGGQ+KRVTTGEMLVGPA+ L MDEI
Sbjct: 303 GGQEANVNTDYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEI 362
Query: 369 STGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPRE 428
STGLDSSTTFQI ++Q VH+L T ++SLLQPAPE Y+LFD+IILLS+GQIVYQGPRE
Sbjct: 363 STGLDSSTTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE 422
Query: 429 KVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHV 488
VLEFFE MGFKCPDRKGVADFLQEVTSKKDQ QYW R D+PYR+++V +FV F SFH
Sbjct: 423 DVLEFFESMGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHT 482
Query: 489 GQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQI 548
G+ +AN+LAVP+DKS++HPAAL +YG +L +A RE LLMKRNSFVY+F+T Q+
Sbjct: 483 GRAIANELAVPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQL 542
Query: 549 TIMSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQR 608
++SLIA+T+FFRT+M +V G + GALFF ++ +MFNG +ELA TVF+LPVFFKQR
Sbjct: 543 MVVSLIAMTLFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQR 602
Query: 609 DHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMA 668
D LFYP W+Y +P ++L+IP++ +E +V LTYY IGF F+QYL A+N MA
Sbjct: 603 DLLFYPAWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMA 662
Query: 669 LSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNA 728
SLFRFIG R +VAN +F LL+ VLGGF++A++ ++ + IWGY++SPMMY QNA
Sbjct: 663 GSLFRFIGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNA 722
Query: 729 IVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILF 788
I +NE + W+K V+ +E T+G +LKSRG F WYWI GA+ GFTILFN LF
Sbjct: 723 ISVNELMGHSWNKIVNSSASNE-TLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALF 781
Query: 789 IAAIQFLNPLGKAKPTVIEEDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHG------ 842
A+ +L P G ++ +V EE+ +K+ D +S S+ +G
Sbjct: 782 TLALTYLRPYGNSRQSVSEEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVD 841
Query: 843 -----PKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLT 897
++GMVLPF PLSL+F +V YSVDMP EMKAQG+ +DRL+LL+ VSG FRPGVLT
Sbjct: 842 DDTEVTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLT 901
Query: 898 ALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVT 957
ALMGVSGAGKTTLMDVLAGRKTGGY EG I+ISGYPK Q TFARVSGYCEQNDIHSP VT
Sbjct: 902 ALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVT 961
Query: 958 VYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLT 1017
VYESLLFSAWLRL D+DS TRKMF++EVM+LVEL+ L +A+VGLPGV+GLSTEQRKRLT
Sbjct: 962 VYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLT 1021
Query: 1018 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDE
Sbjct: 1022 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDE 1081
Query: 1078 LLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNV 1137
L LMKRGG+ IYAGPLG S +L++YFE++PGV +I +GYNPATWMLE++T E L V
Sbjct: 1082 LFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGV 1141
Query: 1138 DFADIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRD 1197
DF+DIY +S LYQRN+ LIK+LS PAP SSDLYFPTQYSQ L QC AC WKQ SYWR+
Sbjct: 1142 DFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRN 1201
Query: 1198 PQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSV 1257
P YNA+RF T V+ LLFG IFWD G K K QDL N G++Y AV F+G N SV V
Sbjct: 1202 PPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPV 1261
Query: 1258 VSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFW 1317
V+ ERTVFYRERAAGMYS YAF QV+IE+ Y Q VY +I+Y+M+GF W A +FFW
Sbjct: 1262 VAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFW 1321
Query: 1318 FLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWY 1377
+L+ ++ + + FT YGMM V LTP I +I+S F ++WNLFSGF+IPR ++PIWWRWY
Sbjct: 1322 YLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWY 1381
Query: 1378 YWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVKLV 1437
W PVAWTLYGLV SQ GDIE +E VK +++ FGFK+ +L VA V
Sbjct: 1382 CWACPVAWTLYGLVVSQFGDIETPME-----DGTPVKVFVENYFGFKHSWLGWVATVVAA 1436
Query: 1438 WLLAFVFVFTLAITLINFQRR 1458
+ F +F AI NFQ+R
Sbjct: 1437 FAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1815 bits (4701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 883/1450 (60%), Positives = 1112/1450 (76%), Gaps = 22/1450 (1%)
Query: 18 GSSAGNRSGRASSSFRE---VWKS--SSNAFSRSQRDDDDEEELRWAAIERLPTYDRLRR 72
G G+ G S R W+S +S+ F RS R++DDEE L+WAA+E+LPTYDRLR+
Sbjct: 5 GYRGGSLRGSLQGSLRRSVSAWRSPSTSDVFGRSSREEDDEEALKWAALEKLPTYDRLRK 64
Query: 73 GMLSQLGDDGKVVRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDI 132
G+++ GD G++ +EV+++ LG Q+RK L E +++ EEDN++FL KLR R++RVGID
Sbjct: 65 GIMT--GDGGEI--QEVDIQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDN 120
Query: 133 PKIEIRYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGL 192
P IE+R+EHLNI E +G+R +PTL N +N A +L +L ++PS KR I IL DVSG+
Sbjct: 121 PTIEVRFEHLNINAEAFVGNRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGI 180
Query: 193 VKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQN 252
+KP RMTLLLGPPGAGKTTLL+ALAGKLD+ LK+TG + Y GH EFVPQRT AYISQ+
Sbjct: 181 IKPCRMTLLLGPPGAGKTTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQH 240
Query: 253 DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQK 312
D+H GEMTVRET+ FS RC GVGTRYEML E+SRREKEA IKPDP++D YMKA A+ GQ+
Sbjct: 241 DVHIGEMTVRETLAFSSRCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQE 300
Query: 313 TSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGL 372
S+ TDY+LK+LGLDICADTMVGD M RG+SGGQKKRVTTGEMLVGP+K L MDEISTGL
Sbjct: 301 -SVVTDYILKILGLDICADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGL 359
Query: 373 DSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLE 432
DSSTTFQI ++Q VH+L T +++LLQPAPE YDLFD+I+LLS+GQIVYQGPRE VLE
Sbjct: 360 DSSTTFQIVNSLRQSVHILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLE 419
Query: 433 FFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQL 492
FFE MGFKCP+RKGVADFLQEVTS+KDQ+QYW R+++PYR++ V++F + F SFHVG +L
Sbjct: 420 FFESMGFKCPERKGVADFLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKL 479
Query: 493 ANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMS 552
+L+ P+D+SR HPAAL +KYGIS M+L +AC REWLLMKRNSFVYIFK Q+ +++
Sbjct: 480 HEELSTPFDRSRNHPAALTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLA 539
Query: 553 LIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLF 612
LIA+TVFFRT++P + D F+GA+F L+ +FNG AELA ++ +LPVF+KQRD LF
Sbjct: 540 LIAMTVFFRTKLPRNGLEDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLF 599
Query: 613 YPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLF 672
YPPWAYALP ++L+IP+S +E +W+ +TYY IGF P R+FR YL ++ +A LF
Sbjct: 600 YPPWAYALPTWILKIPISFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLF 659
Query: 673 RFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVIN 732
R + ++GR VVA+T G F L++ VLGGF+IA++ I+ F IWGY+ SP+MY QNAI +N
Sbjct: 660 RLLAAVGRDMVVADTFGAFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVN 719
Query: 733 EFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAI 792
EFL W+K V T+G+ L++RG F WYWI +GAL G+ +LFN LFI +
Sbjct: 720 EFLGHSWNKLVDATG---QTLGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFL 776
Query: 793 QFLNPLGKAKPTVIEEDGDKKKK----ASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMV 848
++L+PLGK + TV EE +K+ A+ + T + + S + G+ KKGMV
Sbjct: 777 EWLDPLGKGQTTVSEEALQEKEANRTGANVELATRGSAATSDGGSVEIRKDGN-RKKGMV 835
Query: 849 LPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKT 908
LPF PLS+ F +V YSVDMP EMK +G+ ED+L LL+ VSG FRPGVLTALMGVSG GKT
Sbjct: 836 LPFTPLSITFDNVKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKT 895
Query: 909 TLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWL 968
TLMDVLAGRKTGGY EGDI ISGYPKNQ TFAR+SGYCEQNDIHSPHVTVYESLL+SAWL
Sbjct: 896 TLMDVLAGRKTGGYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWL 955
Query: 969 RLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSI 1028
RL +++D K RKMFVDEVMDLVEL L ++VGLPGV GLSTEQRKRLTIAVELVANPSI
Sbjct: 956 RLPAEVDEKQRKMFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSI 1015
Query: 1029 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1088
IFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG+ I
Sbjct: 1016 IFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEI 1075
Query: 1089 YAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSSL 1148
Y GPLGRQS L++YFE++ GV +I YNPATWMLE++T + E L ++FA++Y S L
Sbjct: 1076 YVGPLGRQSSHLIKYFESIDGVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDL 1135
Query: 1149 YQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVT 1208
Y+RN++LIKELSTP PGS DL+F TQ+SQ F++QC AC WKQ +SYWR+P Y A R T
Sbjct: 1136 YKRNKDLIKELSTPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFT 1195
Query: 1209 IVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRE 1268
+V+ L+FG IFWD G+K DL N G++Y AV F+G NA +V +V ERTVFYRE
Sbjct: 1196 VVIALIFGTIFWDLGKKRSTSLDLINAMGSMYAAVLFIGIQNAQTVQPIVDVERTVFYRE 1255
Query: 1269 RAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQ 1328
+AAGMYS L YA++QVLIE+ ++ QT++Y L++YSM+GF W A +F W+++ + +F+
Sbjct: 1256 KAAGMYSALPYAYAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLY 1315
Query: 1329 FTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLY 1388
FT YGMM VA+TP I AI++ F ++WN+F+GF+IPR +IPIWWRWYYW PVAWTLY
Sbjct: 1316 FTYYGMMAVAMTPNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLY 1375
Query: 1389 GLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFTL 1448
GLV SQ G+ + S TVK L+ GF++DFLPVV V+ +V+ + F +F
Sbjct: 1376 GLVVSQFGEYTDTM----SDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAF 1431
Query: 1449 AITLINFQRR 1458
+I +NFQRR
Sbjct: 1432 SIKTLNFQRR 1441
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1458 | ||||||
| 359481989 | 1434 | PREDICTED: pleiotropic drug resistance p | 0.965 | 0.981 | 0.756 | 0.0 | |
| 255587046 | 1437 | ATP-binding cassette transporter, putati | 0.965 | 0.979 | 0.754 | 0.0 | |
| 224069796 | 1463 | predicted protein [Populus trichocarpa] | 0.981 | 0.978 | 0.738 | 0.0 | |
| 147794195 | 1456 | hypothetical protein VITISV_025837 [Viti | 0.962 | 0.964 | 0.733 | 0.0 | |
| 356572530 | 1437 | PREDICTED: ABC transporter G family memb | 0.980 | 0.995 | 0.715 | 0.0 | |
| 359486942 | 1447 | PREDICTED: pleiotropic drug resistance p | 0.978 | 0.985 | 0.726 | 0.0 | |
| 359486907 | 1449 | PREDICTED: pleiotropic drug resistance p | 0.978 | 0.984 | 0.722 | 0.0 | |
| 359486909 | 1437 | PREDICTED: pleiotropic drug resistance p | 0.970 | 0.984 | 0.720 | 0.0 | |
| 359486905 | 1442 | PREDICTED: pleiotropic drug resistance p | 0.973 | 0.984 | 0.719 | 0.0 | |
| 297740081 | 1357 | unnamed protein product [Vitis vinifera] | 0.928 | 0.997 | 0.765 | 0.0 |
| >gi|359481989|ref|XP_002277172.2| PREDICTED: pleiotropic drug resistance protein 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2292 bits (5940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1078/1425 (75%), Positives = 1249/1425 (87%), Gaps = 17/1425 (1%)
Query: 34 EVWKSSSNAFSRSQRDDDDEEELRWAAIERLPTYDRLRRGMLSQLGDDGKVVRREVNVKK 93
EVW + + F+RS R DD EEELRWAAIERLPTYDRLRRGML Q+ D+G+VV +V+V K
Sbjct: 27 EVWTAPPDVFNRSGRQDD-EEELRWAAIERLPTYDRLRRGMLRQVLDNGRVVTDDVDVTK 85
Query: 94 LGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIRYEHLNIQGEVHIGSR 153
LG+QD+KQL ESILK+VE+DN+KFL +LR+R DRVGI+ PKIE+RY++L+I+G+V++GSR
Sbjct: 86 LGVQDKKQLMESILKVVEDDNEKFLHRLRDRTDRVGIETPKIEVRYQNLSIEGDVYVGSR 145
Query: 154 AIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLL 213
A+PTL NA +N E VLG + + PSKKRKIQILKDVSG+VKPSRMTLLLGPP +GKTTLL
Sbjct: 146 ALPTLLNATLNTIEAVLGLIHLAPSKKRKIQILKDVSGIVKPSRMTLLLGPPSSGKTTLL 205
Query: 214 MALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLG 273
+ALAGKLD DLK++GK+ YCGHE EF+PQRTCAYISQ+DLH GEMTVRET+DFSGRCLG
Sbjct: 206 LALAGKLDHDLKVSGKVTYCGHELDEFIPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 265
Query: 274 VGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTM 333
VGTRYEMLAE+SRRE+EAGIKPDPEIDA+MKATA++GQ+TSL TDYVLK+LGLDICAD M
Sbjct: 266 VGTRYEMLAELSRREREAGIKPDPEIDAFMKATAMSGQETSLVTDYVLKILGLDICADIM 325
Query: 334 VGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEI 393
VGD MRRG+SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQI K+M+QMVH++++
Sbjct: 326 VGDDMRRGISGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQIVKFMRQMVHIMDV 385
Query: 394 TTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQE 453
T I+SLLQPAPE YDLFD+IILLS+GQIVYQGPRE VLEFFEYMGF+CP+RKGVADFLQE
Sbjct: 386 TMIISLLQPAPETYDLFDDIILLSDGQIVYQGPRENVLEFFEYMGFRCPERKGVADFLQE 445
Query: 454 VTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDKSRTHPAALVKN 513
VTSKKDQEQYW++++QPY + SV DFV+ F+SFHVGQQL+ +L+VPYDK+RTHPAALV
Sbjct: 446 VTSKKDQEQYWYKRNQPYTHASVPDFVEAFNSFHVGQQLSAELSVPYDKTRTHPAALVTE 505
Query: 514 KYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGA 573
KYGISN +LF+ACF REWLLMKRNSFVYIFKT+QITIMSLIALTVF RT+MP G +ADG
Sbjct: 506 KYGISNYELFKACFAREWLLMKRNSFVYIFKTTQITIMSLIALTVFLRTQMPHGTLADGG 565
Query: 574 KFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILE 633
KF+GALFFSLIN+MFNG+AELA TVFRLPVFFKQRD LFYP WA+ALPI+VLRIPLS +E
Sbjct: 566 KFFGALFFSLINVMFNGMAELAMTVFRLPVFFKQRDFLFYPAWAFALPIWVLRIPLSFME 625
Query: 634 SAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTL 693
S IW+ LTYYTIGFAPAASR FRQ+LAFF ++ MALSLFRFI ++GRT+VVANTLGTFTL
Sbjct: 626 SGIWIILTYYTIGFAPAASRFFRQFLAFFGIHQMALSLFRFIAAVGRTQVVANTLGTFTL 685
Query: 694 LLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERWSKPVSDPKIHEPTV 753
L+VFVLGGF+I+K+DIEPFMIWGYY+SPMMYGQNAIV+NEFLD+RW+ P +D + +EPTV
Sbjct: 686 LMVFVLGGFIISKNDIEPFMIWGYYISPMMYGQNAIVMNEFLDKRWAAPNTDSRFNEPTV 745
Query: 754 GKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKK 813
GK+LLKSRGFF YW+WIC+ AL F++LFN+LF+AA+ FLNPLG K ++
Sbjct: 746 GKVLLKSRGFFVDEYWFWICVVALLAFSLLFNVLFVAALTFLNPLGDTKNAIL------- 798
Query: 814 KKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKA 873
E TDM+V +SSE VG+ + PK+GMVLPFQPLSLAF HVNY VDMPAEMK+
Sbjct: 799 --------NEGTDMAVINSSEIVGSAENAPKRGMVLPFQPLSLAFEHVNYFVDMPAEMKS 850
Query: 874 QGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP 933
QG+EEDRLQLLRDVSG FRPG+LTAL+GVSGAGKTTLMDVLAGRKTGGY EG ISISGYP
Sbjct: 851 QGVEEDRLQLLRDVSGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 910
Query: 934 KNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE 993
KNQ TFARVSGYCEQNDIHSP+VTV+ESLL+SAWLRLSSD+D++TRKMFV+EVM+LVEL+
Sbjct: 911 KNQKTFARVSGYCEQNDIHSPYVTVHESLLYSAWLRLSSDVDTQTRKMFVEEVMELVELK 970
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
PL +++VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT
Sbjct: 971 PLRDSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1030
Query: 1054 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRI 1113
VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGR S KLVEYFEA+PGVP+I
Sbjct: 1031 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRHSHKLVEYFEAIPGVPKI 1090
Query: 1114 TNGYNPATWMLEISTPTAEAQLNVDFADIYVRSSLYQRNEELIKELSTPAPGSSDLYFPT 1173
G NPATWML +S + EAQ+ VDFA+IY SSLYQRN+ELIKELSTP P S DLYFPT
Sbjct: 1091 KEGSNPATWMLVVSASSVEAQMEVDFAEIYANSSLYQRNQELIKELSTPPPASKDLYFPT 1150
Query: 1174 QYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQ 1233
++SQPF QCKACFWKQ SYWR+PQYNA+RF +TIV+G LFG+IFW+KG++T KQQDL
Sbjct: 1151 EFSQPFSTQCKACFWKQHWSYWRNPQYNAIRFFMTIVIGALFGVIFWNKGEQTTKQQDLM 1210
Query: 1234 NLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAF 1293
NL GA+Y AV FLG+TNA++V S+V+ ERTVFYRERAAGMYS L YAF+QV IE IYVA
Sbjct: 1211 NLLGAMYAAVLFLGATNASAVQSIVAIERTVFYRERAAGMYSPLPYAFAQVSIEAIYVAI 1270
Query: 1294 QTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFF 1353
QT+VY L+LYSM+GF WK +F WF Y ++M F+ FT+YGMM+VALTP QI AI+ FF
Sbjct: 1271 QTIVYTLLLYSMIGFDWKVGKFLWFYYYILMCFIYFTMYGMMVVALTPGHQIAAIVMSFF 1330
Query: 1354 LSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTV 1413
LS WNLFSGFLIPR QIP+WWRWYYW SPVAWTLYGLVTSQVGD +E+PGS + +
Sbjct: 1331 LSFWNLFSGFLIPRPQIPVWWRWYYWASPVAWTLYGLVTSQVGDKNALLEVPGS-GNVPL 1389
Query: 1414 KQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFTLAITLINFQRR 1458
K LK+S GF+YDFLP VAV +VW+ F FVF I +NFQRR
Sbjct: 1390 KLFLKESLGFEYDFLPAVAVAHVVWVALFFFVFAYGIRFLNFQRR 1434
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255587046|ref|XP_002534113.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223525836|gb|EEF28273.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2272 bits (5887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1074/1424 (75%), Positives = 1240/1424 (87%), Gaps = 17/1424 (1%)
Query: 36 WKSSSNAFSRSQRDDDDEEELRWAAIERLPTYDRLRRGMLSQLGDDGKVVRREVNVKKLG 95
W S + F+RSQR ++DEEELRWAAIERLPTY R+R+GML Q+ D+G V+ EV+++KLG
Sbjct: 30 WTSGNGVFNRSQRREEDEEELRWAAIERLPTYRRMRKGMLRQVLDNGSVIESEVDLRKLG 89
Query: 96 MQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIRYEHLNIQGEVHIGSRAI 155
+QD+K+L ESILK E+DN+KFL +LRER DRVGIDIPKIE+R+EHL++ G+VH+GSRA+
Sbjct: 90 LQDKKKLMESILKDAEDDNEKFLTRLRERADRVGIDIPKIEVRFEHLSVGGDVHVGSRAL 149
Query: 156 PTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMA 215
PTL NA +N E VLG + + PSKKR+IQIL+D+SG+V+PSRMTLLLGPPGAGKTTLL+A
Sbjct: 150 PTLLNATLNSVETVLGLIGLAPSKKRRIQILQDLSGIVRPSRMTLLLGPPGAGKTTLLLA 209
Query: 216 LAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVG 275
LAGKLD DL+ GKI YCGHE EF+PQRTCAYISQ+D+H GEMTVRET DFSGRCLGVG
Sbjct: 210 LAGKLDQDLRKLGKITYCGHELHEFIPQRTCAYISQHDVHHGEMTVRETFDFSGRCLGVG 269
Query: 276 TRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335
TRYEMLAE+SRREK +GIKPD EIDA+MKATAL+GQKTSL TDYVLKLLGLDICAD +VG
Sbjct: 270 TRYEMLAELSRREKASGIKPDSEIDAFMKATALSGQKTSLVTDYVLKLLGLDICADIVVG 329
Query: 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITT 395
DQMRRG+SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQIC++M+QMVH+++IT
Sbjct: 330 DQMRRGISGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICRFMRQMVHIMDITM 389
Query: 396 IVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVT 455
I+SLLQPAPE ++LFD++ILLS+GQIVYQGPRE +LEFFEYMGF+CP+RKGVADFLQEVT
Sbjct: 390 IISLLQPAPETFELFDDVILLSDGQIVYQGPRENILEFFEYMGFRCPERKGVADFLQEVT 449
Query: 456 SKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDKSRTHPAALVKNKY 515
SKKDQEQYW++KDQPY +ISV DFVQGFSSFH+GQQLA+DL+VPY+KSR HPAALV +KY
Sbjct: 450 SKKDQEQYWYKKDQPYSFISVPDFVQGFSSFHIGQQLASDLSVPYNKSRAHPAALVMDKY 509
Query: 516 GISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKF 575
GISN +LF+ACF REWLLMKRNSFVYIFKT QITIMS+IA TVF RTEM VG VADG KF
Sbjct: 510 GISNWELFKACFSREWLLMKRNSFVYIFKTVQITIMSIIAFTVFLRTEMKVGTVADGQKF 569
Query: 576 YGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESA 635
YGALFFSLIN+MFNG+AELA T+FRLPV+FKQRD LFYP WA+ALPI+VLRIPLS LES
Sbjct: 570 YGALFFSLINVMFNGMAELALTMFRLPVYFKQRDFLFYPAWAFALPIWVLRIPLSFLESG 629
Query: 636 IWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLL 695
IW+ LTYYTIGFAPAASR FRQ+L FF ++ MALSLFRFI ++GRTE+VANTLGTFTLLL
Sbjct: 630 IWILLTYYTIGFAPAASRFFRQFLTFFGIHQMALSLFRFIAAVGRTEIVANTLGTFTLLL 689
Query: 696 VFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERWSKPVSDPKIHEPTVGK 755
VFVLGGF+IA++DI P+MIWGYYVSPMMYGQNAIV+NEFLDERWS P DP+I PTVGK
Sbjct: 690 VFVLGGFIIAREDIAPWMIWGYYVSPMMYGQNAIVMNEFLDERWSAPNPDPRIDAPTVGK 749
Query: 756 LLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKK 815
+LLK+RGFFT +YW+WIC+GALFGF++LFNILFIAA+ FLNPLG +K +++
Sbjct: 750 VLLKARGFFTDDYWFWICVGALFGFSLLFNILFIAALTFLNPLGNSKGHIVD-------- 801
Query: 816 ASGQPGTEDTDMSVRSSSENVGTTG-HGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQ 874
E TDM+VR+SS+ VG K+GMVLPFQPLSLAF+ VNY VDMPAEMK +
Sbjct: 802 -------EGTDMAVRNSSDGVGAERLMTSKRGMVLPFQPLSLAFNLVNYYVDMPAEMKKE 854
Query: 875 GIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934
G++E RLQLLRDVSG FRPG+LTAL+GVSGAGKTTLMDVLAGRKT GY +G I+ISGYPK
Sbjct: 855 GVQEKRLQLLRDVSGSFRPGILTALVGVSGAGKTTLMDVLAGRKTTGYIDGSINISGYPK 914
Query: 935 NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
NQATFARVSGYCEQNDIHSPHVTVYESLL+SAWLRLS D+D+K RKMF++E+MDLVEL+P
Sbjct: 915 NQATFARVSGYCEQNDIHSPHVTVYESLLYSAWLRLSKDVDTKMRKMFIEEIMDLVELDP 974
Query: 995 LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
+ +A+VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV
Sbjct: 975 IRDALVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1034
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRIT 1114
DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGR S KL+EYFEA+PGVP+I
Sbjct: 1035 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRFSHKLIEYFEAIPGVPKIK 1094
Query: 1115 NGYNPATWMLEISTPTAEAQLNVDFADIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQ 1174
+GYNPATWML+IST + E QLNVDFA+IYV SSLYQRN+ELIKELS P GS DLY PT+
Sbjct: 1095 DGYNPATWMLDISTSSMETQLNVDFAEIYVNSSLYQRNQELIKELSIPPSGSKDLYLPTK 1154
Query: 1175 YSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQN 1234
YSQ FL+QCKACFWK SYWR+PQYNA+RF +T+++G LFGLIFW+KGQK KQQDL N
Sbjct: 1155 YSQSFLVQCKACFWKHHWSYWRNPQYNAIRFFLTVIIGTLFGLIFWNKGQKIGKQQDLMN 1214
Query: 1235 LFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQ 1294
L GA+Y AVFFLG+ N +SV VV+ ERTVFYRERAAGMYS L YAF+QV IE+IY+A Q
Sbjct: 1215 LLGAIYSAVFFLGACNTSSVQPVVAIERTVFYRERAAGMYSALPYAFAQVAIEVIYIAIQ 1274
Query: 1295 TVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFL 1354
TVVY LIL+SM+GF WK +F WF Y + MSF+ FTLYGMM+VALTP QI AI+ FF+
Sbjct: 1275 TVVYTLILFSMIGFEWKVGKFLWFFYFLFMSFVYFTLYGMMVVALTPNHQIAAIVMSFFI 1334
Query: 1355 SLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVK 1414
SLWN+F+GF+IPR+ IPIWWRWYYW SPVAWT YGLVTSQVGD VEIPG+ M VK
Sbjct: 1335 SLWNMFTGFIIPRMLIPIWWRWYYWASPVAWTTYGLVTSQVGDKNALVEIPGA-GNMPVK 1393
Query: 1415 QLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFTLAITLINFQRR 1458
LK++ G+ YDFLP VA L W++ F VF I NFQ+R
Sbjct: 1394 VFLKETLGYDYDFLPAVAAAHLGWIIIFFLVFAYGIKYFNFQKR 1437
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069796|ref|XP_002326416.1| predicted protein [Populus trichocarpa] gi|222833609|gb|EEE72086.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2242 bits (5809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1060/1436 (73%), Positives = 1248/1436 (86%), Gaps = 5/1436 (0%)
Query: 28 ASSSFREVWKSSSNAFS----RSQRDDDDEEELRWAAIERLPTYDRLRRGMLSQLGDDGK 83
AS+S RE W + + FS R Q+ DDEEELRWAAIERLPTYDR+R+G+L Q+ D+G+
Sbjct: 28 ASASIREAWTAPVDVFSQNSGRRQQQMDDEEELRWAAIERLPTYDRMRKGVLRQVLDNGR 87
Query: 84 VVRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIRYEHLN 143
+V+ EV+V +LGMQD+KQL E+IL++VEEDN+KFLR++R+R DRVGI+IPKIE+R++HL+
Sbjct: 88 MVQSEVDVTRLGMQDKKQLMENILRVVEEDNEKFLRRVRDRTDRVGIEIPKIEVRFQHLS 147
Query: 144 IQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLG 203
++GEV +GSRA+PTL NA +N E++LG + + PSKKR +QIL+D+SG+VKPSRM LLLG
Sbjct: 148 VEGEVFVGSRALPTLLNATLNAVESILGLVGLAPSKKRTVQILQDISGIVKPSRMALLLG 207
Query: 204 PPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRE 263
PP +GKTT+LMALAGKL +L+ +GKI YCGHE KEFVPQR+CAYISQ+DLH+GEMTVRE
Sbjct: 208 PPSSGKTTMLMALAGKLHRELRSSGKITYCGHELKEFVPQRSCAYISQHDLHYGEMTVRE 267
Query: 264 TMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKL 323
T+DFSGRCLGVGTRYE+LAE+SRREKEAGIKPDPEIDA+MKATA++GQ+ SL TDY LK+
Sbjct: 268 TLDFSGRCLGVGTRYELLAELSRREKEAGIKPDPEIDAFMKATAMSGQEHSLVTDYTLKI 327
Query: 324 LGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKY 383
LGLDICAD +VG+ M+RG+SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDS+TTFQICK+
Sbjct: 328 LGLDICADILVGNDMKRGISGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSATTFQICKF 387
Query: 384 MKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPD 443
M+QMVH +++T IVSLLQPAPE ++LFD+IILLSEGQ+VYQGPRE VLEFFE+MGF+CPD
Sbjct: 388 MRQMVHTMDVTMIVSLLQPAPETFELFDDIILLSEGQVVYQGPREHVLEFFEHMGFRCPD 447
Query: 444 RKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDKS 503
RKG ADFLQEVTSKKDQEQYWFRK+ PYR+ISV +FV+GF+SFHVGQQLA+DL PYDKS
Sbjct: 448 RKGAADFLQEVTSKKDQEQYWFRKNIPYRFISVLEFVRGFNSFHVGQQLASDLRTPYDKS 507
Query: 504 RTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTE 563
R HPAALV KYGISN +LFRACF REWLLMKRNSF+YIFKT+QITIMS+IA TVFFRTE
Sbjct: 508 RAHPAALVTEKYGISNWELFRACFSREWLLMKRNSFLYIFKTTQITIMSIIAFTVFFRTE 567
Query: 564 MPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIF 623
M VG V G KF+GALFFSL+N+MFNG+AEL+ TVFRLPVF+KQRD LF+P WA+ LPI+
Sbjct: 568 MKVGTVLGGQKFFGALFFSLVNVMFNGMAELSMTVFRLPVFYKQRDFLFFPAWAFGLPIW 627
Query: 624 VLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEV 683
VLRIPLS++ESAIW+ +TYYTIGFAP+ASR FRQ+LAFF ++ MAL+LFRFI ++GRT+V
Sbjct: 628 VLRIPLSLMESAIWIIITYYTIGFAPSASRFFRQFLAFFCIHQMALALFRFIAAVGRTQV 687
Query: 684 VANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERWSKPV 743
VANTLGTFTLLLVFVLGGF++AKDDIEP+MIWGYY SPMMYGQNAIV+NEFLDERWS
Sbjct: 688 VANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYSSPMMYGQNAIVMNEFLDERWSVNN 747
Query: 744 SDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKP 803
+D TVGK+LLK+RGFFT +YW+WICIGALFGF++LFN+LFI A+ FLNPLG +K
Sbjct: 748 TDSNFAGETVGKVLLKARGFFTDDYWFWICIGALFGFSLLFNVLFIVALTFLNPLGDSKA 807
Query: 804 TVIEEDGDKKKK-ASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVN 862
V+++D K KK +SGQ E M+ R+S+E G + K+GMVLPFQPLSLAF+HV+
Sbjct: 808 VVVDDDAKKNKKTSSGQQRAEGIPMATRNSTEIGGAVDNSTKRGMVLPFQPLSLAFNHVS 867
Query: 863 YSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 922
Y VDMP EMK+QGI+E+RLQLLRDVSG FRPG+LTAL+GVSGAGKTTLMDVLAGRKTGGY
Sbjct: 868 YYVDMPDEMKSQGIDEERLQLLRDVSGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGY 927
Query: 923 TEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMF 982
EG I+ISGYPKNQ TFARVSGYCEQNDIHSP VTVYESLL+SAWLRLS DID+KTRKMF
Sbjct: 928 IEGSINISGYPKNQETFARVSGYCEQNDIHSPRVTVYESLLYSAWLRLSKDIDTKTRKMF 987
Query: 983 VDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
V+EVM+LVEL PL +A+VGLPG+DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA
Sbjct: 988 VEEVMELVELNPLRDALVGLPGLDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1047
Query: 1043 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVE 1102
AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG LG +S KL+E
Sbjct: 1048 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGSLGHRSHKLIE 1107
Query: 1103 YFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSSLYQRNEELIKELSTP 1162
YFEAVPGVP+I + YNPATWMLEIS P+ EAQL+VDFA+ Y SSLYQRN+E+IKELSTP
Sbjct: 1108 YFEAVPGVPKIRDAYNPATWMLEISAPSMEAQLDVDFAEQYANSSLYQRNQEIIKELSTP 1167
Query: 1163 APGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDK 1222
APGS DLYF TQYSQ FL QCKACFWKQ SYWR+P+YNA+R +T+ +G++FGLIFWDK
Sbjct: 1168 APGSKDLYFRTQYSQTFLTQCKACFWKQHWSYWRNPRYNAIRLFMTLAIGIIFGLIFWDK 1227
Query: 1223 GQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFS 1282
GQKT QQDL N+FGA+Y AV FLG+TNA V S+++ ERTVFYRERAAGMYS L YAF+
Sbjct: 1228 GQKTFSQQDLLNVFGAMYAAVLFLGATNAAGVQSIIAIERTVFYRERAAGMYSPLPYAFA 1287
Query: 1283 QVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPA 1342
QV IE IYVA QT+VY ++L+SMMGF W A +F WF Y + M F+ FTL+GMM+VALTPA
Sbjct: 1288 QVAIEAIYVAVQTIVYSILLFSMMGFEWTAAKFLWFYYFIFMCFVYFTLFGMMVVALTPA 1347
Query: 1343 PQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNV 1402
PQI AI FF S WNLFSGFL+PR QIPIWWRWYYW SPVAWTLYGLVTSQVGD +
Sbjct: 1348 PQIAAICMSFFTSFWNLFSGFLLPRPQIPIWWRWYYWCSPVAWTLYGLVTSQVGDKTNTI 1407
Query: 1403 EIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFTLAITLINFQRR 1458
+PG + + +K+ LK GF+YDFLP VA L W++ F F+F+ I +NFQ+R
Sbjct: 1408 SVPGESEDVPIKEFLKGYLGFEYDFLPAVAAAHLGWVVLFFFLFSYGIKFLNFQKR 1463
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147794195|emb|CAN77838.1| hypothetical protein VITISV_025837 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2234 bits (5790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1065/1451 (73%), Positives = 1233/1451 (84%), Gaps = 47/1451 (3%)
Query: 34 EVWKSSSNAFSRSQRDDDDEEELRWAAIERLPTYDRLRRGMLSQLGDDGKVVRREVNVKK 93
EVW + + F+RS R DD EEELRWAAIERLPTYDRLRRGML Q+ D+G+VV +V+V K
Sbjct: 27 EVWTAPPDVFNRSGRQDD-EEELRWAAIERLPTYDRLRRGMLRQVLDNGRVVTDDVDVTK 85
Query: 94 LGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIRYEHLNIQGEVHIGSR 153
LG+QD+KQL ESILK+VE+DN+KFL +LR+R DRVGI+ PKIE+RYE+L+I+G+V++GSR
Sbjct: 86 LGVQDKKQLMESILKVVEDDNEKFLXRLRDRTDRVGIETPKIEVRYENLSIEGDVYVGSR 145
Query: 154 AIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPS----------------- 196
A+PTL NA +N E VLG + + PSKKRKIQILKDVSG+VKP
Sbjct: 146 ALPTLLNATLNTIEAVLGLIHLAPSKKRKIQILKDVSGIVKPFKMVFIFCLAMAFTHHFL 205
Query: 197 -------RMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYI 249
RMTLLLGPP +GKTTLL+ALAGKLD DLK++GK+ YCGHE EF+PQRTCAYI
Sbjct: 206 IFDMVIFRMTLLLGPPSSGKTTLLLALAGKLDHDLKVSGKVTYCGHELDEFIPQRTCAYI 265
Query: 250 SQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALA 309
SQ+DLH GEMTVRET+DFSGRCLGVGTRYEMLAE+SRRE+EAGIKPDPEIDA+MKATA++
Sbjct: 266 SQHDLHHGEMTVRETLDFSGRCLGVGTRYEMLAELSRREREAGIKPDPEIDAFMKATAMS 325
Query: 310 GQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEIS 369
GQ+TSL TDYVLK+LGLDICAD MVGD MRRG+SGGQKKRVTTGEMLVGPAKVLLMDEIS
Sbjct: 326 GQETSLVTDYVLKILGLDICADIMVGDDMRRGISGGQKKRVTTGEMLVGPAKVLLMDEIS 385
Query: 370 TGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREK 429
+ F C QPAPE YDLFD+IILLS+GQIVYQGPRE
Sbjct: 386 YRVGQFHHFPDC-------------------QPAPETYDLFDDIILLSDGQIVYQGPREN 426
Query: 430 VLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVG 489
VLEFFEYMGF+CP+RKGVADFLQEVTSKKDQEQYW++++QPY + SV DFV+ F+SFHVG
Sbjct: 427 VLEFFEYMGFRCPERKGVADFLQEVTSKKDQEQYWYKRNQPYTHASVPDFVEAFNSFHVG 486
Query: 490 QQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQIT 549
QQL+ +L+VPYDK+RTHPAALV KYGISN +LF+ACF REWLLMKRNSFVYIFKT+QIT
Sbjct: 487 QQLSAELSVPYDKTRTHPAALVTEKYGISNYELFKACFAREWLLMKRNSFVYIFKTTQIT 546
Query: 550 IMSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRD 609
IMSLIALTVF RT+MP G +ADG KF+GALFFSLIN+MFNG+AELA TVFRLPVFFKQRD
Sbjct: 547 IMSLIALTVFLRTQMPHGTLADGGKFFGALFFSLINVMFNGMAELAMTVFRLPVFFKQRD 606
Query: 610 HLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMAL 669
LFYP WA+A+PI+VLRIPLS +ES IW+ LTYYTIGFAPAASR FRQ+LAFF ++ MAL
Sbjct: 607 FLFYPAWAFAMPIWVLRIPLSFMESGIWIILTYYTIGFAPAASRFFRQFLAFFGIHQMAL 666
Query: 670 SLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAI 729
SLFRFI ++GRT+VVANTLGTFTLL+VFVLGGF+I+K+DIEPFMIWGYY+SPMMYGQNAI
Sbjct: 667 SLFRFIAAVGRTQVVANTLGTFTLLMVFVLGGFIISKNDIEPFMIWGYYISPMMYGQNAI 726
Query: 730 VINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFI 789
V+NEFLD+RW+ P +D + +EPTVGK+LLKSRGFF YW+WIC+ AL F++LFN+LF+
Sbjct: 727 VMNEFLDKRWAAPNTDSRFNEPTVGKVLLKSRGFFVDEYWFWICVXALLAFSLLFNVLFV 786
Query: 790 AAIQFLNPLGKAKPTVI--EEDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGM 847
AA+ FLNPLG K ++ E+D +K K +SGQ TE TDM+V +SSE VG+ + PK+GM
Sbjct: 787 AALTFLNPLGDTKNAILNEEDDKNKNKASSGQHSTEGTDMAVINSSEIVGSAENAPKRGM 846
Query: 848 VLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGK 907
VLPFQPLSLAF HVNY VDMPAEMK+QG+EEDRLQLLRDVSG FRPG+LTAL+GVSGAGK
Sbjct: 847 VLPFQPLSLAFEHVNYFVDMPAEMKSQGVEEDRLQLLRDVSGAFRPGILTALVGVSGAGK 906
Query: 908 TTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAW 967
TTLMDVLAGRKTGGY EG ISISGYPKNQ TFARVSGYCEQNDIHSP+VTV+ESLL+SAW
Sbjct: 907 TTLMDVLAGRKTGGYIEGSISISGYPKNQKTFARVSGYCEQNDIHSPYVTVHESLLYSAW 966
Query: 968 LRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPS 1027
LRLSSD+D++TRKMFV+EVM+LVEL+PL +++VGLPGVDGLSTEQRKRLTIAVELVANPS
Sbjct: 967 LRLSSDVDTQTRKMFVEEVMELVELKPLRDSLVGLPGVDGLSTEQRKRLTIAVELVANPS 1026
Query: 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087
IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV
Sbjct: 1027 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1086
Query: 1088 IYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSS 1147
IYAGPLGR S KLVEYFEA+PGVP+I G NPATWML +S + EAQ+ VDFA+IY SS
Sbjct: 1087 IYAGPLGRHSHKLVEYFEAIPGVPKIKEGSNPATWMLVVSASSVEAQMEVDFAEIYANSS 1146
Query: 1148 LYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAV 1207
LYQRN+ELIKELSTP P S DLYFPT++SQPF QCKACFWKQ SYWR+PQYNA+RF +
Sbjct: 1147 LYQRNQELIKELSTPPPXSKDLYFPTEFSQPFSTQCKACFWKQHWSYWRNPQYNAIRFFM 1206
Query: 1208 TIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYR 1267
TIV+G LFG+IFW+KG++T KQQDL NL GA+Y AV FLG+TNA++V S+V+ ERTVFYR
Sbjct: 1207 TIVIGALFGVIFWNKGEQTTKQQDLMNLLGAMYAAVLFLGATNASAVQSIVAIERTVFYR 1266
Query: 1268 ERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFM 1327
ERAAGMYS L YAF+QV IE IYVA QT+VY L+LYSM+GF WK +F WF Y ++M F+
Sbjct: 1267 ERAAGMYSPLPYAFAQVSIEAIYVAIQTIVYTLLLYSMIGFDWKVGKFLWFYYYILMCFI 1326
Query: 1328 QFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTL 1387
FT+YGMM+VALTP QI AI+ FFLS WNLFSGFLIPR QIP+WWRWYYW SPVAWTL
Sbjct: 1327 YFTMYGMMVVALTPGHQIAAIVMSFFLSFWNLFSGFLIPRPQIPVWWRWYYWASPVAWTL 1386
Query: 1388 YGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFT 1447
YGLVTSQVGD +E+PGS + +K LK+S GF+YDFLP VAV +VW+ F FVF
Sbjct: 1387 YGLVTSQVGDKNALLEVPGS-GNVPLKLFLKESLGFEYDFLPAVAVAHVVWVALFFFVFA 1445
Query: 1448 LAITLINFQRR 1458
I +NFQRR
Sbjct: 1446 YGIRFLNFQRR 1456
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572530|ref|XP_003554421.1| PREDICTED: ABC transporter G family member 39-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2234 bits (5790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1040/1454 (71%), Positives = 1239/1454 (85%), Gaps = 24/1454 (1%)
Query: 7 GGDDIVRSLSMGSSAGNRSGRASSSFREVWKSSSNAFSRSQRD--DDDEEELRWAAIERL 64
GDD+ S S +R ++SFR+ W ++ + F+ S R +DDEEEL+WAAI+RL
Sbjct: 6 AGDDLAVSTS------SRRSWTTASFRDAWTAAPDVFNVSGRHVYEDDEEELKWAAIDRL 59
Query: 65 PTYDRLRRGMLSQLGDDGKVVRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLRER 124
PT++R+R+G+L + DDG V+ EV+V L + D+K L +SILK+VEEDN+KFLR+LR R
Sbjct: 60 PTFERMRKGVLKHVLDDGHVMLDEVDVSNLCLHDKKLLIDSILKIVEEDNEKFLRRLRNR 119
Query: 125 IDRVGIDIPKIEIRYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQ 184
+DRVGI+IPKIE+R E+L+++G+VH+GSRA+PTL NA +N E+VLG + PSKKR+IQ
Sbjct: 120 VDRVGIEIPKIEVRCENLSVEGDVHVGSRALPTLLNATLNAFESVLGMFHLAPSKKREIQ 179
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
ILKDVSG+VKPSRMTLLLGPP +GKTTLL+ALAGKLD DL+++G+I YCGHE EFVPQ+
Sbjct: 180 ILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGKLDRDLRVSGRITYCGHELNEFVPQK 239
Query: 245 TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMK 304
TCAYISQ+D+H+GEMTVRET+DFSGRCLGVGTRYE L E+SRRE+EAGIKPDPEIDA+MK
Sbjct: 240 TCAYISQHDIHYGEMTVRETLDFSGRCLGVGTRYEALVELSRREREAGIKPDPEIDAFMK 299
Query: 305 ATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLL 364
A AL+GQKT+L TDYVLK+LGLDICAD +VGD+MRRG+SGGQKKRVTTGEMLVGPAK L
Sbjct: 300 AIALSGQKTNLVTDYVLKILGLDICADIVVGDEMRRGISGGQKKRVTTGEMLVGPAKALF 359
Query: 365 MDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQ 424
MDEISTGLDSSTTFQICK+M+QMVHV+++T ++SLLQPAPE ++LFD+IILLSEGQIVYQ
Sbjct: 360 MDEISTGLDSSTTFQICKFMRQMVHVMDVTMVISLLQPAPETFELFDDIILLSEGQIVYQ 419
Query: 425 GPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFS 484
GPRE LEFFE+MGFKCP+RKGV DFLQEVTSKKDQ+QYW RKD+PYRY+SVS+FVQ FS
Sbjct: 420 GPRENGLEFFEHMGFKCPERKGVTDFLQEVTSKKDQQQYWSRKDEPYRYVSVSEFVQAFS 479
Query: 485 SFHVGQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFK 544
SF +G+QLA +L VPYDK + HPAALVK+KYGI+N +LF+ACF REWLLMKR+SFVYIFK
Sbjct: 480 SFDIGEQLATELGVPYDKRQAHPAALVKDKYGITNWELFKACFSREWLLMKRSSFVYIFK 539
Query: 545 TSQITIMSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVF 604
T+QITIMS+I TVF RTEM VG V DG KF+GALFFSLIN+MFNG+AEL+ TVFRLPVF
Sbjct: 540 TTQITIMSIITFTVFLRTEMSVGTVEDGQKFFGALFFSLINVMFNGMAELSMTVFRLPVF 599
Query: 605 FKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAV 664
+KQRD FYP WA+ LPI++LRIPLSI+ES IW+ LTYYTIGFAP+ASR RQ+LA FA+
Sbjct: 600 YKQRDFRFYPAWAFGLPIWLLRIPLSIMESGIWIALTYYTIGFAPSASRFIRQFLALFAI 659
Query: 665 NSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMY 724
+ MALSLFRF+ + GRT VVANTLGT +L LVFVLGGFVIAKDDIEP+M+WGYY+SPMMY
Sbjct: 660 HQMALSLFRFLAAAGRTLVVANTLGTLSLQLVFVLGGFVIAKDDIEPWMMWGYYLSPMMY 719
Query: 725 GQNAIVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILF 784
GQNAIV+NEFLD+RWSKP +DP+I+ PTVGK+LLKSRGF+T YW+WICIGAL GF++LF
Sbjct: 720 GQNAIVMNEFLDKRWSKPNTDPRINAPTVGKVLLKSRGFYTEEYWFWICIGALLGFSLLF 779
Query: 785 NILFIAAIQFLNPLGKAKPTVIEEDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHGPK 844
N+LFI A+ +LNPLG +K + + E TDM+V+ SSE + P+
Sbjct: 780 NLLFIVALTYLNPLGYSKAVIAD---------------EGTDMAVKESSEMASSLNQEPR 824
Query: 845 KGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSG 904
+GMVLPFQPLSLAF+H++Y VDMPAEM+++GI +DRLQLL+DVSG FRPG+LTAL+GVSG
Sbjct: 825 RGMVLPFQPLSLAFNHISYYVDMPAEMRSRGINKDRLQLLQDVSGAFRPGILTALVGVSG 884
Query: 905 AGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLF 964
AGKTTLMDVLAGRKTGGY EG ISISGYPKNQATFAR+SGYCEQNDIHSPHVTVYESLLF
Sbjct: 885 AGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDIHSPHVTVYESLLF 944
Query: 965 SAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVA 1024
SAWLRL SD++++ RKMFV+EVM+LVEL + +A+VGLPGVDGLSTEQRKRLTIAVELVA
Sbjct: 945 SAWLRLPSDVNAQKRKMFVEEVMELVELNQIRDALVGLPGVDGLSTEQRKRLTIAVELVA 1004
Query: 1025 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE+LLMKRG
Sbjct: 1005 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEILLMKRG 1064
Query: 1085 GQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFADIYV 1144
GQVIYAGPLGR S KL+EYFE +PGVP+I +GYNPA+WML+IS+ T EA L VDFA+IY
Sbjct: 1065 GQVIYAGPLGRHSHKLIEYFEGIPGVPKIKDGYNPASWMLDISSTTMEANLEVDFAEIYA 1124
Query: 1145 RSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALR 1204
+S+LY+RN+ELI+ELSTP P S DL+FPT+YSQ F +QCKA FWKQ SYWR PQYNA+R
Sbjct: 1125 KSTLYRRNQELIEELSTPVPDSKDLHFPTKYSQSFFVQCKANFWKQYWSYWRYPQYNAVR 1184
Query: 1205 FAVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTV 1264
F +TIVVG++FG+IFW+K +KT KQQDL NL G +Y A+ FLG+ NA+SV VV+ ERT+
Sbjct: 1185 FFMTIVVGVMFGVIFWNKAKKTHKQQDLMNLLGGMYAAMLFLGAMNASSVQPVVAIERTI 1244
Query: 1265 FYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMM 1324
FYRERAAGMYS L YAF QV IE IY A QT VY LILYSM+GF WKA FFWF Y ++M
Sbjct: 1245 FYRERAAGMYSALPYAFGQVAIEAIYNAIQTAVYSLILYSMIGFDWKATSFFWFYYYILM 1304
Query: 1325 SFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVA 1384
FM FTLYGMMIVALTP Q+ AI FFLS WNLFSGF+IPR QIP+WWRWYYW SPV+
Sbjct: 1305 CFMYFTLYGMMIVALTPGHQVAAICMSFFLSFWNLFSGFIIPRTQIPVWWRWYYWASPVS 1364
Query: 1385 WTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAFVF 1444
WTLYGL+TSQ+GD +EIPG+ +M +K+ LK + GF YDFLPVVA + W++ F+F
Sbjct: 1365 WTLYGLITSQLGDKNAELEIPGA-GSMGLKEFLKQNLGFDYDFLPVVAAAHVGWVILFMF 1423
Query: 1445 VFTLAITLINFQRR 1458
VF I +NFQRR
Sbjct: 1424 VFAYGIKFLNFQRR 1437
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486942|ref|XP_002265628.2| PREDICTED: pleiotropic drug resistance protein 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2234 bits (5788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1054/1451 (72%), Positives = 1229/1451 (84%), Gaps = 25/1451 (1%)
Query: 13 RSLSMGSSAGNRSGRASSSFREVWKSSSNAFSRSQRDDDDEEELRWAAIERLPTYDRLRR 72
RS S+GS G+R AS+S REV + + F R +DDEEEL+WAAIERLPT++RLR+
Sbjct: 17 RSKSLGS--GSRRSWASASIREVVSAQGDVFQ--SRREDDEEELKWAAIERLPTFERLRK 72
Query: 73 GMLSQLGDDGKVVRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDI 132
GML Q+ DDGKVV EV+ LGMQ+RK L ESILK+VEEDN+KFL +LRER DRVG++I
Sbjct: 73 GMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVGVEI 132
Query: 133 PKIEIRYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGL 192
PKIE+ +EHL+I+G+ ++G+RA+PTL N +N E +LG +R+ PSKKR ++ILKDVSG+
Sbjct: 133 PKIEVWFEHLSIEGDAYVGTRALPTLLNFTMNFIEGILGLIRLSPSKKRVVKILKDVSGI 192
Query: 193 VKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQN 252
VKPSRMTLLLGPP +GKTTLL ALAGK+D DL++ GKI YCGHE EFVPQRTCAYISQ+
Sbjct: 193 VKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYISQH 252
Query: 253 DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQK 312
DLH GEMTVRET+DFSGRCLGVGTRYE+LAE+SRREKEAGIKPDPEIDA+MKATA+AGQ+
Sbjct: 253 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKEAGIKPDPEIDAFMKATAMAGQE 312
Query: 313 TSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGL 372
TSL TDYVLK+LGLDICAD +VGD MRRG+SGG+KKRVT GEMLVGPAK L MDEISTGL
Sbjct: 313 TSLVTDYVLKILGLDICADIVVGDDMRRGISGGEKKRVTIGEMLVGPAKALFMDEISTGL 372
Query: 373 DSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLE 432
DSSTTFQ+ K+M+QMVH++E+T I+SLLQPAPE YDLFD IILL EGQIVYQGPRE +LE
Sbjct: 373 DSSTTFQVVKFMRQMVHIMEVTMIISLLQPAPETYDLFDGIILLCEGQIVYQGPRENILE 432
Query: 433 FFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQL 492
FFE +GFKCP+RKGVADFLQEVTS+KDQEQYWFRK++PYRYISV +FVQ F+SFH+GQ+L
Sbjct: 433 FFESIGFKCPERKGVADFLQEVTSRKDQEQYWFRKNEPYRYISVPEFVQHFNSFHIGQKL 492
Query: 493 ANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMS 552
++D +PYD+SRTHPAALV KYGISN +LF+ACF REWLLMKRNSF+YIFKT+QITIMS
Sbjct: 493 SDDFGIPYDRSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQITIMS 552
Query: 553 LIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLF 612
+IA+TVFFRTEM G + DG KFYGALF+SLIN+MFNGLAELA T+FRLPVFFKQRD LF
Sbjct: 553 VIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGLAELALTIFRLPVFFKQRDFLF 612
Query: 613 YPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLF 672
YP WA+ALPI+VLRIPLS++ES IW+ LTYYTIG+APAASR FRQ LAFF V+ MALSLF
Sbjct: 613 YPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGYAPAASRFFRQLLAFFVVHQMALSLF 672
Query: 673 RFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVIN 732
RFI ++GRT +VANTL TFTLLLV VLGGFV++KDDI+P+MIWGYY SPMMYGQNA+VIN
Sbjct: 673 RFIAALGRTLIVANTLATFTLLLVSVLGGFVVSKDDIKPWMIWGYYASPMMYGQNALVIN 732
Query: 733 EFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAI 792
EFLD+RWS P +I EPTVGK LLK+RG F YWYWI +GAL GF++LFNI FIAA+
Sbjct: 733 EFLDDRWSTPNIYTRIPEPTVGKALLKARGMFVDGYWYWISVGALLGFSLLFNICFIAAL 792
Query: 793 QFLNPLGKAKPTVIEEDGDKKKKASGQPGTEDTDMSVRSSSEN----VGTTGHG-PKKGM 847
+L+PLG +K +I+ E DM VR++ EN V H K+GM
Sbjct: 793 TYLDPLGDSKSVIID---------------EGIDMEVRNTRENTKAVVKDANHALTKRGM 837
Query: 848 VLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGK 907
VLPFQPLSLAF HVNY VDMPA MK+QG E D LQLLRD SG FRPG+L AL+GVSGAGK
Sbjct: 838 VLPFQPLSLAFEHVNYYVDMPAGMKSQGNEADHLQLLRDASGAFRPGILMALVGVSGAGK 897
Query: 908 TTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAW 967
TTLMDVLAGRKT GY EG ISISGYPKNQATFAR+SGYCEQ DIHSP+VTVYESL++SAW
Sbjct: 898 TTLMDVLAGRKTSGYIEGSISISGYPKNQATFARISGYCEQTDIHSPNVTVYESLVYSAW 957
Query: 968 LRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPS 1027
LRL+ D+ +TR++FV+EVMDLVEL PL NA+VGLPG+DGLSTEQRKRLT+AVELVANPS
Sbjct: 958 LRLAPDVKKETRQVFVEEVMDLVELHPLRNALVGLPGIDGLSTEQRKRLTVAVELVANPS 1017
Query: 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087
IIFMDEPT+GLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ+
Sbjct: 1018 IIFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQI 1077
Query: 1088 IYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSS 1147
IYAGPLGR S KLVEYFEAVPGVP++ +G NPATWMLEIS+ EAQL VDFA+IY +S
Sbjct: 1078 IYAGPLGRNSHKLVEYFEAVPGVPKVRDGQNPATWMLEISSAAVEAQLGVDFAEIYAKSE 1137
Query: 1148 LYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAV 1207
LYQRN+E IKELSTP+PGS DLYFPT+YSQ F+ QCKACFWKQ SYWR+P YNALRF +
Sbjct: 1138 LYQRNQEFIKELSTPSPGSKDLYFPTKYSQSFITQCKACFWKQHWSYWRNPPYNALRFFL 1197
Query: 1208 TIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYR 1267
TI++G+LFGLIFW++G++T K+QDL NL GA++ AVFFLG+TNA SV +V+ ERTVFYR
Sbjct: 1198 TIIIGVLFGLIFWNEGEQTDKEQDLINLLGAMFAAVFFLGATNAASVQPIVAIERTVFYR 1257
Query: 1268 ERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFM 1327
ERAAGMYS L YAF+QV IE IY+ QT VY L+LYSM+GF W+ +F WF Y ++M F+
Sbjct: 1258 ERAAGMYSALPYAFAQVAIEAIYITIQTFVYTLLLYSMIGFYWRVDKFLWFYYYLLMCFI 1317
Query: 1328 QFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTL 1387
FTLYGMMIVALTP QI AIL FFLS WNLFSGFLIPR QIPIWWRWYYW SPVAWT+
Sbjct: 1318 YFTLYGMMIVALTPNHQIAAILMSFFLSFWNLFSGFLIPRTQIPIWWRWYYWASPVAWTI 1377
Query: 1388 YGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFT 1447
YGLVTSQVGD E V++PG+ M+VKQ LK++ GF+YDFL VA+ + W+L F+FVF
Sbjct: 1378 YGLVTSQVGDKEDPVQVPGAD-DMSVKQYLKEALGFEYDFLRAVALAHIGWVLLFLFVFA 1436
Query: 1448 LAITLINFQRR 1458
I INFQRR
Sbjct: 1437 YGIKFINFQRR 1447
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486907|ref|XP_002267345.2| PREDICTED: pleiotropic drug resistance protein 2-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2230 bits (5778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1040/1440 (72%), Positives = 1233/1440 (85%), Gaps = 13/1440 (0%)
Query: 20 SAGNRSGRASSSFREVWKSSSNAFSRSQRDDDDEEELRWAAIERLPTYDRLRRGMLSQLG 79
++G+R AS+S EV + + F R +DDEEEL+WAAIERLPT++RLR+GML Q+
Sbjct: 22 ASGSRRSWASASILEVLSAQGDVFQ--SRREDDEEELKWAAIERLPTFERLRKGMLKQVL 79
Query: 80 DDGKVVRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIRY 139
DDGKVV EV+ LGMQ+RK L ESILK+VEEDN+KFL +LRER DRVG++IPKIE+R+
Sbjct: 80 DDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVGVEIPKIEVRF 139
Query: 140 EHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMT 199
EHL+++G+ ++G+RA+PTL N+ +N E +LG +R+ SKKR ++ILKDVSG+VKPSRMT
Sbjct: 140 EHLSVEGDAYVGTRALPTLLNSTMNFIEGILGLIRLSSSKKRVVKILKDVSGIVKPSRMT 199
Query: 200 LLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEM 259
LLLGPP +GKTTLL ALAGK+D DL++ GKI YCGHE EFVPQRTCAYISQ+DLH GEM
Sbjct: 200 LLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYISQHDLHHGEM 259
Query: 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDY 319
TVRET+DFSGRCLGVGTRYE+LAE+SRREKE+ IKPDPEIDA+MKATA+AGQ+TSL TDY
Sbjct: 260 TVRETLDFSGRCLGVGTRYELLAELSRREKESAIKPDPEIDAFMKATAMAGQETSLVTDY 319
Query: 320 VLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQ 379
VLK+LGLDICAD ++GD MRRG+SGG+KKRVTTGEMLVGPAK L MDEISTGLDSSTTFQ
Sbjct: 320 VLKMLGLDICADIVLGDDMRRGISGGEKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQ 379
Query: 380 ICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGF 439
I K+M+QMVH++E+T I+SLLQPAPE YDLFD IILL EGQIVYQGPRE +LEFFE +GF
Sbjct: 380 IVKFMRQMVHIMEVTMIISLLQPAPETYDLFDAIILLCEGQIVYQGPRENILEFFESVGF 439
Query: 440 KCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVP 499
KCP RKGVADFLQEVTS+K+QEQYWFR ++PY+YISV +F Q F+SFH+GQ+L++DL +P
Sbjct: 440 KCPKRKGVADFLQEVTSRKEQEQYWFRHNEPYKYISVPEFAQHFNSFHIGQKLSDDLGIP 499
Query: 500 YDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVF 559
Y+KSRTHPAALV KYGISN +LF+ACF REWLLMKRNSF+YIFKT+QITIMS+IA+TVF
Sbjct: 500 YNKSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQITIMSVIAMTVF 559
Query: 560 FRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYA 619
FRTEM G + DG KFYGALF+SLIN+MFNG+AELA T+FRLPVFFKQRD LFYP WA+A
Sbjct: 560 FRTEMKHGQLQDGVKFYGALFYSLINVMFNGMAELALTLFRLPVFFKQRDFLFYPAWAFA 619
Query: 620 LPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIG 679
LPI+VLRIPLS++ES IW+ LTYYTIGFAP+ASR FRQ LAFF V+ MALSLFRFI ++G
Sbjct: 620 LPIWVLRIPLSLMESGIWIILTYYTIGFAPSASRFFRQLLAFFGVHQMALSLFRFIAALG 679
Query: 680 RTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERW 739
RT++VANTLGTFTLLLVFVLGGF++AKDDIEP+MIWGYY SPM YGQNA+VINEFLD+RW
Sbjct: 680 RTQIVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYASPMTYGQNALVINEFLDDRW 739
Query: 740 SKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLG 799
S P D +I EPTVGK LLK+RG F YWYWIC+GAL GF++LFNI FI A+ +L+PLG
Sbjct: 740 SAPNIDQRIPEPTVGKALLKARGMFVDGYWYWICVGALMGFSLLFNICFIVALTYLDPLG 799
Query: 800 KAKPTVIEEDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHGP-KKGMVLPFQPLSLAF 858
+K +I+E+ ++K + Q E T V+ ++ H P K+GMVLPFQPLSLAF
Sbjct: 800 DSKSVIIDEENEEKSEK--QKTRESTKSVVKDAN-------HTPTKRGMVLPFQPLSLAF 850
Query: 859 HHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK 918
HVNY VDMPA MK+QGIE DRLQLLRD SG FRPG+ AL+GVSGAGKTTLMDVLAGRK
Sbjct: 851 EHVNYYVDMPAGMKSQGIEADRLQLLRDASGAFRPGIQIALVGVSGAGKTTLMDVLAGRK 910
Query: 919 TGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKT 978
TGGY EG ISISGYPKNQATFAR+SGYCEQNDIHSP+VTVYESL++SAWLRL+ D+ +T
Sbjct: 911 TGGYIEGSISISGYPKNQATFARISGYCEQNDIHSPNVTVYESLVYSAWLRLAPDVKKET 970
Query: 979 RKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
R++FV+EVM+LVEL PL +A+VGLPG+ GLSTEQRKRLT+AVELVANPSI+FMDEPT+GL
Sbjct: 971 RQVFVEEVMELVELHPLRDALVGLPGIHGLSTEQRKRLTVAVELVANPSILFMDEPTTGL 1030
Query: 1039 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQ 1098
DARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ+IYAG LGR S
Sbjct: 1031 DARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQIIYAGALGRNSH 1090
Query: 1099 KLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSSLYQRNEELIKE 1158
KLVEYFEAVPGVP++ +G NPATWMLEIS+ EAQL VDFA+IY +S LYQRN+ELIKE
Sbjct: 1091 KLVEYFEAVPGVPKVRDGQNPATWMLEISSAAVEAQLGVDFAEIYAKSELYQRNQELIKE 1150
Query: 1159 LSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLI 1218
LSTP+PGS DLYFPT+YSQ F+ QCKACFWKQ SYWR+P YNA+RF +TI++G+LFG+I
Sbjct: 1151 LSTPSPGSKDLYFPTKYSQSFISQCKACFWKQHWSYWRNPPYNAIRFFLTIIIGVLFGVI 1210
Query: 1219 FWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLA 1278
FW+KG+KT K+QDL NL GA++ AVFFLG+TN +SV VV+ ERTVFYRERAAGMYS L
Sbjct: 1211 FWNKGEKTDKEQDLINLLGAMFSAVFFLGATNTSSVQPVVAIERTVFYRERAAGMYSALP 1270
Query: 1279 YAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVA 1338
YAF+QV IE IYVA QT+VY L+LYSMMGF W+ +F WF Y ++M F+ FTLYGMMIVA
Sbjct: 1271 YAFAQVAIEAIYVAIQTLVYSLLLYSMMGFYWRVDKFLWFYYYLLMCFIYFTLYGMMIVA 1330
Query: 1339 LTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDI 1398
LTP QI AI+ FFLS WNLF+GFLIPR+QIPIWWRWYYW SPV+WT+YGLVTSQVGD
Sbjct: 1331 LTPNHQIAAIVMSFFLSFWNLFAGFLIPRMQIPIWWRWYYWASPVSWTIYGLVTSQVGDK 1390
Query: 1399 EGNVEIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFTLAITLINFQRR 1458
E V++PG+ +VK LK++ GF+YDFL VA+ + W+L F+FVF I +NFQRR
Sbjct: 1391 EDPVQVPGA-GVKSVKLYLKEALGFEYDFLGAVALAHIGWVLLFLFVFAYGIKFLNFQRR 1449
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486909|ref|XP_003633487.1| PREDICTED: pleiotropic drug resistance protein 2-like isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2222 bits (5759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1037/1440 (72%), Positives = 1226/1440 (85%), Gaps = 25/1440 (1%)
Query: 20 SAGNRSGRASSSFREVWKSSSNAFSRSQRDDDDEEELRWAAIERLPTYDRLRRGMLSQLG 79
++G+R AS+S EV + + F R +DDEEEL+WAAIERLPT++RLR+GML Q+
Sbjct: 22 ASGSRRSWASASILEVLSAQGDVFQ--SRREDDEEELKWAAIERLPTFERLRKGMLKQVL 79
Query: 80 DDGKVVRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIRY 139
DDGKVV EV+ LGMQ+RK L ESILK+VEEDN+KFL +LRER DRVG++IPKIE+R+
Sbjct: 80 DDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVGVEIPKIEVRF 139
Query: 140 EHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMT 199
EHL+++G+ ++G+RA+PTL N+ +N E +LG +R+ SKKR ++ILKDVSG+VKPSRMT
Sbjct: 140 EHLSVEGDAYVGTRALPTLLNSTMNFIEGILGLIRLSSSKKRVVKILKDVSGIVKPSRMT 199
Query: 200 LLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEM 259
LLLGPP +GKTTLL ALAGK+D DL++ GKI YCGHE EFVPQRTCAYISQ+DLH GEM
Sbjct: 200 LLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYISQHDLHHGEM 259
Query: 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDY 319
TVRET+DFSGRCLGVGTRYE+LAE+SRREKE+ IKPDPEIDA+MKATA+AGQ+TSL TDY
Sbjct: 260 TVRETLDFSGRCLGVGTRYELLAELSRREKESAIKPDPEIDAFMKATAMAGQETSLVTDY 319
Query: 320 VLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQ 379
VLK+LGLDICAD ++GD MRRG+SGG+KKRVTTGEMLVGPAK L MDEISTGLDSSTTFQ
Sbjct: 320 VLKMLGLDICADIVLGDDMRRGISGGEKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQ 379
Query: 380 ICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGF 439
I K+M+QMVH++E+T I+SLLQPAPE YDLFD IILL EGQIVYQGPRE +LEFFE +GF
Sbjct: 380 IVKFMRQMVHIMEVTMIISLLQPAPETYDLFDAIILLCEGQIVYQGPRENILEFFESVGF 439
Query: 440 KCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVP 499
KCP RKGVADFLQEVTS+K+QEQYWFR ++PY+YISV +F Q F+SFH+GQ+L++DL +P
Sbjct: 440 KCPKRKGVADFLQEVTSRKEQEQYWFRHNEPYKYISVPEFAQHFNSFHIGQKLSDDLGIP 499
Query: 500 YDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVF 559
Y+KSRTHPAALV KYGISN +LF+ACF REWLLMKRNSF+YIFKT+QITIMS+IA+TVF
Sbjct: 500 YNKSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQITIMSVIAMTVF 559
Query: 560 FRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYA 619
FRTEM G + DG KFYGALF+SLIN+MFNG+AELA T+FRLPVFFKQRD LFYP WA+A
Sbjct: 560 FRTEMKHGQLQDGVKFYGALFYSLINVMFNGMAELALTLFRLPVFFKQRDFLFYPAWAFA 619
Query: 620 LPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIG 679
LPI+VLRIPLS++ES IW+ LTYYTIGFAP+ASR FRQ LAFF V+ MALSLFRFI ++G
Sbjct: 620 LPIWVLRIPLSLMESGIWIILTYYTIGFAPSASRFFRQLLAFFGVHQMALSLFRFIAALG 679
Query: 680 RTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERW 739
RT++VANTLGTFTLLLVFVLGGF++AKDDIEP+MIWGYY SPM YGQNA+VINEFLD+RW
Sbjct: 680 RTQIVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYASPMTYGQNALVINEFLDDRW 739
Query: 740 SKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLG 799
S P D +I EPTVGK LLK+RG F YWYWIC+GAL GF++LFNI FI A+ +L+PLG
Sbjct: 740 SAPNIDQRIPEPTVGKALLKARGMFVDGYWYWICVGALMGFSLLFNICFIVALTYLDPLG 799
Query: 800 KAKPTVIEEDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHGP-KKGMVLPFQPLSLAF 858
+K +I+E+ ++K V H P K+GMVLPFQPLSLAF
Sbjct: 800 DSKSVIIDEENEEKI---------------------VKDANHTPTKRGMVLPFQPLSLAF 838
Query: 859 HHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK 918
HVNY VDMPA MK+QGIE DRLQLLRD SG FRPG+ AL+GVSGAGKTTLMDVLAGRK
Sbjct: 839 EHVNYYVDMPAGMKSQGIEADRLQLLRDASGAFRPGIQIALVGVSGAGKTTLMDVLAGRK 898
Query: 919 TGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKT 978
TGGY EG ISISGYPKNQATFAR+SGYCEQNDIHSP+VTVYESL++SAWLRL+ D+ +T
Sbjct: 899 TGGYIEGSISISGYPKNQATFARISGYCEQNDIHSPNVTVYESLVYSAWLRLAPDVKKET 958
Query: 979 RKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
R++FV+EVM+LVEL PL +A+VGLPG+ GLSTEQRKRLT+AVELVANPSI+FMDEPT+GL
Sbjct: 959 RQVFVEEVMELVELHPLRDALVGLPGIHGLSTEQRKRLTVAVELVANPSILFMDEPTTGL 1018
Query: 1039 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQ 1098
DARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ+IYAG LGR S
Sbjct: 1019 DARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQIIYAGALGRNSH 1078
Query: 1099 KLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSSLYQRNEELIKE 1158
KLVEYFEAVPGVP++ +G NPATWMLEIS+ EAQL VDFA+IY +S LYQRN+ELIKE
Sbjct: 1079 KLVEYFEAVPGVPKVRDGQNPATWMLEISSAAVEAQLGVDFAEIYAKSELYQRNQELIKE 1138
Query: 1159 LSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLI 1218
LSTP+PGS DLYFPT+YSQ F+ QCKACFWKQ SYWR+P YNA+RF +TI++G+LFG+I
Sbjct: 1139 LSTPSPGSKDLYFPTKYSQSFISQCKACFWKQHWSYWRNPPYNAIRFFLTIIIGVLFGVI 1198
Query: 1219 FWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLA 1278
FW+KG+KT K+QDL NL GA++ AVFFLG+TN +SV VV+ ERTVFYRERAAGMYS L
Sbjct: 1199 FWNKGEKTDKEQDLINLLGAMFSAVFFLGATNTSSVQPVVAIERTVFYRERAAGMYSALP 1258
Query: 1279 YAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVA 1338
YAF+QV IE IYVA QT+VY L+LYSMMGF W+ +F WF Y ++M F+ FTLYGMMIVA
Sbjct: 1259 YAFAQVAIEAIYVAIQTLVYSLLLYSMMGFYWRVDKFLWFYYYLLMCFIYFTLYGMMIVA 1318
Query: 1339 LTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDI 1398
LTP QI AI+ FFLS WNLF+GFLIPR+QIPIWWRWYYW SPV+WT+YGLVTSQVGD
Sbjct: 1319 LTPNHQIAAIVMSFFLSFWNLFAGFLIPRMQIPIWWRWYYWASPVSWTIYGLVTSQVGDK 1378
Query: 1399 EGNVEIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFTLAITLINFQRR 1458
E V++PG+ +VK LK++ GF+YDFL VA+ + W+L F+FVF I +NFQRR
Sbjct: 1379 EDPVQVPGA-GVKSVKLYLKEALGFEYDFLGAVALAHIGWVLLFLFVFAYGIKFLNFQRR 1437
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486905|ref|XP_003633486.1| PREDICTED: pleiotropic drug resistance protein 2-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2220 bits (5752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1036/1440 (71%), Positives = 1227/1440 (85%), Gaps = 20/1440 (1%)
Query: 20 SAGNRSGRASSSFREVWKSSSNAFSRSQRDDDDEEELRWAAIERLPTYDRLRRGMLSQLG 79
++G+R AS+S EV + + F R +DDEEEL+WAAIERLPT++RLR+GML Q+
Sbjct: 22 ASGSRRSWASASILEVLSAQGDVFQ--SRREDDEEELKWAAIERLPTFERLRKGMLKQVL 79
Query: 80 DDGKVVRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIRY 139
DDGKVV EV+ LGMQ+RK L ESILK+VEEDN+KFL +LRER DRVG++IPKIE+R+
Sbjct: 80 DDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVGVEIPKIEVRF 139
Query: 140 EHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMT 199
EHL+++G+ ++G+RA+PTL N+ +N E +LG +R+ SKKR ++ILKDVSG+VKPSRMT
Sbjct: 140 EHLSVEGDAYVGTRALPTLLNSTMNFIEGILGLIRLSSSKKRVVKILKDVSGIVKPSRMT 199
Query: 200 LLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEM 259
LLLGPP +GKTTLL ALAGK+D DL++ GKI YCGHE EFVPQRTCAYISQ+DLH GEM
Sbjct: 200 LLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYISQHDLHHGEM 259
Query: 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDY 319
TVRET+DFSGRCLGVGTRYE+LAE+SRREKE+ IKPDPEIDA+MKATA+AGQ+TSL TDY
Sbjct: 260 TVRETLDFSGRCLGVGTRYELLAELSRREKESAIKPDPEIDAFMKATAMAGQETSLVTDY 319
Query: 320 VLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQ 379
VLK+LGLDICAD ++GD MRRG+SGG+KKRVTTGEMLVGPAK L MDEISTGLDSSTTFQ
Sbjct: 320 VLKMLGLDICADIVLGDDMRRGISGGEKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQ 379
Query: 380 ICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGF 439
I K+M+QMVH++E+T I+SLLQPAPE YDLFD IILL EGQIVYQGPRE +LEFFE +GF
Sbjct: 380 IVKFMRQMVHIMEVTMIISLLQPAPETYDLFDAIILLCEGQIVYQGPRENILEFFESVGF 439
Query: 440 KCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVP 499
KCP RKGVADFLQEVTS+K+QEQYWFR ++PY+YISV +F Q F+SFH+GQ+L++DL +P
Sbjct: 440 KCPKRKGVADFLQEVTSRKEQEQYWFRHNEPYKYISVPEFAQHFNSFHIGQKLSDDLGIP 499
Query: 500 YDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVF 559
Y+KSRTHPAALV KYGISN +LF+ACF REWLLMKRNSF+YIFKT+QITIMS+IA+TVF
Sbjct: 500 YNKSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQITIMSVIAMTVF 559
Query: 560 FRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYA 619
FRTEM G + DG KFYGALF+SLIN+MFNG+AELA T+FRLPVFFKQRD LFYP WA+A
Sbjct: 560 FRTEMKHGQLQDGVKFYGALFYSLINVMFNGMAELALTLFRLPVFFKQRDFLFYPAWAFA 619
Query: 620 LPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIG 679
LPI+VLRIPLS++ES IW+ LTYYTIGFAP+ASR FRQ LAFF V+ MALSLFRFI ++G
Sbjct: 620 LPIWVLRIPLSLMESGIWIILTYYTIGFAPSASRFFRQLLAFFGVHQMALSLFRFIAALG 679
Query: 680 RTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERW 739
RT++VANTLGTFTLLLVFVLGGF++AKDDIEP+MIWGYY SPM YGQNA+VINEFLD+RW
Sbjct: 680 RTQIVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYASPMTYGQNALVINEFLDDRW 739
Query: 740 SKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLG 799
S +I EPTVGK LLK+RG F YWYWIC+GAL GF++LFNI FI A+ +L+PLG
Sbjct: 740 SA----VRIPEPTVGKALLKARGMFVDGYWYWICVGALMGFSLLFNICFIVALTYLDPLG 795
Query: 800 KAKPTVIEEDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHGP-KKGMVLPFQPLSLAF 858
+K +I+E+ ++K + S+ V H P K+GMVLPFQPLSLAF
Sbjct: 796 DSKSVIIDEENEEKSEKQ------------ESTKSVVKDANHTPTKRGMVLPFQPLSLAF 843
Query: 859 HHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK 918
HVNY VDMPA MK+QGIE DRLQLLRD SG FRPG+ AL+GVSGAGKTTLMDVLAGRK
Sbjct: 844 EHVNYYVDMPAGMKSQGIEADRLQLLRDASGAFRPGIQIALVGVSGAGKTTLMDVLAGRK 903
Query: 919 TGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKT 978
TGGY EG ISISGYPKNQATFAR+SGYCEQNDIHSP+VTVYESL++SAWLRL+ D+ +T
Sbjct: 904 TGGYIEGSISISGYPKNQATFARISGYCEQNDIHSPNVTVYESLVYSAWLRLAPDVKKET 963
Query: 979 RKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
R++FV+EVM+LVEL PL +A+VGLPG+ GLSTEQRKRLT+AVELVANPSI+FMDEPT+GL
Sbjct: 964 RQVFVEEVMELVELHPLRDALVGLPGIHGLSTEQRKRLTVAVELVANPSILFMDEPTTGL 1023
Query: 1039 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQ 1098
DARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ+IYAG LGR S
Sbjct: 1024 DARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQIIYAGALGRNSH 1083
Query: 1099 KLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSSLYQRNEELIKE 1158
KLVEYFEAVPGVP++ +G NPATWMLEIS+ EAQL VDFA+IY +S LYQRN+ELIKE
Sbjct: 1084 KLVEYFEAVPGVPKVRDGQNPATWMLEISSAAVEAQLGVDFAEIYAKSELYQRNQELIKE 1143
Query: 1159 LSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLI 1218
LSTP+PGS DLYFPT+YSQ F+ QCKACFWKQ SYWR+P YNA+RF +TI++G+LFG+I
Sbjct: 1144 LSTPSPGSKDLYFPTKYSQSFISQCKACFWKQHWSYWRNPPYNAIRFFLTIIIGVLFGVI 1203
Query: 1219 FWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLA 1278
FW+KG+KT K+QDL NL GA++ AVFFLG+TN +SV VV+ ERTVFYRERAAGMYS L
Sbjct: 1204 FWNKGEKTDKEQDLINLLGAMFSAVFFLGATNTSSVQPVVAIERTVFYRERAAGMYSALP 1263
Query: 1279 YAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVA 1338
YAF+QV IE IYVA QT+VY L+LYSMMGF W+ +F WF Y ++M F+ FTLYGMMIVA
Sbjct: 1264 YAFAQVAIEAIYVAIQTLVYSLLLYSMMGFYWRVDKFLWFYYYLLMCFIYFTLYGMMIVA 1323
Query: 1339 LTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDI 1398
LTP QI AI+ FFLS WNLF+GFLIPR+QIPIWWRWYYW SPV+WT+YGLVTSQVGD
Sbjct: 1324 LTPNHQIAAIVMSFFLSFWNLFAGFLIPRMQIPIWWRWYYWASPVSWTIYGLVTSQVGDK 1383
Query: 1399 EGNVEIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFTLAITLINFQRR 1458
E V++PG+ +VK LK++ GF+YDFL VA+ + W+L F+FVF I +NFQRR
Sbjct: 1384 EDPVQVPGA-GVKSVKLYLKEALGFEYDFLGAVALAHIGWVLLFLFVFAYGIKFLNFQRR 1442
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740081|emb|CBI30263.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2219 bits (5749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1039/1357 (76%), Positives = 1203/1357 (88%), Gaps = 3/1357 (0%)
Query: 104 ESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIRYEHLNIQGEVHIGSRAIPTLPNAVI 163
ESILK+VE+DN+KFL +LR+R DRVGI+ PKIE+RY++L+I+G+V++GSRA+PTL NA +
Sbjct: 2 ESILKVVEDDNEKFLHRLRDRTDRVGIETPKIEVRYQNLSIEGDVYVGSRALPTLLNATL 61
Query: 164 NIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD 223
N E VLG + + PSKKRKIQILKDVSG+VKPSRMTLLLGPP +GKTTLL+ALAGKLD D
Sbjct: 62 NTIEAVLGLIHLAPSKKRKIQILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGKLDHD 121
Query: 224 LKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAE 283
LK++GK+ YCGHE EF+PQRTCAYISQ+DLH GEMTVRET+DFSGRCLGVGTRYEMLAE
Sbjct: 122 LKVSGKVTYCGHELDEFIPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYEMLAE 181
Query: 284 ISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVS 343
+SRRE+EAGIKPDPEIDA+MKATA++GQ+TSL TDYVLK+LGLDICAD MVGD MRRG+S
Sbjct: 182 LSRREREAGIKPDPEIDAFMKATAMSGQETSLVTDYVLKILGLDICADIMVGDDMRRGIS 241
Query: 344 GGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPA 403
GGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQI K+M+QMVH++++T I+SLLQPA
Sbjct: 242 GGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQIVKFMRQMVHIMDVTMIISLLQPA 301
Query: 404 PEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQY 463
PE YDLFD+IILLS+GQIVYQGPRE VLEFFEYMGF+CP+RKGVADFLQEVTSKKDQEQY
Sbjct: 302 PETYDLFDDIILLSDGQIVYQGPRENVLEFFEYMGFRCPERKGVADFLQEVTSKKDQEQY 361
Query: 464 WFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLF 523
W++++QPY + SV DFV+ F+SFHVGQQL+ +L+VPYDK+RTHPAALV KYGISN +LF
Sbjct: 362 WYKRNQPYTHASVPDFVEAFNSFHVGQQLSAELSVPYDKTRTHPAALVTEKYGISNYELF 421
Query: 524 RACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYGALFFSL 583
+ACF REWLLMKRNSFVYIFKT+QITIMSLIALTVF RT+MP G +ADG KF+GALFFSL
Sbjct: 422 KACFAREWLLMKRNSFVYIFKTTQITIMSLIALTVFLRTQMPHGTLADGGKFFGALFFSL 481
Query: 584 INLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYY 643
IN+MFNG+AELA TVFRLPVFFKQRD LFYP WA+ALPI+VLRIPLS +ES IW+ LTYY
Sbjct: 482 INVMFNGMAELAMTVFRLPVFFKQRDFLFYPAWAFALPIWVLRIPLSFMESGIWIILTYY 541
Query: 644 TIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFV 703
TIGFAPAASR FRQ+LAFF ++ MALSLFRFI ++GRT+VVANTLGTFTLL+VFVLGGF+
Sbjct: 542 TIGFAPAASRFFRQFLAFFGIHQMALSLFRFIAAVGRTQVVANTLGTFTLLMVFVLGGFI 601
Query: 704 IAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGF 763
I+K+DIEPFMIWGYY+SPMMYGQNAIV+NEFLD+RW+ P +D + +EPTVGK+LLKSRGF
Sbjct: 602 ISKNDIEPFMIWGYYISPMMYGQNAIVMNEFLDKRWAAPNTDSRFNEPTVGKVLLKSRGF 661
Query: 764 FTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVI--EEDGDKKKKASGQPG 821
F YW+WIC+ AL F++LFN+LF+AA+ FLNPLG K ++ E+D +K K +SGQ
Sbjct: 662 FVDEYWFWICVVALLAFSLLFNVLFVAALTFLNPLGDTKNAILNEEDDKNKNKASSGQHS 721
Query: 822 TEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRL 881
TE TDM+V +SSE VG+ + PK+GMVLPFQPLSLAF HVNY VDMPAEMK+QG+EEDRL
Sbjct: 722 TEGTDMAVINSSEIVGSAENAPKRGMVLPFQPLSLAFEHVNYFVDMPAEMKSQGVEEDRL 781
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR 941
QLLRDVSG FRPG+LTAL+GVSGAGKTTLMDVLAGRKTGGY EG ISISGYPKNQ TFAR
Sbjct: 782 QLLRDVSGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQKTFAR 841
Query: 942 VSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001
VSGYCEQNDIHSP+VTV+ESLL+SAWLRLSSD+D++TRKMFV+EVM+LVEL+PL +++VG
Sbjct: 842 VSGYCEQNDIHSPYVTVHESLLYSAWLRLSSDVDTQTRKMFVEEVMELVELKPLRDSLVG 901
Query: 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 902 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 961
Query: 1062 CTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPAT 1121
CTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGR S KLVEYFEA+PGVP+I G NPAT
Sbjct: 962 CTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRHSHKLVEYFEAIPGVPKIKEGSNPAT 1021
Query: 1122 WMLEISTPTAEAQLNVDFADIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLI 1181
WML +S + EAQ+ VDFA+IY SSLYQRN+ELIKELSTP P S DLYFPT++SQPF
Sbjct: 1022 WMLVVSASSVEAQMEVDFAEIYANSSLYQRNQELIKELSTPPPASKDLYFPTEFSQPFST 1081
Query: 1182 QCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYC 1241
QCKACFWKQ SYWR+PQYNA+RF +TIV+G LFG+IFW+KG++T KQQDL NL GA+Y
Sbjct: 1082 QCKACFWKQHWSYWRNPQYNAIRFFMTIVIGALFGVIFWNKGEQTTKQQDLMNLLGAMYA 1141
Query: 1242 AVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLI 1301
AV FLG+TNA++V S+V+ ERTVFYRERAAGMYS L YAF+QV IE IYVA QT+VY L+
Sbjct: 1142 AVLFLGATNASAVQSIVAIERTVFYRERAAGMYSPLPYAFAQVSIEAIYVAIQTIVYTLL 1201
Query: 1302 LYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFS 1361
LYSM+GF WK +F WF Y ++M F+ FT+YGMM+VALTP QI AI+ FFLS WNLFS
Sbjct: 1202 LYSMIGFDWKVGKFLWFYYYILMCFIYFTMYGMMVVALTPGHQIAAIVMSFFLSFWNLFS 1261
Query: 1362 GFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSF 1421
GFLIPR QIP+WWRWYYW SPVAWTLYGLVTSQVGD +E+PGS + +K LK+S
Sbjct: 1262 GFLIPRPQIPVWWRWYYWASPVAWTLYGLVTSQVGDKNALLEVPGS-GNVPLKLFLKESL 1320
Query: 1422 GFKYDFLPVVAVVKLVWLLAFVFVFTLAITLINFQRR 1458
GF+YDFLP VAV +VW+ F FVF I +NFQRR
Sbjct: 1321 GFEYDFLPAVAVAHVVWVALFFFVFAYGIRFLNFQRR 1357
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1458 | ||||||
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.973 | 0.976 | 0.691 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.972 | 0.975 | 0.679 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.927 | 0.950 | 0.582 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.972 | 0.965 | 0.558 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.967 | 0.978 | 0.555 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.969 | 0.995 | 0.530 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.951 | 0.957 | 0.499 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.965 | 0.996 | 0.488 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.528 | 0.544 | 0.529 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.529 | 0.541 | 0.477 | 0.0 |
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5270 (1860.2 bits), Expect = 0., P = 0.
Identities = 988/1428 (69%), Positives = 1164/1428 (81%)
Query: 32 FREVWKS-SSNAFSRSQRXXXXXXXLRWAAIERLPTYDRLRRGMLSQLGDDGKVVRREVN 90
FR+V+ + + F RS R LRWAA+ERLPTYDRLR+GML Q +GK+ +V+
Sbjct: 34 FRDVFAPPTDDVFGRSDRREEDDVELRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVD 93
Query: 91 VKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIRYEHLNIQGEVHI 150
V L +++K L E ILK VEEDN+KFLR+LRER DRVGI++PKIE+RYE+L+++G+V
Sbjct: 94 VTNLAPKEKKHLMEMILKFVEEDNEKFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRS 153
Query: 151 GSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKT 210
SRA+PTL N +N E++LG +LPSKKRKI+ILKD+SG++KPSRMTLLLGPP +GKT
Sbjct: 154 ASRALPTLFNVTLNTIESILGLFHLLPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKT 213
Query: 211 TXXXXXXXXXXXXXXXXXXIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGR 270
T I YCGHEF+EFVPQ+TCAYISQ+DLHFGEMTVRE++DFSGR
Sbjct: 214 TLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGR 273
Query: 271 CLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICA 330
CLGVGTRY++L E+SRRE+EAGIKPDPEIDA+MK+ A++GQ+TSL TDYVLKLLGLDICA
Sbjct: 274 CLGVGTRYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICA 333
Query: 331 DTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHV 390
DT+VGD MRRG+SGGQ+KR+TTGEMLVGPA L MDEISTGLDSSTTFQICK+M+Q+VH+
Sbjct: 334 DTLVGDVMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHI 393
Query: 391 LEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADF 450
++T ++SLLQPAPE ++LFD+IILLSEGQIVYQG R+ VLEFFEYMGFKCP+RKG+ADF
Sbjct: 394 ADVTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADF 453
Query: 451 LQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDKSRTHPAAL 510
LQEVTSKKDQEQYW R++ PY Y+SV DF GF+SFH GQQLA++ VPYDK++THPAAL
Sbjct: 454 LQEVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAAL 513
Query: 511 VKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVA 570
V KYGISN DLF+ACF REWLLMKRNSFVY+FKT QITIMSLIA+TV+FRTEM VG V
Sbjct: 514 VTQKYGISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQ 573
Query: 571 DGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLS 630
DG KFYGALFFSLINLMFNG+AELAFTV RLPVFFKQRD LFYPPWA+ALP F+L+IPLS
Sbjct: 574 DGQKFYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLS 633
Query: 631 ILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANXXXX 690
++ES IW+ LTYYTIGFAP+A+R FRQ LA+F VN MALSLFRF+G++GRTEV+AN
Sbjct: 634 LIESVIWIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGT 693
Query: 691 XXXXXXXXXXXXXIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERWSKPVSDPKIHE 750
I+KDDI ++ W YY SPMMYGQ A+VINEFLDERW P +D +I+
Sbjct: 694 LALLVVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGSPNNDTRINA 753
Query: 751 PTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDG 810
TVG++LLKSRGFFT YW+WICIGAL GFT+LFN +I A+ +LNPLG +K T + E+G
Sbjct: 754 KTVGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEG 813
Query: 811 DKKKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAE 870
K K S GT + + + S T+ HGPKKGMVLPFQPLSLAF++VNY VDMPAE
Sbjct: 814 KDKHKGS-HSGTGGSVVELTS------TSSHGPKKGMVLPFQPLSLAFNNVNYYVDMPAE 866
Query: 871 MKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISIS 930
MKAQG+E DRLQLLRDV G FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGGY EG I+IS
Sbjct: 867 MKAQGVEGDRLQLLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINIS 926
Query: 931 GYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV 990
GYPKNQATFARVSGYCEQNDIHSPHVTVYESL++SAWLRLS+DID+KTR+MFV+EVM+LV
Sbjct: 927 GYPKNQATFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELV 986
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
EL+PL N++VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV
Sbjct: 987 ELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1046
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGV 1110
RNTVDTGRTVVCTIHQPSIDIFE+FDELLLMKRGGQVIYAG LG SQKLVEYFEA+ GV
Sbjct: 1047 RNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGV 1106
Query: 1111 PRITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSSLYQRNEELIKELSTPAPGSSDLY 1170
P+I +GYNPATWML+++TP+ E+Q++VDFA I+V SS+ +RN+ELIKELSTP PGS+DLY
Sbjct: 1107 PKIKDGYNPATWMLDVTTPSMESQMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLY 1166
Query: 1171 FPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQ 1230
F T+Y+QPF Q KACFWK S WR PQYNA+RF +T+V+G+LFGL+FW G K +K+Q
Sbjct: 1167 FRTKYAQPFSTQTKACFWKMYWSNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQ 1226
Query: 1231 DLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIY 1290
DL N FGA+Y AV FLG+TNA +V V+ ERTVFYRE+AAGMYS + YA SQV +E++Y
Sbjct: 1227 DLNNFFGAMYAAVLFLGATNAATVQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMY 1286
Query: 1291 VAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILS 1350
QT VY LILYSM+G+ W +FFWF Y ++ F+ FTLYGMM+VALTP QI I
Sbjct: 1287 NTIQTGVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICL 1346
Query: 1351 GFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTAT 1410
FFLS WNLFSGFLIPR QIPIWWRWYYW SPVAWTLYG++TSQVGD + V I G
Sbjct: 1347 SFFLSFWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRDSIVHITG-VGD 1405
Query: 1411 MTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXXXXITLINFQRR 1458
M++K LLK+ FGF YD I +NFQRR
Sbjct: 1406 MSLKTLLKNGFGFDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5194 (1833.4 bits), Expect = 0., P = 0.
Identities = 970/1428 (67%), Positives = 1161/1428 (81%)
Query: 32 FREVWKSSSN-AFSRSQRXXXXXXXLRWAAIERLPTYDRLRRGMLSQLGDDGKVVRREVN 90
FR+V+ ++ F RS+R LRWAAIERLPT+DRLR+GML Q +GK+ +++
Sbjct: 36 FRDVFMPQTDEVFGRSERREEDDMELRWAAIERLPTFDRLRKGMLPQTSANGKIELEDID 95
Query: 91 VKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIRYEHLNIQGEVHI 150
+ +L +D+K L E IL VEEDN+KFLR LRER DRVGI++PKIE+RYE+++++G+V
Sbjct: 96 LTRLEPKDKKHLMEMILSFVEEDNEKFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRS 155
Query: 151 GSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKT 210
SRA+PTL N +N E++LG +LPSK++KIQILKD+SG+VKPSRMTLLLGPP +GKT
Sbjct: 156 ASRALPTLFNVTLNTLESILGFFHLLPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKT 215
Query: 211 TXXXXXXXXXXXXXXXXXXIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGR 270
T I YCGHEF+EFVPQ+TCAYISQ+DLHFGEMTVRE +DFSGR
Sbjct: 216 TLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGR 275
Query: 271 CLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICA 330
CLGVG+RY++++E+SRREKE GIKPDP+IDA+MK+ A++GQ+TSL TDYVLK+LGLDICA
Sbjct: 276 CLGVGSRYQLMSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICA 335
Query: 331 DTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHV 390
D + GD MRRG+SGGQKKR+TTGEMLVGPA+ L MDEISTGLDSSTTFQICK+M+Q+VH+
Sbjct: 336 DILAGDVMRRGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHI 395
Query: 391 LEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADF 450
++T I+SLLQPAPE ++LFD+IILLSEGQIVYQGPR+ VLEFFEY GF+CP+RKGVADF
Sbjct: 396 SDVTMIISLLQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADF 455
Query: 451 LQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDKSRTHPAAL 510
LQEVTSKKDQEQYW +++QPY Y+SVSDF GFS+FH GQ+L ++ VPYDK++TH AAL
Sbjct: 456 LQEVTSKKDQEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAAL 515
Query: 511 VKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVA 570
V KYGISN +LF+ACF REWLLMKRNSFVY+FKT QITIMSLI +TV+ RTEM VG V
Sbjct: 516 VTQKYGISNWELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVR 575
Query: 571 DGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLS 630
DG KFYGA+FFSLIN+MFNGLAELAFTV RLPVF+KQRD LFYPPWA+ALP ++L+IPLS
Sbjct: 576 DGQKFYGAMFFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLS 635
Query: 631 ILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANXXXX 690
++ES IW+ LTYYTIGFAP+A+R FRQ LA+F VN MALSLFRF+G+IGRTEV++N
Sbjct: 636 LIESGIWIGLTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGT 695
Query: 691 XXXXXXXXXXXXXIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERWSKPVSDPKIHE 750
IAKDDI P+M W YY+SPMMYGQ AIV+NEFLDERWS P D +I+
Sbjct: 696 FTLLIVFTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINA 755
Query: 751 PTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDG 810
TVG++LLKSRGFFT YW+WICI AL GF++LFN+ +I A+ +LNPLG +K TV+EE
Sbjct: 756 KTVGEVLLKSRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGK 815
Query: 811 DKKKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAE 870
DK+K + GTE + + + SSS GPK+GMVLPFQPLSLAF++VNY VDMP+E
Sbjct: 816 DKQKGENR--GTEGSVVELNSSSNK------GPKRGMVLPFQPLSLAFNNVNYYVDMPSE 867
Query: 871 MKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISIS 930
MKAQG+E DRLQLLRDV G FRPG+LTAL+GVSGAGKTTLMDVLAGRKTGGY EG ISIS
Sbjct: 868 MKAQGVEGDRLQLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISIS 927
Query: 931 GYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV 990
GYPKNQ TFARVSGYCEQNDIHSPHVTVYESL++SAWLRLS+DID KTR++FV+EVM+LV
Sbjct: 928 GYPKNQTTFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELV 987
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
EL+PL N++VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV
Sbjct: 988 ELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1047
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGV 1110
RNTVDTGRTVVCTIHQPSIDIFE+FDELLLMKRGGQVIYAG LG SQKLVEYFEAV GV
Sbjct: 1048 RNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGV 1107
Query: 1111 PRITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSSLYQRNEELIKELSTPAPGSSDLY 1170
P+I +GYNPATWML+++TP+ E+Q+++DFA I+ SSLY+RN+ELIK+LSTP PGS D+Y
Sbjct: 1108 PKINDGYNPATWMLDVTTPSMESQMSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVY 1167
Query: 1171 FPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQ 1230
F T+Y+Q F Q KACFWKQ SYWR PQYNA+RF +T+V+G+LFGLIFW G KT+ +Q
Sbjct: 1168 FKTKYAQSFSTQTKACFWKQYWSYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQ 1227
Query: 1231 DLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIY 1290
DL N FGA+Y AV FLG+ NA +V ++ ERTVFYRE+AAGMYS + YA SQV +E++Y
Sbjct: 1228 DLNNFFGAMYAAVLFLGALNAATVQPAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMY 1287
Query: 1291 VAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILS 1350
QT VY LILYSM+G W +F WF Y ++ SF+ FTLYGMM++ALTP QI I
Sbjct: 1288 NTIQTGVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICM 1347
Query: 1351 GFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTAT 1410
FFLSLWNLFSGFLIPR QIPIWWRWYYW +PVAWTLYGL+TSQVGD + V I G
Sbjct: 1348 SFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKDSMVHISG-IGD 1406
Query: 1411 MTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXXXXITLINFQRR 1458
+ +K LLK+ FGF++D I +NFQRR
Sbjct: 1407 IDLKTLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGIKFLNFQRR 1454
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4289 (1514.9 bits), Expect = 0., P = 0.
Identities = 798/1371 (58%), Positives = 1015/1371 (74%)
Query: 88 EVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIRYEHLNIQGE 147
E++++KLG QD K+L E ++K+ +++++K L KL++RIDRVGID+P IE+R++HL ++ E
Sbjct: 72 EIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAE 131
Query: 148 VHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGA 207
VH+G RA+PT N + N A+ L +L ++P++K+K IL DVSG+VKP RM LLLGPP +
Sbjct: 132 VHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSS 191
Query: 208 GKTTXXXXXXXXXXXXXXXXXXIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDF 267
GKTT + Y GH EFVPQRT AYI QND+H GEMTVRET +
Sbjct: 192 GKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAY 251
Query: 268 SGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD 327
+ R GVG+RY+ML E++RREKEA IKPDP+ID +MKA + AG+KT++ TDY+LK+LGL+
Sbjct: 252 AARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLE 311
Query: 328 ICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQM 387
+CADTMVGD M RG+SGGQKKRVTTGEMLVGP++ L MDEISTGLDSSTT+QI ++
Sbjct: 312 VCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNY 371
Query: 388 VHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGV 447
VH+ T ++SLLQPAPE ++LFD+IIL++EG+I+Y+GPR+ V+EFFE MGFKCP RKGV
Sbjct: 372 VHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGV 431
Query: 448 ADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDKSRTHP 507
ADFLQEVTSKKDQ QYW R+D+PYR+I V +F + F SFHVG+++ ++LA+P+DK+++HP
Sbjct: 432 ADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHP 491
Query: 508 AALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVG 567
AAL KYG+ +L + F RE+LLMKRNSFVY FK Q+ +M+ + +T+FFRTEM
Sbjct: 492 AALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKK 551
Query: 568 NVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRI 627
DG+ + GALFF L+ LMFNG++EL+ T+ +LPVF+KQRD LFYP W Y+LP ++L+I
Sbjct: 552 TEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKI 611
Query: 628 PLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANX 687
P+S +E+A+ +TYY IGF P RLF+QY+ +N MA +LF+ + ++GR +VAN
Sbjct: 612 PISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANT 671
Query: 688 XXXXXXXXXXXXXXXXIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERWSKPVSDPK 747
+++DDI+ + IWGY++SP+MYGQNAI+ NEF WS+ V +
Sbjct: 672 FGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSS 731
Query: 748 IHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIE 807
T+G LKSRGF YWYWI GAL GF +LFN F A+ FLN LGK + + E
Sbjct: 732 ---ETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAE 788
Query: 808 EDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDM 867
E P +++T++ + SE V G K+GMVLPF+P S+ F +V YSVDM
Sbjct: 789 E-----------PASDETELQ-SARSEGVVEAGANKKRGMVLPFEPHSITFDNVVYSVDM 836
Query: 868 PAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDI 927
P EM QG +EDRL LL+ V+G FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY +G+I
Sbjct: 837 PQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNI 896
Query: 928 SISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVM 987
+ISGYPKNQ TFAR+SGYCEQ DIHSPHVTVYESL++SAWLRL ++D RK+F++EVM
Sbjct: 897 TISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVM 956
Query: 988 DLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
+LVEL PL A+VGLPG GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM
Sbjct: 957 ELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1016
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAV 1107
RTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG+ IY GPLG +S L+ YFE++
Sbjct: 1017 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESI 1076
Query: 1108 PGVPRITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSSLYQRNEELIKELSTPAPGSS 1167
G+ +IT GYNPATWMLE+ST + EA L VDFA +Y S LY+RN+ELIKELS PAPGS
Sbjct: 1077 QGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSK 1136
Query: 1168 DLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTK 1227
DLYFPTQYSQ FL QC A WKQ SYWR+P Y A+RF TI + L+FG +FWD G KTK
Sbjct: 1137 DLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTK 1196
Query: 1228 KQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIE 1287
+QDL N G++Y AV FLG NA SV VV+ ERTVFYRE+AAGMYS + YAF+QV IE
Sbjct: 1197 TRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIE 1256
Query: 1288 LIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGA 1347
+ YV Q +VY LI+Y+M+GF W A +FFW+L+ + SF+ FT YGMM VA+TP I +
Sbjct: 1257 IPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIAS 1316
Query: 1348 ILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGS 1407
++S F +WNLFSGFLIPR +P+WW WYYWL PVAWTLYGL+ SQ GDI E P +
Sbjct: 1317 VVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDI---TE-PMA 1372
Query: 1408 TATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXXXXITLINFQRR 1458
+ M+VKQ +++ +G++ I NFQ+R
Sbjct: 1373 DSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4162 (1470.2 bits), Expect = 0., P = 0.
Identities = 801/1434 (55%), Positives = 1019/1434 (71%)
Query: 40 SNAFSRSQRXXXXXXXLRWAAIERLPTYDRLRRGMLSQLGDD----GKVVRREVNVKKLG 95
S+ R+Q L+WAAIE+LPTY RLR +++ + +D +++ +EV+V KL
Sbjct: 37 SSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDVTKLD 96
Query: 96 MQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIRYEHLNIQGEVHIGSRAI 155
+DR++ + + K+ E+DN++ L KLR RIDRVGI +P +E+RYEHL I+ + + G+R++
Sbjct: 97 GEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADCYTGNRSL 156
Query: 156 PTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXX 215
PTL N V N+ E+ LG + I +KK ++ ILKD+SG++KP RMTLLLGPP +GKTT
Sbjct: 157 PTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTTLLLA 216
Query: 216 XXXXXXXXXXXXXXIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVG 275
I Y G++ EFVP++T AYISQNDLH G MTV+ET+DFS RC GVG
Sbjct: 217 LAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARCQGVG 276
Query: 276 TRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335
TRY++L E++RREK+AGI P+ ++D +MKA+A G K SL TDY LK+LGLDIC DT+VG
Sbjct: 277 TRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKDTIVG 336
Query: 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITT 395
D M RG+SGGQKKRVTTGEM+VGP K L MDEISTGLDSSTTFQI K ++Q+VH+ E T
Sbjct: 337 DDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLNEATV 396
Query: 396 IVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVT 455
++SLLQPAPE +DLFD+IIL+SEGQIVYQGPR+ +LEFFE GFKCP+RKG ADFLQEVT
Sbjct: 397 LMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFLQEVT 456
Query: 456 SKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDKSRTHPAALVKNKY 515
SKKDQEQYW ++PY YI VS+F + SFHVG +++N+LAVP+DKSR H AALV +KY
Sbjct: 457 SKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALVFDKY 516
Query: 516 GISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKF 575
+S +L ++C+ +EWLLM+RN+F Y+FKT QI I++ I T+F RTEM N D +
Sbjct: 517 SVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGDANLY 576
Query: 576 YGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESA 635
GAL F +I MFNG AE+A V RLPVF+KQRD LFYP W ++LP F+L IP SILES
Sbjct: 577 IGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSILEST 636
Query: 636 IWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANXXXXXXXXX 695
W+ +TYY+IGFAP ASR F+Q+L F + MA SLFR I S+ RT ++AN
Sbjct: 637 AWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGALTLLL 696
Query: 696 XXXXXXXXIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERWSKPVSDPKIHEPTVGK 755
+ K I + W Y+VSP+ Y N +V+NE RW ++ +G
Sbjct: 697 VFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSN-STIKLGT 755
Query: 756 LLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAK---PTVIEEDGDK 812
++L + + WYWI +GAL FT LFNILF A+ +LNPLGK P ED D+
Sbjct: 756 MVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEENEDADQ 815
Query: 813 -----KKKASGQPGTEDTDMSV-RSSSENVGTT--GHGPKKGMVLPFQPLSLAFHHVNYS 864
++ S G ++++ R S ++ G G KKGMVLPF PL+++F V Y
Sbjct: 816 GKDPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAGNKKGMVLPFTPLAMSFDDVKYF 875
Query: 865 VDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTE 924
VDMP EM+ QG+ E RLQLL+ V+G FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY E
Sbjct: 876 VDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE 935
Query: 925 GDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVD 984
GD+ ISG+PK Q TFAR+SGYCEQ DIHSP VTV ESL+FSA+LRL ++ + MFVD
Sbjct: 936 GDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKMMFVD 995
Query: 985 EVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
+VM+LVEL+ L +++VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA
Sbjct: 996 QVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
Query: 1045 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYF 1104
IVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL+LMKRGGQVIYAGPLG+ S K+VEYF
Sbjct: 1056 IVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHKVVEYF 1115
Query: 1105 EAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSSLYQRNEELIKELSTPAP 1164
E+ PGV +I YNPATWMLE S+ AE +L+VDFA++Y +S+L+QRN+ L+KELS P
Sbjct: 1116 ESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVKELSVPPA 1175
Query: 1165 GSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQ 1224
G+SDLYF TQ+SQ Q K+C WKQ +YWR P YN +RF T+ LL G +FW G
Sbjct: 1176 GASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGTVFWQIGG 1235
Query: 1225 KTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQV 1284
DL + GALY A+ F+G N ++V +V+ ERTVFYRERAAGMYS + YA SQV
Sbjct: 1236 NRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRERAAGMYSAMPYAISQV 1295
Query: 1285 LIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQ 1344
EL YV QTV Y LI+Y+M+GF WKA++FFWF+++ SF+ +T YGMM V+LTP Q
Sbjct: 1296 TCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTVSLTPNQQ 1355
Query: 1345 IGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEI 1404
+ +I + F ++NLFSGF IPR +IP WW WYYW+ PVAWT+YGL+ SQ GD+E +++
Sbjct: 1356 VASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVETRIQV 1415
Query: 1405 PGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXXXXITLINFQRR 1458
G +TVKQ ++D +GF+ D I +NFQ R
Sbjct: 1416 LGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4156 (1468.0 bits), Expect = 0., P = 0.
Identities = 798/1437 (55%), Positives = 1020/1437 (70%)
Query: 33 REVWKSSSNA---FSRSQRXXXXXX----XLRWAAIERLPTYDRLRRGMLSQLGDD---- 81
R V K+S N F+ S R L+WA+IE+LPTY+RLR ++ +LG+D
Sbjct: 21 RSVSKASRNMEDIFNTSSRRTKSVNEDEEALKWASIEKLPTYNRLRTSLMPELGEDDVYG 80
Query: 82 GKVVRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIRYEH 141
+++ + V+V KL ++R++ + + K+ E+DN++ L KLR RIDRVGI +P +E+RY+H
Sbjct: 81 NQILNKAVDVTKLDGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDH 140
Query: 142 LNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLL 201
L ++ + + G R++P+L NAV N+ E LG + I +KK ++ ILKDVSG+VKPSRMTLL
Sbjct: 141 LTVKADCYTGDRSLPSLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLL 200
Query: 202 LGPPGAGKTTXXXXXXXXXXXXXXXXXXIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTV 261
LGPP +GKTT + Y G+ EFVP +T AYISQNDLH G MTV
Sbjct: 201 LGPPSSGKTTLLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTV 260
Query: 262 RETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVL 321
+ET+DFS RC GVGTRY++L E++RREK+AGI P+ ++D +MKA+A G K+SL TDY L
Sbjct: 261 KETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTL 320
Query: 322 KLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQIC 381
K+LGLDIC DT+VGD M RG+SGGQKKRVTTGEM+VGP K L MDEISTGLDSSTTFQI
Sbjct: 321 KILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIV 380
Query: 382 KYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKC 441
K ++Q+VH+ E T ++SLLQPAPE +DLFD+IILLSEGQIVYQGPR+ +LEFFE GFKC
Sbjct: 381 KCLQQIVHLTEATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKC 440
Query: 442 PDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYD 501
P+RKG ADFLQEVTSKKDQEQYW ++PYRYI VS+F F FHVG +L+N+L+VPYD
Sbjct: 441 PERKGTADFLQEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYD 500
Query: 502 KSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFR 561
KS++H AAL+ +KY I +L ++C+ +EW+LMKRNSF Y+FKT QI I++ I T++ R
Sbjct: 501 KSKSHKAALMFDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLR 560
Query: 562 TEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALP 621
TEM N D + G+L F++I MFNGLAE+A T+ RLPVF+KQRD LF+PPW Y LP
Sbjct: 561 TEMHTRNEIDANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLP 620
Query: 622 IFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRT 681
F+L IP+SI ES W+ +TYY+IG+AP A R F+Q+L F + MA +FRFI S RT
Sbjct: 621 TFLLGIPISIFESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRT 680
Query: 682 EVVANXXXXXXXXXXXXXXXXXIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERWSK 741
+AN + + +I + W Y++SP+ Y NAI +NE RW
Sbjct: 681 MTIANTGGVLVLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMN 740
Query: 742 PVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKA 801
+S +G +L F WYWI +G L GFT++FN F A+ +L+PLGKA
Sbjct: 741 KMSGNSTTR--LGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKA 798
Query: 802 KPTVIEEDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHV 861
+ + +E+ ++ K +G ++T+M E+V KKGMVLPF PL+++F V
Sbjct: 799 QAILPKEEDEEAKGKAGS--NKETEM------ESVSA-----KKGMVLPFTPLAMSFDDV 845
Query: 862 NYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 921
Y VDMPAEM+ QG++E RLQLL+ V+ FRPGVLTALMGVSGAGKTTLMDVLAGRKTGG
Sbjct: 846 KYFVDMPAEMREQGVQETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 905
Query: 922 YTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKM 981
Y EGD+ +SG+PK Q TFAR+SGYCEQ DIHSP VTV ESL+FSA+LRL+ ++ + + M
Sbjct: 906 YIEGDVRVSGFPKKQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLM 965
Query: 982 FVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
FVD+VM+LVEL L +A+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR
Sbjct: 966 FVDQVMELVELVDLRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1025
Query: 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLV 1101
AAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG VIY+GPLGR S K+V
Sbjct: 1026 AAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVV 1085
Query: 1102 EYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSSLYQRNEELIKELST 1161
EYFE+ PGVP+I YNPATWMLE S+ AE +L VDFA++Y S+L QRN+ L++ELS
Sbjct: 1086 EYFESFPGVPKIPEKYNPATWMLEASSLAAELKLGVDFAELYKASALCQRNKALVQELSV 1145
Query: 1162 PAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWD 1221
P G++DLYF TQ+SQ Q K+C WKQ +YWR P YN +RF T+ L+ G +FW
Sbjct: 1146 PPQGATDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQ 1205
Query: 1222 KGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAF 1281
G K QDL + GA+Y AV F+G N ++V +V+ ERTVFYRE+AAGMYS + YA
Sbjct: 1206 IGGKRSNVQDLTMVIGAIYAAVVFVGINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAI 1265
Query: 1282 SQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTP 1341
SQV EL YV QT Y LI+YSM+GF WKA +F WF+++ SF+ +T YGMM V+LTP
Sbjct: 1266 SQVTCELPYVLIQTTYYSLIIYSMVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTP 1325
Query: 1342 APQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGN 1401
Q+ +I + F ++NLFSGF IPR +IP WW WYYW+ PVAWT+YGL+TSQ GD+E
Sbjct: 1326 NQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETP 1385
Query: 1402 VEIPGSTATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXXXXITLINFQRR 1458
+ + G +TVKQ +KD +GF+ D I +NFQ R
Sbjct: 1386 IALLGGAPGLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3992 (1410.3 bits), Expect = 0., P = 0.
Identities = 759/1430 (53%), Positives = 1006/1430 (70%)
Query: 35 VWKSSSNAFSRS---QRXXXXXXXLRWAAIERLPTYDRLRRGMLSQLGDDGKVVRREVNV 91
+W S+ NAFSRS + LRWAA++RLPTY R+RRG+ + + K E+ +
Sbjct: 1 MWNSAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPK----EIQI 56
Query: 92 KKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIRYEHLNIQGEVHIG 151
L +++ L + ++ VE D ++F ++R+R D V + PKIE+R+++L ++ VH+G
Sbjct: 57 GNLEASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVG 116
Query: 152 SRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTT 211
SRA+PT+PN +IN+AE +L ++ ++ K+ K+ IL +SG+++PSR+TLLLGPP +GKTT
Sbjct: 117 SRALPTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTT 176
Query: 212 XXXXXXXXXXXXXXXXXXIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRC 271
I Y G++ KE + RT AY+SQ D H EMTVR+T++F+GRC
Sbjct: 177 LLLALAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRC 236
Query: 272 LGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICAD 331
GVG +Y+ML E++RREK AGI PD ++D +MK+ AL G +TSL +YV+K+LGLD CAD
Sbjct: 237 QGVGFKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCAD 296
Query: 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVL 391
T+VGD+M +G+SGGQKKR+TTGE+LVGPA+VL MDEIS GLDSSTT QI YM+ H L
Sbjct: 297 TLVGDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHAL 356
Query: 392 EITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
E TT++SLLQP+PE Y+LFD++IL+SEGQI+YQGPR++VL+FF +GF CPDRK VADFL
Sbjct: 357 EGTTVISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFL 416
Query: 452 QEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDKSRTHPAALV 511
QEVTSKKDQ+QYW +PYRY+ F + F S+ G++LA L VP+DK H AAL
Sbjct: 417 QEVTSKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALS 476
Query: 512 KNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVAD 571
++YG+ +L + F + LMK+N+F+Y+FK Q+ +++LI +TVF RT M + D
Sbjct: 477 TSQYGVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDD 536
Query: 572 GAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSI 631
G + G+L+FS++ ++FNG E+ V +LPV +K RD FYP WAY LP ++L IP SI
Sbjct: 537 GNIYLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSI 596
Query: 632 LESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANXXXXX 691
+ESA WV +TYYTIG+ P SR +Q+L +F+++ M+L LFR +GS+GR +VAN
Sbjct: 597 IESATWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSF 656
Query: 692 XXXXXXXXXXXXIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERWSKPVSDPKIHEP 751
I++D I + IWGY++SP+MY QNA +NEFL W K +
Sbjct: 657 AMLVVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHT--SD 714
Query: 752 TVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGD 811
++G LLK R F+ NYWYWI + AL G+T+LFNILF + LNP GK + V E+ D
Sbjct: 715 SLGLALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELD 774
Query: 812 KKKKASGQPGTEDTDMSVRSSSENVGTTGHGP---KKGMVLPFQPLSLAFHHVNYSVDMP 868
+++K + G E + +R ++ G+ HG +GMVLPFQPLSL+F ++NY VD+P
Sbjct: 775 EREKK--RKGDEFV-VELREYLQHSGSI-HGKYFKNRGMVLPFQPLSLSFSNINYYVDVP 830
Query: 869 AEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDIS 928
+K QGI EDRLQLL +++G FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG EGD+
Sbjct: 831 LGLKEQGILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVY 890
Query: 929 ISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMD 988
ISG+PK Q TFAR+SGYCEQND+HSP +TV ESLLFSA LRL +DIDS+T++ FV EVM+
Sbjct: 891 ISGFPKRQETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVME 950
Query: 989 LVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
LVEL L+ A+VGLPGVDGLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMR
Sbjct: 951 LVELTSLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1010
Query: 1049 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVP 1108
TVRN V+TGRT+VCTIHQPSIDIFE+FDELL MKRGG++IYAGPLG++S +L++YFE++
Sbjct: 1011 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIE 1070
Query: 1109 GVPRITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSSLYQRNEELIKELSTPAPGSSD 1168
GV +I G+NPA WML+++ T E +L VDFA+IY S+L QRN+ELI+ LS P+ + +
Sbjct: 1071 GVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKE 1130
Query: 1169 LYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKK 1228
+ FPT+YSQ Q AC WKQ SYWR+PQY A+RF T+V+ L+ G I W G K
Sbjct: 1131 IEFPTRYSQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKRDT 1190
Query: 1229 QQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIEL 1288
QQ L N G++Y AV F+G TNA + VVS ER V YRERAAGMYS L +AF+QV IE
Sbjct: 1191 QQQLFNAMGSMYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSALPFAFAQVFIEF 1250
Query: 1289 IYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAI 1348
YV Q+ +Y I Y+M F W A +F W+L+ + S M FT YGMM A+TP + +I
Sbjct: 1251 PYVLAQSTIYSTIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNVASI 1310
Query: 1349 LSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGST 1408
++ F LWNLFSGF+IP +IP+WWRWYYW +PVAWTLYGL+ SQ GD E +V++
Sbjct: 1311 IAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLSDGI 1370
Query: 1409 ATMTVKQLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXXXXITLINFQRR 1458
+ VKQLL+D G+K+D I NFQRR
Sbjct: 1371 HQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3659 (1293.1 bits), Expect = 0., P = 0.
Identities = 703/1407 (49%), Positives = 953/1407 (67%)
Query: 56 LRWAAIERLPTYDRLRRGMLSQLGDDGKVV--RREVNVKKLGMQDRKQLRESILKLVEED 113
L+WA IERLPT R+R +L GD+ RR V+V KLG +R + E ++K +E D
Sbjct: 59 LQWAEIERLPTVKRMRSTLLDD-GDESMTEKGRRVVDVTKLGAVERHLMIEKLIKHIEND 117
Query: 114 NDKFLRKLRERIDRVGIDIPKIEIRYEHLNIQGEVHI-GSRAIPTLPNAVINIAENVLGS 172
N K L+K+R RIDRVG+++P IE+RYE L + E + +A+PTL N + ++
Sbjct: 118 NLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTLWNTAKRVLSELV-K 176
Query: 173 LRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXXXXXXXXXXXXXXXXXIKY 232
L + + KI I+ DV+G++KP R+TLLLGPP GKTT I Y
Sbjct: 177 LTGAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLKCSGEISY 236
Query: 233 CGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAG 292
GH EFVPQ+T AYISQ DLH EMTVRET+DFS RC GVG+R +++ E+S+REKE G
Sbjct: 237 NGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSKREKEKG 296
Query: 293 IKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTT 352
I PD E+DAYMKA ++ G + SL TDY+LK+LGLDICA+ ++GD MRRG+SGGQKKR+TT
Sbjct: 297 IIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQKKRLTT 356
Query: 353 GEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412
EM+VGP K L MDEI+ GLDSST FQI K ++Q H+ T +VSLLQPAPE+YDLFD+
Sbjct: 357 AEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPESYDLFDD 416
Query: 413 IILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYR 472
I+L+++G+IVY GPR +VL FFE GF+CP+RKGVADFLQEV SKKDQ QYW+ +D PY
Sbjct: 417 IMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWWHEDLPYS 476
Query: 473 YISVSDFVQGFSSFHVGQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWL 532
++SV + F +G+++ + L+ PYD+S++H AL + Y + N +LF AC RE+L
Sbjct: 477 FVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIACISREYL 536
Query: 533 LMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLA 592
LMKRN FVYIFKT+Q+ + + I +TVF RT M + ++ G + ALFF+LI L+ +G
Sbjct: 537 LMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGI-DIIHGNSYMSALFFALIILLVDGFP 595
Query: 593 ELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAAS 652
EL+ T RL VF+KQ+ FYP WAYA+P VL++PLS ES +W CL+YY IG+ P AS
Sbjct: 596 ELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIGYTPEAS 655
Query: 653 RLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANXXXXXXXXXXXXXXXXXIAKDDIEPF 712
R F+Q++ FAV+ ++S+FR + +I +T V + I + +
Sbjct: 656 RFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAW 715
Query: 713 MIWGYYVSPMMYGQNAIVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWI 772
+ WG++ +P+ YG+ + +NEFL RW++ P + T+G+ +L++RG Y YW+
Sbjct: 716 LKWGFWANPLSYGEIGLSVNEFLAPRWNQ--MQP--NNFTLGRTILQTRGMDYNGYMYWV 771
Query: 773 CIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKKASG-QPGTEDTDMSVRS 831
+ AL GFT+LFNI+F A+ FL ++ + + DK + G + TED+ + ++
Sbjct: 772 SLCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQ---DKLSELQGTEKSTEDSSVRKKT 828
Query: 832 SSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVF 891
+ V T + MVLPF+PL++ F +NY VDMP EM+ QG ++ +LQLL D++G F
Sbjct: 829 TDSPVKTE---EEDKMVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAF 885
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDI 951
RPG+LTALMGVSGAGKTTL+DVLAGRKT GY EGDI ISG+PK Q TFARVSGYCEQ DI
Sbjct: 886 RPGILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCEQTDI 945
Query: 952 HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE 1011
HSP++TV ES+++SAWLRL+ +ID+ T+ FV +V++ +EL+ + +++VG+ GV GLSTE
Sbjct: 946 HSPNITVEESVIYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTE 1005
Query: 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1071
QRKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMR V+N DTGRT+VCTIHQPSIDI
Sbjct: 1006 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDI 1065
Query: 1072 FEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTA 1131
FEAFDEL+L+KRGG++IY GPLG+ S+ ++EYFE+VP +P+I + +NPATWML++S+ +
Sbjct: 1066 FEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVSSQSV 1125
Query: 1132 EAQLNVDFADIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQR 1191
E +L VDFA IY S+LY+RN EL+K+LS P GSSD+ F ++Q + Q K+ WK
Sbjct: 1126 EIELGVDFAKIYHDSALYKRNSELVKQLSQPDSGSSDIQFKRTFAQSWWGQFKSILWKMN 1185
Query: 1192 QSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNA 1251
SYWR P YN +R T+V L+FG +FW +GQ QQ + +FGA+Y V FLG N
Sbjct: 1186 LSYWRSPSYNLMRMMHTLVSSLIFGALFWKQGQNLDTQQSMFTVFGAIYGLVLFLGINNC 1245
Query: 1252 NSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWK 1311
S + TER V YRER AGMYS AYA QV+ E+ Y+ Q +V++ Y M+GF
Sbjct: 1246 ASALQYFETERNVMYRERFAGMYSATAYALGQVVTEIPYIFIQAAEFVIVTYPMIGFYPS 1305
Query: 1312 AKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIP 1371
A + FW LY + S + F M +V++TP + AIL F +NLFSGFLIP+ Q+P
Sbjct: 1306 AYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFMVAAILQSLFYVGFNLFSGFLIPQTQVP 1365
Query: 1372 IWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDXXXXX 1431
WW W Y+L+P +WTL G ++SQ GDI + + G + T V + LKD FGF +D
Sbjct: 1366 GWWIWLYYLTPTSWTLNGFISSQYGDIHEEINVFGQSTT--VARFLKDYFGFHHDLLAVT 1423
Query: 1432 XXXXXXXXXXXXXXXXXXITLINFQRR 1458
+ +NFQRR
Sbjct: 1424 AVVQIAFPIALASMFAFFVGKLNFQRR 1450
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3645 (1288.2 bits), Expect = 0., P = 0.
Identities = 695/1424 (48%), Positives = 957/1424 (67%)
Query: 36 WKSSSNAFSRSQRXXXXXXXLRWAAIERLPTYDRLRRGMLSQLGDDGKVVRREVNVKKLG 95
++SSS+ L+WA I+RLPT+ RLR ++ + G+ + ++ V+V KLG
Sbjct: 5 FRSSSSRNEHEDGGDEAEHALQWAEIQRLPTFKRLRSSLVDKYGEGTEKGKKVVDVTKLG 64
Query: 96 MQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIRYEHLNIQGEVHI-GSRA 154
+R + E ++K +E DN K L+K+R R++RVG++ P IE+RYEHL ++ + +A
Sbjct: 65 AMERHLMIEKLIKHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKA 124
Query: 155 IPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXX 214
+PTL N++ ++ ++L L + + + I+IL DVSG++ P R+TLLLGPPG GKTT
Sbjct: 125 LPTLWNSLKHVFLDLL-KLSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLK 183
Query: 215 XXXXXXXXXXXXXXXIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGV 274
I Y GH E VPQ+T AYISQ+DLH EMT RET+DFS RC GV
Sbjct: 184 ALSGNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGV 243
Query: 275 GTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMV 334
G+R +++ E+S+REK+ GI PDPEIDAYMKA ++ G K SL TDY+LK+LGLDICA+T+V
Sbjct: 244 GSRTDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLV 303
Query: 335 GDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEIT 394
G+ M+RG+SGGQKKR+TT EM+VGP K L MDEI+ GLDSST FQI K ++Q+ H+ T
Sbjct: 304 GNAMKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNAT 363
Query: 395 TIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEV 454
VSLLQPAPE+YDLFD+I+L++EG+IVY GPR+ VL+FFE GF+CP+RKGVADFLQEV
Sbjct: 364 VFVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEV 423
Query: 455 TSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDKSRTHPAALVKNK 514
SKKDQ QYW ++ P+ ++SV + F +G+++ L+ PYD S+TH AL N
Sbjct: 424 ISKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNV 483
Query: 515 YGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAK 574
Y + +LFRAC RE+LLMKRN FVY+FKT Q+ + ++I +TVF RT M + ++ G
Sbjct: 484 YSLPKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDI-DIIHGNS 542
Query: 575 FYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILES 634
+ LFF+ + L+ +G+ EL+ TV RL VF+KQ+ FYP WAYA+P VL+IPLS ES
Sbjct: 543 YMSCLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFES 602
Query: 635 AIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANXXXXXXXX 694
+W CLTYY IG+ P R FRQ++ FAV+ ++S+FR I +I +T V A
Sbjct: 603 LVWTCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVML 662
Query: 695 XXXXXXXXXIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERWSKPVSDPKIHEPTVG 754
I D+ ++ WG++V+P+ Y + + +NEFL RW K P T+G
Sbjct: 663 ITFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQK--MQPT--NVTLG 718
Query: 755 KLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKKK 814
+ +L+SRG +Y YW+ + AL G TI+FN +F A+ FL ++P +I +D
Sbjct: 719 RTILESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRP-MISQD----- 772
Query: 815 KASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQ 874
K S GT+D+ + ++ T P K M+LPF+PL++ F +NY VD+P EMK Q
Sbjct: 773 KLSELQGTKDSSVKKNKPLDSSIKTNEDPGK-MILPFKPLTITFQDLNYYVDVPVEMKGQ 831
Query: 875 GIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934
G E +LQLL +++G FRPGVLTALMG+SGAGKTTL+DVLAGRKT GY EG+I ISG+ K
Sbjct: 832 GYNEKKLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLK 891
Query: 935 NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
Q TFARVSGYCEQ DIHSP +TV ESL++SAWLRL +I+ +T+ FV +V++ +ELE
Sbjct: 892 VQETFARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEE 951
Query: 995 LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
+ +A+VG+ GV GLSTEQRKRLT+AVELVANPSIIFMDEPT+GLDARAAAIVMR V+N
Sbjct: 952 IKDALVGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVA 1011
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRIT 1114
+TGRT+VCTIHQPSI IFEAFDEL+L+KRGG++IY+GPLG+ S ++EYF+ +PGV +I
Sbjct: 1012 ETGRTIVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIR 1071
Query: 1115 NGYNPATWMLEISTPTAEAQLNVDFADIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQ 1174
+ YNPATWMLE+++ + E +L++DFA IY S LY+ N EL+KELS P GSSDL+F
Sbjct: 1072 DKYNPATWMLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRT 1131
Query: 1175 YSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQN 1234
++Q + Q K+C WK SYWR P YN +R T + +FGL+FW++G+K QQ+L
Sbjct: 1132 FAQNWWEQFKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDTQQNLFT 1191
Query: 1235 LFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQ 1294
+ GA+Y V F+G N S + TER V YRER AGMYS AYA +QV+ E+ Y+ Q
Sbjct: 1192 VLGAIYGLVLFVGINNCTSALQYFETERNVMYRERFAGMYSAFAYALAQVVTEIPYIFIQ 1251
Query: 1295 TVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFL 1354
+ +V+++Y M+GF + FW LY + + + F M ++++TP + AIL F
Sbjct: 1252 SAEFVIVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFF 1311
Query: 1355 SLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVK 1414
+ +N+F+GFLIP+ QIP WW W+Y+++P +WTL +SQ GDI + G T T V
Sbjct: 1312 TTFNIFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINAFGETKT--VA 1369
Query: 1415 QLLKDSFGFKYDXXXXXXXXXXXXXXXXXXXXXXXITLINFQRR 1458
L+D FGF +D + +NFQ+R
Sbjct: 1370 SFLEDYFGFHHDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2116 (749.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 416/785 (52%), Positives = 541/785 (68%)
Query: 38 SSSNAFSR---SQRXXXXXXXLRWAAIERLPTYDRLRRGMLSQLGDDGKVVRREVNVKKL 94
+S+N FSR S L+WAA+E+LPT+ RLR ++ D V+V KL
Sbjct: 19 NSNNHFSRRSGSTIDDHDEEALKWAALEKLPTFARLRTTIIHPHED-------LVDVTKL 71
Query: 95 GMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIRYEHLNIQGEVHIGSRA 154
G+ DR++ +SI K+ EEDN+KFL+K R RIDRV I +P +E+R+E + I+ HIG RA
Sbjct: 72 GVDDRQKFIDSIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKRA 131
Query: 155 IPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTXXX 214
+PTLPNA +NIAE L L +K K+ IL+DVSG++KPSRMTLLLGPP +GKTT
Sbjct: 132 LPTLPNAALNIAERGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLL 191
Query: 215 XXXXXXXXXXXXXXXIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGV 274
+ Y GH +EFVPQ+T AYISQND+H G MTV+ET+DFS RC GV
Sbjct: 192 ALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGV 251
Query: 275 GTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMV 334
GTRY++L+E+ RREK+AGI P+PE+D +MK+ A K+SL TDY L++LGLDIC DT+V
Sbjct: 252 GTRYDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVV 311
Query: 335 GDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEIT 394
GD+M RG+SGGQKKRVTTGEM+VGP K L MDEISTGLDSSTT+QI K ++++V + T
Sbjct: 312 GDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTDAT 371
Query: 395 TIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEV 454
++SLLQPAPE ++LFD+IILLSEGQIVYQGPR+ VL FFE GFKCPDRKG ADFLQEV
Sbjct: 372 VLMSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQEV 431
Query: 455 TSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDKSRTHPAALVKNK 514
TS+KDQEQYW +PY YISVS+F + F +FHVG L DL+VPYD+ ++HPA+LV K
Sbjct: 432 TSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKK 491
Query: 515 YGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAK 574
+ + LF+ C+ RE LLMKRN+F YI KT QI IM+LIA TV+ RTEM N +DGA
Sbjct: 492 HSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAV 551
Query: 575 FYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILES 634
+ GAL FS+I MFNG AELA + RLPVF+KQRD LF+PPW ++LP F+L IP+SI ES
Sbjct: 552 YIGALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFES 611
Query: 635 AIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANXXXXXXXX 694
+WV +TYY IGFAP SR + L F MA +FRFI + R+ ++AN
Sbjct: 612 VVWVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANTGGALVIL 671
Query: 695 XXXXXXXXXIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERW-SKPVSDPKIHEPTV 753
+ + +I + W Y+VSPM Y +A+ +NE L RW ++P SD + ++
Sbjct: 672 LLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWINQPSSD---NSTSL 728
Query: 754 GKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKK 813
G +L+ FT WYWI +G + GFT+LFNIL A+ FLNPL K + V +E+ ++
Sbjct: 729 GLAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVSKENTEEN 788
Query: 814 KKASG 818
+ +G
Sbjct: 789 RAENG 793
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1906 (676.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 377/790 (47%), Positives = 518/790 (65%)
Query: 33 REVWKSSSNAFSRSQRXXXXXXXLRWAAIERLP-----TYDR-LRRGML-SQLGD--DGK 83
RE + SNA + Q LRWAAI RLP T++ LRR +Q DG
Sbjct: 19 RESFARPSNAETVEQ----DEEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGN 74
Query: 84 VVRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVGIDIPKIEIRYEHLN 143
VV+ ++VKKL DR+ L L ++DN K L ++ER+DRVG+++PKIE+R+E+LN
Sbjct: 75 VVQT-IDVKKLDRADREMLVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLN 133
Query: 144 IQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLG 203
I+ +V G+RA+PTL N + E L SLRI+ +K K+ ILKD+SG++KP RMTLLLG
Sbjct: 134 IEADVQAGTRALPTLVNVSRDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLG 193
Query: 204 PPGAGKTTXXXXXXXXXXXXXXXXXXIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRE 263
PPG+GK+T I Y G +F +RT AYISQ D H E+TVRE
Sbjct: 194 PPGSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRE 253
Query: 264 TMDFSGRCLGVGTRYE-MLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLK 322
T+DF+ RC G + + +++R EKE GI+P EIDA+MKA ++ G+K S++TDYVLK
Sbjct: 254 TLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLK 313
Query: 323 LLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICK 382
+LGLD+C+DTMVG+ M RGVSGGQ+KRVTTGEM VGP K L MDEISTGLDSSTTFQI K
Sbjct: 314 VLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVK 373
Query: 383 YMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCP 442
++ VH+++ T +++LLQPAPE +DLFD++ILLSEG +VYQGPRE V+ FFE +GF+ P
Sbjct: 374 CIRNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLP 433
Query: 443 DRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDK 502
RKGVADFLQEVTSKKDQ QYW +PY++I VSD F + G + LA P+DK
Sbjct: 434 PRKGVADFLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDK 493
Query: 503 SRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRT 562
P+AL + K+ IS + + CF RE LL+KR+ F+Y F+T Q+ + L+ TVF +T
Sbjct: 494 KSADPSALCRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKT 553
Query: 563 EMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPI 622
+ + G ++ LFF L+++MFNG +EL + RLPVF+KQRD+ F+P W++++
Sbjct: 554 RLHPTSEQFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIAS 613
Query: 623 FVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTE 682
++LR+P S+LE+ +W + Y+T+G AP+A R FR L F+V+ MAL LFR + S+ R
Sbjct: 614 WLLRVPYSVLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDM 673
Query: 683 VVANXXXXXXXXXXXXXXXXXIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERWSKP 742
V+AN I K DI+P+ +WG++VSP+ YGQ AI +NEF RW P
Sbjct: 674 VIANTFGSAAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTP 733
Query: 743 VSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAK 802
+ I + T+G LLK R F T +YWYWI I L G+ ILFN + A+ +LNPL KA+
Sbjct: 734 SA---ISDTTIGLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLRKAR 790
Query: 803 PTVIEEDGDK 812
V+++ ++
Sbjct: 791 AVVLDDPNEE 800
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7PC87 | AB34G_ARATH | No assigned EC number | 0.7122 | 0.9890 | 0.9924 | yes | no |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.6805 | 0.9903 | 0.9883 | N/A | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6089 | 0.9794 | 0.9909 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.6144 | 0.9780 | 0.9944 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.6049 | 0.9759 | 0.9909 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6023 | 0.9835 | 0.9842 | N/A | no |
| Q8GU86 | PDR5_ORYSJ | No assigned EC number | 0.5896 | 0.9801 | 0.9828 | yes | no |
| Q8GU89 | PDR4_ORYSJ | No assigned EC number | 0.6070 | 0.9759 | 0.9813 | yes | no |
| Q8GU88 | PDR7_ORYSJ | No assigned EC number | 0.6094 | 0.9842 | 0.9937 | yes | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5280 | 0.9814 | 0.9889 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00021655001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (1451 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1458 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-98 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-98 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-76 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-69 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-55 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 3e-51 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-48 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 6e-46 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-42 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 8e-42 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-39 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-39 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-37 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-36 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-35 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-31 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 9e-31 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-29 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 3e-26 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-25 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-24 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-24 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-23 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 5e-23 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 9e-23 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-22 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 8e-22 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-20 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-20 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-20 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-20 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-20 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-20 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-20 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-20 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-20 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-20 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 5e-20 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 5e-20 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-19 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-19 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-19 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 6e-19 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-18 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-18 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-18 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-18 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-18 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-18 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 6e-18 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 8e-18 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-17 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-17 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-17 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-17 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-17 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-17 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 5e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 7e-17 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 7e-17 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 8e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 8e-17 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-16 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-16 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-16 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-16 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-16 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-16 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-16 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 9e-16 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-15 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-15 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-15 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-15 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-15 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-15 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 5e-15 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 6e-15 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-15 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 8e-15 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 9e-15 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-14 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-14 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-14 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-14 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-14 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-14 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-14 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-14 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-14 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-14 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-14 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-14 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 5e-14 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 6e-14 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-14 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 7e-14 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 8e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 8e-14 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 9e-14 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 9e-14 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-13 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-13 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-13 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-13 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-13 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 8e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-13 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-12 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-12 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-12 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-12 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 5e-12 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-12 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-12 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-12 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 7e-12 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-11 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-11 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-11 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-11 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-11 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-11 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-11 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-11 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-11 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-11 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-11 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-11 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-11 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-11 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 7e-11 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 7e-11 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 7e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-10 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-10 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-10 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-10 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-10 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-10 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-10 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-10 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-10 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-10 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-10 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-10 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-10 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-10 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-10 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 6e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-10 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 7e-10 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 8e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 8e-10 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 8e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 9e-10 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-09 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-09 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-09 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-09 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-09 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-09 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-09 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-09 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-09 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-09 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-09 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-09 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-09 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-09 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-09 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-09 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-09 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-09 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-09 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-09 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 5e-09 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 5e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-09 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 6e-09 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 6e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-09 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 8e-09 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 8e-09 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-08 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-08 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-08 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-08 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-08 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-08 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-08 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-08 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-08 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-08 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-08 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-08 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-08 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-08 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-08 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-08 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-08 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-08 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 6e-08 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 6e-08 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 6e-08 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-08 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 7e-08 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 8e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 8e-08 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 8e-08 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-08 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 9e-08 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 9e-08 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-07 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-07 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-07 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-07 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-07 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-07 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-07 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-07 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-07 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 5e-07 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 5e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-07 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-07 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 6e-07 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 6e-07 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 6e-07 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 6e-07 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 7e-07 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 8e-07 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 9e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-06 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-06 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-06 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-06 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-06 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-06 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-06 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-06 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-06 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 2e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-06 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-06 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-06 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-06 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-06 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-06 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-06 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-06 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 5e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-06 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 6e-06 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 6e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-06 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 7e-06 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 7e-06 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 7e-06 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 7e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-06 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 8e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 9e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 9e-06 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 9e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 9e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-05 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-05 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-05 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-05 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 1e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-05 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-05 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-05 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-05 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-05 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-05 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 3e-05 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-05 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-05 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-05 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-05 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 5e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 5e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 5e-05 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-05 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 6e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 6e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 6e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 6e-05 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 7e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 7e-05 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-05 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 8e-05 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 9e-05 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 9e-05 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 9e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-04 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 1e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-04 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-04 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-04 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-04 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-04 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 4e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 4e-04 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-04 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-04 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 5e-04 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 5e-04 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 5e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 5e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 5e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 6e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 6e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 6e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 7e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 7e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 7e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 7e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-04 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 8e-04 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 8e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 8e-04 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 9e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 0.001 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.001 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 0.001 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 0.001 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 0.001 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.001 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.001 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 0.001 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 0.001 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.001 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.002 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 0.002 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 0.002 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 0.002 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 0.002 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 0.002 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 0.002 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 0.002 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 0.002 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.002 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.002 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.002 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.002 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.002 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.002 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.002 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 0.002 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.002 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 0.003 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 0.003 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 0.003 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 0.003 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.003 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 0.003 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.003 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 0.003 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.003 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 0.003 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.003 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.003 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 0.004 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 0.004 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 2079 bits (5387), Expect = 0.0
Identities = 877/1470 (59%), Positives = 1096/1470 (74%), Gaps = 27/1470 (1%)
Query: 13 RSLSMGSSAGNRSGRASSSFREVWKSSSNAFSRSQRDDDDEEELRWAAIERLPTYDRLRR 72
R SM S R+S + +V+ S + R+ D+DEE L+WAAIE+LPTY RLR
Sbjct: 4 RGGSMRRSISRSVSRSSRNMEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRT 63
Query: 73 GMLSQLGDD----GKVVRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRV 128
++ ++ +++ +EV+V KL DR++ + + K+ EEDN+KFL+K R RIDRV
Sbjct: 64 SIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRV 123
Query: 129 GIDIPKIEIRYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKD 188
GI +P +E+R+EHL ++ + +IGSRA+PTLPNA NIAE+ LG L I +KK K+ ILKD
Sbjct: 124 GIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKD 183
Query: 189 VSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAY 248
SG++KPSRMTLLLGPP +GKTTLL+ALAGKLD LK++G+I Y G+ EFVP++T AY
Sbjct: 184 ASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAY 243
Query: 249 ISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATAL 308
ISQND+H G MTV+ET+DFS RC GVGTRY++L+E++RREK+AGI P+ E+D +MKATA+
Sbjct: 244 ISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAM 303
Query: 309 AGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEI 368
G K+SL TDY LK+LGLDIC DT+VGD+M RG+SGGQKKRVTTGEM+VGP K L MDEI
Sbjct: 304 EGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEI 363
Query: 369 STGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPRE 428
STGLDSSTT+QI K ++Q+VH+ E T ++SLLQPAPE +DLFD+IILLSEGQIVYQGPR+
Sbjct: 364 STGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRD 423
Query: 429 KVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHV 488
+LEFFE GFKCP+RKG ADFLQEVTSKKDQEQYW +++PYRYISVS+F + F SFHV
Sbjct: 424 HILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHV 483
Query: 489 GQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQI 548
G QL N+L+VP+DKS++H AALV +KY + M+L +AC+ +EWLLMKRN+FVY+FKT QI
Sbjct: 484 GMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQI 543
Query: 549 TIMSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQR 608
I++ IA TVF RTEM N DGA + GAL FS+I MFNG AELA + RLPVF+KQR
Sbjct: 544 IIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQR 603
Query: 609 DHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMA 668
D LF+PPW + LP F+L IP+SI+ES +WV +TYY+IGFAP ASR F+Q L F + MA
Sbjct: 604 DLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMA 663
Query: 669 LSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNA 728
+FR I S+ RT ++ANT G LLLVF+LGGF++ K +I + W Y+VSP+ YG NA
Sbjct: 664 AGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNA 723
Query: 729 IVINEFLDERW-SKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNIL 787
+ +NE RW +K SD + +G +L FT WYWI +GAL GFTILFN+L
Sbjct: 724 LAVNEMFAPRWMNKMASD---NSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVL 780
Query: 788 FIAAIQFLNPLGKAKPTVIEE-------------------DGDKKKKASGQPGTEDTDMS 828
F A+ +LNPLGK + + EE DG+ ++ + Q + +S
Sbjct: 781 FTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLS 840
Query: 829 VRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVS 888
S G PK+GMVLPF PL+++F VNY VDMPAEMK QG+ EDRLQLLR+V+
Sbjct: 841 KNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVT 900
Query: 889 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQ 948
G FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY EGDI ISG+PK Q TFAR+SGYCEQ
Sbjct: 901 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQ 960
Query: 949 NDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGL 1008
NDIHSP VTV ESL++SA+LRL ++ + + MFVDEVM+LVEL+ L +A+VGLPGV GL
Sbjct: 961 NDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGL 1020
Query: 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068
STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS
Sbjct: 1021 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080
Query: 1069 IDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEIST 1128
IDIFEAFDELLLMKRGGQVIY+GPLGR S K++EYFEA+PGVP+I YNPATWMLE+S+
Sbjct: 1081 IDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSS 1140
Query: 1129 PTAEAQLNVDFADIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCKACFW 1188
AE +L +DFA+ Y SSLYQRN+ L+KELSTP PG+SDLYF TQYSQ Q K+C W
Sbjct: 1141 LAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLW 1200
Query: 1189 KQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGS 1248
KQ +YWR P YN +RF T+ L+ G IFW G K DL + GA+Y AV F+G
Sbjct: 1201 KQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGI 1260
Query: 1249 TNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGF 1308
N ++V +V+ ERTVFYRERAAGMYS L YA +QV+ E+ YV QT Y LI+Y+M+ F
Sbjct: 1261 NNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAF 1320
Query: 1309 AWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRV 1368
W A +FFWF ++ SF+ FT YGMM V+LTP Q+ AI + F L+NLFSGF IPR
Sbjct: 1321 EWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRP 1380
Query: 1369 QIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDFL 1428
+IP WW WYYW+ PVAWT+YGL+ SQ GD+E +++PG T+K ++D +G+ DF+
Sbjct: 1381 KIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFM 1440
Query: 1429 PVVAVVKLVWLLAFVFVFTLAITLINFQRR 1458
VA V + + + F F+F I +NFQ R
Sbjct: 1441 GPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1208 bits (3127), Expect = 0.0
Identities = 409/1355 (30%), Positives = 632/1355 (46%), Gaps = 122/1355 (9%)
Query: 111 EEDNDKFLRKLRERIDRVGIDIP--KIEIRYEHLNIQGEVHIGSRAIPTLPNAVINIAEN 168
E + +++ R+ ID I K+ + Y++L+ G V S PT PNA++ I
Sbjct: 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTR 60
Query: 169 VLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDD-DLKLT 227
L+ + ILK + GL+KP +T++LG PG+G +TLL +A D + +
Sbjct: 61 GFRKLK-KFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVE 119
Query: 228 GKIKYCGHEFKEFVPQRT--CAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEIS 285
G I Y G +E Y ++ D+HF +TV ET+DF+ RC R + ++
Sbjct: 120 GVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREE 179
Query: 286 RREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGG 345
+ D + GL +T VG+ RGVSGG
Sbjct: 180 YAKHI--------------------------ADVYMATYGLSHTRNTKVGNDFVRGVSGG 213
Query: 346 QKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPE 405
++KRV+ E +G AK+ D + GLDS+T + + +K ++L+ T +V++ Q + +
Sbjct: 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQD 273
Query: 406 AYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYW- 464
AY+LFD +I+L EG +Y GP +K ++FE MGFKCPDR+ ADFL +TS + Q
Sbjct: 274 AYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKP 332
Query: 465 -FRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDKSRT--------------HP-A 508
+ K P + +F + + QL ++ D+
Sbjct: 333 GYEKKVP---RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKR 389
Query: 509 ALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGN 568
+ Y +S + C R +L MK N +F IM+LI +VF+ N
Sbjct: 390 TRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---N 446
Query: 569 VADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIP 628
+D GALFF+++ F+ L E+A P+ K R + Y P A A+ + IP
Sbjct: 447 TSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIP 506
Query: 629 LSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTL 688
I+ES ++ + Y+ + F A R F L F LFR IG++ +T A T
Sbjct: 507 FKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTP 566
Query: 689 GTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERW--------- 739
LL + + GF I + + + W YYV+P+ Y ++++NEF R+
Sbjct: 567 AAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSG 626
Query: 740 --------SKPVSDPKIHEP----TVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNIL 787
+ V EP G LK F N W G + GFT+ F +
Sbjct: 627 GGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFV 685
Query: 788 FIAAIQFLNPLGKAKPTVIEEDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGM 847
+I +F + ++ G K+ E + + + G
Sbjct: 686 YILLTEFNKGAKQKGEILVFRRGSLKRAKKA--------------GETSASNKNDIEAGE 731
Query: 848 VLPFQPLSLAFHHVNYSVDMPAEMKA-----------QGIEEDRLQLLRDVSGVFRPGVL 896
VL L+ VN DM E I++++ +L +V G +PG L
Sbjct: 732 VLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTL 791
Query: 897 TALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHV 956
TALMG SGAGKTTL++VLA R T G G + ++F R GY +Q D+H P
Sbjct: 792 TALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTS 851
Query: 957 TVYESLLFSAWLRLSSDIDSKTRKM-FVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKR 1015
TV ESL FSA+LR + SK+ KM +V+EV+ L+E+E +A+VG+PG +GL+ EQRKR
Sbjct: 852 TVRESLRFSAYLRQPKSV-SKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKR 909
Query: 1016 LTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1074
LTI VELVA P ++F+DEPTSGLD++ A + + +R D G+ ++CTIHQPS +FE
Sbjct: 910 LTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEE 969
Query: 1075 FDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQ 1134
FD LLL+++GGQ +Y G LG S ++ YFE G P+ NPA WMLE+ A
Sbjct: 970 FDRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPAEWMLEVIGAAPGAH 1028
Query: 1135 LNVDFADIYVRSSLYQRNEELIKELSTPAPGSSDLYFPT---QYSQPFLIQCKACFWKQR 1191
N D+ +++ SS YQ + + L + D P +Y+ Q K W+
Sbjct: 1029 ANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTF 1088
Query: 1192 QSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNA 1251
Q YWR P Y +F +TI L G F+ G Q LQN A++ A
Sbjct: 1089 QQYWRTPDYLYSKFFLTIFAALFIGFTFFKVG---TSLQGLQNQMFAVFMATVLFNPLIQ 1145
Query: 1252 NSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWK 1311
+ V+ RER + +S LA+ +Q+ +E+ Y ++ I Y +GF W
Sbjct: 1146 QYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205
Query: 1312 A-------KRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFL 1364
A +R F + M F+ F+ G M+++ P A+L+ ++ F G L
Sbjct: 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVL 1265
Query: 1365 IPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIE 1399
P ++P +W + Y SP + + L+++ + D+
Sbjct: 1266 APPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVP 1300
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 312 bits (802), Expect = 3e-98
Identities = 111/239 (46%), Positives = 145/239 (60%), Gaps = 47/239 (19%)
Query: 853 PLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMD 912
L + ++NY+V + + QLL ++SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 913 VLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSS 972
VLAGRKT G G+I I+G P ++ F R +GY EQ D+HSP++TV E+L FSA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLDK-NFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 973 DIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1032
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD LLL+KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 328 bits (843), Expect = 3e-98
Identities = 187/590 (31%), Positives = 295/590 (50%), Gaps = 42/590 (7%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYT-EGDISISGYPKNQAT 938
R LL++VSGV +PG L A+MG SGAGKTTLM+ LA R G G + ++G P +
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 939 FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNA 998
+S Y +Q+D+ P +TV E L+F A LR+ + K ++ VDEV+ + L N
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 999 MVGLPG-VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
+G+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 1058 RTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGY 1117
+T++CTIHQPS ++FE FD+++LM G+V Y G + V +F + G P N Y
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMA-EGRVAYLGS----PDQAVPFFSDL-GHPCPEN-Y 269
Query: 1118 NPATWMLE-IST-PTAEAQLNVDFADI---YVRSSLYQRNEELIKELSTPAPG---SSDL 1169
NPA + ++ ++ P +E + I + S + + S A G S+
Sbjct: 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSEN 329
Query: 1170 YFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQ 1229
Y+ + Q A + S RDP +R T++ +L GLI+ +G K
Sbjct: 330 MEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKG- 388
Query: 1230 QDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELI 1289
+QN+ GAL+ + + N V++V + E VF RE +G+Y AY ++ + EL
Sbjct: 389 --VQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELP 446
Query: 1290 YVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTP----APQI 1345
++ I Y M+G A F FL++V + T +G +I A +
Sbjct: 447 LFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTV 506
Query: 1346 GAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLY---GLVTSQVGDIEGNV 1402
G FL LF GF I IP++++W +LS W Y GL+ +Q D++ N+
Sbjct: 507 GPPFVIPFL----LFGGFFINSDSIPVYFKWLSYLS---WFRYGNEGLLINQWSDVD-NI 558
Query: 1403 EIPGSTATMTV---KQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFTLA 1449
E + T +++ ++ F+ L + L+ L+ +F F L
Sbjct: 559 ECTSANTTGPCPSSGEVILETLSFRNADLY----LDLIGLVILIFFFRLL 604
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 250 bits (640), Expect = 4e-76
Identities = 99/239 (41%), Positives = 146/239 (61%), Gaps = 45/239 (18%)
Query: 853 PLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMD 912
++L+F ++ +V + QLL++VSG +PG LTA+MG SGAGK+TL++
Sbjct: 1 GVTLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLN 53
Query: 913 VLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSS 972
LAGR+TG G++ I+G P ++ +F ++ GY Q+DI P +TV E+L+F+A LR
Sbjct: 54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110
Query: 973 DIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1032
GLS +RKR++IA+ELV+NPS++F+D
Sbjct: 111 ----------------------------------GLSGGERKRVSIALELVSNPSLLFLD 136
Query: 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
EPTSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+LLL+ + G+VIY G
Sbjct: 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 245 bits (628), Expect = 2e-69
Identities = 158/628 (25%), Positives = 272/628 (43%), Gaps = 67/628 (10%)
Query: 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGH--E 236
+ RK +LK+VSG+ KP + ++G GAGKTTL+ ALA + +K +G + G +
Sbjct: 35 RPRK-HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID 93
Query: 237 FKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
KE + AY+ Q+DL +TVRE + F M ++++EK
Sbjct: 94 AKEM--RAISAYVQQDDLFIPTLTVREHLMFQ-------AHLRMPRRVTKKEKRE----- 139
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR-RGVSGGQKKRVTTGEM 355
D VL+ LGL CA+T +G R +G+SGG++KR+
Sbjct: 140 -------------------RVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASE 180
Query: 356 LVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415
L+ +L DE ++GLDS + + + +K + + T I ++ QP+ E ++LFD IIL
Sbjct: 181 LLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGK-TIICTIHQPSSELFELFDKIIL 239
Query: 416 LSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYIS 475
++EG++ Y G ++ + FF +G CP+ ADF +V + P
Sbjct: 240 MAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLA-----------VIPGSENE 288
Query: 476 VSDFVQG----FSSFHVGQQ---LANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFG 528
+ ++ F+ +G+ N + + Y S F A
Sbjct: 289 SRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348
Query: 529 REWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEM-PVGNVADGAKFYGALFFSLINLM 587
R WL + R+ + + Q + +++ ++ + G GALF L N+
Sbjct: 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN----GALFLFLTNMT 404
Query: 588 FNGLAELAFTVF--RLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTI 645
F + VF LPVF ++ Y AY L + +PL I+ A++ +TY+ I
Sbjct: 405 FQNVFP-VINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMI 463
Query: 646 GFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIA 705
G A+ V ++A S I + +A T+G ++ + GGF I
Sbjct: 464 GLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFIN 523
Query: 706 KDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERWSKPVSDPKIHE-PTVGKLLLKSRGFF 764
D I + W Y+S YG ++IN++ D + S P+ G+++L++ F
Sbjct: 524 SDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFR 583
Query: 765 TVNYWYWICIGALFGFTILFNILFIAAI 792
+ ++ + L F +L A+
Sbjct: 584 NAD--LYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 1e-55
Identities = 80/212 (37%), Positives = 122/212 (57%), Gaps = 6/212 (2%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-TEGDISISGYPKNQATF 939
++L DVS G + A++G SG+GKTTL+D ++GR GG T G I +G P+ F
Sbjct: 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79
Query: 940 ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM 999
+ Y Q+DI P +TV E+L ++A LRL RK E + L +L
Sbjct: 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK-RVEDVLLRDL---ALTR 135
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
+G V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R
Sbjct: 136 IGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRI 195
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
V+ TIHQP D+F FD +LL+ G ++Y+G
Sbjct: 196 VILTIHQPRSDLFRLFDRILLLSSGE-IVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 3e-51
Identities = 61/214 (28%), Positives = 107/214 (50%), Gaps = 7/214 (3%)
Query: 1182 QCKACFWKQRQSYWRDPQYNAL-RFAVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALY 1240
Q KA ++ WRDP L R +++ L+FG +F N G L+
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFG----NLDTSLGGLNRPGLLF 57
Query: 1241 CAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVL 1300
++ F ++ + V ER V RE A+ +YS AY +++L+EL Q ++++L
Sbjct: 58 FSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLL 117
Query: 1301 ILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLF 1360
I+Y M+G RFF FL +++++ + + G+ I AL P+ + + + L L
Sbjct: 118 IVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLL 175
Query: 1361 SGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQ 1394
SGF IP +P W +W Y+L+P+ + + L ++
Sbjct: 176 SGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANE 209
|
Length = 210 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 2e-48
Identities = 131/442 (29%), Positives = 226/442 (51%), Gaps = 44/442 (9%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
+L V+G+ PG + A++G SG+GK+TL++ LAGR G G I + + R
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKR- 141
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGL 1002
+G+ Q+DI PH+TV E+L+F + LRL + + + + + V+ + L N ++G
Sbjct: 142 TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN 201
Query: 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1062
+ G+S +RKR++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261
Query: 1063 TIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATW 1122
++HQPS +++ FD +L++ G + ++ G G + + YFE+V P NPA +
Sbjct: 262 SMHQPSSRVYQMFDSVLVLSEG-RCLFFGK-GSDA---MAYFESVGFSPSFP--MNPADF 314
Query: 1123 MLEISTP-------TAEAQLNVDFADIYVRSSLY--------------QRNEELIKELST 1161
+L+++ + + NV + + ++L Q N + ST
Sbjct: 315 LLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSAST 374
Query: 1162 PAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWD 1221
SSD + + F I + K+R + +N LR I LL GL++W
Sbjct: 375 KEHRSSDRISISTWFNQFSILLQRSL-KER----KHESFNTLRVFQVIAAALLAGLMWWH 429
Query: 1222 KGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAF 1281
+ D+Q+ G L+ F G + + + V ER +F +ERA+GMY+ +Y
Sbjct: 430 SDFR-----DVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFM 484
Query: 1282 SQVL----IELIYVA-FQTVVY 1298
++++ +ELI F TV Y
Sbjct: 485 ARIVGDLPMELILPTIFLTVTY 506
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 6e-46
Identities = 67/214 (31%), Positives = 104/214 (48%), Gaps = 13/214 (6%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP--KNQATF 939
L VS PG + L+G +GAGKTTL+ +LAG T G+I + GY K A
Sbjct: 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKV 76
Query: 940 ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM 999
R GY Q P +TV E+L F A L S +++ R ++E+++L LE N
Sbjct: 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKANKK 133
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R G
Sbjct: 134 VR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGV 188
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093
+ + E D ++++ G++I G
Sbjct: 189 TILLSTHILEEAEELCDRVIILND-GKIIAEGTP 221
|
Length = 293 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 5e-42
Identities = 81/293 (27%), Positives = 141/293 (48%), Gaps = 51/293 (17%)
Query: 178 SKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEF 237
L VS V+P + LLGP GAGKTTLL LAG L +G+I G++
Sbjct: 13 KYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDV 69
Query: 238 KEFVPQ--RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKP 295
+ + R Y+ Q + E+TVRE ++F R G +S+ E E I
Sbjct: 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG----------LSKEEAEERI-- 117
Query: 296 DPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEM 355
+ +L+L GL+ A+ V R +SGG K+R++
Sbjct: 118 ----------------------EELLELFGLEDKANKKV-----RTLSGGMKQRLSIALA 150
Query: 356 LVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVS--LLQPAPEAYDLFDNI 413
L+ ++L++DE ++GLD + +I + ++++ +T ++S +L+ EA +L D +
Sbjct: 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRV 207
Query: 414 ILLSEGQIVYQGPREKVLEFFEYMGFKC--PDRKGVADFLQEVTSKKDQEQYW 464
I+L++G+I+ +G E++ E F G P+R +A+ L+ + K +E+
Sbjct: 208 IILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELA 260
|
Length = 293 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 8e-42
Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 8/215 (3%)
Query: 522 LFRACFGREWLLMKRNSFV-YIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYGALF 580
+A RE+L R+ + +++ Q +M+L+ TVF G G LF
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLLF 57
Query: 581 FSLINLMFNGLAELAFTVFR-LPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVC 639
FS++ F+ L ++ R V ++ Y P AY L ++ +P+S+L++ I++
Sbjct: 58 FSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLL 117
Query: 640 LTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVL 699
+ Y+ +G SR F L A L FI ++ + A+ +G LL + +L
Sbjct: 118 IVYFMVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLL 175
Query: 700 GGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEF 734
GF I D + ++ W YY++P+ Y A+ NEF
Sbjct: 176 SGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 1e-39
Identities = 72/249 (28%), Positives = 122/249 (48%), Gaps = 36/249 (14%)
Query: 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHE 236
+ + +IL DVS V+ ++ +LG G+GKTTLL A++G+++ +G+I + G
Sbjct: 14 KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73
Query: 237 FKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
K Q+ AY+ Q+D+ +TVRET+ ++ L S
Sbjct: 74 RKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILR--------LPRKSSD--------- 116
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
+ D +L+ A T +G + +G+SGG+++RV+ L
Sbjct: 117 -------------AIRKKRVEDVLLRD-----LALTRIGGNLVKGISGGERRRVSIAVQL 158
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416
+ KVL++DE ++GLDS T + + Q+ I I+++ QP + + LFD I+LL
Sbjct: 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRI-VILTIHQPRSDLFRLFDRILLL 217
Query: 417 SEGQIVYQG 425
S G+IVY G
Sbjct: 218 SSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 2e-39
Identities = 44/91 (48%), Positives = 61/91 (67%)
Query: 335 GDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEIT 394
G++ RG+SGG++KRV+ E LV A VL D + GLDSST +I K ++ M VL+ T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 395 TIVSLLQPAPEAYDLFDNIILLSEGQIVYQG 425
T VSL Q + E YDLFD +++L EG+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 2e-37
Identities = 143/568 (25%), Positives = 257/568 (45%), Gaps = 92/568 (16%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
IL V+G+ P + +LGP G+GK+TLL ALAG++ + TG I + + + +R
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILKR 141
Query: 245 TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMK 304
T +++Q+D+ + +TVRET+ F L + +
Sbjct: 142 T-GFVTQDDILYPHLTVRETLVFCS-----------LLRLPK------------------ 171
Query: 305 ATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTG-EMLVGPAKVL 363
+L Q+ L + V+ LGL C +T++G+ RG+SGG++KRV+ EML+ P+ +L
Sbjct: 172 --SLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-LL 228
Query: 364 LMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVY 423
++DE ++GLD++ +++ + + + T + S+ QP+ Y +FD++++LSEG+ ++
Sbjct: 229 ILDEPTSGLDATAAYRLVLTLGSLAQKGK-TIVTSMHQPSSRVYQMFDSVLVLSEGRCLF 287
Query: 424 QGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGF 483
G + +FE +GF ADFL ++ + Q +++P
Sbjct: 288 FGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKP------------- 334
Query: 484 SSFHVGQQLA---NDLAVPYDKSRTHPAALV---KNKYGISNMDLFRAC--------FGR 529
+V Q L N L P K+ + G ++ R+ F +
Sbjct: 335 ---NVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391
Query: 530 EWLLMKR-------NSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYGALFFS 582
+L++R SF + Q+ +L+A +++ ++ D G LFF
Sbjct: 392 FSILLQRSLKERKHESF-NTLRVFQVIAAALLAGLMWWHSDF-----RDVQDRLGLLFFI 445
Query: 583 LINLMFNGLAELAFTVFRLP----VFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWV 638
I F G+ +VF P +F K+R Y +Y + V +P+ ++ I++
Sbjct: 446 SI---FWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFL 502
Query: 639 CLTYYTIGFAP--AASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLV 696
+TY+ G P A L L + + S L L +G+ A+T+ T T+L
Sbjct: 503 TVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGL--ALGAAIMDAKKASTIVTVTMLAF 560
Query: 697 FVLGGFVIAKDDIEPFMIWGYYVSPMMY 724
+ GGF + K + M W Y+S Y
Sbjct: 561 VLTGGFYVHK--LPSCMAWIKYISTTFY 586
|
Length = 659 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 1e-36
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 38/220 (17%)
Query: 877 EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPK 934
++ +L+D SGV +PG + ++G G+G +TL+ LA R T G EGDI +G P
Sbjct: 16 GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPY 74
Query: 935 NQA--TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVEL 992
+ + Y + D+H P +TV E+L F+ +
Sbjct: 75 KEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK----------------------- 111
Query: 993 EPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
N V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R
Sbjct: 112 ---GNEFV-----RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRT 163
Query: 1053 TVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
D T +++Q S +I++ FD++L++ G+ IY G
Sbjct: 164 MADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 4e-35
Identities = 46/102 (45%), Positives = 63/102 (61%), Gaps = 2/102 (1%)
Query: 174 RILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYC 233
+ KI ILKD SG+VKP M L+LG PG+G +TLL ALA + + ++ + G I Y
Sbjct: 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYN 70
Query: 234 GHEFKEF--VPQRTCAYISQNDLHFGEMTVRETMDFSGRCLG 273
G +KEF Y+S+ D+HF +TVRET+DF+ RC G
Sbjct: 71 GIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 4e-31
Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 17/211 (8%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP--KNQATFAR 941
+ D+S G + L+G +GAGKTT + +L G T G I+GY ++ +
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQ 75
Query: 942 VSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001
GYC Q D +TV E L F A L+ K V+ ++ ++ L N
Sbjct: 76 SLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKRAR 132
Query: 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+++
Sbjct: 133 -----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRSII 186
Query: 1062 CTIHQPSIDIFEAF-DELLLMKRGGQVIYAG 1091
T H S+D EA D + +M G++ G
Sbjct: 187 LTTH--SMDEAEALCDRIAIMSD-GKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 9e-31
Identities = 72/215 (33%), Positives = 106/215 (49%), Gaps = 16/215 (7%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP--KNQ 936
+ + L VS PG+ L+G +GAGKTTLM +LA + G I I G K
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLKQP 67
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT 996
R GY Q P+ TV E L + AWL+ I SK K VDEV++LV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
+G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 1057 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
R V+ + H D+ +++ ++ G++++ G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 6e-29
Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 23/211 (10%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP---KNQAT 938
L D+S + G ++G +G+GK+TL+ +L G G T G++ + G +
Sbjct: 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKE 72
Query: 939 FARVSGYCEQNDIHSP-----HVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE 993
R G QN P TV E + F + + + R V+E ++LV LE
Sbjct: 73 LRRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLE 125
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
L + LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 126 GLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180
Query: 1054 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
G+T++ H + E D +++++ G
Sbjct: 181 KAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-26
Identities = 40/67 (59%), Positives = 48/67 (71%), Gaps = 3/67 (4%)
Query: 739 WSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPL 798
WSKP S T+G+ +LKSRG FT YWYWI +GAL GFTILFNILF A+ +LNPL
Sbjct: 1 WSKPFSG---SNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPL 57
Query: 799 GKAKPTV 805
GK++ V
Sbjct: 58 GKSQAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 17/212 (8%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L DVS +PG A++G +GAGK+TL+ + G T G I + G P + R+
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLEK-ERKRI- 70
Query: 944 GYCEQN---DIHSPHVTVYESLLFSAWLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAM 999
GY Q D P ++V + +L + SK K VDE ++ V L L +
Sbjct: 71 GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ 129
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R G T
Sbjct: 130 IGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMT 184
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
++ H + + E FD +LL+ R V+ +G
Sbjct: 185 ILVVTHDLGL-VLEYFDRVLLLNRT--VVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 40/109 (36%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 166 AENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLK 225
N+ +++ PSK K Q+LK+VSG KP +T ++GP GAGK+TLL ALAG+ L
Sbjct: 6 FRNLTVTVKSSPSKSGK-QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLG 63
Query: 226 LTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGV 274
++G++ G + ++ Y+ Q+D+ +TVRET+ F+ + G+
Sbjct: 64 VSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 29/223 (13%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG---YPKNQATF 939
+L D+S G +T ++G +G+GK+TL+ LAG G++ + G +
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKEL 74
Query: 940 ARVSGYCEQNDIHSPHVTVYESLLF------SAWLRLSSDIDSKTRKMFVDEVMDLVELE 993
A+ Y Q+ +TVYE +L + R S + + V+E ++L+ LE
Sbjct: 75 AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI-----VEEALELLGLE 129
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1052
L + VD LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 130 HLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDL 184
Query: 1053 TVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGQVIYAGP 1092
+ G TVV +H D+ A D L+L+K G V P
Sbjct: 185 NREKGLTVVMVLH----DLNLAARYADHLILLKDGKIVAQGTP 223
|
Length = 258 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-24
Identities = 65/213 (30%), Positives = 98/213 (46%), Gaps = 29/213 (13%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR 941
+ L D+S PG AL+G SG GKTTL+ ++AG + G+I I G
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDG-----RDVTG 66
Query: 942 VS------GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL 995
V G Q+ PH+TV E++ F L+L ++ R V E+++LV LE L
Sbjct: 67 VPPERRNIGMVFQDYALFPHLTVAENIAFG--LKLRGVPKAEIRAR-VRELLELVGLEGL 123
Query: 996 TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-V 1054
N LS Q++R+ +A L PS++ +DEP S LDA+ + ++
Sbjct: 124 LNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178
Query: 1055 DTGRTVVCTIHQPSIDIFEAF---DELLLMKRG 1084
+ G T + H D EA D + +M G
Sbjct: 179 ELGITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 59/216 (27%), Positives = 105/216 (48%), Gaps = 17/216 (7%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR 941
+L D+S G +TAL+G +GAGK+TL+ + G + G+I I G P +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRL 75
Query: 942 VSGYCEQN---DIHSPHVTVYESLLFSAWLRLS--SDIDSKTRKMFVDEVMDLVELEPLT 996
GY Q D P +TV + +L + + ++ K ++ VDE ++ V +E L
Sbjct: 76 RIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEK-VDEALERVGMEDLR 133
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
+ +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 134 DRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188
Query: 1057 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
G+TV+ H + + FD ++ + R +I +GP
Sbjct: 189 GKTVLMVTHDLGL-VMAYFDRVICLNRH--LIASGP 221
|
Length = 254 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 5e-23
Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 24/223 (10%)
Query: 872 KAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG 931
K G +++Q L+ VS G A++G SG+GK+TL+++L G T G++ + G
Sbjct: 8 KTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDG 65
Query: 932 YPKNQATFARVS-------GYCEQNDIHS--PHVTVYESLLFSAWLRLSSDIDSKTRKMF 982
++ + ++ G+ Q+ + P +T E++ L L+ + K R+
Sbjct: 66 TDISKLSEKELAAFRRRHIGFVFQS--FNLLPDLTALENVELP--LLLAG-VPKKERRER 120
Query: 983 VDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
+E+++ V L N LS Q++R+ IA L +P II DEPT LD+
Sbjct: 121 AEELLERVGLGDRLNHYPS-----ELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175
Query: 1043 AAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
VM +R + G T+V H P ++ E D ++ ++ G
Sbjct: 176 GKEVMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 5e-23
Identities = 61/207 (29%), Positives = 93/207 (44%), Gaps = 18/207 (8%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
+L D+S G + AL G +GAGKTTL +LAG + G I ++G P +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG--LIKESSGSILLNGKPIKAKERRKS 72
Query: 943 SGYCEQN-DIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVD-EVMDLVELEPLTNAMV 1000
GY Q+ D +V E LL L+ + + + D ++ L E PL+
Sbjct: 73 IGYVMQDVDYQLFTDSVREELLLG--LKELDAGNEQAETVLKDLDLYALKERHPLS---- 126
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
LS Q++RL IA L++ ++ DEPTSGLD + V +R G+ V
Sbjct: 127 -------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAV 179
Query: 1061 VCTIHQPSIDIFEAFDELLLMKRGGQV 1087
+ H + + D +LL+ G V
Sbjct: 180 IVITHDYEF-LAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 9e-23
Identities = 54/212 (25%), Positives = 83/212 (39%), Gaps = 57/212 (26%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP-----KNQ 936
+L DVS G + AL+G SG+GK+TL+ +AG + G I I G
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTDLEDEL 71
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT 996
R G Q+ PH+TV E++
Sbjct: 72 PPLRRRIGMVFQDFALFPHLTVLENIAL-------------------------------- 99
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
GLS Q++R+ +A L +P ++ +DEPTS LD V +++
Sbjct: 100 ----------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQ 149
Query: 1057 -GRTVVCTIHQPSIDIFEAF---DELLLMKRG 1084
G TVV H D+ EA D +++++ G
Sbjct: 150 LGITVVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 95.5 bits (239), Expect = 2e-22
Identities = 46/203 (22%), Positives = 77/203 (37%), Gaps = 49/203 (24%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP--KNQATFAR 941
L D+S G + L+G +GAGKTTL+ ++ G G+I + G K R
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKR 73
Query: 942 VSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001
GY + ++TV E+L S
Sbjct: 74 RIGYLPEEPSLYENLTVRENLKLSG----------------------------------- 98
Query: 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T++
Sbjct: 99 -----G----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTIL 149
Query: 1062 CTIHQPSIDIFEAFDELLLMKRG 1084
+ H + D + ++ G
Sbjct: 150 LSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 8e-22
Identities = 59/225 (26%), Positives = 99/225 (44%), Gaps = 29/225 (12%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV- 942
L+DVS PG AL+G SGAGK+TL+ L G T G + I G N+ +
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINKLKGKALR 74
Query: 943 -----SGYCEQNDIHSPHVTVYESLL---------FSAWLRLSSDIDSKTRKMFVDEVMD 988
G Q ++V E++L + + L + ++ ++
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE--KQRAL--AALE 130
Query: 989 LVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
V L D LS Q++R+ IA L+ P +I DEP + LD ++ VM
Sbjct: 131 RVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 1049 TVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
++ + G TV+ ++HQ + E D ++ +K G++++ GP
Sbjct: 186 LLKRINREEGITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 1e-20
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHE 236
P K K Q+L ++SG VKP +T L+G GAGKTTLL LAG+ + +TG+I G
Sbjct: 14 PVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV-ITGEILINGRP 72
Query: 237 FKEFVPQRTCAYISQNDLHFGEMTVRETMDFSG--RCLGVGTR 277
+ QR+ Y+ Q D+H +TVRE + FS R L V R
Sbjct: 73 LDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQR 114
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 1e-20
Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 19/222 (8%)
Query: 872 KAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YTEGDIS 928
K G+ ++++ L+DV+ G A++G SG+GK+TL+++L G + T G
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 929 ISGYPKNQATFARVS--GYCEQNDIHS--PHVTVYESLLFSAWLRLSSDIDSKTRKMFVD 984
++ + + R G+ QN + P +TV E++ + + RK +
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAG---KSAGRRKRAAE 123
Query: 985 EVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
E+++++ LE P LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 124 ELLEVLGLEDRLLKK--KPSE--LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 1045 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085
V+ +R + G+T++ H P ++ + D ++ +K G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 1e-20
Identities = 61/216 (28%), Positives = 106/216 (49%), Gaps = 16/216 (7%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP-KNQA 937
++Q +RDVS G +T L+G +GAGKTTL+ ++A G ++I G
Sbjct: 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDP 70
Query: 938 TFAR--VSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL 995
+F R + + +++ +T E+L + A L S + K R + E+ ++L
Sbjct: 71 SFVRRKIGVLFGERGLYA-RLTARENLKYFARLNGLSRKEIKAR---IAELSKRLQLLEY 126
Query: 996 TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
+ VG ST ++++ IA LV +PSI+ +DEPTSGLD R ++ +
Sbjct: 127 LDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN 181
Query: 1056 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
GR V+ + H + EA + +++ G+V+ G
Sbjct: 182 EGRAVIFSSH--IMQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-20
Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 26/225 (11%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP---- 933
R L+DVS G L+G +G+GK+TL+ +L G T G++ + G
Sbjct: 14 PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSSE 71
Query: 934 KNQATFARVSGYCEQNDIHSPHV-----TVYESLLFSAWLRLSSDIDSKTRKMFVDEVMD 988
K+ + G QN P TV + + F L + + V E ++
Sbjct: 72 KSLLELRQKVGLVFQN----PDDQLFGPTVEDEVAFGL-ENLGLPREEIEER--VAEALE 124
Query: 989 LVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
LV LE L + LS Q++R+ IA L P I+ +DEPT+GLD + ++
Sbjct: 125 LVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE 179
Query: 1049 TVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
++ + G+T++ H + E D ++++ G+++ G
Sbjct: 180 LLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 2e-20
Identities = 66/213 (30%), Positives = 106/213 (49%), Gaps = 18/213 (8%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP----K 934
L D+S + G L AL+G SGAGK+TL+ ++AG +T G I ++G
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVS 70
Query: 935 NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS--SDIDSKTRKMFVDEVMDLVEL 992
N A R G+ Q+ PH+TV +++ F +R S+ + + R V+E++ LV+L
Sbjct: 71 NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR---VEELLRLVQL 127
Query: 993 EPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
E L + P LS QR+R+ +A L P ++ +DEP LDA+ + R +R
Sbjct: 128 EGLADRY---P--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182
Query: 1053 TVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
D G T V H + E D ++++ +G
Sbjct: 183 LHDRLGVTTVFVTHDQE-EALELADRVVVLNQG 214
|
Length = 345 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 2e-20
Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 24/222 (10%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK--- 934
D L D++ + G LTAL+G SGAGK+TL+++L G T+G+I ++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 935 NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
+ + + + QN + T+ E++L + + + + +D L
Sbjct: 389 SPEAWRKQISWVSQNP-YLFAGTIRENILLAR--------PDASDEE-IIAALDQAGLLE 438
Query: 995 LTNAMVGLPGV-----DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
GL V GLS Q +RL +A L++ S++ +DEPT+ LDA I+++
Sbjct: 439 FVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQA 498
Query: 1050 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
++ +TV+ H+ D +A D ++++ G+++ G
Sbjct: 499 LQELAK-QKTVLVITHRLE-DAADA-DRIVVLDN-GRLVEQG 536
|
Length = 559 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 2e-20
Identities = 64/223 (28%), Positives = 101/223 (45%), Gaps = 29/223 (13%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTE-GDISISGYPKNQATFA 940
+ D+S + G L+G SG GKTTL+ ++AG + + G I+ P +
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK---- 76
Query: 941 RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
R G Q+ PH+TV E++ F L++ + K V+E ++LV LE +
Sbjct: 77 RPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFADRK- 133
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1059
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++ + G T
Sbjct: 134 ----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT 189
Query: 1060 VVCTIHQPSIDIFEAF---DELLLMKRGG--QV-----IYAGP 1092
V H D EA D + +M G QV IY P
Sbjct: 190 FVYVTH----DQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228
|
Length = 352 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 3e-20
Identities = 64/253 (25%), Positives = 100/253 (39%), Gaps = 55/253 (21%)
Query: 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLT-GKIKYCGHEF 237
KK + D+S V + LLG GAGKTT L L G +L+ T G G+
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG----ELRPTSGTAYINGYSI 66
Query: 238 ---KEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIK 294
++ Q Y Q D F E+TVRE + F R G + + E +
Sbjct: 67 RTDRKAARQSLG-YCPQFDALFDELTVREHLRFYARLKG----------LPKSEIKE--- 112
Query: 295 PDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGE 354
E++ ++ L + A SGG K++++
Sbjct: 113 ---EVELLLRVLGLTDKANKRARTL-----------------------SGGMKRKLSLAI 146
Query: 355 MLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEI--TTIVSLLQPAPEAYDLFDN 412
L+G VLL+DE ++GLD ++ I + ++ I TT EA L D
Sbjct: 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTT-----HSMDEAEALCDR 201
Query: 413 IILLSEGQIVYQG 425
I ++S+G++ G
Sbjct: 202 IAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 3e-20
Identities = 62/246 (25%), Positives = 100/246 (40%), Gaps = 48/246 (19%)
Query: 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFK 238
L D+S +K L++GP G+GK+TLL L G L +G++ G +
Sbjct: 10 PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDLT 66
Query: 239 EFVPQ---RTCAYISQN-DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIK 294
+ + R + QN D F TV E + F LG+ EI R +EA
Sbjct: 67 KLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPE-----EEIEERVEEA--- 118
Query: 295 PDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGE 354
L+L+GL+ D +SGGQK+RV
Sbjct: 119 --------------------------LELVGLEGLRDRSPFT-----LSGGQKQRVAIAG 147
Query: 355 MLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNII 414
+L +LL+DE + GLD + ++ + +K++ T I+ +L D +I
Sbjct: 148 VLAMDPDILLLDEPTAGLDPAGRRELLELLKKL-KAEGKTIIIVTHDLD-LLLELADRVI 205
Query: 415 LLSEGQ 420
+L +G+
Sbjct: 206 VLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 3e-20
Identities = 67/256 (26%), Positives = 114/256 (44%), Gaps = 53/256 (20%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLT-GKIKYCGHEFKEFVP 242
+L+D+S V+ +T L+GP GAGK+TLL A+ G LK + G+IK G ++
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG----LLKPSSGEIKIFGKPVRKRRK 73
Query: 243 QRTCAYISQN---DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
+ Y+ Q D F +TV++ + LG + +++++KE
Sbjct: 74 RLRIGYVPQKSSVDRSFP-ITVKDVVL-----LGRYGKKGWFRRLNKKDKEKV------- 120
Query: 300 DAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGP 359
D L+ +G++ D +G+ +SGGQK+RV L
Sbjct: 121 ------------------DEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQN 157
Query: 360 AKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSL---LQPAPEAYDLFDNIILL 416
+LL+DE TG+D + +I +K++ E T++ + L FD +I L
Sbjct: 158 PDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVM---AYFDRVICL 212
Query: 417 SEGQIVYQGPREKVLE 432
++ GP E+VL
Sbjct: 213 -NRHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 4e-20
Identities = 34/86 (39%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSL 399
RG+SGG++KRV+ LV +L +DE ++GLDSS+ Q+ ++++ T I S+
Sbjct: 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSI 168
Query: 400 LQPAPEAYDLFDNIILLSEGQIVYQG 425
QP+ E ++LFD ++LLS+G+++Y G
Sbjct: 169 HQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 89.0 bits (222), Expect = 4e-20
Identities = 51/215 (23%), Positives = 85/215 (39%), Gaps = 52/215 (24%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYTEGDISISGYPKNQ---A 937
+L D+S G + ++G +GAGK+TL+ LAG K G+I + G
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---GEILLDGKDLASLSPK 69
Query: 938 TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTN 997
AR Y Q ++L+ L L +
Sbjct: 70 ELARKIAYVPQ-------------------------------------ALELLGLAHLAD 92
Query: 998 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-T 1056
+ LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 93 R-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARER 147
Query: 1057 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
G+TVV +H ++ D ++L+K G+++ G
Sbjct: 148 GKTVVMVLHDLNL-AARYADRVILLK-DGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 5e-20
Identities = 60/224 (26%), Positives = 107/224 (47%), Gaps = 18/224 (8%)
Query: 872 KAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISI 929
K + +Q + VS +PG +T L+G +GAGKTT + +LAG G+ +
Sbjct: 9 KRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----V 64
Query: 930 SGYPKNQATFA--RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVM 987
G+ + R G+ + +T E+L + A L + R ++E+
Sbjct: 65 DGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR---LEELA 121
Query: 988 DLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
D + +E L + VG G ST R+++ IA LV +P ++ +DEPT+GLD A +
Sbjct: 122 DRLGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
+R G+ ++ + H ++ D ++++ R G+V+Y G
Sbjct: 177 EFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 90.2 bits (225), Expect = 5e-20
Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 38/199 (19%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDI-----SISGYPKNQ 936
L DVS RPG + L+G +GAGKTTL +++ +G T G + I+G P ++
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLI----SGFLRPTSGSVLFDGEDITGLPPHE 71
Query: 937 A-------TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMF------- 982
TF + P +TV E+++ +A R S + +
Sbjct: 72 IARLGIGRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARER 123
Query: 983 VDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
+E+++ V L L + G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 124 AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEE 178
Query: 1043 AAIVMRTVRNTVDTGRTVV 1061
+ +R + G TV+
Sbjct: 179 TEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-19
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 21/223 (9%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA---- 937
Q L++++ PG A++G SGAGK+TL+ + + G I + G +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKK 73
Query: 938 --TFARVSGYCEQNDIHSPHVTVYESLL-----FSAWLRLSSDIDSKTRKMFVDEVMDLV 990
R G Q+ +TV E++L + R S+ K ++ V
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV 133
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
L D LS Q++R+ IA L P +I DEP + LD + + VM +
Sbjct: 134 GLADKAYQR-----ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYL 188
Query: 1051 RN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
+ + G TV+ +HQ +D+ + + + ++ + G++++ G
Sbjct: 189 KRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 2e-19
Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 28/210 (13%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP-------KNQATFARVSGY 945
+T + G SGAGK+TL+ +AG + G I ++G N R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79
Query: 946 CEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGV 1005
Q PH+ V E+L F L+ + + ++ VDE++DL+ L+ L N
Sbjct: 80 VFQQYALFPHLNVRENLAFG--LKRKRN---REDRISVDELLDLLGLDHLLNR-----YP 129
Query: 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTI 1064
LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+
Sbjct: 130 AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT 189
Query: 1065 HQPSIDIFEAF---DELLLMKRGGQVIYAG 1091
H S EA D +++M G++ Y G
Sbjct: 190 HDLS----EAEYLADRIVVM-EDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 3e-19
Identities = 66/256 (25%), Positives = 106/256 (41%), Gaps = 48/256 (18%)
Query: 180 KRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCG---HE 236
K+Q ++DVS + +T LLG GAGKTTLL +A L D +GK+ G
Sbjct: 12 GSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVR 68
Query: 237 FKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
FV ++ + L + +T RE + + R L +SR+E +A
Sbjct: 69 DPSFVRRKIGVLFGERGL-YARLTARENLKYFAR----------LNGLSRKEIKA----- 112
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
+ K L L D VG S G K++V L
Sbjct: 113 -------------------RIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARAL 148
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416
V +L++DE ++GLD T + ++KQ+ + E ++ E L D +I+L
Sbjct: 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDRVIVL 206
Query: 417 SEGQIVYQGPREKVLE 432
+G++V +G E +
Sbjct: 207 HKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 3e-19
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1064
V LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 1065 HQPSIDIFEAFDELLLMKRG 1084
H P A D ++++K G
Sbjct: 138 HDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 6e-19
Identities = 65/251 (25%), Positives = 112/251 (44%), Gaps = 44/251 (17%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKL-TGKIKYCGHEFKEFVPQ 243
IL D+S + +T +LGP G+GK+TLL LAG LK +G++ G + P+
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL----LKPKSGEVLLDGKDIASLSPK 72
Query: 244 ---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEID 300
+ AY+ Q+ +TV E + G P
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYEL-------------------VLL-----GRYP----- 103
Query: 301 AYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA 360
++ ++ + L+LLGL+ AD V + +SGG+++RV L
Sbjct: 104 -HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQET 157
Query: 361 KVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420
+LL+DE ++ LD + ++ + ++ + +T ++ L A D++ILL +G+
Sbjct: 158 PILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGK 216
Query: 421 IVYQGPREKVL 431
IV QG E+VL
Sbjct: 217 IVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 2e-18
Identities = 69/209 (33%), Positives = 98/209 (46%), Gaps = 25/209 (11%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA-RV 942
L+DV+ G L+G SG GK+TL+ ++AG + T G+I I G R
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRG 76
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRLSS--DIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
QN PH+TVYE++ F LR +ID + V EV L+ LE L N
Sbjct: 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR-----VKEVAKLLGLEHLLNR-- 129
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGR 1058
P LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ + G
Sbjct: 130 -KPL--QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLGT 185
Query: 1059 TVVCTIHQPSIDIFEA---FDELLLMKRG 1084
T + H D EA D +++M G
Sbjct: 186 TTIYVTH----DQVEAMTLADRIVVMNDG 210
|
Length = 338 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 2e-18
Identities = 62/214 (28%), Positives = 105/214 (49%), Gaps = 21/214 (9%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATF 939
+ L D+S G AL+G SG GK+TL+ ++AG + T G++ + G P
Sbjct: 16 AVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTGPGP 73
Query: 940 ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM 999
R GY Q D P +TV +++ L+ +++ R +E+++LV L NA
Sbjct: 74 DR--GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARER---AEELLELVGLSGFENAY 128
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 1058
P LS R+R+ +A L +P ++ +DEP S LDA + + + +TG+
Sbjct: 129 ---PH--QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGK 183
Query: 1059 TVVCTIHQPSIDIFEAF---DELLLM-KRGGQVI 1088
TV+ H DI EA D ++++ R G+++
Sbjct: 184 TVLLVTH----DIDEAVFLADRVVVLSARPGRIV 213
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 3e-18
Identities = 72/247 (29%), Positives = 109/247 (44%), Gaps = 46/247 (18%)
Query: 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF 240
++ L D+S V+P LLGP G GKTTLL +AG D +G+I G +
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGV 67
Query: 241 VP-QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
P +R + Q+ F +TV E + F + GV AEI R +E
Sbjct: 68 PPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPK-----AEIRARVREL-------- 114
Query: 300 DAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGP 359
L+L+GL+ + +SGGQ++RV L
Sbjct: 115 ---------------------LELVGLEGLLNRYP-----HELSGGQQQRVALARALARE 148
Query: 360 AKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTI-VSLLQPAPEAYDLFDNIILLSE 418
+LL+DE + LD+ ++ + +K++ L ITTI V+ Q EA L D I +++E
Sbjct: 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ--EEALALADRIAVMNE 206
Query: 419 GQIVYQG 425
G+IV G
Sbjct: 207 GRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 3e-18
Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 48/259 (18%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP- 242
LKDVS ++ LL+GP G+GK+TLL L G L +G++ G +
Sbjct: 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSL 74
Query: 243 ---QRTCAYISQN-DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
++ + QN D TV + + F LG+ P E
Sbjct: 75 LELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL--------------------PREE 114
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVG 358
I+ L+L+GL+ D + +SGGQK+RV +L
Sbjct: 115 IEE--------------RVAEALELVGLEELLD-----RPPFNLSGGQKQRVAIAGVLAM 155
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418
++LL+DE + GLD ++ + +K++ T I+ + D +++L +
Sbjct: 156 GPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD-LELVLEYADRVVVLDD 214
Query: 419 GQIVYQGPREKVLEFFEYM 437
G+I+ G ++ E +
Sbjct: 215 GKILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 3e-18
Identities = 74/271 (27%), Positives = 118/271 (43%), Gaps = 52/271 (19%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV 241
++LKDV+ ++ +LLGP G GK+TLL +AG + +G+I G + +
Sbjct: 15 SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLP 71
Query: 242 PQ-RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEID 300
P+ R A + QN + MTV E + F + R AEI +R KE
Sbjct: 72 PEKRGIAMVFQNYALYPHMTVYENIAFGLK-----LRGVPKAEIDKRVKE---------- 116
Query: 301 AYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA 360
V KLLGL+ + ++ +SGGQ++RV LV
Sbjct: 117 -------------------VAKLLGLE-----HLLNRKPLQLSGGQRQRVALARALVRKP 152
Query: 361 KVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420
KV L+DE + LD+ + +K++ L TTI EA L D I+++++G+
Sbjct: 153 KVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGR 211
Query: 421 IVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
I G ++ ++ P VA F+
Sbjct: 212 IQQVGTPLEL--------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 5e-18
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 16/192 (8%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG-----YPKNQAT 938
L ++ G L+G SGAGK+TL+ ++ + T G I ++G
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSDLRGRAIP 74
Query: 939 FARVS-GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTN 997
+ R G Q+ P VYE++ F+ L ++ + RK V ++LV L
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFA--LEVTGVPPREIRKR-VPAALELVGLSHKHR 131
Query: 998 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
A+ LS +++R+ IA +V +P+I+ DEPT LD +M ++ G
Sbjct: 132 ALP-----AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 1058 RTVVCTIHQPSI 1069
TVV H +
Sbjct: 187 TTVVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 5e-18
Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 27/235 (11%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L D++ G A++G SG GK+TL+ ++AG + T G++ + G P
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPVTGPGPDI-- 74
Query: 944 GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLP 1003
GY Q D P +TV +++ LR + E+++LV L + P
Sbjct: 75 GYVFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDK---YP 128
Query: 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 1062
LS R+R+ IA L P ++ +DEP LDA + + +T +TV+
Sbjct: 129 HQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLL 186
Query: 1063 TIHQPSIDIFEAF---DELLLMKRGGQVIY-------AGPLGRQSQKLVEYFEAV 1107
H D+ EA D ++++ I P R + +E E +
Sbjct: 187 VTH----DVDEAVYLADRVVVLSNRPGRIGEELEIDLPRPRIRGDPEFLELREEL 237
|
Length = 248 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 6e-18
Identities = 62/230 (26%), Positives = 104/230 (45%), Gaps = 28/230 (12%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YTEG-DISISGYPKNQ 936
+L+ V R G + A++G SG+GK+TL+ ++ G R G +G DIS
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDIS-GLSEAEL 72
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT 996
R G Q+ +TV+E++ F LR + ++ +E+ ++V LE L
Sbjct: 73 YRLRRRMGMLFQSGALFDSLTVFENVAF--PLR-------EHTRLSEEEIREIV-LEKL- 121
Query: 997 NAMVGLPGV-----DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
VGL G LS +KR+ +A L +P ++ DEPT+GLD A+ ++ +R
Sbjct: 122 -EAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIR 180
Query: 1052 NTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG--RQSQ 1098
+ G T + H F D + ++ G+++ G R S
Sbjct: 181 SLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTPEELRASD 228
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 8e-18
Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 30/205 (14%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK--- 934
R LR VS PG AL+G SGAGK+TL+++L G TEG I+++G P
Sbjct: 332 PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLG--FVDPTEGSIAVNGVPLADA 389
Query: 935 NQATFARVSGYCEQNDIHSPHV---TVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVE 991
+ ++ + Q+ P + T+ E++ + +SD + + E ++
Sbjct: 390 DADSWRDQIAWVPQH----PFLFAGTIAENIRLAR--PDASDAE-------IREALERAG 436
Query: 992 LEPLTNA-------MVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
L+ A +G G GLS Q +RL +A + + ++ +DEPT+ LDA A
Sbjct: 437 LDEFVAALPQGLDTPIGEGGA-GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEA 495
Query: 1045 IVMRTVRNTVDTGRTVVCTIHQPSI 1069
V+ +R + GRTV+ H+ ++
Sbjct: 496 EVLEALRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 1e-17
Identities = 54/232 (23%), Positives = 93/232 (40%), Gaps = 65/232 (28%)
Query: 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLA 915
+ F +V++S +L+DVS +PG A++G SG+GK+TL+ +L
Sbjct: 1 IEFKNVSFS-----------YPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL 49
Query: 916 GRKTGGYTEGDISISGYPK---NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSS 972
T G+I I G + + + Y Q + LFS +R
Sbjct: 50 RLYD--PTSGEILIDGVDLRDLDLESLRKNIAYVPQ-----------DPFLFSGTIR--- 93
Query: 973 DIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1032
+ + LS QR+R+ IA L+ +P I+ +D
Sbjct: 94 -----------ENI---------------------LSGGQRQRIAIARALLRDPPILILD 121
Query: 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
E TS LD A+++ +R + G+TV+ H+ S D ++++ G
Sbjct: 122 EATSALDPETEALILEALRA-LAKGKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 1e-17
Identities = 63/250 (25%), Positives = 111/250 (44%), Gaps = 44/250 (17%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
Q L DV+ V + LLGP G+GK+TLL +AG D +G+I+ G + +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHAR 70
Query: 244 -RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAY 302
R ++ Q+ F +TVR+ + F EI + K
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAFG-------------LEIRKHPKA------------ 105
Query: 303 MKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKV 362
K + +L+L+ L +GD+ +SGGQ++RV L +V
Sbjct: 106 ---------KIKARVEELLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 363 LLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIV 422
LL+DE LD+ ++ +++++ + +TT V + EA ++ D I+++S G+I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTT-VFVTHDQEEAMEVADRIVVMSNGKIE 210
Query: 423 YQGPREKVLE 432
G ++V +
Sbjct: 211 QIGSPDEVYD 220
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 2e-17
Identities = 61/233 (26%), Positives = 105/233 (45%), Gaps = 21/233 (9%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYTEGDISISGYPKNQAT 938
Q L+DV+ G + A++G SGAGK+TL+ L G +G + I+ +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77
Query: 939 FARVS-GYCEQNDIHSPHVTVYESLLF------SAWLRLSSDIDSKTRKMFVDEVMDLVE 991
R G Q P ++V E++L S W L + + +D
Sbjct: 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA------ 131
Query: 992 LEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
LE + LS Q++R+ IA LV P II DEP + LD +A VM ++
Sbjct: 132 LERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILK 191
Query: 1052 --NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVE 1102
N D G TV+ +HQ +D+ + + + ++ + G++++ GP + + ++
Sbjct: 192 DINQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGPASELTDEALD 241
|
Length = 258 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 2e-17
Identities = 49/194 (25%), Positives = 79/194 (40%), Gaps = 16/194 (8%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKN 935
++L+ ++ G + AL+G +GAGK+TL+ L G R G D Y +
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 936 QATFARVS-GYCEQN---DIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVE 991
R G Q+ + + V + + F L L R+ V E + V
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGP-LNLGLSEAEVERR--VREALTAVG 116
Query: 992 LEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
L LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 117 ASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 1052 NTVDTGRTVVCTIH 1065
G TVV + H
Sbjct: 172 RLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 11/209 (5%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT 938
L DVS G L AL+G SG+GKTTL+ ++AG + G I G
Sbjct: 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDATDVP 70
Query: 939 FA-RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTR-KMFVDEVMDLVELEPLT 996
R G+ Q+ H+TV++++ F ++ S+ + + V E++ LV+L+ L
Sbjct: 71 VQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA 130
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD- 1055
+ P LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 131 DR---YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE 185
Query: 1056 TGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
T V H + E D +++M +G
Sbjct: 186 LHVTTVFVTHDQE-EALEVADRVVVMNKG 213
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 2e-17
Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 22/223 (9%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPKNQA---T 938
L DVS RPG AL+G +GAGK+TL +L T Y EG IS++G+ +A
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 939 FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNA 998
AR+ +Q + ++V ++L + A L S +++ R + E++ + L A
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGL-----A 123
Query: 999 MVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1057
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 124 ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 1058 RTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKL 1100
+V+ H +D EA D L+++ R G+V+ G
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHR-GRVLADGAAAELRGAT 223
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 3e-17
Identities = 59/198 (29%), Positives = 87/198 (43%), Gaps = 32/198 (16%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYTEGDISISGYPKNQATFA 940
L VS PG A++G SG+GK+TL+ LAG G T + +S +++
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDE--VR 408
Query: 941 RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
R C Q D H TV E+L + D +E+ +E L + +
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATD-------EELWAALERVGLADWLR 455
Query: 1001 GLPGVDGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
LP DGL T +R+RL +A L+A+ I+ +DEPT LDA A ++
Sbjct: 456 ALP--DGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLED 513
Query: 1050 VRNTVDTGRTVVCTIHQP 1067
+ +GRTVV H
Sbjct: 514 LLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 4e-17
Identities = 69/253 (27%), Positives = 107/253 (42%), Gaps = 41/253 (16%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEF-----K 238
+ LKDVS + P L+GP GAGK+TLL L G ++ +G + G + K
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 239 EFVPQRT-CAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
R I Q ++V E + SGR T + + EK+ +
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENV-LSGRLGRRSTWRSLFGLFPKEEKQRAL---- 126
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLV 357
L+ +GL A DQ+ SGGQ++RV L+
Sbjct: 127 ---------------------AALERVGLLDKAYQRA-DQL----SGGQQQRVAIARALM 160
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417
K++L DE LD +++ Q+ +K++ IT IVSL Q A + D I+ L
Sbjct: 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLK 219
Query: 418 EGQIVYQGPREKV 430
+G+IV+ GP ++
Sbjct: 220 DGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 5e-17
Identities = 66/249 (26%), Positives = 107/249 (42%), Gaps = 57/249 (22%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKE----- 239
+L+DVS VKP ++GP GAGK+TLL A+ G L +G I+ G ++
Sbjct: 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRI 70
Query: 240 -FVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
+VPQR D F ++VR+ + +G+ + +S+ +K
Sbjct: 71 GYVPQRRSI-----DRDF-PISVRDVV-----LMGLYGHKGLFRRLSKADKAKV------ 113
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVG 358
D L+ +GL AD +G+ +SGGQ++RV LV
Sbjct: 114 -------------------DEALERVGLSELADRQIGE-----LSGGQQQRVLLARALVQ 149
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSL--LQPAPEAYDLFDNIILL 416
+LL+DE G+D T I + ++++ +T +V L E FD ++LL
Sbjct: 150 DPDLLLLDEPFAGVDPKTQEDIYELLREL-RREGMTILVVTHDLGLVLEY---FDRVLLL 205
Query: 417 SEGQIVYQG 425
+V G
Sbjct: 206 -NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 7e-17
Identities = 59/239 (24%), Positives = 90/239 (37%), Gaps = 54/239 (22%)
Query: 195 PSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGH-----EFKEFVP--QRTCA 247
+T + G GAGK+TLL +AG D G I G K +P QR
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIG 78
Query: 248 YISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATA 307
+ Q F + VRE + F G + + E E+ +
Sbjct: 79 LVFQQYALFPHLNVRENLAF-------GLKRKRNREDRISVD--------ELLDLLGLDH 123
Query: 308 LAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDE 367
L + Y +L SGG+K+RV L ++LL+DE
Sbjct: 124 LLNR-------YPAQL-------------------SGGEKQRVALARALAAQPELLLLDE 157
Query: 368 ISTGLDSSTTFQICKYMKQMVHVLEITTI-VSLLQPAPEAYDLFDNIILLSEGQIVYQG 425
+ LD + Q+ +KQ+ L I I V+ EA L D I+++ +G++ Y G
Sbjct: 158 PFSALDRALRLQLLPELKQIKKNLNIPVIFVT--HDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 7e-17
Identities = 61/223 (27%), Positives = 105/223 (47%), Gaps = 23/223 (10%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG---YPKN 935
++ V PG LT L+G +G+GK+TL+ +LAG G + ++G + +
Sbjct: 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL--RPDAGTVDLAGVDLHGLS 69
Query: 936 QATFARVSGYCEQNDIHSPHVTVYESLLF------SAWLRLSSDIDSKTRKMFVDEVMDL 989
+ AR EQ+ + +TV + + S W S D+ VD +
Sbjct: 70 RRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW-AGDSPHDAAV----VDRALAR 124
Query: 990 VELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
EL L + + LS +R+R+ +A L P ++ +DEPT+ LD RA +
Sbjct: 125 TELSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLAL 179
Query: 1050 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
VR TG TVV +H +++ ++ + +++ GG+V+ AGP
Sbjct: 180 VRELAATGVTVVAALH--DLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 8e-17
Identities = 56/211 (26%), Positives = 105/211 (49%), Gaps = 14/211 (6%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATF 939
R+ L D+S G + L+G +GAGKTT + ++ G G++ G P + A
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLDIAAR 69
Query: 940 ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM 999
R+ GY + P + V + L++ A L+ +++ R +DE ++ +EL N
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR---IDEWLERLELSEYANKR 125
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
V + LS ++++ ++ +P ++ +DEP SGLD ++ +R G+T
Sbjct: 126 V-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180
Query: 1060 VVCTIHQPSIDIFEAF-DELLLMKRGGQVIY 1089
V+ + HQ +++ E D +LL+ +G V+Y
Sbjct: 181 VILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 8e-17
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATFA 940
L +VS R G A++G G+GK+TL+ +LAG T G + + G Q A
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDIRQLDPADLR 77
Query: 941 RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
R GY Q D+ + T+ +++ A L+ D + ++ EL +T+ +
Sbjct: 78 RNIGYVPQ-DVTLFYGTLRDNITLGA--PLADD----------ERILRAAELAGVTDFVN 124
Query: 1001 GLP---------GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
P GLS QR+ + +A L+ +P I+ +DEPTS +D + + +R
Sbjct: 125 KHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184
Query: 1052 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087
+ +T++ H+PS+ + D +++M G V
Sbjct: 185 QLL-GDKTLIIITHRPSLL--DLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-16
Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 43/228 (18%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPKNQ---A 937
+L D+S PG A++G SG+GK+TL+ +L G Y +G I + G N A
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLA 543
Query: 938 TFARVSGYCEQNDIHSPHVTVYESLLFSAWLR----LSSDIDSKTRKMFVDEVMDLVELE 993
+ R GY Q+ LFS +R L + + +E+++ +L
Sbjct: 544 SLRRQVGYVLQDP-----------FLFSGSIRENIALGNPEATD------EEIIEAAQLA 586
Query: 994 PLTNAMVGLP-GVD--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
+ LP G D LS QR+RL +A L++ P I+ +DE TS LD A
Sbjct: 587 GAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA 646
Query: 1045 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
I+++ + + GRTV+ H+ S + D ++++ G+++ G
Sbjct: 647 IILQNLL-QILQGRTVIIIAHRLS--TIRSADRIIVLD-QGKIVEQGS 690
|
Length = 709 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 1e-16
Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 14/177 (7%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP-KNQATFARVS-GYCEQN 949
+ G L+G +GAGKTT + +L G G IS+ G P ++A AR G Q
Sbjct: 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEPVPSRARHARQRVGVVPQF 88
Query: 950 DIHSPHVTVYESLL-FSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGL 1008
D P TV E+LL F + LS+ + R + V +++ +LE +A VG L
Sbjct: 89 DNLDPDFTVRENLLVFGRYFGLSA---AAARAL-VPPLLEFAKLENKADAKVG-----EL 139
Query: 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
S ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ + G+T++ T H
Sbjct: 140 SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 2e-16
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 24/209 (11%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYP--KNQATF 939
+R VS R G + L+G +GAGKTT + +L + T G +++G+ +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREV 71
Query: 940 ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM 999
R G Q+ +T +E+L A L + R+ +DE++D V L + +
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARL---YGVPGAERRERIDELLDFVGLLEAADRL 128
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1058
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 VK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 1059 TVVCTIHQPSIDIFEA---FDELLLMKRG 1084
T++ T H + EA D + ++ G
Sbjct: 184 TILLTTH----YMEEAEQLCDRVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 25/197 (12%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YTEGDISISGYPKNQA 937
L +S G L G +G+GKTTL+ ++AG G GDI +
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAE-AC 75
Query: 938 TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTN 997
+ G+ +N + P +TV E+L F W + + ++ V L PL +
Sbjct: 76 HYL---GH--RNAMK-PALTVAENLEF--WAAFLGGEEL-----DIAAALEAVGLAPLAH 122
Query: 998 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G
Sbjct: 123 ----LPFGY-LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQG 177
Query: 1058 RTVVCTIHQPSIDIFEA 1074
V+ H P + + A
Sbjct: 178 GIVIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 2e-16
Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 29/211 (13%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP--KNQATFAR 941
+ V+ R G + +G +GAGKTT + +L T G ++GY + R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRR 66
Query: 942 VSGYCEQNDIHSPHVTVYESLLFSAWLRLS-----SDIDSKTRKMFVDEVMDLVELEPLT 996
G Q + +V E L + L + + +E+++L EL
Sbjct: 67 SIGIVPQ------YASVDEDL--TGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA 118
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
+ VG S R+RL IA L+ P ++F+DEPT+GLD R + +R +
Sbjct: 119 DRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE 173
Query: 1057 GRTVVCTIHQPSIDIFEA---FDELLLMKRG 1084
G T++ T H + EA D + ++ G
Sbjct: 174 GVTILLTTH----YMEEADKLCDRIAIIDHG 200
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 61/220 (27%), Positives = 93/220 (42%), Gaps = 32/220 (14%)
Query: 858 FHHV--NYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLA 915
FH+V Y + A L DVS R G L G SGAGKTTL+ +L
Sbjct: 4 FHNVSKAYPGGVAA--------------LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLY 49
Query: 916 GRKTGGYTEGDISISG-----YPKNQATFARVS-GYCEQNDIHSPHVTVYESLLFSAWLR 969
G T + G + I+G Q R G Q+ P TVYE++ L
Sbjct: 50 GALTP--SRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALP--LE 105
Query: 970 LSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSII 1029
+ + + ++ V + V LE +A P LS +++R+ IA +V +P ++
Sbjct: 106 VRGKKEREIQRR-VGAALRQVGLEHKADA---FPEQ--LSGGEQQRVAIARAIVNSPPLL 159
Query: 1030 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
DEPT LD + ++ ++ G TV+ H S+
Sbjct: 160 LADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 2e-16
Identities = 58/210 (27%), Positives = 89/210 (42%), Gaps = 19/210 (9%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
+ DVS R G L+G SG+GK+TL +LAG + G I G +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRR 364
Query: 944 G-----YCEQNDIHS--PHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT 996
Q+ S P +TV + L LR+ R+ V E+++LV L P
Sbjct: 365 LRRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP-- 420
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD- 1055
+ P LS QR+R+ IA L P ++ +DEP S LD A V+ +++ +
Sbjct: 421 EFLDRYP--HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE 478
Query: 1056 TGRTVVCTIHQPSIDIFEAF-DELLLMKRG 1084
G T + H + + D + +M G
Sbjct: 479 LGLTYLFISH--DLAVVRYIADRVAVMYDG 506
|
Length = 539 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 4e-16
Identities = 56/159 (35%), Positives = 78/159 (49%), Gaps = 11/159 (6%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP-KNQATFARV 942
L VS + G L+G SG GKTTL+ ++AG +T T G+I + G N R
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITNLPPHKRP 73
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGL 1002
QN PH+TV+E++ F LRL + K V E +DLV+LE N
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFG--LRLKK-LPKAEIKERVAEALDLVQLEGYANRKP-- 128
Query: 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 129 ---SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 5e-16
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 17/187 (9%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKNQATF 939
++L D+S + G + +G +GAGKTT M ++ G + G E Y KN
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG--EITFDGKSYQKNIEAL 71
Query: 940 ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM 999
R+ E + P++T E+L A L +DEV+D+V L+
Sbjct: 72 RRIGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKDSAKKK 123
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
V G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G T
Sbjct: 124 VK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 1060 VVCTIHQ 1066
V+ + H
Sbjct: 179 VLISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 9e-16
Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 25/215 (11%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPKNQATF-- 939
L VS RPG + AL+G +GAGK+TLM +L +G Y G+I I G P ++
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKIL----SGVYPPDSGEILIDGKPVAFSSPRD 79
Query: 940 ARVSG----YCEQNDIHSPHVTVYESLLFSAWL-RLSSDIDSKTRKMFVD--EVMDLVEL 992
A +G + E + + P+++V E++ R ID + M E++ + L
Sbjct: 80 ALAAGIATVHQELSLV--PNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLARLGL 135
Query: 993 EPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
+ + +VG LS QR+ + IA L + ++ +DEPT+ L + + +R
Sbjct: 136 DIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRR 190
Query: 1053 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087
G ++ H+ ++FE D + +++ G V
Sbjct: 191 LKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 13/207 (6%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATF 939
Q L DV+ G L AL+G SG+GK+TL+ ++AG + G I ++G +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDATRVHA 69
Query: 940 A-RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNA 998
R G+ Q+ H+TV +++ F +R K V+E+++LV+LE L +
Sbjct: 70 RDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDR 126
Query: 999 MVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
P + LS QR+R+ +A L P ++ +DEP LDA+ + +R D
Sbjct: 127 Y---P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH 181
Query: 1059 -TVVCTIHQPSIDIFEAFDELLLMKRG 1084
T V H + E D +++M G
Sbjct: 182 VTTVFVTHDQE-EAMEVADRIVVMSNG 207
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-15
Identities = 67/257 (26%), Positives = 112/257 (43%), Gaps = 57/257 (22%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ- 243
+L+D+S + P ++G G+GK+TLL L G G+I G + +
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLAS 544
Query: 244 --RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
R Y+ Q+ F ++RE + E + D EI
Sbjct: 545 LRRQVGYVLQDPFLFSG-SIRENIALG------------NPEAT----------DEEI-- 579
Query: 302 YMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA 360
++A LAG A +++ L +G DT VG+ +SGGQ++R+ L+
Sbjct: 580 -IEAAQLAG-----AHEFIENLPMGY----DTPVGE-GGANLSGGQRQRLALARALLSKP 628
Query: 361 KVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV-----SLLQPAPEAYDLFDNIIL 415
K+LL+DE ++ LD T I + + Q++ T I+ S ++ D II+
Sbjct: 629 KILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRLSTIR-------SADRIIV 679
Query: 416 LSEGQIVYQGPREKVLE 432
L +G+IV QG E++L
Sbjct: 680 LDQGKIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 2e-15
Identities = 56/186 (30%), Positives = 98/186 (52%), Gaps = 14/186 (7%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK-NQATFAR 941
++ D+S G L+G +GAGK+T+ +L G + G I++ G P ++A AR
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPVPSRARLAR 76
Query: 942 VS-GYCEQNDIHSPHVTVYESLL-FSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM 999
V+ G Q D P TV E+LL F + +S+ + + + +++ LE +
Sbjct: 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMST----REIEAVIPSLLEFARLESKADVR 132
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
V L LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T
Sbjct: 133 VAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT 187
Query: 1060 VVCTIH 1065
++ T H
Sbjct: 188 ILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 65/233 (27%), Positives = 100/233 (42%), Gaps = 23/233 (9%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYTEGDISISGYPKNQAT 938
+LR VS G +T ++G +G GKTTL+ L G K+G I+ P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----P 69
Query: 939 FARVS---GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL 995
R Y Q P +TV E+LL R + + ++ EL P+
Sbjct: 70 HERARAGIAYVPQGREIFPRLTVEENLLTGLAAL-------PRRSRKIPD--EIYELFPV 120
Query: 996 TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
M+G G D LS Q+++L IA LV P ++ +DEPT G+ + R +R
Sbjct: 121 LKEMLGRRGGD-LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179
Query: 1056 TGRTVVCTIHQPSIDI-FEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAV 1107
G + + Q +D E D +M+R G+V+ +G + V + AV
Sbjct: 180 EGGMAILLVEQ-YLDFARELADRYYVMER-GRVVASGAGDELDEDKVRRYLAV 230
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 3e-15
Identities = 69/243 (28%), Positives = 101/243 (41%), Gaps = 44/243 (18%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATF 939
+ +++ G L+G SG+GKTT M ++ + T G+I I G +
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI--NRLIEPTSGEIFIDGEDIREQDPVEL 73
Query: 940 ARVSGYCEQNDIHSPHVTVYE------SLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE 993
R GY Q PH+TV E LL W + + + DE++ LV L+
Sbjct: 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADELLALVGLD 124
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT---- 1049
P A P LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 125 PAEFAD-RYP--HELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRDQLQE 176
Query: 1050 --VRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGQVIYAGP---LGRQSQKLV 1101
R + G+T+V H DI EAF D + +MK G V P L + V
Sbjct: 177 EFKRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFV 232
Query: 1102 EYF 1104
F
Sbjct: 233 AEF 235
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 51/200 (25%), Positives = 81/200 (40%), Gaps = 15/200 (7%)
Query: 870 EMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDI 927
E + E L D+S G + G +GAGKTTL+ +LAG R G E
Sbjct: 4 EAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAG--EVYW 61
Query: 928 SISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVM 987
+ ++ + Y +T E+L F W R ++ T + E +
Sbjct: 62 QGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEAL 115
Query: 988 DLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
V L L + VG LS Q++R+ +A ++ + +DEP + LD A++
Sbjct: 116 AQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLT 170
Query: 1048 RTVRNTVDTGRTVVCTIHQP 1067
+ G V+ T HQP
Sbjct: 171 ALMAAHAAQGGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 4e-15
Identities = 65/270 (24%), Positives = 103/270 (38%), Gaps = 61/270 (22%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV 241
KIQ L+ VS V+ + LLG GAGKTTLL + G + +G+I + G +
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLP 71
Query: 242 PQRTC----AYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
P AY+ + F +TV E L +G R + + D
Sbjct: 72 PHERARLGIAYVPEGRRIFPRLTVEEN-------LLLGA--------YARRDKEAQERDL 116
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLV 357
E + Y L ++ A +SGG+++ + L+
Sbjct: 117 E-EVYELFPRLKERRNQRAGT-----------------------LSGGEQQMLAIARALM 152
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLL---QPAPEAYDLFDNII 414
K+LL+DE S GL I + + + + L +++L Q A A ++ D
Sbjct: 153 SRPKLLLLDEPSEGLAPK----IVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGY 208
Query: 415 LLSEGQIVYQGP------REKVLEFFEYMG 438
+L G+IV G V E Y+G
Sbjct: 209 VLENGRIVLSGTAAELLADPDVRE--AYLG 236
|
Length = 237 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 4e-15
Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 34/183 (18%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYTEGDISISGYPKNQAT 938
L+D+S G +TAL+G SG GK+TL+ +L G EG++ + G
Sbjct: 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD 73
Query: 939 FARVS-----GYCEQNDIHSP---HVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV 990
+ G Q P ++Y+++ + L E +D
Sbjct: 74 VDVLELRRRVGMVFQ----KPNPFPGSIYDNVAYGLRLHGIKL----------KEELDER 119
Query: 991 ELEPLTNAMVGLPG-------VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
E L L GLS Q++RL +A L P ++ +DEPTS LD +
Sbjct: 120 VEEALR--KAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIST 177
Query: 1044 AIV 1046
A +
Sbjct: 178 AKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 4e-15
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 14/183 (7%)
Query: 886 DVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP-KNQATFARVS- 943
+S G L+G +GAGK+T+ ++ G + G I++ G P +A AR
Sbjct: 59 GLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARI 116
Query: 944 GYCEQNDIHSPHVTVYESLL-FSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGL 1002
G Q D TV E+LL F + +S+ + + + +++ LE +A V
Sbjct: 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMST----REIEAVIPSLLEFARLESKADARVSD 172
Query: 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1062
LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++
Sbjct: 173 -----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILL 227
Query: 1063 TIH 1065
T H
Sbjct: 228 TTH 230
|
Length = 340 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 5e-15
Identities = 66/218 (30%), Positives = 97/218 (44%), Gaps = 23/218 (10%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATFA 940
+ DV+ G L+G SG+GKTT + ++ T G+I I G +
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLDPVELR 74
Query: 941 RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
R GY Q PH+TV E++ L D + K DE++DLV L+P +
Sbjct: 75 RKIGYVIQQIGLFPHLTVAENIATVPKL---LGWDKERIKKRADELLDLVGLDP-SEYAD 130
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNTVDTG 1057
P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++ G
Sbjct: 131 RYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE--LG 186
Query: 1058 RTVVCTIHQPSIDIFEAF---DELLLMKRGGQVIYAGP 1092
+T+V H DI EA D + +M G V Y P
Sbjct: 187 KTIVFVTH----DIDEALKLADRIAVMDAGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 6e-15
Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 57/250 (22%)
Query: 178 SKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEF 237
S K+ +IL D+S + + L G GAGKTTL LAG + + +G I G
Sbjct: 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPI 64
Query: 238 KEFVPQRTCAYISQN-DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
K +++ Y+ Q+ D +VRE
Sbjct: 65 KAKERRKSIGYVMQDVDYQLFTDSVRE--------------------------------- 91
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
E+ +K ++ VLK L L ++ +SGGQK+R+ L
Sbjct: 92 -ELLLGLKELDAGNEQAE----TVLKDLDLYALK-----ERHPLSLSGGQKQRLAIAAAL 141
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQM----VHVLEITTIVSLLQPAPEAYDLFDN 412
+ +L+ DE ++GLD ++ + ++++ V+ IT L + D
Sbjct: 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFL------AKVCDR 195
Query: 413 IILLSEGQIV 422
++LL+ G IV
Sbjct: 196 VLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 7e-15
Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 34/215 (15%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPKNQATFAR 941
L+D++ +PG A++G +GAGKTTL+++L Y +G I I G +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLL----MRFYDPQKGQILIDGIDIRDISRKS 74
Query: 942 VS---GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNA 998
+ G Q ++ LFS + + + +EV++ + +
Sbjct: 75 LRSMIGVVLQ-----------DTFLFSGTIMENIRLGRPNATD--EEVIEAAKEAGAHDF 121
Query: 999 MVGLP-GVD--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
++ LP G D LS +R+ L IA ++ +P I+ +DE TS +D ++
Sbjct: 122 IMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEA 181
Query: 1050 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
+ + GRT + H+ S I A D++L++ G
Sbjct: 182 LEKLMK-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 8e-15
Identities = 64/212 (30%), Positives = 100/212 (47%), Gaps = 16/212 (7%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGY-P-KNQATF-A 940
L+ +S G + +G +GAGKTT + +L+G T G++ ++G P K + F
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLR 94
Query: 941 RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
R+ Q + V +S L D+ K +DE+ +L++LE L +
Sbjct: 95 RIGVVFGQKTQLWWDLPVIDSFYL---LAAIYDLPPARFKKRLDELSELLDLEELLDT-- 149
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 1059
V LS QR R IA L+ P I+F+DEPT GLD A + ++ + G T
Sbjct: 150 ---PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTT 206
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
V+ T H DI EA +L+ G+++Y G
Sbjct: 207 VLLTSHYMK-DI-EALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 9e-15
Identities = 64/250 (25%), Positives = 105/250 (42%), Gaps = 54/250 (21%)
Query: 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF 240
K + L VS L M LLGP GAGKTTL+ LA +G I+ G + +
Sbjct: 11 GKKRALDGVS-LTLGPGMYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQ 66
Query: 241 VP--QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
+R Y+ Q + TVRE +D+ G+ P E
Sbjct: 67 PQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI--------------------PSKE 106
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVG 358
+ A + D VL+L+ L A +G +SGG ++RV + LVG
Sbjct: 107 VKARV--------------DEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVG 147
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQM---VHVLEITTIVSLLQPAPEAYDLFDNIIL 415
+L++DE + GLD + + ++ V+ T IV ++ L + + +
Sbjct: 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVE------SLCNQVAV 201
Query: 416 LSEGQIVYQG 425
L++G++V++G
Sbjct: 202 LNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 67/253 (26%), Positives = 104/253 (41%), Gaps = 41/253 (16%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEF-----K 238
Q LK+++ + P ++GP GAGK+TLL + ++ +G I G + K
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 239 EFVPQRT-CAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
+ R I Q+ +TV E + GR T +L S +KE
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLGRFSEEDKE------- 124
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLV 357
AL L+ +GL A DQ+ SGGQ++RV L
Sbjct: 125 --------RAL----------SALERVGLADKAYQRA-DQL----SGGQQQRVAIARALA 161
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417
++L DE LD T+ Q+ Y+K++ IT I++L Q A D I+ L
Sbjct: 162 QQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ-VDLAKKYADRIVGLK 220
Query: 418 EGQIVYQGPREKV 430
G+IV+ G ++
Sbjct: 221 AGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 72/254 (28%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD---DDLKLTGK--IKYCGHEFK 238
Q LKDV+ + M ++GP GAGK+TLL +L G +D ++ G K G E +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77
Query: 239 EFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
+ +R I Q ++V E + GR LG + + L + +E +A
Sbjct: 78 KL--RRDIGMIFQQFNLVPRLSVLENV-LLGR-LGYTSTWRSLFGLFSKEDKAQA----- 128
Query: 299 IDAYMKATAL--AGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
+DA + L A Q+ A T+ SGGQ++RV L
Sbjct: 129 LDALERVGILDKAYQR-----------------ASTL---------SGGQQQRVAIARAL 162
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416
V K++L DE LD + ++ +K + IT IV+L Q A D II L
Sbjct: 163 VQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDLAKKYADRIIGL 221
Query: 417 SEGQIVYQGPREKV 430
G+IV+ GP ++
Sbjct: 222 KAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 1e-14
Identities = 63/265 (23%), Positives = 98/265 (36%), Gaps = 69/265 (26%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV 241
K QIL VS V + LLG GAGKTTLL + G L +G I++ G +
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLP 68
Query: 242 PQRTC----AYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEI--------SRREK 289
P Y+ + F E+TV E + R L + RR++
Sbjct: 69 PHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQ 128
Query: 290 EAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKR 349
AG T+ SGG+++
Sbjct: 129 LAG---------------------------------------TL---------SGGEQQM 140
Query: 350 VTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVL--EITTIVSLLQPAPEAY 407
+ L+ K+LL+DE S GL I + + + + L E TI+ + Q A A
Sbjct: 141 LAIARALMSRPKLLLLDEPSEGLAPK----IVEEIFEAIRELRDEGVTILLVEQNARFAL 196
Query: 408 DLFDNIILLSEGQIVYQGPREKVLE 432
++ D +L G++V +G ++L
Sbjct: 197 EIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 77.3 bits (190), Expect = 1e-14
Identities = 70/259 (27%), Positives = 107/259 (41%), Gaps = 22/259 (8%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA-TFAR 941
+L D+S G L AL+G SG GKTTL+ +AG G I+I+ A R
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 942 VSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001
QN PH+ V +++ F + D R V D ++L L +A
Sbjct: 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER------VADALKLVGLGDAAAH 133
Query: 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRT 1059
LP LS ++R+ IA + P ++ +DEP S LDA A + + + T
Sbjct: 134 LPA--QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT 191
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRGG-------QVIYAGPLGRQSQKLVEYFEAVPGVPR 1112
++C H D D+ +MK G Q +Y P + E+ A +P
Sbjct: 192 ILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQALYDAPADGFA---AEFLGAANILPA 247
Query: 1113 ITNGYNPATWMLEISTPTA 1131
I G A ++++S A
Sbjct: 248 IALGITEAPGLVDVSCGGA 266
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 63/222 (28%), Positives = 99/222 (44%), Gaps = 32/222 (14%)
Query: 867 MPAEM--------KAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK 918
MPAE K G E L +L+ V V + G A++G SG+GK+TL+ VLAG
Sbjct: 1 MPAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60
Query: 919 TGGYTEGDISISGYPKNQ------ATF-ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS 971
+ G++ + G P ++ A AR G+ Q+ P++T E++ LR
Sbjct: 61 DP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE 118
Query: 972 SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFM 1031
S DS+ L+E L + P LS +++R+ +A P ++F
Sbjct: 119 SSADSRAG------AKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFA 170
Query: 1032 DEPTSGLD----ARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
DEPT LD + A ++ R + G T+V H P +
Sbjct: 171 DEPTGNLDRATGDKIADLLFALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 33/226 (14%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP---KN 935
D +L ++S +PG + ++G SG+GK+TL ++ G + + G+ +
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLALAD 70
Query: 936 QATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMD------- 988
A R G Q E++LF+ +R +I M ++ V++
Sbjct: 71 PAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLAGA 117
Query: 989 ---LVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
+ EL + +VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 118 HDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHA 176
Query: 1046 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
+MR + + GRTV+ H+ S + A D +++M+ G+++ G
Sbjct: 177 IMRNMHDICA-GRTVIIIAHRLST-VKNA-DRIIVME-KGRIVEQG 218
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 1e-14
Identities = 65/278 (23%), Positives = 131/278 (47%), Gaps = 29/278 (10%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR 941
+ + ++S PG + L+G +GAGKTT ++ G TEG+I+ +G P +Q R
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNR 73
Query: 942 VSGYC-EQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
+ GY E+ ++ P +TV + L + A L+ + + ++ +E +
Sbjct: 74 I-GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQK------KLQAWLERLEIVGKKT 125
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
+ LS ++++ ++ P ++ +DEP SGLD ++ + + G T+
Sbjct: 126 KK--IKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATI 183
Query: 1061 VCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL-------GR-----QSQKLVEYFEAVP 1108
+ + H+ + E D LL++K+G V+Y G + G+ +S +E +P
Sbjct: 184 IFSSHRME-HVEELCDRLLMLKKGQTVLY-GTVEDIRRSFGKKRLVIESDLSLEELANIP 241
Query: 1109 GVPRITNGYNPATWMLEISTPTAEAQLNVDFA-DIYVR 1145
G+ +IT + + W ++I T ++ + A D Y++
Sbjct: 242 GILKITETKDGS-WRIQIENETVAREIFQEVARDGYIQ 278
|
Length = 300 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 29/221 (13%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
L DVS G L ++G SG GKTTL++++AG T + G I ++G R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGL 1002
G QN+ P + V +++ F LR I+ R+ +++ LV LE + +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIW- 131
Query: 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTG 1057
LS R+R+ IA L P ++ +DEP LD A+ ++ + +TG
Sbjct: 132 ----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALD----ALTREQMQELLLDLWQETG 183
Query: 1058 RTVVCTIHQPSIDIFEAF---DELLLMKRG-GQVIYAGPLG 1094
+ V+ H DI EA L+++ G G+V+ PL
Sbjct: 184 KQVLLITH----DIEEALFLATRLVVLSPGPGRVVERLPLD 220
|
Length = 259 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 2e-14
Identities = 65/266 (24%), Positives = 110/266 (41%), Gaps = 43/266 (16%)
Query: 171 GSLR-ILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGK 229
GSL K+R I+ ++D+S + + LG GAGK+T L L G L L +GK
Sbjct: 24 GSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL---LPTSGK 80
Query: 230 IKYCGHEFKEFVPQRT-CAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRRE 288
++ G P R Y+ L G+ L E+L I
Sbjct: 81 VRVNG-----KDPFRRREEYLRSIGLVMGQKLQLWW------DLPALDSLEVLKLIYE-- 127
Query: 289 KEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKK 348
PD E + D++ ++L L + + +R+ +S GQ+
Sbjct: 128 -----IPDDEFAERL--------------DFLTEILDL----EGFLKWPVRK-LSLGQRM 163
Query: 349 RVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYD 408
R L+ P KVL +DE + GLD + I +++K+ + T++ +
Sbjct: 164 RAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE-YNEERQATVLLTTHIFDDIAT 222
Query: 409 LFDNIILLSEGQIVYQGPREKVLEFF 434
L D ++L+ +GQ+V+ G ++ E F
Sbjct: 223 LCDRVLLIDQGQLVFDGTLAQLQEQF 248
|
Length = 325 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 2e-14
Identities = 71/239 (29%), Positives = 114/239 (47%), Gaps = 26/239 (10%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK---NQATF 939
LL +S F G +T L+G +G+GK+TL+ +L GR +EG+I + P + F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPP-SEGEILLDAQPLESWSSKAF 83
Query: 940 ARVSGYCEQNDIHSPHVTVYESLLFS------AWLRLSSDIDSKTRKMFVDEVMDLVELE 993
AR Y Q + +TV E + A R + K V+E + LV L+
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK-----VEEAISLVGLK 138
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RN 1052
PL + +V D LS +R+R IA+ + + + +DEPTS LD V+ V R
Sbjct: 139 PLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193
Query: 1053 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVP 1111
+ + G TV+ +H I++ + + L+ RGG++I G + E E + G+P
Sbjct: 194 SQERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGTPAELMRG--ETLEQIYGIP 248
|
Length = 265 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 2e-14
Identities = 50/207 (24%), Positives = 79/207 (38%), Gaps = 53/207 (25%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATF 939
+LR+VS PG A++G SG+GK+TL ++ G T G + + G +Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADISQWDPNEL 74
Query: 940 ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM 999
GY Q+D LFS + + +
Sbjct: 75 GDHVGYLPQDDE-----------LFS------------------GSIAENI--------- 96
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
LS QR+RL +A L NP I+ +DEP S LD + + + G T
Sbjct: 97 --------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGAT 148
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRGGQ 1086
+ H+P + D +L+++ G
Sbjct: 149 RIVIAHRPE--TLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 27/224 (12%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT--- 938
+LL VS RPG + A++G +GAGK+TL+ L+G + G+++++G P N
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPPEE 72
Query: 939 FARVSGYCEQNDIHSPHVTVYESLLFSAW-LRLSSDIDSKTRKMFVDEVMDLVELEPLTN 997
AR QN + TV E + R + + R + + +L
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDER--IAAQALAATDLS---- 126
Query: 998 AMVGLPGVD--GLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRT 1049
GL G D LS +++R+ +A L V + +F+DEPTS LD +R
Sbjct: 127 ---GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL 183
Query: 1050 VRNTVDTGRTVVCTIHQPSIDIFEAF-DELLLMKRGGQVIYAGP 1092
R G V+ +H +++ + D ++L+ + G+VI +G
Sbjct: 184 ARQLAREGGAVLAVLH--DLNLAAQYADRIVLLHQ-GRVIASGS 224
|
Length = 259 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 3e-14
Identities = 79/289 (27%), Positives = 126/289 (43%), Gaps = 55/289 (19%)
Query: 172 SLRILPSKKR--KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGK 229
S+RI KKR L D+S +K + LLGP GAGK+TLL +AG D G+
Sbjct: 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGR 58
Query: 230 IKYCGHEFKEF----VPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEIS 285
I+ G + V R ++ Q+ F MTV + + F G+ R E +E
Sbjct: 59 IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAF-----GLKVRKERPSEAE 113
Query: 286 RREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGG 345
R + V +LL + + D+ +SGG
Sbjct: 114 IRAR------------------------------VEELL--RLVQLEGLADRYPAQLSGG 141
Query: 346 QKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPE 405
Q++RV L KVLL+DE LD+ ++ ++++++ L +TT+ E
Sbjct: 142 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-E 200
Query: 406 AYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEV 454
A +L D +++L++G+I GP ++V + P + VA FL EV
Sbjct: 201 ALELADRVVVLNQGRIEQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 3e-14
Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 35/248 (14%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGY-------PK 934
+L V G + A++G SG+GK+TL+ ++ G +G+I I G +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLSEEE 79
Query: 935 NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
R+ G Q +TV+E++ F LR + + + +LV L
Sbjct: 80 LYEIRKRM-GVLFQQGALFSSLTVFENVAFP--LREHTKLPES-------LIRELV-LMK 128
Query: 995 LTNAMVGLPGVDG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
L +VGL G LS RKR+ +A + +P ++F+DEPTSGLD +A ++
Sbjct: 129 L--ELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDE 186
Query: 1049 TVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG--RQSQK--LVEY 1103
+R D G TV+ H + D + ++ G+VI G S + ++
Sbjct: 187 LIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLAD-GKVIAEGTPEELLASDDPWVRQF 244
Query: 1104 FEAVPGVP 1111
F + P
Sbjct: 245 FNGIRDGP 252
|
Length = 263 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-14
Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 22/219 (10%)
Query: 875 GIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISI----- 929
G R Q+L D++ PG + L G SG+GKTTL+ ++ G ++ EG + +
Sbjct: 12 GHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQEL 69
Query: 930 SGYPKNQATFARVS-GYCEQ--NDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEV 986
G + + R + GY Q N + +T +++ + L L ++ + + +
Sbjct: 70 YGASEKELVQLRRNIGYIFQAHNLLGF--LTARQNVQMA--LELQPNLSYQEARERARAM 125
Query: 987 MDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
++ V L + P LS Q++R+ IA LV P ++ DEPT+ LD+++ V
Sbjct: 126 LEAVGLGDHLDY---YP--HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDV 180
Query: 1047 MRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
+ ++ + G T++ H I + D ++ M+ G
Sbjct: 181 VELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 3e-14
Identities = 66/255 (25%), Positives = 118/255 (46%), Gaps = 55/255 (21%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP--- 242
L +VS ++P ++G G+GK+TLL L G G + G + ++ P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 243 QRTCAYISQN-DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
+R Y+ Q+ L +G T+R+ + LG P + +
Sbjct: 538 RRNIGYVPQDPRLFYG--TLRDNI-----ALGA--------------------PYADDEE 570
Query: 302 YMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA 360
++A LAG T++V + GLD +G++ R +SGGQ++ V L+
Sbjct: 571 ILRAAELAG-----VTEFVRRHPDGLD----MQIGER-GRSLSGGQRQAVALARALLRDP 620
Query: 361 KVLLMDEISTGLDSSTTFQICKYMKQMVH---VLEITTIVSLLQPAPEAYDLFDNIILLS 417
+LL+DE ++ +D+ + + +K+ + ++ +T SLL DL D II++
Sbjct: 621 PILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLL-------DLVDRIIVMD 673
Query: 418 EGQIVYQGPREKVLE 432
G+IV GP+++VLE
Sbjct: 674 NGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 21/195 (10%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YTEGDISISGYPKNQ 936
L + DVS RPG + L+G +GAGKTTL +++ G + + G G I+G P ++
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGR-DITGLPPHR 75
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLL--FSAWLRLSSDIDSKTRKMFVDEVMDLVE--L 992
Q P +TV E++ A L LS + + E + L
Sbjct: 76 -IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELL 134
Query: 993 EPLTNAMVGLPG-----VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
E VGL LS Q++RL IA L P ++ +DEP +GL+ +
Sbjct: 135 E-----FVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA 189
Query: 1048 RTVRNTVDT-GRTVV 1061
+R D G T++
Sbjct: 190 ELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 4e-14
Identities = 70/255 (27%), Positives = 122/255 (47%), Gaps = 52/255 (20%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP- 242
L D++ +K ++T L+G GAGK+TLL L G L G+I+ G + ++ P
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 243 --QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEID 300
++ +++SQN F T+RE + +LA ++E I
Sbjct: 392 AWRKQISWVSQNPYLF-AGTIRENI--------------LLARPDASDEE--------II 428
Query: 301 AYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA 360
A + L ++V K GLD T++G+ G+SGGQ +R+ L+ PA
Sbjct: 429 AALDQAGLL--------EFVPKPDGLD----TVIGEG-GAGLSGGQAQRLALARALLSPA 475
Query: 361 KVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSL---LQPAPEAYDLFDNIILLS 417
+LL+DE + LD+ T I ++ + + + T++ + L+ A +A D I++L
Sbjct: 476 SLLLLDEPTAHLDAETEQII---LQALQELAKQKTVLVITHRLEDAADA----DRIVVLD 528
Query: 418 EGQIVYQGPREKVLE 432
G++V QG E++ E
Sbjct: 529 NGRLVEQGTHEELSE 543
|
Length = 559 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 4e-14
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 25/191 (13%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YTEG-DISISGYPK 934
+ Q+L VS G + AL+G +GAGKTTL+ + G G +G DI+
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT------ 65
Query: 935 NQATFARVS---GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV- 990
R GY + P +TV E+LL A+ R + ++ ++ V +L
Sbjct: 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP 120
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
L+ + G LS +++ L IA L++ P ++ +DEP+ GL + + +
Sbjct: 121 RLKERRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI 175
Query: 1051 RNTVDTGRTVV 1061
R D G T++
Sbjct: 176 RELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 73/275 (26%), Positives = 124/275 (45%), Gaps = 52/275 (18%)
Query: 178 SKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEF 237
SK K LK+VS V+ ++LGP G+GK+ LL +AG + D +GKI G +
Sbjct: 7 SKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDI 63
Query: 238 KEFVPQ-RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
P+ R +Y+ QN F MTV + + + G+ R EI R+ E
Sbjct: 64 TNLPPEKRDISYVPQNYALFPHMTVYKNIAY-----GLKKRKVDKKEIERKVLE------ 112
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
+ ++LG+D + ++ +SGG+++RV L
Sbjct: 113 -----------------------IAEMLGID-----HLLNRKPETLSGGEQQRVAIARAL 144
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416
V K+LL+DE + LD T ++ + +K++ T++ + EA+ L D + ++
Sbjct: 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFG-VTVLHVTHDFEEAWALADKVAIM 203
Query: 417 SEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
G+++ G E+V FK P + VA+FL
Sbjct: 204 LNGKLIQVGKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 4e-14
Identities = 59/197 (29%), Positives = 101/197 (51%), Gaps = 13/197 (6%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYTEGDISISGYPKNQAT 938
+++ DVS G + L+G +GAGKTT ++ G R G D IS P + A
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLH-AR 75
Query: 939 FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNA 998
R GY Q ++VY++L+ A L++ D+ ++ R+ +E+M+ +E L ++
Sbjct: 76 ARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDS 133
Query: 999 MVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
M LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G
Sbjct: 134 MG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGL 188
Query: 1059 TVVCTIH--QPSIDIFE 1073
V+ T H + ++ + E
Sbjct: 189 GVLITDHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 5e-14
Identities = 60/268 (22%), Positives = 107/268 (39%), Gaps = 49/268 (18%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-Q 243
+L D+S ++ + L+G G GKTTLL A+AG + LTG+I + P +
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPHK 78
Query: 244 RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYM 303
R A + QN F + V + + F G+ + A+I+ R +A
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAF-----GLRAQKMPKADIAERVADA------------ 121
Query: 304 KATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVL 363
LKL+GL + +SGG ++R+ + VL
Sbjct: 122 -----------------LKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL 159
Query: 364 LMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVY 423
L+DE + LD++ + + + + L TI+ + +A L D ++ +G++
Sbjct: 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA 219
Query: 424 QGPREKVLEFFEYMGFKCPDRKGVADFL 451
G + + + P A+FL
Sbjct: 220 HGEPQAL--------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 5e-14
Identities = 60/221 (27%), Positives = 111/221 (50%), Gaps = 30/221 (13%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP----KNQATF 939
L DVS G +T+++G +GAGK+TL+ + R G+I+I G ++
Sbjct: 17 LDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKELA 74
Query: 940 ARVSGYCEQNDIHSPHVTVYESLLFSAWL----RLSSDIDSKTRKMFVDEVMDLVELEPL 995
++S ++N I+S +TV + + F + RL+ + + ++E ++ + LE L
Sbjct: 75 KKLSILKQENHINS-RLTVRDLVGFGRFPYSQGRLTKE-----DRRIINEAIEYLHLEDL 128
Query: 996 TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
++ + D LS QR+R IA+ L + + +DEP + LD + + +M+ +R D
Sbjct: 129 SDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLAD 183
Query: 1056 T-GRTVVCTIHQPSIDIFEA---FDELLLMKRGGQVIYAGP 1092
G+T+V +H DI A D ++ +K G+V+ G
Sbjct: 184 ELGKTIVVVLH----DINFASCYSDHIVALKN-GKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 6e-14
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 31/222 (13%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYTEGDISISGYPKNQAT 938
+L D+S G +TAL+G +G GK+TL+ A R ++G GD IS Q
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLSSRQ-- 73
Query: 939 FARVSGYCEQNDIHSPHVTVYE------SLLFSAWLRLSSDIDSKTRKMFVDEVMDLVEL 992
AR Q+ + +TV E S S W RLS++ V++ M+ +
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVNQAMEQTRI 128
Query: 993 EPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
L + + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 129 NHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE 183
Query: 1053 TVDTGRTVVCTIHQPSIDIFEA---FDELLLMKRGGQVIYAG 1091
G+TVV +H D+ +A D L+++ G V+ G
Sbjct: 184 LNTQGKTVVTVLH----DLNQASRYCDHLVVLA-NGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 7e-14
Identities = 65/249 (26%), Positives = 105/249 (42%), Gaps = 46/249 (18%)
Query: 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFK 238
K+ +Q + VS VKP +T LLGP GAGKTT L LAG L+ D G G +
Sbjct: 14 VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVV 70
Query: 239 E--FVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
+ +R ++S + + +T RE +++ G
Sbjct: 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG----------------------- 107
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
L G + + + + LG++ D VG G S G +++V L
Sbjct: 108 -----------LKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARAL 151
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416
V VLL+DE +TGLD T + ++++Q+ I+ E L D +++L
Sbjct: 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRA--LGKCILFSTHIMQEVERLCDRVVVL 209
Query: 417 SEGQIVYQG 425
G++VY+G
Sbjct: 210 HRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 7e-14
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 19/164 (11%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYT-EGDISISG-----YPKNQ 936
LL +V+ G + LMG SG GK+TL+ + G G ++ G++ ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT 996
R G Q+ + PH++V ++LLF+ L + + R+ + ++ L
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERS---GLD 125
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
A P LS QR R+ + L+A P + +DEP S LD
Sbjct: 126 GAFHQDP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 8e-14
Identities = 63/251 (25%), Positives = 101/251 (40%), Gaps = 60/251 (23%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRT 245
L DVS V+P R LLGP GAGK+TL L G+I GH+ + P+
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 246 CAYI----SQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
A + Q L +++VR+ + + + L +SR E A I
Sbjct: 73 LARLGVVFQQPTLD-LDLSVRQNLRY----------HAALHGLSRAEARARIAEL----- 116
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
L LGL AD V R ++GG ++RV L+
Sbjct: 117 -------------------LARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPA 152
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQMVH-----VLEITTIVSLLQPAPEAYDLFDNIILL 416
+LL+DE + GLD ++ I +++ + VL T +V ++ D +++L
Sbjct: 153 LLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVL 205
Query: 417 SEGQIVYQGPR 427
G+++ G
Sbjct: 206 HRGRVLADGAA 216
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 8e-14
Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 25/169 (14%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YTEGDISISGYPKNQATF 939
L D+S PG L L+G +GAGKTTLMDV+ G R G +GD ++ P+++
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 940 ARVSGYCEQNDIHS--PHVTVYESLLFS--------AWLRLSSDIDSKTRKMFVDEVMDL 989
AR G + + ++TV E+L + A L + + R +DE++
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR---IDELLAT 134
Query: 990 VELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
+ L + + L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 135 IGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 9e-14
Identities = 65/238 (27%), Positives = 108/238 (45%), Gaps = 31/238 (13%)
Query: 871 MKAQGIEEDRLQL--------LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 922
M+ GI + + + LRD S G + AL+GV+G+GK+TL L G
Sbjct: 2 MQQAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--L 59
Query: 923 TEGDISISGYPKNQATFARVSGYCEQN---DIHSPHVTVYESLLFS-----AWLRLSSDI 974
G ISI G P QA + Y Q+ D P V V + ++ WLR +
Sbjct: 60 ASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFP-VLVEDVVMMGRYGHMGWLRRAKKR 118
Query: 975 DSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP 1034
D + V + V++ + +G LS Q+KR+ +A + +I +DEP
Sbjct: 119 D----RQIVTAALARVDMVEFRHRQIG-----ELSGGQKKRVFLARAIAQQGQVILLDEP 169
Query: 1035 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
+G+D + A ++ +R D G+T++ + H + E D +++K G V+ +GP
Sbjct: 170 FTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMVK--GTVLASGP 224
|
Length = 272 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 9e-14
Identities = 56/210 (26%), Positives = 101/210 (48%), Gaps = 23/210 (10%)
Query: 893 PGV-LTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA-------TFARVSG 944
PG +TA+ G SG+GKTTL+ ++AG EG+I ++G + R G
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78
Query: 945 YCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPG 1004
Y Q PH++V +L + R++ + V++L+ + L + LPG
Sbjct: 79 YVFQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHL---LGRLPG 130
Query: 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTVDTGRTVVCT 1063
LS +++R+ I L+++P ++ MDEP + LD R I+ R + G ++
Sbjct: 131 --RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYV 188
Query: 1064 IHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093
H ++ D +++++ G+V AGP+
Sbjct: 189 SHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 1e-13
Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 58/260 (22%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRT 245
L DVS V+P + L+GP GAGKTTL ++G L +G + + G + P
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEI 72
Query: 246 CAY-IS---QNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
I Q F E+TV E + + + T +L +RRE+
Sbjct: 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQA---RTGSGLLLARARREERE---------- 119
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
+ A +L+ +GL AD G+ +S GQ++R+ L K
Sbjct: 120 -ARERAEE----------LLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPK 163
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQMV----------HVLEITTIVSLLQPAPEAYDLFD 411
+LL+DE + GL+ T ++ + ++++ H +++ L D
Sbjct: 164 LLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV------------VMSLAD 211
Query: 412 NIILLSEGQIVYQGPREKVL 431
+ +L +G+++ +G ++V
Sbjct: 212 RVTVLDQGRVIAEGTPDEVR 231
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 71/252 (28%), Positives = 114/252 (45%), Gaps = 50/252 (19%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ-R 244
L DVS + + LLGP G+GKTTLL +AG D +G I + G + + Q R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQER 74
Query: 245 TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMK 304
++ Q+ F MTV + + F R + S R EA I+ K
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLR----------VKPRSERPPEAEIRA--------K 116
Query: 305 ATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLL 364
L LKL+ LD + D+ +SGGQ++RV L KVLL
Sbjct: 117 VHEL------------LKLVQLD-----WLADRYPAQLSGGQRQRVALARALAVEPKVLL 159
Query: 365 MDEISTGLDSSTTFQICKYMKQMVHVLEITTI-VSLLQPAPEAYDLFDNIILLSEGQI-- 421
+DE LD+ ++ ++++++ L +TT+ V+ Q EA ++ D ++++++G+I
Sbjct: 160 LDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ--EEALEVADRVVVMNKGRIEQ 217
Query: 422 ------VYQGPR 427
VY P
Sbjct: 218 VGTPDEVYDHPA 229
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 26/191 (13%)
Query: 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLA 915
+ HH+ SV QG E L +L V V + G AL+G SG+GK+TL+ +LA
Sbjct: 7 VEVHHLKKSV-------GQG--EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILA 57
Query: 916 GRKTGGYTEGDISISGYPKNQ-------ATFARVSGYCEQNDIHSPHVTVYESLLFSAWL 968
G G G++S+ G P +Q A+ G+ Q+ + P + E++ A L
Sbjct: 58 GLDDGS--SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALL 115
Query: 969 RLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSI 1028
R S S+ L+E L + LP LS +++R+ +A P +
Sbjct: 116 RGESSRQSRNG------AKALLEQLGLGKRLDHLPA--QLSGGEQQRVALARAFNGRPDV 167
Query: 1029 IFMDEPTSGLD 1039
+F DEPT LD
Sbjct: 168 LFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 52/218 (23%), Positives = 86/218 (39%), Gaps = 51/218 (23%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPKN 935
E + ++L+ V+ + G + A+MG +G+GK+TL + G Y TEG+I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDG---- 67
Query: 936 QATFARVSGYCEQNDIHSPHVTVYESL---LFSAW--------------LRLSSDIDSKT 978
DI ++ E +F A+ LR + +
Sbjct: 68 -------------EDI--LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGA 112
Query: 979 RKMF------VDEVMDLVELEP-LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFM 1031
R + + E +L+ L+ V +G S ++KR I L+ P + +
Sbjct: 113 RGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEKKRNEILQLLLLEPKLAIL 168
Query: 1032 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
DEP SGLD A IV + + GR V+ H +
Sbjct: 169 DEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 66/214 (30%), Positives = 95/214 (44%), Gaps = 35/214 (16%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG------YPKNQA 937
L D++ G L+G SG GKTT + ++AG + T G I I G PK+
Sbjct: 16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKD-- 71
Query: 938 TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSS--DIDSKTRKMFVDEVMDLVELEPL 995
R QN PH+TVY+++ F LR +ID + V EV +L+++E L
Sbjct: 72 ---RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDER-----VREVAELLQIEHL 123
Query: 996 TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNT 1053
+ LS QR+R+ + +V P + MDEP S LDA+ + MR R
Sbjct: 124 LDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK-LRVQMRAELKRLQ 177
Query: 1054 VDTGRTVVCTIHQPSIDIFEAF---DELLLMKRG 1084
G T + H D EA D + +M G
Sbjct: 178 QRLGTTTIYVTH----DQVEAMTMADRIAVMNDG 207
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 72/255 (28%), Positives = 101/255 (39%), Gaps = 52/255 (20%)
Query: 201 LLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ-RTCAYISQNDLHFGEM 259
LLGP G GKTTLL LAG D +G I G + P R + Q+ F M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDY 319
TV E + F + V AEI R EA
Sbjct: 58 TVEENVAFGLKMRKVPR-----AEIKPRVLEA---------------------------- 84
Query: 320 VLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQ 379
L+L+ L D+ +SGGQ++RV LV K+LL+DE + LD Q
Sbjct: 85 -LRLVQL-----EEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQ 138
Query: 380 ICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGF 439
+ +K + L IT + + EA + D I ++ +G+I G E++ E
Sbjct: 139 MQLELKTIQEQLGITFVF-VTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYE------- 190
Query: 440 KCPDRKGVADFLQEV 454
P VA F+ E+
Sbjct: 191 -EPANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-13
Identities = 57/210 (27%), Positives = 95/210 (45%), Gaps = 12/210 (5%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA 937
+ +L+D+S PG A++G SG+GK+TL+ +L T G+I I G
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGIDIRDI 396
Query: 938 TFA---RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
+ + G Q D T+ E++ +I+ + E + L
Sbjct: 397 SLDSLRKRIGIVSQ-DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEF--IANLPD 453
Query: 995 LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
+ +VG GV LS QR+RL IA L+ NP I+ +DE TS LD A++ ++ +
Sbjct: 454 GYDTIVGERGV-NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL 512
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
GRT + H+ S + D ++++ G
Sbjct: 513 K-GRTTLIIAHRLS--TIKNADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 4e-13
Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 29/211 (13%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA-------RVSGY 945
G+ TAL G SG+GKT+L++++AG EG I ++G A R GY
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRP--DEGRIELNGRVLVDAEKGIFLPPEKRRIGY 80
Query: 946 CEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGV 1005
Q+ PH TV +L + W K+ + D+++ L+ +E L + PG
Sbjct: 81 VFQDARLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGIEHL---LDRYPGT 128
Query: 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTVDTGRTVVCTI 1064
LS +++R+ I L+ P ++ MDEP + LD R I+ R + ++
Sbjct: 129 --LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVS 186
Query: 1065 HQPSID-IFEAFDELLLMKRGGQVIYAGPLG 1094
H S+D + D +++++ G+V +GPL
Sbjct: 187 H--SLDEVLRLADRVVVLEN-GKVKASGPLE 214
|
Length = 352 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 8e-13
Identities = 77/273 (28%), Positives = 119/273 (43%), Gaps = 53/273 (19%)
Query: 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF 240
+ D+S +K LLGP G GKTTLL +AG +G+I G + +
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITD- 71
Query: 241 VP--QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
VP +R + Q+ F MTV E + F + + AEI R +EA
Sbjct: 72 VPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKK----AEIKARVEEA------- 120
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVG 358
L+L+GL+ AD Q+ SGGQ++RV LV
Sbjct: 121 ----------------------LELVGLEGFADRKP-HQL----SGGQQQRVALARALVP 153
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418
KVLL+DE + LD+ Q+ K +K++ L IT + + EA + D I ++++
Sbjct: 154 EPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVY-VTHDQEEALAMSDRIAVMND 212
Query: 419 GQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
G+I G E++ ++ P + VADF+
Sbjct: 213 GRIEQVGTPEEI--------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 9e-13
Identities = 70/308 (22%), Positives = 115/308 (37%), Gaps = 70/308 (22%)
Query: 149 HIGSRAIPTLPNAVINIAENVL----------GSLRILPSKKRKIQILKDVSGLVKPSRM 198
+G I LP AE +L + ++ +++ + DVS ++
Sbjct: 260 RLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGET 319
Query: 199 TLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEF----KEFVPQRTCAYISQNDL 254
L+G G+GK+TL LAG L +G I + G + E R + D
Sbjct: 320 LGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP 376
Query: 255 HFG---EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQ 311
+ MTV + LAE R G
Sbjct: 377 YSSLNPRMTVGDI----------------LAEPLRIHGGGS-----------------GA 403
Query: 312 KTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTG 371
+ +L+L+GL D+ +SGGQ++RV L K+L++DE +
Sbjct: 404 ERRARVAELLELVGLP----PEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSA 459
Query: 372 LDSSTTFQICKYMKQMVHVLEITTI-VS-----LLQPAPEAYDLFDNIILLSEGQIVYQG 425
LD S Q+ +K + L +T + +S + A D + ++ +G+IV +G
Sbjct: 460 LDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA-------DRVAVMYDGRIVEEG 512
Query: 426 PREKVLEF 433
P EKV E
Sbjct: 513 PTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 61/257 (23%), Positives = 106/257 (41%), Gaps = 61/257 (23%)
Query: 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLT-GKIKYCGH 235
K+Q LK VS ++ ++GP G+GK+TLL L G LD + T G+++ G
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG-LD---RPTSGEVRVDGT 66
Query: 236 EFKEFVPQ-------RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRRE 288
+ + + R ++ Q+ ++T E + E+ ++
Sbjct: 67 DISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENV-------------ELPLLLAGVP 113
Query: 289 KEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV---SGG 345
K+ + +A L L+ +GL GD++ SGG
Sbjct: 114 KK---------ERRERAEEL------------LERVGL--------GDRLNHYPSELSGG 144
Query: 346 QKKRVTTGEMLVGPAKVLLMDEISTG-LDSSTTFQICKYMKQMVHVLEITTIVSLLQPAP 404
Q++RV L K++L DE TG LDS T ++ + ++++ T +V P
Sbjct: 145 QQQRVAIARALANDPKIILADE-PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD--P 201
Query: 405 EAYDLFDNIILLSEGQI 421
E + D II L +G+I
Sbjct: 202 ELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 61/249 (24%), Positives = 107/249 (42%), Gaps = 51/249 (20%)
Query: 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKL----DDDLKLTGKIKYCGHE 236
+ Q+L D++ + P + +L GP G+GKTTLL L G L + LK+ G+ Y E
Sbjct: 16 LRKQVLFDINLEINPGEIVILTGPSGSGKTTLL-TLIGGLRSVQEGSLKVLGQELYGASE 74
Query: 237 FKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
+ +R YI Q G +T R+ + + E+ +S +E
Sbjct: 75 KELVQLRRNIGYIFQAHNLLGFLTARQNVQMA---------LELQPNLSYQEARE----- 120
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR---RGVSGGQKKRVTTG 353
+A A +L+ +GL GD + +SGGQK+RV
Sbjct: 121 -------RARA------------MLEAVGL--------GDHLDYYPHNLSGGQKQRVAIA 153
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413
LV K++L DE + LDS + + + M+++ E + ++ D+ D I
Sbjct: 154 RALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR--EQGCTILIVTHDNRILDVADRI 211
Query: 414 ILLSEGQIV 422
+ + +G+++
Sbjct: 212 VHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 66/242 (27%), Positives = 105/242 (43%), Gaps = 50/242 (20%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAG--KLDDDLKLTGKIKYCGHEFKEFVP 242
L D++ + +LLGP G GKTT L +AG + G+I G + + P
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS-----GRIYIGGRDVTDLPP 69
Query: 243 -QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
R A + QN + MTV + + F + R+ P EID
Sbjct: 70 KDRDIAMVFQNYALYPHMTVYDNIAFGLK--------------LRKV------PKDEIDE 109
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
++ A +LL ++ + D+ + +SGGQ++RV G +V K
Sbjct: 110 RVREVA--------------ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREPK 150
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTI-VSLLQPAPEAYDLFDNIILLSEGQ 420
V LMDE + LD+ Q+ +K++ L TTI V+ Q EA + D I ++++GQ
Sbjct: 151 VFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ--VEAMTMADRIAVMNDGQ 208
Query: 421 IV 422
I
Sbjct: 209 IQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 1e-12
Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 26/227 (11%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYT-EGDISISGYPKNQATFA 940
Q L V G + AL+G SG+GK+TL+ L+G TG + I + G +
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--G 75
Query: 941 RVSGYCEQNDIHSPHV----------TVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV 990
R++ ++ ++ ++ +V E++L A L S +T +
Sbjct: 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA---LGSTPFWRTCFSWFTREQKQR 132
Query: 991 ELEPLTNAMVGLPG-----VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
L+ LT VG+ V LS Q++R+ IA L+ +I DEP + LD +A I
Sbjct: 133 ALQALTR--VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARI 190
Query: 1046 VMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
VM T+R+ G TVV T+HQ +D + E ++ R G V Y G
Sbjct: 191 VMDTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 16/188 (8%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG-----YPKNQAT 938
LRDVS G L G SGAGK+TL+ ++ G + T G I ++G +
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP--TRGKILVNGHDLSRLKGREIP 75
Query: 939 FARVS-GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTN 997
F R G Q+ P TVYE++ + + + R V EV+DLV L+
Sbjct: 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRR---VSEVLDLVGLKHKAR 132
Query: 998 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
A LP LS +++R+ IA +V P+++ DEPT LD + +MR G
Sbjct: 133 A---LP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLG 187
Query: 1058 RTVVCTIH 1065
TV+ H
Sbjct: 188 TTVLMATH 195
|
Length = 223 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-12
Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 23/221 (10%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP-KNQAT 938
++Q LR VS G + AL+G +GAGKTTL+ + G G I G
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPP 72
Query: 939 FARVS---GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV-ELEP 994
R Y + P +TV E+LL A+ R D +++ R + +EV +L L+
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYAR--RDKEAQERDL--EEVYELFPRLKE 128
Query: 995 LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
N G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 129 RRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 1055 DTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGQVIYAGP 1092
G + + Q + A D +++ G+++ +G
Sbjct: 184 KEGGMTILLVEQ---NARFALEIADRGYVLEN-GRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 16/193 (8%)
Query: 877 EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936
L +S G + G +G GKTTL+ +LAG G++ +G +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAE 66
Query: 937 AT--FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
R Y P ++ E+L F W + + +++ + V L
Sbjct: 67 QRDEPHRNILYLGHLPGLKPELSALENLHF--WAAIHGG-----AQRTIEDALAAVGLTG 119
Query: 995 LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
+ LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 120 FEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL 174
Query: 1055 DTGRTVVCTIHQP 1067
G V+ T HQ
Sbjct: 175 ARGGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 24/215 (11%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA 940
++L+ VS G + A++G SG+GK+TL+ +L G T G++ +G ++ +
Sbjct: 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSSN 75
Query: 941 RVS-------GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE 993
+ G+ Q P T E++ + S ++K R E+++ V LE
Sbjct: 76 ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAY---EMLEKVGLE 132
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTV 1050
+ + P LS +R+R+ IA LV PS++ DEPT LD A I+ M +
Sbjct: 133 ---HRINHRPS--ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085
++T VV H ++ + D +L MK G
Sbjct: 188 NRELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 2e-12
Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 15/196 (7%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP--KNQATFARVSGYCEQN 949
RPG L+GV+GAGKTT +L G T T GD +++G N + + GYC Q
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNISDVHQNMGYCPQF 2020
Query: 950 DIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009
D +T E L A LR + ++ + + + + L + + G S
Sbjct: 2021 DAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGT-----YS 2072
Query: 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
+++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H S+
Sbjct: 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH--SM 2130
Query: 1070 DIFEAF-DELLLMKRG 1084
+ EA L +M +G
Sbjct: 2131 EECEALCTRLAIMVKG 2146
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 19/196 (9%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR 941
+L D++ G + A++G SG+GK+TL++++ + + G + ++G +
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE--KFDSGQVYLNGQETPPLNSKK 69
Query: 942 VS-------GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKM-FVDEVMDLVELE 993
S GY QN + TV E+L L L SK K E ++ V L
Sbjct: 70 ASKFRREKLGYLFQNFALIENETVEENLD----LGLKYKKLSKKEKREKKKEALEKVGLN 125
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
+ LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 126 LKLKQKI-----YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLEL 180
Query: 1054 VDTGRTVVCTIHQPSI 1069
D G+T++ H P +
Sbjct: 181 NDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-12
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 908 TTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS----GYCEQNDIHSPHVTVYESLL 963
+TL+ ++ G T G I + G + ++ G Q+ P +TV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 964 FSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELV 1023
F K +E ++ V L + V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 1024 ANPSIIFMDEPTS 1036
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 28/170 (16%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT----GGYTEGDISISGYPKNQATF 939
L D+S PG L ++G +GAGKTT+MDV+ G KT G G ++G P++Q
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITG-KTRPDEGSVLFGGTDLTGLPEHQ--I 74
Query: 940 ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDID-----------SKTRKMFVDEVMD 988
AR +G + P TV+E+L L L+ D S K ++EV++
Sbjct: 75 AR-AGIGRK--FQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLE 129
Query: 989 LVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
+ L + + GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 130 TIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 24/215 (11%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YTEGDISISGYPKNQATF 939
L++VS G ++G +G+GK+ L++ +AG + G G I+ P +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGK-DITNLPPEK--- 70
Query: 940 ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVEL---EPLT 996
R Y QN PH+TVY+++ + R + + + + + E++ + L +P T
Sbjct: 71 -RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET 129
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
LS +++R+ IA LV NP I+ +DEP S LD R + ++
Sbjct: 130 -----------LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKE 178
Query: 1057 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
V + + + D++ +M G++I G
Sbjct: 179 FGVTVLHVTHDFEEAWALADKVAIM-LNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 74/252 (29%), Positives = 103/252 (40%), Gaps = 55/252 (21%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP- 242
L VS +K LLGP G GKTTLL +AG +G+I G + P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70
Query: 243 QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAY 302
+R + QN F +TV E + F R + AEI R EA
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA----------- 114
Query: 303 MKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKV 362
L L+ L+ A+ Q+ SGGQ++RV LV KV
Sbjct: 115 ------------------LDLVQLEGYANRKP-SQL----SGGQQQRVAIARALVNEPKV 151
Query: 363 LLMDEISTGLDSSTTFQICKYM----KQMVHVLEITTI-VSLLQPAPEAYDLFDNIILLS 417
LL+DE LD ++ K M K++ L IT + V+ Q EA + D I +++
Sbjct: 152 LLLDEPLGALD----LKLRKDMQLELKRLQKELGITFVFVTHDQ--EEALTMSDRIAVMN 205
Query: 418 EGQIVYQG-PRE 428
+G+I G P E
Sbjct: 206 KGKIQQIGTPEE 217
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 4e-12
Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 44/255 (17%)
Query: 862 NYSVDMPAEMKAQGI----------EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLM 911
N S + P +K G+ +E ++ ++D+S G + +G +GAGK+T +
Sbjct: 8 NLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTL 67
Query: 912 DVLAGRKTGGYTEGDISISGY-P-KNQATFARVSGYCEQNDIHSPHVTVYESLLFSAW-- 967
+L G T G + ++G P + + + R G + L W
Sbjct: 68 KMLTGLLLP--TSGKVRVNGKDPFRRREEYLRSIGLV---------MGQKLQLW---WDL 113
Query: 968 --------LRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIA 1019
L+L +I +D + ++++LE V LS QR R +A
Sbjct: 114 PALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELA 168
Query: 1020 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDEL 1078
L+ P ++F+DEPT GLD A A + ++ + TV+ T H DI D +
Sbjct: 169 AALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRV 227
Query: 1079 LLMKRGGQVIYAGPL 1093
LL+ + GQ+++ G L
Sbjct: 228 LLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 5e-12
Identities = 70/242 (28%), Positives = 104/242 (42%), Gaps = 44/242 (18%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN--QATFAR 941
L D+S R G + ALMG +GAGK+TL+ +L+G G I I G T A
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEMRFASTTAAL 77
Query: 942 VSG----YCEQNDIH-SPHVTVYESLLFSAWL-RLSSDIDSKTRKMFVDEVMDL-----V 990
+G Y E +H P +TV E+L +L +L R++ E + V
Sbjct: 78 AAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHLGV 130
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
+++P T + LS QR+ + IA L N +I DEPTS L AR + R +
Sbjct: 131 DIDPDTP-------LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI 183
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGV 1110
R GR ++ H+ +IF D + + K G + V F+ + V
Sbjct: 184 RELRAEGRVILYVSHRME-EIFALCDAITVFKDG--------------RYVATFDDMAQV 228
Query: 1111 PR 1112
R
Sbjct: 229 DR 230
|
Length = 501 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 5e-12
Identities = 59/246 (23%), Positives = 103/246 (41%), Gaps = 71/246 (28%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
LKD++ V + ++GP G+GK++LL AL G+L+ KL+G + G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG---------- 66
Query: 245 TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMK 304
+ AY+SQ T+RE + F G ++ R ++ I A
Sbjct: 67 SIAYVSQEPWIQN-GTIRENILF-------GKPFD-----EERYEKV-------IKA--- 103
Query: 305 ATALAGQKTSLATDYVLKLLGLDICAD---TMVGDQMRRGV--SGGQKKRVTTGEMLVGP 359
+L D L+I D T +G+ +G+ SGGQK+R++ +
Sbjct: 104 --------CALEPD-------LEILPDGDLTEIGE---KGINLSGGQKQRISLARAVYSD 145
Query: 360 AKVLLMDEISTGLDSSTT---FQ--ICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNII 414
A + L+D+ + +D+ F+ I + + +T + LL A D I+
Sbjct: 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHA-------DQIV 198
Query: 415 LLSEGQ 420
+L G+
Sbjct: 199 VLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 7e-12
Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 35/223 (15%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPKNQ---AT 938
L +VS RPG A++G G+GK+TL+ +L G Y TEG + + G Q A
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL----YQPTEGSVLLDGVDIRQIDPAD 536
Query: 939 FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNA 998
R GY Q D + T+ +++ A + D +E++ EL +T
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA--PYADD----------EEILRAAELAGVTEF 583
Query: 999 MVGLP-GVD--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
+ P G+D LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 584 VRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR 643
Query: 1050 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
++ + G+T+V H+ S + + D +++M G+++ GP
Sbjct: 644 LKRWL-AGKTLVLVTHRTS--LLDLVDRIIVM-DNGRIVADGP 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 7e-12
Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 18/221 (8%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YTEGDISISGYPKN 935
++ L DVS + G L+G SG+GK+TL + G + T G +G + +
Sbjct: 17 SVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRL 76
Query: 936 QATFARVSGYCEQNDIHS--PHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE 993
+ + Q+ + S P +T+ E + + + RK V ++ V L
Sbjct: 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLP 135
Query: 994 P--LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
L P LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 136 EEVLNR----YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLK 189
Query: 1052 N-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
+ G T++ H + A D + +M G+++ G
Sbjct: 190 KLQEELGLTLLFITHDLGVVAKIA-DRVAVMY-AGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 7e-12
Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 37/227 (16%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG----YPKNQ 936
++L+ +S G + ++G SG+GK+TL+ L G + G I++ G K+
Sbjct: 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDI 72
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEV----MDLVEL 992
R G Q PH+TV E++ + K +K+ E ++L+E
Sbjct: 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLA--PV-------KVKKLSKAEAREKALELLE- 122
Query: 993 EPLTNAMVGLPGV-----DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
VGL LS Q++R+ IA L +P ++ DEPTS LD V+
Sbjct: 123 ------KVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVL 176
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIF--EAFDELLLMKRGGQVIYAGP 1092
+++ + G T++ H+ F E D ++ M G++I GP
Sbjct: 177 DVMKDLAEEGMTMIIVTHEMG---FAREVADRVIFM-DQGKIIEEGP 219
|
Length = 240 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 58/259 (22%), Positives = 107/259 (41%), Gaps = 45/259 (17%)
Query: 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP 242
+ + DVS V+P + L+GP GAGKTTL + G +G + + G + P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 243 QRTCAY-IS---QNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
R I+ Q F +TV E + + +R +
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENV--------------AVGAHARLGLSGLLGRPRA 119
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVG 358
+A A + +L+ +GL AD G+ +S GQ++R+ L
Sbjct: 120 RKEEREARERARE--------LLEFVGLGELADRPAGN-----LSYGQQRRLEIARALAT 166
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV-----SLLQPAPEAYDLFDNI 413
K+LL+DE + GL+ T ++ + ++++ +T ++ L+ L D I
Sbjct: 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV------MGLADRI 220
Query: 414 ILLSEGQIVYQGPREKVLE 432
++L+ G+++ +G E+V
Sbjct: 221 VVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 1e-11
Identities = 51/200 (25%), Positives = 94/200 (47%), Gaps = 16/200 (8%)
Query: 872 KAQGIEED--RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTE-GD 926
+A+ + + + +++ VS + G + L+G +GAGKTT ++ G + G
Sbjct: 2 RAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDG 61
Query: 927 ISISGYPKNQATFARVS-GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDE 985
I+ P ++ AR+ GY Q +TV E++L A L + K R+ ++E
Sbjct: 62 QDITKLPMHKR--ARLGIGYLPQEASIFRKLTVEENIL--AVLEIRGL-SKKEREEKLEE 116
Query: 986 VMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
+++ + L + LS +R+R+ IA L NP + +DEP +G+D A
Sbjct: 117 LLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171
Query: 1046 VMRTVRNTVDTGRTVVCTIH 1065
+ + ++ D G V+ T H
Sbjct: 172 IQKIIKILKDRGIGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 1e-11
Identities = 71/268 (26%), Positives = 111/268 (41%), Gaps = 74/268 (27%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
+L DVS ++P + +LGP GAGK+TLL AL+G+L D +G+++ G ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72
Query: 244 ---RTCAYISQ-NDLHFGEMTVRETMDFSGRCLGVGTRYEM-LAEISRREKEAGIKPDPE 298
R A + Q + L F TV E + M A E D
Sbjct: 73 ELARRRAVLPQHSSLSFP-FTVEEVV-------------AMGRAPHGLSRAED----DAL 114
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLV- 357
+ A + LA LA +L SGG+++RV +L
Sbjct: 115 VAAALAQVDLAH----LAGRDYPQL-------------------SGGEQQRVQLARVLAQ 151
Query: 358 -----GPAKVLLMDEISTGLDSS---TTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDL 409
GP + LL+DE ++ LD + ++ +Q+ H + IV L +DL
Sbjct: 152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLA---RQLAHERGLAVIVVL-------HDL 201
Query: 410 ------FDNIILLSEGQIVYQGPREKVL 431
D I+LL +G++V G +VL
Sbjct: 202 NLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-11
Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA 937
D ++L +++ +PG ++G SG+GK+TL +L T G + + G A
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGVDLAIA 524
Query: 938 ---TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
R G V + E++LFS +R +I + V+ +L
Sbjct: 525 DPAWLRRQMG-----------VVLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAKLAG 571
Query: 995 LTNAMVGLP-GVD--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
+ + LP G + LS QR+R+ IA LV NP I+ DE TS LD + A+
Sbjct: 572 AHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEAL 631
Query: 1046 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
+MR +R + GRTV+ H+ + A D ++++++G
Sbjct: 632 IMRNMR-EICRGRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 17/175 (9%)
Query: 872 KAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG 931
G + L +VS G ++G SG+GK+TL +LAG + + G I + G
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDG 68
Query: 932 YP----KNQATFARVSGYCEQNDIHS--PHVTVYESLLFSAWLRLSSDIDSKTRKMFVDE 985
P K F R Q+ S P TV L S + + E
Sbjct: 69 KPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR-----IAE 123
Query: 986 VMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
++D V L P + + P LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 124 LLDQVGLPP--SFLDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 1e-11
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 16/192 (8%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP-----KN 935
+L+ + + G + ++G SG+GK+TL+ + + G I I G KN
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKN 70
Query: 936 QATFARVSGYCEQNDIHSPHVTVYESLLFS-AWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
+ G Q PH+TV E++ + ++ S +++ R + E+++ V L
Sbjct: 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL---ELLEKVGLAD 127
Query: 995 LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
+A P LS Q++R+ IA L NP ++ DEPTS LD V+ +++
Sbjct: 128 KADAY---PA--QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA 182
Query: 1055 DTGRTVVCTIHQ 1066
+ G T+V H+
Sbjct: 183 EEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 2e-11
Identities = 62/256 (24%), Positives = 103/256 (40%), Gaps = 54/256 (21%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
+LK V V+ + ++GP G+GK+TLL + G L D +G++ G +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEA 70
Query: 244 ------RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
R + Q+ F +TV E + F R E +
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLR-------------------EHTRLSEE 111
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLV 357
EI + +K L+ +GL D + +SGG KKRV L
Sbjct: 112 EIRE------IVLEK--------LEAVGLRGAEDLYPAE-----LSGGMKKRVALARALA 152
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV---SLLQPAPEAYDLFDNII 414
++LL DE + GLD + I ++ + L +T+I+ L A+ + D I
Sbjct: 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL----DTAFAIADRIA 208
Query: 415 LLSEGQIVYQGPREKV 430
+L +G+IV +G E++
Sbjct: 209 VLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-11
Identities = 50/194 (25%), Positives = 75/194 (38%), Gaps = 41/194 (21%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP--- 242
L+ VS V P L+GP GAGK+TLL L G +D G I G +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 243 QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAY 302
+ A++ Q+ F T+ E I +A D EI
Sbjct: 395 RDQIAWVPQHPFLF-AGTIAE-------------------NIRLARPDA---SDAEIREA 431
Query: 303 MKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKV 362
++ L + L + DT +G+ G+SGGQ +R+ + A +
Sbjct: 432 LERAGLDE---------FVAALPQGL--DTPIGEG-GAGLSGGQAQRLALARAFLRDAPL 479
Query: 363 LLMDEISTGLDSST 376
LL+DE + LD+ T
Sbjct: 480 LLLDEPTAHLDAET 493
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 53/251 (21%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV 241
+I L +VS ++ ++G G+GK+TLL LAG +G + G + ++
Sbjct: 16 EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLD 72
Query: 242 PQ---RTCAYISQN-DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
P R Y+ Q+ L +G T+R+ + LG P
Sbjct: 73 PADLRRNIGYVPQDVTLFYG--TLRDNI-----TLG----------------------AP 103
Query: 298 EID--AYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGVSGGQKKRVTTGE 354
D ++A LAG TD+V K GLD +G++ RG+SGGQ++ V
Sbjct: 104 LADDERILRAAELAG-----VTDFVNKHPNGLD----LQIGER-GRGLSGGQRQAVALAR 153
Query: 355 MLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNII 414
L+ +LL+DE ++ +D ++ ++ + ++Q++ + T I+ +P+ DL D II
Sbjct: 154 ALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPS--LLDLVDRII 209
Query: 415 LLSEGQIVYQG 425
++ G+IV G
Sbjct: 210 VMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-11
Identities = 61/267 (22%), Positives = 110/267 (41%), Gaps = 49/267 (18%)
Query: 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLT-GKIKYCG- 234
+ ++ ++DVS V+P + ++G G+GK+TL +AL G L + ++T G++ G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 235 -------HEFKEFVPQRTCAYISQNDL-HFGE-MTVRETMDFSGRCLGVGTRYEMLAEIS 285
E ++ +R A I Q+ + MT+ + + + R G G+R E
Sbjct: 76 DLLGLSEREMRKLRGKRI-AMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAV 134
Query: 286 RREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGG 345
++ G+ D Y +SGG
Sbjct: 135 ELLEQVGLPDPERRDRY------------------------------------PHQLSGG 158
Query: 346 QKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPE 405
++RV L K+L+ DE +T LD +T QI +K + L + +
Sbjct: 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVV 218
Query: 406 AYDLFDNIILLSEGQIVYQGPREKVLE 432
A L D ++++ +G+IV GP E++L
Sbjct: 219 AE-LADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 62/265 (23%), Positives = 118/265 (44%), Gaps = 63/265 (23%)
Query: 180 KRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKE 239
+L+D+S + L+GP G+GK+TL+ + D D +G+I GH+ ++
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRD 68
Query: 240 FVPQ---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
+ R +SQ+ F + TV E + + +P
Sbjct: 69 YTLASLRRQIGLVSQDVFLFND-TVAENIAYG-------------------------RPG 102
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGV--SGGQKKRVTTG 353
+ +A A A +++++L G DT++G+ RGV SGGQ++R+
Sbjct: 103 ATREEVEEAARAAN-----AHEFIMELPEGY----DTVIGE---RGVKLSGGQRQRIAIA 150
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQ-MVHVLEITTIV-----SLLQPAPEAY 407
L+ +L++DE ++ LD+ + + +++ M + TT V S ++ A
Sbjct: 151 RALLKDPPILILDEATSALDTESERLVQAALERLMKNR---TTFVIAHRLSTIENA---- 203
Query: 408 DLFDNIILLSEGQIVYQGPREKVLE 432
D I++L +G+IV +G E++L
Sbjct: 204 ---DRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 877 EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936
D +LRD+S G AL+G SG+GK+TL++++ + G I I G+
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRD 68
Query: 937 ATFA---RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE 993
T A R G Q D+ + TV E++ + +++ R E + EL
Sbjct: 69 YTLASLRRQIGLVSQ-DVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIM--ELP 125
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
+ ++G GV LS QR+R+ IA L+ +P I+ +DE TS LD + +V +
Sbjct: 126 EGYDTVIGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERL 184
Query: 1054 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
+ RT H+ S I A D +++++ G+++ G
Sbjct: 185 MK-NRTTFVIAHRLST-IENA-DRIVVLED-GKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 3e-11
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 178 SKK-RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHE 236
SK+ K L D+S V+ + LLGP GAGKTTL+ + G L D +G+IK G +
Sbjct: 7 SKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKD 63
Query: 237 FKEFVPQ--RTCAYISQNDLHFGEMTVRETMDFSG 269
K+ + R Y+ + + +TVRE + SG
Sbjct: 64 IKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSG 98
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 62/244 (25%), Positives = 99/244 (40%), Gaps = 49/244 (20%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGH----EFKEFV 241
++ VS V+ + LLGP GAGKTT + L L +G+ GH E +E
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREV- 71
Query: 242 PQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
+R + Q+ E+T E + R GV RRE+
Sbjct: 72 -RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-------ERRER------------ 111
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
D +L +GL AD +V + SGG ++R+ LV +
Sbjct: 112 ---------------IDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPE 151
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421
VL +DE + GLD T + +Y++++ TI+ EA L D + ++ G+I
Sbjct: 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYMEEAEQLCDRVAIIDHGRI 210
Query: 422 VYQG 425
+ +G
Sbjct: 211 IAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 3e-11
Identities = 64/248 (25%), Positives = 112/248 (45%), Gaps = 41/248 (16%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
IL ++S +KP + ++G G+GK+TL KL +VP+
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRF---------------YVPEN 56
Query: 245 TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMK 304
+ +DL + + R +GV + +L S R+ A P ++ ++
Sbjct: 57 GRVLVDGHDLALADPA------WLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIE 110
Query: 305 ATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVL 363
A LAG A D++ +L G D T+VG+Q G+SGGQ++R+ L+ ++L
Sbjct: 111 AAKLAG-----AHDFISELPEGYD----TIVGEQ-GAGLSGGQRQRIAIARALIHNPRIL 160
Query: 364 LMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVY 423
+ DE ++ LD + I + M + + I L A D II++ +G+IV
Sbjct: 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNA----DRIIVMEKGRIVE 216
Query: 424 QGPREKVL 431
QG +++L
Sbjct: 217 QGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 3e-11
Identities = 57/257 (22%), Positives = 101/257 (39%), Gaps = 51/257 (19%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
IL V V + +LG G+GK+TLL + G L D G+I G + + +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEE 78
Query: 244 ------RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
+ + Q F +TV E + F R E P+
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR-------------------EHTKLPES 119
Query: 298 EID--AYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEM 355
I MK L+L+GL D +SGG +KRV
Sbjct: 120 LIRELVLMK----------------LELVGL----RGAAADLYPSELSGGMRKRVALARA 159
Query: 356 LVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415
+ ++L +DE ++GLD + I + ++++ L +T I+ + + D + +
Sbjct: 160 IALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIM-VTHDLDSLLTIADRVAV 218
Query: 416 LSEGQIVYQGPREKVLE 432
L++G+++ +G E++L
Sbjct: 219 LADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-11
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 31/181 (17%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
LL +VS PG L+G +GAGK+TL+ +LAG G+++ PK RV
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTR---PKG----LRV 68
Query: 943 SGYCEQNDIHSPHVTVYESLL--FSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM- 999
GY Q P TV + ++ F L ++++ + + L ELE L +
Sbjct: 69 -GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 1000 --------------VGLPGVDG----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
+G P D LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 128 GWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLE 187
Query: 1042 A 1042
+
Sbjct: 188 S 188
|
Length = 530 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 67/218 (30%), Positives = 104/218 (47%), Gaps = 37/218 (16%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L D++ G L ++G SG GKTTL++++AG Y G I++ G P R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 944 GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLP 1003
G QN+ P V +++ F L+L+ ++ R +++ VGL
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQLAG-VEKMQRLEIAHQML----------KKVGLE 119
Query: 1004 GVDG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV-- 1054
G + LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ +
Sbjct: 120 GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQ 176
Query: 1055 DTGRTVVCTIHQPSIDIFEAF---DELLLMKRG-GQVI 1088
+TG+ V+ H DI EA EL+L+ G G+V+
Sbjct: 177 ETGKQVLLITH----DIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-11
Identities = 53/202 (26%), Positives = 80/202 (39%), Gaps = 22/202 (10%)
Query: 870 EMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDI 927
E E D L +S G + G +G+GKTTL+ +LAG G +
Sbjct: 2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRV 57
Query: 928 SISGYPKNQA--TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDE 985
++G P + + AR Y ++V E+L F W SD V+E
Sbjct: 58 LLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRF--WHADHSDEQ-------VEE 108
Query: 986 VMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
+ V L + V LS Q++R+ +A L++ + +DEPT+ LD A
Sbjct: 109 ALARVGLNGFEDRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVAR 163
Query: 1046 VMRTVRNTVDTGRTVVCTIHQP 1067
+ G VV T HQ
Sbjct: 164 FAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 4e-11
Identities = 67/242 (27%), Positives = 113/242 (46%), Gaps = 25/242 (10%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYTEGDISISGYPKNQA- 937
Q + DV+ F G A++G +G+GK+TL+ + TG T DI+I+ K++
Sbjct: 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80
Query: 938 -TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMD-----LVE 991
+ G Q ES LF + K KM +DEV + L++
Sbjct: 81 RPVRKRIGMVFQ---------FPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMD 131
Query: 992 LEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
L + M P +S Q +++ I L NP II +DEPT+GLD ++ VMR ++
Sbjct: 132 LGFSRDVMSQSPF--QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLK 189
Query: 1052 N-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP--LGRQSQKLVEYFEAVP 1108
+ D +T++ H + ++ DE+++MK G V P L + +KL ++ +P
Sbjct: 190 SLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIGLP 248
Query: 1109 GV 1110
+
Sbjct: 249 EI 250
|
Length = 286 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 39/230 (16%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
RDVS PG + ++G SG+GKTTL++ L+ R G++ +S
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDGQLRDLYALS 79
Query: 944 ------------GYCEQN--DIHSPHVT----VYESLLFSAWLRLSSDIDSKTRKMFVDE 985
G+ Q+ D V+ + E L+ R DI + +
Sbjct: 80 EAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGA-RHYGDIRATAG-----D 133
Query: 986 VMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
++ VE++ + LP S ++RL IA LV +P ++FMDEPT GLD A
Sbjct: 134 WLERVEIDA--ARIDDLPTT--FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQAR 189
Query: 1046 VMRTVRNTV-DTGRTVVCTIHQPSIDIFEA---FDELLLMKRGGQVIYAG 1091
++ +R V + G VV H D+ A LL+MK+ G+V+ +G
Sbjct: 190 LLDLLRGLVRELGLAVVIVTH----DLAVARLLAHRLLVMKQ-GRVVESG 234
|
Length = 258 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 5e-11
Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 20/221 (9%)
Query: 877 EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPK 934
+ R+ +RDVS PG + ++G SG+GK+TL L G + G T G++ + G
Sbjct: 18 DGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDL 77
Query: 935 NQAT-------FARVSGYCEQNDIHS--PHVTVYESLLFSAWLRLSSDIDSKTRKMFVDE 985
+ + Q+ + S P V + A LRL + E
Sbjct: 78 LGLSEREMRKLRGKRIAMIFQDPMTSLNP-VMTIGDQIREA-LRLHGKGSRAEARKRAVE 135
Query: 986 VMDLVELE-PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
+++ V L P P LS R+R+ IA+ L P ++ DEPT+ LD A
Sbjct: 136 LLEQVGLPDPERRDR--YPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQA 191
Query: 1045 IVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
++ +++ + G V+ H + + E D +++M +G
Sbjct: 192 QILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 5e-11
Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 47/255 (18%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGH---EFK 238
K +LKD+S ++P ++GP G+GK+TL+ L D +G+I G +
Sbjct: 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDIS 397
Query: 239 EFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
++ +SQ+ L F T+RE + G EI K A
Sbjct: 398 LDSLRKRIGIVSQDPLLFSG-TIRENIAL-------GRPDATDEEIEEALKLANAH---- 445
Query: 299 IDAYMKATALAGQKTSLATDYVLKLL-GLDICADTMVGDQMRRGVSGGQKKRVTTGEMLV 357
+++ L G DT+VG + +SGGQ++R+ L+
Sbjct: 446 -------------------EFIANLPDGY----DTIVG-ERGVNLSGGQRQRLAIARALL 481
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417
+L++DE ++ LD+ T I +K+++ TT++ + + D II+L
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLS--TIKNADRIIVLD 537
Query: 418 EGQIVYQGPREKVLE 432
G+IV +G E++L
Sbjct: 538 NGRIVERGTHEELLA 552
|
Length = 567 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-11
Identities = 76/274 (27%), Positives = 114/274 (41%), Gaps = 56/274 (20%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
LKD+S VK LLGP G GKTTLL +AG + + G I G + PQ
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL---ERQTAGTIYQGGRDITRLPPQ 74
Query: 244 -RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAY 302
R + Q+ F +TV + + + G+ R AE++ R
Sbjct: 75 KRDYGIVFQSYALFPNLTVADNIAY-----GLKNRGMGRAEVAER--------------- 114
Query: 303 MKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKV 362
+L L+GL G Q+ SGGQ++RV L +
Sbjct: 115 --------------VAELLDLVGLPGSERKYPG-QL----SGGQQQRVALARALATSPGL 155
Query: 363 LLMDEISTGLDSSTTFQICKYMKQMVHVLEITTI-VSLLQPAPEAYDLFDNIILLSEGQI 421
LL+DE + LD+ + ++Q+ L +TTI V+ Q EA + D I++++ G I
Sbjct: 156 LLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ--EEALSMADRIVVMNHGVI 213
Query: 422 VYQG-PREKVLEFFEYMGFKCPDRKGVADFLQEV 454
G P+E ++ P VADF+ EV
Sbjct: 214 EQVGTPQEI---------YRHPATPFVADFVGEV 238
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 7e-11
Identities = 61/257 (23%), Positives = 103/257 (40%), Gaps = 62/257 (24%)
Query: 178 SKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLT-GKIKYCGHE 236
K++ LKDV+ ++ ++GP G+GK+TLL L G LD K T G++ G +
Sbjct: 13 LGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLL-NLLGGLD---KPTSGEVLINGKD 68
Query: 237 FKEFVPQ-------RTCAYISQN-DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRRE 288
+ + + ++ QN +L ++TV E + E+ I
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQNFNL-LPDLTVLENV-------------ELPLLI---- 110
Query: 289 KEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKK 348
AG A + + G + L +L SGGQ++
Sbjct: 111 --AGKSAGRRKRAAEELLEVLGLEDRLLKKKPSEL-------------------SGGQQQ 149
Query: 349 RVTTGEMLVGPAKVLLMDEISTG-LDSSTTFQICKYMKQMVHVLEITTIVSLLQPA---P 404
RV L+ K++L DE TG LDS T ++ + ++++ T I+ P
Sbjct: 150 RVAIARALINNPKIILADEP-TGNLDSKTAKEVLELLRELNKERGKTIIM-----VTHDP 203
Query: 405 EAYDLFDNIILLSEGQI 421
E D +I L +G+I
Sbjct: 204 ELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 7e-11
Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 35/177 (19%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA-- 940
+L +VS G + A++G SG+GK+TL+ +L G T T GD+ +G P ++ + A
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 941 -----RVSGYCEQNDIHSPHVTVYES----LLFSAWLRLSSDIDSKTRKMFVDEVMDLVE 991
+ G+ Q P T E+ LL ++I+S+ +M
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKP--AEINSRALEML--------- 130
Query: 992 LEPLTNAMVGLPG-----VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
A VGL LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 131 ------AAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 7e-11
Identities = 74/274 (27%), Positives = 123/274 (44%), Gaps = 52/274 (18%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF-VP 242
Q+L D+S + +M LLGP G+GKTTLL +AG L+ + +G I++ G +
Sbjct: 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEH--QTSGHIRFHGTDVSRLHAR 72
Query: 243 QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAY 302
R ++ Q+ F MTV + + F L + RRE+ I A
Sbjct: 73 DRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRERPNA----AAIKA- 115
Query: 303 MKATALAG--QKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA 360
K T L Q LA Y +L SGGQK+RV L
Sbjct: 116 -KVTQLLEMVQLAHLADRYPAQL-------------------SGGQKQRVALARALAVEP 155
Query: 361 KVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420
++LL+DE LD+ ++ ++++Q+ L+ T+ V + EA ++ D ++++S+G
Sbjct: 156 QILLLDEPFGALDAQVRKELRRWLRQLHEELKFTS-VFVTHDQEEAMEVADRVVVMSQGN 214
Query: 421 IVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEV 454
I G ++V ++ P + V +F+ EV
Sbjct: 215 IEQAGTPDQV--------WREPATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 48/193 (24%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
+ +S + +L GP G+GKTTLL +AG L G IK G + +
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDDPDVAE 73
Query: 245 TCAYIS-QNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYM 303
C Y+ +N + +TV E ++F LG + +I A +
Sbjct: 74 ACHYLGHRNAMK-PALTVAENLEFWAAFLG--------------------GEELDIAAAL 112
Query: 304 KATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVL 363
+A LA + +S GQK+RV +LV +
Sbjct: 113 EAVGLAP-----------------------LAHLPFGYLSAGQKRRVALARLLVSNRPIW 149
Query: 364 LMDEISTGLDSST 376
++DE + LD++
Sbjct: 150 ILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 62/255 (24%), Positives = 106/255 (41%), Gaps = 45/255 (17%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAG--KLDDDLKLTGKIKYCGHEFKE 239
LKD+S + +T L+GP G GK+TLL L L G++ G +
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKD--- 68
Query: 240 FVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
I D+ E+ R M F G+ Y+ ++ + GIK E+
Sbjct: 69 ---------IYDLDVDVLELRRRVGMVFQKPNPFPGSIYD---NVAYGLRLHGIKLKEEL 116
Query: 300 DAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR-RGVSGGQKKRVTTGEMLVG 358
D ++ L+ L V D++ G+SGGQ++R+ L
Sbjct: 117 DERVEE--------------ALRKAALW----DEVKDRLHALGLSGGQQQRLCLARALAN 158
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV---SLLQPAPEAYDLFDNIIL 415
+VLL+DE ++ LD +T +I + + ++ E T ++ ++ Q A + D
Sbjct: 159 EPEVLLLDEPTSALDPISTAKIEELIAELKK--EYTIVIVTHNMQQ----AARVADRTAF 212
Query: 416 LSEGQIVYQGPREKV 430
L G++V GP E++
Sbjct: 213 LLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 32/212 (15%)
Query: 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR--VSGYCEQ 948
F G +TA++G SG+GK+TL++++AG +T G + I+G A A VS ++
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVTAAPPADRPVSMLFQE 78
Query: 949 NDIHSPHVTVYES--LLFSAWLRLSSD----IDSKTRKMFVDEVMDLVELEPLTNAMVGL 1002
N++ H+TV ++ L S L+L+++ I+ ++ + + L
Sbjct: 79 NNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGL------------EKRL 125
Query: 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGRT 1059
PG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T T
Sbjct: 126 PGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKMT 181
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
V+ HQP D ++ + G++ G
Sbjct: 182 VLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-10
Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 24/212 (11%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG-----YPKNQA 937
L DVS G + ++G SGAGK+TL+ ++ + T G + + G + +
Sbjct: 21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEAEL 78
Query: 938 TFARVS-GYCEQ--NDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
R G Q N + S TV+E++ F L L+ + K V E+++LV L
Sbjct: 79 RQLRQKIGMIFQHFNLLSSR--TVFENVAFP--LELAG-VPKAEIKQRVAELLELVGLSD 133
Query: 995 LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNT 1053
+ P LS Q++R+ IA L NP I+ DE TS LD +I+
Sbjct: 134 KADRY---PA--QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDIN 188
Query: 1054 VDTGRTVVCTIHQPSIDIFEAF-DELLLMKRG 1084
+ G T+V H+ +++ + D + ++ +G
Sbjct: 189 RELGLTIVLITHE--MEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 26/211 (12%)
Query: 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR--VSGYCEQ 948
G + A++G SGAGK+TL++++AG +T G+I I+G + A VS ++
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQE 79
Query: 949 NDIHSPHVTVYESLLF--SAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD 1006
N++ + H+TV +++ S L+L+++ K V+ V L + LPG
Sbjct: 80 NNLFA-HLTVAQNIGLGLSPGLKLNAEQREK-----VEAAAAQVGLA---GFLKRLPGE- 129
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRTVVC 1062
LS QR+R+ +A LV I+ +DEP S LD RA M + + + + T++
Sbjct: 130 -LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTLLM 185
Query: 1063 TIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093
H P D D ++ + G++ G
Sbjct: 186 VTHHPE-DAARIADRVVFLDN-GRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-10
Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 51/202 (25%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPKNQATFAR 941
DVS + G + AL+G +GAGK+TLM +L G Y G+I + G
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL----YQPDSGEIRVDGKEVR------ 69
Query: 942 VSGYCEQNDIHSPH-------------------VTVYESLLFSAWLRLSSDID-SKTRKM 981
I SP +TV E+++ ID + R
Sbjct: 70 ---------IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR 120
Query: 982 FVDEVMDL--VELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+ E+ + + ++P +A V LS +++R+ I L ++ +DEPT+ L
Sbjct: 121 -IKELSERYGLPVDP--DAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLT 172
Query: 1040 ARAAAIVMRTVRNTVDTGRTVV 1061
+ A + +R G+T++
Sbjct: 173 PQEADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 2e-10
Identities = 60/227 (26%), Positives = 91/227 (40%), Gaps = 49/227 (21%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---AT 938
LL DVS RPG + A++G +GAGK+TL+ L+G + G++ ++G P A
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLADWSPAE 73
Query: 939 FARVSGYCEQNDIHSPHVTVYESLLFS-------AWLRLSSDIDSKTRKMFVDEVMDLVE 991
AR Q HS SL F A R + V + V+
Sbjct: 74 LARRRAVLPQ---HS-------SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVD 123
Query: 992 LEPLTN----AMVGLPGVDGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDAR 1041
L L LS +++R+ +A L P + +DEPTS LD
Sbjct: 124 LAHLAGRDYPQ---------LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLA 174
Query: 1042 AAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRG 1084
V+R R + G V+ +H D+ A D ++L+ +G
Sbjct: 175 HQHHVLRLARQLAHERGLAVIVVLH----DLNLAARYADRIVLLHQG 217
|
Length = 258 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 51/190 (26%), Positives = 76/190 (40%), Gaps = 23/190 (12%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
+L++VS + P L+G GAGK+TLL LAG+L+ D +G++
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKGL-------- 66
Query: 245 TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMK 304
Y+SQ E TV + + G G E+LAE+ D +
Sbjct: 67 RVGYLSQEPPLDPEKTVLDYV-----IEGFGELRELLAELEEAYALLADPDDELLAELEA 121
Query: 305 ATA-LAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVL 363
L G + L LG D V +SGG ++RV L+ +L
Sbjct: 122 LLEELDGWTLEARAEEALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDLL 175
Query: 364 LMDEISTGLD 373
L+DE + LD
Sbjct: 176 LLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-10
Identities = 56/173 (32%), Positives = 83/173 (47%), Gaps = 29/173 (16%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YTEG-DISISGYP 933
L+D+S + G L+G SG GKTTL+ ++AG R+T G Y G DI+
Sbjct: 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT----- 69
Query: 934 KNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE 993
R G Q+ P++TV +++ + K R M EV + V E
Sbjct: 70 -RLPPQKRDYGIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVA-E 117
Query: 994 PLTNAMVGLPGVDG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
L +VGLPG + LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 118 LL--DLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 20/222 (9%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP----- 933
D L+ ++ + G +TA++G +GAGK+TL L G + G I G P
Sbjct: 17 DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPIDYSR 74
Query: 934 KNQATFARVSGYCEQNDIHSP-HVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVEL 992
K G Q+ + +VY+ + F A + L D ++ VD + +
Sbjct: 75 KGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGA-VNLKLPEDEVRKR--VDNALKRTGI 131
Query: 993 EPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
E L + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 132 EHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVE 186
Query: 1053 TV-DTGRTVVCTIHQPSIDIFEAF-DELLLMKRGGQVIYAGP 1092
+ G T++ H IDI + D + +MK G ++ P
Sbjct: 187 MQKELGLTIIIATH--DIDIVPLYCDNVFVMKEGRVILQGNP 226
|
Length = 283 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-10
Identities = 59/288 (20%), Positives = 110/288 (38%), Gaps = 58/288 (20%)
Query: 875 GIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYTEGDISISG 931
+ ++ + VS + G + ++G SG+GK+ L + G + G+I G
Sbjct: 12 PTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDG 71
Query: 932 ---YPKNQATFARVSG----YCEQNDIHS--PHVTV----YESLLFSAWLRLSSDIDSKT 978
++ ++ G Q+ + S P +T+ E L +
Sbjct: 72 KDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLR--------LHGKGLS 123
Query: 979 RKMFVDEVMDLVELEPLTNAMVGLPGVDG--------LSTEQRKRLTIAVELVANPSIIF 1030
+K + ++L+E +VG+P + LS R+R+ IA+ L NP ++
Sbjct: 124 KKEAKERAIELLE-------LVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI 176
Query: 1031 MDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089
DEPT+ LD A ++ ++ + G ++ H + + E D + +M Y
Sbjct: 177 ADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVM-------Y 228
Query: 1090 AGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNV 1137
AG ++VE N +P T L S P +L
Sbjct: 229 AG-------RIVEEGPVEEI---FKNPKHPYTRGLLNSLPRLGERLPP 266
|
Length = 316 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 30/219 (13%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYTEGDISIS 930
+ +L+DVS G A++G SG+GK+T++ DV +G I
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS----ILIDGQDIR 66
Query: 931 GYPKNQATFARVSGYCEQ-----NDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDE 985
+ R G Q ND T+ ++ + ++ + + +
Sbjct: 67 EV--TLDSLRRAIGVVPQDTVLFND------TIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 986 VMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
++ + +VG G+ LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 119 K--IMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTERE 175
Query: 1046 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
+ +R V GRT + H+ S I A D+++++K G
Sbjct: 176 IQAALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 20/202 (9%)
Query: 898 ALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP---KNQATFARVSGYCEQN---DI 951
A++G +GAGK+TL G T G + I G P +N + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 952 HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE 1011
SP TV + + F ++ +D +T V + ++ LE L + +P LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDR---VP--HHLSGG 141
Query: 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1070
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL- 200
Query: 1071 IFEAFDELLLMKRGGQVIYAGP 1092
+ E D + +M +G V Y
Sbjct: 201 VPEMADYIYVMDKGRIVAYGTV 222
|
Length = 277 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 27/223 (12%)
Query: 885 RDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-TEGDISISGYPKNQATFARVS 943
RDVS PG + ++G SG+GK+TL+ LAGR + T I SG +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 944 ---------GYCEQNDIHSPHVTVYE-----SLLFSAWLRLSSDIDSKTRKMFVDEVMDL 989
G+ QN + V L + R +I + + + +D
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDP 139
Query: 990 VELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
++ L A G G+ ++RL IA LV P ++FMDEPT GLD A ++
Sbjct: 140 TRIDDLPRAFSG-----GM----QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDL 190
Query: 1050 VRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
+R V D G V+ H + A LL+M++ G+V+ +G
Sbjct: 191 LRGLVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQ-GRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 64/261 (24%), Positives = 113/261 (43%), Gaps = 43/261 (16%)
Query: 872 KAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYTE-GDIS 928
K +E+ + L +S G ++G +GAGK+TL++ +AG T G +
Sbjct: 13 KGTPLEK---RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVD 69
Query: 929 ISGYPKNQ-ATF-ARV-----SGYCEQNDIHSPHVTVYESLLFSAWLR-----LSSDIDS 976
++ + A ARV +G P +T+ E+L A R LSS ++
Sbjct: 70 VTKKSVAKRANLLARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALNE 121
Query: 977 KTRKMFVDEVMDLVE-LEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035
+ R F + + L LE + +GL LS QR+ L++ + + P I+ +DE T
Sbjct: 122 RRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHT 176
Query: 1036 SGLDARAAAIVMR-TVRNTVDTGRTVVCTIH--QPSIDIFEAFDELLLMKRGGQVI--YA 1090
+ LD + A VM T + + T + H + ++D + L+M G+++
Sbjct: 177 AALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALD----YGNRLIMLHSGKIVLDVT 232
Query: 1091 GPLGRQSQ--KLVEYFEAVPG 1109
G L++ FE + G
Sbjct: 233 GEEKASLTVLDLIQMFEKIRG 253
|
Length = 263 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 24/194 (12%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPKNQ--- 936
+L+ +S PG AL+G SG GK+T++ +L R Y T G+I + G
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE-RF---YDPTSGEILLDGVDIRDLNL 72
Query: 937 ATFARVSGYCEQNDIHSPHV---TVYESLLFSAWLRLSSDIDSKTRKMFVDE-VMDLVEL 992
G Q P + T+ E++ + +++ +K + + +M L
Sbjct: 73 RWLRSQIGLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL--- 125
Query: 993 EPLT-NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
P + +VG G LS Q++R+ IA L+ NP I+ +DE TS LDA + +V +
Sbjct: 126 -PDGYDTLVGERGSQ-LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL- 182
Query: 1052 NTVDTGRTVVCTIH 1065
+ GRT + H
Sbjct: 183 DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-10
Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 29/218 (13%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATFA 940
LR +S + G A++G SG+GK+TL ++ G T G + + G Q TF
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDRETFG 391
Query: 941 RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
+ GY Q D+ TV E++ R + D +++++ +L + ++
Sbjct: 392 KHIGYLPQ-DVELFPGTVAENIA-----RFGENADP-------EKIIEAAKLAGVHELIL 438
Query: 1001 GLP-------GVDG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
LP G G LS QR+R+ +A L +P ++ +DEP S LD + ++
Sbjct: 439 RLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498
Query: 1052 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089
G TVV H+PS + D++L+++ G +
Sbjct: 499 ALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-10
Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 28/227 (12%)
Query: 877 EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP--- 933
+ + L++ + G A++G SG+GK+TL+ +LAG +G I+++G
Sbjct: 347 PGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIAS 404
Query: 934 -KNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVEL 992
QA +S ++ + S T+ ++L + +SD + + + V L
Sbjct: 405 LDEQALRETISVLTQRVHLFSG--TLRDNLRLAN--PDASDEE-------LWAALQQVGL 453
Query: 993 EPL-------TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
E L N +G G LS +R+RL +A L+ + + +DEPT GLD
Sbjct: 454 EKLLESAPDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQ 512
Query: 1046 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
V+ + + G+T++ H+ E D ++++ G +
Sbjct: 513 VLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGTH 556
|
Length = 573 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 3e-10
Identities = 66/253 (26%), Positives = 101/253 (39%), Gaps = 57/253 (22%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
IL+ VS V +T +LG G GKTTLL L G L +G I+ G + + P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70
Query: 244 ----RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
AY+ Q F +TV E L G LA + RR + K EI
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEEN-------LLTG-----LAALPRRSR----KIPDEI 114
Query: 300 DAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM--RRG--VSGGQKKRVTTGEM 355
VLK +M RRG +SGGQ++++
Sbjct: 115 YELFP---------------VLK--------------EMLGRRGGDLSGGQQQQLAIARA 145
Query: 356 LVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415
LV K+LL+DE + G+ S I + ++++ + ++ Q A +L D +
Sbjct: 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLV-EQYLDFARELADRYYV 204
Query: 416 LSEGQIVYQGPRE 428
+ G++V G +
Sbjct: 205 MERGRVVASGAGD 217
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-10
Identities = 68/275 (24%), Positives = 108/275 (39%), Gaps = 48/275 (17%)
Query: 867 MPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGD 926
++ +E +L V R G L L+G +GAGKTTL+ + G T T G
Sbjct: 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGT 59
Query: 927 ISISGYPKNQATFA----RVSGYCEQNDI-------------HSPHVTVYESLLFSAWLR 969
+ ++G + RV+ + + +PH + R
Sbjct: 60 VLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS-----------R 108
Query: 970 LSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSII 1029
+ ++ V+ M+ P V LS +R+R+ +A L ++
Sbjct: 109 FDTWTETDRAA--VERAMERTG----VAQFADRP-VTSLSGGERQRVLLARALAQATPVL 161
Query: 1030 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELLLMKRGGQVI 1088
+DEPT+ LD + VR VD G+T V IH +D+ + DEL+L+ G V
Sbjct: 162 LLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIH--DLDLAARYCDELVLLADGR-VR 218
Query: 1089 YAGPLGR--QSQKLVEYFEAVPGVPRITNGYNPAT 1121
AGP + L F+A V G +PAT
Sbjct: 219 AAGPPADVLTADTLRAAFDARTAV-----GTDPAT 248
|
Length = 402 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-10
Identities = 62/232 (26%), Positives = 100/232 (43%), Gaps = 54/232 (23%)
Query: 201 LLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ---RTCAYISQNDLHFG 257
L+GP GAGKT+LL AL G L G +K G E +E P+ + +++ QN
Sbjct: 381 LVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLP- 435
Query: 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLAT 317
T+R+ + LG PD + +A A +
Sbjct: 436 HGTLRDNV-----LLG--------------------NPDASDEQLQQALENAW-----VS 465
Query: 318 DYVLKL-LGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSST 376
+++ L GLD T +GDQ G+S GQ +R+ L+ P ++LL+DE + LD+ +
Sbjct: 466 EFLPLLPQGLD----TPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520
Query: 377 TFQICKYMKQMVH---VLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQG 425
+ + + L +T + L +D I ++ +GQIV QG
Sbjct: 521 EQLVMQALNAASRRQTTLMVTHQLEDLAQ-------WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 4e-10
Identities = 67/224 (29%), Positives = 100/224 (44%), Gaps = 34/224 (15%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG--YPKNQAT 938
+ L+ V+ PG + AL+G +GAGK+TLM VL+G T+G I+I+ Y K
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINYNKLDHK 75
Query: 939 FARVSG----YCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
A G Y E + I +TV E+L L T+K+ ++D E+
Sbjct: 76 LAAQLGIGIIYQELSVID--ELTVLENLYIGRHL---------TKKVCGVNIIDWREMRV 124
Query: 995 LTNAM---VGL-----PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA-- 1044
M VGL V LS ++ L IA L+ + +I MDEPTS L +
Sbjct: 125 RAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYL 184
Query: 1045 -IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087
++M +R G +V H+ + +I D +MK G V
Sbjct: 185 FLIMNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDGSSV 224
|
Length = 510 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 58/191 (30%), Positives = 87/191 (45%), Gaps = 26/191 (13%)
Query: 892 RPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYTEGDISI-SGYPKNQA-----TFARV 942
+PG + A++G SG+GKTTL +++L + G GDI+I + +Q +
Sbjct: 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQH 86
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGL 1002
G+ QN PH TV E+++ + + +E E L A VGL
Sbjct: 87 VGFVFQNFNLFPHRTVLENIIEGPVI---------VKGEPKEEATARAR-ELL--AKVGL 134
Query: 1003 PGVDG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
G + LS Q++R+ IA L P +I DEPTS LD V+ T+R
Sbjct: 135 AGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEK 194
Query: 1058 RTVVCTIHQPS 1068
RT+V H+ S
Sbjct: 195 RTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 4e-10
Identities = 54/240 (22%), Positives = 93/240 (38%), Gaps = 38/240 (15%)
Query: 877 EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG-YPKN 935
+E+ L L ++S F + ++G SG+GK+TL+ G Y G I + Y +
Sbjct: 35 QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGD 92
Query: 936 QATFARVSGYCEQNDIHS--------------PHV-----TVYESLLFSAWLRLSSDIDS 976
+ + I + P T+ + ++F ++
Sbjct: 93 KKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEA 152
Query: 977 KTRKMFVDEVMDL----VELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1032
K F M L +E P GLS Q++R+ IA L P I+ D
Sbjct: 153 KKLAKFYLNKMGLDDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFD 201
Query: 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
EPT+GLD + +M+ + + +TV H + E DE+++M +G + P
Sbjct: 202 EPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTP 260
|
Length = 320 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 5e-10
Identities = 65/258 (25%), Positives = 106/258 (41%), Gaps = 53/258 (20%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
++L VS ++P + +LGP GAGK+TLL AL+G+L D +G++ G + P+
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 244 ---RTCAYISQN-DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
R A + QN L F TV+E + G E I
Sbjct: 72 ELARHRAVLPQNSSLAF-PFTVQEVVQMGRIPHRSGREPEEDERI--------------A 116
Query: 300 DAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML--- 356
+ AT L+G LA L SGG+++RV +L
Sbjct: 117 AQALAATDLSG----LAGRDYRTL-------------------SGGEQQRVQLARVLAQL 153
Query: 357 ---VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413
V + L +DE ++ LD + + +Q+ E ++++L A D I
Sbjct: 154 WPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRI 211
Query: 414 ILLSEGQIVYQGPREKVL 431
+LL +G+++ G + VL
Sbjct: 212 VLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-10
Identities = 63/261 (24%), Positives = 118/261 (45%), Gaps = 56/261 (21%)
Query: 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF 240
R L +S +++P L+G G+GK+TL+ + + D +G+I GH+ ++
Sbjct: 343 RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADY 399
Query: 241 VPQ---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
R A +SQ+ + F + T+ + Y + R E E +
Sbjct: 400 TLASLRRQVALVSQDVVLFND-TIANNI-----------AYGRTEQADRAEIERALA--- 444
Query: 298 EIDAYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
AY A D+V KL LGL DT +G+ +SGGQ++R+ L
Sbjct: 445 --AAY-------------AQDFVDKLPLGL----DTPIGENGVL-LSGGQRQRLAIARAL 484
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV-----SLLQPAPEAYDLFD 411
+ A +L++DE ++ LD+ + + +++++ TT+V S ++ A D
Sbjct: 485 LKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTIEKA-------D 535
Query: 412 NIILLSEGQIVYQGPREKVLE 432
I+++ +G+IV +G ++L
Sbjct: 536 RIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 5e-10
Identities = 62/241 (25%), Positives = 100/241 (41%), Gaps = 29/241 (12%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP------ 933
R +L +VS G L+G SG GK+TL +L G + +G +S G
Sbjct: 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLYQLDR 80
Query: 934 KNQATFARVSGYCEQNDIHS--PHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVE 991
K + F R Q+ + P +TV + + LR + +D +K + E++D+V
Sbjct: 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVG 138
Query: 992 LEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
L LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 139 LRS--EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
Query: 1052 NTVDTGRTVVCTIHQPSIDIFEAF-DELLLMKRGGQVI----------YAGPLGRQSQKL 1100
T I + + ++F + +M GQ++ + P GR Q
Sbjct: 195 KLQQAFGTAYLFITH-DLRLVQSFCQRVAVMD-KGQIVEECDVAQLLSFKHPAGRNLQSA 252
Query: 1101 V 1101
V
Sbjct: 253 V 253
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 5e-10
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 26/217 (11%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATFA 940
L +SG R G + L+G +GAGK+TL+ +AG +G G I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELA 71
Query: 941 RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVEL-EPLTNAM 999
R Y Q +P W L+ KTR +++V + L + L +
Sbjct: 72 RHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRST 123
Query: 1000 VGLPGVDGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTV 1054
L G QR RL + + ANP+ ++ +DEP + LD + + R +
Sbjct: 124 NQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
G +V + H + + A L+KR G+++ +G
Sbjct: 180 QQGLAIVMSSHDLNHTLRHA-HRAWLLKR-GKLLASG 214
|
Length = 248 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 6e-10
Identities = 47/203 (23%), Positives = 76/203 (37%), Gaps = 48/203 (23%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKE---- 239
++LK ++ + + LLG GAGK+TLL+ L G L +G + G
Sbjct: 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKG 62
Query: 240 -FVPQRTCAYISQN-DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
++ + Q+ D V + + F LG+ AE+ RR +EA
Sbjct: 63 LLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA------ 111
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLV 357
L +G ++ +SGG+KKRV +
Sbjct: 112 -----------------------LTAVGASGLR-----ERPTHCLSGGEKKRVAIAGAVA 143
Query: 358 GPAKVLLMDEISTGLDSSTTFQI 380
VLL+DE + GLD + Q+
Sbjct: 144 MRPDVLLLDEPTAGLDPAGREQM 166
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 7e-10
Identities = 57/287 (19%), Positives = 108/287 (37%), Gaps = 77/287 (26%)
Query: 173 LRI-LPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDL--KLTGK 229
L + P+ ++ + VS +K + ++G G+GK+ L A+ G L + G+
Sbjct: 7 LSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE 66
Query: 230 IKYCGHEFKEFVPQRTC-------AYISQ------NDLHFGEMTVRETMDFSGRCLGVGT 276
I + G + + A I Q N + MT+ + +
Sbjct: 67 ILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPV----MTIGDQI----------- 111
Query: 277 RYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD 336
E+L + + +A +A L L+L+G+ D
Sbjct: 112 -AEVLRLHGKGLSKK--------EAKERAIEL------------LELVGIP--------D 142
Query: 337 QMRRG------VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHV 390
RR +SGG ++RV L K+L+ DE +T LD + QI +K++
Sbjct: 143 PERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE 202
Query: 391 LEITTI-----VSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLE 432
I + + ++ D + ++ G+IV +GP E++ +
Sbjct: 203 KGTALILITHDLGV------VAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 7e-10
Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 62/260 (23%)
Query: 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHE 236
PS+ + ILK +S + P + L+G G GK+T+ ++L + D +G+I G +
Sbjct: 11 PSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTV-VSLLERFYD--PTSGEILLDGVD 66
Query: 237 FKEFVPQ---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGI 293
++ + +SQ + F + T+ E + +
Sbjct: 67 IRDLNLRWLRSQIGLVSQEPVLF-DGTIAENIRYG------------------------- 100
Query: 294 KPDPEIDAYMKATALAGQKTSLATDYVLKLL-GLDICADTMVGDQMRRGV--SGGQKKRV 350
KPD + +A A D+++ L G D T+VG+ RG SGGQK+R+
Sbjct: 101 KPDATDEEVEEAAKKAN-----IHDFIMSLPDGYD----TLVGE---RGSQLSGGQKQRI 148
Query: 351 TTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV-----SLLQPAPE 405
L+ K+LL+DE ++ LD+ + + + + + + TTIV S ++ A
Sbjct: 149 AIARALLRNPKILLLDEATSALDAESEKLVQEALDRA--MKGRTTIVIAHRLSTIRNA-- 204
Query: 406 AYDLFDNIILLSEGQIVYQG 425
D I +L GQ+V QG
Sbjct: 205 -----DLIAVLQNGQVVEQG 219
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 8e-10
Identities = 47/144 (32%), Positives = 67/144 (46%), Gaps = 11/144 (7%)
Query: 899 LMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP-KNQATFARVSGYCEQNDIHSPHVT 957
L+G SG GKTTL+ +LAG + G I + G N R Q+ PH+T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMT 58
Query: 958 VYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLT 1017
V E++ F +R + K V E + LV+LE LS Q++R+
Sbjct: 59 VEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEF-----ADRKPHQLSGGQQQRVA 110
Query: 1018 IAVELVANPSIIFMDEPTSGLDAR 1041
+A LV P I+ +DEP S LD +
Sbjct: 111 LARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 8e-10
Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 52/225 (23%)
Query: 877 EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPK 934
E++ L+D++ G L A++G G+GK++L+ L G K G +S+ G
Sbjct: 14 EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK----LSGSVSVPG--- 66
Query: 935 NQATFARVSGYCEQ-----NDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDL 989
+ A Y Q N T+ E++LF D + ++V+
Sbjct: 67 ---SIA----YVSQEPWIQNG------TIRENILF------GKPFD----EERYEKVIKA 103
Query: 990 VELEP---------LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
LEP LT +G G+ LS Q++R+++A + ++ I +D+P S +DA
Sbjct: 104 CALEPDLEILPDGDLT--EIGEKGI-NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160
Query: 1041 R-AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
I + + +T + HQ + + D+++++ G
Sbjct: 161 HVGRHIFENCILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 8e-10
Identities = 55/263 (20%), Positives = 99/263 (37%), Gaps = 60/263 (22%)
Query: 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHE 236
P+ ++ L DVS +K L+G G+GK+TL A+ G L +G I + G +
Sbjct: 12 PTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKD 68
Query: 237 FKEFVPQ------RTCAYISQN---DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRR 287
+ + + + Q+ L+ MT+ E + R G ++ E E
Sbjct: 69 LLKLSRRLRKIRRKEIQMVFQDPMSSLNPR-MTIGEQIAEPLRIHGKLSKKEARKEA-VL 126
Query: 288 EKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQK 347
G+ E V ++ +SGGQ+
Sbjct: 127 LLLVGVGLPEE-----------------------------------VLNRYPHELSGGQR 151
Query: 348 KRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTI-----VSLLQP 402
+RV L K+L+ DE ++ LD S QI +K++ L +T + + +
Sbjct: 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV--- 208
Query: 403 APEAYDLFDNIILLSEGQIVYQG 425
+ D + ++ G+IV +G
Sbjct: 209 ---VAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 9e-10
Identities = 67/251 (26%), Positives = 101/251 (40%), Gaps = 45/251 (17%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCG---HEFKEFV 241
I+ V P +T LLGP G+GK+TLL LAG L D G + G H
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRA 72
Query: 242 PQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
R A + Q+ +TVR+ + L I R AG D DA
Sbjct: 73 RARRVALVEQDSDTAVPLTVRDVV--------------ALGRIPHRSLWAG---DSPHDA 115
Query: 302 YMKATALAG-QKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA 360
+ ALA + + LA + L SGG+++RV L
Sbjct: 116 AVVDRALARTELSHLADRDMSTL-------------------SGGERQRVHVARALAQEP 156
Query: 361 KVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420
K+LL+DE + LD + ++++ T+V+ L A D++++L G+
Sbjct: 157 KLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALHDLNLAASYCDHVVVLDGGR 214
Query: 421 IVYQGPREKVL 431
+V GP +VL
Sbjct: 215 VVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 58.5 bits (143), Expect = 1e-09
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
+LKDVS +KP ++GP G+GK+TLL L D +G+I G + ++ +
Sbjct: 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLE 72
Query: 244 ---RTCAYISQNDLHFGEMTVRE 263
+ AY+ Q+ F T+RE
Sbjct: 73 SLRKNIAYVPQDPFLF-SGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 66/242 (27%), Positives = 97/242 (40%), Gaps = 56/242 (23%)
Query: 138 RYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSR 197
R E I+ + S A ++P ++ +A ++ G + S K ++ +S V
Sbjct: 13 RLELSPIERKHQGISEAKASIPGSMSTVAIDLAG---VSKSYGDKA-VVNGLSFTVASGE 68
Query: 198 MTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRT------CAYISQ 251
LLGP GAGK+T+ + G D GKI G VP R + Q
Sbjct: 69 CFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLG----VPVPARARLARARIGVVPQ 121
Query: 252 NDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQ 311
D E TVRE + GR G+ TR E EA I
Sbjct: 122 FDNLDLEFTVRENLLVFGRYFGMSTR----------EIEAVIPS---------------- 155
Query: 312 KTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTG 371
+L+ L+ AD V D +SGG K+R+T L+ ++L++DE +TG
Sbjct: 156 --------LLEFARLESKADARVSD-----LSGGMKRRLTLARALINDPQLLILDEPTTG 202
Query: 372 LD 373
LD
Sbjct: 203 LD 204
|
Length = 340 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 44/250 (17%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-- 242
+ DV+ ++ +L+GP G+GKTT L + ++ +G+I G + + P
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVE 72
Query: 243 -QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
+R Y+ Q F +TV E + + LG I +R E
Sbjct: 73 LRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK-----ERIKKRADE----------- 116
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
+L L+GLD + D+ +SGGQ++RV L
Sbjct: 117 ------------------LLDLVGLD---PSEYADRYPHELSGGQQQRVGVARALAADPP 155
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421
+LLMDE LD T Q+ + +K++ TIV + EA L D I ++ G+I
Sbjct: 156 ILLMDEPFGALDPITRKQLQEEIKEL-QKELGKTIVFVTHDIDEALKLADRIAVMDAGEI 214
Query: 422 VYQGPREKVL 431
V +++L
Sbjct: 215 VQYDTPDEIL 224
|
Length = 309 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-09
Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATFARVSGYCEQ 948
G AL+G SGAGKT+L++ L G Y +G + I+G + ++ + + Q
Sbjct: 374 PAGQRIALVGPSGAGKTSLLNALLGFLP--Y-QGSLKINGIELRELDPESWRKHLSWVGQ 430
Query: 949 NDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD-- 1006
N PH T+ +++L + +V E + L+ G+D
Sbjct: 431 NP-QLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQ-----------GLDTP 478
Query: 1007 ------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+ + N +T
Sbjct: 479 IGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL-NAASRRQTT 537
Query: 1061 VCTIHQPSIDIFEAFDELLLMKRG 1084
+ HQ ++ +D++ +M+ G
Sbjct: 538 LMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 1e-09
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 17/186 (9%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG--YPKNQATFA 940
LL+ +S G L L G +GAGKTTL+ ++AG +G+I K+ T+
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSIKKDLCTYQ 73
Query: 941 RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
+ + +P++T+ E+ L+ DI + + E+ L LE L +
Sbjct: 74 KQLCFVGHRSGINPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYPC 125
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G V
Sbjct: 126 GL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180
Query: 1061 VCTIHQ 1066
+ T HQ
Sbjct: 181 LLTSHQ 186
|
Length = 200 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-09
Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 53/232 (22%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPKNQATFA 940
L+ + S +PG AL+G SG+GK+T+ ++AG Y G+I G P+ +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL----YQPWSGEILFDGIPREEIPRE 549
Query: 941 RVSG---YCEQNDIHSPHVTVYE-------SLLFSAWLRLSSDIDSKTRKMFVDEVMDLV 990
++ +Q DI TV + ++ + +R D D +
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNLTLWDPTIPDADLVRACKD------AAIHDVIT--- 599
Query: 991 ELEPLTNAMVGLPGVDG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
+ G G D LS QR+RL IA LV NPSI+ +DE TS LD
Sbjct: 600 -------SRPG--GYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650
Query: 1043 AAIVMRTVRNTVDTGRTVVCTI--HQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
I+ +R R C I H+ S I + DE+++++R G+V+ G
Sbjct: 651 EKIIDDNLRR-----RGCTCIIVAHRLST-IRDC-DEIIVLER-GKVVQRGT 694
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 1e-09
Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 21/219 (9%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ----- 936
+L+ ++ F +T L+G +G GK+TL L+G +G + G P +
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLDYSKRGL 72
Query: 937 -ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLR-LSSDIDSKTRKMFVDEVMDLVELEP 994
A +V+ + + + + + FS LR L TR+ VDE + LV+ +
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFS--LRNLGVPEAEITRR--VDEALTLVDAQH 128
Query: 995 LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
+ + LS Q+KR+ IA LV + +DEPT+GLD ++ +R V
Sbjct: 129 FRHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIV 183
Query: 1055 DTGRTVVCTIHQPSID-IFEAFDELLLMKRGGQVIYAGP 1092
G V+ + H ID I+E D + ++++G + + P
Sbjct: 184 AQGNHVIISSH--DIDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKNQATFAR 941
+ ++S + L+G +GAGK+TL+ ++ G R T G+I G+P + +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 942 VSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001
+ E ++ ++T E+L L D +R +DEV+++V+L
Sbjct: 72 IGSLIESPPLYE-NLTARENLKVHTTLLGLPD----SR---IDEVLNIVDLTNTGKKKAK 123
Query: 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
S ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 124 -----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 62/201 (30%), Positives = 92/201 (45%), Gaps = 32/201 (15%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP----- 933
D + L+ ++ G + AL+G +GAGK+TL G T G++ I G P
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIKYDK 70
Query: 934 KNQATFARVSGYCEQN---DIHSPHVTVYESLLFSAW-LRLSSDIDSKTRKMFVDEVMDL 989
K+ + G QN + +P TV E + F L LS + EV
Sbjct: 71 KSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKE-----------EVEKR 117
Query: 990 VELEPLTNAMVGLPGVDG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
V+ E L VG+ G + LS Q+KR+ IA L P II +DEPTSGLD A+
Sbjct: 118 VK-EAL--KAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
Query: 1045 IVMRTVRNTVDTGRTVVCTIH 1065
+M+ + + G T++ + H
Sbjct: 175 QIMKLLYDLNKEGITIIISTH 195
|
Length = 275 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 24/194 (12%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTE-GDISISGYPKNQAT 938
+++ DVS G + L+G +GAGKTT ++ G R G D I+ P ++
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR- 76
Query: 939 FARVS-GYCEQNDIHSPHV----TVYESLLFSAWLRLSSDIDSKT--RKMFVDEVMDLVE 991
AR+ GY Q + TV ++++ A L + D K RK +D +++
Sbjct: 77 -ARLGIGYLPQ----EASIFRKLTVEDNIM--AVLEIREK-DLKKAERKEELDALLEEFH 128
Query: 992 LEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
+ L ++ LS +R+R+ IA L ANP I +DEP +G+D A + R ++
Sbjct: 129 ITHLRDS----KAY-SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK 183
Query: 1052 NTVDTGRTVVCTIH 1065
+ D G V+ T H
Sbjct: 184 HLKDRGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-09
Identities = 68/254 (26%), Positives = 106/254 (41%), Gaps = 59/254 (23%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP- 242
+++ ++ + LLGP G GKTT+L +AG D +G+I G +
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE 84
Query: 243 QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAY 302
R + Q+ F MTV E + F R AEI+ R EA
Sbjct: 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPA-----AEITPRVMEA----------- 128
Query: 303 MKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR--GVSGGQKKRVTTGEMLVGPA 360
L+++ L+ A R+ +SGGQ++RV +V
Sbjct: 129 ------------------LRMVQLEEFAQ-------RKPHQLSGGQQQRVAIARAVVNKP 163
Query: 361 KVLLMDEISTGLDSSTTFQICKYM----KQMVHVLEITTI-VSLLQPAPEAYDLFDNIIL 415
KVLL+DE + LD +++ K M K + L IT + V+ Q EA + D I++
Sbjct: 164 KVLLLDESLSALD----YKLRKQMQNELKALQRKLGITFVFVTHDQ--EEALTMSDRIVV 217
Query: 416 LSEGQIVYQG-PRE 428
+ +G+I G PRE
Sbjct: 218 MRDGRIEQDGTPRE 231
|
Length = 375 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSL 399
RG+S Q+KR+T G L +L +DE ++GLDS + I +++K++ + + ++
Sbjct: 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQ-AILCTI 165
Query: 400 LQPAPEAYDLFDNIILLSE-GQIVYQG 425
QP+ ++ FD ++LL G+ VY G
Sbjct: 166 HQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV 241
L +VS +K + L+GP G+GK+TLL A+AG L +G+I G + +
Sbjct: 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLP 67
Query: 242 PQ---RTCAYISQ 251
+ R Y+ Q
Sbjct: 68 LEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQP 402
SGGQ++RV L+ +LL+DE ++GLD ++ ++ + ++++ T I+ P
Sbjct: 82 SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-AEEGRTVIIVTHDP 140
Query: 403 APEAYDLFDNIILLSEGQ 420
A D +I+L +G+
Sbjct: 141 -ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 57/264 (21%), Positives = 114/264 (43%), Gaps = 57/264 (21%)
Query: 178 SKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCG--- 234
S K +LKD++ +KP ++GP GAGKTTL+ L D G+I G
Sbjct: 11 SYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDI 67
Query: 235 HEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIK 294
+ + + Q+ F T+ E + + E+
Sbjct: 68 RDISRKSLRSMIGVVLQDTFLF-SGTIMENIRLGR-------------PNATDEEV---- 109
Query: 295 PDPEIDAYMKATALAGQKTSLATDYVLKLL-GLDICADTMVGDQMRRGVSGGQKKRVTTG 353
++A AG A D+++KL G DT++G+ +S G+++ +
Sbjct: 110 --------IEAAKEAG-----AHDFIMKLPNGY----DTVLGEN-GGNLSQGERQLLAIA 151
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV-----SLLQPAPEAYD 408
++ K+L++DE ++ +D+ T I + +++++ T+I+ S ++ A
Sbjct: 152 RAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIKNA----- 204
Query: 409 LFDNIILLSEGQIVYQGPREKVLE 432
D I++L +G+I+ +G +++L
Sbjct: 205 --DKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 59/251 (23%), Positives = 111/251 (44%), Gaps = 45/251 (17%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ- 243
IL D+S + ++T L+GP G GK+TLL A L +G + +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL---TPQSGTVFLGDKPISMLSSRQ 73
Query: 244 --RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEML-AEISRREKEAGIKPDPEID 300
R A + Q+ L +TVRE + + GR + + L +S + ++
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAY-GR-----SPWLSLWGRLSAEDNAR-------VN 120
Query: 301 AYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA 360
M+ T ++ AD + D +SGGQ++R +L
Sbjct: 121 QAMEQT------------------RINHLADRRLTD-----LSGGQRQRAFLAMVLAQDT 157
Query: 361 KVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420
V+L+DE +T LD + ++ + M+++ + T+V++L +A D++++L+ G
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMRELNT--QGKTVVTVLHDLNQASRYCDHLVVLANGH 215
Query: 421 IVYQGPREKVL 431
++ QG E+V+
Sbjct: 216 VMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 25/178 (14%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYTEGDISISGYP 933
Q +++V+ + G + AL+G SG GKTT + D+ G R TG I G
Sbjct: 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77
Query: 934 KNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE 993
+ R G Q P ++V+++++ A L+L+ D D +M++ E
Sbjct: 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDR-------DHLMEVAERS 128
Query: 994 PLTNAM-------VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
A+ + P GLS Q++RL IA L P I+ MDEPTS LD + A
Sbjct: 129 LRGAALWDEVKDRLKTPAT-GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185
|
Length = 252 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP------ 933
+L +VS + G AL+G SG GK+TL +L G ++ ++G++S G P
Sbjct: 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLAKLNR 81
Query: 934 KNQATFARVSGYCEQNDIHS--PHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVE 991
+ F R Q+ I + P TV E + LR +D R E++ V+
Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVD 139
Query: 992 LEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
L+ + + P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 140 LDD--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 24/164 (14%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---TEGDISISGYPKNQATFA 940
L +VS + G + +G +GAGK+T M ++ G Y G + + G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 941 --RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDI---DSKTRKMFVDEVMDLVELEPL 995
R GY + H+P +Y + +L+ + I + K V+E+++LV L P
Sbjct: 73 VQRNIGYLPE---HNP---LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE 126
Query: 996 TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 62/253 (24%), Positives = 108/253 (42%), Gaps = 38/253 (15%)
Query: 854 LSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDV 913
+S+ F +V+Y M+ +G L ++S G AL+G +G+GK+TLM
Sbjct: 1 MSIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQH 52
Query: 914 LAGRKTGGYTEGDISISGYPKNQATFA--------RVSGYCEQNDIHSPHVTVYESLLFS 965
+ G I+I+GY T +VS + + TV + + F
Sbjct: 53 FNALLKP--SSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG 110
Query: 966 AWLRLSSDIDSKT------RKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIA 1019
S+ ++K +K+ + E DL+ P LS Q +R+ IA
Sbjct: 111 PKNFGFSEDEAKEKALKWLKKVGLSE--DLISKSPFE-----------LSGGQMRRVAIA 157
Query: 1020 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1079
+ P I+ +DEP +GLD +M+ ++ G TV+ H D+ E D++L
Sbjct: 158 GVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVL 216
Query: 1080 LMKRGGQVIYAGP 1092
+++ G + +A P
Sbjct: 217 VLEHGKLIKHASP 229
|
Length = 287 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 32/216 (14%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR 941
+L+DVS PG +TAL+G SG+GK+T++ +L G + + G P +Q
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALL--ENFYQPQGGQVLLDGKPISQ----- 80
Query: 942 VSGYCEQNDIHSPHVTV-YESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
Y E +HS V E +LF+ L+ D+ + + E +A
Sbjct: 81 ---Y-EHKYLHSKVSLVGQEPVLFARSLQ-----DNIAYGLQSCSFECVKEAAQKAHAHS 131
Query: 1001 GLPGV-DGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
+ + G TE Q++R+ IA L+ NP ++ +DE TS LDA + V +
Sbjct: 132 FISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQ 191
Query: 1049 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
+ + RTV+ H+ + E D++L++ G
Sbjct: 192 ALYDW-PERRTVLVIAHR--LSTVERADQILVLDGG 224
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 3e-09
Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 56/244 (22%)
Query: 196 SRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGH-----EFKEFVP--QRTCAY 248
+T L GP G+GKT+L+ +AG D G+I+ G E F+P +R Y
Sbjct: 24 RGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGY 80
Query: 249 ISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATAL 308
+ Q+ F TVR + + + + R +
Sbjct: 81 VFQDARLFPHYTVRGNLRY------------GMWKSMRAQ-------------------- 108
Query: 309 AGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEI 368
D ++ LLG+ + D+ +SGG+K+RV G L+ ++LLMDE
Sbjct: 109 --------FDQLVALLGI-----EHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEP 155
Query: 369 STGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPRE 428
LD +I Y++++ + I I+ + E L D +++L G++ GP E
Sbjct: 156 LASLDLPRKREILPYLERLRDEINI-PILYVSHSLDEVLRLADRVVVLENGKVKASGPLE 214
Query: 429 KVLE 432
+V
Sbjct: 215 EVWG 218
|
Length = 352 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 3e-09
Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 21/171 (12%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ-- 936
R Q+L D+S G + AL+G SG+GKTTL+ ++AG + T G I G ++
Sbjct: 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLH 70
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWL-----RLSSD-IDSKTRKMFVDEVMDLV 990
A +V G+ Q+ H+TV++++ F + R ++ I +K V +++++V
Sbjct: 71 ARDRKV-GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAK-----VTQLLEMV 124
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
+L L + P LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 125 QLAHLADR---YPA--QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-09
Identities = 59/216 (27%), Positives = 100/216 (46%), Gaps = 20/216 (9%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L +S V PG AL+G SG+GK+TL++++ + G I + G+ T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 944 GYCEQNDIHSPHVTVYESLLFS--AWLRLSSDIDSKTRKMFVDE-VMDLVELEPL-TNAM 999
Q + S V ++ + + A+ R ++ + D V+ PL +
Sbjct: 406 ---RQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTP 462
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---T 1056
+G GV LS QR+RL IA L+ + I+ +DE TS LD + R V+ ++
Sbjct: 463 IGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESE----RLVQAALERLMQ 517
Query: 1057 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
GRT + H+ S E D +++M G+++ G
Sbjct: 518 GRTTLVIAHRLS--TIEKADRIVVMDD-GRIVERGT 550
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 3e-09
Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 37/228 (16%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---TEGDISISGYPKNQATF 939
+L D+S PG A++G +GAGKTTL+ +L G + GD+++ G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG-----EHPPSSGDVTLLGRRFGKGET 100
Query: 940 AR--------VSGYCEQNDIHSPHVTVYESLLFSAW------LRLSSDIDSKTRKMFVDE 985
VS E ++ TV + +L S + +
Sbjct: 101 IFELRKRIGLVSS--ELHERFRVRETVRDVVL-SGFFASIGIYQEDLT---AEDLAAAQW 154
Query: 986 VMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
+++L+ + L + G LS +++R+ IA LV +P ++ +DEP GLD A
Sbjct: 155 LLELLGAKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQ 209
Query: 1046 VMRTVR--NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
++ + ++ H +I F LL+K G+V+ G
Sbjct: 210 LLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLK-EGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 23/219 (10%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGY------PKNQA 937
L+DVS G + ++G SGAGK+TL+ + G + T G + + G K
Sbjct: 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELR 78
Query: 938 TFARVSGYCEQ--NDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL 995
R G Q N + S TV+E++ L ++ + + V E+++LV LE
Sbjct: 79 KARRRIGMIFQHFNLLSSR--TVFENVALP--LEIAG-VPKAEIEERVLELLELVGLEDK 133
Query: 996 TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-V 1054
+A P LS Q++R+ IA L NP ++ DE TS LD ++ +R+
Sbjct: 134 ADAY---PA--QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR 188
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093
+ G T+V H+ + + D + +M++ G+V+ G +
Sbjct: 189 ELGLTIVLITHEMEV-VKRICDRVAVMEK-GEVVEEGTV 225
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 3e-09
Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 32/222 (14%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
+ DVS R G + +MG+SG+GK+TL+ + T G + I G + +
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELR 97
Query: 944 -------GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT 996
Q+ PH TV E++ F ++ + R+ E ++LV LE
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWE 154
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIVMRTVRN 1052
+ D LS ++R+ +A L +P I+ MDE S LD ++R
Sbjct: 155 HKYP-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 1053 TVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGQVIYAG 1091
+T+V H D+ EA D + +MK G+++ G
Sbjct: 210 ---LQKTIVFITH----DLDEALRLGDRIAIMK-DGRLVQVG 243
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 22/196 (11%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG-------YPK 934
Q L D++ G L+G SGAGK++L+ VL + G ++I+G P
Sbjct: 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPS 73
Query: 935 NQATFA--RVSGYCEQNDIHSPHVTVYESLLFSAWLRLS--SDIDSKTRKMFVDEVMDLV 990
++A R G Q PH+TV E+L+ A R+ S + R +++ +
Sbjct: 74 DKAIRDLRRNVGMVFQQYNLWPHLTVQENLI-EAPCRVLGLSKDQALARAE---KLLKRL 129
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
L+P + P LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +
Sbjct: 130 RLKPYADR---YP--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184
Query: 1051 RNTVDTGRTVVCTIHQ 1066
+ +TG T V H+
Sbjct: 185 KELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 51/228 (22%), Positives = 90/228 (39%), Gaps = 47/228 (20%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR 941
++L+ V+ + G + ALMG +G+GK+TL + G TEG+I G
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---------- 63
Query: 942 VSGYCEQNDIHSPHVTVYESL---LFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNA 998
DI + E +F A+ +I F+ V N
Sbjct: 64 -------EDI--TDLPPEERARLGIFLAFQY-PPEIPGVKNADFLRYV----------N- 102
Query: 999 MVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
+G S ++KR I L+ P + +DEP SGLD A +V + + G+
Sbjct: 103 -------EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155
Query: 1059 TVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEA 1106
+V+ H + + D + ++ G+++ +G ++L E
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYD-GRIVKSGD-----KELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 4e-09
Identities = 57/244 (23%), Positives = 97/244 (39%), Gaps = 52/244 (21%)
Query: 193 VKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQ 251
V + +LGP GAGK+TLL +AG +G+I G + P +R + + Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 252 NDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQ 311
+ F +TV + + G+ P +K A +
Sbjct: 79 ENNLFAHLTVAQNIGL------------------------GLSPG------LKLNAEQRE 108
Query: 312 KTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTG 371
K + +GL ++ +SGGQ++RV LV +LL+DE +
Sbjct: 109 KV----EAAAAQVGLAGF-----LKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSA 159
Query: 372 LDSSTTFQICKYMKQMVHVLEITTIVSLL----QPAPEAYDLFDNIILLSEGQIVYQGPR 427
LD + + M +V L ++LL P +A + D ++ L G+I QG
Sbjct: 160 LDPALRAE----MLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGST 214
Query: 428 EKVL 431
+++L
Sbjct: 215 QELL 218
|
Length = 231 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-09
Identities = 58/184 (31%), Positives = 80/184 (43%), Gaps = 30/184 (16%)
Query: 877 EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP--- 933
D +L DVS PG A++G SG+GK+TL+ +L G +T G + G
Sbjct: 462 RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAG 519
Query: 934 KNQATFARVSGYCEQN-DIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMD---L 989
+ R G QN + S +++E++ A L L DE + +
Sbjct: 520 LDVQAVRRQLGVVLQNGRLMSG--SIFENIAGGAPLTL-------------DEAWEAARM 564
Query: 990 VELEPLTNAM-VGL-----PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
L AM +G+ G LS QR+RL IA LV P I+ DE TS LD R
Sbjct: 565 AGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQ 624
Query: 1044 AIVM 1047
AIV
Sbjct: 625 AIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 4e-09
Identities = 53/208 (25%), Positives = 88/208 (42%), Gaps = 28/208 (13%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGY----- 932
ED+ ++L+ V+ + G + A+MG +G+GK+TL +AG + T G I G
Sbjct: 11 EDK-EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL 69
Query: 933 -PKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVE 991
P +A + Q P V+ E +LR + + R +E +DL++
Sbjct: 70 EPDERARAGLFLAF--QYPEEIPGVSNLE------FLRSALNA---RRSARGEEPLDLLD 118
Query: 992 LEPLTNAMVGLPGVD----------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
L A + L G+D G S ++KR I + P + +DE SGLD
Sbjct: 119 FLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDID 178
Query: 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
A IV + + R+ + H +
Sbjct: 179 ALKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-09
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 41/195 (21%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCG---HEFKEFV 241
+L VS + P +LGP G+GK+TLL LAG LD L G++ G +
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLD---PLQGEVTLDGVPVSSLDQDE 406
Query: 242 PQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
+R + +Q D H + TVRE + R T E+ A + R G+
Sbjct: 407 VRRRVSVCAQ-DAHLFDTTVRENLRL-AR--PDATDEELWAALER----VGLADWLR--- 455
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
AL GL DT++G+ R +SGG+++R+ L+ A
Sbjct: 456 -----ALPD--------------GL----DTVLGEGGAR-LSGGERQRLALARALLADAP 491
Query: 362 VLLMDEISTGLDSST 376
+LL+DE + LD+ T
Sbjct: 492 ILLLDEPTEHLDAET 506
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-09
Identities = 46/190 (24%), Positives = 73/190 (38%), Gaps = 46/190 (24%)
Query: 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLA 915
L F +V+ D LL+D+S G A++G +GAGK+TL+ +LA
Sbjct: 322 LEFENVSKGYD------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLA 369
Query: 916 GRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDID 975
G G G + + G F ++++ P TV E L +
Sbjct: 370 G--ELGPLSGTVKV-GETVKIGYFD-----QHRDEL-DPDKTVLEEL----SEGFPDGDE 416
Query: 976 SKTRKMFVDEVMDLVELEPLTNAMVGLPG------VDGLSTEQRKRLTIAVELVANPSII 1029
+ R G G V LS ++ RL +A L+ P+++
Sbjct: 417 QEVRAYL---------------GRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLL 461
Query: 1030 FMDEPTSGLD 1039
+DEPT+ LD
Sbjct: 462 LLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 5e-09
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 50/229 (21%)
Query: 201 LLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEM 259
++GP GAGK+TLL +AG ++ +G IK P QR + + Q + F +
Sbjct: 29 IMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL 85
Query: 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDY 319
TVR+ + G+ P +K A +K
Sbjct: 86 TVRQNIGL------------------------GLHPG------LKLNAEQQEKVV----- 110
Query: 320 VLKLLGLDICADTMVGDQMRR---GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSST 376
D + D + R +SGGQ++RV LV P +LL+DE + LD
Sbjct: 111 -------DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLL 163
Query: 377 TFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQG 425
++ +KQ+ + T ++ + +A + I ++S+G+I
Sbjct: 164 REEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 5e-09
Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 21/197 (10%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYTEGDISISGYPKNQATFARVSGYCEQND 950
G + A+MG SGAGK+TL++++AG G D S +G Q S ++N+
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPV---SMLFQENN 80
Query: 951 IHSPHVTVYES--LLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGL 1008
+ H+TV ++ L L+L+++ K V+D + + + + LP L
Sbjct: 81 LF-AHLTVRQNIGLGLHPGLKLNAEQQEK--------VVDAAQQVGIADYLDRLPE--QL 129
Query: 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQP 1067
S QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H
Sbjct: 130 SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189
Query: 1068 SIDIFEAFDELLLMKRG 1084
S D ++ ++ +G
Sbjct: 190 S-DARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 6e-09
Identities = 66/256 (25%), Positives = 98/256 (38%), Gaps = 65/256 (25%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
++ +S V+ LLGP GAGKTT L L G D G I CG E VP R
Sbjct: 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCG----EPVPSR 74
Query: 245 T------CAYISQNDLHFGEMTVRETMDFSGRCLGVGT-----RYEMLAEISRREKEAGI 293
+ Q D + TVRE + GR G+ L E ++ E +
Sbjct: 75 ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK--- 131
Query: 294 KPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTG 353
AD VG+ +SGG K+R+T
Sbjct: 132 ------------------------------------ADAKVGE-----LSGGMKRRLTLA 150
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413
LV VL++DE +TGLD + + ++ ++ + TI+ EA L D +
Sbjct: 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGK--TILLTTHFMEEAERLCDRL 208
Query: 414 ILLSEGQIVYQG-PRE 428
++ EG+ + +G P
Sbjct: 209 CVIEEGRKIAEGAPHA 224
|
Length = 306 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-09
Identities = 71/246 (28%), Positives = 109/246 (44%), Gaps = 41/246 (16%)
Query: 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG 916
F V++S D QG+E DVS +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGVE--------DVSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 917 RKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDS 976
++ G I I G T A + + V ++ LF+ R D
Sbjct: 382 QRVFDPQSGRILIDGTDIRTVTRASLR--------RNIAVVFQDAGLFN---RSIEDNIR 430
Query: 977 KTRKMFVDEVM----------DLVELEPLT-NAMVGLPGVDGLSTEQRKRLTIAVELVAN 1025
R DE M D +E +P + +VG G LS +R+RL IA L+ +
Sbjct: 431 VGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKD 489
Query: 1026 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085
P I+ +DE TS LD A V + + + GRT H+ S + A D +L+ G
Sbjct: 490 PPILILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLST-VRNA-DRILVFDN-G 545
Query: 1086 QVIYAG 1091
+V+ +G
Sbjct: 546 RVVESG 551
|
Length = 588 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 6e-09
Identities = 65/236 (27%), Positives = 107/236 (45%), Gaps = 46/236 (19%)
Query: 193 VKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEF-KEFVPQRTCAYISQ 251
+K M LLGP G GKTT+L +AG L+ G+I G + + QR + Q
Sbjct: 29 IKQGTMVTLLGPSGCGKTTVLRLVAG-LEK--PTEGQIFIDGEDVTHRSIQQRDICMVFQ 85
Query: 252 NDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQ 311
+ F M++ E + + + LGV E +R KEA
Sbjct: 86 SYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA-------------------- 120
Query: 312 KTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTG 371
L+L+ L D V DQ +SGGQ++RV L+ KVLL DE +
Sbjct: 121 ---------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARALILKPKVLLFDEPLSN 166
Query: 372 LDSSTTFQICKYMKQMVHVLEITTI-VSLLQPAPEAYDLFDNIILLSEGQIVYQGP 426
LD++ + + ++++ IT++ V+ Q EA+ + D +I++++G+I+ G
Sbjct: 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQ--SEAFAVSDTVIVMNKGKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 6e-09
Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 29/209 (13%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQND-- 950
G L L+G +GAGKTTL+ + G +G + ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGKGW--RHIGYVPQRHEF 60
Query: 951 -----IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGV 1005
I H + WLR D V + + V L L + VG
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRPVG---- 112
Query: 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
LS QR+R+ +A L PS++ +DEP +GLD ++ G ++ T H
Sbjct: 113 -ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
Query: 1066 QPSIDIFEAF---DELLLMKRGGQVIYAG 1091
D+ +A D ++L+ G+VI G
Sbjct: 172 ----DLAQAMATCDRVVLLN--GRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 8e-09
Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 40/230 (17%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYTEGDISISGYPKNQ 936
L++VS G A++G +G+GK+T+ +L G K G+I I G ++
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP---QSGEIKIDGITISK 75
Query: 937 ATFARVS---GYCEQN-DIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVM----- 987
+ G QN D TV + + F + + K K +D++
Sbjct: 76 ENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAKKVGM 132
Query: 988 -DLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
D ++ EP LS Q++R+ IA L NP II DE TS LD + +
Sbjct: 133 EDYLDKEPQN-----------LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREI 181
Query: 1047 ---MRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELLLMKRGGQVIYAG 1091
M +R T +T++ H D+ EA D++++ G++I G
Sbjct: 182 KKIMVDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 8e-09
Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 69/194 (35%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYTEGDISISGYPK 934
L+D++ +TAL+G SG GK+TL+ D++ G + EG++ + G
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV----EGEVLLDG--- 73
Query: 935 NQATFARVSGYCEQNDIHSPHVTVYE-----SLLF--------------SAWLRLSSDID 975
+I+ P V V E ++F + LRL D
Sbjct: 74 --------------KNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD 119
Query: 976 SKTRKMFVDEVMDLVELEPLTNAMVGL----------PGVDGLSTEQRKRLTIAVELVAN 1025
E+ ++VE L A L + GLS Q++RL IA L
Sbjct: 120 --------KELDEIVE-SSLKKA--ALWDEVKDRLHKSAL-GLSGGQQQRLCIARALAVK 167
Query: 1026 PSIIFMDEPTSGLD 1039
P ++ MDEPTS LD
Sbjct: 168 PEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 8e-09
Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 25/210 (11%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L+DVS G L+G +GAGK+TL+ +LAG G +++ G RVS
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRG---------RVS 86
Query: 944 GYCEQNDIHSPHVTVYESLLFSA-WLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001
+P +T E++ + L LS +ID K +DE+++ EL +
Sbjct: 87 SLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEK-----IDEIIEFSELGDFID---- 137
Query: 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
LP V S+ + RL A+ P I+ +DE + DA R +R + G+TV+
Sbjct: 138 LP-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVI 196
Query: 1062 CTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
H PS I D L++++ G++ + G
Sbjct: 197 LVSHDPSS-IKRLCDRALVLEK-GKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 66/271 (24%), Positives = 108/271 (39%), Gaps = 52/271 (19%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP--- 242
+ +++ + +L+GP G+GKTT + + ++ +G+I G + +E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73
Query: 243 QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAY 302
+R Y+ Q F MTV E + + L +I R E
Sbjct: 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPK-----EKIRERADEL----------- 117
Query: 303 MKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKV 362
L L+GLD D+ +SGGQ++RV L +
Sbjct: 118 ------------------LALVGLD---PAEFADRYPHELSGGQQQRVGVARALAADPPL 156
Query: 363 LLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIV 422
LLMDE LD T Q+ + K++ L TIV + EA+ L D I ++ G+IV
Sbjct: 157 LLMDEPFGALDPITRDQLQEEFKRLQQELG-KTIVFVTHDIDEAFRLADRIAIMKNGEIV 215
Query: 423 YQGPREKVLEFFEYMGFKCPDRKGVADFLQE 453
G +++L + P VA+F+
Sbjct: 216 QVGTPDEIL--------RSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 67/275 (24%), Positives = 115/275 (41%), Gaps = 63/275 (22%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLT-GKIKYCGHEFKEF 240
K +ILK V+ VK + ++GP G+GK+TL + G ++T G+I + G + E
Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGEDILEL 73
Query: 241 VP-QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD--P 297
P +R A I + + ++ GV + A ++ R GI P+
Sbjct: 74 SPDERARAGIF--------LAFQYPVEIP----GVTNSDFLRAAMNARRGARGILPEFIK 121
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV----SGGQKKRVTTG 353
E+ +LLGLD + + R V SGG+KKR
Sbjct: 122 ELKEKA------------------ELLGLD-------EEFLERYVNEGFSGGEKKRNEIL 156
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQM----VHVLEIT---TIVSLLQPAPEA 406
++L+ K+ ++DE +GLD + + + + VL IT ++ ++P
Sbjct: 157 QLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKP---- 212
Query: 407 YDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKC 441
D + +L +G+IV G E + E E G+
Sbjct: 213 ----DKVHVLYDGRIVKSGDPE-LAEELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 36/162 (22%), Positives = 53/162 (32%), Gaps = 50/162 (30%)
Query: 210 TTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP----QRTCAYISQNDLHFGEMTVRETM 265
+TLL + G L +G I G + ++ + Q+ F E+TVRE +
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 266 DFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLG 325
F R E A L+ +G
Sbjct: 58 FFGLR------DKEADARAEE---------------------------------ALERVG 78
Query: 326 LDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDE 367
L D + SGGQK+RV L+ K+LL+DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-08
Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 51/258 (19%)
Query: 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF 240
++ + LK+ + + +LG G+GK+TLL LAG D G I G E
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASL 405
Query: 241 VPQ---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
Q T + ++Q +H T+R+ + LA +A D
Sbjct: 406 DEQALRETISVLTQ-RVHLFSGTLRDNL--------------RLAN-----PDAS---DE 442
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLV 357
E+ A ++ L S +T +G+ R +SGG+++R+ L+
Sbjct: 443 ELWAALQQVGLEKLLESAPDGL-----------NTWLGE-GGRRLSGGERRRLALARALL 490
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVH---VLEITTIVSLLQPAPEAYDLFDNII 414
A + L+DE + GLD T Q+ + + +L +T + L + D II
Sbjct: 491 HDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGL-------ERMDRII 543
Query: 415 LLSEGQIVYQGPREKVLE 432
+L G+I+ +G ++L
Sbjct: 544 VLDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 62/248 (25%), Positives = 103/248 (41%), Gaps = 45/248 (18%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFK----EF 240
IL D+S V P ++GP GAGKTTLL L G + +G + G F F
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG---EHPPSSGDVTLLGRRFGKGETIF 102
Query: 241 VPQRTCAYISQNDLHF---GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
++ +S ++LH TVR+ + SG Y+ +++ + A
Sbjct: 103 ELRKRIGLVS-SELHERFRVRETVRDVV-LSGF-FASIGIYQ--EDLTAEDLAAAQW--- 154
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLV 357
+L+LLG AD G +S G+++RV LV
Sbjct: 155 ----------------------LLELLGAKHLADRPFGS-----LSQGEQRRVLIARALV 187
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417
++L++DE + GLD Q+ ++++ ++ + A E F + +LL
Sbjct: 188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLK 247
Query: 418 EGQIVYQG 425
EG++V QG
Sbjct: 248 EGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 67/267 (25%), Positives = 109/267 (40%), Gaps = 55/267 (20%)
Query: 174 RILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYC 233
++ K+ LKDVS V + ++G GAGK+TL+ + G + +G +
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL---ERPTSGSVLVD 65
Query: 234 GHEFKEFVP------QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLA---EI 284
G + +R I Q HF ++ R T +E +A EI
Sbjct: 66 GTDLTLLSGKELRKARRRIGMIFQ---HFNLLSSR-------------TVFENVALPLEI 109
Query: 285 SRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSG 344
+ K EI+ + L L+L+GL+ AD +SG
Sbjct: 110 AGVPKA-------EIEE--RVLEL------------LELVGLEDKADAYPAQ-----LSG 143
Query: 345 GQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAP 404
GQK+RV L KVLL DE ++ LD TT I ++ + L + TIV +
Sbjct: 144 GQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGL-TIVLITHEME 202
Query: 405 EAYDLFDNIILLSEGQIVYQGPREKVL 431
+ D + ++ +G++V +G E+V
Sbjct: 203 VVKRICDRVAVMEKGEVVEEGTVEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 41/207 (19%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDI-- 951
G + L+G SG GKTT++ ++AG + TEG I I G + +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDVTHRSI-------QQRDICM 82
Query: 952 --HS----PHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGV 1005
S PH+++ E++ + L++ + + RK V E ++LV+L + V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKMLG-VPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTV 1060
D +S Q++R+ +A L+ P ++ DEP S LDA + R++R + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 1061 VCTIHQPSIDIFEAF---DELLLMKRG 1084
+ H S EAF D +++M +G
Sbjct: 191 LYVTHDQS----EAFAVSDTVIVMNKG 213
|
Length = 351 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 2e-08
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 320 VLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQ 379
L+LLGL AD + +SGG+++RV L +LL+DE ++ LD + +
Sbjct: 81 ALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIE 135
Query: 380 ICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQG 425
+ + ++++ T ++ L A D +ILL +G+IV QG
Sbjct: 136 LLELLRRLARERGKTVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 45/193 (23%), Positives = 73/193 (37%), Gaps = 43/193 (22%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-- 242
+L +V+ + + L+GP G GK+TLL + G L TG++ + +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL-DMLPAA 75
Query: 243 QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAY 302
QR + Q+ L F ++V + + F+ +
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFA------------------------LPAT------ 105
Query: 303 MKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKV 362
L G A + L+ GLD Q +SGGQ+ RV L+ K
Sbjct: 106 -----LKGNARRNAANAALERSGLDGAF-----HQDPATLSGGQRARVALLRALLAQPKA 155
Query: 363 LLMDEISTGLDSS 375
LL+DE + LD +
Sbjct: 156 LLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 64/270 (23%), Positives = 102/270 (37%), Gaps = 68/270 (25%)
Query: 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKL----TGKIKYCG 234
+ L DVS + + ++G GAGK+TLL + L +G + G
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL-------LERPTSGSVFVDG 67
Query: 235 HEFKEFVP------QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRRE 288
+ ++ I Q+ TV E + F LA + + E
Sbjct: 68 QDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLE----------LAGVPKAE 117
Query: 289 KEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR---GVSGG 345
+ + L L+L+GL D+ R +SGG
Sbjct: 118 IKQ------------RVAEL------------LELVGLS--------DKADRYPAQLSGG 145
Query: 346 QKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPE 405
QK+RV L K+LL DE ++ LD TT I + +K + L + TIV L+ E
Sbjct: 146 QKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGL-TIV-LITHEME 203
Query: 406 AY-DLFDNIILLSEGQIVYQGPREKVLEFF 434
+ D + +L +G++V +G V E F
Sbjct: 204 VVKRICDRVAVLDQGRLVEEGT---VSEVF 230
|
Length = 339 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-08
Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 12/149 (8%)
Query: 901 GVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA-RVSGYCEQNDIHSPHVTVY 959
G SG GK+TL+ ++AG + T GD+ I N A R G Q+ PH++V
Sbjct: 36 GPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVA 93
Query: 960 ESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIA 1019
E++ F L+L+ + V++V ++++L L + P LS QR+R+ I
Sbjct: 94 ENMSFG--LKLAG-AKKEEINQRVNQVAEVLQLAHLLDR---KP--KALSGGQRQRVAIG 145
Query: 1020 VELVANPSIIFMDEPTSGLDARAAAIVMR 1048
LVA PS+ +DEP S LDA A + MR
Sbjct: 146 RTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 39/233 (16%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYTEGDISISGYPKN 935
+L+ V +PG + G +G+GK++L +D+ G+ +G I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV---IDG-IDISKLPL- 90
Query: 936 QATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL 995
+R+S + + + +LFS +R + D + K D + + +E+ L
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTD---DRLWEALEIAQL 135
Query: 996 TNAMVGLPG-VDGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
N + LPG +D + TE QR+ +A V SI+ MDE T+ +D I+
Sbjct: 136 KNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENIL 195
Query: 1047 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQK 1099
+ V T RTVV H+ S I +A D +L++ RG V P +Q+
Sbjct: 196 QKVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRGILVECDTPENLLAQE 245
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 18/189 (9%)
Query: 890 VFRPGVLTALMGVSGAGKTTLMDVLAGR------KTGGYTEGDISISGYPKN--QATFAR 941
V R G + L+G +G GK+T + +LAG+ K + D + + + Q F +
Sbjct: 22 VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81
Query: 942 VSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKM-FVDEVMDLVELEPLTNAMV 1000
+ D+ Y L+ A ++ K + +DE++D +EL + +
Sbjct: 82 LLE----GDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR-- 135
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
+D LS + +R+ IA L + F DEP+S LD + R +R + V
Sbjct: 136 ---NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYV 192
Query: 1061 VCTIHQPSI 1069
+ H ++
Sbjct: 193 LVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 21/221 (9%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT 938
D + L+ +S G TAL+G +GAGK+TL+ L G G + + G N
Sbjct: 16 DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREVNAEN 73
Query: 939 F----ARVSGYCEQNDIHSPHVTVYESLLFSAW-LRLSSD-IDSKTRKMFVDEVMDLVEL 992
++V + D TV++ + F + L D ++ + V+E + V +
Sbjct: 74 EKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR-----VEEALKAVRM 128
Query: 993 EPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
+ LS Q+KR+ IA L +P +I +DEP + LD R +M +
Sbjct: 129 WDFRDK-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDR 183
Query: 1053 TVDTGRTVVCTIHQPSIDI-FEAFDELLLMKRGGQVIYAGP 1092
+ G+TV+ H +D+ E D+++++K G +
Sbjct: 184 LHNQGKTVIVATH--DVDLAAEWADQVIVLKEGRVLAEGDK 222
|
Length = 274 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR 941
L +VS + G + AL+G +G+GK+TL+ +AG T G+I I G +
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 942 VS---GYCEQ 948
+ GY Q
Sbjct: 71 LRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-08
Identities = 61/254 (24%), Positives = 96/254 (37%), Gaps = 62/254 (24%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEF-KE- 239
+ + V+ V+ + LGP GAGKTT + L L +G + G++ +E
Sbjct: 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREP 61
Query: 240 --------FVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEA 291
VPQ ++T RE ++ GR G + + E E
Sbjct: 62 RKVRRSIGIVPQYASVDE--------DLTGRENLEMMGRLYG----------LPKDEAEE 103
Query: 292 GIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVT 351
+ +L+L L AD VG SGG ++R+
Sbjct: 104 RAEE------------------------LLELFELGEAADRPVG-----TYSGGMRRRLD 134
Query: 352 TGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411
L+ VL +DE +TGLD T I Y++ + E TI+ EA L D
Sbjct: 135 IAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE--EGVTILLTTHYMEEADKLCD 192
Query: 412 NIILLSEGQIVYQG 425
I ++ G+I+ +G
Sbjct: 193 RIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 61/251 (24%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF- 240
K ++L D+S VK + LGP GAGKTT + + G + D +G+I + G +++
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNI 68
Query: 241 -VPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
+R A I + +T RE + R LG+ I
Sbjct: 69 EALRRIGALIEAPGF-YPNLTARENLRLLARLLGI--------------------RKKRI 107
Query: 300 DAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGP 359
D VL ++GL A V G S G K+R+ L+G
Sbjct: 108 DE------------------VLDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLGN 144
Query: 360 AKVLLMDEISTGLDSSTTFQICKYMKQMVHVL---EITTIVS--LLQPAPEAYDLFDNII 414
+L++DE + GLD I K +++++ L IT ++S LL E + D I
Sbjct: 145 PDLLILDEPTNGLD---PDGI-KELRELILSLRDQGITVLISSHLLS---EIQKVADRIG 197
Query: 415 LLSEGQIVYQG 425
++++G+++ +G
Sbjct: 198 IINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 61/251 (24%), Positives = 107/251 (42%), Gaps = 44/251 (17%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ- 243
+L DVS + +T ++GP GAGK+TLL ++ L D +G+I G E +
Sbjct: 16 VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKE 72
Query: 244 --RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
+ + + Q + +TVR+ + F R+ R KE + I+
Sbjct: 73 LAKKLSILKQENHINSRLTVRDLVGFG--------RFPY--SQGRLTKEDRRIINEAIE- 121
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
Y+ L+ + Y+ +L SGGQ++R +L
Sbjct: 122 YLHLEDLSDR-------YLDEL-------------------SGGQRQRAFIAMVLAQDTD 155
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421
+L+DE LD + QI K ++++ L TIV +L A D+I+ L G++
Sbjct: 156 YVLLDEPLNNLDMKHSVQIMKILRRLADELG-KTIVVVLHDINFASCYSDHIVALKNGKV 214
Query: 422 VYQGPREKVLE 432
V QG +++++
Sbjct: 215 VKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 60/248 (24%), Positives = 108/248 (43%), Gaps = 50/248 (20%)
Query: 202 LGPPGAGKTTLLMALAGKLDDDLKLT-GKIKYCGHEFKEF-VPQR--TCAYISQNDLH-- 255
+G GAGK+TLL A+AG DLK T G+I G + + V +R A + Q+ L
Sbjct: 38 IGSNGAGKSTLLNAIAG----DLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGT 93
Query: 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSL 315
E+T+ E + LAE R K+ G+
Sbjct: 94 APELTIEENL--------------ALAE--SRGKKRGLSS--------------ALNERR 123
Query: 316 ATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSS 375
+ + +L L + + + D++ +SGGQ++ ++ + P K+LL+DE + LD
Sbjct: 124 RSSFRERLARLGLGLENRLSDRIGL-LSGGQRQALSLLMATLHPPKILLLDEHTAALDPK 182
Query: 376 TTFQICKYMKQMVHVLEITTIV---SLLQPAPEAYDLFDNIILLSEGQIV--YQGPREKV 430
T + + ++V ++TT++ ++ A D + +I+L G+IV G +
Sbjct: 183 TAEFVMELTAKIVEEHKLTTLMVTHNMED----ALDYGNRLIMLHSGKIVLDVTGEEKAS 238
Query: 431 LEFFEYMG 438
L + +
Sbjct: 239 LTVLDLIQ 246
|
Length = 263 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 51/213 (23%), Positives = 101/213 (47%), Gaps = 31/213 (14%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L+++S +PG ++G +G+GK++L +LA + + G I I G + +
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSL--LLALFRLVELSSGSILIDG--VDISKIGL-- 73
Query: 944 GYCEQNDIHSPHVTVY--ESLLFSAWLRLSSDIDSKTRKMFVDE----VMDLVELEPLTN 997
+D+ S +++ + +LFS +R + D + + DE ++ V L+
Sbjct: 74 -----HDLRS-RISIIPQDPVLFSGTIRSNLDPFGE----YSDEELWQALERVGLKEFVE 123
Query: 998 AMV-GLPGV-----DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
++ GL V + LS QR+ L +A L+ I+ +DE T+ +D A++ +T+R
Sbjct: 124 SLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR 183
Query: 1052 NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
TV+ H+ +D D +L++ +G
Sbjct: 184 -EAFKDCTVLTIAHR--LDTIIDSDRILVLDKG 213
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 58/242 (23%), Positives = 97/242 (40%), Gaps = 58/242 (23%)
Query: 861 VNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 920
V Y+ D+P +L++VS + G ++G +GAGK+TL +LA +
Sbjct: 14 VRYAPDLP-------------PVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 921 GYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESL--------LFSAWLRLSS 972
EG I I G + P + SL LFS +R +
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 973 DIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1032
D + + + + E G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSDEEIYGALRVSE------------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH--QPSIDIFEAFDELLLMKRGGQVIYA 1090
E T+ +D A++ +T+R T T++ H + ID +D++L+M G Y
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID----YDKILVMDAGEVKEYD 205
Query: 1091 GP 1092
P
Sbjct: 206 HP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 58/237 (24%), Positives = 99/237 (41%), Gaps = 60/237 (25%)
Query: 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLA 915
L+ ++V++S E Q+L+++S + G AL+G SG+GK+TL+ +L
Sbjct: 1 LSINNVSFSYP-----------EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLT 49
Query: 916 GRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDID 975
G +G+I++ G P + A S N P+ LF LR
Sbjct: 50 GDLKP--QQGEITLDGVPVSDLEKALSSLISVLN--QRPY-------LFDTTLR------ 92
Query: 976 SKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035
N +G S +R+RL +A L+ + I+ +DEPT
Sbjct: 93 --------------------NN--LGRR----FSGGERQRLALARILLQDAPIVLLDEPT 126
Query: 1036 SGLDARAAAIVMRTVRNTVDTGRTVV-CTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
GLD ++ + V +T++ T H I E D++L ++ G++I G
Sbjct: 127 VGLDPITERQLLSLIFE-VLKDKTLIWITHHLTGI---EHMDKILFLEN-GKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 32/181 (17%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYTEGDISISGYP 933
+ L++++ +TAL+G SG GK+TL+ D++ G R G I
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74
Query: 934 KNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFV---------- 983
+ R G Q P +++Y+++ + RL D K V
Sbjct: 75 IDVVELRRRVGMVFQKPNPFP-MSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAALW 131
Query: 984 DEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
DEV D + +A+ GLS Q++RL IA L P ++ +DEPTS LD A
Sbjct: 132 DEVKDRLH----DSAL-------GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIAT 180
Query: 1044 A 1044
Sbjct: 181 G 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 4e-08
Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 41/201 (20%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG--YPKNQ 936
DRL + F +TA +G +GAGKTT + +L G T G + + G N
Sbjct: 947 DRLNI------TFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKDIETNL 998
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT 996
+ G C Q++I H+TV E +LF A L+ S +++ +E+E
Sbjct: 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQ------------LEME--- 1043
Query: 997 NAMVGLPGV--------DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAI 1045
AM+ G+ LS +++L++A+ V + ++ +DEPTSG+D R+
Sbjct: 1044 -AMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD 1102
Query: 1046 VMRTVRNTVDTGRTVVCTIHQ 1066
++ R +GRT++ + H
Sbjct: 1103 LLLKYR----SGRTIIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 18/205 (8%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L+ V+ + G +L+G SG GK+TL+++++G T G + + G + R+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPGPDRMV 58
Query: 944 GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLP 1003
+ QN P +TV E++ A R+ D+ R+ V+E + LV LT A P
Sbjct: 59 VF--QNYSLLPWLTVRENIAL-AVDRVLPDLSKSERRAIVEEHIALVG---LTEAADKRP 112
Query: 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 1062
G LS ++R+ IA L P ++ +DEP LDA + + + TV+
Sbjct: 113 G--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM 170
Query: 1063 TIHQPSIDIFEAF---DELLLMKRG 1084
H D+ EA D ++++ G
Sbjct: 171 VTH----DVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 5e-08
Identities = 70/264 (26%), Positives = 108/264 (40%), Gaps = 58/264 (21%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
++ D+S + LLGP GAGK+T+ L G + D GKI G E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLG----EPVPSR 71
Query: 245 T------CAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
+ Q D E TVRE + GR G+ TR E EA I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTR----------EIEAVIPS--- 118
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVG 358
+L+ L+ AD V +SGG K+R+T L+
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418
++L++DE +TGLD I + ++ ++ + TI+ EA L D + +L
Sbjct: 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGK--TILLTTHFMEEAERLCDRLCVLES 210
Query: 419 GQIVYQGPREKVLEFFEYMGFKCP 442
G+ + +G +++ E +G C
Sbjct: 211 GRKIAEGRPHALID--EQIG--CN 230
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 5e-08
Identities = 64/231 (27%), Positives = 91/231 (39%), Gaps = 53/231 (22%)
Query: 201 LLGPPGAGKTTLLMALAG---KLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFG 257
LLGP GAGKTTLL A+ G +K+ G G +VPQR F
Sbjct: 11 LLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRH---------EFA 61
Query: 258 ---EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTS 314
++V T+ SGR +G RR A
Sbjct: 62 WDFPISVAHTV-MSGRTGHIG--------WLRRPCVADFA-------------------- 92
Query: 315 LATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDS 374
A L+ +GL AD VG+ +SGGQ++RV L VLL+DE TGLD
Sbjct: 93 -AVRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146
Query: 375 STTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQG 425
T + + ++ T I+ +A D ++LL+ G+++ G
Sbjct: 147 PTQELLTELFIELAG--AGTAILMTTHDLAQAMATCDRVVLLN-GRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 5e-08
Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 36/224 (16%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG---YPKNQATFA 940
+ D S G + +MG+SG+GK+TL+ +L T G+I + G + A
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELR 101
Query: 941 RVS----GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT 996
+ Q+ PH TV E++ F L + + R+ E ++LV LE
Sbjct: 102 ELRRKKISMVFQSFALLPHRTVLENVAFG--LEVQG-VPKAEREERALEALELVGLEGYA 158
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------V 1050
+ + LS ++R+ +A L +P I+ MDE S LD ++RT +
Sbjct: 159 DKYP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDP-----LIRTEMQDELL 208
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGQVIYAG 1091
+T+V H D+ EA D + +MK G+++ G
Sbjct: 209 ELQAKLKKTIVFITH----DLDEALRIGDRIAIMK-DGEIVQVG 247
|
Length = 386 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 6e-08
Identities = 43/191 (22%), Positives = 65/191 (34%), Gaps = 47/191 (24%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF--VP 242
+ D+S + + GP GAGKTTLL LAG L D G++ + G +
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESY 73
Query: 243 QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAY 302
+ Y+ E+T E + F
Sbjct: 74 HQALLYLGHQPGIKTELTALENLHF----------------------------------- 98
Query: 303 MKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKV 362
G + L +GL D VG +S GQ++RV + + PA +
Sbjct: 99 --WQRFHGSGNAATIWEALAQVGLAGLEDLPVGQ-----LSAGQQRRVALARLWLSPAPL 151
Query: 363 LLMDEISTGLD 373
++DE T LD
Sbjct: 152 WILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 52/219 (23%), Positives = 97/219 (44%), Gaps = 17/219 (7%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYTEGDISISGYPKNQAT 938
L++D++ + G + AL+G SG+GK+ ++ +L T T G+I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 939 F-ARVSGYCEQNDIHS--PHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL 995
R QN + P T+ + + LR + + R + + E ++ V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIET--LRSLGKLSKQARALIL-EALEAVGLPDP 115
Query: 996 TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1054
+ P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYPFQ--LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093
G ++ H + + DE+ +M G+++ G +
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDD-GRIVERGTV 210
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 6e-08
Identities = 61/259 (23%), Positives = 109/259 (42%), Gaps = 43/259 (16%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMAL--AGKLDDDLKLTGKIKYCGHEFKEFV 241
Q L D++ + +++T L+GP G GK+T L L L ++K+ G++ G
Sbjct: 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN----- 72
Query: 242 PQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
I D+ E+ R M F + Y+ +A R GIK E+D
Sbjct: 73 -------IYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIH---GIKDKKELD- 121
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR---GVSGGQKKRVTTGEMLVG 358
K A +K +L + V D +++ +SGGQ++R+ +
Sbjct: 122 --KIVEWALKKAALWDE---------------VKDDLKKSALKLSGGQQQRLCIARTIAV 164
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYD-----LFDNI 413
V+LMDE ++ LD +T +I M ++ I + +Q A D L ++
Sbjct: 165 KPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDL 224
Query: 414 ILLSEGQIVYQGPREKVLE 432
I ++ + ++ P++K E
Sbjct: 225 IEFNKTEKIFLEPQKKETE 243
|
Length = 251 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 7e-08
Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 42/227 (18%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATFA 940
L+ +S + G ++G SG+GK+TL +L G T G + + G Q
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLG 409
Query: 941 RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDE------VMDLVELEP 994
R GY Q D+ T+ E++ R + D + V E V +L+
Sbjct: 410 RHIGYLPQ-DVELFDGTIAENIA-----RFGEEADPEK----VIEAARLAGVHELI---- 455
Query: 995 LTNAMVGLP-------GVDG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
+ LP G G LS QR+R+ +A L +P ++ +DEP S LD+ A
Sbjct: 456 -----LRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA 510
Query: 1046 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
+ + G TVV H+PS + D++L+++ G++ GP
Sbjct: 511 LAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQ-DGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 7e-08
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDI 1071
++RL IA LV P ++FMDEPT GLD A ++ +R V + G VV H ++
Sbjct: 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVAR 216
Query: 1072 FEAFDELLLMKRGGQVIYAG 1091
A D L++MK+ GQV+ +G
Sbjct: 217 LLA-DRLMVMKQ-GQVVESG 234
|
Length = 258 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 8e-08
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 334 VGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEI 393
V + + G+SGGQ++RV L VLL+DE ++ LD T ++ +K + L I
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGI 152
Query: 394 TTIVSLLQPAPEAYDLFDNIILLSEGQ 420
T ++ EA L D +++L +G+
Sbjct: 153 TVVLVTHDLD-EAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 8e-08
Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 30/226 (13%)
Query: 894 GVLTALMGVSGAGKTTLMDVL-------AGRKTGGYTEGDISISGYPKNQATFARVS-GY 945
G + +MG+SG+GK+T + +L AG+ + +G+ + P R G
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVELREVRRKKIGM 75
Query: 946 CEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGV 1005
Q PH+T+ ++ L + RK E++ LV LE + P
Sbjct: 76 VFQQFALFPHMTILQNTSLGPEL---LGWPEQERKEKALELLKLVGLEEYEHRY---P-- 127
Query: 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTI 1064
D LS ++R+ +A L A P I+ MDE S LD + ++ T +T+V
Sbjct: 128 DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFIT 187
Query: 1065 HQPSIDIFEAF---DELLLMKRGGQVIYAGP---LGRQSQKLVEYF 1104
H D+ EA D +++MK G V P L + + VE F
Sbjct: 188 H----DLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEF 229
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 8e-08
Identities = 67/255 (26%), Positives = 109/255 (42%), Gaps = 45/255 (17%)
Query: 858 FHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 917
F H+ + + +QG+ DVS + G A++G +GAGKTTL+++L +
Sbjct: 337 FRHITF--EFAN--SSQGV--------FDVSFEAKAGQTVAIVGPTGAGKTTLINLL--Q 382
Query: 918 KTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESL-LFSAWLRLSSDIDS 976
+ T G I I G N T + + TV++ LF+ +R + +
Sbjct: 383 RVYDPTVGQILIDGIDINTVT---------RESLRKSIATVFQDAGLFNRSIRENIRLGR 433
Query: 977 KTRKMFVDEVMDLVE-------LEPLTNAMVGLPGVDG--LSTEQRKRLTIAVELVANPS 1027
+ +EV + + + +N L G G LS +R+RL IA ++ N
Sbjct: 434 EGATD--EEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAP 491
Query: 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDT---GRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
I+ +DE TS LD A V+N +D RT H+ S + A +L+L
Sbjct: 492 ILVLDEATSALDVETEA----RVKNAIDALRKNRTTFIIAHRLST-VRNA--DLVLFLDQ 544
Query: 1085 GQVIYAGPLGRQSQK 1099
G++I G QK
Sbjct: 545 GRLIEKGSFQELIQK 559
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 17/152 (11%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR--VSGYCEQN 949
G A++G SGAGK+TL++++AG T G ++++G +R VS ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 950 DIHSPHVTVYE--SLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDG 1007
++ H+TV + L + L+L++ ++ + + + +E L LPG
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAA-----QREKLHAIARQMGIEDLLAR---LPG--Q 129
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 9e-08
Identities = 60/256 (23%), Positives = 103/256 (40%), Gaps = 44/256 (17%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMAL--AGKLDDDLKLTGKIKYCGHEFKE-- 239
Q +K+V+ V+ + L+GP G GKTT L A+ L ++TG+I G +
Sbjct: 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77
Query: 240 ---FVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
+R + Q F M+V + + + G+ R + L E++ R D
Sbjct: 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDR-DHLMEVAERSLRGAALWD 136
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
E+ +K A G+SGGQ++R+ L
Sbjct: 137 -EVKDRLKTPA--------------------------------TGLSGGQQQRLCIARAL 163
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416
++LLMDE ++ LD ++T +I M + V TTI+ + +A + D
Sbjct: 164 AVEPEILLMDEPTSALDPASTARIEDLMTDLKKV---TTIIIVTHNMHQAARVSDTTSFF 220
Query: 417 SEGQIVYQGPREKVLE 432
G +V GP +++
Sbjct: 221 LVGDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 9e-08
Identities = 71/282 (25%), Positives = 114/282 (40%), Gaps = 53/282 (18%)
Query: 854 LSLAFHHVNYSVD--MPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLM 911
+ + +V+Y+ P E +A L DV+ G TA +G +G+GK+T+M
Sbjct: 1 MGINLQNVSYTYQAGTPFEGRA----------LFDVNLTIEDGSYTAFIGHTGSGKSTIM 50
Query: 912 DVLAGRKT---GGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTV------YESL 962
+L G G D I+ KN+ DI V ES
Sbjct: 51 QLLNGLHVPTQGSVRVDDTLITSTSKNK-------------DIKQIRKKVGLVFQFPESQ 97
Query: 963 LFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDG---------LSTEQR 1013
LF + D+ + V + E E L + L G+ LS Q
Sbjct: 98 LFEE--TVLKDVAFGPQNFGVSQE----EAEALAREKLALVGISESLFEKNPFELSGGQM 151
Query: 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1073
+R+ IA L P I+ +DEPT+GLD + +M + +G T+V H D+
Sbjct: 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVAN 210
Query: 1074 AFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVP-GVPRIT 1114
D + ++++G V+ P + + V++ E GVP+IT
Sbjct: 211 YADFVYVLEKGKLVLSGKP--KDIFQDVDFLEEKQLGVPKIT 250
|
Length = 280 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 41/183 (22%), Positives = 64/183 (34%), Gaps = 44/183 (24%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
+L+D++ V+ +LGP G GK+TLL +AG +G++ G P
Sbjct: 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTG--PGP 72
Query: 245 TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMK 304
Y+ Q D +TV + + G S+ E ++
Sbjct: 73 DIGYVFQEDALLPWLTVLDNVALGLELRGK----------SKAEARE------RAKELLE 116
Query: 305 ATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLL 364
LAG Y +L SGG ++RV L K+LL
Sbjct: 117 LVGLAG----FEDKYPHQL-------------------SGGMRQRVAIARALATRPKLLL 153
Query: 365 MDE 367
+DE
Sbjct: 154 LDE 156
|
Length = 248 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-07
Identities = 63/241 (26%), Positives = 102/241 (42%), Gaps = 54/241 (22%)
Query: 199 TLLLGPPGAGKTTLLMALAGKLDDD---LKLTGKIKYCGHEFKEFVP--QRTCAYISQND 253
T + G G+GKTTL+ +AG D + L G+ + + F+P +R Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRK-GIFLPPEKRRIGYVFQEA 84
Query: 254 LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISR-REKEAGIKPDPEIDAYMKATALAGQK 312
F ++VR + RY M R R E I +
Sbjct: 85 RLFPHLSVRGNL-----------RYGM----KRARPSERRISFER--------------- 114
Query: 313 TSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGL 372
V++LLG+ + G +SGG+K+RV G L+ ++LLMDE L
Sbjct: 115 -------VIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162
Query: 373 DSSTTFQICKYMKQMVHVLEITTI-VS-LLQPAPEAYDLFDNIILLSEGQIVYQGPREKV 430
D ++I Y++++ I + VS LQ E L D +++L +G++ GP +V
Sbjct: 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ---EVLRLADRVVVLEDGRVAAAGPIAEV 219
Query: 431 L 431
Sbjct: 220 W 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 55/243 (22%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKE--FVPQ 243
L +VS + R+ LGP GAGK+T + + G L D +G ++ CG + + Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 244 RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYM 303
R Y+ +++ + +M VRE + F G M
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYG-----------------------------M 105
Query: 304 KATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR--GVSGGQKKRVTTGEMLVGPAK 361
K L + + +++L+GL +Q ++ +S G ++RV + L+ K
Sbjct: 106 KGQLLKQR-----VEEMIELVGL-------RPEQHKKIGQLSKGYRQRVGLAQALIHDPK 153
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVS--LLQPAPEAYDLFDNIILLSEG 419
VL++DE +TGLD + +I +K + + T I+S ++Q E + D +I++++G
Sbjct: 154 VLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIMQ---EVEAICDRVIIINKG 208
Query: 420 QIV 422
+IV
Sbjct: 209 KIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 59/263 (22%), Positives = 102/263 (38%), Gaps = 52/263 (19%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLT-GKIKYCGHEFKEF 240
+ILK V+ VK + ++GP G+GK+TL +AG ++T G I + G + E
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HPSYEVTSGTILFKGQDLLEL 69
Query: 241 VPQ---RTCAYIS-QNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
P R +++ Q ++ E F L + +
Sbjct: 70 EPDERARAGLFLAFQYPEEIPGVSNLE---FLRSALNARRSARGEEPLDLLDFL------ 120
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
+ A L LLG+D + + + G SGG+KKR +M
Sbjct: 121 KLLKA------------------KLALLGMD---EEFLNRSVNEGFSGGEKKRNEILQMA 159
Query: 357 VGPAKVLLMDEISTGLDSSTTFQIC----KYMKQMVHVLEIT---TIVSLLQPAPEAYDL 409
+ K+ ++DEI +GLD + + + L IT +++ ++P
Sbjct: 160 LLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP------- 212
Query: 410 FDNIILLSEGQIVYQGPREKVLE 432
D + +L +G+IV G E E
Sbjct: 213 -DYVHVLLDGRIVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 1e-07
Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 41/275 (14%)
Query: 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLA 915
+ F VNY+ + ++ L D+ + G TAL+G +G+GK+TL+ L
Sbjct: 2 IKFEKVNYTYQPNSPFASRA--------LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLN 53
Query: 916 G--RKTGGYTE-GDISISGYPKNQAT--FARVSGYCEQNDIHSPHVTVYESLLFS--AWL 968
G + T G GDI +S K + + G Q P ++E + A+
Sbjct: 54 GLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQ----FPESQLFEETVLKDVAFG 109
Query: 969 RLSSDIDSKTRKMFVDEVMDLV-------ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVE 1021
+ I + + E +++V E P LS Q +R+ IA
Sbjct: 110 PQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFE-----------LSGGQMRRVAIAGI 158
Query: 1022 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1081
L P ++ +DEPT+GLD +A +M+ + +G+TVV H D+ + D + L+
Sbjct: 159 LAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLL 217
Query: 1082 KRGGQVIYAGPLGRQSQKLVEYFEAVP-GVPRITN 1115
++ G +I G Q+ V++ +A GVP+ T+
Sbjct: 218 EK-GHIISCGTPSDVFQE-VDFLKAHELGVPKATH 250
|
Length = 288 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-07
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 42/221 (19%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPKNQAT 938
+ +L+ ++ PG + AL+G SG+GK+T+ +L Y T G + + G P
Sbjct: 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL----YQPTGGQVLLDGVP----- 544
Query: 939 FARVSGYCEQNDIHSPHVTV----YESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV---- 990
Q D H H V E +LFS +R +I +E+M
Sbjct: 545 -------LVQYDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAAN 595
Query: 991 ------ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
E + VG G LS Q++R+ IA LV P ++ +DE TS LDA
Sbjct: 596 AHDFIMEFPNGYDTEVGEKGSQ-LSGGQKQRIAIARALVRKPRVLILDEATSALDAE--- 651
Query: 1045 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
+ ++ + RTV+ H+ S E D++L++K+G
Sbjct: 652 -CEQLLQESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 53/181 (29%), Positives = 75/181 (41%), Gaps = 32/181 (17%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYTEGDISISGYP 933
L D++ +TAL+G SG GK+TL+ D++ G R TG +I
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79
Query: 934 KNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFV---------- 983
+ R G Q P ++YE++ + R+ + + KT V
Sbjct: 80 ADVVALRRKIGMVFQRPNPFPK-SIYENVAYGP--RIHGEKNKKTLDTIVEKSLKGAALW 136
Query: 984 DEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
DEV D + L LS Q++RL IA L NP +I MDEP S LD A
Sbjct: 137 DEVKDRLHDSAL-----------SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185
Query: 1044 A 1044
A
Sbjct: 186 A 186
|
Length = 253 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 27/190 (14%)
Query: 895 VLTALMGVSGAGKTTLM---DVLAGRKTGGYTEGDISISG----YPK-NQATFARVSGYC 946
+ ALMG SG GK+TL+ + L EG++ + G P + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 947 EQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVEL--------EPLTNA 998
Q PH+T+Y+++ ++L+ + SK E+ + VE + + +
Sbjct: 91 FQYPNPFPHLTIYDNVAIG--VKLNGLVKSK------KELDERVEWALKKAALWDEVKDR 142
Query: 999 MVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
+ P LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 143 LNDYPS--NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEY 199
Query: 1059 TVVCTIHQPS 1068
T+V H P+
Sbjct: 200 TIVLVTHSPA 209
|
Length = 253 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 52/215 (24%), Positives = 85/215 (39%), Gaps = 36/215 (16%)
Query: 867 MPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGD 926
M E+K G ++L ++S R G A+ G SG GK+TL+ ++A + T G
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGT 59
Query: 927 ISISGYPKN----QATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMF 982
+ G + +A +VS YC Q TV ++L+F +R R
Sbjct: 60 LLFEGEDVSTLKPEAYRQQVS-YCAQTPALFGD-TVEDNLIFPWQIR----NRRPDRAAA 113
Query: 983 VDEVMDLVELEPLTNAMVGLPG------VDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036
+D + LP + LS +++R+ + L P I+ +DE TS
Sbjct: 114 LDLLAR-----------FALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITS 162
Query: 1037 GLDARAA----AIVMRTVRNTVDTGRTVVCTIHQP 1067
LD ++ R VR + V+ H
Sbjct: 163 ALDESNKRNIEEMIHRYVR---EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 2e-07
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
+L D+S ++ + +LGP GAGK+TLL LAG L +G+I G + P+
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK 69
Query: 244 ---RTCAYISQ 251
R AY+ Q
Sbjct: 70 ELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 56/246 (22%), Positives = 98/246 (39%), Gaps = 58/246 (23%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF----V 241
L ++ + L+GP GAGK+TLL + + +L +G I+ G + + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDLRGRAI 73
Query: 242 P--QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
P +R + Q+ + V E + F+ GV R EI +R A
Sbjct: 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA-------- 120
Query: 300 DAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGP 359
L+L+GL + +SGG+++RV +V
Sbjct: 121 ---------------------LELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVNS 154
Query: 360 AKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN----IIL 415
+L+ DE + LD TT++I +K+ ++ T +V A A +L D +I
Sbjct: 155 PTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVV-----ATHAKELVDTTRHRVIA 208
Query: 416 LSEGQI 421
L G++
Sbjct: 209 LERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 51/249 (20%), Positives = 100/249 (40%), Gaps = 49/249 (19%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
+ + ++S V P + LLGP GAGKTT + G L+ G+I + G + +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72
Query: 244 RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYM 303
R Y+ + + +MTV + + + G+ + E K + A++
Sbjct: 73 RI-GYLPEERGLYPKMTVEDQLKYLAELKGM------------PKAEIQKK----LQAWL 115
Query: 304 KATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVL 363
+ + G+KT + +S G ++++ ++ ++L
Sbjct: 116 ERLEIVGKKTKKIKE-----------------------LSKGNQQKIQFISAVIHEPELL 152
Query: 364 LMDEISTGLDSSTTFQICKYMKQMVHVL--EITTIVSLLQPAPEAYDLFDNIILLSEGQI 421
++DE +GLD + +K + L E TI+ +L D +++L +GQ
Sbjct: 153 ILDEPFSGLDPVNV----ELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQT 208
Query: 422 VYQGPREKV 430
V G E +
Sbjct: 209 VLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 10/92 (10%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQ 401
+S GQKKRV +LV KVL++DE + GLD +I K + +M L +T I+
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIII---- 197
Query: 402 PAPEAYDLF----DNIILLSEGQIVYQG-PRE 428
A D+ DN+ ++ EG+++ QG P+E
Sbjct: 198 -ATHDIDIVPLYCDNVFVMKEGRVILQGNPKE 228
|
Length = 283 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 64/264 (24%), Positives = 102/264 (38%), Gaps = 80/264 (30%)
Query: 178 SKKRKIQ-ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHE 236
SK+ Q + ++S V + + LLGP GAGK+TLL + G L +G+I + GH
Sbjct: 7 SKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHP 63
Query: 237 FKEFVPQRTCAYISQNDLH-----------FGEMTVRETMDFSGRCLGVGTRYEMLAEIS 285
+ ++ DLH + +T RE + LG+
Sbjct: 64 W------------TRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGL----------- 100
Query: 286 RREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGG 345
PD ID VL ++ L S G
Sbjct: 101 ---------PDSRIDE------------------VLNIVDLTNTGKKKAKQ-----FSLG 128
Query: 346 QKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQ----ICKYMKQMVHVLEITTIVSLLQ 401
K+R+ L+ K+L++DE + GLD + I + +Q + V+ + I+S
Sbjct: 129 MKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS--- 185
Query: 402 PAPEAYDLFDNIILLSEGQIVYQG 425
E L D+I ++SEG + YQG
Sbjct: 186 ---EVQQLADHIGIISEGVLGYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 68/255 (26%), Positives = 110/255 (43%), Gaps = 57/255 (22%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD---LKLTGK-IKYCGHEFKE 239
+ LK ++ + M LLGP GAGK+TL + G L + + G+ IKY E
Sbjct: 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75
Query: 240 FVPQRTCAYISQN-DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
++T + QN D TV E + F LG+ E+ +R KEA
Sbjct: 76 V--RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA------- 121
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVG 358
+KA + G + ++ +SGGQKKRV +L
Sbjct: 122 ----LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILAM 154
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLF----DNII 414
+++++DE ++GLD QI K + + + IT I+S DL D +
Sbjct: 155 KPEIIVLDEPTSGLDPMGASQIMKLLYDL-NKEGITIIIS-----THDVDLVPVYADKVY 208
Query: 415 LLSEGQIVYQG-PRE 428
++S+G+I+ +G P+E
Sbjct: 209 VMSDGKIIKEGTPKE 223
|
Length = 275 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 34/158 (21%)
Query: 896 LTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHS-- 953
LT L+G SG GKTT++ ++AG +T G I + G E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDITHVP-------AENRHVNTVF 92
Query: 954 ------PHVTVYESLLFSAWLRL----SSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLP 1003
PH+TV+E++ F LR+ +++I R V E + +V+LE
Sbjct: 93 QSYALFPHMTVFENVAFG--LRMQKTPAAEI--TPR---VMEALRMVQLEEFAQRKP--- 142
Query: 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 143 --HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 27/172 (15%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYTEGDISISGYPKN 935
++DVS F +TA++G SG GK+T++ + + R TG D I +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 936 QATFARVSGYCEQNDIHSPHVTVYESLLFSAWL-----RLSSD--IDSKTRKMFV-DEVM 987
+ R G Q P +++Y++++ L R +D ++S +++ + DEV
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK 139
Query: 988 DLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
D ++ +NAM LS Q++RL IA + P +I MDEP S LD
Sbjct: 140 DRLK----SNAME-------LSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA- 940
++L V+ +TALMG SG+GK+TL+ V R Y E +S Y Q F
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRLIELYPEARVSGEVYLDGQDIFKM 75
Query: 941 -------RVSGYCE-QNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMF--VDEVMDLV 990
RV + N I P+++++E++ L+L+ + SK +++ V ++
Sbjct: 76 DVIELRRRVQMVFQIPNPI--PNLSIFENVALG--LKLNRLVKSK-KELQERVRWALEKA 130
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
+L + P LS Q++RL IA L P ++ DEPT+ LD A
Sbjct: 131 QLWDEVKDRLDAPA-GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA 183
|
Length = 250 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 58/276 (21%), Positives = 115/276 (41%), Gaps = 42/276 (15%)
Query: 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLL---MALAGKLDDDLKLTGKIKYCGHEFKE 239
+ +L ++ V L+GP G+GK+T+L M L + +++ G+ Y
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLY------- 65
Query: 240 FVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
+P R + ++ H +M + M F + + + +
Sbjct: 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQS--------FNLFPHKT------------VL 105
Query: 300 DAYMKATALA-GQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVG 358
D +A L G + A ++LL + AD D M +SGGQ++RV L
Sbjct: 106 DNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKA--DHMPAQLSGGQQQRVAIARALAM 163
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418
KV+L DE+++ LD ++ ++++ ++T ++ + A + D + +
Sbjct: 164 RPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRVCFFDK 222
Query: 419 GQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEV 454
G+IV QG +++ F+ P + +FL +V
Sbjct: 223 GRIVEQGKPDEI--------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-07
Identities = 55/211 (26%), Positives = 97/211 (45%), Gaps = 18/211 (8%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGY----PKN 935
R +L +S G A++G SGAGK+T++ +L R G I+I G
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF-RFYDV-NSGSITIDGQDIRDVT- 331
Query: 936 QATFARVSGYCEQNDIHSPHVTVYESLLFS-AWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
Q + R G Q+ V +++ ++ + R + + ++ D ++ P
Sbjct: 332 QQSLRRAIGIVPQD-----TVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLP 386
Query: 995 -LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
+ VG G+ LS +++R+ IA ++ NP I+ +DE TS LD + +R
Sbjct: 387 EGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE- 444
Query: 1054 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
V GRT + H+ S I +A DE++++ G
Sbjct: 445 VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 63/208 (30%), Positives = 90/208 (43%), Gaps = 40/208 (19%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYTEGDISISGY----P 933
L VS F P +TAL+G SG+GK+TL M+ L T G I +G+ P
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 934 KNQATFARVS-GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFV--------- 983
+ R G Q P +++YE++++ LRL D + V
Sbjct: 78 RTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRLKGIKDKQVLDEAVEKSLKGASI 134
Query: 984 -DEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
DEV D + L GLS Q++R+ IA L +P II +DEPTS LD +
Sbjct: 135 WDEVKDRLHDSAL-----------GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPIS 183
Query: 1043 AAIVMRTVRNTVD--TGRTVVCTIHQPS 1068
A + T+ D T V ++ Q S
Sbjct: 184 AGKIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-07
Identities = 60/220 (27%), Positives = 93/220 (42%), Gaps = 25/220 (11%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKNQATFAR 941
L +V+ RP + ALMG +GAGK+TL+ L G +K G I G + +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQGKEIDFKS--- 66
Query: 942 VSGYCEQNDIHSPH--------VTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE 993
S +N I H +V +++ + +D KM+ D EL+
Sbjct: 67 -SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQD--KMYRDTKAIFDELD 123
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
+ V LS Q + + IA N I+ MDEPTS L + + +R
Sbjct: 124 IDIDPRAK---VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKL 180
Query: 1054 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093
+ G +V H+ +IF+ DE+ ++ R GQ I PL
Sbjct: 181 KERGCGIVYISHKME-EIFQLCDEITIL-RDGQWIATQPL 218
|
Length = 491 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 71/269 (26%), Positives = 109/269 (40%), Gaps = 53/269 (19%)
Query: 180 KRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKL-----DDDLKLTGKIKYCG 234
+R IL+D+S ++P R+T LLG GAGK+TLL ALAG L ++TG + G
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Query: 235 HEFKEFVPQRTC---AYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEA 291
R A + Q + FS R + + RY +RR
Sbjct: 71 EPLAAIDAPRLARLRAVLPQ--------AAQPAFAFSAREIVLLGRYPH----ARRAGAL 118
Query: 292 GIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVT 351
+ D EI +A ALAG L+G D+ +SGG+ RV
Sbjct: 119 THR-DGEIAW--QALALAGATA---------LVGRDVTT-----------LSGGELARVQ 155
Query: 352 TGEML---------VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQP 402
+L P + LL+DE + LD + ++ ++++ + + + P
Sbjct: 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP 215
Query: 403 APEAYDLFDNIILLSEGQIVYQGPREKVL 431
A D I +L++G IV G VL
Sbjct: 216 NLAARHA-DRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 54/216 (25%), Positives = 85/216 (39%), Gaps = 66/216 (30%)
Query: 865 VDMPAEMKAQGIE--EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK---T 919
+ P +M+A+G+ Q L D+S F +TAL+G SG GK+T + L
Sbjct: 1 MASPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIP 60
Query: 920 GGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHV---------------------TV 958
G EG+I + G +I+ PHV ++
Sbjct: 61 GARVEGEILLDG-----------------ENIYDPHVDVVELRRRVGMVFQKPNPFPKSI 103
Query: 959 YESLLFSAWLRLS-----SDIDSKTRKMFV-----DEVMDLVELEPLTNAMVGLPGVDGL 1008
+E++ + LR++ + + + + DEV D + L GL
Sbjct: 104 FENVAYG--LRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESAL-----------GL 150
Query: 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
S Q++RL IA L P ++ MDEP S LD A
Sbjct: 151 SGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 55/221 (24%), Positives = 83/221 (37%), Gaps = 49/221 (22%)
Query: 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF-- 240
+ L DVS ++ L GP GAGKTTLL L G L G+++ G +
Sbjct: 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRG 71
Query: 241 --VPQ--RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
+P R + Q+ + TV E + G R EI RR A
Sbjct: 72 RQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGAA----- 121
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
L+ +GL+ AD +SGG+++RV +
Sbjct: 122 ------------------------LRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAI 152
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV 397
V +LL DE + LD + +I +K+ ++ T IV
Sbjct: 153 VNSPPLLLADEPTGNLDPDLSERILDLLKR-LNKRGTTVIV 192
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 55/267 (20%), Positives = 109/267 (40%), Gaps = 55/267 (20%)
Query: 167 ENVLGSLR-ILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLK 225
++GSL+ + K R+++ LK +S ++ + +GP GAGKTT L L+G L
Sbjct: 17 PGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT-- 74
Query: 226 LTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEI 284
+G+++ G VP +R ++ + + FG+ + + + L V + +LA I
Sbjct: 75 -SGEVRVAG-----LVPWKRRKKFLRRIGVVFGQ---KTQLWWD---LPVIDSFYLLAAI 122
Query: 285 SRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSG 344
K E+ + L D R +S
Sbjct: 123 YDLPPARFKKRLDELSELLDLEELL--------------------------DTPVRQLSL 156
Query: 345 GQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAP 404
GQ+ R L+ ++L +DE + GLD I ++K+ T +++
Sbjct: 157 GQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT------ 210
Query: 405 EAYDLFD------NIILLSEGQIVYQG 425
++ + D ++++ +G+++Y G
Sbjct: 211 -SHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 3e-07
Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 45/266 (16%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV 241
K + ++++ + T ++GP G GK+TLL L+ + G + G + +
Sbjct: 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYA 75
Query: 242 PQ---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
+ R ++QN G++TV+E L RY +R KE +
Sbjct: 76 SKEVARRIGLLAQNATTPGDITVQE--------LVARGRYPHQPLFTRWRKE----DEEA 123
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVG 358
+ M+AT + T LA V DT+ SGGQ++R +L
Sbjct: 124 VTKAMQATGI----THLADQSV----------DTL---------SGGQRQRAWIAMVLAQ 160
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418
++L+DE +T LD S + + + ++ + + T+ ++L +A ++I L E
Sbjct: 161 ETAIMLLDEPTTWLDISHQIDLLELLSEL-NREKGYTLAAVLHDLNQACRYASHLIALRE 219
Query: 419 GQIVYQG-PREKVL-EFFEYM-GFKC 441
G+IV QG P+E V E E + G +C
Sbjct: 220 GKIVAQGAPKEIVTAELIERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 66/229 (28%), Positives = 99/229 (43%), Gaps = 25/229 (10%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT---FA 940
L+DVS G A++G +G+GK+TL +L G G I++ G ++ T
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLSEETVWDVR 80
Query: 941 RVSGYCEQN-DIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM 999
R G QN D TV + + F + R VD+ + V +E N
Sbjct: 81 RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVER---VDQALRQVGMEDFLNRE 137
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR- 1058
P LS Q++R+ IA L P II +DE TS LD R V+ TVR +
Sbjct: 138 ---PH--RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGI 192
Query: 1059 TVVCTIHQPSIDIFEAF--DELLLMKRGGQVIYAGP---LGRQSQKLVE 1102
TV+ H D+ EA D +++M G+++ G + + L E
Sbjct: 193 TVLSITH----DLDEAAQADRVIVM-NKGEILEEGTPEEIFKSGHMLQE 236
|
Length = 279 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 47/194 (24%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
IL ++S ++ L+ GP G GK+TLL +A + +G + + G + P+
Sbjct: 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEI 78
Query: 245 ---TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
+Y +Q FG+ TV + + F +++ +PDP I
Sbjct: 79 YRQQVSYCAQTPTLFGD-TVYDNLIFP---------WQI----------RNQQPDPAI-- 116
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
D L+ L DT++ + +SGG+K+R++ L K
Sbjct: 117 -------------FLDD--LERFALP---DTIL-TKNIAELSGGEKQRISLIRNLQFMPK 157
Query: 362 VLLMDEISTGLDSS 375
VLL+DEI++ LD S
Sbjct: 158 VLLLDEITSALDES 171
|
Length = 225 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 3e-07
Identities = 69/238 (28%), Positives = 102/238 (42%), Gaps = 31/238 (13%)
Query: 886 DVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ-ATFARVSG 944
DVS G + AL+G SG GK+TL+ +LAG + T G I + G + + R
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDLSHVPPYQRPIN 94
Query: 945 YCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTR-KMFVDEVMDLVELEPLTNAMVGLP 1003
Q+ PH+TV +++ F L D K V+E++ LV ++ P
Sbjct: 95 MMFQSYALFPHMTVEQNIAFG----LKQDKLPKAEIASRVNEMLGLVHMQEFAKRK---P 147
Query: 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVC 1062
LS QR+R+ +A L P ++ +DEP LD + + V + ++ G T V
Sbjct: 148 --HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205
Query: 1063 TIHQPSIDIFEAFD---ELLLMKRGGQV-------IYAGPLGRQSQKL---VEYFEAV 1107
H D EA + +M RG V IY P R S + V FE V
Sbjct: 206 VTH----DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGV 259
|
Length = 377 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 47/182 (25%), Positives = 67/182 (36%), Gaps = 47/182 (25%)
Query: 193 VKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQN 252
V L+ G GAGKTTLL LAG L + +G+I+ G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLG-- 88
Query: 253 DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD-PEIDAYMKATALAGQ 311
H G+K D ++ L G+
Sbjct: 89 --HLP----------------------------------GLKADLSTLENLHFLCGLHGR 112
Query: 312 KTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTG 371
+ L ++GL DT+V R +S GQKKR+ + + PA + L+DE
Sbjct: 113 RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167
Query: 372 LD 373
LD
Sbjct: 168 LD 169
|
Length = 214 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 3e-07
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1067
LS +R+ + IA L N ++ +DEPT+ L + + +R G V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 1068 SIDIFEAFDELLLMKRG 1084
++FE D + +++ G
Sbjct: 143 D-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 48/173 (27%)
Query: 203 GPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKE--FVPQRTCAYISQNDLHFGEMT 260
GP G GKTTLL LAG L D +G++++ G E P R Y+ E++
Sbjct: 33 GPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89
Query: 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYV 320
E + F A I +
Sbjct: 90 ALENLHF-------------WAAIHGGA-------------------------QRTIEDA 111
Query: 321 LKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLD 373
L +GL D +S GQ++R+ + + A + ++DE +T LD
Sbjct: 112 LAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-07
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGR------KTGGYTEGDISISGYPKN--QATFARVS 943
RPG + ++G +G GK+T + +LAG + D I + Q F ++
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157
Query: 944 GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKT-RKMFVDEVMDLVELEPLTNAMVGL 1002
+ ++ + H Y L+ ++ K + DEV++ + LE + +
Sbjct: 158 ----EGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDR---- 209
Query: 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1062
V LS + +R+ IA L+ + + F DEP+S LD R R +R + G+ V+
Sbjct: 210 -DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIV 268
Query: 1063 TIH 1065
H
Sbjct: 269 VEH 271
|
Length = 591 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 55/277 (19%)
Query: 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDL---KLTGKIKYCGHEFKE 239
+ L +S + +T L+GP G GK+T L L +++DD+ K+TG+IK+ G
Sbjct: 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNI-- 73
Query: 240 FVPQRTCAYISQNDL-----HFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIK 294
Y S+ DL G M ++ F + + ++ K AG+K
Sbjct: 74 --------YGSKMDLVELRKEVG-MVFQQPTPFP---------FSVYDNVAYGLKIAGVK 115
Query: 295 PDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGE 354
ID ++ SL + K ++ D+ + SGGQ++R+
Sbjct: 116 DKELIDQRVEE--------SLKQAAIWKETKDNL-------DRNAQAFSGGQQQRICIAR 160
Query: 355 MLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNII 414
L KV+L+DE ++ LD ++ +I + + ++ H + LQ +A + D
Sbjct: 161 ALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQ---QAGRISDQTA 217
Query: 415 LLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
L G ++ GP E++ F P ++ +D+L
Sbjct: 218 FLMNGDLIEAGPTEEM--------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 5e-07
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 19/172 (11%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYTEGDISISG--- 931
Q L+ ++ +TAL+G SG GK+TL+ D++ G K G +++ G
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDI 72
Query: 932 YPKNQATFARVS-GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV 990
Y R+ G Q P +++YE++ + LR D K V+ +
Sbjct: 73 YGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGA 129
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
L + GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 130 ALWDEVKDRLKSHAF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 5e-07
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 31/154 (20%)
Query: 897 TALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGY-----------PKNQATFARVSGY 945
TA+ G SGAGKT+L++ ++G +G I ++G P + R GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEK----RRIGY 80
Query: 946 CEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGV 1005
Q+ PH V +L + + F D+++ L+ +EPL + PG
Sbjct: 81 VFQDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPLLDR---YPG- 127
Query: 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 -SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 5e-07
Identities = 56/227 (24%), Positives = 99/227 (43%), Gaps = 28/227 (12%)
Query: 883 LLRDVSGV---FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEG-------DISIS 930
+++ V V + G + ++G SGAGKTTL ++AG T G D++
Sbjct: 296 VVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355
Query: 931 GYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV 990
G P + R G Q PH TV ++L + L L ++ ++ + + +++
Sbjct: 356 G-PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL-ARMKAVITLKMVGFD 413
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
E E + P D LS +R R+ +A L+ P I+ +DEPT +D I V
Sbjct: 414 E-EKAEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDV 466
Query: 1051 RNTV-----DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
+++ + +T + H + + D LM R G+++ G
Sbjct: 467 THSILKAREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 5e-07
Identities = 67/297 (22%), Positives = 120/297 (40%), Gaps = 27/297 (9%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKY-------CGH- 235
++LK++S ++ + +LG GAGK+ L+ L G +D +G+I Y CG+
Sbjct: 14 EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG-MDQYEPTSGRIIYHVALCEKCGYV 72
Query: 236 EFKEFV--PQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGI 293
E V P C G E +DF + R I + A
Sbjct: 73 ERPSKVGEPCPVC----------GGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALY 122
Query: 294 KPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTG 353
D +D ++A G + A + L+ + + + + R +SGG+K+RV
Sbjct: 123 GDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRIT--HIARDLSGGEKQRVVLA 180
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413
L + L DE + LD T + +++ V I+ +++ P DL D
Sbjct: 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIE-DLSDKA 239
Query: 414 ILLSEGQIVYQG-PREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQ 469
I L G+I +G P E V F E G +++ + + + ++ + + D+
Sbjct: 240 IWLENGEIKEEGTPDEVVAVFME--GVSEVEKECEVEVGEPIIKVRNVSKRYISVDR 294
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (125), Expect = 5e-07
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 15/194 (7%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG---------YP 933
+L+D++ + +MG SG+GK+TL+ VL R Y + I + G +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIY-DSKIKVDGKVLYFGKDIFQ 82
Query: 934 KNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE 993
+ + G Q PH+++Y+++ + L+ + + K V+E + V L
Sbjct: 83 IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLW 140
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
+ P LS Q++RLTIA L P ++ MDEPTS +D + + + +
Sbjct: 141 KEVYDRLNSPASQ-LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI-TE 198
Query: 1054 VDTGRTVVCTIHQP 1067
+ +V H P
Sbjct: 199 LKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 53/248 (21%), Positives = 102/248 (41%), Gaps = 58/248 (23%)
Query: 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFK 238
K IL D++ ++ +M ++G G+GK+TLL + G L+ G++ G E
Sbjct: 7 KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII-GLLEKFDS--GQVYLNGQETP 63
Query: 239 EFVPQR-------TCAYISQNDLHFGEM---TVRETMDFSGRCLGVGTRYEMLAEISRRE 288
++ Y+ QN F + TV E +D +G +Y+ ++S++E
Sbjct: 64 PLNSKKASKFRREKLGYLFQN---FALIENETVEENLD-------LGLKYK---KLSKKE 110
Query: 289 KEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKK 348
K K L+ +GL++ + + +SGG+++
Sbjct: 111 KREKKK------------------------EALEKVGLNLKLKQKIYE-----LSGGEQQ 141
Query: 349 RVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYD 408
RV ++ P ++L DE + LD ++ + ++ E TI+ ++ PE
Sbjct: 142 RVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELND--EGKTII-IVTHDPEVAK 198
Query: 409 LFDNIILL 416
D +I L
Sbjct: 199 QADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 56/270 (20%), Positives = 97/270 (35%), Gaps = 62/270 (22%)
Query: 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHE 236
K L +VS ++ ++G G+GK+TL LAG +G I G
Sbjct: 14 GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKP 70
Query: 237 F--KEFVPQRTCA--YISQ---NDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREK 289
K+ + Q + L+ TV + R G+ + +AE+
Sbjct: 71 LAPKKRAKAFYRPVQMVFQDPYSSLN-PRRTVGRILSEPLRPHGLSKSQQRIAELL---D 126
Query: 290 EAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKR 349
+ G+ P S +L SGGQ++R
Sbjct: 127 QVGLPP------------------SFLDRRPHEL-------------------SGGQRQR 149
Query: 350 VTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV-----SLLQPAP 404
+ L+ K+L++DE ++ LD S QI + ++ +T + +L+
Sbjct: 150 IAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV---- 205
Query: 405 EAYDLFDNIILLSEGQIVYQGPREKVLEFF 434
+ D I ++ GQIV GP E++L
Sbjct: 206 --EHMCDRIAVMDNGQIVEIGPTEELLSHP 233
|
Length = 252 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 6e-07
Identities = 59/241 (24%), Positives = 97/241 (40%), Gaps = 28/241 (11%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYT------EGDISISGYPKNQ 936
+LRD+S PG +TAL+G +GAGK+TL+ LAG TGG GD++++G P
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 937 ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAW--LRLSSDIDSKTRKMFVDEVMDLVE 991
AR+ Q + + E +L + R + + + ++ + + L
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEI-AWQALALAG 134
Query: 992 LEPLTNAMVGLPGVDGLSTEQRKRLTIAVEL---------VANPSIIFMDEPTSGLDARA 1042
L V LS + R+ A L P + +DEPT+ LD
Sbjct: 135 ATALVGR-----DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAH 189
Query: 1043 AAIVMRTVRNTVDTGRTVVCTI-HQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLV 1101
++ TVR V I H P++ A D + ++ G V + P + +
Sbjct: 190 QHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA-DRIAMLADGAIVAHGAPADVLTPAHI 248
Query: 1102 E 1102
Sbjct: 249 A 249
|
Length = 272 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 11/162 (6%)
Query: 886 DVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYTEGDISISG---YPK--NQA 937
DV+ P +TA +G SG GK+T++ L G EG++ + G Y +
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 938 TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTN 997
R G Q P +++ ++++ A L+L+ + K V++ + L
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLWNEVK 139
Query: 998 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+ PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 140 DRLDKPGG-GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 6e-07
Identities = 38/135 (28%), Positives = 74/135 (54%), Gaps = 17/135 (12%)
Query: 342 VSGGQKKRVT-TGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLL 400
+SGGQK+RV G + V P K++++DE ++ LD + QI K ++++ + T++S+
Sbjct: 144 LSGGQKQRVAIAGILAVEP-KIIILDESTSMLDPAGKEQILKLIRKLKKKNNL-TVISIT 201
Query: 401 QPAPEAYDLFDNIILLSEGQIVYQG-PRE--KVLEFFEYMGFKCP---------DRKGVA 448
EA ++ D +++L +G+++ QG P E +E + +G P KG++
Sbjct: 202 HDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGIS 260
Query: 449 DFLQEVTSKKDQEQY 463
QE+ +++ QY
Sbjct: 261 -VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 6e-07
Identities = 65/261 (24%), Positives = 103/261 (39%), Gaps = 67/261 (25%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF---V 241
IL D+S +K + T ++G G+GK+TL L G +G+I G K+
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHT 545
Query: 242 PQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
++ Y+ Q E FSG L E L G K + D
Sbjct: 546 LRQFINYLPQ-----------EPYIFSGSIL------ENLL--------LGAKENVSQDE 580
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRG-----------VSGGQKKRV 350
A +A K DI + M G +SGGQK+R+
Sbjct: 581 IWAACEIAEIKD-------------DI-------ENMPLGYQTELSEEGSSISGGQKQRI 620
Query: 351 TTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLF 410
L+ +KVL++DE ++ LD+ T +I + + I + L A ++
Sbjct: 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK-TIIFVAHRLSVAKQS---- 675
Query: 411 DNIILLSEGQIVYQGPREKVL 431
D II+L G+I+ QG +++L
Sbjct: 676 DKIIVLDHGKIIEQGSHDELL 696
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 7e-07
Identities = 40/195 (20%), Positives = 65/195 (33%), Gaps = 52/195 (26%)
Query: 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHE 236
+ L+D+S V+ L+GP G GK+TLL +AG +G++ G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67
Query: 237 FKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
P Y+ Q D +TV + + GV + E
Sbjct: 68 VTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGV----------PKAEARE----- 110
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRV----TT 352
+ ++ L+G + +SGG ++RV
Sbjct: 111 -RAEELLELVGLSG-----------------------FENAYPHQLSGGMRQRVALARA- 145
Query: 353 GEMLVGPAKVLLMDE 367
+ V P VLL+DE
Sbjct: 146 --LAVDP-DVLLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 331 DTMVGDQMRRGV--SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMV 388
DT+VG+ RG+ SGG+K+RV ++ +LL+DE ++ LD+ T +I +
Sbjct: 128 DTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI---QAALR 181
Query: 389 HVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLE 432
V + T + + + D II+L +G+IV +G E++L
Sbjct: 182 DVSKGRTTIVIAHRLSTIVNA-DKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 9e-07
Identities = 50/244 (20%), Positives = 98/244 (40%), Gaps = 49/244 (20%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
L D+S V+ + LLGP GAGKTT + + G + D +G++ + G + +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPL-DIAAR 69
Query: 244 RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYM 303
Y+ + + +M V + + + + G+ E RR
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKE-----EARRR---------------- 108
Query: 304 KATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVL 363
D L+ L L A+ V +++ S G +++V ++ ++L
Sbjct: 109 -------------IDEWLERLELSEYANKRV-EEL----SKGNQQKVQFIAAVIHDPELL 150
Query: 364 LMDEISTGLDSSTTFQICKYMKQMVHVL--EITTIVSLLQPAPEAYDLFDNIILLSEGQI 421
++DE +GLD + +K ++ L T++ +L D ++LL++G+
Sbjct: 151 ILDEPFSGLDPVNV----ELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRA 206
Query: 422 VYQG 425
V G
Sbjct: 207 VLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 43/234 (18%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRT 245
LK V+ ++ L+G G GK+TLL ++G +G + G + E P R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL---AQPTSGGVILEGKQITEPGPDRM 57
Query: 246 CAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKA 305
+ QN +TVRE + + + L ++S+ E+ A +
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDRV--------LPDLSKSERRAIV------------ 95
Query: 306 TALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLM 365
+ + L+GL AD G +SGG K+RV L KVLL+
Sbjct: 96 ------------EEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 366 DEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419
DE LD+ T + + + Q+ +T ++ + EA L D +++L+ G
Sbjct: 139 DEPFGALDALTRGNLQEELMQIWEEHRVTVLM-VTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 58/256 (22%), Positives = 109/256 (42%), Gaps = 43/256 (16%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAG--KLDDDLKLTGKIKYCGHEF--KE 239
++K V + + + L+GP G GK+TLL +L+++ ++ G+++ G +
Sbjct: 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77
Query: 240 FVP---QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
P +R + Q F +T+ + + +G + L + S++E D
Sbjct: 78 VDPIEVRREVGMVFQYPNPFPHLTIYDN-------VAIGVKLNGLVK-SKKEL------D 123
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
++ +K AL + DY L SGGQ++R+ L
Sbjct: 124 ERVEWALKKAALWDEVKDRLNDYPSNL-------------------SGGQRQRLVIARAL 164
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416
K+LLMDE + +D T +I + + ++ E T ++ PA +A + D + L
Sbjct: 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPA-QAARVSDYVAFL 221
Query: 417 SEGQIVYQGPREKVLE 432
G+++ GP KV E
Sbjct: 222 YLGKLIEVGPTRKVFE 237
|
Length = 253 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 1e-06
Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 27/158 (17%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATFARVSGYCEQND 950
G TA++G +G GK+TL+ L+ T G + + G AR G QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKEVARRIGLLAQNA 90
Query: 951 IHSPHVTVYESL---------LFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001
+TV E + LF+ W + D ++ T+ M + L
Sbjct: 91 TTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHL-----------A 137
Query: 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
VD LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 138 DQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 1e-06
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP 933
L VS R G + AL+G +GAGK+TLM +L+G G+I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSG--LYKPDSGEILVDGKE 63
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-06
Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 28/213 (13%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPKNQATFAR 941
L+D+S G ++G +GAGK+TL+ ++AG Y T G + ++G +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI----YKPTSGKVKVTG---------K 89
Query: 942 VSGYCEQNDIHSPHVTVYESLLFSA-WLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAM 999
V+ E P +T E++ L L+ +ID K VDE+++ EL +
Sbjct: 90 VAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEK-----VDEIIEFAELGDFID-- 142
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
P V S+ RL +V P I+ +DE + DA + + V+ +T
Sbjct: 143 --QP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKT 199
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
+V H I + D + ++ G + P
Sbjct: 200 IVLVSHDLGA-IKQYCDRAIWLEHGQIRMEGSP 231
|
Length = 249 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 867 MPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGD 926
E K ++L+D+S F G + ++G SGAGK+TL+ ++ + TEG
Sbjct: 2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGS 59
Query: 927 ISISGYP-KNQAT--FARVSGYCEQNDIHSPHV---TVYESLLFSAWLRLSSDIDSKTRK 980
I I G K R G Q PH+ TV +++ + L+ ++D
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQ----PHLFEGTVKDNIEYGPMLKGEKNVD----- 110
Query: 981 MFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
V+ + +V L N V LS + +R++IA L NP ++ +DEPTS LD
Sbjct: 111 --VEYYLSIVGL----NKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP 164
Query: 1041 RAAAIVMRTVRN 1052
+ I+ +
Sbjct: 165 TSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 62/226 (27%), Positives = 93/226 (41%), Gaps = 29/226 (12%)
Query: 871 MKAQGIEED-RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISI 929
M+ + RL L S R G + L+G +GAGK+TL+ +AG G G I
Sbjct: 1 MQLNDVAVSTRLGPL---SAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQF 54
Query: 930 SGYP---KNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEV 986
+G P + A AR Y Q + V++ L L ++ ++EV
Sbjct: 55 AGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEV 110
Query: 987 MDLVELEPLTNAMVG-LPGVDGLSTE-QRKRLTIAVELVANPSI------IFMDEPTSGL 1038
+ + L+ V L G E QR RL AV L P I + +DEP + L
Sbjct: 111 AEALGLDDKLGRSVNQLSG-----GEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSL 164
Query: 1039 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
D A + R + G VV + H + + A D + L+K+G
Sbjct: 165 DVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHA-DRVWLLKQG 209
|
Length = 248 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 1e-06
Identities = 65/238 (27%), Positives = 107/238 (44%), Gaps = 36/238 (15%)
Query: 872 KAQGIEEDRLQL-LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISIS 930
K Q +E+ L L ++D S G + +MG+SG+GK+T++ +L + T G + I
Sbjct: 31 KEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLL--NRLIEPTRGQVLID 88
Query: 931 GYPKNQATFARVS-------GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFV 983
G + + A + Q+ PH+TV ++ F L + I+++ R+
Sbjct: 89 GVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMEL---AGINAEERR--- 142
Query: 984 DEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
++ +D + L N P D LS R+R+ +A L NP I+ MDE S LD
Sbjct: 143 EKALDALRQVGLENYAHSYP--DELSGGMRQRVGLARALAINPDILLMDEAFSALDP--- 197
Query: 1044 AIVMRT------VRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGQVIYAGP 1092
++RT V+ RT+V H D+ EA D + +M+ G V P
Sbjct: 198 --LIRTEMQDELVKLQAKHQRTIVFISH----DLDEAMRIGDRIAIMQNGEVVQVGTP 249
|
Length = 400 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 63/252 (25%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ-- 243
L ++ V+P L+GP GAGK+TL L D +G+I G + ++ P
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAEL 412
Query: 244 -RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAY 302
A + Q+ + F +V E + + GR PD D
Sbjct: 413 RARMALVPQDPVLFAA-SVMENIRY-GR------------------------PDAT-DEE 445
Query: 303 MKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV--SGGQKKRVTTGEMLVGPA 360
++A A A A +++ L DT +G+ RGV SGGQ++R+ ++ A
Sbjct: 446 VEAAARAAH----AHEFISAL---PEGYDTYLGE---RGVTLSGGQRQRIAIARAILKDA 495
Query: 361 KVLLMDEISTGLDSSTTFQICKYMKQMVHVL--EITTIV-----SLLQPAPEAYDLFDNI 413
+LL+DE ++ LD+ + + +Q + L TT++ + + A D I
Sbjct: 496 PILLLDEATSALDAESEQLV----QQALETLMKGRTTLIIAHRLATVLKA-------DRI 544
Query: 414 ILLSEGQIVYQG 425
+++ +G+IV QG
Sbjct: 545 VVMDQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-06
Identities = 64/254 (25%), Positives = 111/254 (43%), Gaps = 51/254 (20%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
++L +++ +KP ++GP G+GK+TL KL ++ + PQ
Sbjct: 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLT-----------KLLQRL---------YTPQ 510
Query: 244 RTCAYISQNDLHFGE-MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAY 302
+ DL + +R R +GV + +L S R+ A P +
Sbjct: 511 HGQVLVDGVDLAIADPAWLR-------RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHV 563
Query: 303 MKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKV 362
+ A LAG A D++ L +T VG++ +SGGQ++R+ LVG ++
Sbjct: 564 IHAAKLAG-----AHDFIS---ELPQGYNTEVGEK-GANLSGGQRQRIAIARALVGNPRI 614
Query: 363 LLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDL-----FDNIILLS 417
L+ DE ++ LD + I M+ M + T++ + A+ L D II+L
Sbjct: 615 LIFDEATSALDYESEALI---MRNMREICRGRTVIII------AHRLSTVRACDRIIVLE 665
Query: 418 EGQIVYQGPREKVL 431
+GQI G E++L
Sbjct: 666 KGQIAESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 2e-06
Identities = 70/281 (24%), Positives = 113/281 (40%), Gaps = 79/281 (28%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
+LK ++ S +T L+G G GK+TL M L+G L PQ
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--------------------PQ 54
Query: 244 RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYM 303
+ A + Q + +D+S R L ++ R++ A + DPE +
Sbjct: 55 KG-AVLWQG----------KPLDYSKRGL-----------LALRQQVATVFQDPEQQIFY 92
Query: 304 KATALAGQKTSLATDYVLKLLGLDICAD----------TMVGDQMRRG-----VSGGQKK 348
T + +D L L + T+V Q R +S GQKK
Sbjct: 93 ---------TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKK 143
Query: 349 RVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMV----HVLEITTIVSLLQPAP 404
RV LV A+ LL+DE + GLD + Q+ ++++V HV+ + + L+
Sbjct: 144 RVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI---- 199
Query: 405 EAYDLFDNIILLSEGQIVYQGPREKVL---EFFEYMGFKCP 442
Y++ D + +L +GQI+ G +V E E G P
Sbjct: 200 --YEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 60/274 (21%), Positives = 117/274 (42%), Gaps = 54/274 (19%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDD---DLKLTGKIKYCGHEF--KEF 240
+KDVS + +T ++GP G GK+T+L ++ ++ D ++TGKI + +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSI-NRMHDLVPSARVTGKILLDDTDIYDRGV 78
Query: 241 VP---QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
P +R + Q F M++ + V Y++ ++R E D
Sbjct: 79 DPVSIRRRVGMVFQKPNPFPAMSIYDN---------VIAGYKLNGRVNRSEA------DE 123
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLV 357
+++ +K AL D D + + M +SGGQ++R+ +
Sbjct: 124 IVESSLKRVAL-----------------WDEVKDRLKSNAME--LSGGQQQRLCIARTIA 164
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417
+V+LMDE ++ LD +T +I + ++++ E TI+ + +A + D
Sbjct: 165 VKPEVILMDEPASALDPISTLKIEELIEELK---EKYTIIIVTHNMQQAARVSDYTAFFY 221
Query: 418 EGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
G +V G +K+ F P++K D++
Sbjct: 222 MGDLVECGETKKI--------FTTPEKKQTEDYI 247
|
Length = 252 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 21/205 (10%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
LL +++ RPG + G SGAGKT+L+ LAG + G I P + A
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL--- 459
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGL 1002
+ Q + P T+ E+L + + D + V+ V L L +
Sbjct: 460 --FLPQRP-YLPQGTLREAL---CYPNAAPDFSDAE----LVAVLHKVGLGDLAERLDEE 509
Query: 1003 -PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
LS +++RL A L+ P +F+DE TS LD + + ++ + TV+
Sbjct: 510 DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVI 568
Query: 1062 CTIHQPSIDIFEAFDELLLMKRGGQ 1086
H+P++ F + +L L+ G
Sbjct: 569 SVGHRPTLWNFHS-RQLELLDDAGG 592
|
Length = 604 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 28/200 (14%)
Query: 876 IEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP-- 933
++R+ L +S G L + G +GAGKT+L+ +LAG G++ G P
Sbjct: 10 ERDERI-LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAG--LARPDAGEVLWQGEPIR 66
Query: 934 KNQATFARVSGYC-EQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVEL 992
+ + + + Y Q I +T E+L F RL D + + + +
Sbjct: 67 RQRDEYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDD-------EALWEAL-- 114
Query: 993 EPLTNAMVGLPG-----VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
A VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 115 -----AQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLE 169
Query: 1048 RTVRNTVDTGRTVVCTIHQP 1067
+ + G V+ T HQ
Sbjct: 170 ALLAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 2e-06
Identities = 26/185 (14%), Positives = 64/185 (34%), Gaps = 3/185 (1%)
Query: 1209 IVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRE 1268
I+ GLLFGL G+ + + V + + + R +
Sbjct: 60 IIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGT 119
Query: 1269 RAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSM---MGFAWKAKRFFWFLYMVMMS 1325
+ S ++ F + + Y+ +++ L+L + +G + L ++++
Sbjct: 120 LERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLL 179
Query: 1326 FMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAW 1385
L ++ Q + + + SG P +P W + +++P+ +
Sbjct: 180 LATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTY 239
Query: 1386 TLYGL 1390
+ L
Sbjct: 240 AIDAL 244
|
Length = 286 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 67/272 (24%), Positives = 103/272 (37%), Gaps = 69/272 (25%)
Query: 167 ENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKL 226
E V+ S + + KIQ L +VS + + L+G GAGKTTLL L G D
Sbjct: 2 EKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG---DPRAT 58
Query: 227 TGKIKYCGHEFKEFVPQR----TCAYISQNDLHFGEMTVRETMDFSG----------RCL 272
+G+I + G + ++ + A + + F MTV E + G R
Sbjct: 59 SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK 118
Query: 273 GVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADT 332
V + L E RR + AG T
Sbjct: 119 WVYELFPRLHE--RRIQRAG---------------------------------------T 137
Query: 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLE 392
M SGG+++ + G L+ ++LL+DE S GL QI ++Q+ +
Sbjct: 138 M---------SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE--Q 186
Query: 393 ITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQ 424
TI + Q A +A L D +L G +V +
Sbjct: 187 GMTIFLVEQNANQALKLADRGYVLENGHVVLE 218
|
Length = 237 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-06
Identities = 72/276 (26%), Positives = 116/276 (42%), Gaps = 64/276 (23%)
Query: 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP 242
+ I KD++ + + +GP G GK+TLL +AG L+D +T + G + VP
Sbjct: 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LED---ITSGDLFIGEKRMNDVP 71
Query: 243 --QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEID 300
+R + Q+ + ++V E M F + G EI++R + E+
Sbjct: 72 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK-----EEINQRVNQVA-----EV- 120
Query: 301 AYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA 360
L ++L D+ + +SGGQ++RV G LV
Sbjct: 121 --------------LQLAHLL--------------DRKPKALSGGQRQRVAIGRTLVAEP 152
Query: 361 KVLLMDEISTGLDSSTTFQ----ICKYMKQMVHVLEITTI-VSLLQPAPEAYDLFDNIIL 415
V L+DE + LD++ Q I + K+ L T I V+ Q EA L D I++
Sbjct: 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKR----LGRTMIYVTHDQ--VEAMTLADKIVV 206
Query: 416 LSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
L G++ G K LE + Y P + VA F+
Sbjct: 207 LDAGRVAQVG---KPLELYHY-----PANRFVAGFI 234
|
Length = 369 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-06
Identities = 62/250 (24%), Positives = 108/250 (43%), Gaps = 38/250 (15%)
Query: 850 PFQPLSL--------AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMG 901
P P +L F VN++ + A L ++ RPG AL+G
Sbjct: 324 PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPA----------LDGLNLTVRPGETVALVG 373
Query: 902 VSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ-------ATFARVSGYCEQNDIHSP 954
SGAGK+TL +L + G I + G Q A A V + + +
Sbjct: 374 PSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLDPAELRARMALVP---QDPVLFA- 427
Query: 955 HVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014
+V E++ + ++++ R E + L + +G GV LS QR+
Sbjct: 428 -ASVMENIRYGRPDATDEEVEAAARAAHAHEF--ISALPEGYDTYLGERGV-TLSGGQRQ 483
Query: 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1074
R+ IA ++ + I+ +DE TS LDA + +V + + T+ GRT + H+ + + +A
Sbjct: 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMKGRTTLIIAHRLAT-VLKA 541
Query: 1075 FDELLLMKRG 1084
D +++M +G
Sbjct: 542 -DRIVVMDQG 550
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 22/196 (11%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGY--------- 932
Q L D++ G L+G SGAGK++L+ VL + G ++I+G
Sbjct: 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPS 73
Query: 933 PKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS--SDIDSKTRKMFVDEVMDLV 990
K R G Q PH+TV ++L+ A R+ S + R ++++ +
Sbjct: 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLI-EAPCRVLGLSKDQALARAE---KLLERL 129
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
L+P + P LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +
Sbjct: 130 RLKPYADR---FP--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184
Query: 1051 RNTVDTGRTVVCTIHQ 1066
R +TG T V H+
Sbjct: 185 RELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 43/219 (19%), Positives = 86/219 (39%), Gaps = 64/219 (29%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L+++ VL + GVSG+GK+TL+ G Y G + +
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPK-------- 56
Query: 944 GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE----PLTNAM 999
S + + F+D++ L+++ L +
Sbjct: 57 --------FSRNKLI-----------------------FIDQLQFLIDVGLGYLTLGQKL 85
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 1058 RTVVCTIHQPSIDIFEAFDELLLM-----KRGGQVIYAG 1091
TV+ H D+ + D ++ K GG+V+++G
Sbjct: 140 NTVILIEHNL--DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-06
Identities = 69/274 (25%), Positives = 120/274 (43%), Gaps = 59/274 (21%)
Query: 166 AENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLK 225
ENV I+P +K L+ +S ++ ++GP G+GK+TL + G
Sbjct: 319 VENVT----IVPPGGKK-PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIW---PP 370
Query: 226 LTGKIKYCGHEFKEFVPQ---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLA 282
+G ++ G + K++ + + Y+ Q D+ TV E
Sbjct: 371 TSGSVRLDGADLKQWDRETFGKHIGYLPQ-DVELFPGTVAEN------------------ 411
Query: 283 EISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRG 341
I+R + A DPE ++A LAG + +L+L G DT++G
Sbjct: 412 -IARFGENA----DPE--KIIEAAKLAG-----VHELILRLPDGY----DTVIGPG-GAT 454
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQM----VHVLEITTIV 397
+SGGQ++R+ L G K++++DE ++ LD + +K + + V+ IT
Sbjct: 455 LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRP 514
Query: 398 SLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVL 431
SLL D I++L +G+I G R++VL
Sbjct: 515 SLLGCV-------DKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-06
Identities = 60/248 (24%), Positives = 99/248 (39%), Gaps = 43/248 (17%)
Query: 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP 242
+ LK V+ V P + LLG GAGK+TL+ L+G + G I + +
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDH 74
Query: 243 ----QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
Q I Q E+TV E + + GR L T+ K G+
Sbjct: 75 KLAAQLGIGIIYQELSVIDELTVLENL-YIGRHL---TK-----------KVCGV---NI 116
Query: 299 ID-AYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLV 357
ID M+ + ++ +L +GL + D V + +S K+ + + L+
Sbjct: 117 IDWREMR------VRAAM----MLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLM 161
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417
AKV++MDE ++ L + + M Q+ E T IV + E + D ++
Sbjct: 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK--EGTAIVYISHKLAEIRRICDRYTVMK 219
Query: 418 EGQIVYQG 425
+G V G
Sbjct: 220 DGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYTEGDISISG-- 931
L+ +S + A +G SG GK+T + D++ + EG+I I G
Sbjct: 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRN 71
Query: 932 -YPKNQAT--FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMD 988
Y K + G Q P +++E++ + LR++ D+ + V+E +
Sbjct: 72 IYDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLK 128
Query: 989 LVEL-EPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
L + + + + LS Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 129 GAALWDEVKDKLK--ESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
|
Length = 250 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 50/204 (24%), Positives = 95/204 (46%), Gaps = 30/204 (14%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG---------- 931
++L+ VS G + +++G SG+GK+T + + + +EG I ++G
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTINLVRDKD 76
Query: 932 -----YPKNQATF--ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS-SDIDSKTRKMF- 982
KNQ R++ + ++ S H+TV E+++ + L S +++ R +
Sbjct: 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWS-HMTVLENVMEAPIQVLGLSKQEARERAVKY 135
Query: 983 VDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
+ +V + G V LS Q++R++IA L P ++ DEPTS LD
Sbjct: 136 LAKV-------GIDERAQGKYPVH-LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPEL 187
Query: 1043 AAIVMRTVRNTVDTGRTVVCTIHQ 1066
V+R ++ + G+T+V H+
Sbjct: 188 VGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 5e-06
Identities = 55/261 (21%), Positives = 97/261 (37%), Gaps = 58/261 (22%)
Query: 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAG--KLDDDLKLTGKIKYCGHEFK 238
K +++ VS VK + LLGP GAGKTT + G K D GKI +
Sbjct: 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS-----GKI-LLDGQDI 64
Query: 239 EFVP-----QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGI 293
+P + Y+ Q F ++TV E
Sbjct: 65 TKLPMHKRARLGIGYLPQEASIFRKLTVEEN----------------------------- 95
Query: 294 KPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTG 353
I A ++ L+ ++ + +L+ + +SGG+++RV
Sbjct: 96 -----ILAVLEIRGLSKKEREEKLEELLEEFHITHLRK-----SKASSLSGGERRRVEIA 145
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLL--QPAPEAYDLFD 411
L K LL+DE G+D I ++++ +L+ I L+ E + D
Sbjct: 146 RALATNPKFLLLDEPFAGVDPIAVQDI----QKIIKILKDRGIGVLITDHNVRETLSITD 201
Query: 412 NIILLSEGQIVYQGPREKVLE 432
++ EG+++ +G E++
Sbjct: 202 RAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 5e-06
Identities = 60/253 (23%), Positives = 100/253 (39%), Gaps = 68/253 (26%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAG--------------KLDDDLKLTGK 229
+LK + VK + +++GP G+GK+TLL + KL DD K +
Sbjct: 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINE 73
Query: 230 I-KYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRRE 288
+ + G F++F +L F +TV E + LA I +
Sbjct: 74 LRQKVGMVFQQF------------NL-FPHLTVLENI--------------TLAPIKVKG 106
Query: 289 KEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKK 348
+ +A +A L L+ +GL AD +SGGQ++
Sbjct: 107 M-------SKAEAEERALEL------------LEKVGLADKAD-----AYPAQLSGGQQQ 142
Query: 349 RVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYD 408
RV L KV+L DE ++ LD ++ MK + E T+V + A +
Sbjct: 143 RVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE--EGMTMVVVTHEMGFARE 200
Query: 409 LFDNIILLSEGQI 421
+ D +I + +G+I
Sbjct: 201 VADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 5e-06
Identities = 47/178 (26%), Positives = 71/178 (39%), Gaps = 23/178 (12%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIH 952
G + G +GAGKTTL+ VLAG G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 953 SPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPG-----VDG 1007
++ E+L F L + ++M + A+VGL G V
Sbjct: 94 KADLSTLENLHFLCGLH-----GRRAKQMPGSAL-----------AIVGLAGYEDTLVRQ 137
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
LS Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 138 LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 58/189 (30%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYTEGDISISGYPK 934
Q L+ ++ +TAL+G SG GK+T + D++ K EG++ + G
Sbjct: 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKI----EGEVLLDG--- 69
Query: 935 NQATFARVSGYCEQNDI-----------HSPH---VTVYESLLFSAWLRLSSDIDSKTRK 980
Y D+ P+ +++Y+++ + R D K
Sbjct: 70 -------QDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGP--RTHGIKDKKKLD 120
Query: 981 MFV----------DEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIF 1030
V DEV D ++ +A+ GLS Q++RL IA L P ++
Sbjct: 121 EIVEKSLKGAALWDEVKDRLK----KSAL-------GLSGGQQQRLCIARALAVEPEVLL 169
Query: 1031 MDEPTSGLD 1039
MDEPTS LD
Sbjct: 170 MDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-06
Identities = 53/211 (25%), Positives = 82/211 (38%), Gaps = 57/211 (27%)
Query: 870 EMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISI 929
EMK ++ L +VS R G + +L G +GAGK+TLM VL+G G EG+I
Sbjct: 7 EMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIF 66
Query: 930 SGYPKNQATFARVSGYCEQND---IHS-----PHVTVYESLLF----------------- 964
G QA+ R + E+ IH ++V E++
Sbjct: 67 EGEEL-QASNIRDT---ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL 122
Query: 965 --SAWLR-LSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVE 1021
L L DI+ T V +L GL +Q + IA
Sbjct: 123 RAQKLLAQLKLDINPATP------VGNL-----------------GLGQQQ--LVEIAKA 157
Query: 1022 LVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
L ++ +DEPT+ L A+++ +R+
Sbjct: 158 LNKQARLLILDEPTASLTESETAVLLDIIRD 188
|
Length = 506 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 56/248 (22%), Positives = 104/248 (41%), Gaps = 59/248 (23%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTT---LLMALAGKLDDDLKLTGK-IKYCGHEFKE 239
+L+DVS + P +T L+GP G+GK+T LL + L GK I H++
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL- 86
Query: 240 FVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
+ + Q + F ++++ + + G+ + +
Sbjct: 87 ---HSKVSLVGQEPVLFAR-SLQDNIAY-----GLQS-----------------CSFECV 120
Query: 300 DAYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRG--VSGGQKKRVTTGEML 356
+ + A ++ +L G D T VG+ +G +SGGQK+RV L
Sbjct: 121 --------KEAAQKAHAHSFISELASGYD----TEVGE---KGSQLSGGQKQRVAIARAL 165
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVH---VLEITTIVSLLQPAPEAYDLFDNI 413
+ +VL++DE ++ LD+ + Q+ + + VL I +S ++ A D I
Sbjct: 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERA-------DQI 218
Query: 414 ILLSEGQI 421
++L G+I
Sbjct: 219 LVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 6e-06
Identities = 68/266 (25%), Positives = 117/266 (43%), Gaps = 62/266 (23%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
IL DVS ++P ++GP G+GK+TLL L G + +G + Y G + Q
Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF---ETPESGSVFYDGQDLAGLDVQ 523
Query: 244 ---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEID 300
R + QN GR L G+ +E +A A + D +
Sbjct: 524 AVRRQLGVVLQN----------------GR-LMSGSIFENIA------GGAPLTLD---E 557
Query: 301 AYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA 360
A +A +AG LA D +G+ T++ + +SGGQ++R+ LV
Sbjct: 558 A-WEAARMAG----LAEDIRAMPMGMH----TVI-SEGGGTLSGGQRQRLLIARALVRKP 607
Query: 361 KVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV-----SLLQPAPEAYDLFDNIIL 415
++LL DE ++ LD+ T + + +++ L++T IV S ++ A D I +
Sbjct: 608 RILLFDEATSALDNRTQAIVSESLER----LKVTRIVIAHRLSTIRNA-------DRIYV 656
Query: 416 LSEGQIVYQGPREKVLE----FFEYM 437
L G++V QG ++++ F +
Sbjct: 657 LDAGRVVQQGTYDELMAREGLFAQLA 682
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 20/159 (12%)
Query: 896 LTALMGVSGAGKTTLM-------DVLAGRKTGGYTEGDISISGY----PKNQATFARVS- 943
+TA++G SG GKTTL+ D + G + EG I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFRV----EGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 944 GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLP 1003
G Q P +++Y+++ F R+ V+E + L + + P
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKP 143
Query: 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
G LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 144 GTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 50/212 (23%), Positives = 86/212 (40%), Gaps = 49/212 (23%)
Query: 176 LPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGH 235
+ + ++ ILK V +VK ++GP G+GK+TLL LAG LDD +G+++ G
Sbjct: 16 VGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG-LDD--PSSGEVRLLGQ 72
Query: 236 EFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLG-VGTRYEMLAEISRREK---EA 291
LH ++ R +G V + ++ ++ E
Sbjct: 73 -----------------PLH--KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPL 113
Query: 292 GIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR---RGVSGGQKK 348
++ + D+ A AL L+ +GL G ++ +SGG+++
Sbjct: 114 ELRGESSADSRAGAKAL------------LEAVGL--------GKRLTHYPAQLSGGEQQ 153
Query: 349 RVTTGEMLVGPAKVLLMDEISTGLDSSTTFQI 380
RV G VL DE + LD +T +I
Sbjct: 154 RVALARAFAGRPDVLFADEPTGNLDRATGDKI 185
|
Length = 228 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 7e-06
Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 52/232 (22%)
Query: 199 TLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFG 257
T ++GP G+GK+TLL +AG + +G++ G + P R + + Q + F
Sbjct: 27 TAIVGPSGSGKSTLLNLIAGF---ETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFA 83
Query: 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLAT 317
+TV + + LG+ ++ AE R+ I+ + LAG + L
Sbjct: 84 HLTVEQNVG-----LGLSPGLKLTAE--DRQA---------IEVALARVGLAGLEKRLP- 126
Query: 318 DYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTT 377
+SGG+++RV +LV VLL+DE LD +
Sbjct: 127 ----------------------GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164
Query: 378 FQICKYMKQMVHVLEITTIVSLL----QPAPEAYDLFDNIILLSEGQIVYQG 425
+ M +V L T +++L QP +A L ++ L G+I QG
Sbjct: 165 AE----MLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 51/231 (22%), Positives = 96/231 (41%), Gaps = 46/231 (19%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMAL--AGKLDDDLKLTGKIKYCGHEFKE 239
K + L VS P+ +T L+GP G+GK+TLL ++ L+ ++ +TG I Y GH
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI-- 74
Query: 240 FVP-------QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAG 292
+ P ++ + Q F M++ E + + R G+ + + + + K A
Sbjct: 75 YSPRTDTVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGAS 133
Query: 293 IKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTT 352
I E+ + +AL +SGGQ++RV
Sbjct: 134 IW--DEVKDRLHDSALG--------------------------------LSGGQQQRVCI 159
Query: 353 GEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPA 403
+L K++L+DE ++ LD + +I + + + + + +Q A
Sbjct: 160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQA 210
|
Length = 252 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 7e-06
Identities = 53/199 (26%), Positives = 78/199 (39%), Gaps = 72/199 (36%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYTEGDISISG 931
D +L++V+ +TAL+G SG GK+T + D++ G + EG I + G
Sbjct: 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH----EGHIYLDG 69
Query: 932 --------------------------YPK----NQATFARVSGYCEQNDIHSPHVTVYES 961
+PK N A R+ G +++ I V ES
Sbjct: 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEE---RVEES 126
Query: 962 LLFSA-WLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAV 1020
L +A W DEV D ++ L GLS Q++RL IA
Sbjct: 127 LKAAALW----------------DEVKDKLDKSAL-----------GLSGGQQQRLCIAR 159
Query: 1021 ELVANPSIIFMDEPTSGLD 1039
+ +P +I MDEP S LD
Sbjct: 160 TIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 7e-06
Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 32/215 (14%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
LLRDVS G LT ++G +G+GK+TL+ L + +IS G + + A V
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS-------QFEIS-EGRVWAERSIAYV 726
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEV------MDLVELEPLT 996
+Q I + TV ++LF D + D V DL +L
Sbjct: 727 P---QQAWIMN--ATVRGNILF---------FDEEDAARLADAVRVSQLEADLAQLGGGL 772
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
+G GV+ LS Q+ R+++A + AN + +D+P S LDA V+
Sbjct: 773 ETEIGEKGVN-LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA 831
Query: 1057 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
G+T V HQ + + D ++ + G+V ++G
Sbjct: 832 GKTRVLATHQ--VHVVPRADYVVALGD-GRVEFSG 863
|
Length = 1560 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 45/189 (23%), Positives = 89/189 (47%), Gaps = 12/189 (6%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYTEGDISISGYPKNQAT 938
Q+L ++ G + ++G SG+GK+TL+ + L +G + ++ ++
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74
Query: 939 FARVSGYCEQNDIHSPHVTVYESLLFSA-WLRLSSDIDSKTRKMFVDEVMDLVELEPLTN 997
+ +G Q PH+T E+++F +R +S +++ + E++ V L +
Sbjct: 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAR---ELLAKVGLAERAH 131
Query: 998 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
P LS Q++R+ IA L P ++ DEPTS LD V++ +++ + G
Sbjct: 132 H---YPS--ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG 186
Query: 1058 RTVVCTIHQ 1066
T+V H+
Sbjct: 187 MTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 8e-06
Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 42/183 (22%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT--- 938
Q+++ + G L+G SG GK+TL+ ++AG + T G+I I G N+
Sbjct: 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPAD 75
Query: 939 --FARVSGYCEQNDIHSPHVTVYESLLFSAW-LRL----SSDIDSKTRKMFVDEVMDLVE 991
A V QN PH++V E++ A+ L++ ++I+ + V E ++E
Sbjct: 76 RDIAMVF----QNYALYPHMSVRENM---AYGLKIRGMPKAEIEER-----VAEAARILE 123
Query: 992 LEPLTNAMVGLPGVD----GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAI 1045
LEPL +D LS QR+R+ + +V P++ DEP S LDA R
Sbjct: 124 LEPL---------LDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ-- 172
Query: 1046 VMR 1048
MR
Sbjct: 173 -MR 174
|
Length = 356 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 9e-06
Identities = 60/275 (21%), Positives = 118/275 (42%), Gaps = 53/275 (19%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMAL--AGKLDDDLKLTGKIKYCGHE----- 236
+ LK+++ + +++T L+GP G GK+TLL +L L +++ GK+ + G +
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74
Query: 237 FKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
+R + Q F M++ + + + R G+ + E+ + K+A + D
Sbjct: 75 IDVVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAAL-WD 132
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
E+ + +AL G+SGGQ++R+ L
Sbjct: 133 -EVKDRLHDSAL--------------------------------GLSGGQQQRLCIARAL 159
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416
+VLL+DE ++ LD T +I + ++++ + TIV + +A + D
Sbjct: 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELK---KKYTIVIVTHNMQQAARISDRTAFF 216
Query: 417 SEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
+G++V GP E++ F P K D++
Sbjct: 217 YDGELVEYGPTEQI--------FTNPKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 9e-06
Identities = 60/250 (24%), Positives = 115/250 (46%), Gaps = 57/250 (22%)
Query: 195 PSR-MTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQND 253
P+R +T L+GP G+GKTT L L +++D K++G +Y G D
Sbjct: 45 PARAVTSLMGPTGSGKTTFLRTL-NRMND--KVSG-YRYSG------------------D 82
Query: 254 LHFGEMTV---RETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP-------EIDAYM 303
+ G ++ R+ ++F R VG ++ +P+P + A +
Sbjct: 83 VLLGGRSIFNYRDVLEFRRR---VGMLFQ--------------RPNPFPMSIMDNVLAGV 125
Query: 304 KATALAGQKT--SLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
+A L +K +A + ++ D D + R +SGGQ++ + L +
Sbjct: 126 RAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFR--LSGGQQQLLCLARTLAVNPE 183
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421
VLL+DE ++ LD +TT +I ++++ + L T++ + +A + D L +G++
Sbjct: 184 VLLLDEPTSALDPTTTEKIEEFIRSLADRL---TVIIVTHNLAQAARISDRAALFFDGRL 240
Query: 422 VYQGPREKVL 431
V +GP E++
Sbjct: 241 VEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-06
Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 25/211 (11%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPKNQAT--- 938
LR+++ G AL+G SG+GK+T+ ++L T Y EG+I + G+ T
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 939 ----FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVE-LE 993
A VS QN +H + T+ ++ ++ + S + + +M MD + ++
Sbjct: 415 LRNQVALVS----QN-VHLFNDTIANNIAYARTEQYSREQIEEAARM--AYAMDFINKMD 467
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
+ ++G GV LS QR+R+ IA L+ + I+ +DE TS LD + + + +
Sbjct: 468 NGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DE 525
Query: 1054 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
+ RT + H+ S E DE+L+++ G
Sbjct: 526 LQKNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 28/205 (13%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYTEGDISISGY 932
RL +L++VS G AL G SGAGK+TL+ L +GR + + ++
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 933 PKNQATFARVS--GYCEQNDIHSPHVT----VYESLLFSAWLRLSSDIDSKT--RKMFVD 984
+ R GY Q P V+ V E LL R ++ ++ ++ +
Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIP 139
Query: 985 EVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
E L L P T S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 140 E--RLWHLPPAT-----------FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186
Query: 1045 IVMRTVRNTVDTGRTVVCTIHQPSI 1069
+V+ + G ++ H +
Sbjct: 187 VVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 58/258 (22%), Positives = 105/258 (40%), Gaps = 51/258 (19%)
Query: 187 KDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKY-----------CGH 235
+DVS + P + ++G G+GK+TLL LAG+L D G Y
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLS 76
Query: 236 EFKEFVPQRT-CAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIK 294
E + RT ++ QN M V + R + +G R+
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH---------------- 120
Query: 295 PDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGE 354
Y A A D++ ++ +I + D + R SGG ++R+
Sbjct: 121 -------YGNIRATAQ-------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIAR 161
Query: 355 MLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNII 414
LV +++ MDE + GLD S ++ ++ +V L + I+ + A L ++
Sbjct: 162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVII-VTHDLGVARLLAQRLL 220
Query: 415 LLSEGQIVYQGPREKVLE 432
++ +G++V G ++VL+
Sbjct: 221 VMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 63/274 (22%), Positives = 113/274 (41%), Gaps = 45/274 (16%)
Query: 156 PTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMA 215
+ V N+A + +R + S+ RK ++D+S V + G G+G+T L+
Sbjct: 251 NAMKENVSNLAHETVFEVRNVTSRDRKK--VRDISFSVCRGEILGFAGLVGSGRTELMNC 308
Query: 216 LAGKLDDDLKLTGKIKYCGHEFKEFVP----QRTCAYISQNDLH---FGEMTVRETMDFS 268
L G D + G+I+ G + P ++ AYI+++ F ++ + M
Sbjct: 309 LFGV---DKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNM--- 362
Query: 269 GRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLAT-DYVLKLLGLD 327
ISR K+ G K A L + T + +LL L
Sbjct: 363 --------------AISRSLKDGGYK---------GAMGLFHEVDEQRTAENQRELLALK 399
Query: 328 ICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQM 387
C +Q +SGG +++V + L +V++ DE + G+D +I K M+Q+
Sbjct: 400 -CHSV---NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQL 455
Query: 388 VHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421
++ +VS PE + D I + EG++
Sbjct: 456 ADDGKVILMVS--SELPEIITVCDRIAVFCEGRL 487
|
Length = 510 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 65/255 (25%), Positives = 111/255 (43%), Gaps = 54/255 (21%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ- 243
ILK +S ++ ++GP G+GK+TL L G +G ++ G + +++ +
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW---PPTSGSVRLDGADLRQWDREQ 407
Query: 244 --RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
R Y+ Q D+ + T+ E I+R +EA DPE
Sbjct: 408 LGRHIGYLPQ-DVELFDGTIAEN-------------------IARFGEEA----DPE--K 441
Query: 302 YMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA 360
++A LAG + +L+L G D T +G+ +SGGQ++R+ L G
Sbjct: 442 VIEAARLAG-----VHELILRLPQGYD----TRIGEG-GATLSGGQRQRIALARALYGDP 491
Query: 361 KVLLMDEISTGLDSSTTFQICKYMKQM----VHVLEITTIVSLLQPAPEAYDLFDNIILL 416
++++DE ++ LDS + + V+ I S L D I++L
Sbjct: 492 FLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV-------DKILVL 544
Query: 417 SEGQIVYQGPREKVL 431
+G+I GPRE+VL
Sbjct: 545 QDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 54/257 (21%), Positives = 116/257 (45%), Gaps = 47/257 (18%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDL---KLTGKIKYCGHEFKE- 239
+ +K+V+ + +++T ++GP G GKTTLL ++ +++D + ++ GKI + G + +
Sbjct: 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSI-NRMNDHIPGFRVEGKIYFKGQDIYDP 75
Query: 240 ----FVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKP 295
++ + Q F M++ + + F R GV +++++ + K+A +
Sbjct: 76 QLDVTEYRKKVGMVFQKPTPF-PMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD 134
Query: 296 DPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEM 355
+ + + T L SGGQ++R+
Sbjct: 135 EVKSELNKPGTRL----------------------------------SGGQQQRLCIARA 160
Query: 356 LVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415
L +V+L+DE ++ LD T +I K ++++ E TIV + +A + D I
Sbjct: 161 LAVEPEVILLDEPTSALDPIATQRIEKLLEELS---ENYTIVIVTHNIGQAIRIADYIAF 217
Query: 416 LSEGQIVYQGPREKVLE 432
+ G+++ GP +++E
Sbjct: 218 MYRGELIEYGPTREIVE 234
|
Length = 250 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 1e-05
Identities = 64/226 (28%), Positives = 106/226 (46%), Gaps = 32/226 (14%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPKN 935
+ +L+ +S + G AL+G +G GK+TL+ +L T + +G+I ++G P
Sbjct: 350 DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-- 403
Query: 936 QATFARVSGYCEQNDIHSPHVT---VYESLLFSAWLR--LSSDIDSKTRKMFVDEVMDLV 990
++ Y E + V V+ LFSA LR L + + + + EV+ V
Sbjct: 404 ------IADYSEAALRQAISVVSQRVH---LFSATLRDNLLLAAPNASDEALI-EVLQQV 453
Query: 991 ELEPLTNAMVGLP---GVDG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
LE L GL G G LS +++RL IA L+ + ++ +DEPT GLDA
Sbjct: 454 GLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQ 513
Query: 1046 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
++ + +TV+ H+ + E FD + +M GQ+I G
Sbjct: 514 ILELLA-EHAQNKTVLMITHR--LTGLEQFDRICVMD-NGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-05
Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 32/210 (15%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA--RVSGYCEQND 950
PG + AL+G +GAGK+T+M VL TG YT SI Y + TF + S
Sbjct: 29 PGRVMALVGENGAGKSTMMKVL----TGIYTRDAGSIL-YLGKEVTFNGPKSSQEAGIGI 83
Query: 951 IHS-----PHVTVYESLLF-----SAWLRLSSDIDSKTRKMF--VDEVMDLVELEPLTNA 998
IH P +T+ E++ + + R ID K KM+ D+++ + L ++
Sbjct: 84 IHQELNLIPQLTIAENIFLGREFVNRFGR----IDWK--KMYAEADKLLARLNLRFSSDK 137
Query: 999 MVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
+VG LS +++ + IA L +I MDEPT L + R +R GR
Sbjct: 138 LVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGR 192
Query: 1059 TVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1088
+V H+ +IFE D++ + R GQ I
Sbjct: 193 GIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 15/160 (9%)
Query: 887 VSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSG-- 944
VS R G A++G +G+GK+TL +LAG T G+I I+ +P + ++ S
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGEILINDHPLHFGDYSFRSKRI 89
Query: 945 ---YCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-LTNAMV 1000
+ + N +P + + + LRL++D++ + R+ + E + +V L P N
Sbjct: 90 RMIFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYP 147
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
+ L+ Q++R+ +A L+ P II DE + LD
Sbjct: 148 HM-----LAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 15/208 (7%)
Query: 886 DVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN-----QATFA 940
DVS R G + + G+ GAG+T L+ L G G + EG++ I+G P + QA A
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRA 336
Query: 941 RVSGYCEQNDIHS--PHVTVYESLLFSAWLRLS--SDIDSKTRKMFVDEVMDLVELEPLT 996
++ E H P + V +++ S ID+ + + ++++
Sbjct: 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK--- 393
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
A LP + LS +++ +A L+ NP ++ +DEPT G+D A + + +
Sbjct: 394 TASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452
Query: 1057 GRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
G ++ + ++ D +L++ G
Sbjct: 453 GVAII-VVSSELAEVLGLSDRVLVIGEG 479
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 55/188 (29%), Positives = 81/188 (43%), Gaps = 42/188 (22%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYTEGDISISG--- 931
Q L D+S +TA +G SG GK+TL+ D++ + EG+I + G
Sbjct: 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI----EGEIRLDGQNI 94
Query: 932 YPKNQ--ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFV------ 983
Y K A R G Q P ++YE++++ LRL + + V
Sbjct: 95 YDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYG--LRLQGINNRRVLDEAVERSLRG 151
Query: 984 ----DEVMD-LVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
DEV D L E NA GLS Q++RL IA + P ++ +DEPTS L
Sbjct: 152 AALWDEVKDRLHE-----NAF-------GLSGGQQQRLVIARAIAIEPEVLLLDEPTSAL 199
Query: 1039 DARAAAIV 1046
D + +
Sbjct: 200 DPISTLKI 207
|
Length = 272 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 14/189 (7%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTE-GDISISGYPKNQAT 938
Q L+ V+ RPG + L G SGAGK+TL+ ++ G R + G I+ +
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 939 FARVS-GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVE-LEPLT 996
F R G Q+ TVY+++ + +S D + R V +D V L+
Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR---VSAALDKVGLLDKAK 132
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
N + L G +++R+ IA +V P+++ DEPT LD + ++R
Sbjct: 133 NFPIQLSG------GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV 186
Query: 1057 GRTVVCTIH 1065
G TV+ H
Sbjct: 187 GVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 28/170 (16%), Positives = 64/170 (37%), Gaps = 8/170 (4%)
Query: 1224 QKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERT--VFYRERAAGMYSTLAYAF 1281
L + L A + + E+ + R +G+ S L Y
Sbjct: 85 PLFNPNSGYAYYLLGLLLFLLILIG--ALIIALSIVEEKESRIKERLLVSGV-SPLKYLL 141
Query: 1282 SQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTP 1341
++L +L+ Q ++ +L+L+ G L + ++ + + G ++ +L
Sbjct: 142 GKILGDLLVGLIQLLIILLLLF---GLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFK 198
Query: 1342 APQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLV 1391
+ ++ + L + F G L P +P + +W + + P + GL+
Sbjct: 199 NSEAAILVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLL 248
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 331 DTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHV 390
DT + + + R SGG+++R+ +L+ A ++L+DE + GLD T Q+ + + V
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL---LSLIFEV 144
Query: 391 LEITTIVSL---LQPAPEAYDLFDNIILLSEGQIVYQG 425
L+ T++ + L + D I+ L G+I+ QG
Sbjct: 145 LKDKTLIWITHHLT----GIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 26/173 (15%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYTEGDISISG---YPKN 935
Q L D++ +TAL+G SG GK+T + L + EG++ + G Y K+
Sbjct: 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77
Query: 936 QATF---ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVM----- 987
RV G Q P +++Y+++ + R+ D K V+ +
Sbjct: 78 VDVVELRKRV-GMVFQKPNPFP-MSIYDNVAYGP--RIHGIKDKKELDKIVEWALKKAAL 133
Query: 988 -DLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
D V+ + +A+ LS Q++RL IA + P +I MDEPTS LD
Sbjct: 134 WDEVKDDLKKSAL-------KLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 38/253 (15%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMAL--AGKLDDDLKLTGKIKYCGHEFKEFV 241
Q LK ++ + ++T L+GP G GK+TLL L L + +K+TGK+ G +
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI---- 72
Query: 242 PQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
++ ++ ++ M F + YE +A R + GIK +D
Sbjct: 73 ---------YGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQ---GIKDKKVLDE 120
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
++ +L G LK G+SGGQ++R+ +
Sbjct: 121 VVE-RSLRGAALWDEVKDRLKSHAF--------------GLSGGQQQRLCIARTIAMEPD 165
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPE-----AYDLFDNIILL 416
V+LMDE ++ LD T +I + M+++ I + +Q A A+ L ++
Sbjct: 166 VILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEH 225
Query: 417 SEGQIVYQGPREK 429
+ Q+++ P++
Sbjct: 226 DDTQVIFSNPKDD 238
|
Length = 249 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 59/257 (22%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF---V 241
ILKD+S + + ++GP GAGK+TL+ L +L D + G I G + K
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLI-KLINRLIDPTE--GSILIDGVDIKTIDVID 74
Query: 242 PQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
+R + Q H E TV++ +++
Sbjct: 75 LRRKIGMVFQQP-HLFEGTVKDNIEY---------------------------------- 99
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV---SGGQKKRVTTGEMLVG 358
L G+K ++ +Y L ++GL+ + R V SGG+ +RV+ L
Sbjct: 100 ---GPMLKGEK-NVDVEYYLSIVGLN-------KEYATRDVKNLSGGEAQRVSIARTLAN 148
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418
+VLL+DE ++ LD ++T I + + ++ + + +T I + +A + D L++
Sbjct: 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIW-ITHNMEQAKRIGDYTAFLNK 207
Query: 419 GQIVYQGPREKVLEFFE 435
G +V K +FF
Sbjct: 208 GILVEYA---KTYDFFT 221
|
Length = 241 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 11/196 (5%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGY------PKN 935
+LR ++ RPG + A+MG +G+GK+TL LAGR+ T G + G P++
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74
Query: 936 QATFARVSGYCEQNDIHSPHVTVYESLLFSAW--LRLSSDIDSKTRKMFVDEVMDLVELE 993
+A + Q + P V+ + L +A +R + R F D + + + L
Sbjct: 75 RAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL 131
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
+ ++ G S ++KR I V P + +DE SGLD A IV V +
Sbjct: 132 KMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSL 191
Query: 1054 VDTGRTVVCTIHQPSI 1069
D R+ + H I
Sbjct: 192 RDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 65/263 (24%), Positives = 107/263 (40%), Gaps = 48/263 (18%)
Query: 153 RAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTL 212
R I T P I ++ L + KK I K + + +++T L+GP G+GK+T
Sbjct: 9 RHIITFPEEEIALSTK---DLHVYYGKKEAI---KGIDMQFEKNKITALIGPSGSGKSTY 62
Query: 213 LMALAGKLD--DDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGR 270
L +L D D ++TG+I Y G + I++ +++ EM M F
Sbjct: 63 LRSLNRMNDTIDIARVTGQILYRGID------------INRKEINVYEMRKHIGMVFQRP 110
Query: 271 CLGVGTRYEMLAEISRREKEAGIKPDPEID----AYMKATALAGQ-KTSLATDYVLKLLG 325
+ YE + R AG+K +D +K AL Q K L
Sbjct: 111 NPFAKSIYENITFALER---AGVKDKKVLDEIVETSLKQAALWDQVKDDL---------- 157
Query: 326 LDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMK 385
+ +SGGQ++R+ + +LLMDE ++ LD +T Q+ + M
Sbjct: 158 ----------HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMF 207
Query: 386 QMVHVLEITTIVSLLQPAPEAYD 408
++ I + +Q A A D
Sbjct: 208 ELKKNYTIIIVTHNMQQAARASD 230
|
Length = 267 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 65/269 (24%), Positives = 108/269 (40%), Gaps = 47/269 (17%)
Query: 863 YSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 922
Y P E KA L +V+ G L+G +G+GK+TL+ L G
Sbjct: 12 YMEGTPFEKKA----------LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP-- 59
Query: 923 TEGDISISGY----PKNQATFAR-----VSGYCEQNDIHSPHVTVYESLLFSAWLRLSSD 973
T G I I G K + + R V Y E T+ + + F S+
Sbjct: 60 TSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE---TIEKDIAFGPINLGLSE 116
Query: 974 IDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD-------GLSTEQRKRLTIAVELVANP 1026
+ + R V M+ +VGL D LS Q++R+ IA + P
Sbjct: 117 EEIENR---VKRAMN----------IVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEP 163
Query: 1027 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086
I+ +DEPT+GLD + ++ ++ + + D+ + D +++M + G+
Sbjct: 164 KILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNK-GK 222
Query: 1087 VIYAGPLGRQSQKLVEYFEAVP-GVPRIT 1114
G R+ K VE E++ VP++T
Sbjct: 223 CELQGTP-REVFKEVETLESIGLAVPQVT 250
|
Length = 287 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQ 401
+SGGQK+RV L KVLL DE ++ LD +TT I + +K++ L + TI+ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL-TILLITH 199
Query: 402 PAPEAYDLFDNIILLSEGQIVYQG 425
+ D + ++S G+++ QG
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQG 223
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 3e-05
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 22/89 (24%)
Query: 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMV----------HVLE 392
SGG K+R+ + L+ ++L++DE ++GLD + + + ++++ H+LE
Sbjct: 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156
Query: 393 ITTIVSLLQPAPEAYDLFDNIILLSEGQI 421
EA L D + +L+ G+I
Sbjct: 157 ------------EAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 3e-05
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV----- 397
SGGQ++R+ L+ +L++DE ++ LD T I + ++ + T IV
Sbjct: 98 SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAHRL 155
Query: 398 SLLQPAPEAYDLFDNIILLSEGQ 420
S ++ D II+L +G+
Sbjct: 156 STIR-------DADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 48/196 (24%), Positives = 77/196 (39%), Gaps = 44/196 (22%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
L+DVS + + ++LGP G GKTTLL +AG + G I+ G + +R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAER 76
Query: 245 TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMK 304
+ QN+ + V + + F + G+ RRE
Sbjct: 77 --GVVFQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRRE---------------- 111
Query: 305 ATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLL 364
+A Q +L L+GL + +SGG ++RV L ++LL
Sbjct: 112 ---IAHQ--------MLALVGL---EGA--EHKYIWQLSGGMRQRVGIARALAVEPQLLL 155
Query: 365 MDEISTGLDSSTTFQI 380
+DE LD+ T Q+
Sbjct: 156 LDEPFGALDALTREQM 171
|
Length = 259 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 59/217 (27%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGK---------LDDDLKLTGKIKY---- 232
L D+S V P + +L+GP GAGKTTL+ + GK D D LT ++
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 233 --CGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKE 290
G +F Q F +TVRE ++ +
Sbjct: 81 AGIGRKF-------------QKPTVFENLTVRENLELA---------------------- 105
Query: 291 AGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRV 350
+ D + A + A A ++ D +L +GL D + +S GQK+ +
Sbjct: 106 --LNRDKSVFASLFARLRAEERRR--IDELLATIGLGDERDRLAAL-----LSHGQKQWL 156
Query: 351 TTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQM 387
G +L K+LL+DE G+ + T + + +K +
Sbjct: 157 EIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSL 193
|
Length = 249 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 3e-05
Identities = 53/242 (21%), Positives = 97/242 (40%), Gaps = 39/242 (16%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
Q + DVS K + ++GP GAGKTTL+ L D G+I G +
Sbjct: 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDI------ 399
Query: 244 RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYM 303
+++ L TV + R + R + +
Sbjct: 400 ---NTVTRESLRKSIATVFQDAGLFNRSIRENIRLG--------------REGATDEEVY 442
Query: 304 KATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVL 363
+A K + A D++LK DT+VG++ R +SGG+++R+ ++ A +L
Sbjct: 443 EAA-----KAAAAHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAILKNAPIL 493
Query: 364 LMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVY 423
++DE ++ LD T ++ + + I L A D ++ L +G+++
Sbjct: 494 VLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNA----DLVLFLDQGRLIE 549
Query: 424 QG 425
+G
Sbjct: 550 KG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 3e-05
Identities = 52/253 (20%), Positives = 108/253 (42%), Gaps = 43/253 (16%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKL---DDDLKLTGKIKYCGHEFKEFV 241
ILKD++ + + + ++GP G+GK+TLL L + D +K+ GK+ Y G + +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 242 P---QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
++ + Q F +++ + + + + G+ + E+ + ++ G+ +
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKE-- 142
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVG 358
Y + + A Q +SGGQ++R+T L
Sbjct: 143 --VYDRLNSPASQ------------------------------LSGGQQQRLTIARALAL 170
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418
KVLLMDE ++ +D + I K + ++ + EI ++ P + + D + L
Sbjct: 171 KPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQ-QVARVADYVAFLYN 227
Query: 419 GQIVYQGPREKVL 431
G++V G ++
Sbjct: 228 GELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 331 DTMVGDQMRRGV--SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMV 388
DT VG+ RGV SGGQK+R++ L+ A++L++D+ + +D T QI ++Q
Sbjct: 442 DTEVGE---RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG 498
Query: 389 HVLEITTIVSL--LQPAPEAYDLFDNIILLSEGQIVYQGPREKVLE 432
T I+S L EA I+++ G I +G +++ +
Sbjct: 499 E--GRTVIISAHRLSALTEA----SEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 55/187 (29%), Positives = 80/187 (42%), Gaps = 39/187 (20%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYTEGDISISG--- 931
Q L DV +TA +G SG GK+T + D + G + G I++ G
Sbjct: 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV----TGKITLDGEDI 88
Query: 932 YPKNQATF---ARVSGYCEQNDIHSPHVTVYESLLFSAWL----RLSSDID-----SKTR 979
Y ARV G Q P ++YE++ + + R +++D S +
Sbjct: 89 YDPRLDVVELRARV-GMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRK 146
Query: 980 KMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+EV D + EP T GLS Q++RL IA + +P +I MDEP S LD
Sbjct: 147 AGLWEEVKDRLH-EPGT----------GLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
Query: 1040 ARAAAIV 1046
A A V
Sbjct: 196 PIATAKV 202
|
Length = 267 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 3e-05
Identities = 54/229 (23%), Positives = 87/229 (37%), Gaps = 62/229 (27%)
Query: 834 ENVGTTGHGPKKGMVLPFQPLSL------AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDV 887
E + K +L + LS+ A + ++ ++ A
Sbjct: 7 EKIEIAPFPEAKEHILEVKDLSIYYGEKRAVNDISMDIEKHA------------------ 48
Query: 888 SGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYT--EGDISISGYPKNQAT 938
+TAL+G SG GK+T + D++ ++ G EG ++I N
Sbjct: 49 --------VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG-LNILDSNINVVN 99
Query: 939 FARVSGYCEQNDIHSPHVTVYESL---LFSAWLRLSSDID-----SKTRKMFVDEVMDLV 990
R G Q P ++Y ++ L A R S +D S T+ DEV D +
Sbjct: 100 LRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRL 158
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
L+ LS Q++RL IA L P+++ +DEP S LD
Sbjct: 159 HSSALS-----------LSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 44/181 (24%)
Query: 887 VSGV---FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YTEGDISISGYPKNQA--- 937
V+ V R + +L+G +GAGKTT+ + L G + TGG I G P +Q
Sbjct: 21 VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80
Query: 938 ----TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDS---KT------------ 978
TF V + E +TV E+LL + +L + + S KT
Sbjct: 81 GVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALD 132
Query: 979 RKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
R E + L+E N G L+ Q++RL IA +V P I+ +DEP +GL
Sbjct: 133 RAATWLERVGLLEH---ANRQAG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGL 184
Query: 1039 D 1039
+
Sbjct: 185 N 185
|
Length = 255 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-05
Identities = 48/193 (24%), Positives = 73/193 (37%), Gaps = 62/193 (32%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
+LKD+S + ++GP GAGK+TLL LAG+L +G +K G K
Sbjct: 337 LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVK-VGETVK------ 386
Query: 245 TCAYISQ-NDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYM 303
Y Q D + TV L E+S + + E+ AY+
Sbjct: 387 -IGYFDQHRDELDPDKTV-------------------LEELSEGFPDGDEQ---EVRAYL 423
Query: 304 KATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV---SGGQKKRVTTGEMLVGPA 360
G G+ + V SGG+K R+ ++L+ P
Sbjct: 424 GR------------------FGFT-------GEDQEKPVGVLSGGEKARLLLAKLLLQPP 458
Query: 361 KVLLMDEISTGLD 373
+LL+DE + LD
Sbjct: 459 NLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 54/261 (20%), Positives = 109/261 (41%), Gaps = 47/261 (18%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMAL--AGKLDDDLKLTGKIKYCG-----HE 236
Q LK ++ ++ +++T L+GP G GK+T L L L +K+ G++ G +
Sbjct: 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76
Query: 237 FKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
++ + Q F M++ + + + R G+ + ++ + + K A +
Sbjct: 77 IDVNQLRKRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALW-- 133
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
E+ +K +AL G+SGGQ++R+ L
Sbjct: 134 DEVKDRLKKSAL--------------------------------GLSGGQQQRLCIARAL 161
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPE-----AYDLFD 411
+VLLMDE ++ LD +T +I + ++++ I + +Q A A+ L
Sbjct: 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNG 221
Query: 412 NIILLSEGQIVYQGPREKVLE 432
I+ + ++ P++K E
Sbjct: 222 EIVEFGDTVDLFTNPKDKRTE 242
|
Length = 250 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-05
Identities = 51/227 (22%), Positives = 95/227 (41%), Gaps = 17/227 (7%)
Query: 870 EMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISI 929
EMK ++ L + RPG L G +GAGK+TLM +L+G G +G+I
Sbjct: 3 EMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYW 62
Query: 930 SGYPKNQATFARVSGYCEQNDIHS-----PHVTVYESLLFSAWLRLSSDI---DSKTRKM 981
SG P +A+ R + IH P ++V E++ + L ++ +
Sbjct: 63 SGSPL-KASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLR- 120
Query: 982 FVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
++ ++L+ V Q++ + IA L ++ +DEP+S L +
Sbjct: 121 -AKNLLRELQLDADNVTR----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEK 175
Query: 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1088
I++ +R+ V C ++ +A + + + R GQ +
Sbjct: 176 ETEILLDIIRDL--KAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 4e-05
Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 4/160 (2%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATF 939
+Q L +VS G + ++G SGAGK+TL+ + + T G + + G +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLTTLSN 74
Query: 940 ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM 999
+ ++ Q + H + S + L ++D+ + +V +L+ L L +
Sbjct: 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKH 134
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
P LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 135 DSYPS--NLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-05
Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 28/225 (12%)
Query: 871 MKAQGIEEDRLQ--LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDIS 928
+++ G+ + ++ +LR+++ +PG + A++G SGAGKTTL+ ++ G + G E
Sbjct: 384 LESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRP 443
Query: 929 ISG---YPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDE 985
SG PKN + Y + VT+ E + SKT +
Sbjct: 444 DSGKVEVPKNTVSALIPGEYEPEFG----EVTILE------------HLRSKTGDLNAAV 487
Query: 986 VMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
+++ L++A++ LST Q++R +A L P+++ +DE + LD A
Sbjct: 488 --EILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVR 545
Query: 1046 VMRTVRNTV-DTGRTVVCTIHQPSIDIFEAF--DELLLMKRGGQV 1087
V R + + G T++ H+P ++ A D L+L+ G
Sbjct: 546 VARKISELAREAGITLIVVTHRP--EVGNALRPDTLILVGYGKVP 588
|
Length = 593 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-05
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1067
LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H P
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204
Query: 1068 SIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAV----PGVPRITNGYNPATWM 1123
+ A E ++ R G+++ P ++ + E V G + +G+ A M
Sbjct: 205 QV---AAQAERVIEIRDGEIV-RNPPAQEKVNVAGGTEPVVNTASGWRQFVSGFREALTM 260
|
Length = 648 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 5e-05
Identities = 54/236 (22%), Positives = 92/236 (38%), Gaps = 38/236 (16%)
Query: 874 QGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYTEGDISISGY 932
+ + ++DVS R G + + GV+G G++ L++ ++G RK G I ++G
Sbjct: 264 SVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP---ASGRILLNGK 320
Query: 933 PKNQATFARVS-----GYCEQNDIH---SPHVTVYESLL--------FSAWLRLSSD-ID 975
R Y ++ +++ E+L+ FS L I
Sbjct: 321 DVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIR 380
Query: 976 SKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035
R++ E D+ P A LS +++L +A EL P ++ +PT
Sbjct: 381 KFARELI--EEFDVRAPSPDAPA-------RSLSGGNQQKLILARELARRPDLLIAAQPT 431
Query: 1036 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
GLD A + + D G+ V+ I E DE+L + VIY G
Sbjct: 432 RGLDVGAIEFIHERLLELRDAGKAVLL--------ISEDLDEILELSDRIAVIYEG 479
|
Length = 501 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLT-GKIKYCGHEFKE 239
+ILK V+ +K + L+GP G+GK+TL + G ++T G+I + G + +
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYEVTEGEILFKGEDITD 68
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 5e-05
Identities = 42/163 (25%), Positives = 60/163 (36%), Gaps = 55/163 (33%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
+ VS + G L+G SG GK+TL ++ G + T G+I G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE--EPTSGEILFEG------------ 74
Query: 944 GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLP 1003
DI +++ + V++L+E VGLP
Sbjct: 75 ----------------------------KDITKLSKEERRERVLELLE-------KVGLP 99
Query: 1004 GVDG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
LS QR+R+ IA L NP +I DEP S LD
Sbjct: 100 EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 29/201 (14%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGY------PKN 935
++L+ ++ G + A+MG +G+GK+TL V+AG EGDI G P+
Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80
Query: 936 QATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKM----------FVDE 985
+A + Q I P V+ + +LRL+ + K + + ++E
Sbjct: 81 RAHLGIFLAF--QYPIEIPGVSNAD------FLRLAYNSKRKFQGLPELDPLEFLEIINE 132
Query: 986 VMDLVELEP-LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
+ LV ++P + V +G S ++KR I + + + +DE SGLD A
Sbjct: 133 KLKLVGMDPSFLSRNVN----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALK 188
Query: 1045 IVMRTVRNTVDTGRTVVCTIH 1065
I+ + + + +++ H
Sbjct: 189 IIAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 5e-05
Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 32/216 (14%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMAL--AGKLDDDLKLTGKIKYCGHEFKEFV 241
+IL+ VS + S++T ++GP G GK+T L L +L+ ++++ G++++
Sbjct: 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQN----- 75
Query: 242 PQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
I + ++ + + +M L + Y+ ++ K G +P EID
Sbjct: 76 -------IYERRVNLNRLRRQVSMVHPKPNLFPMSVYD---NVAYGVKIVGWRPKLEIDD 125
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
++ +AL + + LD+ SGGQ++R+ L K
Sbjct: 126 IVE-SALKDADLWDEIKHKIHKSALDL--------------SGGQQQRLCIARALAVKPK 170
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV 397
VLLMDE GLD + ++ ++ + E+T ++
Sbjct: 171 VLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVI 206
|
Length = 261 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 1005 VDGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
LS +++ +A+ L + + +DE GLD R + + + G V
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 1061 VCTIHQPSIDIFEAFDELLLMKR 1083
+ H P ++ E D+L+ +K+
Sbjct: 135 IVITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-05
Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 25/199 (12%)
Query: 898 ALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA--RVSGYCEQNDIHSPH 955
AL+G +G+GK+TL +L G TEG+I + G P + + + R Q D P
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD---P- 424
Query: 956 VTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM-------VGLPGVDGL 1008
V + ++ L A + L DI + V + ++ V+L L ++ +G G + L
Sbjct: 425 VVLADTFL--ANVTLGRDISEEQ----VWQALETVQLAELARSLPDGLYTPLGEQG-NNL 477
Query: 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068
S Q++ L +A LV P I+ +DE T+ +D+ + + + V T+V H+ S
Sbjct: 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLS 536
Query: 1069 IDIFEAFDELLLMKRGGQV 1087
I EA D +L++ RG V
Sbjct: 537 T-IVEA-DTILVLHRGQAV 553
|
Length = 592 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-05
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 26/169 (15%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYTEGDISISGYPKNQATF 939
++++S RPG L+G SG+GK+T L+ ++ ++G+I G P +
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-------SQGEIWFDGQPLHNLNR 354
Query: 940 ARVSGYCEQ--------NDIHSPHVTVYESLLFSAWLRL-SSDIDSKTRKMFVDEVMDLV 990
++ + N +P + V + + LR+ + + R+ V VM+ V
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
L+P T P S QR+R+ IA L+ PS+I +DEPTS LD
Sbjct: 413 GLDPETRHR--YPA--EFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-05
Identities = 58/259 (22%), Positives = 103/259 (39%), Gaps = 61/259 (23%)
Query: 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCG-------- 234
+ L +++ + + ++GP GAGK+TL G L +G + G
Sbjct: 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENI 73
Query: 235 HEFKEFVPQRTCAYISQN-DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGI 293
E ++FV + QN D TV + + F LG+ ++ R A
Sbjct: 74 REVRKFV-----GLVFQNPDDQIFSPTVEQDIAFGPINLGLDE-----ETVAHRVSSA-- 121
Query: 294 KPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTG 353
L +LGL+ + D++ +SGG+KKRV
Sbjct: 122 ---------------------------LHMLGLE-----ELRDRVPHHLSGGEKKRVAIA 149
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSL--LQPAPEAYDLFD 411
++ +VL++DE + GLD ++ ++ + +T I S L PE + D
Sbjct: 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPE---MAD 206
Query: 412 NIILLSEGQIVYQGPREKV 430
I ++ +G+IV G E++
Sbjct: 207 YIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-05
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQP 402
SGGQK+RV +L ++++ DE ++ LD +I K M + T++S+
Sbjct: 144 SGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVD-LRKTRKKTLISITHD 202
Query: 403 APEAYDLFDNIILLSEGQIVYQGPREKVL---EFFEYMGFKCPDRKGVADFLQEVTSKKD 459
EA L D +I+ SEG+++ QG +++L E E P ++ L+ + +
Sbjct: 203 MDEAI-LADKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSKKLKGIDPTYN 261
Query: 460 QEQ 462
+E+
Sbjct: 262 EEE 264
|
Length = 271 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 32/203 (15%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG---------- 931
L V+ G AL+G SG+GK+T++ +L + EG I + G
Sbjct: 18 GLNFSVA----AGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGRN 71
Query: 932 ---YPKNQATFARVS---GYCEQNDIHSPHVTVYESLLFSAWLRLS-SDIDSKTRKMFVD 984
P ++ ++ G Q+ PH TV +++ + L L + +++ R M
Sbjct: 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAM--- 128
Query: 985 EVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
E++D+V L + M P LS Q++R+ IA L P ++ DE TS LD
Sbjct: 129 ELLDMVGLADKADHM---PA--QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVG 183
Query: 1045 IVMRTVRN-TVDTGRTVVCTIHQ 1066
V+ +R + T++ H+
Sbjct: 184 EVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-05
Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 983 VDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
V +DL+E+ L++ + + LS +++R+ +A +L P + DEPT LD +
Sbjct: 146 VGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQT 203
Query: 1043 AAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLV 1101
A +V + V +G ++V T H P + I + D+ + ++ G++ G +
Sbjct: 204 AKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLEN-GEIKEEGTPDEVVAVFM 261
Query: 1102 EYFEAV 1107
E V
Sbjct: 262 EGVSEV 267
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 6e-05
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQ 401
+SGGQ++RV+ L +VLL DE ++ LD ++ + M+Q+ E T+V +
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTH 210
Query: 402 PAPEAYDLFDNIILLSEGQIVYQGPREKVL 431
A + ++I L +G+I +G E++
Sbjct: 211 EMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
|
Length = 257 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 31/198 (15%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVL--AGRKTGGYT-EGDISISGYP----KN 935
+L VS F +T+LMG +G+GKTT + L K GY GD+ + G ++
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 936 QATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSK----------TRKMFVDE 985
F R G Q P +++ +++L A +R + K T D
Sbjct: 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 986 VMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
V D + P LS Q++ L +A L NP ++ +DEPTS LD
Sbjct: 153 VKDRLSDSPFR-----------LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEK 201
Query: 1046 VMRTVRNTVDTGRTVVCT 1063
+ +R+ D ++ T
Sbjct: 202 IEEFIRSLADRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 30/191 (15%)
Query: 867 MPAEMKAQGIE--EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGG 921
M ++K +G+ + Q+L++++ F +TA++G SG GK+TL+ L +G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 922 YTEGDISISG---YPKNQ--ATFARVSGYCEQNDIHSPHVTVYESLLF-------SAWLR 969
EG + + Y N + G Q P ++++++ F +A R
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSR 119
Query: 970 LSSDIDSKTRKMFV-DEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSI 1028
L ++ R+ + DEV D + L LS Q++RL IA L P +
Sbjct: 120 LDEVVEKSLRQAALWDEVKDNLHKSGL-----------ALSGGQQQRLCIARVLAIEPEV 168
Query: 1029 IFMDEPTSGLD 1039
I MDEP S LD
Sbjct: 169 ILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-05
Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 35/215 (16%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L+DVS G T+++G +G+GK+T+ ++ G + G+I + F ++
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLR 82
Query: 944 ---GYCEQNDIHSPHVTVYESLL-FSAWLRLSSD-IDSKTRKMFVDEVMDLVEL------ 992
G QN P S++ + L + + V E + V++
Sbjct: 83 KHIGIVFQN----PDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY 138
Query: 993 EPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
EP + LS Q++R+ IA L NPS+I +DE TS LD A ++ VR
Sbjct: 139 EP-----------NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRK 187
Query: 1053 T-VDTGRTVVCTIHQPSIDIFEAF--DELLLMKRG 1084
+ T++ H D+ EA D +++M +G
Sbjct: 188 VKSEHNITIISITH----DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 60/267 (22%), Positives = 97/267 (36%), Gaps = 82/267 (30%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCG-----HEFKEF 240
L +SG V+ + L+GP GAGK+TLL +AG +G I++ G E
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGSGSIQFAGQPLEAWSATEL 70
Query: 241 VPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEID 300
R AY+SQ M V + +PD
Sbjct: 71 ARHR--AYLSQQQTPPFAMPVWHYLTLH-------------------------QPDKTR- 102
Query: 301 AYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV---SGGQKKRVTTGEML- 356
L + V L LD D++ R SGG+ +RV ++
Sbjct: 103 ----TELL---------NDVAGALALD--------DKLGRSTNQLSGGEWQRVRLAAVVL 141
Query: 357 -VGP-----AKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVS------LLQPAP 404
+ P ++LL+DE LD + + + + + + ++S L+ A
Sbjct: 142 QITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNHTLRHAH 200
Query: 405 EAYDLFDNIILLSEGQIVYQGPREKVL 431
A+ LL G+++ G RE+VL
Sbjct: 201 RAW-------LLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 7e-05
Identities = 51/215 (23%), Positives = 90/215 (41%), Gaps = 22/215 (10%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L+ + G + AL+G +GAGK+TLM ++AG G + I G P + T A+
Sbjct: 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPCARLTPAKAH 84
Query: 944 GY----CEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM 999
Q + P+++V E++LF L S + + +L
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASMQK---------MKQLLAALGCQ 131
Query: 1000 VGLPGVDG-LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
+ L G L R+ + I L+ + I+ +DEPT+ L + +R + G
Sbjct: 132 LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGV 191
Query: 1059 TVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093
+V H+ +I + D + +M R G + +G
Sbjct: 192 GIVFISHKLP-EIRQLADRISVM-RDGTIALSGKT 224
|
Length = 510 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 8e-05
Identities = 61/256 (23%), Positives = 99/256 (38%), Gaps = 62/256 (24%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
+ LK +S + T LLGP GAGK+TLL+ L G L G++K G E V
Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI---YLPQRGRVKVMGRE----VNA 71
Query: 244 RTCAYI-SQNDLHFGE-------MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKP 295
++ S+ L F + TV + + F +G+ E+ RR +EA
Sbjct: 72 ENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDK-----DEVERRVEEA---- 122
Query: 296 DPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEM 355
LK + + D+ +S GQKKRV +
Sbjct: 123 -------------------------LKAVRMWDFR-----DKPPYHLSYGQKKRVAIAGV 152
Query: 356 LVGPAKVLLMDEISTGLDSS---TTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412
L V+++DE LD T +I + + T++ A + D
Sbjct: 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-----QGKTVIVATHDVDLAAEWADQ 207
Query: 413 IILLSEGQIVYQGPRE 428
+I+L EG+++ +G +
Sbjct: 208 VIVLKEGRVLAEGDKS 223
|
Length = 274 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 57/249 (22%), Positives = 107/249 (42%), Gaps = 62/249 (24%)
Query: 193 VKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQ 251
V+ +LGP GAGK+TLL +AG L +G + G + P +R + + Q
Sbjct: 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 252 -NDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKAT--AL 308
N+L F +TV + + G+ P +++A + A+
Sbjct: 79 ENNL-FSHLTVAQNIGL------------------------GLNPGLKLNAAQREKLHAI 113
Query: 309 AGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEI 368
A Q +G++ + G +SGGQ++RV LV +LL+DE
Sbjct: 114 ARQ------------MGIEDLLARLPGQ-----LSGGQRQRVALARCLVREQPILLLDEP 156
Query: 369 STGLDSSTTFQICKYMKQMVHVLEITTI-VS-----LLQPAPEAYDLFDNIILLSEGQIV 422
+ LD + ++ + Q+ ++T + VS + AP + +++++G+I
Sbjct: 157 FSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRS-------LVVADGRIA 209
Query: 423 YQGPREKVL 431
+ GP +++L
Sbjct: 210 WDGPTDELL 218
|
Length = 232 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 8e-05
Identities = 59/247 (23%), Positives = 97/247 (39%), Gaps = 64/247 (25%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
+LK+++ ++ M + G G+GKT+LLM + G+L+ GKIK+ G F Q
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSGR--ISFSSQ- 105
Query: 245 TCAYISQNDLHFGEMTVRETMDFSGRCLGVG-TRYEMLAEISRREKEAGIKPDPEIDAYM 303
++I T++E + F GV Y + + + E I PE D
Sbjct: 106 -FSWIMPG-------TIKENIIF-----GVSYDEYRYKSVVKACQLEEDITKFPEKD--- 149
Query: 304 KATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVL 363
T L + +SGGQ+ R++ + A +
Sbjct: 150 --------NTVLGEGGIT--------------------LSGGQRARISLARAVYKDADLY 181
Query: 364 LMDEISTGLDSSTTFQI-----CKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418
L+D LD T +I CK M +L +T+ + L+ A D I++L E
Sbjct: 182 LLDSPFGYLDVFTEKEIFESCVCKLMANKTRIL-VTSKMEHLKKA-------DKILILHE 233
Query: 419 GQIVYQG 425
G + G
Sbjct: 234 GSSYFYG 240
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 9e-05
Identities = 63/259 (24%), Positives = 99/259 (38%), Gaps = 61/259 (23%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF---- 240
+L V V+ + L+GP GAGKTTLL A+ G L G + G + +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARA 74
Query: 241 -------VPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGI 293
VPQ T L F E VR+ ++ GR R++ E R E +
Sbjct: 75 ASRRVASVPQDT-------SLSF-EFDVRQVVEM-GRTPHRS-RFDTWTETDRAAVERAM 124
Query: 294 KPDPEIDAYMKATALAGQK-TSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTT 352
A + TSL SGG+++RV
Sbjct: 125 -------ERTGVAQFADRPVTSL---------------------------SGGERQRVLL 150
Query: 353 GEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412
L VLL+DE + LD + + + ++++V + T V+ + A D
Sbjct: 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD--DGKTAVAAIHDLDLAARYCDE 208
Query: 413 IILLSEGQIVYQGPREKVL 431
++LL++G++ GP VL
Sbjct: 209 LVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 9e-05
Identities = 57/253 (22%), Positives = 100/253 (39%), Gaps = 50/253 (19%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMAL-------AGKLDDDLKLTGKIKYCGHEFK 238
+ D + + +++G G+GK+T + L AG++ D + K E +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQS--PVELR 66
Query: 239 EFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
E V ++ + Q F MT+ + LG E R+EK
Sbjct: 67 E-VRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-------PEQERKEK--------- 109
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVG 358
A + +LKL+GL+ + +SGG ++RV L
Sbjct: 110 -----------------ALE-LLKLVGLEEYEH-----RYPDELSGGMQQRVGLARALAA 146
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418
+LLMDE + LD + +K++ L+ TIV + EA + D I+++
Sbjct: 147 EPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ-KTIVFITHDLDEAIRIGDRIVIMKA 205
Query: 419 GQIVYQGPREKVL 431
G+IV G +++L
Sbjct: 206 GEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 9e-05
Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 35/203 (17%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYTEGDISISGYPKN-- 935
Q L DVS +TA++G SG GK+T + + + EG+++ G KN
Sbjct: 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG--KNVY 109
Query: 936 -----QATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRL---SSDIDSKT-----RKMF 982
R G Q P ++Y+++ + L++ DID + R
Sbjct: 110 DADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYG--LKIQGYDGDIDERVEESLRRAAL 166
Query: 983 VDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
DEV D ++ G+D LS Q++RL IA + +P +I MDEP S LD A
Sbjct: 167 WDEVKDQLDSS----------GLD-LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVA 215
Query: 1043 AAIVMRTVRNTVDTGRTVVCTIH 1065
+ + + + TVV H
Sbjct: 216 TSKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 67/265 (25%), Positives = 109/265 (41%), Gaps = 72/265 (27%)
Query: 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFK---- 238
++ L VS V+P + LLG GAGK+TL+ L+G D +G+I G
Sbjct: 21 VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSP 77
Query: 239 --------EFVPQRTCAYISQNDLH-FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREK 289
V Q +L ++V E + F GR E +RR
Sbjct: 78 RDALAAGIATVHQ---------ELSLVPNLSVAENI-FLGR------------EPTRR-- 113
Query: 290 EAGIKPDPEID-AYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKK 348
G+ ID M+ A +L LGLDI DT+VGD +S Q++
Sbjct: 114 -FGL-----IDRKAMRRRARE----------LLARLGLDIDPDTLVGD-----LSIAQRQ 152
Query: 349 RVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQM----VHVLEITTIVSLLQPAP 404
V L A+VL++DE + L T ++ ++++ V ++ I+ +
Sbjct: 153 MVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL------D 206
Query: 405 EAYDLFDNIILLSEGQIVYQGPREK 429
E +++ D I +L +G++V P
Sbjct: 207 EVFEIADRITVLRDGRVVGTRPTAA 231
|
Length = 500 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 63/268 (23%), Positives = 108/268 (40%), Gaps = 68/268 (25%)
Query: 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTT-------LLMALAGK-LDDDLKLTGKI 230
KKRK+ + DVS V + LLGP GAGKTT L+ +GK L DD +T
Sbjct: 15 KKRKV--VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP 72
Query: 231 KYCGHEFKEFVPQRT---CAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLA-EISR 286
+ +R Y+ Q F ++TV + + M EI
Sbjct: 73 MH----------KRARLGIGYLPQEASIFRKLTVEDNI--------------MAVLEIRE 108
Query: 287 REKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQ 346
++ + A +K L D +L+ + D+ + SGG+
Sbjct: 109 KDLKK-----------------AERKEEL--DALLEEFHITHLRDSK-AYSL----SGGE 144
Query: 347 KKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLL--QPAP 404
++RV L K +L+DE G+D I ++++ L+ I L+
Sbjct: 145 RRRVEIARALAANPKFILLDEPFAGVDPIAVIDI----QRIIKHLKDRGIGVLITDHNVR 200
Query: 405 EAYDLFDNIILLSEGQIVYQGPREKVLE 432
E D+ D ++S+G+++ +G E+++
Sbjct: 201 ETLDICDRAYIISDGKVLAEGSPEEIVN 228
|
Length = 243 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTI-VSLL 400
+SGGQK+RV ++ K+L++DE + GLD +I +K++ +T I VS
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVS-- 202
Query: 401 QPAPEAYDLFDNIILLSEGQIVYQG-PRE--KVLEFFEYMGFKCP 442
+ L D II++++G+ QG PRE K +E E +G P
Sbjct: 203 HSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAVP 247
|
Length = 287 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 56/212 (26%), Positives = 102/212 (48%), Gaps = 26/212 (12%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ------- 936
L +V+ +PG + + G +G+GK+TL+ ++ ++ +EGDI P +
Sbjct: 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLI--QRHFDVSEGDIRFHDIPLTKLQLDSWR 388
Query: 937 ATFARVSGYCEQNDIHSPHV---TVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE 993
+ A VS +P + TV ++ +I+ R V + D++ L
Sbjct: 389 SRLAVVS--------QTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHD--DILRLP 438
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
+ VG GV LS Q++R++IA L+ N I+ +D+ S +D R ++ +R
Sbjct: 439 QGYDTEVGERGV-MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQW 497
Query: 1054 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085
+ GRTV+ + H+ S + EA E+L+M+ G
Sbjct: 498 GE-GRTVIISAHRLSA-LTEA-SEILVMQHGH 526
|
Length = 569 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-04
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 22/172 (12%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT 938
D L+ + +S R G L+G SG+GK+TL L ++G+I G + +
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP---SQGEIRFDGQDIDGLS 354
Query: 939 FARVSGYCEQNDIH----------SPHVTVYESLLFSAWLRL-SSDIDSKTRKMFVDEVM 987
+ + + SP +TV + + LR+ + + R V E +
Sbjct: 355 RKEMRPL--RRRMQVVFQDPYGSLSPRMTVGQ--IIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 988 DLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+ V L+P P S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 411 EEVGLDP--ATRNRYP--HEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1067
LS +++RL A L+ P +F+DE TS LD + + + ++ + G TV+ H+P
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVGHRP 148
Query: 1068 SIDIFEAFDELLLMKRGGQ 1086
S+ F D +L + G
Sbjct: 149 SLWKF--HDRVLDLDGEGG 165
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 28/205 (13%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKNQATFARVSGYCEQNDI 951
G LT ++G G GK++L+ + G + G P +AT +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 952 HSP---HVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM-------VG 1001
P + TV E++ F S + + K V D L+P + + +G
Sbjct: 86 QKPWLLNATVEENITFG------SPFNKQRYKA----VTDACSLQPDIDLLPFGDQTEIG 135
Query: 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRT 1059
G++ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT
Sbjct: 136 ERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRT 194
Query: 1060 VVCTIHQPSIDIFEAFDELLLMKRG 1084
+V H+ + D ++ MK G
Sbjct: 195 LVLVTHK--LQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 32/178 (17%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRK-TGGYTEGDISISG 931
+ + L+ + F +TAL+G SG GK+T + D++ G TG + +I
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76
Query: 932 YPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFV-------- 983
++ + G Q P ++YE++++ LRL+ D V
Sbjct: 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAA 133
Query: 984 --DEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
DEV D + L+ LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 134 IWDEVKDHLHESALS-----------LSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 9/163 (5%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATF 939
++ ++ +S R G A++G +G+GK+TL +LAG T G++ I +P + +
Sbjct: 25 TVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG--MIEPTSGELLIDDHPLHFGDY 82
Query: 940 ARVSGYCE---QNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT 996
+ S Q+ S + S + LRL++D++ + R+ + E + V L P
Sbjct: 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP-- 140
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+ P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 141 DHASYYPHM--LAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 23/163 (14%)
Query: 889 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQ 948
G + ++G +G GKTT + +LAG EGDI I VS Y Q
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKP--DEGDIEIEL--------DTVS-YKPQ 68
Query: 949 NDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGL 1008
TV + LL S D T F E+ +++E + + V L
Sbjct: 69 YIKADYEGTVRD-LLSSI------TKDFYTHPYFKTEIAKPLQIEQILDREV-----PEL 116
Query: 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
S + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 117 SGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 28/165 (16%)
Query: 896 LTALMGVSGAGKTTLM-------DVLAGRKTGGYTEGD-ISISGYPKNQATFARVSGYCE 947
+TA++G SG GK+T + D++ T G D I G ++ + G
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVF 126
Query: 948 QNDIHSPHVTVYESLLFSAWL-------RLSSDIDSKTRKMFV-DEVMDLVELEPLTNAM 999
Q P ++++++ + L +L ++ RK + DEV D ++ NA+
Sbjct: 127 QKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLD----KNAL 181
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 -------GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 56/237 (23%), Positives = 95/237 (40%), Gaps = 63/237 (26%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
L+D++ ++ + ++LGP G GKTTLL +AG + G I G + +R
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAER 72
Query: 245 TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMK 304
+ QN+ V++ + F + LA + + ++
Sbjct: 73 --GVVFQNEGLLPWRNVQDNVAFGLQ----------LAGVEKMQRLE------------- 107
Query: 305 ATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR--GVSGGQKKRVTTGEMLVGPAKV 362
+A Q +LK +GL+ G + R +SGGQ++RV L ++
Sbjct: 108 ---IAHQ--------MLKKVGLE-------GAEKRYIWQLSGGQRQRVGIARALAANPQL 149
Query: 363 LLMDEISTGLDSSTTFQICKYMKQMVH-----VLEIT----------TIVSLLQPAP 404
LL+DE LD+ T Q+ + ++ VL IT T + LL P P
Sbjct: 150 LLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGP 206
|
Length = 255 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTI 396
QM SGGQ +++ +L ++++DE + GLD + Q+ + +K + E TI
Sbjct: 145 QM----SGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL-QTDENKTI 199
Query: 397 VSLLQPAPEAYDLFDNIILLSEGQIVYQG-PRE 428
+ + E D +I++ EG IV Q P+E
Sbjct: 200 ILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232
|
Length = 286 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 38/244 (15%)
Query: 184 QILKDVSGLVKPSRMTL-LLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP 242
Q L D++ L P TL LLGP GAGK++LL L E +P
Sbjct: 16 QALFDIT-LDCPEGETLVLLGPSGAGKSSLLRVL-------------------NLLE-MP 54
Query: 243 QRTCAYISQNDLHFGE-MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
+ I+ N F + + + D V +Y + ++ +E I+A
Sbjct: 55 RSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENL--------IEA 106
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
+ L+ + + +LK L L D+ +SGGQ++RV L+ +
Sbjct: 107 PCRVLGLSKDQALARAEKLLKRLRL-----KPYADRYPLHLSGGQQQRVAIARALMMEPQ 161
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421
VLL DE + LD T QI +K++ IT ++ + A ++ + G I
Sbjct: 162 VLLFDEPTAALDPEITAQIVSIIKELAET-GITQVI-VTHEVEVARKTASRVVYMENGHI 219
Query: 422 VYQG 425
V QG
Sbjct: 220 VEQG 223
|
Length = 242 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 23/164 (14%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP----KNQAT 938
+L ++S R G + G SG GK+TL+ ++A + T G + G K +
Sbjct: 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDISTLKPEIY 79
Query: 939 FARVSGYCEQNDIHSPHV---TVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL 995
+VS YC Q +P + TVY++L+F +R +F+D DL L
Sbjct: 80 RQQVS-YCAQ----TPTLFGDTVYDNLIFPWQIRN----QQPDPAIFLD---DLERFA-L 126
Query: 996 TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+ ++ + LS +++R+++ L P ++ +DE TS LD
Sbjct: 127 PDTILTKN-IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 23/191 (12%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATF 939
++Q L +VS G + L+G +GAGKTTL+ L G T G I G
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDITDWQT 74
Query: 940 AR-----VSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
A+ V+ E + S +TV E+L + R F + + + EL P
Sbjct: 75 AKIMREAVAIVPEGRRVFS-RMTVEENLAMGGFF--------AERDQFQERIKWVYELFP 125
Query: 995 -LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
L + G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T
Sbjct: 126 RLHERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDT 179
Query: 1054 VDTGRTVVCTI 1064
++ R TI
Sbjct: 180 IEQLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 2e-04
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1067
LS Q++R+ +A + P II +DE TS LD +MR + + + V +I
Sbjct: 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITH- 199
Query: 1068 SIDIFEAFDELLLMKRGGQVIYAGP--LGRQSQKLVEYFEAVPGVPRI-----TNGYN-P 1119
+D + D +L+MK G + A P L S+ +VE VP + NG++ P
Sbjct: 200 DLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVEIGLDVPFSSNLMKDLRKNGFDLP 259
Query: 1120 ATWMLE 1125
++ E
Sbjct: 260 EKYLSE 265
|
Length = 277 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 59/256 (23%), Positives = 107/256 (41%), Gaps = 42/256 (16%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV 241
K Q L D++ ++ +++T L+G G GK+T L D K+ G ++ G + K
Sbjct: 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVK--- 70
Query: 242 PQRTCAYISQNDLHFGEMTVRET--MDFSGRCLGVGTRYEMLAEISRREKEAG-IKPDPE 298
D+ + +R+ M F + V + YE IS K G IK E
Sbjct: 71 ---------NQDV----VALRKNVGMVFQQPNVFVKSIYE---NISYAPKLHGMIKNKDE 114
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVG 358
+A L D + K+ + D + Q +SGGQ++R+ L
Sbjct: 115 EEA-------------LVVDCLQKVGLFEEVKDKL--KQNALALSGGQQQRLCIARALAI 159
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDL-----FDNI 413
K+LL+DE ++ LD ++ I + +K++ H L + + +Q D +
Sbjct: 160 KPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGEL 219
Query: 414 ILLSEGQIVYQGPREK 429
I E + ++ P+++
Sbjct: 220 IEFGESKEFFENPKQE 235
|
Length = 246 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-04
Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 955 HVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014
++++YE++ F D+ + +DE ++ + + TN VG P LS Q++
Sbjct: 1309 NMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTN--VG-PYGKSLSGGQKQ 1365
Query: 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQ 1066
R+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D +T++ H+
Sbjct: 1366 RIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 32/162 (19%)
Query: 896 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YTEGDISISGYPKNQATFARVSGY 945
+TA++G SG GK+T +++++ KT G Y + +I Y + V G
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR-TNV-GM 109
Query: 946 CEQNDIHSPHVTVYESLLFSAWL------RLSSDIDSKTRKMFV--DEVMDLVELEPLTN 997
Q P ++Y+++ + + + +I K+ + DE+ D + N
Sbjct: 110 VFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLH----DN 164
Query: 998 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
A GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 165 AY-------GLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 22/177 (12%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYTEGDISISGYPKNQAT 938
Q L++++ + +TAL+G SG GK+T + + + G + EG+I + +P N
Sbjct: 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HPDNVNI 87
Query: 939 FARVSGYCE---------QNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDL 989
+ E Q P +++E++ + +R K R + + V +
Sbjct: 88 LSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR-----GVKRRSILEERVENA 141
Query: 990 VELEPLTNAMVGLPG--VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
+ L + + G LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 142 LRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 60/215 (27%), Positives = 90/215 (41%), Gaps = 35/215 (16%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTE---GDISISGY---PKNQA 937
L DVS + G +++G +G+GK+T + R G E G I I G +N
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTV-----RLIDGLLEAESGQIIIDGDLLTEENVW 77
Query: 938 TFARVSGYCEQN-DIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV------ 990
G QN D TV + + F + I + K V+E ++LV
Sbjct: 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLE---NKGIPHEEMKERVNEALELVGMQDFK 134
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
E EP LS Q++R+ IA + P II +DE TS LD +++T+
Sbjct: 135 EREPAR-----------LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTI 183
Query: 1051 RNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
+ D TV+ H +D D +L+MK G
Sbjct: 184 KGIRDDYQMTVISITH--DLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 36/258 (13%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMAL--------AGKLDDDLKLTGKIKYC-G 234
LK VS + +T L+GP G GK+T L L A ++D ++L G+ Y G
Sbjct: 59 HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118
Query: 235 HEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIK 294
E + + S N ++RE + + R G + + R +K+A
Sbjct: 119 VNLVELRKRVGMVFQSPNPF---PKSIRENISYGPRKHGDINTGLLARLLGRDDKDA--- 172
Query: 295 PDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGE 354
D ++ ++ AL + D L G+SGGQ++R+
Sbjct: 173 EDELVERSLRQAALWDEVNDRLDDNAL-------------------GLSGGQQQRLCIAR 213
Query: 355 MLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNII 414
L +V+LMDE ++ LD T +I ++++ + + +Q A D +
Sbjct: 214 CLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISD--QTAV 271
Query: 415 LLSEGQIVYQGPREKVLE 432
L+ G++V +K+ E
Sbjct: 272 FLTGGELVEYDDTDKIFE 289
|
Length = 305 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (103), Expect = 3e-04
Identities = 62/291 (21%), Positives = 109/291 (37%), Gaps = 60/291 (20%)
Query: 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHE 236
P+ + L D+ VK T L+G G+GK+TLL L G L
Sbjct: 13 PNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP-------------- 58
Query: 237 FKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIK-- 294
++ + G++ V T EI K+ G+
Sbjct: 59 -------------TEGKVTVGDIVVSST--------------SKQKEIKPVRKKVGVVFQ 91
Query: 295 -PDPEI--DAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG------DQMRRGVSGG 345
P+ ++ + +K A Q + + K+ + MVG ++ +SGG
Sbjct: 92 FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKL---EMVGLADEFWEKSPFELSGG 148
Query: 346 QKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPE 405
Q +RV +L +VL++DE + GLD ++ + + + + +V+ L +
Sbjct: 149 QMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM--DD 206
Query: 406 AYDLFDNIILLSEGQIVYQGPREKV---LEFFEYMGFKCPDRKGVADFLQE 453
D D + LL +G I+ G V ++F + P AD LQ+
Sbjct: 207 VADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQ 401
+SGGQ++R+ L +VLL DE + LD T +I ++ + TIV +
Sbjct: 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDM---TIVLVTH 203
Query: 402 PAPEAYDLFDNIILLSEGQIVYQGPREKVL 431
+A + D + L +GQIV GP +V
Sbjct: 204 FPQQAARISDYVAFLYKGQIVEWGPTREVF 233
|
Length = 250 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 57/212 (26%), Positives = 88/212 (41%), Gaps = 26/212 (12%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYTEGDISISGYPKNQATFARV 942
L D+S G TAL+G +G+GK+T+ ++ G I++ G T +
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82
Query: 943 S---GYCEQN-DIHSPHVTVYESLLFSAWLRL--SSDIDSKTRKMFVDEVM-DLVELEPL 995
G QN D TV + + F R ++ R + D M D ++ EP
Sbjct: 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP- 141
Query: 996 TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1054
LS Q++R+ IA L P II +DE TS LD +++ +R
Sbjct: 142 ----------ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKK 191
Query: 1055 DTGRTVVCTIHQPSIDIFEA--FDELLLMKRG 1084
TV+ H DI EA D++L++ G
Sbjct: 192 KNNLTVISITH----DIDEANMADQVLVLDDG 219
|
Length = 282 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 195 PSRMTLLLGPPGAGKTTLLMALAGKLDDD 223
P + L++GPPG+GKTTL ALA +L
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPP 29
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 40/190 (21%)
Query: 896 LTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDI---- 951
+TAL+G SG GK+T + L + EG I I G + + Y DI
Sbjct: 35 ITALIGPSGCGKSTFLRTL--NRMNDLVEG-IKIEG----NVIYEGKNIYSNNFDILELR 87
Query: 952 -------HSPH---VTVYESLLFSAWLRLSSD---IDSKTRKMFV-----DEVMDLVELE 993
+P+ +++Y+++ + + + D +D + +EV D +
Sbjct: 88 RKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLN-- 145
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
TNA+ LS Q++RL IA L P++I MDEPTS LD + + + N
Sbjct: 146 --TNAL-------SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL 196
Query: 1054 VDTGRTVVCT 1063
++ ++ T
Sbjct: 197 KESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 41/229 (17%)
Query: 198 MTLLLGPPGAGKTTLLMAL--AGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLH 255
+T L+GP G GK+T L L L + +K+ G + Y G I N+
Sbjct: 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKN------------IYSNNFD 82
Query: 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSL 315
E+ + M F + + Y+ IS K G K ++D ++ + K++L
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYD---NISYGPKIHGTKDKKKLDEIVEQSLK---KSAL 136
Query: 316 ATDYVLKLLGLDICADTMVGDQMRR---GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGL 372
+ V D++ +SGGQ++R+ L V+LMDE ++ L
Sbjct: 137 WNE---------------VKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSAL 181
Query: 373 DSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421
D +T +I + ++++ E TI+ + +A + D G I
Sbjct: 182 DPISTGKI---EELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCI 227
|
Length = 254 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 999 MVGLP------GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
+VGL LS Q++R+ +A L P + DEPT+GLD + ++ N
Sbjct: 151 LVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDN 210
Query: 1053 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
G+T++ H +D + + + + G++I G
Sbjct: 211 LNKQGKTIILVTH--DLDNVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 23/189 (12%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
+L ++S PG L+G +G+GK+TL+ TEGDI I G N
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGDIQIDGVSWNSVPL--- 72
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGL 1002
Q + V + +FS R + D K + +V + V L+ +
Sbjct: 73 -----QKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQ---F 124
Query: 1003 PG------VDG---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
PG VDG LS ++ + +A +++ I+ +DEP++ LD ++ +T++
Sbjct: 125 PGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQA 184
Query: 1054 VDTGRTVVC 1062
++
Sbjct: 185 FADCTVILS 193
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 55/207 (26%), Positives = 81/207 (39%), Gaps = 56/207 (27%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLT-GKIKYCGHEF----K 238
+ L+DVS + L GP GAGK+TLL + G + + T GKI GH+
Sbjct: 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYG----EERPTRGKILVNGHDLSRLKG 71
Query: 239 EFVP--QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
+P +R + Q+ + TV E + R +G R EI RR E
Sbjct: 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR-----EIRRRVSE------ 120
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR---GVSGGQKKRVTTG 353
VL L+GL + R +SGG+++RV
Sbjct: 121 -----------------------VLDLVGL--------KHKARALPSQLSGGEQQRVAIA 149
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQI 380
+V VLL DE + LD +++I
Sbjct: 150 RAIVNQPAVLLADEPTGNLDPDLSWEI 176
|
Length = 223 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 56/261 (21%), Positives = 105/261 (40%), Gaps = 57/261 (21%)
Query: 187 KDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKY--CGHEFKEFV--- 241
+DVS + P + ++G G+GKTTLL ++G+L D G + Y + ++
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMS 79
Query: 242 -PQR------TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIK 294
+R ++ QN M V + R + +G R+
Sbjct: 80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH---------------- 123
Query: 295 PDPEIDAYMKATALAG---QKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVT 351
Y A A ++ + D + D + R SGG ++R+
Sbjct: 124 -------YGNIRAEAQDWLEEVEIDLDRI---------------DDLPRTFSGGMQQRLQ 161
Query: 352 TGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411
LV +++ MDE + GLD S ++ ++ +V L + ++ A A L D
Sbjct: 162 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLAD 220
Query: 412 NIILLSEGQIVYQGPREKVLE 432
++++ +GQ+V G ++VL+
Sbjct: 221 RLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-04
Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 888 SGVFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYTEGDISISGYPKNQATFARVSGYC 946
G G + ++G +G GKTT + +LAG K +E D+ +S Y K Q G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVS-Y-KPQYISPDYDG-- 416
Query: 947 EQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD 1006
TV + L + S S F E++ + LE L V D
Sbjct: 417 ----------TVEDLL----RSAIRSAFGSS---YFKTEIVKPLNLEDLLERPV-----D 454
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
LS + +R+ IA L + +DEP++ LD IV + +R
Sbjct: 455 ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 9/175 (5%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYTEGDISISGYP-KNQATF 939
Q L D++ +TAL+G SG GK+T + +G + I G KNQ
Sbjct: 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75
Query: 940 A---RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT 996
A V +Q ++ ++YE++ ++ L + + VD + + E +
Sbjct: 76 ALRKNVGMVFQQPNVFVK--SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
+ + LS Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 134 DKLK--QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 5e-04
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 38/186 (20%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEF-KEFVPQR 244
L D+S V P + +++GP GAGKTT++ + GK D G + + G + Q
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQI 74
Query: 245 TCAYIS---QNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
A I Q F +TV E ++ + + +S EK+ I+
Sbjct: 75 ARAGIGRKFQKPTVFENLTVFENLELA-LPRDKSVFASLFFRLSAEEKD-------RIEE 126
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
VL+ +GL AD + G +S GQK+ + G +L+ K
Sbjct: 127 ------------------VLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPK 163
Query: 362 VLLMDE 367
+LL+DE
Sbjct: 164 LLLLDE 169
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 38/191 (19%), Positives = 60/191 (31%), Gaps = 50/191 (26%)
Query: 198 MTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP--QRTCAYISQNDLH 255
+ GP G+GKTTLL LAG L G++ G R Y+
Sbjct: 28 ALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGI 84
Query: 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSL 315
++V E + F E LA + L G
Sbjct: 85 KTTLSVLENLRFWHADHSDEQVEEALARVG----------------------LNG----- 117
Query: 316 ATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSS 375
D+ +S GQ++RV +L+ + ++DE +T LD +
Sbjct: 118 ------------------FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159
Query: 376 TTFQICKYMKQ 386
+ + M
Sbjct: 160 GVARFAEAMAG 170
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMAL--AGKLDDDLKLTGKIKYCGHE 236
LKD++ + +++T L+GP G GK+TLL L L ++ G++ G
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKN 75
|
Length = 253 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 63/270 (23%), Positives = 103/270 (38%), Gaps = 83/270 (30%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF--- 240
IL +S + + ++G GAGK+T+L L D + +G I G + ++
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQ 333
Query: 241 --------VPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAG 292
VPQ T + ND T I +A
Sbjct: 334 SLRRAIGIVPQDTVLF---ND----------------------TIAYN---IKYGRPDAT 365
Query: 293 IKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRG--VSGGQKKRV 350
E+ A +A + SL Y DT VG+ RG +SGG+K+RV
Sbjct: 366 ---AEEVGAAAEAAQIHDFIQSLPEGY-----------DTGVGE---RGLKLSGGEKQRV 408
Query: 351 TTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQ---------MVHVLEITTIVSLLQ 401
++ +L++DE ++ LD+ T I +++ + H L +TI+
Sbjct: 409 AIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRL--STIIDA-- 464
Query: 402 PAPEAYDLFDNIILLSEGQIVYQGPREKVL 431
D II+L G+IV +G E++L
Sbjct: 465 ---------DEIIVLDNGRIVERGTHEELL 485
|
Length = 497 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 5e-04
Identities = 68/257 (26%), Positives = 110/257 (42%), Gaps = 58/257 (22%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLT-GKIKYCGHEFKEF 240
K Q++K + V +L+GP G GK+TLL +AG L+ +T G+I G E
Sbjct: 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG-LER---ITSGEIWIGGRVVNEL 71
Query: 241 VP-QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRR-EKEAGIKPDPE 298
P R A + QN + M+VRE M + + G+ AEI R + A I E
Sbjct: 72 EPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPK-----AEIEERVAEAARIL---E 123
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVG 358
++ + D+ R +SGGQ++RV G +V
Sbjct: 124 LEPLL--------------------------------DRKPRELSGGQRQRVAMGRAIVR 151
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTI-VSLLQPAPEAYDLFDNIILLS 417
V L DE + LD+ Q+ ++++ L+ T++ V+ Q EA L D +++++
Sbjct: 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ--VEAMTLADRVVVMN 209
Query: 418 EGQI--------VYQGP 426
G VY+ P
Sbjct: 210 GGVAEQIGTPVEVYEKP 226
|
Length = 356 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 5e-04
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 11/64 (17%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKL----TGKIKYCGHEFKEF 240
+LKD+S +KP L+ GP G GK++L ALAG L +G+I E F
Sbjct: 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG-------LWPWGSGRIGMPEGEDLLF 68
Query: 241 VPQR 244
+PQR
Sbjct: 69 LPQR 72
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 5e-04
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
GLS Q++RL IA L +P +I MDEP S LD A +
Sbjct: 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATS 237
|
Length = 305 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 5e-04
Identities = 57/254 (22%), Positives = 98/254 (38%), Gaps = 34/254 (13%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
Q LK+VS + + +T L+GP G GK+T + L ++ IK C E K +
Sbjct: 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN-------RMNDLIKNCRIEGKVSIEG 78
Query: 244 RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYM 303
I + D+ E+ M F + Y+ +A R D ++ +
Sbjct: 79 ED---IYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENAL 135
Query: 304 KATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVL 363
++ AL + + L L SGGQ++R+ L K++
Sbjct: 136 RSAALWDETSDRLKSPALSL-------------------SGGQQQRLCIARTLAVKPKII 176
Query: 364 LMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYD-----LFDNIILLSE 418
L DE ++ LD +T +I + + I + +Q A D L +I +
Sbjct: 177 LFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQ 236
Query: 419 GQIVYQGPREKVLE 432
+ ++ PREK E
Sbjct: 237 TRQIFHNPREKSTE 250
|
Length = 258 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 5e-04
Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 17/214 (7%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGY----PKNQATF 939
L +++ V + G ++G +G+GK+TL L G +G + +SG
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTGDFSKLQGI 75
Query: 940 ARVSGYCEQN-DIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNA 998
++ G QN + TV E L F I+ + R VD + + LE +
Sbjct: 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR---VDRALAEIGLEKYRHR 132
Query: 999 MVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
LS Q + + +A L P + DE TS LD + V+ ++ + G+
Sbjct: 133 -----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 1059 TVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
T+V H +++ D +++M RG V+ P
Sbjct: 188 TIVYITH--NLEELHDADRIIVMDRGKIVLEGEP 219
|
Length = 274 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSL 399
R +SGGQ++RV L +V+L DE ++ LD ++ ++Q+ E T+V +
Sbjct: 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ--EKRTMVIV 200
Query: 400 LQPAPEAYDLFDNIILLSEGQIVYQGP 426
A D+ D I + +G+IV QGP
Sbjct: 201 THEMSFARDVADRAIFMDQGRIVEQGP 227
|
Length = 250 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 6e-04
Identities = 62/251 (24%), Positives = 106/251 (42%), Gaps = 44/251 (17%)
Query: 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP 242
+ILK ++ + + ++GP G+GK+TL +AG + L G I + G + P
Sbjct: 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-LEGDILFKGESILDLEP 78
Query: 243 -QRTCAYISQNDLHFG---EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
+R I L F E+ DF LA S+R+ + PE
Sbjct: 79 EERAHLGIF---LAFQYPIEIPGVSNADFL-----------RLAYNSKRKFQG----LPE 120
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVG 358
+D ++ + +K LKL+G+D + + + G SGG+KKR +M +
Sbjct: 121 LDP-LEFLEIINEK--------LKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMALL 168
Query: 359 PAKVLLMDEISTGLD----SSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNII 414
+++ ++DE +GLD I K M ++ IT LL Y D +
Sbjct: 169 DSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLD-----YIKPDYVH 223
Query: 415 LLSEGQIVYQG 425
++ G+I+ G
Sbjct: 224 VMQNGKIIKTG 234
|
Length = 252 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 6e-04
Identities = 53/266 (19%), Positives = 110/266 (41%), Gaps = 53/266 (19%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDL---KLTGKIKYCGHEFK 238
K Q+LK+++ ++T ++GP G GK+TLL AL +++D + +L G +
Sbjct: 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRAL-NRMNDIVSGARLEGAVLLDNENI- 73
Query: 239 EFVP-------QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEA 291
+ P ++ + Q F + ++ + + F R LG + + + + ++A
Sbjct: 74 -YSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQA 131
Query: 292 GIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVT 351
+ + + + + AL+G GQ++R+
Sbjct: 132 ALWDEVKDNLHKSGLALSG----------------------------------GQQQRLC 157
Query: 352 TGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYD--- 408
+L +V+LMDE + LD +T +I + M+++ I + +Q A A D
Sbjct: 158 IARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTG 217
Query: 409 --LFDNIILLSEGQIVYQGPREKVLE 432
L +++ ++ PR+K E
Sbjct: 218 FLLTGDLVEYGRTGEIFSRPRDKRTE 243
|
Length = 251 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 6e-04
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
LS Q++R++IA ++ NP I+ +DE TS LD ++ +V +T+ N
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 7e-04
Identities = 47/183 (25%), Positives = 70/183 (38%), Gaps = 44/183 (24%)
Query: 193 VKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ--RTCAYIS 250
V+P LLG GAGKTT L G D +G G + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTG---DTTVTSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 251 QNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAG 310
Q D +T RE + R GV P EI+
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGV--------------------PAEEIEK--------- 2049
Query: 311 QKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEIST 370
++ ++ LGL + AD + G SGG K++++T L+G ++L+DE +T
Sbjct: 2050 -----VANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 371 GLD 373
G+D
Sbjct: 2100 GMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 7e-04
Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 47/232 (20%)
Query: 196 SRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF--VPQRTCAYISQND 253
+++T LG GAGKTT L L G L +G + G + + +++ Q++
Sbjct: 956 NQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNLDAVRQSLGMCPQHN 1012
Query: 254 LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKT 313
+ F +TV E + F + G R +EA + E++A ++ T L ++
Sbjct: 1013 ILFHHLTVAEHILFYAQLKG------------RSWEEAQL----EMEAMLEDTGLHHKRN 1056
Query: 314 SLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLD 373
A D +SGG +++++ VG AKV+++DE ++G+D
Sbjct: 1057 EEAQD-----------------------LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVD 1093
Query: 374 SSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQG 425
+ I ++ TI+ EA L D I ++S+G++ G
Sbjct: 1094 PYSRRSIWDL---LLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 64/254 (25%), Positives = 96/254 (37%), Gaps = 60/254 (23%)
Query: 188 DVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTC 246
DVS + + LLG G GK+TLL LAG + G+I G + P QR
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGF---EQPTAGQIMLDGVDLSHVPPYQRPI 93
Query: 247 AYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEML--AEISRREKEAGIKPDPEIDAYMK 304
+ Q+ F MTV + + F G + + L AEI+ R E+ +
Sbjct: 94 NMMFQSYALFPHMTVEQNIAF-------GLKQDKLPKAEIASRVN--------EMLGLVH 138
Query: 305 ATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLL 364
A +K +SGGQ++RV L K+LL
Sbjct: 139 MQEFAKRKP--------------------------HQLSGGQRQRVALARSLAKRPKLLL 172
Query: 365 MDEISTGLDSSTTFQICKYMKQMVH-VLEI-----TTIVSLLQPAPEAYDLFDNIILLSE 418
+DE LD K +M V++I T V + EA + I +++
Sbjct: 173 LDEPMGALDK-------KLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNR 225
Query: 419 GQIVYQGPREKVLE 432
G+ V G E++ E
Sbjct: 226 GKFVQIGEPEEIYE 239
|
Length = 377 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 24/188 (12%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK--NQ 936
D ++L VS +TA++G SG GK+T + L E ++ + G + NQ
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 937 ATFAR---VSGYCEQNDIHSPH-----VTVYESLLFSAWL---RLSSDIDSKTRKMFVD- 984
+ R ++ Q + P ++VY+++ + + R +ID D
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDA 134
Query: 985 EVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
++ D ++ + +A+ LS Q++RL IA L P ++ MDEP GLD A+
Sbjct: 135 DLWDEIKHKIHKSAL-------DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASM 187
Query: 1045 IVMRTVRN 1052
V +++
Sbjct: 188 KVESLIQS 195
|
Length = 261 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 7e-04
Identities = 59/279 (21%), Positives = 117/279 (41%), Gaps = 55/279 (19%)
Query: 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLT---GKIKYCG--- 234
R +L D++ +K +++T +GP G GK+T L L +L+D ++ T G+I + G
Sbjct: 93 RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNL-NQLNDLIEGTSHEGEIYFLGTNT 151
Query: 235 --HEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAG 292
+ + + Q F EM++ + + + R G+ R ++L +I
Sbjct: 152 RSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNNGINDR-KILEKI-------- 201
Query: 293 IKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTT 352
++ +K+ AL D D + D+ +SGGQ++R+
Sbjct: 202 ------VEKSLKSAAL-----------------WDEVKDDL--DKAGNALSGGQQQRLCI 236
Query: 353 GEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412
+ +VLLMDE ++ LD T +I + ++ + + +I+ + +A + D
Sbjct: 237 ARAIALEPEVLLMDEPTSALDPIATAKI---EELILELKKKYSIIIVTHSMAQAQRISDE 293
Query: 413 IILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
+ +G I G + + F P K D++
Sbjct: 294 TVFFYQGWIEEAGETKTI--------FIHPKNKRTKDYI 324
|
Length = 329 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 7e-04
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA 937
E +L+D+S G L+G +G+GK+TL+ L + TEG+I I G N
Sbjct: 1229 EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSWNSV 1285
Query: 938 TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTN 997
T Q + V + +FS R + D + + +V + V L+ +
Sbjct: 1286 TL--------QTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIE 1337
Query: 998 AMVGLPG------VDG---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
P VDG LS ++ + +A +++ I+ +DEP++ LD I+ +
Sbjct: 1338 Q---FPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRK 1394
Query: 1049 TVRNTVDTGRTVVC 1062
T++ + ++
Sbjct: 1395 TLKQSFSNCTVILS 1408
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 8e-04
Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 41/196 (20%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
Q ++DVS KP + ++GP GAGK+TL+ L D +G+I G + +
Sbjct: 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRA 405
Query: 244 ---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEID 300
R A + Q+ F ++ + + VG +PD D
Sbjct: 406 SLRRNIAVVFQDAGLFNR-SIEDN-------IRVG------------------RPDAT-D 438
Query: 301 AYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA 360
M+A A Q A D++ + DT+VG++ R+ +SGG+++R+ L+
Sbjct: 439 EEMRAAAERAQ----AHDFIERKPD---GYDTVVGERGRQ-LSGGERQRLAIARALLKDP 490
Query: 361 KVLLMDEISTGLDSST 376
+L++DE ++ LD T
Sbjct: 491 PILILDEATSALDVET 506
|
Length = 588 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 8e-04
Identities = 63/253 (24%), Positives = 96/253 (37%), Gaps = 59/253 (23%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTT---LLMALAGKLDDDLKLTGK-IKYCGHEF 237
+ +LK ++ + P + L+GP G+GK+T LL L + L G + H +
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY 552
Query: 238 KEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
R A + Q + F +VRE + G PD
Sbjct: 553 L----HRQVALVGQEPVLFSG-SVREN-------IAYGLTD---------------TPDE 585
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD---QMRRGVSGGQKKRVTTGE 354
EI A KA Y DT VG+ Q+ SGGQK+R+
Sbjct: 586 EIMAAAKAANAHDFIMEFPNGY-----------DTEVGEKGSQL----SGGQKQRIAIAR 630
Query: 355 MLVGPAKVLLMDEISTGLD--SSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412
LV +VL++DE ++ LD Q + VL I +S ++ A D
Sbjct: 631 ALVRKPRVLILDEATSALDAECEQLLQESRSRASRT-VLLIAHRLSTVERA-------DQ 682
Query: 413 IILLSEGQIVYQG 425
I++L +G +V G
Sbjct: 683 ILVLKKGSVVEMG 695
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 8e-04
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 34/207 (16%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG---YPKNQATFARVSGYCEQND 950
G L A++G G GK++L+ L EG + + G Y QA QND
Sbjct: 664 GALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKGSVAYVPQQAWI--------QND 713
Query: 951 IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNA---MVGLPGVDG 1007
++ E++LF L + K + ++ L +LE L + +G GV+
Sbjct: 714 ------SLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVN- 760
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT--VDTGRTVVCTIH 1065
LS Q++R+++A + +N I D+P S +DA + V V +T + H
Sbjct: 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTH 820
Query: 1066 QPSIDIFEAFDELLLMKRGGQVIYAGP 1092
I D +++M GG++ G
Sbjct: 821 --GISYLPQVDVIIVMS-GGKISEMGS 844
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 9e-04
Identities = 44/225 (19%), Positives = 84/225 (37%), Gaps = 67/225 (29%)
Query: 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFK 238
K ++LK VS + + ++G G+GK+TLL L G LD+ +G++ + G
Sbjct: 14 GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDN--PTSGEVLFNGQSLS 70
Query: 239 EFVPQRTCAYISQNDL------HFG----------EMTVRETMDFSGRCLGVGTRYEMLA 282
+ +S N+ G + T E + M
Sbjct: 71 K---------LSSNERAKLRNKKLGFIYQFHHLLPDFTALENV-------------AMPL 108
Query: 283 EISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV 342
I ++ + +A +A + L+ +GL+ + + +
Sbjct: 109 LIGKKSVK---------EAKERAYEM------------LEKVGLEHRINHRPSE-----L 142
Query: 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQM 387
SGG+++RV LV ++L DE + LD++ I M ++
Sbjct: 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCG-----HE 236
+ +L DVS ++ + LLGP G+GK+TLL +AG + D +G I G E
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLE 68
Query: 237 FKEFVPQRTCAYISQNDLHFGEMTVRE 263
+ +R + Q+ F +TV E
Sbjct: 69 DELPPLRRRIGMVFQDFALFPHLTVLE 95
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 19/190 (10%)
Query: 885 RDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGG-YTEG-DISISGYP----KN 935
RD+S G + G+ G+G+T LM+ L G R G G DIS P K
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS-PLDAVKK 338
Query: 936 QATFA----RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVE 991
+ R +G+ I + ++ + SL + + + +L+
Sbjct: 339 GMAYITESRRDNGFFPNFSI-AQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA 397
Query: 992 LEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
L+ + + LS ++++ I+ L P +I DEPT G+D A A + + +R
Sbjct: 398 LKCHSVNQ----NITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 1052 NTVDTGRTVV 1061
D G+ ++
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 30/99 (30%)
Query: 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLD---SSTTFQICKYMK-----------Q 386
G+SGGQK+RV +L ++L+ DE + GLD Q+ K
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
Query: 387 MVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQG 425
M HVLE+ D +I++ +G+I+ G
Sbjct: 236 MEHVLEVA----------------DEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.001
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 22/112 (19%)
Query: 179 KKRKIQILKDVSGLVKPSRMTL-LLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEF 237
+ + LKDVS P + L+G GAGK+TLL LAG D +G + G
Sbjct: 31 EVGEFWALKDVS-FEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRG--- 83
Query: 238 KEFVPQRTCAYISQNDLHFG---EMTVRETMDFSGRCLGVGTRY--EMLAEI 284
R + + L G E+T RE + +GR LG+ + E + EI
Sbjct: 84 ------RVSSLL---GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEI 126
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 47/217 (21%), Positives = 101/217 (46%), Gaps = 30/217 (13%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATF 939
+L D+S + T ++G+SG+GK+TL +L G G+I ++G+ T
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS--GEILLNGFSLKDIDRHTL 546
Query: 940 ARVSGYCEQNDIHSPHV---TVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-L 995
+ Y Q P++ ++ E+LL A +S D + ++ E++ +
Sbjct: 547 RQFINYLPQE----PYIFSGSILENLLLGAKENVSQDE--------IWAACEIAEIKDDI 594
Query: 996 TNAMVGLP---GVDG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
N +G +G +S Q++R+ +A L+ + ++ +DE TS LD ++ +
Sbjct: 595 ENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL 654
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087
N D +T++ H+ + + + D+++++ G +
Sbjct: 655 LNLQD--KTIIFVAHR--LSVAKQSDKIIVLDHGKII 687
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 0.001
Identities = 64/251 (25%), Positives = 108/251 (43%), Gaps = 46/251 (18%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
+LK +S +K LLG G GK+TLL L D G+I G ++
Sbjct: 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADY--- 407
Query: 244 RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYM 303
E +R+ + V R + + + R+ P+ D +
Sbjct: 408 -------------SEAALRQAISV------VSQRVHLFSA-TLRDNLLLAAPNA-SDEAL 446
Query: 304 KATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVL 363
L Q+ L KLL D + +G+ R+ +SGG+++R+ L+ A +L
Sbjct: 447 IE-VL--QQVGLE-----KLLEDDKGLNAWLGEGGRQ-LSGGEQRRLGIARALLHDAPLL 497
Query: 364 LMDEISTGLDSSTTFQICKYMKQ-MVH--VLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420
L+DE + GLD+ T QI + + + + VL IT ++ L + FD I ++ GQ
Sbjct: 498 LLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGL-------EQFDRICVMDNGQ 550
Query: 421 IVYQGPREKVL 431
I+ QG +++L
Sbjct: 551 IIEQGTHQELL 561
|
Length = 574 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 26/158 (16%)
Query: 896 LTALMGVSGAGKTTLM-------DVLAG-RKTGGYTEGDISISGYPKNQATFARVSGYCE 947
+TA +G SG GK+T++ D++ G R G T ++ + R G
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVF 97
Query: 948 QNDIHSPHVTVYESLLFSAWLR-LSSDID-----SKTRKMFVDEVMDLVELEPLTNAMVG 1001
Q P ++Y+++ + A + D+D S + DEV D ++ L+
Sbjct: 98 QKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLS----- 151
Query: 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
LS Q++RL IA + P +I MDEP S LD
Sbjct: 152 ------LSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 52/236 (22%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRT 245
++ +S + +++T ++GP G GK+T + +T
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFI------------------------------KT 52
Query: 246 CAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGI---KPDP----- 297
IS+ + G + V +DF G+ + Y+ I+R ++ G+ +P+P
Sbjct: 53 LNRISELE---GPVKVEGVVDFFGQNI-----YDPRININRLRRQIGMVFQRPNPFPMSI 104
Query: 298 -EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR---GVSGGQKKRVTTG 353
E AY ++ + D +++ V D++ + G+SGGQ++R+
Sbjct: 105 YENVAY--GVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIA 162
Query: 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDL 409
L KVLLMDE + LD T ++ + + + L I + +Q A D
Sbjct: 163 RALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDF 218
|
Length = 259 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
++L DVS +KP ++ LLGP GAGK+TL+ + G + D G IK G +VPQ
Sbjct: 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGKLRIGYVPQ 74
Query: 244 R 244
+
Sbjct: 75 K 75
|
Length = 251 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 32/174 (18%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY----TEGDISISGY----PKN 935
L++++ +TA +G SG GK+TL+ R Y EG+I + G PK
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTF-NRMYELYPEQRAEGEILLDGENILTPKQ 87
Query: 936 QATF--ARVSGYCEQNDIHSPHVTVYESLLFSAWL--RLS-SDIDSK-----TRKMFVDE 985
A+V G Q P +++Y+++ F L +LS +++D + T+ +E
Sbjct: 88 DIALLRAKV-GMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE 145
Query: 986 VMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
V D + G LS Q++RL IA + P ++ +DEP S LD
Sbjct: 146 VKD----------KLHQSG-YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 0.001
Identities = 57/207 (27%), Positives = 91/207 (43%), Gaps = 26/207 (12%)
Query: 174 RILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYC 233
+++P KK +ILKD+S P +LG GAGK+TLL +AG +D + G+ +
Sbjct: 12 KVVPPKK---EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-VDKE--FNGEAR-- 63
Query: 234 GHEFKEFVPQRTCAYISQNDLHFGEMTVRE-TMDFSGRCLGVGTRYEMLAEISRREKEAG 292
P Y+ Q TVRE + R+ EIS + E
Sbjct: 64 ------PAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFN---EISAKFAE-- 112
Query: 293 IKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTM---VGDQMRRGVSGGQKKR 349
PD ++DA + A + A + L L+I D + D +SGG+++R
Sbjct: 113 --PDADMDALLAEQAELQEIIDAADAWDLD-RKLEIAMDALRCPPWDADVTKLSGGERRR 169
Query: 350 VTTGEMLVGPAKVLLMDEISTGLDSST 376
V +L+ +LL+DE + LD+ +
Sbjct: 170 VALCRLLLSKPDMLLLDEPTNHLDAES 196
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 19/211 (9%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YTEGDISISGY--PKNQAT 938
L DV+ G A++G +G+GK+TL+ L G + T G T G+ I+ K
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 939 FARVSGYCEQNDIHSP-HVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP--L 995
+ G Q H TV + + F S+ D+K + E+++LV L L
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK---AREMIELVGLPEELL 139
Query: 996 TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTV 1054
+ L G Q +R+ IA L P ++ +DEPT+GLD + +M +
Sbjct: 140 ARSPFELSG------GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK 193
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085
+ G T V H D D++++M +G
Sbjct: 194 EKGLTTVLVTHSME-DAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 21/190 (11%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG--YPKNQATFAR 941
+RDVS R G + + G+ GAG+T L L G + + G+I + G A
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR--PASSGEILLDGKPVRIRSPRDAI 332
Query: 942 VSG--YC----EQNDIHSPHVTVYESLLFSAWLRLSSD--IDSKTRKMFVDEVMDLVELE 993
+G Y + + ++ E++ ++ R S ID + + + + + ++
Sbjct: 333 KAGIAYVPEDRKSEGLVLDM-SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIK 391
Query: 994 P--LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
+ L G G Q+K + +A L +P ++ +DEPT G+D A A + R +R
Sbjct: 392 TPSPEQPIGTLSG--G---NQQK-VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIR 445
Query: 1052 NTVDTGRTVV 1061
G+ ++
Sbjct: 446 ELAAEGKAIL 455
|
Length = 500 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQ 401
+SGGQ++RV L+ AKV+L DE LD + + ++ + IT +V+L Q
Sbjct: 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212
Query: 402 PAPEAYDLFDNIILLSEGQIVYQG 425
A + I+ L +G + Y G
Sbjct: 213 -VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 319 YVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTF 378
L+L+GL+ AD + +SGG ++RV L +LLMDE + LD
Sbjct: 147 EALELVGLEGYADKYPNE-----LSGGMQQRVGLARALANDPDILLMDEAFSALDP---- 197
Query: 379 QICKYMKQMVHVLEIT---TIVSLLQPAPEAYDLFDNIILLSEGQIVYQG-PREKVLEFF 434
I M+ + L+ TIV + EA + D I ++ +G+IV G P E +L
Sbjct: 198 LIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN-- 255
Query: 435 EYMGFKCPDRKGVADFLQEV 454
P V DF++ V
Sbjct: 256 -------PANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 47/194 (24%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ- 243
IL ++S V+ + GP G GK+TLL +A + +G + + G + P+
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEA 74
Query: 244 --RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
+ +Y +Q FG+ TV + + F + I R +PD A
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQ-------------IRNR------RPDR--AA 112
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
+ A S+ T + +L SGG+K+R+ L K
Sbjct: 113 ALDLLARFALPDSILTKNITEL-------------------SGGEKQRIALIRNLQFMPK 153
Query: 362 VLLMDEISTGLDSS 375
+LL+DEI++ LD S
Sbjct: 154 ILLLDEITSALDES 167
|
Length = 223 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 26/184 (14%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLM--------DVLAGRKTGGYTEGDISISGYP 933
+ L +S F LTAL+G SG GK+T + D+ + TG +I G
Sbjct: 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77
Query: 934 KNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE 993
+ + G Q P +VY+++ + L+++ D K +D+ ++ E
Sbjct: 78 MDLVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKD----KELIDQRVE----E 126
Query: 994 PLTNAMVGLPGVDGL-------STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
L A + D L S Q++R+ IA L P ++ +DEPTS LD +++ +
Sbjct: 127 SLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI 186
Query: 1047 MRTV 1050
T+
Sbjct: 187 EETL 190
|
Length = 251 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 61/267 (22%), Positives = 94/267 (35%), Gaps = 61/267 (22%)
Query: 178 SKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEF 237
K + LKD+S + ++G GAGK+TLL +AG +GK+K
Sbjct: 35 RKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT---SGKVK------ 85
Query: 238 KEFVPQRTCAYISQNDLHFG---EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIK 294
V + I +L G E+T RE + G LG+ + EI + E I
Sbjct: 86 ---VTGKVAPLI---ELGAGFDPELTGRENIYLRGLILGLTRK-----EIDEKVDE--II 132
Query: 295 PDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGE 354
E+ ++ DQ + S G R+
Sbjct: 133 EFAELGDFI--------------------------------DQPVKTYSSGMYARLAFSV 160
Query: 355 MLVGPAKVLLMDE-ISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413
+LL+DE ++ G D+ FQ + V + TIV + D
Sbjct: 161 ATHVEPDILLLDEVLAVG-DA--AFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRA 217
Query: 414 ILLSEGQIVYQGPREKVLEFFEYMGFK 440
I L GQI +G E+V+ +E
Sbjct: 218 IWLEHGQIRMEGSPEEVIPAYEEDLAD 244
|
Length = 249 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.002
Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 62/220 (28%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKL----TGKIKYCGHEFKEF 240
+L +++ V+P L+ G GAGKT+LL ALAG L +G+I F
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAG-------LWPWGSGRISMPADSALLF 460
Query: 241 VPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEID 300
+PQR Y+ Q L +EA P+
Sbjct: 461 LPQRP--YLPQGTL----------------------------------REALCYPNA-AP 483
Query: 301 AYMKATALAGQKTSLATDYVLKLLGLDICADTMVG-DQMRRGVSGGQKKRVTTGEMLVGP 359
+ A +A VL +GL A+ + D+ R +SGG+++R+ +L+
Sbjct: 484 DFSDAELVA----------VLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHK 533
Query: 360 AKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSL 399
K + +DE ++ LD T ++ + +K+ L T++S+
Sbjct: 534 PKWVFLDEATSALDEETEDRLYQLLKEE---LPDATVISV 570
|
Length = 604 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 55/244 (22%), Positives = 95/244 (38%), Gaps = 55/244 (22%)
Query: 164 NIAENVLGSLRILPSKKRKIQ--ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD 221
+ L ++R I+ +L++++ +KP + ++G GAGKTTLL + G
Sbjct: 375 GLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ- 433
Query: 222 DDLKLTGKIKYCGHEFKEFVPQRTCAYI--SQNDLHFGEMTVRETMDFSGRCLG-VGTRY 278
K G+ KY K VP+ T + + + + FGE+T+ E + G +
Sbjct: 434 ---KGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHL---RSKTGDLNAAV 487
Query: 279 EMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338
E+L AG+ DA +
Sbjct: 488 EIL-------NRAGLS-----DAVLYRRKF------------------------------ 505
Query: 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVS 398
+S GQK+R ++L VLL+DE + LD T ++ + + ++ IT IV
Sbjct: 506 -SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVV 564
Query: 399 LLQP 402
+P
Sbjct: 565 THRP 568
|
Length = 593 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLD---SSTTFQICKYMKQMVHVLEITTIVS 398
+SGGQK+RV +L V+++DE ++ LD + + +K ++ TI+S
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNI----TIIS 198
Query: 399 LLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLE 432
+ EA + D++I++++G + +G ++ +
Sbjct: 199 ITHDLSEAMEA-DHVIVMNKGTVYKEGTPTEIFD 231
|
Length = 269 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 54/265 (20%), Positives = 102/265 (38%), Gaps = 51/265 (19%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMAL--AGKLDDDLKLTGKIKYCGHEFK- 238
K + LK + + +T L+GP G GK+T L L L + +TG + G
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76
Query: 239 ------EFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAG 292
+ Q + N F ++ E + + R GV + + + K+A
Sbjct: 77 PNEDVVQLRKQVGMVFQQPNPFPF---SIYENVIYGLRLAGVKDKAVLDEAVETSLKQAA 133
Query: 293 IKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTT 352
I + + ++ +AL+ +SGGQ++RV
Sbjct: 134 IWDE--VKDHLHESALS--------------------------------LSGGQQQRVCI 159
Query: 353 GEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPE-----AY 407
+L V+L+DE ++ LD ++ QI + ++ I + + A A+
Sbjct: 160 ARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAF 219
Query: 408 DLFDNIILLSEGQIVYQGPREKVLE 432
L N+I ++ + ++ P+EK E
Sbjct: 220 FLTGNLIEFADTKQMFLNPKEKETE 244
|
Length = 252 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 1004 GVDGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------ 1055
G S RL +A+ L P ++ +DE TS LDA A+++ +
Sbjct: 55 GGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSE 114
Query: 1056 TGRTVVCTIHQPSI----DIFEAFDELLLMKRG 1084
TV+ T + + FD +++
Sbjct: 115 KNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 28/199 (14%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYTEGDISISG---YPK- 934
Q L++VS +TAL+G SG GK+T + L EG +SI G Y
Sbjct: 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85
Query: 935 -NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSS--DIDSKTRKMF-----VDEV 986
+ + G Q P +++Y+++ + + ++ D+D DE
Sbjct: 86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET 144
Query: 987 MDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
D ++ L+ LS Q++RL IA L P II DEPTS LD + A +
Sbjct: 145 SDRLKSPALS-----------LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARI 193
Query: 1047 MRTVRNTVDTGRTVVCTIH 1065
+ N + T+V H
Sbjct: 194 EDLIMN-LKKDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 66/273 (24%), Positives = 111/273 (40%), Gaps = 86/273 (31%)
Query: 201 LLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMT 260
++G G GK++LL AL ++D K+ G + G +VPQ+ A+I QND +
Sbjct: 669 VVGQVGCGKSSLLSALLAEMD---KVEGHVHMKGS--VAYVPQQ--AWI-QND------S 714
Query: 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYV 320
+RE + F G+ L + ++A AL
Sbjct: 715 LRENILF-GKALN----------------------EKYYQQVLEACAL------------ 739
Query: 321 LKLLGLDICADTMVGDQMRRG-----VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSS 375
L L+I GD+ G +SGGQK+RV+ + A + L D+ + +D+
Sbjct: 740 --LPDLEILPS---GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 794
Query: 376 TTFQICKY-------MKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPRE 428
I ++ +K +L +T +S L P+ D II++S G+I G +
Sbjct: 795 VGKHIFEHVIGPEGVLKNKTRIL-VTHGISYL---PQV----DVIIVMSGGKISEMGSYQ 846
Query: 429 KVLEFFEYMGFKCPDRKGV-ADFLQEVTSKKDQ 460
++L R G A+FL+ + Q
Sbjct: 847 ELL-----------QRDGAFAEFLRTYAPDEQQ 868
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 26/166 (15%)
Query: 896 LTALMGVSGAGKTTLMDVL---AGRKTGGYTEGDISISGY----PK-NQATFARVSGYCE 947
+TA++G SG GK+T + L + + EG + G P+ N R G
Sbjct: 35 VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVF 94
Query: 948 QNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD- 1006
Q P +++YE++ + +R+S +K + +DE+++ L A + D
Sbjct: 95 QRPNPFP-MSIYENVAYG--VRIS----AKLPQADLDEIVE----SALKGAALWQEVKDK 143
Query: 1007 ------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
GLS Q++RL IA L P ++ MDEP S LD A V
Sbjct: 144 LNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 40/211 (18%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR 941
++L+D+S F PG ++G++GAGK+TL+ ++AG D +G + +
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV--------DKEFNGEARPAPG-IK 69
Query: 942 VSGYCEQNDIHSPHVTVYESLL------------FSAWLRLSSDIDSKTRKMF-----VD 984
V GY Q P TV E++ F+ ++ D+ + +
Sbjct: 70 V-GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQ 128
Query: 985 EVMDLVELEPLTN----AMVGL---PG---VDGLSTEQRKRLTIAVELVANPSIIFMDEP 1034
E++D + L AM L P V LS +R+R+ + L++ P ++ +DEP
Sbjct: 129 EIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
Query: 1035 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
T+ LDA + A + + ++ G TVV H
Sbjct: 189 TNHLDAESVAWLEQHLQEY--PG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.002
Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 52/225 (23%)
Query: 862 NYSVDMPAEMKAQGIEEDR---------LQLLRDVSGVFRPGVLTALMGVS--------- 903
NY +D+P+E A IE +R DV +RPG+ L G+S
Sbjct: 1208 NY-IDLPSEATAI-IENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKV 1265
Query: 904 ------GAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA-----RVSGYCEQNDIH 952
GAGK+++++ L + +G I I + A F RV Q
Sbjct: 1266 GVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDC--DVAKFGLTDLRRVLSIIPQ---- 1317
Query: 953 SPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVEL-EPLTNAMVGL-----PGVD 1006
SP +LFS +R + D S+ + E ++ + + + GL G +
Sbjct: 1318 SP-------VLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGE 1370
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 47/226 (20%)
Query: 848 VLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGK 907
VL + L++AF E+ ++ +R++S + G A++G SG+GK
Sbjct: 12 VLAVENLNIAFMQ----------------EQQKIAAVRNLSFSLQRGETLAIVGESGSGK 55
Query: 908 T----TLMDVLAGRKTGGYTEGD-----------ISISGYPKNQATFARVSG------YC 946
+ LM +L + GG + D I +S ++ A V G +
Sbjct: 56 SVTALALMRLL--EQAGGLVQCDKMLLRRRSRQVIELS--EQSAAQMRHVRGADMAMIFQ 111
Query: 947 EQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG-LPGV 1005
E +P TV E + S +RL + + ++D V + P ++ P
Sbjct: 112 EPMTSLNPVFTVGEQIAES--IRLHQGASREEAMVEAKRMLDQVRI-PEAQTILSRYP-- 166
Query: 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
LS R+R+ IA+ L P+++ DEPT+ LD A +++ ++
Sbjct: 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIK 212
|
Length = 623 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 56/240 (23%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTL-MDVL--AGRKTGGYTEGDISISGY------PK 934
L++V L + GVSG+GK++L D + G++ Y E S+S Y
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRR--YVE---SLSAYARQFLGQM 65
Query: 935 NQATFARVSGYC-----EQNDI-HSPHVTV--------YESLLFSAWLRLSSDIDSKTRK 980
++ + G +Q +P TV Y LLF + + + R
Sbjct: 66 DKPDVDSIEGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-------ARVGIRERL 118
Query: 981 MFVDEV-MDLVELEPLTNAMVGLPGVDGLSTEQRKRLT--IAVELVANPSIIF-MDEPTS 1036
F+ +V + + L + G G + QR RL I L +++ +DEP+
Sbjct: 119 GFLVDVGLGYLTLSRSAPTLSG-----GEA--QRIRLATQIGSGLT---GVLYVLDEPSI 168
Query: 1037 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM-----KRGGQVIYAG 1091
GL R ++ T++ D G TV+ H D A D ++ + GG+++ G
Sbjct: 169 GLHPRDNDRLIETLKRLRDLGNTVLVVEHDE--DTIRAADHVIDIGPGAGVHGGEIVAQG 226
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.002
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIK 231
+LKD+S + P L+G GAGK+TLL +AG+L+ D G +
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVT 58
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQP 402
SGGQ++RV L KV+L DE ++ LD ++ MK + E T++ +
Sbjct: 138 SGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE--EGMTMIIVTHE 195
Query: 403 APEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEV 454
A ++ D +I + +G+I+ +GP E+ F P + FL ++
Sbjct: 196 MGFAREVADRVIFMDQGKIIEEGPPEEF--------FDNPKSERTRQFLSKI 239
|
Length = 240 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.003
Identities = 52/260 (20%), Positives = 98/260 (37%), Gaps = 76/260 (29%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLT----GKIKYCGHEFKEF 240
+LK++S +KP ++G G+GK++LL+AL +L G I G + +
Sbjct: 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLAL-------FRLVELSSGSILIDGVDISKI 71
Query: 241 VPQ--RTC-AYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
R+ + I Q+ + F T+R +D G D
Sbjct: 72 GLHDLRSRISIIPQDPVLF-SGTIRSNLDPFGEY-----------------------SDE 107
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLV 357
E+ ++ L ++V L G G+ + S GQ++ + L+
Sbjct: 108 ELWQALERVGL--------KEFVESLPGGLDTVVEEGGENL----SVGQRQLLCLARALL 155
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVH-------VLEIT----TIVSLLQPAPEA 406
+K+L++DE + +D T +++ + VL I TI+
Sbjct: 156 RKSKILVLDEATASVDPETD----ALIQKTIREAFKDCTVLTIAHRLDTIID-------- 203
Query: 407 YDLFDNIILLSEGQIVYQGP 426
D I++L +G++V
Sbjct: 204 ---SDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 44/233 (18%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDD---DLKLTGKIKYCGHEFKEF 240
LK +S ++ + +GP G GK+T L L +++D +L G+I+ G +
Sbjct: 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLR-LFNRMNDLIPATRLEGEIRIDGRNIYDK 75
Query: 241 VPQ-----RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKP 295
Q + + Q F + ++ E + + R GV + + K A +
Sbjct: 76 GVQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALW- 133
Query: 296 DPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEM 355
E+ +K +A A +SGGQ++R+
Sbjct: 134 -DEVKDKLKESAFA--------------------------------LSGGQQQRLCIARA 160
Query: 356 LVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYD 408
+ VLLMDE ++ LD +T ++ + + ++ I + +Q A D
Sbjct: 161 MAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSD 213
|
Length = 250 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQP 402
SGGQ++RV L +V+L DE ++ LD ++ K M+ + E T+V +
Sbjct: 154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE--EGRTMVVVTHE 211
Query: 403 APEAYDLFDNIILLSEGQIVYQGPREKVLE 432
A D+ ++I L +G+I +GP E+V
Sbjct: 212 MGFARDVSSHVIFLHQGKIEEEGPPEQVFG 241
|
Length = 256 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVH-----VLEITTIV 397
SGGQ++RV L +L+ DE +T LD + QI +K++ +L IT +
Sbjct: 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL 218
Query: 398 SLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLE 432
+++ D + ++ G+IV G E +
Sbjct: 219 GIVR------KFADRVYVMQHGEIVETGTTETLFA 247
|
Length = 534 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 23/158 (14%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR 941
++L DVS +PG + L+G +GAGK+TL+ V+ G EG I K R
Sbjct: 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVI------KRNGKL-R 68
Query: 942 VSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001
+ GY Q ++ L + +LRL T+K + + V+ L +A
Sbjct: 69 I-GYVPQK----LYLDTTLPLTVNRFLRLRPG----TKKEDILPALKRVQAGHLIDA--- 116
Query: 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 117 -P-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 74/279 (26%), Positives = 115/279 (41%), Gaps = 62/279 (22%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRT 245
L D++ + + ++G G GKT+L+ A+ G+L E V + +
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH------------AETSSVVIRGS 680
Query: 246 CAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKA 305
AY+ Q F TVRE + F G+ +E S R A ID
Sbjct: 681 VAYVPQVSWIF-NATVRENILF-------GSDFE-----SERYWRA-------IDV---- 716
Query: 306 TALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV--SGGQKKRVTTGEMLVGPAKVL 363
T+L D L L G D+ T +G+ RGV SGGQK+RV+ + + +
Sbjct: 717 -------TALQHDLDL-LPGRDL---TEIGE---RGVNISGGQKQRVSMARAVYSNSDIY 762
Query: 364 LMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVY 423
+ D+ + LD+ Q+ + M L+ T V L+ L D IIL+SEG I
Sbjct: 763 IFDDPLSALDAHVAHQV--FDSCMKDELKGKTRV-LVTNQLHFLPLMDRIILVSEGMIKE 819
Query: 424 QGPREKVL---EFFEYMGFKCPDRKGVADFLQEVTSKKD 459
+G ++ F+ K + G D QEV + +
Sbjct: 820 EGTFAELSKSGSLFK----KLMENAGKMDATQEVNTNDE 854
|
Length = 1495 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 19/156 (12%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAG-----RKTGGYTEGDISISGYPKNQATF-----ARVS 943
G + LMG+SG+GK+TL+ + G R + +GD S+ + AT RVS
Sbjct: 50 GEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVS 109
Query: 944 GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLP 1003
+Q + P TV E++ F L + + R+ VDE ++LV L + G
Sbjct: 110 MVFQQFAL-LPWRTVEENVAFG--LEMQG-MPKAERRKRVDEQLELVGLAQWADRKPG-- 163
Query: 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
LS ++R+ +A I+ MDEP S LD
Sbjct: 164 ---ELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 0.003
Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 1005 VDGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
+ G+S ++ L + + L++ S++ +DEP +GL + ++ ++ + G ++
Sbjct: 187 IKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLI 246
Query: 1062 CTIHQPSI 1069
T H P +
Sbjct: 247 FTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 19/88 (21%)
Query: 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVH---------VLEI 393
SGGQK+RV L+ +LL+DE LD+ T + M+ ++ VL +
Sbjct: 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIE----MQDLIESLWQQHGFTVLLV 190
Query: 394 TTIVSLLQPAPEAYDLFDNIILLSEGQI 421
T VS EA + D ++L+ EG+I
Sbjct: 191 THDVS------EAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 55/268 (20%), Positives = 96/268 (35%), Gaps = 68/268 (25%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
QIL D++ + +T +GP G GK+T L C + +FVP
Sbjct: 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLR------------------CFNRMNDFVPN 60
Query: 244 RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGI--KPDPEIDA 301
C GE+ + + +D V + R K + KP+P +
Sbjct: 61 --CKVK-------GELDI-DGIDVYSVDTNV---------VLLRAKVGMVFQKPNPFPKS 101
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR----------------GVSGG 345
A + LA + KL D +V + +SGG
Sbjct: 102 IYDNVAYGPKLHGLAKNKK-KL-------DEIVEKSLTSVGLWEELGDRLKDSAFELSGG 153
Query: 346 QKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEIT-TIVSLLQPAP 404
Q++R+ + +LLMDE + LD T I + ++ L+ TI+ +
Sbjct: 154 QQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVI----ENLIQELKKNFTIIVVTHSMK 209
Query: 405 EAYDLFDNIILLSEGQIVYQGPREKVLE 432
+A + D + G+IV +++ +
Sbjct: 210 QAKKVSDRVAFFQSGRIVEYNTTQEIFK 237
|
Length = 251 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 56/268 (20%), Positives = 106/268 (39%), Gaps = 59/268 (22%)
Query: 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFK 238
K++ +L +VS ++ LLG G GK+TL L G L+ + G + + G +
Sbjct: 20 AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG-LEKPAQ--GTVSFRGQDLY 76
Query: 239 EFVPQRTCAYISQNDLHFGE--------MTVRETMDFSGRCLGVGTRYEMLAEISRREKE 290
+ ++ A+ L F + MTVR+ +G L + E++
Sbjct: 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQI---------IGEPLRHLTSLDESEQK 127
Query: 291 AGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRV 350
A + L L ++GL ++ D++ R +SGGQ +R+
Sbjct: 128 A------------RIAEL------------LDMVGLR--SEDA--DKLPRQLSGGQLQRI 159
Query: 351 TTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQM-----VHVLEITTIVSLLQPAPE 405
L K++++DE + LD I + ++++ L IT + L
Sbjct: 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRL------ 213
Query: 406 AYDLFDNIILLSEGQIVYQGPREKVLEF 433
+ ++ +GQIV + ++L F
Sbjct: 214 VQSFCQRVAVMDKGQIVEECDVAQLLSF 241
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 47/182 (25%), Positives = 71/182 (39%), Gaps = 44/182 (24%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR 941
+ ++ + F +TAL+G SG+GK+T + L + +I AR
Sbjct: 34 EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSL--------NRMNDTIDI--------AR 77
Query: 942 VSG--YCEQNDIHSPHVTVYE-----SLLFSAWLRLSSDI----------DSKTRKMFVD 984
V+G DI+ + VYE ++F + I K +D
Sbjct: 78 VTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLD 137
Query: 985 EVMDLVELEPLTNAMVGLPGVD-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037
E+ VE L A + D LS Q++RL IA + P I+ MDEP S
Sbjct: 138 EI---VE-TSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASA 193
Query: 1038 LD 1039
LD
Sbjct: 194 LD 195
|
Length = 267 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.004
Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 68/196 (34%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA 937
E ++ L VS G A++G SG GK+TL +L +T T G++ G
Sbjct: 25 ERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQG------ 76
Query: 938 TFARVSGYCEQNDIHSPHVTV--------------YESL--------LFSAWLRLSSDID 975
Q+ + + Y SL + L +++ +
Sbjct: 77 ----------QDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLS 126
Query: 976 SKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE------------QRKRLTIAVELV 1023
+ R+ +M V GL E QR+R+ IA L+
Sbjct: 127 AAERREKALAMMAKV----------------GLRPEHYDRYPHMFSGGQRQRIAIARALM 170
Query: 1024 ANPSIIFMDEPTSGLD 1039
+P ++ DEP S LD
Sbjct: 171 LDPDVVVADEPVSALD 186
|
Length = 327 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1458 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-255 Score=2360.82 Aligned_cols=1348 Identities=54% Similarity=0.913 Sum_probs=1258.5
Q ss_pred CChhHhhHHHHHhhCCChhhhhhhccccccCCCcccceeeccCCCChhhhHHHHHHHHhhcccCHHHHHHHHHHHHhhcC
Q 000506 50 DDDEEELRWAAIERLPTYDRLRRGMLSQLGDDGKVVRREVNVKKLGMQDRKQLRESILKLVEEDNDKFLRKLRERIDRVG 129 (1458)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 129 (1458)
+||||+|||||+|||||++| +++.+.. ++ ++|+.++++.|+..++++..+..++|+++++.+++++++++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~-~~-----~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~- 81 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIF-ES-----EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV- 81 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhc-cC-----cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc-
Confidence 45999999999999999999 6665321 11 58999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeeeeEEEEEecCCCCCCCchHHHHHHHHhhhhhhcccccccccceeeeceeeEEeCCeEEEEEcCCCCcH
Q 000506 130 IDIPKIEIRYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGK 209 (1458)
Q Consensus 130 ~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGK 209 (1458)
+.|.++++++++.+++++..| ||+.|...+.++..+...+.. ++.+.+||+|+||.++||||++++|||||||
T Consensus 82 -~~p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ 154 (1391)
T KOG0065|consen 82 -ELPTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGK 154 (1391)
T ss_pred -cCCceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCch
Confidence 899999999999999998876 899999888888776555432 4566789999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHH
Q 000506 210 TTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREK 289 (1458)
Q Consensus 210 STLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~ 289 (1458)
||||++|+|.++......|+|+|||++.+++.+++.++|++|+|.|+|+|||||||+|+++|++++.+++ +..|+|+
T Consensus 155 ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~ 231 (1391)
T KOG0065|consen 155 TTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREK 231 (1391)
T ss_pred HHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHH
Confidence 9999999999988777789999999999999989999999999999999999999999999999998887 6666665
Q ss_pred hcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCC
Q 000506 290 EAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEIS 369 (1458)
Q Consensus 290 ~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPt 369 (1458)
.. .++|++++++||++|+||+|||+++||+||||||||+||+++++++++++|||+|
T Consensus 232 ~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 232 LA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred HH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence 32 2678999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHH
Q 000506 370 TGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVAD 449 (1458)
Q Consensus 370 sgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad 449 (1458)
+|||++|+.++++.||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||+||+|+++||
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~AD 368 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTAD 368 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcchhhhhHHhhhcCCcCCcCCCccccccCCCCcchHHHHHHHHHH
Q 000506 450 FLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGR 529 (1458)
Q Consensus 450 ~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R 529 (1458)
|++++++++++.++|.++..|+.+.+++||.+.|.+++.++++..+++.++++.+.++.++..++|.+++|+|+++|+.|
T Consensus 369 fLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R 448 (1391)
T KOG0065|consen 369 FLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIR 448 (1391)
T ss_pred HHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhccc
Q 000506 530 EWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRD 609 (1458)
Q Consensus 530 ~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~ 609 (1458)
+|++++||.+++++++++.+++|+++|++|+++.+ .+..++..+.|++||++++.+|++++|+.++++++|||+|||+
T Consensus 449 ~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~ 526 (1391)
T KOG0065|consen 449 EFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRD 526 (1391)
T ss_pred HHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhc
Confidence 99999999999999999999999999999999985 5566778899999999999999999999999999999999999
Q ss_pred CcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 000506 610 HLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLG 689 (1458)
Q Consensus 610 ~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~ 689 (1458)
..|||||+++++.+++++|..++++++|++++||++|+.|++++||++++++++++++++++||+++++++++.+|+.+|
T Consensus 527 ~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g 606 (1391)
T KOG0065|consen 527 LSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIG 606 (1391)
T ss_pred ccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHHHHHHHhhcCCCCCCCCCCC---------CCc---ccchhhhh
Q 000506 690 TFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERWSKPVSDP---------KIH---EPTVGKLL 757 (1458)
Q Consensus 690 ~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~---------~~~---~~~~g~~~ 757 (1458)
++.++++++++||+|+..+||+||+|++|++|++|+++++++|||++++|+|.+.++ ..| ..+.|..+
T Consensus 607 ~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~ 686 (1391)
T KOG0065|consen 607 GILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDY 686 (1391)
T ss_pred HHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceE
Confidence 999999999999999999999999999999999999999999999999999973211 112 36789999
Q ss_pred hhccCcc-----ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceeecccccccccCCCCCCCCCccccccc
Q 000506 758 LKSRGFF-----TVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKKASGQPGTEDTDMSVRSS 832 (1458)
Q Consensus 758 l~~~g~~-----~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1458)
++.+++. ...+|+|+++|+++||.++|++++++++.|+++.++.++.+..+............ . ....
T Consensus 687 v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~-~-----~~~~- 759 (1391)
T KOG0065|consen 687 VSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAG-S-----SSEI- 759 (1391)
T ss_pred EecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhcc-c-----cccc-
Confidence 9999988 77789999999999999999999999999999999988887766522111110000 0 0000
Q ss_pred CCCCCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHh
Q 000506 833 SENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMD 912 (1458)
Q Consensus 833 ~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~ 912 (1458)
+......+.+.++++.|+.+..++++||.|.++++.+++.+| +++++|+||||.++||.+|||||+||||||||||
T Consensus 760 -~~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLd 835 (1391)
T KOG0065|consen 760 -EKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLD 835 (1391)
T ss_pred -cccccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHH
Confidence 000111111456788999999999999999999988877766 6789999999999999999999999999999999
Q ss_pred hhcCCcCCCceeeEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCC
Q 000506 913 VLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVEL 992 (1458)
Q Consensus 913 ~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L 992 (1458)
+||||+++|.++|+|+|||+|+++..++|.+|||+|+|+|.+.+||||+|.|+|+||++.+++.+++.++||++++.++|
T Consensus 836 vLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL 915 (1391)
T KOG0065|consen 836 VLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLEL 915 (1391)
T ss_pred HHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHH
Q 000506 993 EPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1071 (1458)
Q Consensus 993 ~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p-~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i 1071 (1458)
++++|.+||.+| +|||.+|||||+||+||++|| .||||||||||||+++|..|++++|+++++|+||||||||||.++
T Consensus 916 ~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~i 994 (1391)
T KOG0065|consen 916 KEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDI 994 (1391)
T ss_pred hhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHH
Confidence 999999999999 999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHhhceEEEEecCcEEEEeCCCCcchHHHHHHHHhCCCCCCCCCCCCCcceeeeccChhhhhhhhhhHHHHHhhCHHHHH
Q 000506 1072 FEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSSLYQR 1151 (1458)
Q Consensus 1072 ~~~~D~vlll~~gG~~~~~G~~~~~~~~~~~~f~~~~g~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~ 1151 (1458)
++.||++++|++||+++|+||+|++++++++||++++|++ |++..||||||||+++.+.+...+.||++.|++|+++++
T Consensus 995 fe~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~ 1073 (1391)
T KOG0065|consen 995 FEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKR 1073 (1391)
T ss_pred HHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHH
Confidence 9999999999999999999999999999999999999886 555559999999999999998889999999999999999
Q ss_pred HHHHHHHhcCCCCC-CCCCCCCCCCCchHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHH
Q 000506 1152 NEELIKELSTPAPG-SSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQ 1230 (1458)
Q Consensus 1152 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~ 1230 (1458)
+++++++++.++++ +.+..++++|++|+|.|++.|+|||+++|||+|+|+.+|++++++.||++|++||++|+ ++|
T Consensus 1074 ~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q 1150 (1391)
T KOG0065|consen 1074 NKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQ 1150 (1391)
T ss_pred HHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHH
Confidence 99999999999988 78888899999999999999999999999999999999999999999999999999995 789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcc
Q 000506 1231 DLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAW 1310 (1458)
Q Consensus 1231 ~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~P~~~~~~~~~~~i~Y~~~g~~~ 1310 (1458)
|++|.+|++|+++++.+.+++..++|.+..||.+++|||++|||||.||++||+++|+||.++++++|++|+|+|+||++
T Consensus 1151 ~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~ 1230 (1391)
T KOG0065|consen 1151 GLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYW 1230 (1391)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchh
Confidence 99999999999999999998888889999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhCHHHHHHHHH
Q 000506 1311 KAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGL 1390 (1458)
Q Consensus 1311 ~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l 1390 (1458)
++.+|+||+++++++.+|++++|||+.+++||.++|+++++++++++++||||++|++.||.||+||||+||++|.++|+
T Consensus 1231 ~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gl 1310 (1391)
T KOG0065|consen 1231 TASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGL 1310 (1391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCcccccccC-----CCCcccHHHHHHhhhC----CccCChhhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 000506 1391 VTSQVGDIEGNVEIPG-----STATMTVKQLLKDSFG----FKYDFLPVVAVVKLVWLLAFVFVFTLAITLINFQRR 1458 (1458)
Q Consensus 1391 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~g----~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1458 (1458)
+..++||.+..|...+ +++++||++|++++|| |.++.......+..+|.+++.+++.+++|+.|||||
T Consensus 1311 i~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1311 ISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred HHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 9999999987764332 2346899999999999 999999999999999999999999999999999987
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-238 Score=2369.52 Aligned_cols=1417 Identities=61% Similarity=1.059 Sum_probs=1275.7
Q ss_pred ccccccCC---C----CCCChhHhhHHHHHhhCCChhhhhhhcccccc-CCCccc---ceeeccCCCChhhhHHHHHHHH
Q 000506 39 SSNAFSRS---Q----RDDDDEEELRWAAIERLPTYDRLRRGMLSQLG-DDGKVV---RREVNVKKLGMQDRKQLRESIL 107 (1458)
Q Consensus 39 ~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~l~~~~~~~~~~~~~ 107 (1458)
.+++|++. + ..|||||+|+|||+||||||+|+|++++.+.. ++|... ..++|+++|+.++++.+++++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (1470)
T PLN03140 23 MEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVF 102 (1470)
T ss_pred hhhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHHHHHhhh
Confidence 36788542 1 36789999999999999999999999996431 111111 1259999999999999999999
Q ss_pred hhcccCHHHHHHHHHHHHhhcCCCCCceEEEEeeeeEEEEEecCCCCCCCchHHHHHHHHhhhhhhcccccccccceeee
Q 000506 108 KLVEEDNDKFLRKLRERIDRVGIDIPKIEIRYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILK 187 (1458)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~g~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~ 187 (1458)
+++++|++++++++++|.+++|+++|+++|+|+||+|++++.++.+.+||++|.+.+.++.+....+...+++.+++||+
T Consensus 103 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~ 182 (1470)
T PLN03140 103 KVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILK 182 (1470)
T ss_pred cccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceecc
Confidence 99999999999999999999999999999999999999999999999999999999888776543332233445688999
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCCCCCCCCHHHHHHH
Q 000506 188 DVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDF 267 (1458)
Q Consensus 188 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f 267 (1458)
|+||.++|||+++|+||||||||||||+|+|+++++.+++|+|.+||+++++...++.++||+|+|.|++++||+|||.|
T Consensus 183 ~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f 262 (1470)
T PLN03140 183 DASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDF 262 (1470)
T ss_pred CCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHH
Confidence 99999999999999999999999999999999988777899999999998877667889999999999999999999999
Q ss_pred hhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCCCChHHH
Q 000506 268 SGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQK 347 (1458)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGLSGGqk 347 (1458)
+++|++.+.++++..+..+++++.++.|+++++.+||++..++.+.+..++.+++.+||++|+||.||+.+.||||||||
T Consensus 263 ~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGer 342 (1470)
T PLN03140 263 SARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQK 342 (1470)
T ss_pred HHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccc
Confidence 99998877666666677788888888888899999999988887778889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeEEEEcCh
Q 000506 348 KRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPR 427 (1458)
Q Consensus 348 kRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~iv~~G~~ 427 (1458)
|||+||++|+++|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.++++++||+|++|++|+++|+||+
T Consensus 343 kRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~ 422 (1470)
T PLN03140 343 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 422 (1470)
T ss_pred eeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCH
Confidence 99999999999999999999999999999999999999998866889999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcchhhhhHHhhhcCCcCCcCCCc
Q 000506 428 EKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDKSRTHP 507 (1458)
Q Consensus 428 ~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~ 507 (1458)
+++.+||+++||+||+++++|||+++++++++++++|.+...|+++.++++|+++|++++.++++.++++.|.++.+.++
T Consensus 423 ~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 502 (1470)
T PLN03140 423 DHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHK 502 (1470)
T ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhccc
Confidence 99999999999999999999999999999988888887777888889999999999999999988888877776666666
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHHHH
Q 000506 508 AALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINLM 587 (1458)
Q Consensus 508 ~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~lff~l~~~~ 587 (1458)
.....++|..++++|+++|++|++++++||+..+++|+++.+++|+++|++|++++++..+..++..+.|++||+++.++
T Consensus 503 ~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~ 582 (1470)
T PLN03140 503 AALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINM 582 (1470)
T ss_pred ccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence 66667789999999999999999999999999999999999999999999999998776555667788999999999999
Q ss_pred HHHHHHHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHH
Q 000506 588 FNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSM 667 (1458)
Q Consensus 588 ~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~ 667 (1458)
+++++++..++.+||||+|||+.+||++|+|+++++++++|+.++++++|++++|||+|+.+++++||.|++++++++++
T Consensus 583 ~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~ 662 (1470)
T PLN03140 583 FNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQM 662 (1470)
T ss_pred HHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 000506 668 ALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERWSKPVSDPK 747 (1458)
Q Consensus 668 ~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~ 747 (1458)
+.++|++++++++++.+|+.+++++++++++++||++++++||+||+|++|+||+.|+++|+++|||.+.+|.+..+...
T Consensus 663 ~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~ 742 (1470)
T PLN03140 663 AAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDN 742 (1470)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988865322211
Q ss_pred CcccchhhhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceeecccccccccCCCC-----CC
Q 000506 748 IHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKKASGQP-----GT 822 (1458)
Q Consensus 748 ~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 822 (1458)
..+.|..+|+.+|+...+.|+|++++++++|+++|+++++++++|.++.......+..+. .+........ ..
T Consensus 743 --~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 819 (1470)
T PLN03140 743 --STRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEET-AEEMEGEEDSIPRSLSS 819 (1470)
T ss_pred --CcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccc-hhhhhcccccccccccc
Confidence 357899999999999999999999999999999999999999999987655544432211 0000000000 00
Q ss_pred CC-Cc---cc---cc-c-c-----CCC-CCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccccceecccc
Q 000506 823 ED-TD---MS---VR-S-S-----SEN-VGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDV 887 (1458)
Q Consensus 823 ~~-~~---~~---~~-~-~-----~~~-~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 887 (1458)
+. .. .. .. . . ... .......+.+++.+|+.|.+++|+||+|+++++.+.+..+...+++++|+||
T Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~v 899 (1470)
T PLN03140 820 ADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREV 899 (1470)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCc
Confidence 00 00 00 00 0 0 000 0001122345677889999999999999999877666555555667899999
Q ss_pred eeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHh
Q 000506 888 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAW 967 (1458)
Q Consensus 888 s~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~ 967 (1458)
|++++|||++|||||||||||||||+|+|+.+++..+|+|.+||++..+..+++.+|||+|+|.+++.+||+|+|.|++.
T Consensus 900 s~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~ 979 (1470)
T PLN03140 900 TGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAF 979 (1470)
T ss_pred EEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999987667899999999987655567789999999999999999999999998
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 000506 968 LRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047 (1458)
Q Consensus 968 lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~ 1047 (1458)
+|.+.+.+.++++++++++++.++|.+++|+.+|.+++++|||||||||+||+||+.+|+||||||||||||+.++..++
T Consensus 980 lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~ 1059 (1470)
T PLN03140 980 LRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1059 (1470)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Confidence 88776666677778899999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCCcchHHHHHHHHhCCCCCCCCCCCCCcceeeecc
Q 000506 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEIS 1127 (1458)
Q Consensus 1048 ~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~~~~~~~~~~f~~~~g~~~~~~~~npad~~l~v~ 1127 (1458)
+.|++++++|+|||||+|||+.++++.||++++|++||+++|+||.+++++++++||++++|+++||+++||||||||++
T Consensus 1060 ~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~ 1139 (1470)
T PLN03140 1060 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVS 1139 (1470)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhh
Confidence 99999998999999999999977899999999999889999999999888999999999988888999999999999999
Q ss_pred ChhhhhhhhhhHHHHHhhCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcChhhHHHHHHH
Q 000506 1128 TPTAEAQLNVDFADIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAV 1207 (1458)
Q Consensus 1128 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~ 1207 (1458)
+.+.+...+.||++.|++|++++++++++++++.++++.++..++++|++++|+|++.|+||+++++||||.|+.+|+++
T Consensus 1140 ~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~ 1219 (1470)
T PLN03140 1140 SLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFF 1219 (1470)
T ss_pred cccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHH
Confidence 87666666679999999999999999888888777666666666788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHHHH
Q 000506 1208 TIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIE 1287 (1458)
Q Consensus 1208 ~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e 1287 (1458)
++++|+++|++||+++++..+++++++++|++|++++|+++.++++++|.+..||+||+|||++|+|++++|++|++++|
T Consensus 1220 ~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~e 1299 (1470)
T PLN03140 1220 TLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCE 1299 (1470)
T ss_pred HHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 99999999999999998777789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcccccCC
Q 000506 1288 LIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPR 1367 (1458)
Q Consensus 1288 ~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~ 1367 (1458)
+|+.++++++|++|+|||+||++++.+||||+++++++.++++++|+++++++||.++|+.++++++++|++||||++|+
T Consensus 1300 iP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~ 1379 (1470)
T PLN03140 1300 IPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPR 1379 (1470)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhhhhhhCHHHHHHHHHHHHhhCCCcccccccCCCCcccHHHHHHhhhCCccCChhhHHHHHHHHHHHHHHHHH
Q 000506 1368 VQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEIPGSTATMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFT 1447 (1458)
Q Consensus 1368 ~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~il~~~~~~f~~~~~ 1447 (1458)
++||+||+|+||+||++|+++|+++|||+|.+.+|.+||..+..++++|++++|||+++++|++++++++|+++|+++++
T Consensus 1380 ~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~ 1459 (1470)
T PLN03140 1380 PKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFA 1459 (1470)
T ss_pred HHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877777643346899999999999999999999999999999999999
Q ss_pred HHHHhhcccCC
Q 000506 1448 LAITLINFQRR 1458 (1458)
Q Consensus 1448 ~~l~~~~~~~r 1458 (1458)
+++|++|||||
T Consensus 1460 ~~~~~~~~q~r 1470 (1470)
T PLN03140 1460 FCIRTLNFQTR 1470 (1470)
T ss_pred HHHHHhhcccC
Confidence 99999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-187 Score=1890.04 Aligned_cols=1289 Identities=31% Similarity=0.537 Sum_probs=1065.4
Q ss_pred cCHHHHHHHHHHHHhhcCCCCC--ceEEEEeeeeEEEEEecCCCCCCCchHHHHHHHHhhhhhhcccccccccceeeece
Q 000506 112 EDNDKFLRKLRERIDRVGIDIP--KIEIRYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDV 189 (1458)
Q Consensus 112 ~~~~~~~~~~~~~~~~~g~~~p--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 189 (1458)
.|++++++.++++.++.+...| +++|+|+||+|++ ...+...+||++|.+.+....+...+. ..+++++++||+|+
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 4566676655555555555555 9999999999999 444666789999988776664433221 12334567899999
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcccEEEECCeecCCcc--ccceEEEecCCCCCCCCCCHHHHHH
Q 000506 190 SGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD-LKLTGKIKYCGHEFKEFV--PQRTCAYISQNDLHFGEMTVRETMD 266 (1458)
Q Consensus 190 s~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~-~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 266 (1458)
|+.++|||+++|+||||||||||||+|+|+.++. ...+|+|.+||+++++.. .++.++||+|+|.|++.+||+||+.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 9999999999999999999999999999997431 124999999999876432 3456999999999999999999999
Q ss_pred HhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCCCChHH
Q 000506 267 FSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQ 346 (1458)
Q Consensus 267 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGLSGGq 346 (1458)
|+++++.+..... ...+.++ .+...+.+++.+||++++||+||++..|||||||
T Consensus 161 f~~~~~~~~~~~~---~~~~~~~-----------------------~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPD---GVSREEY-----------------------AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCC---CCCHHHH-----------------------HHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 9988764321100 0011110 0122456899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeEEEEcC
Q 000506 347 KKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGP 426 (1458)
Q Consensus 347 kkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~iv~~G~ 426 (1458)
||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999999876678999999999999999999999999999999999
Q ss_pred hhhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcchhhhhHHhhhcCCcCCc---
Q 000506 427 REKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDKS--- 503 (1458)
Q Consensus 427 ~~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~l~~~~~~~~~~~--- 503 (1458)
++++.+||+++||+||++.|++||++++++++++ +++.. .+.....++++++++|++++.++++.++++.+.++.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~-~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPG-YEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hcccc-ccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999987643 22211 111223678999999999988777766654322110
Q ss_pred ------------CCCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccc
Q 000506 504 ------------RTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVAD 571 (1458)
Q Consensus 504 ------------~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~ 571 (1458)
+..+.....++|..++|+|++.|++|.++.++||+..+..++++.+++|+++|++|++++.+.. +
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~---~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS---D 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCch---h
Confidence 0001122345688999999999999999999999999999999999999999999999886443 4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCcchhH
Q 000506 572 GAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAA 651 (1458)
Q Consensus 572 ~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~~~~~ 651 (1458)
.+.+.|++||++++.++.++.++...+.+|++|+|||.+++|++++|+++++++++|+.++.+++|++++|||+|+.+++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 56789999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHHHHHH
Q 000506 652 SRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVI 731 (1458)
Q Consensus 652 ~~ff~~~l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 731 (1458)
++||.+++++++++.++.++++++++++++..+|+.+++++++++++++||+++.++||+||+|++|+||+.|+++++++
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCC--CC----------CCCc---------ccchhhhhhhc-cCccccchhhHHHHHHHHHHHHHHHHHHH
Q 000506 732 NEFLDERWSKPV--SD----------PKIH---------EPTVGKLLLKS-RGFFTVNYWYWICIGALFGFTILFNILFI 789 (1458)
Q Consensus 732 nef~~~~~~~~~--~~----------~~~~---------~~~~g~~~l~~-~g~~~~~~~~w~~~g~l~g~~i~f~~l~~ 789 (1458)
|||.+..+.|.. |. ...| +.+.|.++|+. +++ ...|.|+++|++++++++|.++++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~--~~~~~w~n~gil~~~~v~f~~~~~ 687 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQY--YNSHKWRNFGIIIGFTVFFFFVYI 687 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCc--ccchhhHHHHHHHHHHHHHHHHHH
Confidence 999999998851 11 1112 23578888884 444 456899999999999999999999
Q ss_pred HHHHhhCCCCCCCCceeecccccccccCCCCCCCCCcccccccCC----CCCCCCCCCCCCcccC--CCCeEEEEeeeee
Q 000506 790 AAIQFLNPLGKAKPTVIEEDGDKKKKASGQPGTEDTDMSVRSSSE----NVGTTGHGPKKGMVLP--FQPLSLAFHHVNY 863 (1458)
Q Consensus 790 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~--~~~~~l~~~~l~~ 863 (1458)
++++|.++..........+..............+.....+++..+ ...............| .....++|+|++|
T Consensus 688 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~ 767 (1394)
T TIGR00956 688 LLTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTY 767 (1394)
T ss_pred HHHHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEE
Confidence 999998865544433322221100000000000000000000000 0000000000000001 1123589999999
Q ss_pred EeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC-ceeeEEEECCeeCCcccccce
Q 000506 864 SVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YTEGDISISGYPKNQATFARV 942 (1458)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~ 942 (1458)
.++.+ .+++++|+|||++++|||++||||||||||||||++|+|+.+++ +.+|+|.+||++... .+++.
T Consensus 768 ~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~ 837 (1394)
T TIGR00956 768 EVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRS 837 (1394)
T ss_pred EecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcc
Confidence 88532 13467999999999999999999999999999999999997644 467999999998753 46788
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000506 943 SGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVEL 1022 (1458)
Q Consensus 943 ~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL 1022 (1458)
+|||+|+|.+++.+||+|+|.|++.+|.+.+.+.++++++++++++.++|.+++|+.+|.++. +|||||||||+||+||
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL 916 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVEL 916 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHH
Confidence 999999999999999999999999988776666777778899999999999999999986544 8999999999999999
Q ss_pred hhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCCcchHHHH
Q 000506 1023 VANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLV 1101 (1458)
Q Consensus 1023 ~~~p~-illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~~~~~~~~ 1101 (1458)
+.+|+ ||||||||||||+.++..++++|++++++|+|||||+|||+..+++.||++++|++||+++|.|+.++++++++
T Consensus 917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~ 996 (1394)
T TIGR00956 917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTII 996 (1394)
T ss_pred HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHH
Confidence 99997 99999999999999999999999999888999999999999777889999999998889999999988888999
Q ss_pred HHHHhCCCCCCCCCCCCCcceeeeccChhhhhhhhhhHHHHHhhCHHHHHHHHHHHHhcCCCCCCC---CCCCCCCCCch
Q 000506 1102 EYFEAVPGVPRITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSSLYQRNEELIKELSTPAPGSS---DLYFPTQYSQP 1178 (1458)
Q Consensus 1102 ~~f~~~~g~~~~~~~~npad~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 1178 (1458)
+||+++ |.++||+++|||||+||+++...+.....||++.|++|++++++.+.+++...+..... +.....+|+.|
T Consensus 997 ~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 1075 (1394)
T TIGR00956 997 NYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAAS 1075 (1394)
T ss_pred HHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCC
Confidence 999987 77679999999999999998655444456899999999998887776665543322111 11122468999
Q ss_pred HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000506 1179 FLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVV 1258 (1458)
Q Consensus 1179 ~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~ 1258 (1458)
||+|++.|++|+++++||||.|+.+|+++++++|+++|++||++++ ++++++|++|++|+++++.++. +.+++|.|
T Consensus 1076 ~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f 1151 (1394)
T TIGR00956 1076 LWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPL-IQQYLPPF 1151 (1394)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHH-HHHhhhhH
Confidence 9999999999999999999999999999999999999999999986 5789999999999998887776 34567888
Q ss_pred HHhhhHH-HHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHH-------HHHHHHHHHHHHHHHH
Q 000506 1259 STERTVF-YRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKR-------FFWFLYMVMMSFMQFT 1330 (1458)
Q Consensus 1259 ~~er~v~-~rE~~~~~Y~~~~y~~a~~~~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~-------f~~~~~~~~~~~~~~~ 1330 (1458)
..||.+| +|||++|+|++.+|++|++++|+|+.++++++|++|+|||+||++++.. |++|+++++++.++++
T Consensus 1152 ~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 1231 (1394)
T TIGR00956 1152 VAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFS 1231 (1394)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHH
Confidence 8888886 8999999999999999999999999999999999999999999988866 9999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhCHHHHHHHHHHHHhhCCCcccccc------
Q 000506 1331 LYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEI------ 1404 (1458)
Q Consensus 1331 ~~g~~~~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~~------ 1404 (1458)
++|+++++++|+.++|+.+++++++++++||||++|+++||+||+|++|+||++|+++|++.|||+|.+..|..
T Consensus 1232 s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f 1311 (1394)
T TIGR00956 1232 TLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTF 1311 (1394)
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998754411
Q ss_pred --c-CCCC----------------------------cccHHHHHHhhhCCccCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 000506 1405 --P-GSTA----------------------------TMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFTLAITLI 1453 (1458)
Q Consensus 1405 --~-~~~~----------------------------~~~~~~~l~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~ 1453 (1458)
| |.+| ..+..+|++ .+|+++++.|+|++++++|++++ ++.++++.+.
T Consensus 1312 ~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~-~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1312 NPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLE-PISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred cCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHH-HcCCcccccccchhhhhHHHHHH-HHHHHhhheE
Confidence 1 1001 113455655 57999999999999999999988 7777777664
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-95 Score=918.53 Aligned_cols=585 Identities=24% Similarity=0.414 Sum_probs=487.6
Q ss_pred CCeEEEEeeeeeEeecchh----------------hhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhc
Q 000506 852 QPLSLAFHHVNYSVDMPAE----------------MKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLA 915 (1458)
Q Consensus 852 ~~~~l~~~~l~~~~~~~~~----------------~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~ 915 (1458)
.+++++|.|++|+++.... .++.....+++++|+|||++++|||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 3678999999999864320 011122334578999999999999999999999999999999999
Q ss_pred CCcCCCceeeEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc
Q 000506 916 GRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL 995 (1458)
Q Consensus 916 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~ 995 (1458)
|+.++...+|+|.+||++... ..++.+|||+|++.+++.+||+|++.|++.++.+...+.++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 997654468999999998653 2346799999999999999999999999887766555666677889999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhh
Q 000506 996 TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1075 (1458)
Q Consensus 996 ~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~ 1075 (1458)
+|+.+|+...++||||||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999988888999999999999999999999999999999999999999999999998889999999999987789999
Q ss_pred ceEEEEecCcEEEEeCCCCcchHHHHHHHHhCCCCCCCCCCCCCcceeeeccChhhhh---------hhhhhHHHHHhhC
Q 000506 1076 DELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAEA---------QLNVDFADIYVRS 1146 (1458)
Q Consensus 1076 D~vlll~~gG~~~~~G~~~~~~~~~~~~f~~~~g~~~~~~~~npad~~l~v~~~~~~~---------~~~~~~~~~~~~s 1146 (1458)
|++++|++ |+++|.|+. +++.+||+++ |. +||+++|||||++|+++...+. .......+.|+++
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~-G~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESV-GF-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHC-CC-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 99999985 799999996 6799999999 55 5899999999999998753210 0011233455432
Q ss_pred HHHHHHHHHHHHh--cC-CCC-----CCCCCC-CCCCCCchHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHH
Q 000506 1147 SLYQRNEELIKEL--ST-PAP-----GSSDLY-FPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGL 1217 (1458)
Q Consensus 1147 ~~~~~~~~~~~~~--~~-~~~-----~~~~~~-~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~ 1217 (1458)
. .++.++.++.. .. +.. ..+... ..+.+..+||+|+.+|++|++++ |||+.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111111 00 000 000000 11235578999999999999998 99999999999999999999999
Q ss_pred HhccCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000506 1218 IFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVV 1297 (1458)
Q Consensus 1218 ~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~P~~~~~~~~ 1297 (1458)
+||+++ ..+++++.|++|+++++.++.+++++++.|+.||+||+|||++|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999874 467999999999999998888888889999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhh
Q 000506 1298 YVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWY 1377 (1458)
Q Consensus 1298 ~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~ 1377 (1458)
|.+|+|||+||++++.+||+|+++++++.++++++|+++++++||.++|+.++++++.++++|+||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hhhCHHHHHHHHHHHHhhCCCccc---ccccCCCC--cccHHHHHHhhhCCccCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 000506 1378 YWLSPVAWTLYGLVTSQVGDIEGN---VEIPGSTA--TMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFTLAITL 1452 (1458)
Q Consensus 1378 ~~isp~~y~~~~l~~~~~~~~~~~---~~~~~~~~--~~~~~~~l~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~ 1452 (1458)
+|+||++|+++|++.|||++.+.. ..|++..+ ...|. ++. ..+++....|.++++|++|+++|++++++++++
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~-~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~ 656 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCK-FVE-EDVAGQISPATSVSVLIFMFVGYRLLAYLALRR 656 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCc-cch-hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999875431 12222110 11121 222 233345568999999999999999999999998
Q ss_pred hcc
Q 000506 1453 INF 1455 (1458)
Q Consensus 1453 ~~~ 1455 (1458)
+||
T Consensus 657 ~~~ 659 (659)
T PLN03211 657 IKH 659 (659)
T ss_pred ccC
Confidence 876
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-95 Score=912.73 Aligned_cols=581 Identities=33% Similarity=0.582 Sum_probs=506.6
Q ss_pred CCeEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC-ceeeEEEEC
Q 000506 852 QPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YTEGDISIS 930 (1458)
Q Consensus 852 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~ 930 (1458)
.+..+.|+|+++..+.+.. ..+++|+||||+++|||++|||||||||||||||+|+|+..++ ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3467899999998864321 3578999999999999999999999999999999999998764 789999999
Q ss_pred CeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 931 GYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 931 g~~~~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
|++.+...+++.+|||+|||.++|++||+|+|.|+|.+|+|.+.+.++++++|+++++.+||.+++|+++|+++.+|+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 99888888999999999999999999999999999999999988999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEe
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~ 1090 (1458)
||||||+||.+|+.||+||||||||||||+.++..++++|+++|++|+|||||+|||+.+++++||++++|.+ |+++|+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 699999
Q ss_pred CCCCcchHHHHHHHHhCCCCCCCCCCCCCcceeeeccChh--hhhhh--hh--hHHHHHh-hCHHHHHHHHHHHHhcCCC
Q 000506 1091 GPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPT--AEAQL--NV--DFADIYV-RSSLYQRNEELIKELSTPA 1163 (1458)
Q Consensus 1091 G~~~~~~~~~~~~f~~~~g~~~~~~~~npad~~l~v~~~~--~~~~~--~~--~~~~~~~-~s~~~~~~~~~~~~~~~~~ 1163 (1458)
|+. +++.+||+++ |.| ||+.+|||||++|+.+.. .+... .. ...+.++ .+...+...+..+.+...
T Consensus 253 G~~----~~~~~ff~~~-G~~-~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 325 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GFP-CPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTS- 325 (613)
T ss_pred cCH----HHHHHHHHhC-CCC-CCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhcccc-
Confidence 997 6799999999 665 999999999999998842 11100 00 1111111 111111110001111111
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHHHHHHHHHHHH
Q 000506 1164 PGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAV 1243 (1458)
Q Consensus 1164 ~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~ 1243 (1458)
. ..+.....+||.|+..+++|.+++.+|||.+...|+++.+++|+++|++||++++ +..+++++.|++|+.+
T Consensus 326 ---~--~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~~ 397 (613)
T KOG0061|consen 326 ---K--KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFIL 397 (613)
T ss_pred ---c--ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHHH
Confidence 1 1111127899999999999999999999999999999999999999999999976 4566779999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHH
Q 000506 1244 FFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVM 1323 (1458)
Q Consensus 1244 ~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~ 1323 (1458)
.+..+..+...++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++...|++|+++++
T Consensus 398 ~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~ 477 (613)
T KOG0061|consen 398 SFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIIL 477 (613)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 99988888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhCHHHHHHHHHHHHhhCCCccccc
Q 000506 1324 MSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVE 1403 (1458)
Q Consensus 1324 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~ 1403 (1458)
+..+.++++|++++++.||...|..+++++...+++|+||+++.++||+||+|++|+|+++|++||++.|||++....|.
T Consensus 478 ~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~ 557 (613)
T KOG0061|consen 478 LSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCF 557 (613)
T ss_pred HHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997333331
Q ss_pred ccC-CCCcccHHHHHHhhhCCccCChhhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 000506 1404 IPG-STATMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFTLAITLINFQR 1457 (1458)
Q Consensus 1404 ~~~-~~~~~~~~~~l~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~ 1457 (1458)
..+ ..+..+..++++ .++++.++.|.++.++++|.++|++++++++++....+
T Consensus 558 ~~~~~~~~~~~~~~l~-~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 558 LSGNLCCESTGEDVLK-QLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred cCcCCcccccHHHHHH-hcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 111 123455666665 68999999999999999999999999999999754443
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-94 Score=916.77 Aligned_cols=569 Identities=30% Similarity=0.514 Sum_probs=501.9
Q ss_pred ccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC-ceeeEEEECCeeCCcccccceEEEEccCCCCCCCCC
Q 000506 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVT 957 (1458)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 957 (1458)
+++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.+...+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999987643 358999999998776667888999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000506 958 VYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPG-VDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1458)
Q Consensus 958 V~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~-~~~LSgGqrqRl~ia~aL~~~p~illLDEPTs 1036 (1458)
|+|||.|++.++.+.+...++++++++++++.+||.+++|+.+|+++ .++||||||||++||+||+.+|++||||||||
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999999888777777888899999999999999999999764 67899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCCcchHHHHHHHHhCCCCCCCCCC
Q 000506 1037 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNG 1116 (1458)
Q Consensus 1037 gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~~~~~~~~~~f~~~~g~~~~~~~ 1116 (1458)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|.||. +++.+||+++ |. +||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~-g~-~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDL-GH-PCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHc-CC-CCCCC
Confidence 9999999999999999998899999999999888999999999998 5899999997 5789999999 55 69999
Q ss_pred CCCcceeeeccChhhhhh-----hhhhHHHHHhhCHHHHHHHHHHHHhcCCCCC---CCCCCCCCCCCchHHHHHHHHHH
Q 000506 1117 YNPATWMLEISTPTAEAQ-----LNVDFADIYVRSSLYQRNEELIKELSTPAPG---SSDLYFPTQYSQPFLIQCKACFW 1188 (1458)
Q Consensus 1117 ~npad~~l~v~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Q~~~l~~ 1188 (1458)
.|||||++|+++...+.. ...++.+.|++|+.+++..+.+.....+.++ .......++|..+|+.|++.|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 999999999987543221 1235667788887776655443322211111 11111234678899999999999
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 000506 1189 KQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRE 1268 (1458)
Q Consensus 1189 R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE 1268 (1458)
|+++++||||.++.+|+++++++|+++|++||+++. ++++++++.|++|++++++++.++..+.+.++.||.+|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999986 56789999999999999999988888889999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 000506 1269 RAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAI 1348 (1458)
Q Consensus 1269 ~~~~~Y~~~~y~~a~~~~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~ 1348 (1458)
+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+||+|+++++++.++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCcchhhhhhhhhCHHHHHHHHHHHHhhCCCcc-cccccCC--CCcccHHHHHHhhhCCcc
Q 000506 1349 LSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEG-NVEIPGS--TATMTVKQLLKDSFGFKY 1425 (1458)
Q Consensus 1349 ~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~-~~~~~~~--~~~~~~~~~l~~~~g~~~ 1425 (1458)
++++++.++++|+||+++.++||+||+|++|+||++|+++|++.|||++... +|...+. .|..++ +++.+.||++.
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g-~~~l~~~g~~~ 584 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSG-EVILETLSFRN 584 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcCh-HHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999998764 3321111 123344 55666899999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 000506 1426 DFLPVVAVVKLVWLLAFVFVFTLAITLINFQRR 1458 (1458)
Q Consensus 1426 ~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1458 (1458)
+++|.+++++++|.++|++++++++|+-...+|
T Consensus 585 ~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 585 ADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999998666555
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-92 Score=954.73 Aligned_cols=566 Identities=23% Similarity=0.401 Sum_probs=497.5
Q ss_pred ccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCC--CceeeEEEECCeeCCc--ccccceEEEEccCCCCCC
Q 000506 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYTEGDISISGYPKNQ--ATFARVSGYCEQNDIHSP 954 (1458)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~ 954 (1458)
.++++|+|||+.++|||+++|+||||||||||||+|+|+..+ .+.+|+|.+||++... ..+++.++||+|+|.+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 457799999999999999999999999999999999998632 2479999999997643 234567999999999999
Q ss_pred CCCHHHHHHHHHhhhcCC----CCCHHHHHH-HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000506 955 HVTVYESLLFSAWLRLSS----DIDSKTRKM-FVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSII 1029 (1458)
Q Consensus 955 ~lTV~e~l~f~~~lr~~~----~~~~~~~~~-~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~il 1029 (1458)
.+||+|+|.|++.++.+. ..+.+++.+ .++++++.+||.+++|+.+|++.+++|||||||||+||++|+.+|+|+
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999999887653 233444333 357799999999999999999889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCCcchHHHHHHHHhCC
Q 000506 1030 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVP 1108 (1458)
Q Consensus 1030 lLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~~~~~~~~~~f~~~~ 1108 (1458)
||||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||++++|++ |+++|+||. +++.+||+++
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~l- 305 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKM- 305 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHc-
Confidence 999999999999999999999999875 999999999998789999999999985 799999986 6799999999
Q ss_pred CCCCCCCCCCCcceeeeccChhhhh----------hhhhhHHHHHhhCHHHHHHHHHHHHhcCCC---------------
Q 000506 1109 GVPRITNGYNPATWMLEISTPTAEA----------QLNVDFADIYVRSSLYQRNEELIKELSTPA--------------- 1163 (1458)
Q Consensus 1109 g~~~~~~~~npad~~l~v~~~~~~~----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--------------- 1163 (1458)
|. +||++.|||||++|+++++... ....+|++.|++|+.+++..+.+++.....
T Consensus 306 G~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1394)
T TIGR00956 306 GF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVA 384 (1394)
T ss_pred CC-CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHh
Confidence 65 6999999999999998864311 123589999999999887776654422110
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHHHHHHHHHHHH
Q 000506 1164 PGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAV 1243 (1458)
Q Consensus 1164 ~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~ 1243 (1458)
..++.....+.|..|+|+|+++|++|+++++||||.++.+|+++++++|+++|++||++++ ++++++++.|++|+++
T Consensus 385 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~ 461 (1394)
T TIGR00956 385 KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAI 461 (1394)
T ss_pred hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHH
Confidence 0011112234688999999999999999999999999999999999999999999999986 4678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHH
Q 000506 1244 FFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVM 1323 (1458)
Q Consensus 1244 ~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~ 1323 (1458)
++.++.++..+ +.+..||+||+|||.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++
T Consensus 462 ~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~ 540 (1394)
T TIGR00956 462 LFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540 (1394)
T ss_pred HHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHH
Confidence 99999887665 45668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhCHHHHHHHHHHHHhhCCCccccc
Q 000506 1324 MSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVE 1403 (1458)
Q Consensus 1324 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~ 1403 (1458)
++.++++++++++++++||..+|+.++++++.++++|+||++|+++||+||+|++|+||++|+++|++.|||++...+|.
T Consensus 541 l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~ 620 (1394)
T TIGR00956 541 ICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECS 620 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876653
Q ss_pred c--cC-----------CCC----------cccHHHHHHhhhCCccCChhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000506 1404 I--PG-----------STA----------TMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFTLAITLINF 1455 (1458)
Q Consensus 1404 ~--~~-----------~~~----------~~~~~~~l~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1455 (1458)
. |. ..| .+++.+|++..||++++|+|++++++++|+++|+++++++++++++
T Consensus 621 ~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 621 QYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 10 001 2466899998899999999999999999999999999999999873
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-90 Score=936.31 Aligned_cols=567 Identities=25% Similarity=0.421 Sum_probs=488.2
Q ss_pred ccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC-ceeeEEEECCeeCCcccccceEEEEccCCCCCCCCC
Q 000506 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVT 957 (1458)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 957 (1458)
.++++|+|||+.++|||+++|+|||||||||||++|+|+.++. ..+|+|.+||++..+...++.++||+|+|.|++.+|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 3578999999999999999999999999999999999987642 358999999998755444678999999999999999
Q ss_pred HHHHHHHHHhhhcCCC-------CCHHHH------------------------HHHHHHHHHHcCCCccccccccCCCCC
Q 000506 958 VYESLLFSAWLRLSSD-------IDSKTR------------------------KMFVDEVMDLVELEPLTNAMVGLPGVD 1006 (1458)
Q Consensus 958 V~e~l~f~~~lr~~~~-------~~~~~~------------------------~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1006 (1458)
|+|+|.|++.++.+.. ...+++ +..++++++.+||.+++|+.+|+..++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 9999999988764211 111111 124678999999999999999998899
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+++|||+.++++.||++++|++ |
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G 414 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-G 414 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-c
Confidence 9999999999999999999999999999999999999999999999986 4899999999998889999999999985 7
Q ss_pred EEEEeCCCCcchHHHHHHHHhCCCCCCCCCCCCCcceeeeccChhhh-h-----------hhhhhHHHHHhhCHHHHHHH
Q 000506 1086 QVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEISTPTAE-A-----------QLNVDFADIYVRSSLYQRNE 1153 (1458)
Q Consensus 1086 ~~~~~G~~~~~~~~~~~~f~~~~g~~~~~~~~npad~~l~v~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~ 1153 (1458)
+++|+||. +++.+||+++ |. +||++.|||||++|+++.... . ....+|++.|++|+.+++..
T Consensus 415 ~ivy~G~~----~~~~~yF~~l-Gf-~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~ 488 (1470)
T PLN03140 415 QIVYQGPR----DHILEFFESC-GF-KCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLE 488 (1470)
T ss_pred eEEEeCCH----HHHHHHHHHc-CC-CCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHH
Confidence 99999996 6799999999 65 699999999999999986432 1 11247899999999887766
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHH
Q 000506 1154 ELIKELSTPAPGSSDLYFPTQYSQPFLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQ 1233 (1458)
Q Consensus 1154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~ 1233 (1458)
+.++.........+.....+.|..+++.|++.|++|+++.+||||.++..|+++.+++|+++|++||+++.+..+..+.+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~ 568 (1470)
T PLN03140 489 NELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGA 568 (1470)
T ss_pred HHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHH
Confidence 54432111001111111234688999999999999999999999999999999999999999999999986554555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHH
Q 000506 1234 NLFGALYCAVFFLGSTNANSVMSVVSTERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAK 1313 (1458)
Q Consensus 1234 ~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~P~~~~~~~~~~~i~Y~~~g~~~~~~ 1313 (1458)
.++|++|+++++..+.++.. ++.+..||+||+|||.+++|++++|++|++++|+|+.++.+++|.+|+|||+||+++++
T Consensus 569 ~~~g~lff~~l~~~~~~~~~-l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~ 647 (1470)
T PLN03140 569 LYIGALLFSMIINMFNGFAE-LALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEAS 647 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchh
Confidence 78899999998888776544 57788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhCHHHHHHHHHHHH
Q 000506 1314 RFFWFLYMVMMSFMQFTLYGMMIVALTPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTS 1393 (1458)
Q Consensus 1314 ~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~ 1393 (1458)
+||.|+++++++.++++++++++++++|+..+|+.++++++.++++|+||+||+++||+||+|++|+||++|+++|++.|
T Consensus 648 ~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~N 727 (1470)
T PLN03140 648 RFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVN 727 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc-ccccCCCCcccHHHHHHhhhCCccC--ChhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000506 1394 QVGDIEGN-VEIPGSTATMTVKQLLKDSFGFKYD--FLPVVAVVKLVWLLAFVFVFTLAITLINF 1455 (1458)
Q Consensus 1394 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~g~~~~--~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1455 (1458)
||.+.... +.+.+. +..++.+|| +.+|+..+ |.|+++++|+||+++|.+++++++++++.
T Consensus 728 Ef~~~~~~~~~~~~~-~~~~G~~~L-~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 728 EMFAPRWMNKMASDN-STRLGTAVL-NIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred hccCccccCcccCCC-CcccHHHHH-HhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99775532 111221 134455666 67899754 56999999999999999999999999873
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-84 Score=813.70 Aligned_cols=568 Identities=25% Similarity=0.470 Sum_probs=503.1
Q ss_pred ccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC-ceeeEEEECCeeCCcccccceEEEEccCCCCCCCCC
Q 000506 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVT 957 (1458)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 957 (1458)
.+.++|+|+|+.++||+++.++||+||||||||++|+|..+.. ...|+|.+||++.+...-++.++|++|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3467999999999999999999999999999999999976532 236799999998776555788999999999999999
Q ss_pred HHHHHHHHHhhhcCCC----CCHHHHH-HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000506 958 VYESLLFSAWLRLSSD----IDSKTRK-MFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1032 (1458)
Q Consensus 958 V~e~l~f~~~lr~~~~----~~~~~~~-~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLD 1032 (1458)
|+|+|.|+++++.+.. .++.++. +..+.+++.+||.+++|++||+..+||+||||||||+||.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999998732 2222222 2678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCCcchHHHHHHHHhCCCCC
Q 000506 1033 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVP 1111 (1458)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~~~~~~~~~~f~~~~g~~ 1111 (1458)
|+|+|||+.++.++.+.||++++. +.|+++++|||+.+++++||+|++|.+ |+++|+||. +++++||+++ |.
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~-Gf- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDM-GF- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhc-Cc-
Confidence 999999999999999999999865 899999999999999999999999996 799999997 5799999998 55
Q ss_pred CCCCCCCCcceeeeccChhhhhh------------hhhhHHHHHhhCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCchH
Q 000506 1112 RITNGYNPATWMLEISTPTAEAQ------------LNVDFADIYVRSSLYQRNEELIKELSTPAPGSSDLYFPTQYSQPF 1179 (1458)
Q Consensus 1112 ~~~~~~npad~~l~v~~~~~~~~------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1179 (1458)
.||+..++|||+.++++...+.+ ...+|++.|.+|+.+++.+..++........++......+|..|+
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 69999999999999998322111 115899999999999886654433222222233334456899999
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000506 1180 LIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQKTKKQQDLQNLFGALYCAVFFLGSTNANSVMSVVS 1259 (1458)
Q Consensus 1180 ~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 1259 (1458)
|.|++.|+.|.++.+.||..|+..++++.+++|+++|++|++... .+..+.+.+.|++||++++..++.+..+ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999982 5677889999999999999999887766 5556
Q ss_pred HhhhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000506 1260 TERTVFYRERAAGMYSTLAYAFSQVLIELIYVAFQTVVYVLILYSMMGFAWKAKRFFWFLYMVMMSFMQFTLYGMMIVAL 1339 (1458)
Q Consensus 1260 ~er~v~~rE~~~~~Y~~~~y~~a~~~~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~ 1339 (1458)
+.|+||+|||...+|++++|.++.++.++|..++.+++|.+|+||++||.+++++||.|+++++++..+++++.++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhCHHHHHHHHHHHHhhCCCcccccc--cCCC---------
Q 000506 1340 TPAPQIGAILSGFFLSLWNLFSGFLIPRVQIPIWWRWYYWLSPVAWTLYGLVTSQVGDIEGNVEI--PGST--------- 1408 (1458)
Q Consensus 1340 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~~--~~~~--------- 1408 (1458)
+++...|+.++++.+....+++||+||.++||+||+|++|+||+.|++++++.|||++.+.+|.+ |+..
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998877641 1100
Q ss_pred -------C--cccHHHHHHhhhCCccCChhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000506 1409 -------A--TMTVKQLLKDSFGFKYDFLPVVAVVKLVWLLAFVFVFTLAITLINFQ 1456 (1458)
Q Consensus 1409 -------~--~~~~~~~l~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~ 1456 (1458)
| .+.+.+|++..|+|++.|.|++++|++||.++|.+++.+++.++|+-
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 0 12357788889999999999999999999999999999999999854
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-80 Score=786.12 Aligned_cols=572 Identities=26% Similarity=0.434 Sum_probs=484.6
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCCCCCCC
Q 000506 180 KRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 180 ~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 259 (1458)
+++++||+|+|++++|||+++|+|||||||||||++|+|+.+++...+|+|.+||++++....++.+|||+|+|.+++++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 44677999999999999999999999999999999999998875456899999999886545567899999999999999
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc-
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM- 338 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~- 338 (1458)
||+|||.|+++++.+... .+.+ ....++.+++.+||++++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~~-------~~~~------------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRV-------TKKE------------------------KRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCC-------CHHH------------------------HHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 999999999887643211 0111 11245778999999999999999864
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
.|||||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .++|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 789999999999999999999999999999999999999999999999986 4789999999999999999999999999
Q ss_pred CeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcchhhhhHHhhhcC
Q 000506 419 GQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAV 498 (1458)
Q Consensus 419 G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~l~~~~~~ 498 (1458)
|+++|+|+++++.+||+++||+||+..|++||+.++++..+..+ .....+.+++.+.|++++..++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSE-------NESRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccc-------cchHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 99999999999999999999999999999999999887543211 00112345666777766655544433321
Q ss_pred CcCCcC---CCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhh
Q 000506 499 PYDKSR---THPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKF 575 (1458)
Q Consensus 499 ~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~ 575 (1458)
...... .........++..+++.|++.+++|.++..+||+..+..++++.+++++++|++|++.+.+. .+....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHH
Confidence 111100 00011123456788999999999999999999999999999999999999999999987543 234556
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCcchhHHHH
Q 000506 576 YGALFFSLINLMFNGLA-ELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRL 654 (1458)
Q Consensus 576 ~g~lff~l~~~~~~~~~-~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~~~~~~~f 654 (1458)
.|++|+.++...|.++. .+.....+|++|+||+..++|++++|++++++.++|+.++.+++|.+++|||+|+.+++.+|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 78899998888887654 45566689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHHHHHHHhh
Q 000506 655 FRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEF 734 (1458)
Q Consensus 655 f~~~l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef 734 (1458)
|.+++++++++.++.++++++++++++..+|+.+++++++++++++||+++.++||+||+|++|+||+.|+++++++|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-CCCCCCCCCcccchhhhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000506 735 LDERW-SKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFL 795 (1458)
Q Consensus 735 ~~~~~-~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~ 795 (1458)
.+..+ .|...+....|...|..+++.+|+...+ .|.++++++++.++|.++++++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~--~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCccc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98776 4433222111245689999999987654 58999999999999999999999864
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-80 Score=773.84 Aligned_cols=584 Identities=29% Similarity=0.495 Sum_probs=492.0
Q ss_pred CCceEEEEeeeeEEEEEecCCCCCCCchHHHHHHHHhhhhhhcccccccccceeeeceeeEEeCCeEEEEEcCCCCcHHH
Q 000506 132 IPKIEIRYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTT 211 (1458)
Q Consensus 132 ~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKST 211 (1458)
...++++|+|+++++... . +..+++|+||||+++|||++|||||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~-~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------S-KKTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------C-CccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 356889999999886522 1 14567999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhc
Q 000506 212 LLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEA 291 (1458)
Q Consensus 212 LL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1458)
||++|+|+.++...++|+|++||++.+....++.+|||.|+|.++|++||+|++.|+|+++.+.+ +++.+
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~~~~--- 141 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LSKEE--- 141 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CCHHH---
Confidence 99999999987667899999999887777778899999999999999999999999999886542 12222
Q ss_pred CCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCC
Q 000506 292 GIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTG 371 (1458)
Q Consensus 292 ~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsg 371 (1458)
.+.+++.+++.|||.+|+||++|+...|||||||||||+||..|+.+|+||+|||||||
T Consensus 142 ---------------------k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 142 ---------------------KRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred ---------------------HHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 23467889999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHH
Q 000506 372 LDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451 (1458)
Q Consensus 372 LD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l 451 (1458)
||+.++.++++.|+++++. |+|+|+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||+..||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999987 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCch--hhhhhhhccCCCCccCCHHHHHHhhh-cchhhhhHHhhhcCCcCCcCCCccccccCCCCcchHHHHHHHHH
Q 000506 452 QEVTSKK--DQEQYWFRKDQPYRYISVSDFVQGFS-SFHVGQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFG 528 (1458)
Q Consensus 452 ~ev~s~~--~~~~~~~~~~~~~~~~s~~~~~~~~~-~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 528 (1458)
.++.+.. .++.... .........++ .....+... ........ .. ........++|.|+..+++
T Consensus 280 l~l~s~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~---~~~~~~~~s~~~q~~~L~~ 345 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA--------VRIAKLINKFSQTDNLKKTLE-ALEKSLST--SK---KVEIGTSPSWWTQFKILLK 345 (613)
T ss_pred HHHHccCCCchhHHhH--------HHHHHHhhhccccchhhhhHH-HHhhhccc--cc---ccccccCCcHHHHHHHHHH
Confidence 9988743 1110000 00000111111 000000000 00000000 00 0001116789999999999
Q ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHHHHHHHHH-HHHHHhcccchhhhc
Q 000506 529 REWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLA-ELAFTVFRLPVFFKQ 607 (1458)
Q Consensus 529 R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~-~~~~~~~~~~vf~kq 607 (1458)
|.+..++|++.+...|.+|.+++++++|.+|++.+.+...+ ....|.+||.+....+..+. .+.....++++|.||
T Consensus 346 R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE 422 (613)
T KOG0061|consen 346 RSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGI---QNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRE 422 (613)
T ss_pred HHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999986544332 35678888888877676665 577888999999999
Q ss_pred ccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 000506 608 RDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANT 687 (1458)
Q Consensus 608 r~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~r~i~~~~~~~~va~~ 687 (1458)
+.+++|+.++|++++.+.++|+.++.+++|.+++|||+|++++..+|+.+.+..++...++.+++.+++++.++...|.+
T Consensus 423 ~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~ 502 (613)
T KOG0061|consen 423 TSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATS 502 (613)
T ss_pred HhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhhhhhhccCccccc
Q 000506 688 LGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVN 767 (1458)
Q Consensus 688 ~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~ 767 (1458)
+++++++.+++++||+++.+.+|+||.|+.|+|+..|+++++++|||.+....|....+ .++...|.++++..++...+
T Consensus 503 ~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 581 (613)
T KOG0061|consen 503 LGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGN-LCCESTGEDVLKQLGFEDSS 581 (613)
T ss_pred hHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcC-CcccccHHHHHHhcCCcccc
Confidence 99999999999999999999999999999999999999999999999973333332221 23567889999988887655
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 000506 768 YWYWICIGALFGFTILFNILFIAAIQFLN 796 (1458)
Q Consensus 768 ~~~w~~~g~l~g~~i~f~~l~~~~l~~~~ 796 (1458)
.|.++.+++++.++|.+++++++++..
T Consensus 582 --~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 582 --FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred --cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 588999999999999999999998754
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-78 Score=768.45 Aligned_cols=607 Identities=20% Similarity=0.349 Sum_probs=471.7
Q ss_pred CCceEEEEeeeeEEEEEecCCCCCCCchHHHHHHHHhhhhhhcccccccccceeeeceeeEEeCCeEEEEEcCCCCcHHH
Q 000506 132 IPKIEIRYEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTT 211 (1458)
Q Consensus 132 ~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKST 211 (1458)
.+.++++|.++++.+.......+... ....+.. ....+.+.++.+++++|+|+|+++++||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~-~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSN----IKRILGH-KPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccc----ccccccc-ccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 45799999999998754310111110 0000000 001111223344577999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhc
Q 000506 212 LLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEA 291 (1458)
Q Consensus 212 LL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1458)
||++|+|+++++ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.... ..+.+
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~~~--- 177 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTKQE--- 177 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCHHH---
Confidence 999999998774 3589999999987542 24569999999999999999999999876542211 00001
Q ss_pred CCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCC
Q 000506 292 GIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTG 371 (1458)
Q Consensus 292 ~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsg 371 (1458)
....++.+++.+||++++||++|+...++|||||||||+||++|+.+|++|+|||||+|
T Consensus 178 ---------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 178 ---------------------KILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred ---------------------HHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 11235668999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHH
Q 000506 372 LDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451 (1458)
Q Consensus 372 LD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l 451 (1458)
||+.++.++++.|+++++ .++|+|+++||+..+++++||+|++|++|+++|+|+.+++.+||+++||+||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999986 4789999999988889999999999999999999999999999999999999999999999
Q ss_pred HHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcchhhhhHHhhhcC---CcCCcC-----CCc-cccccCCCCcchHHH
Q 000506 452 QEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAV---PYDKSR-----THP-AALVKNKYGISNMDL 522 (1458)
Q Consensus 452 ~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~l~~~~~~---~~~~~~-----~~~-~~~~~~~~~~s~~~~ 522 (1458)
+++++...+.+.......+ ...+++.+.|++.. .+...+.... +....+ ..+ .......+..++|.|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9998764321100000011 11233344443211 1111111100 000000 000 000112345689999
Q ss_pred HHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHHHHH-HHHHHHHHHhccc
Q 000506 523 FRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMF-NGLAELAFTVFRL 601 (1458)
Q Consensus 523 ~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~lff~l~~~~~-~~~~~~~~~~~~~ 601 (1458)
+..+++|.++. +|+..+...|+++.+++|+++|++|++++ ..+.+.+.|++||.+++.++ +.+..+.....+|
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999887 78888888999999999999999999874 22346678999999777555 5567777888999
Q ss_pred chhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000506 602 PVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRT 681 (1458)
Q Consensus 602 ~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~r~i~~~~~~ 681 (1458)
++|+|||.+++|++++|++++++.++|+.++.+++|++++|||+|+.+++++||.|++++++.+.++.+++.++++++++
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHHHHHHHhhcCCCC-----CCCCCCC--CCcccchh
Q 000506 682 EVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERW-----SKPVSDP--KIHEPTVG 754 (1458)
Q Consensus 682 ~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~-----~~~~~~~--~~~~~~~g 754 (1458)
..+|+.+++++++++++++||+++ +||+||+|++|+||+.|+++++++|||.+.+. .|..+.. ...|...+
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~ 623 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE 623 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch
Confidence 999999999999999999999996 79999999999999999999999999986542 3432110 00011222
Q ss_pred hhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 000506 755 KLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLN 796 (1458)
Q Consensus 755 ~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~ 796 (1458)
...+. ....|.+++++++++++|.++.+++|++.+
T Consensus 624 ~~~~~-------~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 624 EDVAG-------QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhhc-------ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222 234688999999999999999999997653
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-72 Score=712.10 Aligned_cols=767 Identities=21% Similarity=0.307 Sum_probs=417.9
Q ss_pred cccccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCC
Q 000506 176 LPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQN 252 (1458)
Q Consensus 176 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~ 252 (1458)
.++.+++.+||+|+|+.|++|+.++|+|||||||||++++|.++++|+ +|+|.++|+++.++.. |+++|.|+|+
T Consensus 359 sYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~Qe 435 (1228)
T KOG0055|consen 359 SYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQE 435 (1228)
T ss_pred cCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeec
Confidence 345566788999999999999999999999999999999999999998 9999999999988764 5789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccc
Q 000506 253 DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADT 332 (1458)
Q Consensus 253 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 332 (1458)
|.+|. .||+||+.|+- ||...+++.+++.+.+ ..+++. .|++..||
T Consensus 436 PvlF~-~tI~eNI~~G~-------------------------~dat~~~i~~a~k~an-----a~~fi~---~lp~g~~T 481 (1228)
T KOG0055|consen 436 PVLFA-TTIRENIRYGK-------------------------PDATREEIEEAAKAAN-----AHDFIL---KLPDGYDT 481 (1228)
T ss_pred hhhhc-ccHHHHHhcCC-------------------------CcccHHHHHHHHHHcc-----HHHHHH---hhHHhhcc
Confidence 99885 59999999852 2222333444444332 234433 48889999
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCE
Q 000506 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412 (1458)
Q Consensus 333 ~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 412 (1458)
.||+.... ||||||||++|||||+.+|+|||||||||+||+.+...+.+.|++..+ |+|+|+.. |....+-+ +|+
T Consensus 482 ~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVa-HRLStIrn-aD~ 556 (1228)
T KOG0055|consen 482 LVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVA-HRLSTIRN-ADK 556 (1228)
T ss_pred cccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEe-eehhhhhc-cCE
Confidence 99994333 999999999999999999999999999999999999999999999865 67777755 44555555 999
Q ss_pred EEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCH-HHH--HHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcch--
Q 000506 413 IILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGV-ADF--LQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFH-- 487 (1458)
Q Consensus 413 v~lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~-ad~--l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~-- 487 (1458)
|++|++|+|++.|+++|++.. .+. ++. +|+....++. ..+. .. ..++.....+.+.
T Consensus 557 I~v~~~G~IvE~G~h~ELi~~-----------~G~Y~~lv~~Q~~~~~~~~-~~~~---~~----~~~~~~~s~~~s~~~ 617 (1228)
T KOG0055|consen 557 IAVMEEGKIVEQGTHDELIAL-----------GGIYSSLVRLQELEKAAED-EEEE---ES----LKEERSRSLKSSSSS 617 (1228)
T ss_pred EEEEECCEEEEecCHHHHHhc-----------cchHHHHHHHHhhhhhhhc-cccc---cc----hhhhhhhcccccccc
Confidence 999999999999999999862 111 111 1222221110 0000 00 0000000000000
Q ss_pred --hhhh-HHhhh--cCCcCCcCCCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH---
Q 000506 488 --VGQQ-LANDL--AVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVF--- 559 (1458)
Q Consensus 488 --~~~~-l~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf--- 559 (1458)
..+. ..... ..+.++....+. .......++++.++.+. ++|..+.-.......+-....+.+++++.++
T Consensus 618 ~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~s~~~i~k~~~-pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f 694 (1228)
T KOG0055|consen 618 PSLSRGSNRSNLLSVKPEGEDPEEPV--SEEDEKVSFWRIFKLNK-PEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAF 694 (1228)
T ss_pred ccccCCcccccccccccccccccccc--ccccccccHHHHHHhcc-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 0000 00000 000000000000 01112334454444332 2332222222222222233344455555443
Q ss_pred hccCCCCCccccchhhHHHHHHHHHH----------HHHHHHHHHHHHhcccchhh---hcccCcccChh-hHHH-HHHH
Q 000506 560 FRTEMPVGNVADGAKFYGALFFSLIN----------LMFNGLAELAFTVFRLPVFF---KQRDHLFYPPW-AYAL-PIFV 624 (1458)
Q Consensus 560 ~~~~~~~~~~~~~~~~~g~lff~l~~----------~~~~~~~~~~~~~~~~~vf~---kqr~~~~y~~~-ay~l-a~~l 624 (1458)
+..+. +........+..+|.++.. .+|.-+++....-.|...|. +|....|..+- +=.+ +...
T Consensus 695 ~~~~~--~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa 772 (1228)
T KOG0055|consen 695 YPPDD--DELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLA 772 (1228)
T ss_pred hCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHh
Confidence 22221 1111111223333332221 11222222222112222222 12111111110 0001 0011
Q ss_pred HHhh---------H----HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH----HHH-
Q 000506 625 LRIP---------L----SILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEV----VAN- 686 (1458)
Q Consensus 625 ~~ip---------~----~i~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~r~i~~~~~~~~----va~- 686 (1458)
.+.| + .-+.+++..+++=|..|..-+.--...+.++ ........+++........ -|.
T Consensus 773 ~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll----~~~~~~~~~~~~~~~~~~~~~~~ea~~ 848 (1228)
T KOG0055|consen 773 TDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLL----ILSGYLQKKFLKGFSKDDKKAYEEASK 848 (1228)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1111 0 0111111111111111111111111111111 1111111111111111110 000
Q ss_pred ----HHHHHHHHHH--------HHhhheeccCCC---chhHHH---------HHHHHcHHHHHHHHHHHHhhcCCCCCCC
Q 000506 687 ----TLGTFTLLLV--------FVLGGFVIAKDD---IEPFMI---------WGYYVSPMMYGQNAIVINEFLDERWSKP 742 (1458)
Q Consensus 687 ----~~~~~~~~~~--------~l~~Gf~i~~~~---ip~~~~---------W~~~isp~~y~~~al~~nef~~~~~~~~ 742 (1458)
.+..+-.+-. -++.--...+.. -..+|. .+|++.-+.|-+.+.++.. .+
T Consensus 849 iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~----g~--- 921 (1228)
T KOG0055|consen 849 IAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISN----GE--- 921 (1228)
T ss_pred HHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc----CC---
Confidence 0000000000 000000000000 000000 1122222222222322211 00
Q ss_pred CCCCCCcccchhhhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceeecccccccccCCCCCC
Q 000506 743 VSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKKASGQPGT 822 (1458)
Q Consensus 743 ~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1458)
.+. .++.+ ++.++.+..+ ...-+..|.....+++.... ....-....
T Consensus 922 --------~~~-~~~~~----------------vf~~l~~ta~-~~~~~~s~~Pd~~ka~~Aa~----~iF~i~dr~--- 968 (1228)
T KOG0055|consen 922 --------MTF-EDVFR----------------VFMALSFTAM-ALGQASSYAPDISKAKIAAG----SIFEILDRK--- 968 (1228)
T ss_pred --------cCH-HHHHH----------------HHHHHHHHHH-HHHHHHhhCcHHHHHHHHHH----HHHHHhcCC---
Confidence 000 00000 0000000000 00111111111000000000 000000000
Q ss_pred CCCcccccccCCCCCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecC
Q 000506 823 EDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGV 902 (1458)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~ 902 (1458)
+.. ++.. ..|...+.-.-.++|+||++.|+.. +..++|+|+|++|++|+.+||+||
T Consensus 969 ------~~i-------~~~~-~~~~~~~~~~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~ 1024 (1228)
T KOG0055|consen 969 ------PTI-------DPDS-TSGGKLPNVKGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGP 1024 (1228)
T ss_pred ------CCC-------CCCC-CCCCccccceeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECC
Confidence 000 0000 1111222233479999999999754 356799999999999999999999
Q ss_pred CCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHH
Q 000506 903 SGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTR 979 (1458)
Q Consensus 903 sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~ 979 (1458)
|||||||.+.+|-+... +..|.|.|||++++. ..+|+++|.|.|+|.+|. -|++||+.|+. . +++.++
T Consensus 1025 SGsGKSTvI~LLeRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~----~-~vs~~e- 1095 (1228)
T KOG0055|consen 1025 SGSGKSTVISLLERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS----E-EVSEEE- 1095 (1228)
T ss_pred CCCCHHHHHHHHHHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC----C-CCCHHH-
Confidence 99999999999998776 589999999998754 457889999999999985 69999999981 1 234333
Q ss_pred HHHHHHHHHH-------cCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000506 980 KMFVDEVMDL-------VELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052 (1458)
Q Consensus 980 ~~~v~~~l~~-------l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~ 1052 (1458)
+.+.++. .+|.+-.||.+|..|. +||||||||++||||+++||+||+|||.||+||+++.+.|+++|.+
T Consensus 1096 ---Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~ 1171 (1228)
T KOG0055|consen 1096 ---IIEAAKLANAHNFISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDR 1171 (1228)
T ss_pred ---HHHHHHHhhhHHHHhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHH
Confidence 3333332 3566778999997665 7999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1053 TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1053 ~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
.. .|||.|+++|++| ..+.+|.|.|+++ |+|++.|+-
T Consensus 1172 a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1172 AM-EGRTTIVIAHRLS--TIQNADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred hh-cCCcEEEEecchh--hhhcCCEEEEEEC-CEEEecccH
Confidence 64 6899999999986 5678999999985 899999984
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=741.11 Aligned_cols=223 Identities=26% Similarity=0.410 Sum_probs=193.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++. +++.+|+|||+.|++||++||+||||||||||+++|+|..+ +.+|+|.++|++.
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 4889999887731 12569999999999999999999999999999999999987 4789999999986
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000506 935 NQ--ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQ 1012 (1458)
Q Consensus 935 ~~--~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1012 (1458)
.. ...++.+|||||++.+++.+||+|++.+.+.++. .+.++.++.++++++.++|.+.+|+.++ .|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHH
Confidence 42 2345679999999999999999999998776653 3344455678999999999998888765 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCC
Q 000506 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1013 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~ 1092 (1458)
||||+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+|||+++ ++...|||+++|.+ |++++.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999888999999999986 67889999999985 79999998
Q ss_pred CCcchHHHHHHH
Q 000506 1093 LGRQSQKLVEYF 1104 (1458)
Q Consensus 1093 ~~~~~~~~~~~f 1104 (1458)
. +++.+.|
T Consensus 2154 ~----q~Lk~~~ 2161 (2272)
T TIGR01257 2154 I----QHLKSKF 2161 (2272)
T ss_pred H----HHHHHHh
Confidence 6 4555555
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-67 Score=682.39 Aligned_cols=747 Identities=20% Similarity=0.266 Sum_probs=422.7
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCCCCCCCCH
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTV 261 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 261 (1458)
..+.|+|||+.|++|++++|+||.|||||+||.+|.|+++.. +|+|.++| .++||+|++|+++. ||
T Consensus 533 ~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pWI~ng-Tv 598 (1381)
T KOG0054|consen 533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPWIQNG-TV 598 (1381)
T ss_pred CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccHhhCC-cH
Confidence 344899999999999999999999999999999999999875 99999998 48999999999965 99
Q ss_pred HHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCC
Q 000506 262 RETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRG 341 (1458)
Q Consensus 262 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 341 (1458)
||||.|+.... ++.+++.+++|+++.+- + -|+.+..|.||+. +..
T Consensus 599 reNILFG~~~d-----------------------~~rY~~Vi~aC~L~~Dl---------e--~Lp~GD~TeIGEr-Gin 643 (1381)
T KOG0054|consen 599 RENILFGSPYD-----------------------EERYDKVIKACALKKDL---------E--ILPFGDLTEIGER-GIN 643 (1381)
T ss_pred HHhhhcCcccc-----------------------HHHHHHHHHHccCHhHH---------h--hcCCCCcceecCC-ccC
Confidence 99999964321 13466778888876531 1 2677889999983 223
Q ss_pred CChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCe
Q 000506 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMK-QMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 342 LSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~-~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~ 420 (1458)
||||||||+++|||++.+++|++||+|.|++|+++..+|.+..- .+- .++|+|+.. | .-+....+|.|++|++|+
T Consensus 644 LSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILVT-H-ql~~L~~ad~Iivl~~G~ 719 (1381)
T KOG0054|consen 644 LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILVT-H-QLQFLPHADQIIVLKDGK 719 (1381)
T ss_pred CcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEEe-C-chhhhhhCCEEEEecCCe
Confidence 99999999999999999999999999999999999999986443 332 245665554 4 457889999999999999
Q ss_pred EEEEcChhhHHH---HHHhcCCCCCCCCCHHHHHHHhcCchhhhhhh-hccCCCCccCCHHHHHHhhhcchhhhhHHhhh
Q 000506 421 IVYQGPREKVLE---FFEYMGFKCPDRKGVADFLQEVTSKKDQEQYW-FRKDQPYRYISVSDFVQGFSSFHVGQQLANDL 496 (1458)
Q Consensus 421 iv~~G~~~~~~~---~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~s~~~~~l~~~~ 496 (1458)
|...|+++|+.+ +|+.+ ....+.++.- ...+.+....+..+... +.........+.
T Consensus 720 I~~~Gty~el~~~~~~~~~l-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~- 779 (1381)
T KOG0054|consen 720 IVESGTYEELLKSGGDFAEL-----------------AHEEESEQEEEASEKDLESGESSRESES--RSLESLSSEEEK- 779 (1381)
T ss_pred EecccCHHHHHhcchhHHHH-----------------hhccchhhccccccccccccccccchhh--hhhhhhcccccc-
Confidence 999999999973 23322 1000000000 00000000000000000 000000000000
Q ss_pred cCCcCCcC-CCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHH-HHHHHHHHHHHHH---HHHhccCCCCCcc--
Q 000506 497 AVPYDKSR-THPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIF-KTSQITIMSLIAL---TVFFRTEMPVGNV-- 569 (1458)
Q Consensus 497 ~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~-~~~~~~i~ali~g---~vf~~~~~~~~~~-- 569 (1458)
....+.+ ........+..+.-.|.-++..++- ........+ -+.......+.++ ++=+.++......
T Consensus 780 -~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a-----~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~ 853 (1381)
T KOG0054|consen 780 -SKDEKEEEDKLVQEEERETGKVSWSVYKKYIKA-----AGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT 853 (1381)
T ss_pred -cccccchhhHHHHHHHHhcCEeeHHHHHHHHHh-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 0000000 0000000011222223333222211 000000000 0111111111111 1111222111111
Q ss_pred -ccchhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCc-
Q 000506 570 -ADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGF- 647 (1458)
Q Consensus 570 -~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~- 647 (1458)
.+...+.+. | + .+. +... -+.++ -.++++..|+
T Consensus 854 ~~~~~~~~~v-Y-~----~l~-~~~~---------------------------------~~~~~-----rs~~~~~~~l~ 888 (1381)
T KOG0054|consen 854 TVSTSFYLGV-Y-A----LLG-VASS---------------------------------LLTLL-----RSFLFAKGGLK 888 (1381)
T ss_pred CCCcchHHHH-H-H----HHH-HHHH---------------------------------HHHHH-----HHHHHHHHHHH
Confidence 011111111 0 0 000 0000 00000 0111111121
Q ss_pred ------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHhhheeccCCCchhHHHHH----
Q 000506 648 ------APAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVV-ANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWG---- 716 (1458)
Q Consensus 648 ------~~~~~~ff~~~l~~~~~~~~~~~l~r~i~~~~~~~~v-a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~---- 716 (1458)
+.-..+.++..+.+|.++..+..++||..++..-... ...+..++.. ++.+.|.++......||+.+.
T Consensus 889 aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~-~~~~l~~~~vi~~~~P~fli~~~pl 967 (1381)
T KOG0054|consen 889 ASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQS-LLNVLGILVVISYVTPWFLIAIIPL 967 (1381)
T ss_pred HHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 1223456667778899999999999999988754433 3333333333 333333333333344444332
Q ss_pred ---HHHcHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhhhhhhccCc--------------c--------ccchhhH
Q 000506 717 ---YYVSPMMYGQNAIVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGF--------------F--------TVNYWYW 771 (1458)
Q Consensus 717 ---~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~g~~~l~~~g~--------------~--------~~~~~~w 771 (1458)
||.--.+|-..+--+....+..-+.... +..+...|...++.++- . ..+.|.-
T Consensus 968 ~v~~~~~~~~Y~~tsReLkRLesitRSPi~s--h~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla 1045 (1381)
T KOG0054|consen 968 GVIYYFVQRYYLATSRELKRLESITRSPIYS--HFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLA 1045 (1381)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhcccchHHH--hHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 2222222222221111111111110000 00011122222222221 0 1112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC--CCCCCceeeccc-------------c-cccccCCCCCCCCCc--ccccccC
Q 000506 772 ICIGALFGFTILFNILFIAAIQFLNPL--GKAKPTVIEEDG-------------D-KKKKASGQPGTEDTD--MSVRSSS 833 (1458)
Q Consensus 772 ~~~g~l~g~~i~f~~l~~~~l~~~~~~--~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~--~~~~~~~ 833 (1458)
+.+-.+...++++..++.+ +...... +..+-.+++.-. . +.+..+.+...+..+ .+.+...
T Consensus 1046 ~Rle~ig~~~v~~~al~~v-l~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~ 1124 (1381)
T KOG0054|consen 1046 VRLELLGNLVVLIAALFAV-LLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEI 1124 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHH-HccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCC
Confidence 2222222222222111111 1110000 000000000000 0 000000000000000 0000000
Q ss_pred CCCCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhh
Q 000506 834 ENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDV 913 (1458)
Q Consensus 834 ~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~ 913 (1458)
+....+..||..| .++|+|++..|.. +-..+|||||++|+|||.+||+|++|||||||+++
T Consensus 1125 ~~~~pp~~WP~~G--------~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~a 1185 (1381)
T KOG0054|consen 1125 EESRPPPSWPSKG--------EIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILA 1185 (1381)
T ss_pred cCCCCCCCCCCCC--------eEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHH
Confidence 1111344567666 6899999877742 23469999999999999999999999999999999
Q ss_pred hcCCcCCCceeeEEEECCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHc
Q 000506 914 LAGRKTGGYTEGDISISGYPKNQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV 990 (1458)
Q Consensus 914 L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l 990 (1458)
|.+... +.+|+|.|||.++.+ .++|++++.+||||.+|. -|||.|| |+..+..++.++++||..
T Consensus 1186 LFRl~e--~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NL----------DPf~e~sD~~IW~ALe~~ 1252 (1381)
T KOG0054|consen 1186 LFRLVE--PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNL----------DPFDEYSDDEIWEALERC 1252 (1381)
T ss_pred HHHhcC--ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceec-Ccccccc----------CcccccCHHHHHHHHHHh
Confidence 999876 478999999999765 467889999999999885 4777776 455566677789999999
Q ss_pred CCCccc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q 000506 991 ELEPLT-------NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1063 (1458)
Q Consensus 991 ~L~~~~-------~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t 1063 (1458)
+|.+.- |+.+. ++..++|.||||.+|+||||+++++||+|||+|+++|++|...|+++||+-.+ +||||++
T Consensus 1253 ~Lk~~v~~~p~~Ld~~v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltI 1330 (1381)
T KOG0054|consen 1253 QLKDVVSSLPGGLDSEVS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTI 1330 (1381)
T ss_pred ChHHHHhhCCcCCCceec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEE
Confidence 887544 33333 34568999999999999999999999999999999999999999999999754 7999999
Q ss_pred ecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1064 IHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1064 ~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
.|+.+ ....+|||+||++ |+++++|++
T Consensus 1331 AHRl~--TVmd~DrVlVld~-G~v~EfdsP 1357 (1381)
T KOG0054|consen 1331 AHRLN--TVMDSDRVLVLDA-GRVVEFDSP 1357 (1381)
T ss_pred eeccc--hhhhcCeEEEeeC-CeEeecCCh
Confidence 99986 3446899999996 789998887
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-66 Score=615.13 Aligned_cols=474 Identities=26% Similarity=0.352 Sum_probs=364.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcccEEEECCeecCCccc-------cceEEEecCCC-
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD-LKLTGKIKYCGHEFKEFVP-------QRTCAYISQND- 253 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~-~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 253 (1458)
..+++||||++.+||+++|+|.|||||||+.++|.|++++. ...+|+|.++|.++..... .+.++||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 56999999999999999999999999999999999999876 4558999999997654432 25799999996
Q ss_pred -CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccc
Q 000506 254 -LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADT 332 (1458)
Q Consensus 254 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 332 (1458)
.+-|-+||.+-+.-..+.++...+ ++....+.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~---------------------------------~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSR---------------------------------AEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccH---------------------------------HHHHHHHHHHHHHcCCCChhhh
Confidence 466778999988765554432110 0112234558999999987655
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCE
Q 000506 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412 (1458)
Q Consensus 333 ~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 412 (1458)
+.+...|||||||||.||+||+.+|++|++||||++||+.++.+|.+.|+++.++. ++.++.++|+..-+.+++||
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~-g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQREL-GMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHc-CcEEEEEcCCHHHHHHhcCe
Confidence 45667799999999999999999999999999999999999999999999999764 57788899999999999999
Q ss_pred EEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcchhhhhH
Q 000506 413 IILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQL 492 (1458)
Q Consensus 413 v~lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~l 492 (1458)
|+||++|++++.|+++++.+. | .+||.. .+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~--------p-------------------------~hpYT~-----------------~L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN--------P-------------------------QHPYTR-----------------GL 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc--------c-------------------------CCcccH-----------------HH
Confidence 999999999999999998641 1 111100 00
Q ss_pred HhhhcCCcCCcCCCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccc
Q 000506 493 ANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADG 572 (1458)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~ 572 (1458)
.+.. |. .
T Consensus 255 l~a~--p~--------------------------------------------------------------------~--- 261 (539)
T COG1123 255 LAAV--PR--------------------------------------------------------------------L--- 261 (539)
T ss_pred HhhC--CC--------------------------------------------------------------------c---
Confidence 0000 00 0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCcchhHH
Q 000506 573 AKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAAS 652 (1458)
Q Consensus 573 ~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~~~~~~ 652 (1458)
T Consensus 262 -------------------------------------------------------------------------------- 261 (539)
T COG1123 262 -------------------------------------------------------------------------------- 261 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHHHHHHH
Q 000506 653 RLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVIN 732 (1458)
Q Consensus 653 ~ff~~~l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~n 732 (1458)
T Consensus 262 -------------------------------------------------------------------------------- 261 (539)
T COG1123 262 -------------------------------------------------------------------------------- 261 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCCCCCCCCCCCCcccchhhhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceeeccccc
Q 000506 733 EFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDK 812 (1458)
Q Consensus 733 ef~~~~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 812 (1458)
.. ..
T Consensus 262 ------------~~----------------------------------------------------------------~~ 265 (539)
T COG1123 262 ------------GD----------------------------------------------------------------EK 265 (539)
T ss_pred ------------cc----------------------------------------------------------------cc
Confidence 00 00
Q ss_pred ccccCCCCCCCCCcccccccCCCCCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccccceecccceeEEe
Q 000506 813 KKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFR 892 (1458)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~ 892 (1458)
. .. .... .. .+ ...-++++|++..+..+.... ....+...+++||||.++
T Consensus 266 ~--~~----------~~~~----~~-----------~~-~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~ 315 (539)
T COG1123 266 I--IR----------LPRR----GP-----------LR-AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLR 315 (539)
T ss_pred c--cc----------cccc----cc-----------cc-cCceeEeeeeeeeeccccccc--cccccceeeeeeeeeEec
Confidence 0 00 0000 00 00 011355666665554322111 001234679999999999
Q ss_pred CCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC--C---cccccceEEEEccCC--CCCCCCCHHHHHHHH
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK--N---QATFARVSGYCEQND--IHSPHVTVYESLLFS 965 (1458)
Q Consensus 893 ~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~--~---~~~~~~~~gyv~Q~~--~~~~~lTV~e~l~f~ 965 (1458)
+||++||+|+||||||||.++|+|+.++ .+|.|.++|.+. + ....++.+-+++||+ .+.|.+||++.+.-.
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~ep 393 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEP 393 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhH
Confidence 9999999999999999999999999874 789999999862 1 123456677788877 577999999999876
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000506 966 AWLRLSSDIDSKTRKMFVDEVMDLVELEP-LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044 (1458)
Q Consensus 966 ~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~ 1044 (1458)
...... ....++++++.++++.++|.+ ..+++ +.+||||||||++|||||+.+|++|++|||||.||+..+.
T Consensus 394 L~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa 466 (539)
T COG1123 394 LRIHGG--GSGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQA 466 (539)
T ss_pred Hhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHH
Confidence 544332 235667778999999999986 45554 4589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1045 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1045 ~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
.|.++|+++.++ |.|.|+++||.+ -+.+.|||+++|.+ |+++..||.
T Consensus 467 ~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 467 QVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred HHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-CeEEEeCCH
Confidence 999999999876 999999999987 47789999999985 899999975
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=704.97 Aligned_cols=211 Identities=22% Similarity=0.294 Sum_probs=178.5
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++|+||++.|+. +..++|+|||++|+|||.+||+|+||||||||+++|.|..+ +.+|+|.|||.++
T Consensus 1237 ~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI 1303 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCDI 1303 (1622)
T ss_pred cEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEec
Confidence 5899999998842 12359999999999999999999999999999999999877 4789999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-------LTNAMVGLPG 1004 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 1004 (1458)
.. ..+|+.++||||++.++.. |+||||.+.. +.+ ++.++++++..++.+ -.|+.+|..
T Consensus 1304 ~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~- 1371 (1622)
T PLN03130 1304 SKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEA- 1371 (1622)
T ss_pred ccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCC-
Confidence 54 4578899999999999875 9999997531 112 334677777777653 346677653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
..+||||||||++|||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~- 1447 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA- 1447 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999975 4899999999976 4567999999985
Q ss_pred cEEEEeCCCC
Q 000506 1085 GQVIYAGPLG 1094 (1458)
Q Consensus 1085 G~~~~~G~~~ 1094 (1458)
|++++.|+..
T Consensus 1448 G~IvE~Gt~~ 1457 (1622)
T PLN03130 1448 GRVVEFDTPE 1457 (1622)
T ss_pred CEEEEeCCHH
Confidence 7999999863
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-65 Score=638.09 Aligned_cols=459 Identities=23% Similarity=0.320 Sum_probs=352.2
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCcccEEEECCeecCCccc----cceEEEecCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDD--DLKLTGKIKYCGHEFKEFVP----QRTCAYISQNDLH 255 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~--~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~ 255 (1458)
++++|+|+|+++++||+++|+|||||||||||++|+|.++| + +|+|.++|+++..... ++.++||+|++.+
T Consensus 17 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (506)
T PRK13549 17 GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY---EGEIIFEGEELQASNIRDTERAGIAIIHQELAL 93 (506)
T ss_pred CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHHCCeEEEEecccc
Confidence 34699999999999999999999999999999999999986 5 8999999998865332 3569999999989
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 335 (1458)
++.+||+||+.+.......+. .+ ..+ ....++.+++.+||++..|+.++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~-~~------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 142 (506)
T PRK13549 94 VKELSVLENIFLGNEITPGGI-MD------YDA------------------------MYLRAQKLLAQLKLDINPATPVG 142 (506)
T ss_pred CCCCcHHHHhhhcccccccCC-cC------HHH------------------------HHHHHHHHHHHcCCCCCcccchh
Confidence 999999999988643211000 00 000 01124557899999988888887
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEE
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~l 415 (1458)
+ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++ .+ ++++.++|+.+++.+++|+|++
T Consensus 143 ~-----LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~-~tvi~~tH~~~~~~~~~d~v~~ 215 (506)
T PRK13549 143 N-----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HG-IACIYISHKLNEVKAISDTICV 215 (506)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCcHHHHHHhcCEEEE
Confidence 7 999999999999999999999999999999999999999999999965 34 4566678889999999999999
Q ss_pred EcCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcchhhhhHHhh
Q 000506 416 LSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLAND 495 (1458)
Q Consensus 416 L~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~l~~~ 495 (1458)
|++|++++.|+.+++.. .+ ..+
T Consensus 216 l~~G~i~~~~~~~~~~~---------------~~-----------------------------~~~-------------- 237 (506)
T PRK13549 216 IRDGRHIGTRPAAGMTE---------------DD-----------------------------IIT-------------- 237 (506)
T ss_pred EECCEEeeecccccCCH---------------HH-----------------------------HHH--------------
Confidence 99999998886543200 00 000
Q ss_pred hcCCcCCcCCCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhh
Q 000506 496 LAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKF 575 (1458)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~ 575 (1458)
+ +. + . ..
T Consensus 238 ---------------------------------~-----------------------------~~--~--~-~~------ 244 (506)
T PRK13549 238 ---------------------------------M-----------------------------MV--G--R-EL------ 244 (506)
T ss_pred ---------------------------------H-----------------------------hh--C--c-Cc------
Confidence 0 00 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 000506 576 YGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLF 655 (1458)
Q Consensus 576 ~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~~~~~~~ff 655 (1458)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHHHHHHHhhc
Q 000506 656 RQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFL 735 (1458)
Q Consensus 656 ~~~l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~ 735 (1458)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCcccchhhhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceeecccccccc
Q 000506 736 DERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKK 815 (1458)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 815 (1458)
. . .. + ..
T Consensus 245 ----------~---~-------------------------------------------~~-~-------------~~--- 251 (506)
T PRK13549 245 ----------T---A-------------------------------------------LY-P-------------RE--- 251 (506)
T ss_pred ----------c---c-------------------------------------------cc-c-------------cc---
Confidence 0 0 00 0 00
Q ss_pred cCCCCCCCCCcccccccCCCCCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCe
Q 000506 816 ASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGV 895 (1458)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge 895 (1458)
. . . + + ...++++|+++.++. .+++.+|+|+|++|++||
T Consensus 252 ------------~-------~--~---~--~------~~~l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge 289 (506)
T PRK13549 252 ------------P-------H--T---I--G------EVILEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGE 289 (506)
T ss_pred ------------c-------c--C---C--C------CceEEEecCcccccc----------ccccccccceeeEEcCCc
Confidence 0 0 0 0 0 012566777655421 012458999999999999
Q ss_pred EEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcc----cccceEEEEccCC---CCCCCCCHHHHHHHHHhh
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA----TFARVSGYCEQND---IHSPHVTVYESLLFSAWL 968 (1458)
Q Consensus 896 ~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTV~e~l~f~~~l 968 (1458)
++||+||||||||||+++|+|..++ +.+|+|.++|++.... ..++.+||++|++ .+++.+||.|++.+....
T Consensus 290 ~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~ 368 (506)
T PRK13549 290 ILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALD 368 (506)
T ss_pred EEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhh
Confidence 9999999999999999999998752 2689999999875421 2345689999995 467889999999875321
Q ss_pred hcCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 000506 969 RLSS--DIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045 (1458)
Q Consensus 969 r~~~--~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~ 1045 (1458)
.... ..+.++.++.++++++.+++. +..+..++ .|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~ 443 (506)
T PRK13549 369 RFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYE 443 (506)
T ss_pred hhccCcccChHHHHHHHHHHHHhcCccCCCcccccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHH
Confidence 1110 112333446689999999996 56676654 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCCc
Q 000506 1046 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGR 1095 (1458)
Q Consensus 1046 i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~~ 1095 (1458)
++++|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+..+
T Consensus 444 l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 491 (506)
T PRK13549 444 IYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEecccc
Confidence 99999999888999999999986 57889999999985 78888887654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=695.99 Aligned_cols=210 Identities=21% Similarity=0.289 Sum_probs=177.9
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++|+||++.|+. +.+.+|+|+|++|+|||.+||+|+||||||||+++|.|..+ +.+|+|.|||.++
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEh
Confidence 5899999999841 12469999999999999999999999999999999999877 4789999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-------LTNAMVGLPG 1004 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 1004 (1458)
.+ ..+|+.++||||++.+++. |+||||.+.. +.+ ++.++++++..++.+ -.|+.+|..
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1368 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG- 1368 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC-
Confidence 54 4578899999999999875 9999996531 122 234677788777754 346667653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
..+||||||||++|||||+++|+||+||||||+||+.++..|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~- 1444 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS- 1444 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999874 5899999999975 4567999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|++++.|+.
T Consensus 1445 G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 GQVLEYDSP 1453 (1495)
T ss_pred CEEEEECCH
Confidence 799999985
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-65 Score=636.59 Aligned_cols=459 Identities=22% Similarity=0.309 Sum_probs=350.3
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc----cceEEEecCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP----QRTCAYISQNDLHFG 257 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 257 (1458)
.+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++
T Consensus 17 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~ 93 (510)
T PRK09700 17 PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVID 93 (510)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccC
Confidence 346999999999999999999999999999999999999987 9999999998765432 246999999998999
Q ss_pred CCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCc
Q 000506 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQ 337 (1458)
Q Consensus 258 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 337 (1458)
.+||+||+.++...... .+.. ...... + ....++.+++.+||++..|+.+++
T Consensus 94 ~~tv~e~l~~~~~~~~~--~~~~-~~~~~~----------~--------------~~~~~~~~l~~~gl~~~~~~~~~~- 145 (510)
T PRK09700 94 ELTVLENLYIGRHLTKK--VCGV-NIIDWR----------E--------------MRVRAAMMLLRVGLKVDLDEKVAN- 145 (510)
T ss_pred CCcHHHHhhhccccccc--cccc-cccCHH----------H--------------HHHHHHHHHHHcCCCCCcccchhh-
Confidence 99999999875321000 0000 000000 0 011245678999999888888877
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEc
Q 000506 338 MRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417 (1458)
Q Consensus 338 ~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~ 417 (1458)
|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++++. + ++|+.++|+..++.+++|+|++|+
T Consensus 146 ----LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g-~tiiivsHd~~~~~~~~d~v~~l~ 219 (510)
T PRK09700 146 ----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-G-TAIVYISHKLAEIRRICDRYTVMK 219 (510)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999763 4 456667888999999999999999
Q ss_pred CCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcchhhhhHHhhhc
Q 000506 418 EGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLA 497 (1458)
Q Consensus 418 ~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~l~~~~~ 497 (1458)
+|++++.|+++++.. .+ ..+..
T Consensus 220 ~G~i~~~g~~~~~~~---------------~~-----------------------------~~~~~-------------- 241 (510)
T PRK09700 220 DGSSVCSGMVSDVSN---------------DD-----------------------------IVRLM-------------- 241 (510)
T ss_pred CCEEeeecchhhCCH---------------HH-----------------------------HHHHh--------------
Confidence 999999887654310 00 00000
Q ss_pred CCcCCcCCCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhhHH
Q 000506 498 VPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYG 577 (1458)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g 577 (1458)
. + ...
T Consensus 242 --------------------------------------------------------------~--~---~~~-------- 246 (510)
T PRK09700 242 --------------------------------------------------------------V--G---REL-------- 246 (510)
T ss_pred --------------------------------------------------------------c--C---CCc--------
Confidence 0 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCcchhHHHHHHH
Q 000506 578 ALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQ 657 (1458)
Q Consensus 578 ~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~~~~~~~ff~~ 657 (1458)
T Consensus 247 -------------------------------------------------------------------------------- 246 (510)
T PRK09700 247 -------------------------------------------------------------------------------- 246 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHHHHHHHhhcCC
Q 000506 658 YLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDE 737 (1458)
Q Consensus 658 ~l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 737 (1458)
...+
T Consensus 247 -------------------------------------------------------------------------~~~~--- 250 (510)
T PRK09700 247 -------------------------------------------------------------------------QNRF--- 250 (510)
T ss_pred -------------------------------------------------------------------------cccc---
Confidence 0000
Q ss_pred CCCCCCCCCCCcccchhhhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceeecccccccccC
Q 000506 738 RWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKKAS 817 (1458)
Q Consensus 738 ~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1458)
+.. .. .
T Consensus 251 ------~~~-------------------------------------------------------------~~-~------ 256 (510)
T PRK09700 251 ------NAM-------------------------------------------------------------KE-N------ 256 (510)
T ss_pred ------ccc-------------------------------------------------------------cc-c------
Confidence 000 00 0
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEE
Q 000506 818 GQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLT 897 (1458)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ 897 (1458)
.. . + .+ +..++++|+++.+ ..+|+|+|++|++||++
T Consensus 257 ----------~~------~------~-~~------~~~l~~~~l~~~~---------------~~~l~~isl~i~~Ge~~ 292 (510)
T PRK09700 257 ----------VS------N------L-AH------ETVFEVRNVTSRD---------------RKKVRDISFSVCRGEIL 292 (510)
T ss_pred ----------cc------c------C-CC------CcEEEEeCccccC---------------CCcccceeEEEcCCcEE
Confidence 00 0 0 00 0136677776431 12799999999999999
Q ss_pred EEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcc----cccceEEEEccC---CCCCCCCCHHHHHHHHHhhh-
Q 000506 898 ALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA----TFARVSGYCEQN---DIHSPHVTVYESLLFSAWLR- 969 (1458)
Q Consensus 898 al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~---~~~~~~lTV~e~l~f~~~lr- 969 (1458)
+|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.+|||+|+ ..+++.+||.|++.+....+
T Consensus 293 ~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~ 370 (510)
T PRK09700 293 GFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKD 370 (510)
T ss_pred EEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccccccc
Confidence 9999999999999999999876 4789999999875321 234579999998 45788999999998753221
Q ss_pred --cCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000506 970 --LSS--D-IDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043 (1458)
Q Consensus 970 --~~~--~-~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~ 1043 (1458)
... . ...+..++.++++++.+++. +..++.++ .|||||||||+||++|+.+|+||+|||||+|||+.++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~ 445 (510)
T PRK09700 371 GGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT-----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAK 445 (510)
T ss_pred ccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc-----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHH
Confidence 000 0 11223335678999999997 67777654 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1044 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1044 ~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
..+++.|++++++|.|||+++|++. ++.+.||++++|++ |+++..++.
T Consensus 446 ~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 446 AEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 9999999999888999999999986 57889999999986 688887765
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=632.77 Aligned_cols=450 Identities=22% Similarity=0.344 Sum_probs=348.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc----cceEEEecCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP----QRTCAYISQNDLHFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 258 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 46999999999999999999999999999999999999988 9999999998754321 3569999999989999
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
+||+||+.|+.......... ...+ ....++.+++.+||++..|..+++
T Consensus 94 ~tv~e~l~~~~~~~~~~~~~------~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-- 141 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGRI------DWKK------------------------MYAEADKLLARLNLRFSSDKLVGE-- 141 (501)
T ss_pred CcHHHHhhhccccccccCcc------CHHH------------------------HHHHHHHHHHHcCCCCCccCchhh--
Confidence 99999998864321000000 0000 011235578999999988888887
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++. + ++|+.++|+.+++.+++|+|++|++
T Consensus 142 ---LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~-~tvii~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 142 ---LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ-G-RGIVYISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999653 4 5566678888999999999999999
Q ss_pred CeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcchhhhhHHhhhcC
Q 000506 419 GQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAV 498 (1458)
Q Consensus 419 G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~l~~~~~~ 498 (1458)
|+++..|+.+++.. ++..+.+
T Consensus 217 G~i~~~~~~~~~~~--------------------------------------------~~~~~~~--------------- 237 (501)
T PRK10762 217 GQFIAEREVADLTE--------------------------------------------DSLIEMM--------------- 237 (501)
T ss_pred CEEEEecCcCcCCH--------------------------------------------HHHHHHh---------------
Confidence 99998776533200 0000000
Q ss_pred CcCCcCCCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhhHHH
Q 000506 499 PYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYGA 578 (1458)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~ 578 (1458)
+ + ...
T Consensus 238 -------------------------------------------------------------~--~---~~~--------- 242 (501)
T PRK10762 238 -------------------------------------------------------------V--G---RKL--------- 242 (501)
T ss_pred -------------------------------------------------------------c--C---CCc---------
Confidence 0 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Q 000506 579 LFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQY 658 (1458)
Q Consensus 579 lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~~~~~~~ff~~~ 658 (1458)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK10762 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHHHHHHHhhcCCC
Q 000506 659 LAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDER 738 (1458)
Q Consensus 659 l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 738 (1458)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK10762 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccchhhhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceeecccccccccCC
Q 000506 739 WSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKKASG 818 (1458)
Q Consensus 739 ~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1458)
. .. . . .
T Consensus 243 -~----~~-------------------------------------------------------~------~-~------- 248 (501)
T PRK10762 243 -E----DQ-------------------------------------------------------Y------P-R------- 248 (501)
T ss_pred -c----cc-------------------------------------------------------c------c-c-------
Confidence 0 00 0 0 0
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEE
Q 000506 819 QPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTA 898 (1458)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~a 898 (1458)
. . . + + .+..++++|++. .+|+|+|++|++||+++
T Consensus 249 ----~----~-------~------~------~-~~~~l~~~~l~~------------------~~l~~vsl~i~~Ge~~~ 282 (501)
T PRK10762 249 ----L----D-------K------A------P-GEVRLKVDNLSG------------------PGVNDVSFTLRKGEILG 282 (501)
T ss_pred ----c----c-------c------C------C-CCcEEEEeCccc------------------CCcccceEEEcCCcEEE
Confidence 0 0 0 0 0 001355666541 26999999999999999
Q ss_pred EecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcc----cccceEEEEccCC---CCCCCCCHHHHHHHHHhhhcC
Q 000506 899 LMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA----TFARVSGYCEQND---IHSPHVTVYESLLFSAWLRLS 971 (1458)
Q Consensus 899 l~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTV~e~l~f~~~lr~~ 971 (1458)
|+|||||||||||++|+|..+ +.+|+|.++|.+.... ..++.+||++|++ .+++.+||.|++.+.......
T Consensus 283 liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~ 360 (501)
T PRK10762 283 VSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFS 360 (501)
T ss_pred EecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhc
Confidence 999999999999999999876 4789999999876421 2345799999996 477889999999875321110
Q ss_pred C---CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 000506 972 S---DIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047 (1458)
Q Consensus 972 ~---~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~ 1047 (1458)
. ....++.++.++++++.+++. +..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.
T Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~ 435 (501)
T PRK10762 361 RAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIY 435 (501)
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHH
Confidence 0 112233445688999999995 56776654 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCCc
Q 000506 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGR 1095 (1458)
Q Consensus 1048 ~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~~ 1095 (1458)
+.|++++++|+|||++||++. ++.+.||++++|++ |+++..|+...
T Consensus 436 ~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 436 QLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 999999888999999999986 57889999999985 78888887654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-64 Score=682.77 Aligned_cols=216 Identities=21% Similarity=0.352 Sum_probs=179.3
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC-------------
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------- 921 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~------------- 921 (1458)
.++|+||+|.|+.. ++.++|+|+|++|+||+.+||+||||||||||+++|.|...+.
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 58999999998531 1246999999999999999999999999999999999987641
Q ss_pred ---------------------------------------ceeeEEEECCeeCCc---ccccceEEEEccCCCCCCCCCHH
Q 000506 922 ---------------------------------------YTEGDISISGYPKNQ---ATFARVSGYCEQNDIHSPHVTVY 959 (1458)
Q Consensus 922 ---------------------------------------~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTV~ 959 (1458)
+.+|+|++||+++.. ..+++.+|||+|++.+| ..|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHH
Confidence 158999999998643 46788999999999988 57999
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000506 960 ESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-------PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1032 (1458)
Q Consensus 960 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLD 1032 (1458)
|||.|+. .+.+. +.++++++..++. +-.||.+|..| ..||||||||++|||||+++|+||+||
T Consensus 1314 eNI~~g~-----~~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK-----EDATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999862 12232 2356666666553 44588898544 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhhceEEEEecC---cE-EEEeCCC
Q 000506 1033 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRG---GQ-VIYAGPL 1093 (1458)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g---G~-~~~~G~~ 1093 (1458)
||||+||+.+++.|++.|+++. .+++|+|+++|+++ ..+.+|+|++|++| |+ ++..|+.
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 9999999999999999999986 36899999999975 56789999999872 56 5578874
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=635.51 Aligned_cols=488 Identities=20% Similarity=0.235 Sum_probs=356.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCC----------cc------c-cce
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKE----------FV------P-QRT 245 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----------~~------~-~~~ 245 (1458)
.++|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|..+.. .. . ++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999987 9999999874421 01 1 246
Q ss_pred EEEecCCC--CCCCCCCHHHHHHHhhhhc-cCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHH
Q 000506 246 CAYISQND--LHFGEMTVRETMDFSGRCL-GVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLK 322 (1458)
Q Consensus 246 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~ 322 (1458)
+|||+|++ .+++.+||+||+.++.+.. +.. +.+ ....++.+++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~----------~~~------------------------~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS----------REE------------------------AMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHH
Confidence 99999997 6788899999999875532 111 000 0112455789
Q ss_pred HcCCcc---cccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEE
Q 000506 323 LLGLDI---CADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSL 399 (1458)
Q Consensus 323 ~lgL~~---~~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~ 399 (1458)
.+||++ ..+..+.+ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++..+ ++|+.+
T Consensus 152 ~~gL~~~~~~~~~~~~~-----LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g-~tvi~i 225 (623)
T PRK10261 152 QVRIPEAQTILSRYPHQ-----LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMS-MGVIFI 225 (623)
T ss_pred HCCCCChhhHHhCCCcc-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcC-CEEEEE
Confidence 999964 45677766 999999999999999999999999999999999999999999999976434 556778
Q ss_pred eCChhHHHhccCEEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCCccCCHHHH
Q 000506 400 LQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDF 479 (1458)
Q Consensus 400 ~q~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~ 479 (1458)
+|+..++.+++|+|++|++|++++.|+++++.. .|......++
T Consensus 226 tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l----------------------------- 268 (623)
T PRK10261 226 THDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRAL----------------------------- 268 (623)
T ss_pred cCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhh-----------------------------
Confidence 899999999999999999999999998876521 0000000000
Q ss_pred HHhhhcchhhhhHHhhhcCCcCCcCCCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH
Q 000506 480 VQGFSSFHVGQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVF 559 (1458)
Q Consensus 480 ~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf 559 (1458)
... . +
T Consensus 269 ~~~-------------~--~------------------------------------------------------------ 273 (623)
T PRK10261 269 LAA-------------V--P------------------------------------------------------------ 273 (623)
T ss_pred hhc-------------c--C------------------------------------------------------------
Confidence 000 0 0
Q ss_pred hccCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHH
Q 000506 560 FRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVC 639 (1458)
Q Consensus 560 ~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~ 639 (1458)
+. .....
T Consensus 274 -~~----~~~~~-------------------------------------------------------------------- 280 (623)
T PRK10261 274 -QL----GAMKG-------------------------------------------------------------------- 280 (623)
T ss_pred -cc----ccccc--------------------------------------------------------------------
Confidence 00 00000
Q ss_pred HHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHH
Q 000506 640 LTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYV 719 (1458)
Q Consensus 640 i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~i 719 (1458)
T Consensus 281 -------------------------------------------------------------------------------- 280 (623)
T PRK10261 281 -------------------------------------------------------------------------------- 280 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhhhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 000506 720 SPMMYGQNAIVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLG 799 (1458)
Q Consensus 720 sp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~~~~ 799 (1458)
.......+..
T Consensus 281 -----------------~~~~~~~~~~----------------------------------------------------- 290 (623)
T PRK10261 281 -----------------LDYPRRFPLI----------------------------------------------------- 290 (623)
T ss_pred -----------------ccCCcccccc-----------------------------------------------------
Confidence 0000000000
Q ss_pred CCCCceeecccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccc
Q 000506 800 KAKPTVIEEDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEED 879 (1458)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 879 (1458)
.. .. .... .. .. . . .. .+ .+ ...++++|+++.++..... .....+
T Consensus 291 --~~----~~-~~~~-~~----~~-----~-~----~~----~~-~~------~~~L~~~~l~~~y~~~~~~--~~~~~~ 335 (623)
T PRK10261 291 --SL----EH-PAKQ-EP----PI-----E-Q----DT----VV-DG------EPILQVRNLVTRFPLRSGL--LNRVTR 335 (623)
T ss_pred --cc----cc-cccc-Cc----cc-----c-c----cc----cc-CC------CceEEEeeeEEEEcCCCcc--ccccCC
Confidence 00 00 0000 00 00 0 0 00 00 00 1147889998877421000 000001
Q ss_pred cceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcc------cccceEEEEccCC--C
Q 000506 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA------TFARVSGYCEQND--I 951 (1458)
Q Consensus 880 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~--~ 951 (1458)
.+.+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++... .+++.++||+|++ .
T Consensus 336 ~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~ 413 (623)
T PRK10261 336 EVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYAS 413 (623)
T ss_pred ceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhh
Confidence 2469999999999999999999999999999999999976 4789999999876321 2456799999997 5
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000506 952 HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIF 1030 (1458)
Q Consensus 952 ~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~ill 1030 (1458)
+++.+||.|++.+....+. ....++.+++++++++.+||. +..++.+ ..|||||||||+||+||+.+|+|||
T Consensus 414 l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~-----~~LSgGqrQRv~iAraL~~~p~lll 486 (623)
T PRK10261 414 LDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP-----HEFSGGQRQRICIARALALNPKVII 486 (623)
T ss_pred cCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7889999999987643321 112344556789999999996 4566654 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCC
Q 000506 1031 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1031 LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~ 1094 (1458)
|||||+|||+.++..++++|++++++ |.|||++||+++ .+.+.||++++|.+ |++++.|+..
T Consensus 487 lDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~~ 549 (623)
T PRK10261 487 ADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPRR 549 (623)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999775 899999999986 57788999999985 7999998853
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-64 Score=626.53 Aligned_cols=454 Identities=21% Similarity=0.301 Sum_probs=347.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc----cceEEEecCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP----QRTCAYISQNDLHFG 257 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 257 (1458)
++++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 23 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (510)
T PRK15439 23 GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFP 99 (510)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCC
Confidence 346999999999999999999999999999999999999988 9999999998764332 246999999999999
Q ss_pred CCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCc
Q 000506 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQ 337 (1458)
Q Consensus 258 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 337 (1458)
.+||+||+.|.... .+ + ....++.+++.+||++..++.+++
T Consensus 100 ~~tv~e~l~~~~~~------~~---~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~- 140 (510)
T PRK15439 100 NLSVKENILFGLPK------RQ---A-----------------------------SMQKMKQLLAALGCQLDLDSSAGS- 140 (510)
T ss_pred CCcHHHHhhccccc------ch---H-----------------------------HHHHHHHHHHHcCCCccccCChhh-
Confidence 99999999874320 00 0 001234578999999888888877
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEc
Q 000506 338 MRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417 (1458)
Q Consensus 338 ~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~ 417 (1458)
|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++. + ++|+.++|+.+++.++||+|++|+
T Consensus 141 ----LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g-~tiiivtHd~~~~~~~~d~i~~l~ 214 (510)
T PRK15439 141 ----LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-G-VGIVFISHKLPEIRQLADRISVMR 214 (510)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999753 4 566677888999999999999999
Q ss_pred CCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcchhhhhHHhhhc
Q 000506 418 EGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLA 497 (1458)
Q Consensus 418 ~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~l~~~~~ 497 (1458)
+|++++.|+++++... +.+ +.+..
T Consensus 215 ~G~i~~~g~~~~~~~~---------------~~~-----------------------------~~~~~------------ 238 (510)
T PRK15439 215 DGTIALSGKTADLSTD---------------DII-----------------------------QAITP------------ 238 (510)
T ss_pred CCEEEEecChHHcCHH---------------HHH-----------------------------HHHhC------------
Confidence 9999999987654210 000 00000
Q ss_pred CCcCCcCCCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhhHH
Q 000506 498 VPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYG 577 (1458)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g 577 (1458)
. ... .....
T Consensus 239 ~-----~~~------------------------------------------------------------~~~~~------ 247 (510)
T PRK15439 239 A-----ARE------------------------------------------------------------KSLSA------ 247 (510)
T ss_pred c-----ccc------------------------------------------------------------ccccc------
Confidence 0 000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCcchhHHHHHHH
Q 000506 578 ALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQ 657 (1458)
Q Consensus 578 ~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~~~~~~~ff~~ 657 (1458)
..
T Consensus 248 ------------------------------~~------------------------------------------------ 249 (510)
T PRK15439 248 ------------------------------SQ------------------------------------------------ 249 (510)
T ss_pred ------------------------------cc------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHHHHHHHhhcCC
Q 000506 658 YLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDE 737 (1458)
Q Consensus 658 ~l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 737 (1458)
T Consensus 250 -------------------------------------------------------------------------------- 249 (510)
T PRK15439 250 -------------------------------------------------------------------------------- 249 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccchhhhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceeecccccccccC
Q 000506 738 RWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKKAS 817 (1458)
Q Consensus 738 ~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1458)
... . .. . ..
T Consensus 250 ~~~-----~--------------------------------------------------~~----------~-~~----- 258 (510)
T PRK15439 250 KLW-----L--------------------------------------------------EL----------P-GN----- 258 (510)
T ss_pred ccc-----c--------------------------------------------------cc----------c-cc-----
Confidence 000 0 00 0 00
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEE
Q 000506 818 GQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLT 897 (1458)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ 897 (1458)
. . . . + .+ +..++++|++. .+|+|||++|++||++
T Consensus 259 ----------~--~----~--~---~-~~------~~~l~~~~l~~------------------~~l~~isl~i~~Ge~~ 292 (510)
T PRK15439 259 ----------R--R----Q--Q---A-AG------APVLTVEDLTG------------------EGFRNISLEVRAGEIL 292 (510)
T ss_pred ----------c--c----c--c---C-CC------CceEEEeCCCC------------------CCccceeEEEcCCcEE
Confidence 0 0 0 0 0 00 01356666651 1589999999999999
Q ss_pred EEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcc----cccceEEEEccCC---CCCCCCCHHHHHHHHHhhhc
Q 000506 898 ALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA----TFARVSGYCEQND---IHSPHVTVYESLLFSAWLRL 970 (1458)
Q Consensus 898 al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTV~e~l~f~~~lr~ 970 (1458)
||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++ .+++.+||.|++......+.
T Consensus 293 ~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~ 370 (510)
T PRK15439 293 GLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRR 370 (510)
T ss_pred EEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhh
Confidence 9999999999999999999876 4689999999876431 1245699999984 47788999999864211111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000506 971 SSDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049 (1458)
Q Consensus 971 ~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~ 1049 (1458)
.........++.++++++.+++. +..++.+ +.|||||||||+||++|+.+|+||||||||+|||+.+...+++.
T Consensus 371 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~ 445 (510)
T PRK15439 371 GFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQL 445 (510)
T ss_pred ccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHH
Confidence 11011222345688999999997 6677765 47999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCC
Q 000506 1050 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1050 l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~ 1094 (1458)
|++++++|.|||+++|++. ++.+.||++++|++ |++++.|..+
T Consensus 446 l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 488 (510)
T PRK15439 446 IRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGA 488 (510)
T ss_pred HHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 9999888999999999986 68889999999985 7888888654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=624.51 Aligned_cols=461 Identities=21% Similarity=0.297 Sum_probs=347.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc----cceEEEecCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP----QRTCAYISQNDLHFG 257 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 257 (1458)
++++|+|+|+++++||+++|+|||||||||||++|+|.++|. ..+|+|.++|+++..... ++.++||+|++.+++
T Consensus 13 ~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (500)
T TIGR02633 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVP 91 (500)
T ss_pred CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCC
Confidence 356999999999999999999999999999999999998761 128999999998765332 356999999998999
Q ss_pred CCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccc-cccccC
Q 000506 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICA-DTMVGD 336 (1458)
Q Consensus 258 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~-dt~vg~ 336 (1458)
.+||+||+.+.......+...+ .. + ....++.+++.+||.+.. ++.+++
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~~ 141 (500)
T TIGR02633 92 ELSVAENIFLGNEITLPGGRMA------YN----------A--------------MYLRAKNLLRELQLDADNVTRPVGD 141 (500)
T ss_pred CCcHHHHHHhhccccccccccC------HH----------H--------------HHHHHHHHHHHcCCCCCcccCchhh
Confidence 9999999988643210000000 00 0 011245578999998764 566776
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ . +++|+.++|+.+++.++||+|++|
T Consensus 142 -----LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tviiitHd~~~~~~~~d~i~~l 214 (500)
T TIGR02633 142 -----YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-H-GVACVYISHKLNEVKAVCDTICVI 214 (500)
T ss_pred -----CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999975 3 456667788899999999999999
Q ss_pred cCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcchhhhhHHhhh
Q 000506 417 SEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDL 496 (1458)
Q Consensus 417 ~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~l~~~~ 496 (1458)
++|++++.|+++++.. ++...
T Consensus 215 ~~G~i~~~~~~~~~~~--------------------------------------------~~~~~--------------- 235 (500)
T TIGR02633 215 RDGQHVATKDMSTMSE--------------------------------------------DDIIT--------------- 235 (500)
T ss_pred eCCeEeeecCcccCCH--------------------------------------------HHHHH---------------
Confidence 9999987664321100 00000
Q ss_pred cCCcCCcCCCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhhH
Q 000506 497 AVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFY 576 (1458)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~ 576 (1458)
+ +.... .
T Consensus 236 --------------------------------~-----------------------------~~~~~-----~------- 242 (500)
T TIGR02633 236 --------------------------------M-----------------------------MVGRE-----I------- 242 (500)
T ss_pred --------------------------------H-----------------------------HhCcc-----c-------
Confidence 0 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 000506 577 GALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFR 656 (1458)
Q Consensus 577 g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~~~~~~~ff~ 656 (1458)
T Consensus 243 -------------------------------------------------------------------------------- 242 (500)
T TIGR02633 243 -------------------------------------------------------------------------------- 242 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHHHHHHHhhcC
Q 000506 657 QYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLD 736 (1458)
Q Consensus 657 ~~l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~ 736 (1458)
+
T Consensus 243 -----------------------------------------------------~-------------------------- 243 (500)
T TIGR02633 243 -----------------------------------------------------T-------------------------- 243 (500)
T ss_pred -----------------------------------------------------c--------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCcccchhhhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceeeccccccccc
Q 000506 737 ERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKKA 816 (1458)
Q Consensus 737 ~~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1458)
.. . . .
T Consensus 244 --------~~---------------------------------------------------~----------~-~----- 248 (500)
T TIGR02633 244 --------SL---------------------------------------------------Y----------P-H----- 248 (500)
T ss_pred --------cc---------------------------------------------------c----------c-c-----
Confidence 00 0 0 0
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeE
Q 000506 817 SGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVL 896 (1458)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~ 896 (1458)
. . . + .+ ...++++|+++.+.. .+++.+|+|+|++|++||+
T Consensus 249 ------~----~--~-----------~-~~------~~~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~ 288 (500)
T TIGR02633 249 ------E----P--H-----------E-IG------DVILEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEI 288 (500)
T ss_pred ------c----c--c-----------C-CC------CceEEEeCCcccccc----------cccccccccceeEEeCCcE
Confidence 0 0 0 0 00 013567777654310 0124589999999999999
Q ss_pred EEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc----ccccceEEEEccCC---CCCCCCCHHHHHHHHHhhh
Q 000506 897 TALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ----ATFARVSGYCEQND---IHSPHVTVYESLLFSAWLR 969 (1458)
Q Consensus 897 ~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~lTV~e~l~f~~~lr 969 (1458)
++|+|||||||||||++|+|..++ +.+|+|.++|++... ...++.+||++|+. .+++.+||+|++.++..-.
T Consensus 289 ~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~ 367 (500)
T TIGR02633 289 LGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKS 367 (500)
T ss_pred EEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhh
Confidence 999999999999999999998752 258999999987642 12356799999995 5788999999998753211
Q ss_pred cC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 000506 970 LS--SDIDSKTRKMFVDEVMDLVELEP-LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046 (1458)
Q Consensus 970 ~~--~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i 1046 (1458)
.. ........++.++++++.+++.+ ..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 442 (500)
T TIGR02633 368 FCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEI 442 (500)
T ss_pred hccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHH
Confidence 10 11222334566889999999964 4666654 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCC
Q 000506 1047 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1047 ~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~ 1094 (1458)
++.|++++++|.|||++||+++ ++.+.||++++|.+ |+++..++..
T Consensus 443 ~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 443 YKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 9999999888999999999986 57889999999985 6888777543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=625.50 Aligned_cols=464 Identities=20% Similarity=0.281 Sum_probs=348.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCeecCCccc-------cceEEEecCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD--LKLTGKIKYCGHEFKEFVP-------QRTCAYISQND 253 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d 253 (1458)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|. ...+|+|.++|+++..... ++.++||+|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999999861 0128999999998754321 24699999996
Q ss_pred C--CCCCCCHHHHHHHhhhhc-cCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc--
Q 000506 254 L--HFGEMTVRETMDFSGRCL-GVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI-- 328 (1458)
Q Consensus 254 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-- 328 (1458)
. +++.+||+|++.+..... +.. +.+ ....++.+++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------REA------------------------ARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHCCCCChH
Confidence 4 567789999987643211 100 000 0113456789999976
Q ss_pred -cccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHH
Q 000506 329 -CADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAY 407 (1458)
Q Consensus 329 -~~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~ 407 (1458)
..|+.+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++..+ .+|+.++|+.+++.
T Consensus 148 ~~~~~~~~~-----LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTDYPHQ-----LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELN-MGLLFITHNLSIVR 221 (529)
T ss_pred HHHhhCCcc-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcC-CeEEEEcCcHHHHH
Confidence 35777776 999999999999999999999999999999999999999999999976434 45666788889999
Q ss_pred hccCEEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcch
Q 000506 408 DLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFH 487 (1458)
Q Consensus 408 ~~~D~v~lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~ 487 (1458)
+++|+|++|++|++++.|+++++.+. |.. ..
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~~---------------------------------~~-------- 252 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PTH---------------------------------PY-------- 252 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CCC---------------------------------HH--------
Confidence 99999999999999999987654210 000 00
Q ss_pred hhhhHHhhhcCCcCCcCCCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 000506 488 VGQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVG 567 (1458)
Q Consensus 488 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~ 567 (1458)
.+.+ +...
T Consensus 253 ----------------------------------------~~~~----------------------------~~~~---- 260 (529)
T PRK15134 253 ----------------------------------------TQKL----------------------------LNSE---- 260 (529)
T ss_pred ----------------------------------------HHHH----------------------------HHhC----
Confidence 0000 0000
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCc
Q 000506 568 NVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGF 647 (1458)
Q Consensus 568 ~~~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~ 647 (1458)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHH
Q 000506 648 APAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQN 727 (1458)
Q Consensus 648 ~~~~~~ff~~~l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~ 727 (1458)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCCCCCCCCCCCCcccchhhhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceee
Q 000506 728 AIVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIE 807 (1458)
Q Consensus 728 al~~nef~~~~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~~~~~~~~~~~~ 807 (1458)
. .. .
T Consensus 261 ---------------~-~~-------------------------------------------------~----------- 264 (529)
T PRK15134 261 ---------------P-SG-------------------------------------------------D----------- 264 (529)
T ss_pred ---------------c-cc-------------------------------------------------c-----------
Confidence 0 00 0
Q ss_pred cccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccccceecccc
Q 000506 808 EDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDV 887 (1458)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 887 (1458)
. . .. . + .+ +..++++|+++.++...+. .+...+.+.+|+||
T Consensus 265 -~-~----------------~~-~-----------~-~~------~~~l~~~~l~~~~~~~~~~--~~~~~~~~~il~~i 305 (529)
T PRK15134 265 -P-V----------------PL-P-----------E-PA------SPLLDVEQLQVAFPIRKGI--LKRTVDHNVVVKNI 305 (529)
T ss_pred -c-c----------------cc-C-----------C-CC------CCcccccCcEEEeecCccc--cccccccceeeecc
Confidence 0 0 00 0 0 00 0024556666655310000 00000124699999
Q ss_pred eeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcc------cccceEEEEccCC--CCCCCCCHH
Q 000506 888 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA------TFARVSGYCEQND--IHSPHVTVY 959 (1458)
Q Consensus 888 s~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~--~~~~~lTV~ 959 (1458)
|++|++||++||+||||||||||+++|+|..+ .+|+|+++|.+.... .+++.+||++|++ .+++.+||+
T Consensus 306 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~ 382 (529)
T PRK15134 306 SFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVL 382 (529)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHH
Confidence 99999999999999999999999999999873 589999999875321 1346799999997 477889999
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000506 960 ESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1458)
Q Consensus 960 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgL 1038 (1458)
|++.++...+.. ..+.++.++.++++++.++|. +..+..+ ..|||||||||+||++|+.+|++|+|||||+||
T Consensus 383 e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 456 (529)
T PRK15134 383 QIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIILDEPTSSL 456 (529)
T ss_pred HHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEeeCCcccc
Confidence 999886533211 122344456788999999997 4566654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1039 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
|+.++..+++.|++++++ |+|||++||++. ++.+.||++++|++ |+++..|+.
T Consensus 457 D~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 457 DKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred CHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 999999999999999875 899999999986 57788999999985 789888875
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=625.33 Aligned_cols=446 Identities=24% Similarity=0.335 Sum_probs=345.2
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCcccEEEECC-----------------------ee
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKL--DDDLKLTGKIKYCG-----------------------HE 236 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~--~~~~~~~G~I~~~G-----------------------~~ 236 (1458)
++++|+|+|+.+++||+++|+|||||||||||++|+|.+ +|+ +|+|.++| .+
T Consensus 12 ~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 88 (520)
T TIGR03269 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGT 88 (520)
T ss_pred CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEecccccccccccccccccccccccccc
Confidence 346999999999999999999999999999999999997 576 89999972 22
Q ss_pred cC-------Cc------cccceEEEecCC-CCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHH
Q 000506 237 FK-------EF------VPQRTCAYISQN-DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAY 302 (1458)
Q Consensus 237 ~~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~ 302 (1458)
+. .. ..++.++||+|+ +.+++.+||+||+.|.....+... .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~----------~~-------------- 144 (520)
T TIGR03269 89 LEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEG----------KE-------------- 144 (520)
T ss_pred ccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCH----------HH--------------
Confidence 11 00 113569999997 678888999999988654322100 00
Q ss_pred HHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHH
Q 000506 303 MKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICK 382 (1458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~ 382 (1458)
....++.+++.+||++..+..+++ |||||||||+||+||+.+|++|||||||+|||+.++.++.+
T Consensus 145 ----------~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~ 209 (520)
T TIGR03269 145 ----------AVGRAVDLIEMVQLSHRITHIARD-----LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHN 209 (520)
T ss_pred ----------HHHHHHHHHHHcCChhhhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHH
Confidence 011245688999999888888777 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhh
Q 000506 383 YMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQ 462 (1458)
Q Consensus 383 ~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~ 462 (1458)
.|+++++..+ ++|+.++|+.+.+.+++|+|++|++|++++.|+++++.+.+.
T Consensus 210 ~l~~l~~~~g-~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~--------------------------- 261 (520)
T TIGR03269 210 ALEEAVKASG-ISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFM--------------------------- 261 (520)
T ss_pred HHHHHHHhcC-cEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHH---------------------------
Confidence 9999976434 556777888899999999999999999998887654311000
Q ss_pred hhhccCCCCccCCHHHHHHhhhcchhhhhHHhhhcCCcCCcCCCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHH
Q 000506 463 YWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYI 542 (1458)
Q Consensus 463 ~~~~~~~~~~~~s~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~ 542 (1458)
T Consensus 262 -------------------------------------------------------------------------------- 261 (520)
T TIGR03269 262 -------------------------------------------------------------------------------- 261 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccCcccChhhHHHHH
Q 000506 543 FKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPI 622 (1458)
Q Consensus 543 ~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~ 622 (1458)
. ..
T Consensus 262 --------------------~----~~----------------------------------------------------- 264 (520)
T TIGR03269 262 --------------------E----GV----------------------------------------------------- 264 (520)
T ss_pred --------------------h----hc-----------------------------------------------------
Confidence 0 00
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhe
Q 000506 623 FVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGF 702 (1458)
Q Consensus 623 ~l~~ip~~i~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf 702 (1458)
T Consensus 265 -------------------------------------------------------------------------------- 264 (520)
T TIGR03269 265 -------------------------------------------------------------------------------- 264 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCchhHHHHHHHHcHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhhhhhhccCccccchhhHHHHHHHHHHHH
Q 000506 703 VIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTI 782 (1458)
Q Consensus 703 ~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i 782 (1458)
+ .. .
T Consensus 265 -------~----------------------~~---------------~-------------------------------- 268 (520)
T TIGR03269 265 -------S----------------------EV---------------E-------------------------------- 268 (520)
T ss_pred -------h----------------------hh---------------c--------------------------------
Confidence 0 00 0
Q ss_pred HHHHHHHHHHHhhCCCCCCCCceeecccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCcccCCCCeEEEEeeee
Q 000506 783 LFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVN 862 (1458)
Q Consensus 783 ~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~ 862 (1458)
. . . .. + .+ ...++++|++
T Consensus 269 -----------------~--------~-~----------------~~-------------~-~~------~~~l~~~~l~ 286 (520)
T TIGR03269 269 -----------------K--------E-C----------------EV-------------E-VG------EPIIKVRNVS 286 (520)
T ss_pred -----------------c--------c-c----------------cc-------------C-CC------CceEEEeccE
Confidence 0 0 0 00 0 00 0136777887
Q ss_pred eEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEEC-Cee---CCc--
Q 000506 863 YSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISIS-GYP---KNQ-- 936 (1458)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~-g~~---~~~-- 936 (1458)
+.++.. ..+.+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.+ ...
T Consensus 287 ~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 287 KRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred EEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccc
Confidence 766310 0112469999999999999999999999999999999999876 478999996 532 111
Q ss_pred ----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-----cccccccCCCCCC
Q 000506 937 ----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-----LTNAMVGLPGVDG 1007 (1458)
Q Consensus 937 ----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-----~~~~~vg~~~~~~ 1007 (1458)
...++.+||++|++.+++.+||.|++.+...+. .+.+..++.++++++.++|.+ ..++.+ ..
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~~ 427 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYP-----DE 427 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh-----hh
Confidence 123456999999998889999999998754321 223334456889999999975 345554 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1008 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
|||||||||+||+||+.+|+||+|||||+|||+.+...+++.|++++++ |.|||+++|++. .+.+.||++++|++ |+
T Consensus 428 LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~ 505 (520)
T TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GK 505 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 899999999986 57788999999985 78
Q ss_pred EEEeCCC
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~~~G~~ 1093 (1458)
++..|+.
T Consensus 506 i~~~g~~ 512 (520)
T TIGR03269 506 IVKIGDP 512 (520)
T ss_pred EEEECCH
Confidence 8888874
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=621.10 Aligned_cols=451 Identities=22% Similarity=0.312 Sum_probs=345.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc----ccceEEEecCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV----PQRTCAYISQNDLHFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 258 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++||+|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 46999999999999999999999999999999999999987 999999999875322 24579999999989999
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
+||+||+.++......+. .... + ....++.+++.+||++..++.+++
T Consensus 94 ~tv~~~l~~~~~~~~~~~-------~~~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGI-------VNRR----------L--------------LNYEAREQLEHLGVDIDPDTPLKY-- 140 (501)
T ss_pred CCHHHHHHhcccccccCC-------CCHH----------H--------------HHHHHHHHHHHcCCCCCcCCchhh--
Confidence 999999988532100000 0000 0 011235578999998877888776
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. + ++|+.++|+.+++.+++|+|++|++
T Consensus 141 ---LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g-~tiiiitHd~~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 141 ---LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE-G-RVILYVSHRMEEIFALCDAITVFKD 215 (501)
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999998653 4 5666778888999999999999999
Q ss_pred CeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcchhhhhHHhhhcC
Q 000506 419 GQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAV 498 (1458)
Q Consensus 419 G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~l~~~~~~ 498 (1458)
|+++..++..+. .+.++..+.
T Consensus 216 G~i~~~~~~~~~-------------------------------------------~~~~~~~~~---------------- 236 (501)
T PRK11288 216 GRYVATFDDMAQ-------------------------------------------VDRDQLVQA---------------- 236 (501)
T ss_pred CEEEeecCcccc-------------------------------------------CCHHHHHHH----------------
Confidence 999864431100 000000000
Q ss_pred CcCCcCCCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhhHHH
Q 000506 499 PYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYGA 578 (1458)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~ 578 (1458)
+. . ...
T Consensus 237 ------------------------------------------------------------~~--~---~~~--------- 242 (501)
T PRK11288 237 ------------------------------------------------------------MV--G---REI--------- 242 (501)
T ss_pred ------------------------------------------------------------hc--C---CCc---------
Confidence 00 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Q 000506 579 LFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFRQY 658 (1458)
Q Consensus 579 lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~~~~~~~ff~~~ 658 (1458)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHHHHHHHhhcCCC
Q 000506 659 LAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLDER 738 (1458)
Q Consensus 659 l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 738 (1458)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccchhhhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceeecccccccccCC
Q 000506 739 WSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKKASG 818 (1458)
Q Consensus 739 ~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1458)
.. . . .
T Consensus 243 ------~~--------------------------------------------------~-----------~-~------- 247 (501)
T PRK11288 243 ------GD--------------------------------------------------I-----------Y-G------- 247 (501)
T ss_pred ------cc--------------------------------------------------c-----------c-c-------
Confidence 00 0 0 0
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEE
Q 000506 819 QPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTA 898 (1458)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~a 898 (1458)
..+. + .+ +..++++|+++ ..+|+|+|++|++||++|
T Consensus 248 ---------~~~~-----------~-~~------~~~l~~~~~~~-----------------~~~l~~isl~i~~Ge~~~ 283 (501)
T PRK11288 248 ---------YRPR-----------P-LG------EVRLRLDGLKG-----------------PGLREPISFSVRAGEIVG 283 (501)
T ss_pred ---------cccc-----------C-CC------CcEEEEecccc-----------------CCcccceeEEEeCCcEEE
Confidence 0000 0 00 11356666652 138999999999999999
Q ss_pred EecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc----ccccceEEEEccCC---CCCCCCCHHHHHHHHHhhhc-
Q 000506 899 LMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ----ATFARVSGYCEQND---IHSPHVTVYESLLFSAWLRL- 970 (1458)
Q Consensus 899 l~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~lTV~e~l~f~~~lr~- 970 (1458)
|+||||||||||+++|+|..+ +.+|+|.++|++... ...++.++|++|++ .+++.+||.|++.+......
T Consensus 284 iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~ 361 (501)
T PRK11288 284 LFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHL 361 (501)
T ss_pred EEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhc
Confidence 999999999999999999876 478999999987532 12346799999996 47889999999987532211
Q ss_pred CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 000506 971 SSD--IDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047 (1458)
Q Consensus 971 ~~~--~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~ 1047 (1458)
... ......++.++++++.+++. +..++.++ .|||||||||+||++|+.+|+||||||||+|||+.+...++
T Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 436 (501)
T PRK11288 362 RAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIY 436 (501)
T ss_pred ccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHH
Confidence 001 11223345688999999994 66777654 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCCc
Q 000506 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGR 1095 (1458)
Q Consensus 1048 ~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~~ 1095 (1458)
++|++++++|.|||++|||+. ++.+.||++++|++ |++++.|..++
T Consensus 437 ~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 482 (501)
T PRK11288 437 NVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQ 482 (501)
T ss_pred HHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 999999888999999999986 58889999999985 78999887754
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-62 Score=674.02 Aligned_cols=210 Identities=20% Similarity=0.243 Sum_probs=178.1
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++|+||+++|+. +...+|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.|||.++
T Consensus 1284 ~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI 1350 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNI 1350 (1522)
T ss_pred cEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEc
Confidence 6899999999852 11359999999999999999999999999999999999876 4789999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-------LTNAMVGLPG 1004 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 1004 (1458)
.. ..+|+.++||||++.+++. |+||||.... +.+ ++.++++++..++.+ -.|+.+|..
T Consensus 1351 ~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1418 (1522)
T TIGR00957 1351 AKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG- 1418 (1522)
T ss_pred cccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC-
Confidence 54 4578899999999999975 9999996211 122 234677888887754 346677653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
..+||||||||++|||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~- 1494 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK- 1494 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999875 5899999999975 5667999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|++++.|+.
T Consensus 1495 G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 GEVAEFGAP 1503 (1522)
T ss_pred CEEEEECCH
Confidence 799999986
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-62 Score=612.71 Aligned_cols=451 Identities=21% Similarity=0.299 Sum_probs=344.1
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc----cceEEEecCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP----QRTCAYISQNDLHFG 257 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 257 (1458)
++++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 86 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVL 86 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccccccc
Confidence 456999999999999999999999999999999999999987 9999999998754321 356999999998899
Q ss_pred CCCHHHHHHHhhh-hccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccC
Q 000506 258 EMTVRETMDFSGR-CLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD 336 (1458)
Q Consensus 258 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 336 (1458)
.+||+||+.++.. ..+... + .. + ....++.+++.+||++..++.+++
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~--~------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 134 (491)
T PRK10982 87 QRSVMDNMWLGRYPTKGMFV--D------QD----------K--------------MYRDTKAIFDELDIDIDPRAKVAT 134 (491)
T ss_pred CCCHHHHhhccccccccccc--C------HH----------H--------------HHHHHHHHHHHcCCCCCccCchhh
Confidence 9999999987532 111000 0 00 0 011245578899999888888877
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. + .+++.++|+.+++.++||+|++|
T Consensus 135 -----LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g-~tvii~tH~~~~~~~~~d~i~~l 207 (491)
T PRK10982 135 -----LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER-G-CGIVYISHKMEEIFQLCDEITIL 207 (491)
T ss_pred -----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEecCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998753 4 45666778889999999999999
Q ss_pred cCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcchhhhhHHhhh
Q 000506 417 SEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLANDL 496 (1458)
Q Consensus 417 ~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~l~~~~ 496 (1458)
++|+++..|+++++.. ++..+
T Consensus 208 ~~G~i~~~~~~~~~~~--------------------------------------------~~~~~--------------- 228 (491)
T PRK10982 208 RDGQWIATQPLAGLTM--------------------------------------------DKIIA--------------- 228 (491)
T ss_pred ECCEEEeecChhhCCH--------------------------------------------HHHHH---------------
Confidence 9999998876533100 00000
Q ss_pred cCCcCCcCCCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccchhhH
Q 000506 497 AVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFY 576 (1458)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~ 576 (1458)
+ +.... .
T Consensus 229 --------------------------------~-----------------------------~~~~~-----~------- 235 (491)
T PRK10982 229 --------------------------------M-----------------------------MVGRS-----L------- 235 (491)
T ss_pred --------------------------------H-----------------------------HhCCC-----c-------
Confidence 0 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 000506 577 GALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAASRLFR 656 (1458)
Q Consensus 577 g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~~~~~~~ff~ 656 (1458)
T Consensus 236 -------------------------------------------------------------------------------- 235 (491)
T PRK10982 236 -------------------------------------------------------------------------------- 235 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHHHHHHHhhcC
Q 000506 657 QYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVINEFLD 736 (1458)
Q Consensus 657 ~~l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~ 736 (1458)
. ..+
T Consensus 236 -----------------------------------------------------~---------------------~~~-- 239 (491)
T PRK10982 236 -----------------------------------------------------T---------------------QRF-- 239 (491)
T ss_pred -----------------------------------------------------c---------------------ccc--
Confidence 0 000
Q ss_pred CCCCCCCCCCCCcccchhhhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceeeccccccccc
Q 000506 737 ERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGDKKKKA 816 (1458)
Q Consensus 737 ~~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1458)
. ..
T Consensus 240 ------------------------------------------------------------------------~-~~---- 242 (491)
T PRK10982 240 ------------------------------------------------------------------------P-DK---- 242 (491)
T ss_pred ------------------------------------------------------------------------c-cc----
Confidence 0 00
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeE
Q 000506 817 SGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVL 896 (1458)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~ 896 (1458)
. . . + .+..++++|+++.. +.+|+|||+.+++||+
T Consensus 243 ------~----~----------~---~--------~~~~i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~ 276 (491)
T PRK10982 243 ------E----N----------K---P--------GEVILEVRNLTSLR---------------QPSIRDVSFDLHKGEI 276 (491)
T ss_pred ------c----C----------C---C--------CCcEEEEeCccccc---------------CcccceeeEEEeCCcE
Confidence 0 0 0 0 01136777776631 2489999999999999
Q ss_pred EEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcc----cccceEEEEccCCC---CCCCCCHHHHHHHHHh--
Q 000506 897 TALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA----TFARVSGYCEQNDI---HSPHVTVYESLLFSAW-- 967 (1458)
Q Consensus 897 ~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~---~~~~lTV~e~l~f~~~-- 967 (1458)
++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.+||++|+.. +++.+|+.++..+...
T Consensus 277 ~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 354 (491)
T PRK10982 277 LGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRN 354 (491)
T ss_pred EEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhh
Confidence 99999999999999999999876 4789999999876432 12456899999853 6788888877433210
Q ss_pred hhcCCC-CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 000506 968 LRLSSD-IDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045 (1458)
Q Consensus 968 lr~~~~-~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~ 1045 (1458)
...... ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+||+|||||+|||+.++..
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~ 429 (491)
T PRK10982 355 YKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFE 429 (491)
T ss_pred hcccccccCcHHHHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHH
Confidence 000001 12233345678899999995 4556654 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCC
Q 000506 1046 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1046 i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~ 1094 (1458)
+++.|+++.++|+|||++||+++ ++.+.||++++|++ |+++..++.+
T Consensus 430 ~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 430 IYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred HHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 99999999888999999999986 57789999999986 7888766553
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=652.14 Aligned_cols=210 Identities=23% Similarity=0.267 Sum_probs=178.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++|+||+++|+. +...+|+|||++|+|||.+||+|+||||||||+++|.|..+ +.+|+|.+||+++
T Consensus 1308 ~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~di 1374 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGREI 1374 (1560)
T ss_pred eEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEc
Confidence 6999999999842 12359999999999999999999999999999999999887 4789999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL-------TNAMVGLPG 1004 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 1004 (1458)
.. ..+++.+|||||++.++.. ||+|||... .+.+ ++.++++++..++.+. .|+.+|..
T Consensus 1375 ~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~- 1442 (1560)
T PTZ00243 1375 GAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG- 1442 (1560)
T ss_pred ccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC-
Confidence 54 4678899999999999865 999999531 1222 3457888888888653 46777753
Q ss_pred CCCCCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEec
Q 000506 1005 VDGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1083 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~-p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~ 1083 (1458)
..+||||||||++|||||+++ |+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1443 G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~ 1519 (1560)
T PTZ00243 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDH 1519 (1560)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEEC
Confidence 357999999999999999996 89999999999999999999999999864 4799999999974 5678999999985
Q ss_pred CcEEEEeCCC
Q 000506 1084 GGQVIYAGPL 1093 (1458)
Q Consensus 1084 gG~~~~~G~~ 1093 (1458)
|+++..|+.
T Consensus 1520 -G~VvE~Gt~ 1528 (1560)
T PTZ00243 1520 -GAVAEMGSP 1528 (1560)
T ss_pred -CEEEEECCH
Confidence 799999985
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=654.71 Aligned_cols=209 Identities=21% Similarity=0.264 Sum_probs=177.8
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++|+||++.|+. +...+|+|||++|+|||.+||+|+||||||||+++|+|... .+|+|.|||.++
T Consensus 1217 ~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di 1282 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSW 1282 (1490)
T ss_pred eEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEc
Confidence 6899999999852 12469999999999999999999999999999999999874 589999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-------LTNAMVGLPG 1004 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 1004 (1458)
.. ..+|+.++||||++.+++. ||||||.... .. .++.++++++.++|.+ -.|+.+|..
T Consensus 1283 ~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~- 1350 (1490)
T TIGR01271 1283 NSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG- 1350 (1490)
T ss_pred ccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCccccccccccC-
Confidence 54 4577899999999999975 9999995321 11 2345788899888854 346677643
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
..+||||||||++|||||+++|+||+||||||+||..+...|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~- 1426 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG- 1426 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999875 4799999999975 5567999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|+++..|++
T Consensus 1427 G~ivE~g~p 1435 (1490)
T TIGR01271 1427 SSVKQYDSI 1435 (1490)
T ss_pred CEEEEeCCH
Confidence 799998875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=601.46 Aligned_cols=447 Identities=19% Similarity=0.273 Sum_probs=331.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc---ccceEEEecCCCCC--C-
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV---PQRTCAYISQNDLH--F- 256 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~--~- 256 (1458)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.. +
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLS 92 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhcc
Confidence 45999999999999999999999999999999999999987 999999997764322 13459999998542 1
Q ss_pred -----CCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccc
Q 000506 257 -----GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICAD 331 (1458)
Q Consensus 257 -----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 331 (1458)
..+||+|++.+.. + ....++.+++.+||++..|
T Consensus 93 ~~~~~~~~~~~~~~~~~~-------------~-----------------------------~~~~~~~~l~~~~l~~~~~ 130 (490)
T PRK10938 93 PGEDDTGRTTAEIIQDEV-------------K-----------------------------DPARCEQLAQQFGITALLD 130 (490)
T ss_pred cchhhccccHHHhcccch-------------h-----------------------------HHHHHHHHHHHcCCHhhhh
Confidence 1457777764310 0 0012345789999998888
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
..+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. + ++|+.++|+.+++.+++|
T Consensus 131 ~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g-~tvii~tH~~~~~~~~~d 203 (490)
T PRK10938 131 RRFKY-----LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-G-ITLVLVLNRFDEIPDFVQ 203 (490)
T ss_pred CCccc-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-C-CeEEEEeCCHHHHHhhCC
Confidence 88887 9999999999999999999999999999999999999999999999763 4 455667788899999999
Q ss_pred EEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcchhhhh
Q 000506 412 NIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQ 491 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~ 491 (1458)
+|++|++|+++.+|+++++.+ . +.+..+.
T Consensus 204 ~v~~l~~G~i~~~~~~~~~~~-----------~----~~~~~~~------------------------------------ 232 (490)
T PRK10938 204 FAGVLADCTLAETGEREEILQ-----------Q----ALVAQLA------------------------------------ 232 (490)
T ss_pred EEEEEECCEEEEeCCHHHHhc-----------c----hhhhhhh------------------------------------
Confidence 999999999999988765421 0 0000000
Q ss_pred HHhhhcCCcCCcCCCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccc
Q 000506 492 LANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVAD 571 (1458)
Q Consensus 492 l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~ 571 (1458)
.+ ....
T Consensus 233 ------------------------------------~~-------------------------------------~~~~- 238 (490)
T PRK10938 233 ------------------------------------HS-------------------------------------EQLE- 238 (490)
T ss_pred ------------------------------------hh-------------------------------------hccC-
Confidence 00 0000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCcchhH
Q 000506 572 GAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAA 651 (1458)
Q Consensus 572 ~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~~~~~ 651 (1458)
T Consensus 239 -------------------------------------------------------------------------------- 238 (490)
T PRK10938 239 -------------------------------------------------------------------------------- 238 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHHHHHH
Q 000506 652 SRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVI 731 (1458)
Q Consensus 652 ~~ff~~~l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 731 (1458)
T Consensus 239 -------------------------------------------------------------------------------- 238 (490)
T PRK10938 239 -------------------------------------------------------------------------------- 238 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCCCCCCCCCCCCCcccchhhhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceeecccc
Q 000506 732 NEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGD 811 (1458)
Q Consensus 732 nef~~~~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~~~~~~~~~~~~~~~~ 811 (1458)
.. . .+. .
T Consensus 239 ----~~--~--~~~-----------------------------------------------------------------~ 245 (490)
T PRK10938 239 ----GV--Q--LPE-----------------------------------------------------------------P 245 (490)
T ss_pred ----cc--c--cCc-----------------------------------------------------------------c
Confidence 00 0 000 0
Q ss_pred cccccCCCCCCCCCcccccccCCCCCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccccceecccceeEE
Q 000506 812 KKKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVF 891 (1458)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i 891 (1458)
... .... . . + . ....++++|+++.++ ++.+|+|+|+++
T Consensus 246 ~~~-------------~~~~----~--~---~-~------~~~~l~~~~l~~~~~-------------~~~il~~vsl~i 283 (490)
T PRK10938 246 DEP-------------SARH----A--L---P-A------NEPRIVLNNGVVSYN-------------DRPILHNLSWQV 283 (490)
T ss_pred ccc-------------cccc----c--c---C-C------CCceEEEeceEEEEC-------------CeeEEeeceEEE
Confidence 000 0000 0 0 0 0 011478888887763 245899999999
Q ss_pred eCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc----ccccceEEEEccCCCCCC--CCCHHHHHHHH
Q 000506 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ----ATFARVSGYCEQNDIHSP--HVTVYESLLFS 965 (1458)
Q Consensus 892 ~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~--~lTV~e~l~f~ 965 (1458)
++||+++|+||||||||||+++|+|..++ ..+|+|.++|.+... ...++.+||++|++.++. ..|+++++.+.
T Consensus 284 ~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~ 362 (490)
T PRK10938 284 NPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSG 362 (490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhc
Confidence 99999999999999999999999997531 258999999976421 123467999999876543 35777766543
Q ss_pred Hhh--hcCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 000506 966 AWL--RLSSDIDSKTRKMFVDEVMDLVELEP-LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042 (1458)
Q Consensus 966 ~~l--r~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~ 1042 (1458)
... ....... ++.++.++++++.++|.+ ..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.+
T Consensus 363 ~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~ 436 (490)
T PRK10938 363 FFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLN 436 (490)
T ss_pred cccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 211 1111111 223456889999999987 677665 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEecCccHHHHH-hhceEEEEecCcEEEEe
Q 000506 1043 AAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDELLLMKRGGQVIYA 1090 (1458)
Q Consensus 1043 ~~~i~~~l~~~~~~g-~tvi~t~Hq~s~~i~~-~~D~vlll~~gG~~~~~ 1090 (1458)
+..+++.|++++++| .|||+++|+++ ++.+ .+|++++|++ |++++.
T Consensus 437 ~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~ 484 (490)
T PRK10938 437 RQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRY 484 (490)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEe
Confidence 999999999998776 47999999986 4655 5899999986 565554
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-59 Score=518.06 Aligned_cols=470 Identities=23% Similarity=0.323 Sum_probs=365.9
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCcccEEEECCeecCCcccc-------ceEEEecC
Q 000506 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDD--DLKLTGKIKYCGHEFKEFVPQ-------RTCAYISQ 251 (1458)
Q Consensus 181 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~--~~~~~G~I~~~G~~~~~~~~~-------~~~~yv~Q 251 (1458)
+...++++|||.+++||.++|+|.||||||-..+.+.|+++. ....+|+|.|+|+++-....+ ..|++++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 456799999999999999999999999999999999999976 335589999999987554321 46999999
Q ss_pred CC--CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccc
Q 000506 252 ND--LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDIC 329 (1458)
Q Consensus 252 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~ 329 (1458)
+| .+.|-.|+..-+.-..++... +++++ .+.++-.+|+..|+.+-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------~~~~~------------------------Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------LSRAA------------------------ARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------ccHHH------------------------HHHHHHHHHHHcCCCch
Confidence 97 477777888877665554311 11111 12234457888888765
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhc
Q 000506 330 ADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDL 409 (1458)
Q Consensus 330 ~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~ 409 (1458)
...+ +.+...|||||||||.||.||+++|++|+-||||++||.....+|.+.|+++.++.+ ..++.|+|+..-+-++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~g-Ma~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELG-MAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhC-cEEEEEeccHHHHHHh
Confidence 4333 445666999999999999999999999999999999999999999999999988764 6777789999999999
Q ss_pred cCEEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcchhh
Q 000506 410 FDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVG 489 (1458)
Q Consensus 410 ~D~v~lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~ 489 (1458)
+|||+||.+|+++++|+++.+.. .|. .||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~Pq-------------------------HpYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQ-------------------------HPYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCC-------------------------ChHH-----------------
Confidence 99999999999999999877632 111 0100
Q ss_pred hhHHhhhcCCcCCcCCCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCCcc
Q 000506 490 QQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNV 569 (1458)
Q Consensus 490 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~ 569 (1458)
+.+.+.
T Consensus 255 r~Ll~a-------------------------------------------------------------------------- 260 (534)
T COG4172 255 RKLLAA-------------------------------------------------------------------------- 260 (534)
T ss_pred HHHHhc--------------------------------------------------------------------------
Confidence 000000
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCcch
Q 000506 570 ADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAP 649 (1458)
Q Consensus 570 ~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~~~ 649 (1458)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHHHH
Q 000506 650 AASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAI 729 (1458)
Q Consensus 650 ~~~~ff~~~l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al 729 (1458)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCCCCCCCCCCCCcccchhhhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceeecc
Q 000506 730 VINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEED 809 (1458)
Q Consensus 730 ~~nef~~~~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~~~~~~~~~~~~~~ 809 (1458)
.|..
T Consensus 261 -------------eP~g--------------------------------------------------------------- 264 (534)
T COG4172 261 -------------EPSG--------------------------------------------------------------- 264 (534)
T ss_pred -------------CCCC---------------------------------------------------------------
Confidence 0000
Q ss_pred cccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccccceeccccee
Q 000506 810 GDKKKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSG 889 (1458)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~ 889 (1458)
. ..+ ..+..+..++.+|+...++.+..+-. ...+...++++||+
T Consensus 265 -~----------------~~p-----------------~~~~~~~ll~~~~v~v~f~i~~g~~~--r~~~~~~AVd~isl 308 (534)
T COG4172 265 -D----------------PPP-----------------LPEDAPVLLEVEDLRVWFPIKGGFLR--RTVDHLRAVDGISL 308 (534)
T ss_pred -C----------------CCC-----------------CCCCCCceEEecceEEEEecCCcccc--ccchheEEecccee
Confidence 0 000 00001224555565555544322111 01234578999999
Q ss_pred EEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc------ccccceEEEEccCCC--CCCCCCHHHH
Q 000506 890 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ------ATFARVSGYCEQNDI--HSPHVTVYES 961 (1458)
Q Consensus 890 ~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~--~~~~lTV~e~ 961 (1458)
+.++||.+||+|.||||||||=.+|.++.. .+|+|.++|+++.. ..+++.+-.|+|||. +.|.+||.|-
T Consensus 309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~---s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qI 385 (534)
T COG4172 309 TLRRGQTLGLVGESGSGKSTLGLALLRLIP---SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQI 385 (534)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHhhcC---cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHH
Confidence 999999999999999999999999999886 35999999998753 246678999999985 7799999999
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000506 962 LLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL-TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040 (1458)
Q Consensus 962 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~ 1040 (1458)
+.-+.....+ ..+..++++++.++|+++||.+- ++++ +.++|||||||++|||||+.+|++++||||||.||-
T Consensus 386 I~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~ 459 (534)
T COG4172 386 IEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459 (534)
T ss_pred hhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence 9887665543 46788999999999999999863 3443 568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1041 RAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1041 ~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
.-+.+|+++|+++.++ |.+-++++||.. -+-.+||+|+||++ |++++.||.
T Consensus 460 SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 460 SVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCH
Confidence 9999999999999754 999999999986 47789999999985 899999996
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-58 Score=582.91 Aligned_cols=201 Identities=22% Similarity=0.313 Sum_probs=165.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 488999988763 2469999999999999999999999999999999999876 47899999542
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000506 935 NQATFARVSGYCEQND-IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-LTNAMVGLPGVDGLSTEQ 1012 (1458)
Q Consensus 935 ~~~~~~~~~gyv~Q~~-~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 1012 (1458)
..+||++|++ .+++.+||+|++.+....+. .... ...++++++.+++.+ ..+..+ ..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1589999996 67789999999988643221 1111 123457899999964 456554 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEE-EeC
Q 000506 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI-YAG 1091 (1458)
Q Consensus 1013 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~-~~G 1091 (1458)
||||+||++|+.+|++|+|||||+|||+.+...+++.|+++. | |||++||++. .+.+.||++++|++||++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999873 4 8999999986 5778899999998667765 555
Q ss_pred C
Q 000506 1092 P 1092 (1458)
Q Consensus 1092 ~ 1092 (1458)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-58 Score=581.11 Aligned_cols=198 Identities=18% Similarity=0.294 Sum_probs=165.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 588999988763 2458999999999999999999999999999999999876 47899999873
Q ss_pred CcccccceEEEEccCCC--CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHH
Q 000506 935 NQATFARVSGYCEQNDI--HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~--~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgG 1011 (1458)
+.+||++|++. +.+.+||+|++.+.. .. . ..++.++++++.+++. +..+..+ ..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCcc-----cccCHH
Confidence 46899999864 456799999986421 11 1 1134578899999994 5666664 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEE-Ee
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI-YA 1090 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~-~~ 1090 (1458)
||||++||++|+.+|++|+|||||+|||+.+...+++.|+++ +.|||++||++. .+.+.||++++|++ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999987 459999999986 57788999999986 5665 77
Q ss_pred CCC
Q 000506 1091 GPL 1093 (1458)
Q Consensus 1091 G~~ 1093 (1458)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-58 Score=579.38 Aligned_cols=201 Identities=20% Similarity=0.294 Sum_probs=165.2
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--
Confidence 478899988763 2469999999999999999999999999999999999876 47899999542
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000506 935 NQATFARVSGYCEQND-IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-LTNAMVGLPGVDGLSTEQ 1012 (1458)
Q Consensus 935 ~~~~~~~~~gyv~Q~~-~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 1012 (1458)
..+||++|+. .+++.+||.|++.+...... .... +..++++++.+++.+ ..+..+ ..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1589999986 47788999999988643211 1111 123567899999964 456554 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEE-EeC
Q 000506 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI-YAG 1091 (1458)
Q Consensus 1013 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~-~~G 1091 (1458)
||||+||++|+.+|++|+|||||+|||+.+...+++.|+++. .|||++||++. .+.+.||++++|++||++. +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999873 48999999986 5777899999998666766 555
Q ss_pred C
Q 000506 1092 P 1092 (1458)
Q Consensus 1092 ~ 1092 (1458)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-55 Score=559.92 Aligned_cols=197 Identities=22% Similarity=0.334 Sum_probs=162.2
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.+.++|+++.++ ++.+|+|+|+.|++|+++||+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 478999988763 2469999999999999999999999999999999999876 47899999742
Q ss_pred CcccccceEEEEccCC--CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHH
Q 000506 935 NQATFARVSGYCEQND--IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-LTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 935 ~~~~~~~~~gyv~Q~~--~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgG 1011 (1458)
..+||++|+. .+.+..|+.+++.- . . .......+.++++.+++.. ..++.++ .||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~----~~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--A----PQELEQKLRDYLGGFGFQGDKVTEETR-----RFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--C----chhhHHHHHHHHHHcCCChhHhcCchh-----hCCHH
Confidence 2589999974 34456677776531 1 1 1122346789999999963 5666654 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEE-Ee
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI-YA 1090 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~-~~ 1090 (1458)
|||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ . .|||++|||+. .+...||++++|.+ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 3 49999999986 57788999999986 6775 78
Q ss_pred CCC
Q 000506 1091 GPL 1093 (1458)
Q Consensus 1091 G~~ 1093 (1458)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 875
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-56 Score=558.73 Aligned_cols=213 Identities=22% Similarity=0.279 Sum_probs=175.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++ + ..|+++|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 478888887652 1 24899999999999999999999999999999999876 478999885
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000506 935 NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014 (1458)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1014 (1458)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.++|.+..++.++ .|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNVK-----DLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHH
Confidence 1489999998888899999999875211 111 1246889999999887777654 79999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1015 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
||+||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++||+. .+...+|++++|+ | ++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeec
Confidence 999999999999999999999999999999999999999765 899999999986 5777899999996 4 66666664
Q ss_pred Ccc---hHHHHHHHHhCCCC
Q 000506 1094 GRQ---SQKLVEYFEAVPGV 1110 (1458)
Q Consensus 1094 ~~~---~~~~~~~f~~~~g~ 1110 (1458)
... .+.+..|++.+ ++
T Consensus 538 ~~~~~~~~~~~~~l~~~-~i 556 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL-GI 556 (590)
T ss_pred CCchhHHHHHHHHHHHc-CC
Confidence 322 24456777777 54
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-55 Score=562.16 Aligned_cols=202 Identities=25% Similarity=0.339 Sum_probs=165.3
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.+.++|+++.++ ++.+|+|+|++|++|+++||+|||||||||||++|+|..+ +.+|+|.+ |.+
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~- 381 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTK- 381 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCC-
Confidence 478999988763 2469999999999999999999999999999999999876 47899998 432
Q ss_pred CcccccceEEEEccCC-CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHH
Q 000506 935 NQATFARVSGYCEQND-IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVDGLSTEQ 1012 (1458)
Q Consensus 935 ~~~~~~~~~gyv~Q~~-~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGq 1012 (1458)
-.+||++|+. .+++.+||.|++.+.... . ... .....+.++++.+++. +..++.++ .|||||
T Consensus 382 ------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~--~~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe 445 (635)
T PRK11147 382 ------LEVAYFDQHRAELDPEKTVMDNLAEGKQE-V--MVN--GRPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGE 445 (635)
T ss_pred ------cEEEEEeCcccccCCCCCHHHHHHhhccc-c--ccc--chHHHHHHHHHhcCCCHHHHhChhh-----hCCHHH
Confidence 1589999985 578899999999875321 0 111 1133578889999986 45566554 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe-cCcEEEEeC
Q 000506 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-RGGQVIYAG 1091 (1458)
Q Consensus 1013 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~-~gG~~~~~G 1091 (1458)
||||+||++|+.+|++|||||||+|||..+...+.+.|+++ +.|||++||+.. .+...||++++|. +|....|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999886 459999999975 5778899999997 555556666
Q ss_pred CC
Q 000506 1092 PL 1093 (1458)
Q Consensus 1092 ~~ 1093 (1458)
..
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 54
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=515.35 Aligned_cols=455 Identities=24% Similarity=0.376 Sum_probs=355.1
Q ss_pred cccccccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcccc----ceEEEe
Q 000506 174 RILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ----RTCAYI 249 (1458)
Q Consensus 174 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv 249 (1458)
++..++.+..++|+|||+.+++||+++|+|.||||||||+|+|+|.++|+ +|+|.++|++.....++ .-|+.|
T Consensus 12 ~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V 88 (500)
T COG1129 12 RGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATV 88 (500)
T ss_pred ecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEE
Confidence 34456667789999999999999999999999999999999999999998 99999999988755543 459999
Q ss_pred cCCCCCCCCCCHHHHHHHhhhhccC-CchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc
Q 000506 250 SQNDLHFGEMTVRETMDFSGRCLGV-GTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI 328 (1458)
Q Consensus 250 ~Q~d~~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~ 328 (1458)
.|+..++|+|||.||+.++...... +- +.++ ........+|+.+|+..
T Consensus 89 ~QEl~L~p~LsVaeNifLgre~~~~~g~-------id~~------------------------~m~~~A~~~l~~lg~~~ 137 (500)
T COG1129 89 HQELSLVPNLSVAENIFLGREPTRRFGL-------IDRK------------------------AMRRRARELLARLGLDI 137 (500)
T ss_pred eechhccCCccHHHHhhcccccccCCCc-------cCHH------------------------HHHHHHHHHHHHcCCCC
Confidence 9999999999999999765432210 00 0000 01123455899999976
Q ss_pred cccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHh
Q 000506 329 CADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYD 408 (1458)
Q Consensus 329 ~~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~ 408 (1458)
..++.|++ ||+||||-|.||+||..++++++|||||+.|+...+.++.+.++++.. ++..++.++|..+|+++
T Consensus 138 ~~~~~v~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~Ei~~ 210 (500)
T COG1129 138 DPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDEVFE 210 (500)
T ss_pred Chhhhhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHH
Confidence 68999998 999999999999999999999999999999999999999999999976 45777888999999999
Q ss_pred ccCEEEEEcCCeEEEEcCh-hhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcch
Q 000506 409 LFDNIILLSEGQIVYQGPR-EKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFH 487 (1458)
Q Consensus 409 ~~D~v~lL~~G~iv~~G~~-~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~ 487 (1458)
+||||.||.||+++..++. .+.- .++..+
T Consensus 211 i~DritVlRDG~~v~~~~~~~~~~--------------------------------------------~~~lv~------ 240 (500)
T COG1129 211 IADRITVLRDGRVVGTRPTAAETS--------------------------------------------EDELVR------ 240 (500)
T ss_pred hcCEEEEEeCCEEeeecccccCCC--------------------------------------------HHHHHH------
Confidence 9999999999999877763 2210 000000
Q ss_pred hhhhHHhhhcCCcCCcCCCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 000506 488 VGQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVG 567 (1458)
Q Consensus 488 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~ 567 (1458)
T Consensus 241 -------------------------------------------------------------------------------- 240 (500)
T COG1129 241 -------------------------------------------------------------------------------- 240 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCc
Q 000506 568 NVADGAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGF 647 (1458)
Q Consensus 568 ~~~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~ 647 (1458)
.|+|=
T Consensus 241 ---------------------------------------------------------------------------~MvGr 245 (500)
T COG1129 241 ---------------------------------------------------------------------------LMVGR 245 (500)
T ss_pred ---------------------------------------------------------------------------HhhCc
Confidence 00000
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHH
Q 000506 648 APAASRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQN 727 (1458)
Q Consensus 648 ~~~~~~ff~~~l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~ 727 (1458)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCCCCCCCCCCCCcccchhhhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceee
Q 000506 728 AIVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIE 807 (1458)
Q Consensus 728 al~~nef~~~~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~~~~~~~~~~~~ 807 (1458)
++. ..|.
T Consensus 246 -----~~~-~~~~------------------------------------------------------------------- 252 (500)
T COG1129 246 -----ELE-DLFP------------------------------------------------------------------- 252 (500)
T ss_pred -----chh-hhcc-------------------------------------------------------------------
Confidence 000 0000
Q ss_pred cccccccccCCCCCCCCCcccccccCCCCCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccccceecccc
Q 000506 808 EDGDKKKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDV 887 (1458)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v 887 (1458)
. . . . + ...+..+++++++.. ..++|+
T Consensus 253 ---~--~----------------~----~------~------~~~~~~l~v~~l~~~-----------------~~~~dv 278 (500)
T COG1129 253 ---E--P----------------P----E------E------GIGEPVLEVRNLSGG-----------------GKVRDV 278 (500)
T ss_pred ---c--c----------------c----c------c------CCCCcEEEEecCCCC-----------------CceeCc
Confidence 0 0 0 0 0 000123555555421 147899
Q ss_pred eeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcc----cccceEEEEccCC---CCCCCCCHHH
Q 000506 888 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA----TFARVSGYCEQND---IHSPHVTVYE 960 (1458)
Q Consensus 888 s~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTV~e 960 (1458)
||++++||+++|-|--|||+|-|+++|.|..+ ..+|+|.+||++.... ..+..++|||.|. -++..++|++
T Consensus 279 Sf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~ 356 (500)
T COG1129 279 SFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAE 356 (500)
T ss_pred eeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHH
Confidence 99999999999999999999999999999654 4689999999986432 3456799999885 4778999999
Q ss_pred HHHHHHhhhcC-C-CCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000506 961 SLLFSAWLRLS-S-DIDSKTRKMFVDEVMDLVELEPLT-NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037 (1458)
Q Consensus 961 ~l~f~~~lr~~-~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsg 1037 (1458)
|+.++...+.. . -++....++.+++..+.+++.... +.. +..||||.+|||.|||.|..+|++|+|||||.|
T Consensus 357 Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRG 431 (500)
T COG1129 357 NITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILDEPTRG 431 (500)
T ss_pred heehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEECCCCcC
Confidence 99887332222 1 245555567789999999986432 344 357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEe
Q 000506 1038 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090 (1458)
Q Consensus 1038 LD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~ 1090 (1458)
+|..+..+|.+++++++++|++||+++-+.. |+..+||||+||.+ |+++-.
T Consensus 432 IDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e 482 (500)
T COG1129 432 IDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGE 482 (500)
T ss_pred cccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999975 89999999999985 677653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=527.11 Aligned_cols=200 Identities=18% Similarity=0.268 Sum_probs=159.3
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++ +++.+|+|+|++|++|++++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 488999998773 12358999999999999999999999999999999999876 47899998752
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHH
Q 000506 935 NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-LTNAMVGLPGVDGLSTEQR 1013 (1458)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqr 1013 (1458)
..+||++|+.. ..+++.++..+......+ ... ++.++++++.+++.+ ..+..+ ..||||||
T Consensus 572 ------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPM-----YTLSGGQK 633 (718)
T ss_pred ------eeEEEEecccc--ccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCc-----cccCHHHH
Confidence 35899999753 445666654332111111 111 245788999999974 455543 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEE-EeCC
Q 000506 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI-YAGP 1092 (1458)
Q Consensus 1014 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~-~~G~ 1092 (1458)
|||+||++|+.+|++|+|||||+|||+.+...+++.|++. . .|||++||++. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999999888765 3 49999999986 57778999999985 6776 7776
Q ss_pred C
Q 000506 1093 L 1093 (1458)
Q Consensus 1093 ~ 1093 (1458)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-52 Score=505.19 Aligned_cols=223 Identities=26% Similarity=0.304 Sum_probs=174.3
Q ss_pred ccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCCCCCC
Q 000506 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGE 258 (1458)
Q Consensus 179 ~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 258 (1458)
..+.+++|+|+|+.+.+|+.++|+|+||||||||||+|+|...|+ +|+|...+ .-+++|++|++...+.
T Consensus 12 ~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~ 80 (530)
T COG0488 12 AYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPE 80 (530)
T ss_pred eeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCC
Confidence 345678999999999999999999999999999999999999998 99998764 2369999999999989
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCCh---hHHHHHHHH-HHhhhchhhHHHHHHHHcCCcccccccc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP---EIDAYMKAT-ALAGQKTSLATDYVLKLLGLDICADTMV 334 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~---~~~~~~~~~-~~~~~~~~~~~~~il~~lgL~~~~dt~v 334 (1458)
.||.+.+.-+.. ...+...++...... .+++ .++.+.... .+.+...+..+..++..||+... ++.+
T Consensus 81 ~tv~~~v~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~ 151 (530)
T COG0488 81 KTVLDYVIEGFG-----ELRELLAELEEAYAL---LADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPV 151 (530)
T ss_pred ccHHHHHHhhhH-----HHHHHHHHHHHHHHh---cccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCch
Confidence 999999976543 112222222221111 1111 111111111 12233445667788999999887 8888
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEE
Q 000506 335 GDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNII 414 (1458)
Q Consensus 335 g~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~ 414 (1458)
++ ||||||.||+||++|+.+|++|+|||||++||..+..++.+.|++. .+ +++.++|+....-+.|++|+
T Consensus 152 ~~-----LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~t~I~ 221 (530)
T COG0488 152 SS-----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVATHIL 221 (530)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHhhheE
Confidence 88 9999999999999999999999999999999999999999999864 23 66778899999999999999
Q ss_pred EEcCCeE-EEEcChhhHH
Q 000506 415 LLSEGQI-VYQGPREKVL 431 (1458)
Q Consensus 415 lL~~G~i-v~~G~~~~~~ 431 (1458)
-++.|++ .|.|.++...
T Consensus 222 ~ld~g~l~~y~Gny~~~~ 239 (530)
T COG0488 222 ELDRGKLTPYKGNYSSYL 239 (530)
T ss_pred EecCCceeEecCCHHHHH
Confidence 9999987 6788876654
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=468.92 Aligned_cols=462 Identities=21% Similarity=0.314 Sum_probs=360.5
Q ss_pred ccccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcccc----ceEEEecCC
Q 000506 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ----RTCAYISQN 252 (1458)
Q Consensus 177 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~ 252 (1458)
.+..+...+++|||++|++||+.+|+|.||||||||+++|.|.++|+ +|+|.++|+++.-..++ --||+|.||
T Consensus 11 tK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQH 87 (501)
T COG3845 11 TKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQH 87 (501)
T ss_pred EEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeec
Confidence 34455778999999999999999999999999999999999999999 99999999998755543 459999999
Q ss_pred CCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccc
Q 000506 253 DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADT 332 (1458)
Q Consensus 253 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 332 (1458)
..+++++||.||+..+..-... .+ +.++ +....++.+.+.+||+-..|.
T Consensus 88 F~Lv~~lTV~ENiiLg~e~~~~-~~------~~~~------------------------~~~~~i~~l~~~yGl~vdp~~ 136 (501)
T COG3845 88 FMLVPTLTVAENIILGLEPSKG-GL------IDRR------------------------QARARIKELSERYGLPVDPDA 136 (501)
T ss_pred cccccccchhhhhhhcCccccc-cc------cCHH------------------------HHHHHHHHHHHHhCCCCCccc
Confidence 9999999999999987542100 00 0000 012235668899999999999
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCE
Q 000506 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412 (1458)
Q Consensus 333 ~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 412 (1458)
+|++ ||=||||||.|-++|+.+|++|+|||||+-|-|....++++.|+++++. +.+|+.++|-..|+.+++||
T Consensus 137 ~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~--G~tIi~ITHKL~Ev~~iaDr 209 (501)
T COG3845 137 KVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAE--GKTIIFITHKLKEVMAIADR 209 (501)
T ss_pred eeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeccHHHHHHhhCe
Confidence 9999 9999999999999999999999999999999999999999999999873 45666788999999999999
Q ss_pred EEEEcCCeEEEEcCh-hhHHHHHHhcCCCCCCCCCHHHHHHHhcCchhhhhhhhccCCCCccCCHHHHHHhhhcchhhhh
Q 000506 413 IILLSEGQIVYQGPR-EKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQ 491 (1458)
Q Consensus 413 v~lL~~G~iv~~G~~-~~~~~~F~~~G~~~p~~~~~ad~l~ev~s~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~ 491 (1458)
+.||..|+++-.-++ .+ .+.++.++
T Consensus 210 vTVLR~Gkvvgt~~~~~~--------------------------------------------~t~~ela~---------- 235 (501)
T COG3845 210 VTVLRRGKVVGTVDPVAE--------------------------------------------TTEEELAE---------- 235 (501)
T ss_pred eEEEeCCeEEeeecCCCC--------------------------------------------CCHHHHHH----------
Confidence 999999998643321 00 00000000
Q ss_pred HHhhhcCCcCCcCCCccccccCCCCcchHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccc
Q 000506 492 LANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVAD 571 (1458)
Q Consensus 492 l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~ 571 (1458)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T COG3845 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccCcccChhhHHHHHHHHHhhHHHHHHHHHHHHHHHhcCcchhH
Q 000506 572 GAKFYGALFFSLINLMFNGLAELAFTVFRLPVFFKQRDHLFYPPWAYALPIFVLRIPLSILESAIWVCLTYYTIGFAPAA 651 (1458)
Q Consensus 572 ~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~i~~~~i~~~i~Y~~~g~~~~~ 651 (1458)
.|+|
T Consensus 236 -----------------------------------------------------------------------lMvG----- 239 (501)
T COG3845 236 -----------------------------------------------------------------------LMVG----- 239 (501)
T ss_pred -----------------------------------------------------------------------HhcC-----
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhheeccCCCchhHHHHHHHHcHHHHHHHHHHH
Q 000506 652 SRLFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFMIWGYYVSPMMYGQNAIVI 731 (1458)
Q Consensus 652 ~~ff~~~l~~~~~~~~~~~l~r~i~~~~~~~~va~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 731 (1458)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T COG3845 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCCCCCCCCCCCCCcccchhhhhhhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCceeecccc
Q 000506 732 NEFLDERWSKPVSDPKIHEPTVGKLLLKSRGFFTVNYWYWICIGALFGFTILFNILFIAAIQFLNPLGKAKPTVIEEDGD 811 (1458)
Q Consensus 732 nef~~~~~~~~~~~~~~~~~~~g~~~l~~~g~~~~~~~~w~~~g~l~g~~i~f~~l~~~~l~~~~~~~~~~~~~~~~~~~ 811 (1458)
..+. . .
T Consensus 240 -----------------------~~v~-----------------------------------------------~----~ 245 (501)
T COG3845 240 -----------------------REVV-----------------------------------------------L----R 245 (501)
T ss_pred -----------------------Cccc-----------------------------------------------c----c
Confidence 0000 0 0
Q ss_pred cccccCCCCCCCCCcccccccCCCCCCCCCCCCCCcccCCCCeEEEEeeeeeEeecchhhhhcccccccceecccceeEE
Q 000506 812 KKKKASGQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVF 891 (1458)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i 891 (1458)
..+ .+ ...| +..++++|++..-.. ....+++|||+|
T Consensus 246 ~~~---------------------~~-----~~pg------~~vL~V~~L~v~~~~------------~~~~v~~vs~~V 281 (501)
T COG3845 246 VVK---------------------PP-----STPG------EVVLEVEDLSVKDRR------------GVTAVKDVSFEV 281 (501)
T ss_pred ccc---------------------CC-----CCCC------CeEEEEeeeEeecCC------------CCceeeeeeeEE
Confidence 000 00 0001 235778887754321 245799999999
Q ss_pred eCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC----Ccc-cccceEEEEccCCC---CCCCCCHHHHHH
Q 000506 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK----NQA-TFARVSGYCEQNDI---HSPHVTVYESLL 963 (1458)
Q Consensus 892 ~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~----~~~-~~~~~~gyv~Q~~~---~~~~lTV~e~l~ 963 (1458)
++||++||.|..|-|-+.|+.+|+|..++ .+|+|.++|++. +.. ..+..+||||.|.. +.+.+|+.||+.
T Consensus 282 r~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~v 359 (501)
T COG3845 282 RAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLV 359 (501)
T ss_pred ecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhh
Confidence 99999999999999999999999998753 459999999986 222 23356899999874 568999999998
Q ss_pred HHHhhhc----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000506 964 FSAWLRL----SSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039 (1458)
Q Consensus 964 f~~~lr~----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD 1039 (1458)
+...-+. ..-.+..+..+.+.++++.++....... ...+.||||++||+-+||+|..+|++|+..+||.|||
T Consensus 360 L~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLD 435 (501)
T COG3845 360 LGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD----APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLD 435 (501)
T ss_pred hhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----cchhhcCCcceehhhhhhhhccCCCEEEEcCCCcccc
Confidence 7654221 1124556777889999999998733211 1245899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCCc
Q 000506 1040 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGR 1095 (1458)
Q Consensus 1040 ~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~~ 1095 (1458)
..+...|.+.|.+.++.|++|++++-+.+ |+++.+||+.+|.+ |+++...+..+
T Consensus 436 vgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~~ 489 (501)
T COG3845 436 VGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPEE 489 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceeccccccc
Confidence 99999999999999999999999999987 89999999999985 78888777653
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=382.22 Aligned_cols=214 Identities=25% Similarity=0.404 Sum_probs=191.1
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|++.++ +..++|+|||++|++||+++|+|||||||||||++|.++.. +.+|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 6778887766 35789999999999999999999999999999999999987 58999999997653
Q ss_pred ----cccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000506 936 ----QATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 936 ----~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1011 (1458)
....|+.+|+|+|+.++||++||.||+.++... -...++++.++.+.++|+.+||.+.+|.+. .+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~--v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK--VKKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHH--HcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcH
Confidence 235678999999999999999999999987532 234567778888999999999999999885 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
|||||+|||||+.+|+++++|||||+|||+...++.+.+++++++|.|.||+||++.. ..+.+|||+.|++ |+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999874 6788999999985 7888888
Q ss_pred CC
Q 000506 1092 PL 1093 (1458)
Q Consensus 1092 ~~ 1093 (1458)
++
T Consensus 219 ~p 220 (240)
T COG1126 219 PP 220 (240)
T ss_pred CH
Confidence 75
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=376.16 Aligned_cols=227 Identities=26% Similarity=0.403 Sum_probs=192.3
Q ss_pred cccccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc----cccceEEEecC
Q 000506 176 LPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF----VPQRTCAYISQ 251 (1458)
Q Consensus 176 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~----~~~~~~~yv~Q 251 (1458)
+.+..+...+|+|||++|++||+++|+|||||||||||++|.|+..++ +|+|.++|+++... ..|+.+|+|+|
T Consensus 8 l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ 84 (240)
T COG1126 8 LSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQ 84 (240)
T ss_pred eeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecc
Confidence 345566788999999999999999999999999999999999999998 99999999866422 24678999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccc
Q 000506 252 NDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICAD 331 (1458)
Q Consensus 252 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 331 (1458)
+..+||++||.||+..+...- ...++. +.+......|+.+||.+.+|
T Consensus 85 ~fnLFPHlTvleNv~lap~~v---------~~~~k~------------------------eA~~~A~~lL~~VGL~~ka~ 131 (240)
T COG1126 85 QFNLFPHLTVLENVTLAPVKV---------KKLSKA------------------------EAREKALELLEKVGLADKAD 131 (240)
T ss_pred cccccccchHHHHHHhhhHHH---------cCCCHH------------------------HHHHHHHHHHHHcCchhhhh
Confidence 999999999999999864321 011111 11223455899999999999
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
..+.. |||||||||+|||||+.+|+++++|||||+|||....++.+.++++++. +.+.+.++|.+..+.+.+|
T Consensus 132 ~yP~q-----LSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e--GmTMivVTHEM~FAr~Vad 204 (240)
T COG1126 132 AYPAQ-----LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMIIVTHEMGFAREVAD 204 (240)
T ss_pred hCccc-----cCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc--CCeEEEEechhHHHHHhhh
Confidence 98877 9999999999999999999999999999999999999999999999974 4566667899999999999
Q ss_pred EEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHH
Q 000506 412 NIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQE 453 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~e 453 (1458)
||+.|++|+++.+|+++++ |..|.+....+|+..
T Consensus 205 rviFmd~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 205 RVIFMDQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred eEEEeeCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 9999999999999999887 456766667777654
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=392.80 Aligned_cols=202 Identities=19% Similarity=0.221 Sum_probs=157.8
Q ss_pred eEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCee
Q 000506 854 LSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP 933 (1458)
Q Consensus 854 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1458)
..+.+.|+++.++. +..++++++|-+.+++.+|++|||||||||||+++.|... +..|.|.-.-+.
T Consensus 388 pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H~ 453 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSHN 453 (614)
T ss_pred CeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccccc
Confidence 35788999887752 1258999999999999999999999999999999999887 467877543322
Q ss_pred CCcccccceEEEEccCC--CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000506 934 KNQATFARVSGYCEQND--IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 934 ~~~~~~~~~~gyv~Q~~--~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1011 (1458)
.+++..|+- .+--..++-|+++=.. ..+.+.+.+..++..+||....+... .++||+|
T Consensus 454 --------~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p----~~~LS~G 513 (614)
T KOG0927|consen 454 --------KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVP----MSQLSDG 513 (614)
T ss_pred --------cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccc----hhhcccc
Confidence 233444432 2333456666554211 11345567889999999995444331 4589999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
||+||..|+.++..|.||+|||||+|||..+...+-+.|.++ ..+||.++||.. -|-+..+++.+..+++...+.|
T Consensus 514 qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 514 QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCc
Confidence 999999999999999999999999999999999999999876 458999999976 4778899999999988889998
Q ss_pred CC
Q 000506 1092 PL 1093 (1458)
Q Consensus 1092 ~~ 1093 (1458)
..
T Consensus 590 ~i 591 (614)
T KOG0927|consen 590 DI 591 (614)
T ss_pred cH
Confidence 75
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=366.43 Aligned_cols=231 Identities=26% Similarity=0.392 Sum_probs=202.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.+++++++.++ +.+.+|+|||++|++||+++||||||+||||||+.|.|+.+ +.+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcch
Confidence 57888888765 45789999999999999999999999999999999999988 4899999999986
Q ss_pred Cc------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCC
Q 000506 935 NQ------ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL-TNAMVGLPGVDG 1007 (1458)
Q Consensus 935 ~~------~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~ 1007 (1458)
.+ ...++++|+++|+-.+|..+||+||+.|. +|.....+++..++.+..-|+.+||... .+.. +++
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp--lre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP--LREHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhhee--hHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 43 23567899999999999999999999985 4455567788888889999999999887 5655 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1008 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
||||+|||+++|||++.+|+|||+||||+||||.++..+-++|+++.++ |.|++++|||.+ +++..+|++++|.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999877 999999999987 69999999999985 79
Q ss_pred EEEeCCCCc----chHHHHHHHHhCCC
Q 000506 1087 VIYAGPLGR----QSQKLVEYFEAVPG 1109 (1458)
Q Consensus 1087 ~~~~G~~~~----~~~~~~~~f~~~~g 1109 (1458)
++..|+.++ +..-+.+||.+..+
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~~~ 250 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGIRD 250 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCCCC
Confidence 999999753 22457788887643
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=379.53 Aligned_cols=219 Identities=24% Similarity=0.342 Sum_probs=193.5
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
+++++|+..+... ..+...+|+|||++|++||++||+|.||||||||++++.++.. +.+|+|.++|.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 5678887665321 1123579999999999999999999999999999999999987 58999999997753
Q ss_pred c------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000506 936 Q------ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 936 ~------~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1009 (1458)
. ...|+.+|+++|+..++...||.||+.|...+.. .++++++++|.++++.+||.+.++.+. .+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYP-----AQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCc-----hhcC
Confidence 2 3467889999999999999999999999887764 568899999999999999999998874 4899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1088 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~ 1088 (1458)
|||||||+|||||+.+|+||++|||||+|||.+...|.++|+++.++ |.||+++||++. -+.+.|||+.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 37789999999985 8999
Q ss_pred EeCCCC
Q 000506 1089 YAGPLG 1094 (1458)
Q Consensus 1089 ~~G~~~ 1094 (1458)
..|+..
T Consensus 222 E~G~v~ 227 (339)
T COG1135 222 EEGTVS 227 (339)
T ss_pred EeccHH
Confidence 999863
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=396.55 Aligned_cols=224 Identities=31% Similarity=0.455 Sum_probs=195.0
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.+.++|++..+.. ++.+|+||||+|++||++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~k~~~~------------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~ 69 (293)
T COG1131 4 VIEVRNLTKKYGG------------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDV 69 (293)
T ss_pred eeeecceEEEeCC------------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeC
Confidence 3566777766530 3679999999999999999999999999999999999987 4899999999886
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000506 935 NQ--ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQ 1012 (1458)
Q Consensus 935 ~~--~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1012 (1458)
.. ...++.+||++|++.+++.+||+|+|.|.+.++.+.. +..+++++++++.++|.+.+++.+ ++||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHH
Confidence 54 4567889999999999999999999999999986543 445678999999999998655554 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1013 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
|||++||+||+++|++|||||||+|||+.++..+++.|++++++| +||+++||+++ ++.+.||+|++|++ |++++.|
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g 219 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEG 219 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeC
Confidence 999999999999999999999999999999999999999999887 89999999987 78888999999985 7999999
Q ss_pred CCCcchHHHHHHHHh
Q 000506 1092 PLGRQSQKLVEYFEA 1106 (1458)
Q Consensus 1092 ~~~~~~~~~~~~f~~ 1106 (1458)
+. .++...+..
T Consensus 220 ~~----~~l~~~~~~ 230 (293)
T COG1131 220 TP----EELKEKFGG 230 (293)
T ss_pred CH----HHHHHhhcc
Confidence 75 345555443
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=375.89 Aligned_cols=218 Identities=28% Similarity=0.431 Sum_probs=187.9
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++. + ++|+|||+++++|++++|+||||||||||+|+|.|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~~------------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYGN------------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEECC------------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 5889999998841 2 59999999999999999999999999999999999877 4799999999987
Q ss_pred CcccccceEEEEccCCC--CCCCCCHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000506 935 NQATFARVSGYCEQNDI--HSPHVTVYESLLFSAWLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~--~~~~lTV~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1011 (1458)
.+..-+..+|||||... ....+||+|-+..+..-+.. -....++.++.++++|+.+|+.+.+|+.+| .||||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGG 143 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGG 143 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcH
Confidence 65444578999999652 23458999999887443321 111223446789999999999999999987 69999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
|+|||.|||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||++ .+.+.||++++|+ +++++.|
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G 220 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASG 220 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEecc
Confidence 999999999999999999999999999999999999999999988999999999998 5889999999997 4799999
Q ss_pred CCCc
Q 000506 1092 PLGR 1095 (1458)
Q Consensus 1092 ~~~~ 1095 (1458)
++.+
T Consensus 221 ~~~~ 224 (254)
T COG1121 221 PPEE 224 (254)
T ss_pred Chhh
Confidence 9864
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=379.09 Aligned_cols=228 Identities=29% Similarity=0.435 Sum_probs=195.5
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++.+|+++.|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 467889998874 4679999999999999999999999999999999999887 4789999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSS-DIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
.. ..+++.+|||||.......+||+|.+.++..-.... ....++.++.++++|+.+++.+.+++.+. .|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccCh
Confidence 43 457789999999998888999999999875432211 11234445579999999999999998764 7999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
|||||+.|||||+++|+||+||||||.||...+.+++++++++++ +|+|||+++||++. ...+||++++|++ |+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEe
Confidence 999999999999999999999999999999999999999999985 49999999999984 7789999999985 79999
Q ss_pred eCCCCc--chHHHHHHH
Q 000506 1090 AGPLGR--QSQKLVEYF 1104 (1458)
Q Consensus 1090 ~G~~~~--~~~~~~~~f 1104 (1458)
.|++.+ ..+.+.+.|
T Consensus 220 ~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 220 QGTPEEVLTEENLREVY 236 (258)
T ss_pred ecCcchhcCHHHHHHHh
Confidence 998753 334555655
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=413.64 Aligned_cols=216 Identities=22% Similarity=0.355 Sum_probs=188.5
Q ss_pred eEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCee
Q 000506 854 LSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP 933 (1458)
Q Consensus 854 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1458)
..++++|+++.++. +++.+|+|+|+.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|++
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 46889999887731 13569999999999999999999999999999999999987 479999999998
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000506 934 KNQ--ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 934 ~~~--~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1011 (1458)
+.. ...++.+|||+|++.+++.+||+|++.|.++++. .+.++.++.++++++.+||.+..|+.++ .||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHH
Confidence 643 2346779999999999999999999999876653 2334455678999999999988887754 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
|||||+||+||+.+|+||+|||||+|||+.+++.++++|++++ +|+|||+|||+++ ++...+||+++|++ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 6999999999986 57778999999985 7899988
Q ss_pred CC
Q 000506 1092 PL 1093 (1458)
Q Consensus 1092 ~~ 1093 (1458)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 75
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=362.45 Aligned_cols=213 Identities=28% Similarity=0.408 Sum_probs=191.0
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++|+||+..+. .+.+++|+|++|++||+++++|||||||||+|++|.++.. +++|+|++||.++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 46788876653 4679999999999999999999999999999999999987 58999999999865
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCH
Q 000506 936 Q---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP--LTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 936 ~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSg 1010 (1458)
. ..+||.+|||-|.-.+||++||.||+.+-..+. ..++++.+++++|+|+.+||.+ +++++ +++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 467899999999999999999999998876654 4577888999999999999985 56665 568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
||+|||.+||||+++|+||+||||+++|||-++..+++.++++.++ |+|||++|||.. |.+.+.||+.+|++ |+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~-G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA-GEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC-CeEEE
Confidence 9999999999999999999999999999999999999999999766 999999999987 78999999999985 78887
Q ss_pred eCCC
Q 000506 1090 AGPL 1093 (1458)
Q Consensus 1090 ~G~~ 1093 (1458)
.+++
T Consensus 217 ~~~P 220 (309)
T COG1125 217 YDTP 220 (309)
T ss_pred eCCH
Confidence 7775
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=365.75 Aligned_cols=204 Identities=25% Similarity=0.382 Sum_probs=182.3
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.+.++++++++. ...+|+|||++|.+||+++|+||||||||||||+|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 467788887764 2579999999999999999999999999999999999987 5899999999987
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000506 935 NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014 (1458)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1014 (1458)
. .....+|||+|++.++|-.||+||+.|+...+. .+.+++.+++++.|+.+||.+..|.+. .+|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHH
Confidence 3 335678999999999999999999999887653 455667779999999999999999874 589999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1015 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
||+|||||+.+|+||+||||+++||+.|+..+++.|.++.+ .++|||++|||.+ |...+.|||++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999865 4899999999987 677899999999864
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=388.13 Aligned_cols=223 Identities=31% Similarity=0.440 Sum_probs=196.3
Q ss_pred ccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcccc-ceEEEecCCCCCCC
Q 000506 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ-RTCAYISQNDLHFG 257 (1458)
Q Consensus 179 ~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~-~~~~yv~Q~d~~~~ 257 (1458)
..+...+|+|+|++|++||+++|+|||||||||||++|||+.+|+ +|+|.++|+++++..++ |.+|+|+|+..+||
T Consensus 12 ~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyP 88 (338)
T COG3839 12 SFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYP 88 (338)
T ss_pred EcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccC
Confidence 333333999999999999999999999999999999999999998 99999999999998774 78999999999999
Q ss_pred CCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCc
Q 000506 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQ 337 (1458)
Q Consensus 258 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 337 (1458)
+|||+||+.|+.+.++... .+ .+.+++.+.+.|+|++..|+++..
T Consensus 89 hmtV~~Niaf~Lk~~~~~k--------------------~e--------------i~~rV~eva~~L~l~~lL~r~P~~- 133 (338)
T COG3839 89 HMTVYENIAFGLKLRGVPK--------------------AE--------------IDKRVKEVAKLLGLEHLLNRKPLQ- 133 (338)
T ss_pred CCcHHHHhhhhhhhCCCch--------------------HH--------------HHHHHHHHHHHcCChhHHhcCccc-
Confidence 9999999999998765421 11 122456789999999999998877
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEc
Q 000506 338 MRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417 (1458)
Q Consensus 338 ~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~ 417 (1458)
|||||||||++||||+.+|++++||||+|.||+..+.++...++++.+..+ ++++.++|+..|+..++|||++|+
T Consensus 134 ----LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~-~T~IYVTHDq~EAmtladri~Vm~ 208 (338)
T COG3839 134 ----LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLG-TTTIYVTHDQVEAMTLADRIVVMN 208 (338)
T ss_pred ----CChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcC-CcEEEEcCCHHHHHhhCCEEEEEe
Confidence 999999999999999999999999999999999999999999999877655 566668899999999999999999
Q ss_pred CCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHH
Q 000506 418 EGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQ 452 (1458)
Q Consensus 418 ~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ 452 (1458)
+|++...|++.++ |..|.+.-+|.|+-
T Consensus 209 ~G~i~Q~g~p~el--------y~~P~n~fVA~FiG 235 (338)
T COG3839 209 DGRIQQVGTPLEL--------YERPANLFVAGFIG 235 (338)
T ss_pred CCeeeecCChHHH--------hhCccchhhhhhcC
Confidence 9999999999998 45677766777653
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=364.03 Aligned_cols=208 Identities=28% Similarity=0.458 Sum_probs=176.6
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|++..+... .....+|++||++|++||++||||||||||||||++|.|...+ ++|.|.++|.+...
T Consensus 3 ~~~~v~k~y~~~---------~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~ 71 (226)
T COG1136 3 ELKNVSKIYGLG---------GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTK 71 (226)
T ss_pred EEeeeEEEeccC---------CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCc
Confidence 466776655422 1225799999999999999999999999999999999999874 89999999987542
Q ss_pred ------ccc-cceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccc-ccccCCCCCCC
Q 000506 937 ------ATF-ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTN-AMVGLPGVDGL 1008 (1458)
Q Consensus 937 ------~~~-~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~vg~~~~~~L 1008 (1458)
..+ ++.+|||+|+..+.|.+||+||+.+...+... ...++++.++++++.+||.+..+ .. +.+|
T Consensus 72 l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eL 143 (226)
T COG1136 72 LSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PSEL 143 (226)
T ss_pred CCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----chhc
Confidence 123 35799999999999999999999987655432 22256677899999999997766 54 3589
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1009 SgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
||||||||+|||||+.+|+||+.||||.+||+.++..|++++++++++ |+|||++|||| ++...|||++.|.+|+
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCe
Confidence 999999999999999999999999999999999999999999999866 99999999997 5888999999998743
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=359.40 Aligned_cols=220 Identities=27% Similarity=0.378 Sum_probs=190.0
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|++..++ +++++|+|||+.|++||++||+|+|||||||||++|.|... +.+|+|.+||..+
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 578899887774 35789999999999999999999999999999999999766 5799999999764
Q ss_pred Cc------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhc-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000506 935 NQ------ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRL-----SSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLP 1003 (1458)
Q Consensus 935 ~~------~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 1003 (1458)
.. ..+++.+||++|+..+.+.++|.+|++.+..-+. --....++.+..+-+.|+.+|+.+.+-++.+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc--
Confidence 32 3467889999999999999999999987642221 1123445566778899999999998877754
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1004 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
.|||||+|||+|||||+++|+||+.|||+++|||.++..||+.|++++++ |.|||++.||... ..++|||++-|+
T Consensus 147 ---~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 147 ---TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 79999999999999999999999999999999999999999999999754 9999999999874 678999999998
Q ss_pred cCcEEEEeCCCCc
Q 000506 1083 RGGQVIYAGPLGR 1095 (1458)
Q Consensus 1083 ~gG~~~~~G~~~~ 1095 (1458)
+ |+++|.||..+
T Consensus 223 ~-G~ivfDg~~~e 234 (258)
T COG3638 223 A-GRIVFDGPASE 234 (258)
T ss_pred C-CcEEEeCChhh
Confidence 5 89999999864
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=359.42 Aligned_cols=213 Identities=29% Similarity=0.412 Sum_probs=188.2
Q ss_pred ccccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc---ccceEEEecCCC
Q 000506 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV---PQRTCAYISQND 253 (1458)
Q Consensus 177 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d 253 (1458)
+++..++++++|+|++|++||+++++|||||||||+||+|.+++.|+ +|+|.+||+++.+.. .|+.+|||-|.-
T Consensus 8 sk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqi 84 (309)
T COG1125 8 SKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQI 84 (309)
T ss_pred ehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhc
Confidence 44556778999999999999999999999999999999999999998 999999999988754 378899999999
Q ss_pred CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc--ccc
Q 000506 254 LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI--CAD 331 (1458)
Q Consensus 254 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~--~~d 331 (1458)
.+||++||.||+.+...+++.... +.+.+++++|+.+||+. .++
T Consensus 85 gLFPh~Tv~eNIa~VP~L~~w~k~----------------------------------~i~~r~~ELl~lvgL~p~~~~~ 130 (309)
T COG1125 85 GLFPHLTVAENIATVPKLLGWDKE----------------------------------RIKKRADELLDLVGLDPSEYAD 130 (309)
T ss_pred ccCCCccHHHHHHhhhhhcCCCHH----------------------------------HHHHHHHHHHHHhCCCHHHHhh
Confidence 999999999999987766554211 11234677999999974 677
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
..+.+ |||||+|||.+||||+.+|++++||||+++|||.++.++.+.++++.++.++ +|+.++|+.+|+..++|
T Consensus 131 RyP~e-----LSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~k-TivfVTHDidEA~kLad 204 (309)
T COG1125 131 RYPHE-----LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGK-TIVFVTHDIDEALKLAD 204 (309)
T ss_pred cCchh-----cCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCC-EEEEEecCHHHHHhhhc
Confidence 77665 9999999999999999999999999999999999999999999999887765 55668899999999999
Q ss_pred EEEEEcCCeEEEEcChhhHHH
Q 000506 412 NIILLSEGQIVYQGPREKVLE 432 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~~ 432 (1458)
||++|++|+++..+++++++.
T Consensus 205 ri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 205 RIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred eEEEecCCeEEEeCCHHHHHh
Confidence 999999999999999999864
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=390.33 Aligned_cols=228 Identities=31% Similarity=0.431 Sum_probs=201.1
Q ss_pred ccccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-cceEEEecCCCCC
Q 000506 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLH 255 (1458)
Q Consensus 177 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~ 255 (1458)
.+..+...+++|+|+.|++||+++|+|||||||||||++|||+..|+ +|+|.++|++++...+ +|.+++|+|+..+
T Consensus 12 ~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YAL 88 (352)
T COG3842 12 SKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYAL 88 (352)
T ss_pred eeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCccc
Confidence 34455778999999999999999999999999999999999999998 9999999999998776 5789999999999
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 335 (1458)
||+|||+||++|+.+.+.... +.+ .+.+++.+++.++|++.++.++.
T Consensus 89 FPHltV~~NVafGLk~~~~~~-------------------~~~--------------i~~rv~e~L~lV~L~~~~~R~p~ 135 (352)
T COG3842 89 FPHMTVEENVAFGLKVRKKLK-------------------KAE--------------IKARVEEALELVGLEGFADRKPH 135 (352)
T ss_pred CCCCcHHHHhhhhhhhcCCCC-------------------HHH--------------HHHHHHHHHHHcCchhhhhhChh
Confidence 999999999999987432111 011 12246778999999999998887
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEE
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~l 415 (1458)
. |||||||||+|||||+.+|++||||||.|+||..-+.++..-|+++.+..+ .+.+.++|+.+|+..++|||++
T Consensus 136 q-----LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~g-iT~i~VTHDqeEAl~msDrI~V 209 (352)
T COG3842 136 Q-----LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELG-ITFVYVTHDQEEALAMSDRIAV 209 (352)
T ss_pred h-----hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcC-CeEEEEECCHHHHhhhccceEE
Confidence 7 999999999999999999999999999999999999999999999998765 5566688999999999999999
Q ss_pred EcCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHh
Q 000506 416 LSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEV 454 (1458)
Q Consensus 416 L~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev 454 (1458)
|++|+|...|+++++ |..|...-+|+|+-+.
T Consensus 210 m~~G~I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 210 MNDGRIEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred ccCCceeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 999999999999998 5678888888887753
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=369.64 Aligned_cols=225 Identities=28% Similarity=0.358 Sum_probs=195.9
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc------ccceEEEecCCCC
Q 000506 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV------PQRTCAYISQNDL 254 (1458)
Q Consensus 181 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~ 254 (1458)
+...+|+|||+.|++||+++|+|+||||||||++++.++-.|+ +|+|.++|.++.... .|+.||+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3467999999999999999999999999999999999999998 999999999887654 2578999999999
Q ss_pred CCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccc
Q 000506 255 HFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMV 334 (1458)
Q Consensus 255 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 334 (1458)
++...||.||++|..+..+... .+ .+.++..+++.+||++.+|..+
T Consensus 94 LLssrTV~~NvA~PLeiag~~k----------~e------------------------i~~RV~elLelVgL~dk~~~yP 139 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVPK----------AE------------------------IKQRVAELLELVGLSDKADRYP 139 (339)
T ss_pred ccccchHHhhhhhhHhhcCCCH----------HH------------------------HHHHHHHHHHHcCChhhhccCc
Confidence 9999999999999888765321 11 1234566899999999999888
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEE
Q 000506 335 GDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNII 414 (1458)
Q Consensus 335 g~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~ 414 (1458)
.+ |||||||||+|||||+.+|+||++|||||+|||.|+..|.+.|+++.++.+ .+|+.++|-++-+-+.||||.
T Consensus 140 ~q-----LSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lg-lTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 140 AQ-----LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELG-LTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred hh-----cCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcC-CEEEEEechHHHHHHHhhhhe
Confidence 87 999999999999999999999999999999999999999999999998766 555667788999999999999
Q ss_pred EEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHhcC
Q 000506 415 LLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTS 456 (1458)
Q Consensus 415 lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev~s 456 (1458)
+|++|+++++|+..++ |..|.+.-...|+.+...
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~~ 247 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETLE 247 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhcc
Confidence 9999999999999988 455666666666666543
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=350.24 Aligned_cols=202 Identities=29% Similarity=0.423 Sum_probs=186.1
Q ss_pred ceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC--cccccceEEEEccCCCCCCCCCH
Q 000506 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN--QATFARVSGYCEQNDIHSPHVTV 958 (1458)
Q Consensus 881 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~--~~~~~~~~gyv~Q~~~~~~~lTV 958 (1458)
.++++||||+++.||++||+|+|||||||+|++|++... +++|.|++||.+.. +...++.+|.++.+..++..+|+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 358999999999999999999999999999999999987 58999999998753 34578999999988889999999
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000506 959 YESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1458)
Q Consensus 959 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgL 1038 (1458)
+|||.|.+.+. ++..++.+++++++.+.++|.++.|+.+| ++|.|+||||+|||||+++|++++||||||||
T Consensus 93 rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 99999998876 34567778899999999999999999987 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCC
Q 000506 1039 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~ 1094 (1458)
|..+...+.+.++++.++|++||+++|.++ |+..+||++++|++ |++++.|...
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHH
Confidence 999999999999999989999999999986 78889999999996 7999999874
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=367.81 Aligned_cols=206 Identities=31% Similarity=0.478 Sum_probs=186.7
Q ss_pred ccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCe---eCCc-ccccceEEEEccCCCCCC
Q 000506 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGY---PKNQ-ATFARVSGYCEQNDIHSP 954 (1458)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~Q~~~~~~ 954 (1458)
+...+++|||+.|+.||++||+|||||||||||++|||+.+ ++.|.|.+||. +.++ ..-.|.+|||+|+..+|+
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 34678999999999999999999999999999999999987 58999999999 5444 233578999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000506 955 HVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP 1034 (1458)
Q Consensus 955 ~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEP 1034 (1458)
++||.+|+.|+.+++ ....++.+++.+++++|+.+.|++..+.+ +.+|||||||||++||||+..|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998877 33456677888999999999999999887 458999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCC
Q 000506 1035 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1035 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~ 1094 (1458)
+++||+.-+..+.+.|+++.+. |.|+|++|||+. +..+.+|||++|++ |+++..||..
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 9999999999999999999877 999999999986 89999999999986 7999999863
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=366.97 Aligned_cols=225 Identities=31% Similarity=0.475 Sum_probs=190.1
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCe---ecCCccc-cceEEEecCCCCC
Q 000506 180 KRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGH---EFKEFVP-QRTCAYISQNDLH 255 (1458)
Q Consensus 180 ~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~---~~~~~~~-~~~~~yv~Q~d~~ 255 (1458)
-+...+++|||+.|+.||+++|+|||||||||||++|||+..|+ +|.|.+||+ +.++... .|.||||+|+..+
T Consensus 12 ~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YAL 88 (345)
T COG1118 12 FGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYAL 88 (345)
T ss_pred cccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhh
Confidence 35567899999999999999999999999999999999999998 999999999 5555333 4789999999999
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 335 (1458)
|++|||.+||+|+.+++.. + |++ .+.+..++++|+.+.|++.++..+-
T Consensus 89 F~HmtVa~NIAFGl~~~~~--~-----------------p~~-------------~~~r~rv~elL~lvqL~~la~ryP~ 136 (345)
T COG1118 89 FPHMTVADNIAFGLKVRKE--R-----------------PSE-------------AEIRARVEELLRLVQLEGLADRYPA 136 (345)
T ss_pred cccchHHhhhhhccccccc--C-----------------CCh-------------hhHHHHHHHHHHHhcccchhhcCch
Confidence 9999999999999876511 0 100 0112245668999999999988877
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEE
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~l 415 (1458)
+ |||||||||++||||+..|++|+||||+++||...+.++-+.|+++.+..+ ++.+.++|+.+|+++++|||++
T Consensus 137 Q-----LSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~-~ttvfVTHD~eea~~ladrvvv 210 (345)
T COG1118 137 Q-----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLG-VTTVFVTHDQEEALELADRVVV 210 (345)
T ss_pred h-----cChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhC-ceEEEEeCCHHHHHhhcceEEE
Confidence 6 999999999999999999999999999999999999999999999987655 4555678999999999999999
Q ss_pred EcCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHH
Q 000506 416 LSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQE 453 (1458)
Q Consensus 416 L~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~e 453 (1458)
|++|+|...||++++. ..|...-+..|+-+
T Consensus 211 l~~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~ 240 (345)
T COG1118 211 LNQGRIEQVGPPDEVY--------DHPASRFVARFLGE 240 (345)
T ss_pred ecCCeeeeeCCHHHHh--------cCCCccceeccccc
Confidence 9999999999999983 44555555555443
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=383.72 Aligned_cols=218 Identities=32% Similarity=0.462 Sum_probs=188.7
Q ss_pred cccccc-cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc--cccceEEEecCC
Q 000506 176 LPSKKR-KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF--VPQRTCAYISQN 252 (1458)
Q Consensus 176 ~~~~~~-~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~ 252 (1458)
+.++.+ .+.+|+|||++|++||+++|+||||||||||||+|+|++.|+ +|+|.++|++.... ..++.+||++|+
T Consensus 10 l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~ 86 (293)
T COG1131 10 LTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQE 86 (293)
T ss_pred eEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccC
Confidence 345556 578999999999999999999999999999999999999998 99999999987653 346789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccc
Q 000506 253 DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADT 332 (1458)
Q Consensus 253 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 332 (1458)
+.+++.+||+|+|.|.+++++..... ....++.+++.+||++.+++
T Consensus 87 ~~~~~~lT~~e~l~~~~~l~~~~~~~----------------------------------~~~~~~~~l~~~~L~~~~~~ 132 (293)
T COG1131 87 PSLYPELTVRENLEFFARLYGLSKEE----------------------------------AEERIEELLELFGLEDKANK 132 (293)
T ss_pred CCCCccccHHHHHHHHHHHhCCChhH----------------------------------HHHHHHHHHHHcCCchhhCc
Confidence 99999999999999999887643100 11235678999999986666
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCE
Q 000506 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412 (1458)
Q Consensus 333 ~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 412 (1458)
++++ ||+||||||+||.||+++|+++||||||+|||+.++.++.+.|+++++. ++++|+..+|..+++..+||+
T Consensus 133 ~~~~-----lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~ 206 (293)
T COG1131 133 KVRT-----LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDR 206 (293)
T ss_pred chhh-----cCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCE
Confidence 6665 9999999999999999999999999999999999999999999999975 335666677888999999999
Q ss_pred EEEEcCCeEEEEcChhhHHHHHHh
Q 000506 413 IILLSEGQIVYQGPREKVLEFFEY 436 (1458)
Q Consensus 413 v~lL~~G~iv~~G~~~~~~~~F~~ 436 (1458)
|++|++|++++.|+.+++...+..
T Consensus 207 v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 207 VIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCEEEEeCCHHHHHHhhcc
Confidence 999999999999999998765543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=353.47 Aligned_cols=214 Identities=25% Similarity=0.391 Sum_probs=183.3
Q ss_pred ccccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc------ccceEEEec
Q 000506 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV------PQRTCAYIS 250 (1458)
Q Consensus 177 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~ 250 (1458)
.++.+.+.|++|||+.|++||+++|+|||||||||||++|.|+++|+ +|+|.+.|+++.... .++++|+++
T Consensus 15 ~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlF 91 (263)
T COG1127 15 TKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLF 91 (263)
T ss_pred eeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEe
Confidence 34556778999999999999999999999999999999999999998 999999999987654 246799999
Q ss_pred CCCCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccc-
Q 000506 251 QNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDIC- 329 (1458)
Q Consensus 251 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~- 329 (1458)
|+-.+|..+||+||+.|-.+-.. .+ |+..++. .+..-|+..||...
T Consensus 92 Q~gALFssltV~eNVafplre~~---------~l----------p~~~i~~--------------lv~~KL~~VGL~~~~ 138 (263)
T COG1127 92 QQGALFSSLTVFENVAFPLREHT---------KL----------PESLIRE--------------LVLMKLELVGLRGAA 138 (263)
T ss_pred eccccccccchhHhhheehHhhc---------cC----------CHHHHHH--------------HHHHHHHhcCCChhh
Confidence 99999999999999999655321 11 1111111 22334788999876
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhc
Q 000506 330 ADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDL 409 (1458)
Q Consensus 330 ~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~ 409 (1458)
+|.++.+ ||||++||++||||++.+|+++|+||||+||||.++..+.++++++.+..+. ++++++|+.++++..
T Consensus 139 ~~~~PsE-----LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~-T~i~VTHDl~s~~~i 212 (263)
T COG1127 139 ADLYPSE-----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL-TVIMVTHDLDSLLTI 212 (263)
T ss_pred hhhCchh-----hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCC-EEEEEECChHHHHhh
Confidence 7777766 9999999999999999999999999999999999999999999999987664 555678899999999
Q ss_pred cCEEEEEcCCeEEEEcChhhHHH
Q 000506 410 FDNIILLSEGQIVYQGPREKVLE 432 (1458)
Q Consensus 410 ~D~v~lL~~G~iv~~G~~~~~~~ 432 (1458)
+|+|++|.+|+|+..|+++++.+
T Consensus 213 ~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 213 ADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred hceEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999999864
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=368.99 Aligned_cols=213 Identities=31% Similarity=0.454 Sum_probs=182.4
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCCCCCC
Q 000506 180 KRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHF 256 (1458)
Q Consensus 180 ~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~ 256 (1458)
.++++||+|+|+++++||+++|+||||||||||||+|+|.++|. +|+|.++|+++.+... .+.+|||||.....
T Consensus 12 y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~ 88 (258)
T COG1120 12 YGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAP 88 (258)
T ss_pred ECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCC
Confidence 34567999999999999999999999999999999999999998 9999999999887654 37899999998878
Q ss_pred CCCCHHHHHHHhhhhc-cCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccccc
Q 000506 257 GEMTVRETMDFSGRCL-GVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335 (1458)
Q Consensus 257 ~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 335 (1458)
..+||+|-+.++..-. +. .. . + .+++...++..|+.+|+.+.++..+.
T Consensus 89 ~~~tV~d~V~~GR~p~~~~---~~---~-----------~--------------~~~D~~~v~~aL~~~~~~~la~r~~~ 137 (258)
T COG1120 89 FGLTVYELVLLGRYPHLGL---FG---R-----------P--------------SKEDEEIVEEALELLGLEHLADRPVD 137 (258)
T ss_pred CCcEEeehHhhcCCccccc---cc---C-----------C--------------CHhHHHHHHHHHHHhCcHHHhcCccc
Confidence 8899999998863211 10 00 0 0 01112246678999999999999998
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEE
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~l 415 (1458)
+ |||||||||.||+||+.+|++|+||||||.||...+.++++.+++++++.+ .++++++|+...+.++||++++
T Consensus 138 ~-----LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~-~tvv~vlHDlN~A~ryad~~i~ 211 (258)
T COG1120 138 E-----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG-LTVVMVLHDLNLAARYADHLIL 211 (258)
T ss_pred c-----cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEE
Confidence 8 999999999999999999999999999999999999999999999997655 4555567888999999999999
Q ss_pred EcCCeEEEEcChhhHHH
Q 000506 416 LSEGQIVYQGPREKVLE 432 (1458)
Q Consensus 416 L~~G~iv~~G~~~~~~~ 432 (1458)
|++|+++.+|++++++.
T Consensus 212 lk~G~i~a~G~p~evlT 228 (258)
T COG1120 212 LKDGKIVAQGTPEEVLT 228 (258)
T ss_pred EECCeEEeecCcchhcC
Confidence 99999999999988753
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=378.28 Aligned_cols=215 Identities=30% Similarity=0.449 Sum_probs=194.2
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|++..+. ...+|+|||++|++||+++|+|||||||||||++|||+.. +++|+|.|+|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 577888887663 1228999999999999999999999999999999999987 5899999999998
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000506 935 NQ-ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQR 1013 (1458)
Q Consensus 935 ~~-~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1013 (1458)
+. ...+|.+|+|+|+..++|++||+||+.|+.+++ ..++++.+++|+++.+.|+|.+..|++. ++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhH
Confidence 76 345689999999999999999999999998776 3467788899999999999999999874 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCC
Q 000506 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1014 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~ 1092 (1458)
|||+|||||+++|++++||||.|.||+..+..+...|+++.++ |.|+|.+|||. .|...++||+++|+ +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999999766 89999999996 48999999999998 589999988
Q ss_pred CC
Q 000506 1093 LG 1094 (1458)
Q Consensus 1093 ~~ 1094 (1458)
+.
T Consensus 218 p~ 219 (338)
T COG3839 218 PL 219 (338)
T ss_pred hH
Confidence 74
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=336.57 Aligned_cols=213 Identities=28% Similarity=0.378 Sum_probs=184.6
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
+.|+||+..|.. .+++|+|||++|++||++-|+||||||||||||+|.+... ++.|+|.++|+++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 567888766642 2569999999999999999999999999999999999877 58999999999864
Q ss_pred c------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000506 936 Q------ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 936 ~------~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1009 (1458)
. .-++|++|+|+||..+.++.||+||+.|...... .+.++.+++|.++|+.+||.+.++.. +..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 3 2357899999999999999999999999877653 45677788999999999999988876 45899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
|||+|||+||||++.+|++|+.||||-+||+..+..||+++.++.+.|.|||+.||+.+. +-.+-.|++.|.+ |+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~-Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALED-GRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeC-CEEEe
Confidence 999999999999999999999999999999999999999999999999999999998542 4444577888875 78876
Q ss_pred eCC
Q 000506 1090 AGP 1092 (1458)
Q Consensus 1090 ~G~ 1092 (1458)
...
T Consensus 218 d~~ 220 (223)
T COG2884 218 DES 220 (223)
T ss_pred ccc
Confidence 543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=355.56 Aligned_cols=196 Identities=27% Similarity=0.383 Sum_probs=173.1
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCCCCCCCC
Q 000506 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMT 260 (1458)
Q Consensus 181 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 260 (1458)
...++|+|+|++|.+||+++|+||||||||||||+|+|+.+|+ +|+|.++|.++. .+...++||+|++.++|-+|
T Consensus 14 ~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~T 88 (248)
T COG1116 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLT 88 (248)
T ss_pred CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhh
Confidence 3367999999999999999999999999999999999999998 999999999883 45678999999999999999
Q ss_pred HHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCC
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 340 (1458)
|+||+.|+...++... .| ....++..|+.+||.+..|..+..
T Consensus 89 v~~NV~l~l~~~~~~~----------~e------------------------~~~~a~~~L~~VgL~~~~~~~P~q---- 130 (248)
T COG1116 89 VLDNVALGLELRGKSK----------AE------------------------ARERAKELLELVGLAGFEDKYPHQ---- 130 (248)
T ss_pred HHhhheehhhccccch----------Hh------------------------HHHHHHHHHHHcCCcchhhcCccc----
Confidence 9999999887654211 01 112356689999999999988877
Q ss_pred CCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC--
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE-- 418 (1458)
Q Consensus 341 GLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~-- 418 (1458)
|||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.++.+ .+++.++|+.+|+..++|||++|++
T Consensus 131 -LSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~-~TvllVTHdi~EAv~LsdRivvl~~~P 208 (248)
T COG1116 131 -LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETR-KTVLLVTHDVDEAVYLADRVVVLSNRP 208 (248)
T ss_pred -cChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC-CEEEEEeCCHHHHHhhhCEEEEecCCC
Confidence 999999999999999999999999999999999999999999999987654 5667788999999999999999998
Q ss_pred CeE
Q 000506 419 GQI 421 (1458)
Q Consensus 419 G~i 421 (1458)
|+|
T Consensus 209 ~~i 211 (248)
T COG1116 209 GRI 211 (248)
T ss_pred cce
Confidence 444
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=358.77 Aligned_cols=207 Identities=29% Similarity=0.462 Sum_probs=177.6
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCC---CCCCCCCC
Q 000506 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQN---DLHFGEMT 260 (1458)
Q Consensus 184 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~---d~~~~~lT 260 (1458)
++|+|||+.+++|++++|+||||||||||+|+|+|+++|. +|+|.++|.+..+...+..||||||. |+-|| +|
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~t 93 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-IT 93 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCC-cC
Confidence 5999999999999999999999999999999999999998 99999999988776666789999995 56676 59
Q ss_pred HHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCC
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 340 (1458)
|+|.+..+..-+. .......++ ++..++.+|+.+|+.+.+|..+|+
T Consensus 94 V~d~V~~g~~~~~-----g~~~~~~~~-------------------------d~~~v~~aL~~Vgm~~~~~r~i~~---- 139 (254)
T COG1121 94 VKDVVLLGRYGKK-----GWFRRLNKK-------------------------DKEKVDEALERVGMEDLRDRQIGE---- 139 (254)
T ss_pred HHHHHHccCcccc-----cccccccHH-------------------------HHHHHHHHHHHcCchhhhCCcccc----
Confidence 9999987522110 000011111 123567799999999999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCe
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 341 GLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~ 420 (1458)
|||||+|||-|||||+.+|++|+|||||+|+|+.++..|.+.|+++.++ +.+|++++|+...+.++||+|+.| +++
T Consensus 140 -LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~L-n~~ 215 (254)
T COG1121 140 -LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICL-NRH 215 (254)
T ss_pred -cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEE-cCe
Confidence 9999999999999999999999999999999999999999999999875 466777899999999999999999 578
Q ss_pred EEEEcChhhHHH
Q 000506 421 IVYQGPREKVLE 432 (1458)
Q Consensus 421 iv~~G~~~~~~~ 432 (1458)
+++.|+++++.+
T Consensus 216 ~~~~G~~~~~~~ 227 (254)
T COG1121 216 LIASGPPEEVLT 227 (254)
T ss_pred eEeccChhhccC
Confidence 999999988753
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=377.82 Aligned_cols=216 Identities=28% Similarity=0.422 Sum_probs=194.2
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|++..+. ...+|+|||++|++||+++|+|||||||||||++|||... +.+|+|.++|+++
T Consensus 5 ~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 578888877663 4679999999999999999999999999999999999987 5899999999998
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000506 935 NQA-TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQR 1013 (1458)
Q Consensus 935 ~~~-~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1013 (1458)
... ..+|.+|+|+|+..+||++||+||+.|+.+++ ....+++.+++|+++++.++|.+..++++ .+||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHH
Confidence 653 45789999999999999999999999997743 33455678889999999999999988874 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCC
Q 000506 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1014 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~ 1092 (1458)
|||+|||||+.+|++|+||||.|+||..-+..+..-|+++.++ |.|.|++|||.. |...+.|||.+|++ |++.-.|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCC
Confidence 9999999999999999999999999999999999999998755 999999999975 78899999999985 79999998
Q ss_pred CC
Q 000506 1093 LG 1094 (1458)
Q Consensus 1093 ~~ 1094 (1458)
+.
T Consensus 221 P~ 222 (352)
T COG3842 221 PE 222 (352)
T ss_pred HH
Confidence 74
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=346.03 Aligned_cols=217 Identities=28% Similarity=0.380 Sum_probs=181.9
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc------cceEEEecCCCC
Q 000506 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP------QRTCAYISQNDL 254 (1458)
Q Consensus 181 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~ 254 (1458)
..+++|+|||+.|++||+++|+|||||||||||++|.|+.+++ +|+|.+||.++..... ++.+||++|++.
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 4567999999999999999999999999999999999999998 9999999988776542 467999999999
Q ss_pred CCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccc
Q 000506 255 HFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMV 334 (1458)
Q Consensus 255 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 334 (1458)
+.+.+||.||+..+...+. ...+.+ .++.+.+ .+...-..|+.+|+.+.+-++.
T Consensus 92 Lv~r~sv~~NVl~grl~~~--s~~~sl---------fglfsk~---------------dk~~Al~aLervgi~~~A~qra 145 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYT--STWRSL---------FGLFSKE---------------DKAQALDALERVGILDKAYQRA 145 (258)
T ss_pred cccccHHHHHHHhhhcccc--hHHHHH---------hCCCCHH---------------HHHHHHHHHHHcCcHHHHHHHh
Confidence 9999999999987643211 111111 1111111 1122334789999999999998
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEE
Q 000506 335 GDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNII 414 (1458)
Q Consensus 335 g~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~ 414 (1458)
+. |||||+|||+|||||+.+|++++-|||++.||+.++.++++.|+++++..|.|+|+.+ |..+-+.++||||+
T Consensus 146 ~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nL-H~vdlA~~Y~~Rii 219 (258)
T COG3638 146 ST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNL-HQVDLAKKYADRII 219 (258)
T ss_pred cc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEe-chHHHHHHHHhhhe
Confidence 88 9999999999999999999999999999999999999999999999988777777665 55789999999999
Q ss_pred EEcCCeEEEEcChhhHHH
Q 000506 415 LLSEGQIVYQGPREKVLE 432 (1458)
Q Consensus 415 lL~~G~iv~~G~~~~~~~ 432 (1458)
-|++|+|+|+||++++.+
T Consensus 220 gl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 220 GLKAGRIVFDGPASELTD 237 (258)
T ss_pred EecCCcEEEeCChhhhhH
Confidence 999999999999988654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=338.16 Aligned_cols=217 Identities=24% Similarity=0.347 Sum_probs=187.0
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCc---CCCceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~---~~~~~~G~i~i~g 931 (1458)
.++.+|++..|. .+++|+|||+.|++++++||||||||||||||++|.+.. ++-..+|+|.++|
T Consensus 7 ~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 578889888773 467999999999999999999999999999999999853 2335789999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL-TNAMVGLPGV 1005 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~ 1005 (1458)
+++.. ..+|+.+|.|+|.+.-|| +|++||+.|+.++....+ ++-++.|++.|+...|++- +|.+-. . .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~-s-a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHK-S-A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhC-C-c
Confidence 97643 357899999999999999 999999999988765433 6677889999999999864 343322 2 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1006 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
.+|||||+|||||||||+.+|+||+||||||+|||.+...|-+++.+++ +.-|||++||.+. ......|+...+.. |
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-G 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-c
Confidence 4799999999999999999999999999999999999999999999997 5689999999886 57778899999986 7
Q ss_pred EEEEeCCC
Q 000506 1086 QVIYAGPL 1093 (1458)
Q Consensus 1086 ~~~~~G~~ 1093 (1458)
+++++|+.
T Consensus 225 ~LvE~g~T 232 (253)
T COG1117 225 ELVEFGPT 232 (253)
T ss_pred EEEEEcCH
Confidence 99999986
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=374.52 Aligned_cols=214 Identities=29% Similarity=0.422 Sum_probs=188.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|++..+. .+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|++.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEec
Confidence 588999988763 2469999999999999999999999999999999999886 4789999999986
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000506 935 NQ--ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQ 1012 (1458)
Q Consensus 935 ~~--~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1012 (1458)
.. ...++.+|||+|++.+++.+||+|++.|.+.++. .+.++..++++++++.++|.+..++.++ +|||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHH
Confidence 43 2356789999999999999999999998665532 2334445678899999999988888764 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCC
Q 000506 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1013 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~ 1092 (1458)
|||++||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999986 68889999999986 79999998
Q ss_pred C
Q 000506 1093 L 1093 (1458)
Q Consensus 1093 ~ 1093 (1458)
.
T Consensus 222 ~ 222 (306)
T PRK13537 222 P 222 (306)
T ss_pred H
Confidence 5
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=334.80 Aligned_cols=207 Identities=29% Similarity=0.389 Sum_probs=182.6
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc--cccceEEEecCCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF--VPQRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 259 (1458)
..++++||||.++.||+++|+|||||||||+|++|++++.|+ +|+|+++|.+..+. ..++.+|.++.+.-++..|
T Consensus 14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~Rl 90 (245)
T COG4555 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARL 90 (245)
T ss_pred HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhh
Confidence 345899999999999999999999999999999999999999 99999999987543 2478899999888899999
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
|++|||.|.+++.+.. +.+ .+.+++.+.+.|+|.++.|+++|+
T Consensus 91 T~rEnl~~Fa~L~~l~----------~~~------------------------~kari~~l~k~l~l~~~~~rRv~~--- 133 (245)
T COG4555 91 TARENLKYFARLNGLS----------RKE------------------------IKARIAELSKRLQLLEYLDRRVGE--- 133 (245)
T ss_pred hHHHHHHHHHHHhhhh----------hhH------------------------HHHHHHHHHHHhChHHHHHHHHhh---
Confidence 9999999988875432 221 122456789999999999999998
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCC
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G 419 (1458)
+|-|+||||+|||||+.+|++++|||||||||..+...+.+.++++... + .+++..+|.++|+..+||+|++|++|
T Consensus 134 --~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e-g-r~viFSSH~m~EvealCDrvivlh~G 209 (245)
T COG4555 134 --FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE-G-RAVIFSSHIMQEVEALCDRVIVLHKG 209 (245)
T ss_pred --hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcC-C-cEEEEecccHHHHHHhhheEEEEecC
Confidence 9999999999999999999999999999999999999999999998753 4 45666778999999999999999999
Q ss_pred eEEEEcChhhHHH
Q 000506 420 QIVYQGPREKVLE 432 (1458)
Q Consensus 420 ~iv~~G~~~~~~~ 432 (1458)
++++.|+.+++..
T Consensus 210 evv~~gs~~~l~~ 222 (245)
T COG4555 210 EVVLEGSIEALDA 222 (245)
T ss_pred cEEEcCCHHHHHH
Confidence 9999999988754
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=336.94 Aligned_cols=223 Identities=27% Similarity=0.407 Sum_probs=179.7
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEECCeecCCcc-----ccceEEEecCCC
Q 000506 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD--DDLKLTGKIKYCGHEFKEFV-----PQRTCAYISQND 253 (1458)
Q Consensus 181 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d 253 (1458)
+++++|+|||+.|+++++||++|||||||||||++|..+.+ |..+++|+|.++|+++.+.. .|+++|+|+|.|
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 45679999999999999999999999999999999988754 45678999999999986542 378899999999
Q ss_pred CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc-cccc
Q 000506 254 LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI-CADT 332 (1458)
Q Consensus 254 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt 332 (1458)
.-|| +|++||+.|+.|..|... +.+ |.. ++..|+.-+|.+ ..|.
T Consensus 98 nPFp-~SIydNVayG~r~~g~~~--~~l------------------dei--------------Ve~sLk~AaLWdEVKDr 142 (253)
T COG1117 98 NPFP-MSIYDNVAYGLRLHGIKD--KEL------------------DEI--------------VESSLKKAALWDEVKDR 142 (253)
T ss_pred CCCC-chHHHHHHHhHHhhccch--HHH------------------HHH--------------HHHHHHHhHhHHHhHHH
Confidence 9999 899999999999877532 111 111 111222222211 1121
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCE
Q 000506 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412 (1458)
Q Consensus 333 ~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 412 (1458)
+ +....+||||||||+.|||||+.+|+|||||||||+|||.++..|.+++.++.+ .-+|+.++|.+..+.+..|+
T Consensus 143 L--~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~ 217 (253)
T COG1117 143 L--HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDY 217 (253)
T ss_pred h--hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHh
Confidence 1 122345999999999999999999999999999999999999999999999975 35666788999999999999
Q ss_pred EEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHH
Q 000506 413 IILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451 (1458)
Q Consensus 413 v~lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l 451 (1458)
...+..|++++.|+.+++ |..|..+.+.||+
T Consensus 218 taFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 218 TAFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 999999999999999987 4567777676664
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=372.43 Aligned_cols=217 Identities=23% Similarity=0.315 Sum_probs=187.8
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.++.. .+.+.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 5788998877411 012469999999999999999999999999999999999987 47999999999864
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000506 936 QA------TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 936 ~~------~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1009 (1458)
.. ..++.+||++|+..+++..||+||+.|....+ ..+.++.++++.++++.+||.+..|..+ +.||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23568999999999999999999999876533 2345566678999999999999888764 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1088 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~ 1088 (1458)
|||||||+|||||+.+|++|+||||||+||+.++..++++|++++++ |.|||++||+++ .+.+.||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999875 999999999986 57788999999985 7999
Q ss_pred EeCCC
Q 000506 1089 YAGPL 1093 (1458)
Q Consensus 1089 ~~G~~ 1093 (1458)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99985
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=344.02 Aligned_cols=195 Identities=27% Similarity=0.433 Sum_probs=167.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-------cceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-------QRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 255 (1458)
.++|+++|+.|++||+++|+|||||||||||++|.|+..|+ +|.|.++|.+++.... ++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 67999999999999999999999999999999999999998 9999999998876542 3579999999999
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccc-ccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICAD-TMV 334 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d-t~v 334 (1458)
+|++||+||+.+.+...+.... + .....+.+++.+||++..+ ..+
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~--------~--------------------------~~~~~~~l~~~lgl~~~~~~~~p 140 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG--------R--------------------------RKRAAEELLEVLGLEDRLLKKKP 140 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh--------H--------------------------HHHHHHHHHHhcCChhhhccCCc
Confidence 9999999999987665543211 0 1113456889999997666 778
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEE
Q 000506 335 GDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNII 414 (1458)
Q Consensus 335 g~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~ 414 (1458)
.+ |||||||||+|||||+.+|++++.||||.+||+.++..+++.+++++++.+ +++++++|+ +++...|||++
T Consensus 141 ~e-----LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g-~tii~VTHd-~~lA~~~dr~i 213 (226)
T COG1136 141 SE-----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERG-KTIIMVTHD-PELAKYADRVI 213 (226)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcC-CEEEEEcCC-HHHHHhCCEEE
Confidence 77 999999999999999999999999999999999999999999999987654 455556665 47888999999
Q ss_pred EEcCCeE
Q 000506 415 LLSEGQI 421 (1458)
Q Consensus 415 lL~~G~i 421 (1458)
.|.+|++
T Consensus 214 ~l~dG~~ 220 (226)
T COG1136 214 ELKDGKI 220 (226)
T ss_pred EEeCCee
Confidence 9999994
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=356.45 Aligned_cols=213 Identities=24% Similarity=0.365 Sum_probs=182.0
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5678877663 2469999999999999999999999999999999999876 478999999987543
Q ss_pred ------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 937 ------ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 937 ------~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
..+++.++|++|++.+++.+||+|++.+...... ..+.++..++++++++.++|.+..++.+ ..|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 2345679999999999999999999988643221 2234445567889999999988777665 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
||||||+||+||+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++ |++++
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~ 217 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVA 217 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999874 899999999986 57788999999985 78998
Q ss_pred eCCC
Q 000506 1090 AGPL 1093 (1458)
Q Consensus 1090 ~G~~ 1093 (1458)
.|+.
T Consensus 218 ~g~~ 221 (235)
T cd03261 218 EGTP 221 (235)
T ss_pred ecCH
Confidence 8875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=332.31 Aligned_cols=207 Identities=26% Similarity=0.367 Sum_probs=184.8
Q ss_pred cccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCccc----ccceEEEEccCCCCC
Q 000506 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT----FARVSGYCEQNDIHS 953 (1458)
Q Consensus 878 ~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~Q~~~~~ 953 (1458)
+++++++++||+.|++||+++|+|||||||||.+.++.|... +.+|+|.+||.+++... -+.-+||+||++..|
T Consensus 14 y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 14 YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred hCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 356789999999999999999999999999999999999987 58999999999876533 234589999999999
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000506 954 PHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDE 1033 (1458)
Q Consensus 954 ~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDE 1033 (1458)
..+||+||+......+.. +....+++++++++|+.+++.|+++.... .||||||+|+-|||||+.+|+.++|||
T Consensus 92 r~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~EIARaLa~~P~fiLLDE 165 (243)
T COG1137 92 RKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRVEIARALAANPKFILLDE 165 (243)
T ss_pred hcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHHHHHHHHhcCCCEEEecC
Confidence 999999999987766532 23345677788999999999999998743 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCC
Q 000506 1034 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1034 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~ 1094 (1458)
|++|+||.+...|.++++.+++.|.-|++|-|... |....|||.+++.+ |++...|.++
T Consensus 166 PFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ 224 (243)
T COG1137 166 PFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPE 224 (243)
T ss_pred CccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHH
Confidence 99999999999999999999999999999999986 78999999999996 7999999874
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=373.21 Aligned_cols=216 Identities=26% Similarity=0.375 Sum_probs=189.1
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|++..++ +++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 377888887762 12469999999999999999999999999999999999877 4799999999986
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000506 935 NQA-TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQR 1013 (1458)
Q Consensus 935 ~~~-~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1013 (1458)
... ..++.+|||+|++.++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 432 23578999999999999999999999986543 2345566678999999999999888775 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCC
Q 000506 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1014 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~ 1092 (1458)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++.+.+|++++|++ |+++..|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~ 218 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGT 218 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECC
Confidence 9999999999999999999999999999999999999999775 999999999986 68899999999985 79999998
Q ss_pred CC
Q 000506 1093 LG 1094 (1458)
Q Consensus 1093 ~~ 1094 (1458)
..
T Consensus 219 ~~ 220 (356)
T PRK11650 219 PV 220 (356)
T ss_pred HH
Confidence 63
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=372.81 Aligned_cols=215 Identities=26% Similarity=0.384 Sum_probs=190.0
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|++.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478899988763 2468999999999999999999999999999999999976 5799999999986
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000506 935 NQ-ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQR 1013 (1458)
Q Consensus 935 ~~-~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1013 (1458)
.. ...+|.+|||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 43 234578999999999999999999999986543 2345566778999999999999888764 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCC
Q 000506 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1014 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~ 1092 (1458)
|||+|||||+.+|++|+||||||+||..++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 78899999999985 79999998
Q ss_pred CC
Q 000506 1093 LG 1094 (1458)
Q Consensus 1093 ~~ 1094 (1458)
..
T Consensus 219 ~~ 220 (353)
T TIGR03265 219 PQ 220 (353)
T ss_pred HH
Confidence 63
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=369.88 Aligned_cols=215 Identities=25% Similarity=0.405 Sum_probs=190.1
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 578999988763 2458999999999999999999999999999999999987 4799999999986
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000506 935 NQA-TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQR 1013 (1458)
Q Consensus 935 ~~~-~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1013 (1458)
... ..++.+|||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ ..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 542 23578999999999999999999999987543 2345666778999999999998887764 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCC
Q 000506 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1014 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~ 1092 (1458)
|||+|||||+.+|++|+|||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++.+++|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999986 68899999999985 78999998
Q ss_pred CC
Q 000506 1093 LG 1094 (1458)
Q Consensus 1093 ~~ 1094 (1458)
..
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 63
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=372.76 Aligned_cols=207 Identities=29% Similarity=0.403 Sum_probs=180.3
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-cceEEEecCCCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEMT 260 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 260 (1458)
.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.+|||+|++.+||++|
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~t 92 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMS 92 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCC
Confidence 356999999999999999999999999999999999999998 9999999999876543 467999999999999999
Q ss_pred HHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCC
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 340 (1458)
|+||+.|+.+..+.. +.+ ....++.+++.+||++..|..+.+
T Consensus 93 v~eNi~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~---- 134 (356)
T PRK11650 93 VRENMAYGLKIRGMP----------KAE------------------------IEERVAEAARILELEPLLDRKPRE---- 134 (356)
T ss_pred HHHHHHhHHhhcCCC----------HHH------------------------HHHHHHHHHHHcCChhHhhCChhh----
Confidence 999999976543211 000 011345689999999999888876
Q ss_pred CCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCe
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 341 GLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~ 420 (1458)
|||||||||+|||||+.+|++|+|||||++||+.++.++.+.|+++.+..+ ++++.++|+..++.+++|+|++|++|+
T Consensus 135 -LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~l~D~i~vl~~G~ 212 (356)
T PRK11650 135 -LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLK-TTSLYVTHDQVEAMTLADRVVVMNGGV 212 (356)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999876544 556667788899999999999999999
Q ss_pred EEEEcChhhHH
Q 000506 421 IVYQGPREKVL 431 (1458)
Q Consensus 421 iv~~G~~~~~~ 431 (1458)
++..|+++++.
T Consensus 213 i~~~g~~~~~~ 223 (356)
T PRK11650 213 AEQIGTPVEVY 223 (356)
T ss_pred EEEECCHHHHH
Confidence 99999999874
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=367.53 Aligned_cols=215 Identities=25% Similarity=0.383 Sum_probs=188.3
Q ss_pred eEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCee
Q 000506 854 LSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP 933 (1458)
Q Consensus 854 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1458)
..++++|++..++ ++.+|+|||++|++||++||+|||||||||||++|+|..+ +.+|+|.++|++
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEE
Confidence 3588999998773 3469999999999999999999999999999999999887 478999999998
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000506 934 KNQ--ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 934 ~~~--~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1011 (1458)
... ...++.+||++|++.+++.+||+|++.+.+.++. .+..+..+.++++++.++|.+..++.++ +||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVS-----DLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHH
Confidence 643 2346789999999999999999999987655432 2334445567899999999988888764 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 999999999999999999999999999999999999999999878999999999986 68889999999985 7999999
Q ss_pred CC
Q 000506 1092 PL 1093 (1458)
Q Consensus 1092 ~~ 1093 (1458)
+.
T Consensus 255 ~~ 256 (340)
T PRK13536 255 RP 256 (340)
T ss_pred CH
Confidence 86
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=370.38 Aligned_cols=215 Identities=26% Similarity=0.356 Sum_probs=189.3
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCcee--eEEEECCe
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTE--GDISISGY 932 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~--G~i~i~g~ 932 (1458)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 478889988773 2469999999999999999999999999999999999887 467 99999998
Q ss_pred eCCc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000506 933 PKNQ-ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 933 ~~~~-~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1011 (1458)
+... ...++.+|||+|+..++|++||+||+.|+...+ ..+.++.+++++++++.++|.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 8643 224578999999999999999999999986543 2345566678999999999999888775 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
|||||+|||||+.+|++|+|||||||||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 799999999986 68889999999985 79999
Q ss_pred eCCCC
Q 000506 1090 AGPLG 1094 (1458)
Q Consensus 1090 ~G~~~ 1094 (1458)
.|+..
T Consensus 220 ~g~~~ 224 (362)
T TIGR03258 220 HGEPQ 224 (362)
T ss_pred EcCHH
Confidence 99863
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=370.40 Aligned_cols=207 Identities=27% Similarity=0.408 Sum_probs=180.9
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-cceEEEecCCCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEMT 260 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 260 (1458)
+..+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..+||++|
T Consensus 18 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~t 94 (351)
T PRK11432 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMS 94 (351)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCC
Confidence 356899999999999999999999999999999999999998 9999999999876544 478999999999999999
Q ss_pred HHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCC
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 340 (1458)
|+||+.|+.+.++... .+ ....++.+++.+||.+..|..+.+
T Consensus 95 v~eNi~~~l~~~~~~~----------~~------------------------~~~~v~~~l~~~gl~~~~~r~~~~---- 136 (351)
T PRK11432 95 LGENVGYGLKMLGVPK----------EE------------------------RKQRVKEALELVDLAGFEDRYVDQ---- 136 (351)
T ss_pred HHHHHHHHHhHcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhcCChhh----
Confidence 9999999865432210 00 112346688999999988888776
Q ss_pred CCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCe
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 341 GLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~ 420 (1458)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+ ++++.++|+.+++.+++|+|++|++|+
T Consensus 137 -LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~e~~~laD~i~vm~~G~ 214 (351)
T PRK11432 137 -ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFN-ITSLYVTHDQSEAFAVSDTVIVMNKGK 214 (351)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999976544 456667888999999999999999999
Q ss_pred EEEEcChhhHH
Q 000506 421 IVYQGPREKVL 431 (1458)
Q Consensus 421 iv~~G~~~~~~ 431 (1458)
++..|+++++.
T Consensus 215 i~~~g~~~~~~ 225 (351)
T PRK11432 215 IMQIGSPQELY 225 (351)
T ss_pred EEEEcCHHHHH
Confidence 99999999874
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=370.99 Aligned_cols=208 Identities=25% Similarity=0.374 Sum_probs=181.3
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc--cEEEECCeecCCccc-cceEEEecCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLT--GKIKYCGHEFKEFVP-QRTCAYISQNDLHFGE 258 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~--G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~ 258 (1458)
...+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ + |+|.++|+++....+ ++.++||+|++.+||.
T Consensus 17 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~ 93 (362)
T TIGR03258 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPH 93 (362)
T ss_pred CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCC
Confidence 346999999999999999999999999999999999999998 8 999999998865443 4679999999999999
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
+||+||+.|+.+..+... .+ ....++.+++.+||++..|+.+.+
T Consensus 94 ~tv~enl~~~l~~~~~~~----------~~------------------------~~~~v~~~l~~~gL~~~~~~~~~~-- 137 (362)
T TIGR03258 94 LKVEDNVAFGLRAQKMPK----------AD------------------------IAERVADALKLVGLGDAAAHLPAQ-- 137 (362)
T ss_pred CcHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHhcCCCchhhCChhh--
Confidence 999999999865432110 00 011346689999999999988877
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++++++.++|+.+++..++|+|++|++
T Consensus 138 ---LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~ 214 (362)
T TIGR03258 138 ---LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKD 214 (362)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999998754245667788899999999999999999
Q ss_pred CeEEEEcChhhHH
Q 000506 419 GQIVYQGPREKVL 431 (1458)
Q Consensus 419 G~iv~~G~~~~~~ 431 (1458)
|+++..|+++++.
T Consensus 215 G~i~~~g~~~~~~ 227 (362)
T TIGR03258 215 GRLAAHGEPQALY 227 (362)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999999884
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=370.51 Aligned_cols=207 Identities=29% Similarity=0.443 Sum_probs=180.4
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-cceEEEecCCCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEMT 260 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 260 (1458)
.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..+||++|
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~t 92 (353)
T TIGR03265 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLT 92 (353)
T ss_pred CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCc
Confidence 356999999999999999999999999999999999999998 9999999999876443 467999999999999999
Q ss_pred HHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCC
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 340 (1458)
|+||+.|+.+.++.. +.+ ....++.+++.+||++..|+.+.+
T Consensus 93 v~eNi~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~l~L~~~~~~~~~~---- 134 (353)
T TIGR03265 93 VADNIAYGLKNRGMG----------RAE------------------------VAERVAELLDLVGLPGSERKYPGQ---- 134 (353)
T ss_pred HHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCCCchhhCChhh----
Confidence 999999976533211 000 112346689999999999888876
Q ss_pred CCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCe
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 341 GLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~ 420 (1458)
|||||||||+|||||+.+|+++|||||+++||..++.++.+.|+++.+..+ ++++.++|+.+++..++|+|++|++|+
T Consensus 135 -LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~-~tvi~vTHd~~ea~~l~d~i~vl~~G~ 212 (353)
T TIGR03265 135 -LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLG-VTTIMVTHDQEEALSMADRIVVMNHGV 212 (353)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999977544 455667788899999999999999999
Q ss_pred EEEEcChhhHH
Q 000506 421 IVYQGPREKVL 431 (1458)
Q Consensus 421 iv~~G~~~~~~ 431 (1458)
+++.|+++++.
T Consensus 213 i~~~g~~~~~~ 223 (353)
T TIGR03265 213 IEQVGTPQEIY 223 (353)
T ss_pred EEEEcCHHHHH
Confidence 99999998874
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=336.09 Aligned_cols=217 Identities=26% Similarity=0.352 Sum_probs=182.0
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++.+|++..++... ...++|+|||++|.+||++||+|+||||||||.++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCccc
Confidence 467888887775321 11259999999999999999999999999999999999987 4899999999876
Q ss_pred Ccc----cccceEEEEccCCC--CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCC
Q 000506 935 NQA----TFARVSGYCEQNDI--HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT-NAMVGLPGVDG 1007 (1458)
Q Consensus 935 ~~~----~~~~~~gyv~Q~~~--~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~ 1007 (1458)
... .+.+.+.+|+||+. +.|..||++.|.-.... ...++.++ ++.++++.+||.+.. ++. +.+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~~--~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQQ--RIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHHH--HHHHHHHHcCCCHHHHhcC-----chh
Confidence 543 36688999999985 66999999988765433 23333333 389999999998643 433 458
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1008 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
||||||||++|||||+.+|++|+||||||+||+..+..|+++|.++.++ |.|.|+++||.+ -+..+|||+++|++ |+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-Ce
Confidence 9999999999999999999999999999999999999999999999765 789999999987 47889999999986 79
Q ss_pred EEEeCCCC
Q 000506 1087 VIYAGPLG 1094 (1458)
Q Consensus 1087 ~~~~G~~~ 1094 (1458)
++..+|.+
T Consensus 220 ivE~~~~~ 227 (252)
T COG1124 220 IVEIGPTE 227 (252)
T ss_pred EEEeechh
Confidence 99999863
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=347.93 Aligned_cols=215 Identities=25% Similarity=0.369 Sum_probs=190.3
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.+.++|++|.++. +..+|+|+|++|++||.++|+|+||||||||+++|+|... +.+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeec
Confidence 3678899998742 2579999999999999999999999999999999999987 4789999999985
Q ss_pred C----cccccceEEEEccCCCC-CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000506 935 N----QATFARVSGYCEQNDIH-SPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 935 ~----~~~~~~~~gyv~Q~~~~-~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1009 (1458)
. ...+++.+|||+|++.. +..-||.|.+.|+..- ...+.++.+++++++++.+|+.+.+++.+ ..||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n---~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN---LGLPREEIEERVAEALELVGLEELLDRPP-----FNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhh---cCCCHHHHHHHHHHHHHHcCchhhccCCc-----cccC
Confidence 4 34678899999999864 4577999999998643 34566778899999999999999988764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1088 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~ 1088 (1458)
|||||||+||.+|+.+|++|+|||||||||+.+...+++.++++.++ |+|||++|||.. .+.+.+|++++|++ |+++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~ 218 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKIL 218 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEe
Confidence 99999999999999999999999999999999999999999999877 689999999986 58888999999986 7999
Q ss_pred EeCCC
Q 000506 1089 YAGPL 1093 (1458)
Q Consensus 1089 ~~G~~ 1093 (1458)
+.|++
T Consensus 219 ~~g~p 223 (235)
T COG1122 219 ADGDP 223 (235)
T ss_pred ecCCH
Confidence 99985
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=346.57 Aligned_cols=210 Identities=30% Similarity=0.448 Sum_probs=178.0
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 4677777663 2469999999999999999999999999999999999876 478999999987643
Q ss_pred -ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000506 937 -ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKR 1015 (1458)
Q Consensus 937 -~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1015 (1458)
...++.++|++|++.+++.+||+|++.+..... ....+..++.++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 223467999999999889999999998865332 1233444567889999999988777664 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1016 l~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999764 899999999986 57788999999986 6777654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=367.93 Aligned_cols=218 Identities=28% Similarity=0.422 Sum_probs=188.4
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+. .+.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|++.
T Consensus 2 ~L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 66 (353)
T PRK10851 2 SIEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDV 66 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 367888887763 2469999999999999999999999999999999999876 4789999999986
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000506 935 NQA-TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQ 1012 (1458)
Q Consensus 935 ~~~-~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1012 (1458)
... ..++.+|||+|++.++|++||+||+.|+...+.. ...+.++.+++++++++.++|.+..++.+ ..|||||
T Consensus 67 ~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq 141 (353)
T PRK10851 67 SRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQ 141 (353)
T ss_pred CCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 432 2346799999999999999999999997654211 12344556678999999999998888765 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1013 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.+.+|++++|++ |++++.|
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g 219 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAG 219 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999999876 899999999986 68889999999985 7999999
Q ss_pred CCC
Q 000506 1092 PLG 1094 (1458)
Q Consensus 1092 ~~~ 1094 (1458)
+..
T Consensus 220 ~~~ 222 (353)
T PRK10851 220 TPD 222 (353)
T ss_pred CHH
Confidence 863
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=347.45 Aligned_cols=208 Identities=25% Similarity=0.349 Sum_probs=176.9
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 567888887631 12359999999999999999999999999999999999876 47899999998753
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000506 936 QA------TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 936 ~~------~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1009 (1458)
.. .+++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.++|.+..++.+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 24567999999999999999999999875432 1233444567899999999988777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999999877999999999986 57778999999986 54
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=365.07 Aligned_cols=202 Identities=27% Similarity=0.401 Sum_probs=178.3
Q ss_pred cceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc--ccccceEEEEccCCCCCCCCC
Q 000506 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ--ATFARVSGYCEQNDIHSPHVT 957 (1458)
Q Consensus 880 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 957 (1458)
++.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 3569999999999999999999999999999999999876 478999999987643 234567999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000506 958 VYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037 (1458)
Q Consensus 958 V~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsg 1037 (1458)
|+|++.+.+.++. .+..+.+++++++++.++|.+..++.++ .|||||||||+||+||+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765542 2334445678999999999988887754 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1038 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1038 LD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999878999999999986 67889999999985 799999875
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=318.35 Aligned_cols=201 Identities=25% Similarity=0.406 Sum_probs=174.8
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-cceEEEecCCCCCCCCCCHHHHHH
Q 000506 188 DVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEMTVRETMD 266 (1458)
Q Consensus 188 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 266 (1458)
..++.|++||+++|+||||||||||||+|+|+..|. +|+|.+||++.+...+ +|-++.++|+..+|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 467889999999999999999999999999999998 9999999999887665 467999999999999999999998
Q ss_pred HhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCCCChHH
Q 000506 267 FSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQ 346 (1458)
Q Consensus 267 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGLSGGq 346 (1458)
++.. ++-+ +.. +.+..++.++...||..+.+.+++. |||||
T Consensus 94 LGl~---P~Lk------L~a-------------------------~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGq 134 (231)
T COG3840 94 LGLS---PGLK------LNA-------------------------EQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQ 134 (231)
T ss_pred ccCC---cccc------cCH-------------------------HHHHHHHHHHHHhChhhHhhhCccc-----cCchH
Confidence 8642 1111 000 0122456789999999999999988 99999
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeEEEEcC
Q 000506 347 KKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGP 426 (1458)
Q Consensus 347 kkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~iv~~G~ 426 (1458)
||||++||+|+.+-+|++||||+|+||+.-+.++...+.+++.+.+.|+++. +|+.+++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmV-TH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMV-THHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEE-eCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 9999999999999999999999999999999999999999998876666555 555678999999999999999999999
Q ss_pred hhhHH
Q 000506 427 REKVL 431 (1458)
Q Consensus 427 ~~~~~ 431 (1458)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 98865
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=318.64 Aligned_cols=196 Identities=26% Similarity=0.372 Sum_probs=174.1
Q ss_pred cceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHHHHHHH
Q 000506 886 DVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ-ATFARVSGYCEQNDIHSPHVTVYESLLF 964 (1458)
Q Consensus 886 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTV~e~l~f 964 (1458)
..++.|.+||++||+||||||||||||.|+|... +.+|+|.|||++... ....|-++.++|+.++|.++||.+|+.+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 4678899999999999999999999999999987 479999999998754 3456789999999999999999999988
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000506 965 SAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044 (1458)
Q Consensus 965 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~ 1044 (1458)
+..-. .... .+.+++++.++..+||..+.+++.+ +|||||||||++||+|+++-+|++||||+|.||+.-+.
T Consensus 95 Gl~P~--LkL~-a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPG--LKLN-AEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCcc--cccC-HHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 74321 1222 3455679999999999999988754 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1045 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1045 ~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
++..++.+++++ +.|++++||+|+ +.....|+++++++ |++.+.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 999999999865 899999999997 79999999999986 799999985
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=345.76 Aligned_cols=215 Identities=26% Similarity=0.395 Sum_probs=181.0
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 70 (220)
T cd03293 2 EVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG 70 (220)
T ss_pred eEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc
Confidence 467777766310 011469999999999999999999999999999999999876 478999999987642
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000506 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRL 1016 (1458)
Q Consensus 937 ~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl 1016 (1458)
.++.++|++|++.+++.+||+|++.+....+ ....+...+.++++++.++|.+..++.+ ..||||||||+
T Consensus 71 --~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 71 --PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred --ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 4567999999999889999999998875433 1233444567899999999988777664 47999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEEEEec-CcEEEEeCCC
Q 000506 1017 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKR-GGQVIYAGPL 1093 (1458)
Q Consensus 1017 ~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq~s~~i~~~~D~vlll~~-gG~~~~~G~~ 1093 (1458)
+||+||+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ .|+++..+++
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999999999999865 4899999999986 57788999999985 4899888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=369.81 Aligned_cols=218 Identities=28% Similarity=0.386 Sum_probs=185.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-cceEEEecCCCCCCCCCCH
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEMTV 261 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 261 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|++.+||++||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 45999999999999999999999999999999999999998 9999999999876543 4679999999999999999
Q ss_pred HHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCC
Q 000506 262 RETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRG 341 (1458)
Q Consensus 262 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 341 (1458)
+||+.|+.+.++... .+ ....++.+++.+||++..|..+..
T Consensus 104 ~eNi~~~l~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~p~~----- 144 (375)
T PRK09452 104 FENVAFGLRMQKTPA----------AE------------------------ITPRVMEALRMVQLEEFAQRKPHQ----- 144 (375)
T ss_pred HHHHHHHHhhcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhCChhh-----
Confidence 999999765332110 00 011345688999999999888876
Q ss_pred CChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeE
Q 000506 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421 (1458)
Q Consensus 342 LSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~i 421 (1458)
|||||||||+|||||+.+|++||||||++|||..++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g-~tiI~vTHd~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLG-ITFVFVTHDQEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987544 5566678889999999999999999999
Q ss_pred EEEcChhhHHHHHHhcCCCCCCCCCHHHHH
Q 000506 422 VYQGPREKVLEFFEYMGFKCPDRKGVADFL 451 (1458)
Q Consensus 422 v~~G~~~~~~~~F~~~G~~~p~~~~~ad~l 451 (1458)
+..|+++++. ..|....+++|+
T Consensus 224 ~~~g~~~~i~--------~~p~~~~~a~~~ 245 (375)
T PRK09452 224 EQDGTPREIY--------EEPKNLFVARFI 245 (375)
T ss_pred EEEcCHHHHH--------hCcccHHHHHhc
Confidence 9999998873 345544455544
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=367.35 Aligned_cols=215 Identities=24% Similarity=0.365 Sum_probs=189.1
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478999988773 2468999999999999999999999999999999999887 4789999999986
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000506 935 NQ-ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQR 1013 (1458)
Q Consensus 935 ~~-~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1013 (1458)
.. ...++.+|||+|++.++|++||+||+.|+...+ ..+..+.+++++++++.++|.+..++.+ ..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 223578999999999999999999999986533 2344555677899999999999888775 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCC
Q 000506 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1014 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~ 1092 (1458)
|||+|||||+.+|++|+|||||||||..++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999865 999999999986 68899999999985 79999998
Q ss_pred CC
Q 000506 1093 LG 1094 (1458)
Q Consensus 1093 ~~ 1094 (1458)
..
T Consensus 229 ~~ 230 (375)
T PRK09452 229 PR 230 (375)
T ss_pred HH
Confidence 63
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=360.85 Aligned_cols=214 Identities=26% Similarity=0.395 Sum_probs=184.9
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+. ++.+|+|||++|++||++||+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478899988763 2469999999999999999999999999999999999876 4789999999876
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000506 935 NQ--ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQ 1012 (1458)
Q Consensus 935 ~~--~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1012 (1458)
.. ...++.+||++|++.+++.+||+|++.+.+... ..+.++..+.++++++.++|.+..++.++ .|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHH
Confidence 32 234567999999999999999999998755432 12334445567889999999988877754 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCC
Q 000506 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1013 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~ 1092 (1458)
|||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 67789999999985 78999987
Q ss_pred C
Q 000506 1093 L 1093 (1458)
Q Consensus 1093 ~ 1093 (1458)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 5
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=343.22 Aligned_cols=209 Identities=25% Similarity=0.440 Sum_probs=178.6
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 4677777652 2459999999999999999999999999999999999876 479999999987643
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000506 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRL 1016 (1458)
Q Consensus 937 ~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl 1016 (1458)
..++.++|++|++.+++.+||+|++.+....+. ....+.++.++++++.+++.+..++.+ ..||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHH
Confidence 345679999999999999999999988654432 233444567889999999988777654 47999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1017 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1017 ~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999877899999999986 57788999999985 6777654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=361.32 Aligned_cols=207 Identities=29% Similarity=0.415 Sum_probs=178.8
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc--ccceEEEecCCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV--PQRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 259 (1458)
.+.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+
T Consensus 19 ~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 95 (306)
T PRK13537 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDF 95 (306)
T ss_pred CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCC
Confidence 356999999999999999999999999999999999999998 999999999876432 346799999999999999
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
||+||+.|.++..+.... + ....++.+++.+||.+..++.++.
T Consensus 96 tv~e~l~~~~~~~~~~~~-----~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~--- 138 (306)
T PRK13537 96 TVRENLLVFGRYFGLSAA-----A-----------------------------ARALVPPLLEFAKLENKADAKVGE--- 138 (306)
T ss_pred cHHHHHHHHHHHcCCCHH-----H-----------------------------HHHHHHHHHHHcCCchHhcCchhh---
Confidence 999999986654332100 0 011235578899999999998876
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCC
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G 419 (1458)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ . +++|+.++|..+++.++||+|++|++|
T Consensus 139 --LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~till~sH~l~e~~~~~d~i~il~~G 214 (306)
T PRK13537 139 --LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVIEEG 214 (306)
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999965 2 456666778899999999999999999
Q ss_pred eEEEEcChhhHHH
Q 000506 420 QIVYQGPREKVLE 432 (1458)
Q Consensus 420 ~iv~~G~~~~~~~ 432 (1458)
++++.|+++++.+
T Consensus 215 ~i~~~g~~~~l~~ 227 (306)
T PRK13537 215 RKIAEGAPHALIE 227 (306)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998754
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=344.80 Aligned_cols=212 Identities=28% Similarity=0.396 Sum_probs=181.3
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.+. ++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCc
Confidence 5677777663 2469999999999999999999999999999999999876 478999999987532
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000506 937 --ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014 (1458)
Q Consensus 937 --~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1014 (1458)
...++.++|++|++.+++.+||+|++.+....+ ..+.++.++.++++++.++|.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHH
Confidence 234567999999999999999999998875443 1233344567899999999988777765 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1015 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
|++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 999999999999999999999999999999999999999876 899999999986 57788999999985 788888764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=364.19 Aligned_cols=209 Identities=24% Similarity=0.351 Sum_probs=181.2
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-------cceEEEecCCC
Q 000506 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-------QRTCAYISQND 253 (1458)
Q Consensus 181 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d 253 (1458)
+.+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 3456999999999999999999999999999999999999998 9999999999876543 46799999999
Q ss_pred CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccc
Q 000506 254 LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTM 333 (1458)
Q Consensus 254 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 333 (1458)
.++|++||+||+.|+.+..+... .+ ....+..+++.+||++..++.
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~vgL~~~~~~~ 126 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPE----------QE------------------------RKEKALELLKLVGLEEYEHRY 126 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHhcCCchhhhCC
Confidence 99999999999999765433210 00 011345578999999888888
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEE
Q 000506 334 VGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413 (1458)
Q Consensus 334 vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v 413 (1458)
+++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.++++.+..+ .+|+.++|+.+++.+++|+|
T Consensus 127 p~~-----LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~-~Tii~vTHd~~ea~~~~drI 200 (363)
T TIGR01186 127 PDE-----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ-KTIVFITHDLDEAIRIGDRI 200 (363)
T ss_pred hhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEE
Confidence 887 999999999999999999999999999999999999999999999976444 45666788899999999999
Q ss_pred EEEcCCeEEEEcChhhHHH
Q 000506 414 ILLSEGQIVYQGPREKVLE 432 (1458)
Q Consensus 414 ~lL~~G~iv~~G~~~~~~~ 432 (1458)
++|++|+++..|+++++..
T Consensus 201 ~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 201 VIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEEeCCEEEeeCCHHHHHh
Confidence 9999999999999988753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=342.56 Aligned_cols=210 Identities=28% Similarity=0.415 Sum_probs=178.8
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 5677877663 2469999999999999999999999999999999999876 478999999987643
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000506 937 A-TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKR 1015 (1458)
Q Consensus 937 ~-~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1015 (1458)
. ..++.++|++|++.+++..||+||+.+....+ ....++.++.++++++.+++.+..+..+ ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHH
Confidence 2 23467999999999888999999998865432 1233444567889999999988777765 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1016 l~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
++||++|+.+|++++|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999864 899999999986 57788999999985 7887765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=361.93 Aligned_cols=206 Identities=26% Similarity=0.338 Sum_probs=178.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc------cceEEEecCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP------QRTCAYISQNDLHF 256 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 256 (1458)
+++|+|||++|++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++..... ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999998 9999999999876432 45799999999999
Q ss_pred CCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccC
Q 000506 257 GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD 336 (1458)
Q Consensus 257 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 336 (1458)
+.+||+||+.|..+..+... .+ ....+..+++.+||++..|..+++
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------~~------------------------~~~~v~e~l~~vgL~~~~~~~~~~ 140 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------DE------------------------IKRKVTELLALVGLGDKHDSYPSN 140 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhCChhh
Confidence 99999999998655332110 00 011245688999999988888876
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+ .+|+.++|+.+.+.++||+|++|
T Consensus 141 -----LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g-~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 141 -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLG-LTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred -----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999987545 45566778899999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000506 417 SEGQIVYQGPREKVL 431 (1458)
Q Consensus 417 ~~G~iv~~G~~~~~~ 431 (1458)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=325.67 Aligned_cols=214 Identities=23% Similarity=0.361 Sum_probs=184.2
Q ss_pred ccccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcccc----ceEEEecCC
Q 000506 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ----RTCAYISQN 252 (1458)
Q Consensus 177 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~ 252 (1458)
.++.+++++++|||+.+++||+++|+|||||||||.+.++.|+.+|+ +|+|.++|.+++.+... .-+||+||+
T Consensus 11 ~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE 87 (243)
T COG1137 11 AKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQE 87 (243)
T ss_pred hHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCccccccc
Confidence 34556778999999999999999999999999999999999999999 99999999999987643 348999999
Q ss_pred CCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccc
Q 000506 253 DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADT 332 (1458)
Q Consensus 253 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 332 (1458)
+..|..+||+|||.-....+.... .+ .+.+...+.+|+.|+|.|++|.
T Consensus 88 ~SIFr~LtV~dNi~~vlE~~~~d~--------~~------------------------~~~~~~l~~LL~ef~i~hlr~~ 135 (243)
T COG1137 88 ASIFRKLTVEDNIMAVLEIREKDL--------KK------------------------AERKEELDALLEEFHITHLRDS 135 (243)
T ss_pred chHhhcCcHHHHHHHHHhhhhcch--------hH------------------------HHHHHHHHHHHHHhchHHHhcC
Confidence 999999999999987654432100 00 0122345678999999999998
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCE
Q 000506 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412 (1458)
Q Consensus 333 ~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 412 (1458)
+-.. ||||||+|+.|||||+.+|+.++||||++|.||.+..+|.+.++.+.+. + .-|++.-|+..|+...+||
T Consensus 136 ~a~s-----LSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~r-g-iGvLITDHNVREtL~i~dR 208 (243)
T COG1137 136 KAYS-----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR-G-IGVLITDHNVRETLDICDR 208 (243)
T ss_pred cccc-----cccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhC-C-ceEEEccccHHHHHhhhhe
Confidence 8666 9999999999999999999999999999999999999999999999863 4 4455567889999999999
Q ss_pred EEEEcCCeEEEEcChhhHHH
Q 000506 413 IILLSEGQIVYQGPREKVLE 432 (1458)
Q Consensus 413 v~lL~~G~iv~~G~~~~~~~ 432 (1458)
.+++++|++..+|+++++.+
T Consensus 209 aYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 209 AYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred EEEEecCeEEecCCHHHHhc
Confidence 99999999999999999864
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=365.09 Aligned_cols=215 Identities=26% Similarity=0.393 Sum_probs=188.9
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|++..+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 588999987763 2468999999999999999999999999999999999987 4789999999986
Q ss_pred Cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000506 935 NQ-ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQR 1013 (1458)
Q Consensus 935 ~~-~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1013 (1458)
.. ...+|.+|||+|++.++|++||.||+.|+...+ ..+.++.+++++++++.++|.+..++.+ .+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234678999999999999999999999976543 2345566678999999999998888764 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCC
Q 000506 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1014 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~ 1092 (1458)
|||+|||||+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998654 899999999986 68899999999985 79999998
Q ss_pred CC
Q 000506 1093 LG 1094 (1458)
Q Consensus 1093 ~~ 1094 (1458)
+.
T Consensus 234 ~~ 235 (377)
T PRK11607 234 PE 235 (377)
T ss_pred HH
Confidence 63
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=347.54 Aligned_cols=215 Identities=27% Similarity=0.384 Sum_probs=180.6
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 4667776653 2459999999999999999999999999999999999876 478999999987643
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000506 937 A---T-FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSD-------IDSKTRKMFVDEVMDLVELEPLTNAMVGLPGV 1005 (1458)
Q Consensus 937 ~---~-~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~-------~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 1005 (1458)
. . .++.++|++|++.+++.+||+|++.+....+.... ...++..+.++++++.+++.+..++.+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 2 1 23569999999999999999999988754322110 113344567889999999988777654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1006 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-G 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-C
Confidence 479999999999999999999999999999999999999999999999878999999999986 57788999999985 7
Q ss_pred EEEEeCCC
Q 000506 1086 QVIYAGPL 1093 (1458)
Q Consensus 1086 ~~~~~G~~ 1093 (1458)
++++.|+.
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 88888875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=344.59 Aligned_cols=207 Identities=27% Similarity=0.386 Sum_probs=181.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecC----CccccceEEEecCCC-CCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFK----EFVPQRTCAYISQND-LHFG 257 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~----~~~~~~~~~yv~Q~d-~~~~ 257 (1458)
..+|+|+|+.+++||.++|+||||||||||+++|+|+++|. +|+|.++|.+.. ....++.+|||+|++ ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999998 899999999876 233468899999995 4566
Q ss_pred CCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCc
Q 000506 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQ 337 (1458)
Q Consensus 258 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 337 (1458)
..||.|.++|+.+..+.... + ...+++.+++.+||.+.+|..+-+
T Consensus 94 ~~tV~~evafg~~n~g~~~~-----e-----------------------------~~~rv~~~l~~vgl~~~~~r~p~~- 138 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPRE-----E-----------------------------IEERVAEALELVGLEELLDRPPFN- 138 (235)
T ss_pred cCcHHHHHhhchhhcCCCHH-----H-----------------------------HHHHHHHHHHHcCchhhccCCccc-
Confidence 77999999999887664321 0 122456789999999999988877
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEc
Q 000506 338 MRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417 (1458)
Q Consensus 338 ~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~ 417 (1458)
|||||||||+||.+|+.+|++|+|||||+|||+..+.++++.++++.+. ++.+++.++|+.+.+.+++|++++|+
T Consensus 139 ----LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 139 ----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred ----cCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999875 34566678899999999999999999
Q ss_pred CCeEEEEcChhhHHH
Q 000506 418 EGQIVYQGPREKVLE 432 (1458)
Q Consensus 418 ~G~iv~~G~~~~~~~ 432 (1458)
+|+++++|+++++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999887754
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=364.36 Aligned_cols=217 Identities=23% Similarity=0.321 Sum_probs=185.6
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|++++++.. .+.+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5788998877410 113569999999999999999999999999999999999986 47899999999864
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000506 936 QA------TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 936 ~~------~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1009 (1458)
.. ..++.+||++|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23567999999999999999999999875443 2234445567899999999988877764 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1088 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~ 1088 (1458)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 57788999999985 7899
Q ss_pred EeCCC
Q 000506 1089 YAGPL 1093 (1458)
Q Consensus 1089 ~~G~~ 1093 (1458)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 98875
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=346.75 Aligned_cols=217 Identities=28% Similarity=0.411 Sum_probs=182.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 467889888763 2469999999999999999999999999999999999876 4789999999876
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000506 935 NQA-TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQ 1012 (1458)
Q Consensus 935 ~~~-~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1012 (1458)
... ..++.++|++|++.+++.+||+|++.+....+.. .....++..+.++++++.++|.+..++.+ ..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 432 2246799999999998999999999886543211 00122334456889999999987777664 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1013 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99999999999999999999999999999999999999999875 899999999986 57788999999985 7898888
Q ss_pred CC
Q 000506 1092 PL 1093 (1458)
Q Consensus 1092 ~~ 1093 (1458)
+.
T Consensus 220 ~~ 221 (239)
T cd03296 220 TP 221 (239)
T ss_pred CH
Confidence 75
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=343.33 Aligned_cols=215 Identities=27% Similarity=0.430 Sum_probs=181.2
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.++.. .+...+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|++..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 5678888776311 011269999999999999999999999999999999999876 47899999998764
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000506 936 Q--ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQR 1013 (1458)
Q Consensus 936 ~--~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1013 (1458)
. ..+++.++|++|++.+++.+||+||+.+....+ ....++..+.++++++.+++.+..+..+ ..||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 234578999999999899999999998765433 2234445567899999999988777664 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1014 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999877999999999986 57788999999986 6777654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=363.88 Aligned_cols=204 Identities=25% Similarity=0.332 Sum_probs=180.2
Q ss_pred ccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcc---cc----cceEEEEccCCC
Q 000506 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA---TF----ARVSGYCEQNDI 951 (1458)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~gyv~Q~~~ 951 (1458)
+.+.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... .+ ++.+|||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 34669999999999999999999999999999999999987 4899999999986532 22 568999999999
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000506 952 HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFM 1031 (1458)
Q Consensus 952 ~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illL 1031 (1458)
++|++||+||+.|...+. ..+.+++.+++.++++.+||.+..++.+ ..|||||||||+|||||+.+|+||+|
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999976543 2345666778999999999988877765 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCC
Q 000506 1032 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~ 1094 (1458)
||||+|||+.++..+++.++++.++ |+|||++||++. ++.+.+|++++|++ |+++..|+..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~~ 215 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTPD 215 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCHH
Confidence 9999999999999999999999765 899999999986 57889999999985 7999999753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=366.14 Aligned_cols=215 Identities=27% Similarity=0.397 Sum_probs=186.8
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 377889988763 2469999999999999999999999999999999999876 4789999999986
Q ss_pred Ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000506 935 NQA-TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQR 1013 (1458)
Q Consensus 935 ~~~-~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1013 (1458)
... ..++.+|||+|+..+++.+||+||+.|....+ ..+.++.+++++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 432 23467999999999999999999999876543 2234455667899999999998887765 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCC
Q 000506 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1014 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~ 1092 (1458)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++.+.+|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999986 68889999999985 79999988
Q ss_pred CC
Q 000506 1093 LG 1094 (1458)
Q Consensus 1093 ~~ 1094 (1458)
..
T Consensus 218 ~~ 219 (369)
T PRK11000 218 PL 219 (369)
T ss_pred HH
Confidence 53
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=367.75 Aligned_cols=229 Identities=27% Similarity=0.359 Sum_probs=190.9
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|++.
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 377889888763 3569999999999999999999999999999999999876 4789999999876
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
.. ...++.+|||+|++.+++.+||+|++.++...... .....++.+++++++++.+++.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 43 34567899999999998999999999886432110 01112334567899999999998888765 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEe
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~ 1090 (1458)
|||||+.|||||+++|++|+|||||+|||+.++..++++|++++++|+|||+++|+++ ++.+.||++++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 57889999999985 789999
Q ss_pred CCCCc--chHHHHHHHH
Q 000506 1091 GPLGR--QSQKLVEYFE 1105 (1458)
Q Consensus 1091 G~~~~--~~~~~~~~f~ 1105 (1458)
|+..+ ..+.+.+-|.
T Consensus 221 G~~~ev~~~~~l~~~~~ 237 (402)
T PRK09536 221 GPPADVLTADTLRAAFD 237 (402)
T ss_pred cCHHHHhCcHHHHHHhC
Confidence 98642 1223555553
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=335.02 Aligned_cols=226 Identities=26% Similarity=0.366 Sum_probs=190.4
Q ss_pred cccccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcccc----ceEEEecC
Q 000506 176 LPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ----RTCAYISQ 251 (1458)
Q Consensus 176 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q 251 (1458)
+.++-+...+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...++ .-++--+|
T Consensus 10 l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ 86 (250)
T COG0411 10 LSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQ 86 (250)
T ss_pred ceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeecc
Confidence 345567788999999999999999999999999999999999999998 99999999999887764 34788899
Q ss_pred CCCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccc
Q 000506 252 NDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICAD 331 (1458)
Q Consensus 252 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 331 (1458)
+..+|++|||.||+..++..+.. ....-...+-. .+ ..+.......+|+.+||.+.+|
T Consensus 87 ~~rlF~~lTVlENv~va~~~~~~---~~~~l~~~~~~--------~~-----------e~~~~e~A~~~Le~vgL~~~a~ 144 (250)
T COG0411 87 ITRLFPGLTVLENVAVGAHARLG---LSGLLGRPRAR--------KE-----------EREARERARELLEFVGLGELAD 144 (250)
T ss_pred cccccCCCcHHHHHHHHhhhhhh---hhhhhccccch--------hh-----------HHHHHHHHHHHHHHcCCchhhc
Confidence 99999999999999988664421 00000000000 00 0111223466899999999999
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+..|+ ||+|||||+.|||||+++|++|+||||.+||.+..+.++.+.++++.+. ++++|+.+-|++.-++++||
T Consensus 145 ~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~-~g~tillIEHdM~~Vm~l~d 218 (250)
T COG0411 145 RPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR-GGVTILLIEHDMKLVMGLAD 218 (250)
T ss_pred chhhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEEeccHHHhhhcc
Confidence 99999 9999999999999999999999999999999999999999999999874 45777788999999999999
Q ss_pred EEEEEcCCeEEEEcChhhHHH
Q 000506 412 NIILLSEGQIVYQGPREKVLE 432 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~~ 432 (1458)
||+||+.|+++.+|+++++.+
T Consensus 219 ri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 219 RIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred EEEeccCCcCcccCCHHHHhc
Confidence 999999999999999999864
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=345.61 Aligned_cols=212 Identities=24% Similarity=0.351 Sum_probs=180.7
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 4677777663 2469999999999999999999999999999999999876 478999999987532
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000506 937 A---T-FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQ 1012 (1458)
Q Consensus 937 ~---~-~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1012 (1458)
. . .++.++|++|++.+++.+||+|++.+....+. ...++..+.++++++.+++.+..++.+ ..|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHH
Confidence 1 1 23569999999999999999999987643321 223344557889999999988777664 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCC
Q 000506 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1013 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~ 1092 (1458)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 216 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGT 216 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeC
Confidence 99999999999999999999999999999999999999999877999999999986 68889999999985 78888887
Q ss_pred C
Q 000506 1093 L 1093 (1458)
Q Consensus 1093 ~ 1093 (1458)
.
T Consensus 217 ~ 217 (232)
T cd03218 217 P 217 (232)
T ss_pred H
Confidence 5
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=357.61 Aligned_cols=213 Identities=24% Similarity=0.399 Sum_probs=185.8
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.+.++|+++.+. ++.+|+|+|+++++||++||+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~ 66 (301)
T TIGR03522 2 SIRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDV 66 (301)
T ss_pred EEEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEc
Confidence 367888887763 2469999999999999999999999999999999999876 4799999999876
Q ss_pred Cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000506 935 NQ--ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQ 1012 (1458)
Q Consensus 935 ~~--~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1012 (1458)
.. ...++.+||++|++.+++.+||.|++.+.+.++. .+.++..++++++++.+||.+..++.++ .|||||
T Consensus 67 ~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~ 138 (301)
T TIGR03522 67 LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGY 138 (301)
T ss_pred ccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHH
Confidence 43 2345689999999999999999999998765542 2334445678999999999988887754 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCC
Q 000506 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1013 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~ 1092 (1458)
|||++||+||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 139 ~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~ 215 (301)
T TIGR03522 139 RQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKK 215 (301)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999864 799999999986 68889999999985 79999998
Q ss_pred C
Q 000506 1093 L 1093 (1458)
Q Consensus 1093 ~ 1093 (1458)
.
T Consensus 216 ~ 216 (301)
T TIGR03522 216 L 216 (301)
T ss_pred H
Confidence 6
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=345.45 Aligned_cols=208 Identities=27% Similarity=0.369 Sum_probs=174.4
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc------ccceEEEecCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV------PQRTCAYISQNDLH 255 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~ 255 (1458)
.+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (235)
T cd03261 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGAL 88 (235)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCccc
Confidence 346999999999999999999999999999999999999987 999999999876432 24579999999999
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 335 (1458)
++.+||+||+.+..+...... +.+ ....++.+++.+||++..++.++
T Consensus 89 ~~~~tv~~~l~~~~~~~~~~~---------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 135 (235)
T cd03261 89 FDSLTVFENVAFPLREHTRLS---------EEE------------------------IREIVLEKLEAVGLRGAEDLYPA 135 (235)
T ss_pred CCCCcHHHHHHHHHhhccCCC---------HHH------------------------HHHHHHHHHHHcCCchhhcCChh
Confidence 999999999988643211000 000 01123557889999888888887
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEE
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~l 415 (1458)
+ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|+|++
T Consensus 136 ~-----LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~vsH~~~~~~~~~d~v~~ 209 (235)
T cd03261 136 E-----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELG-LTSIMVTHDLDTAFAIADRIAV 209 (235)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcC-cEEEEEecCHHHHHHhcCEEEE
Confidence 6 999999999999999999999999999999999999999999999876434 4566677888899999999999
Q ss_pred EcCCeEEEEcChhhHH
Q 000506 416 LSEGQIVYQGPREKVL 431 (1458)
Q Consensus 416 L~~G~iv~~G~~~~~~ 431 (1458)
|++|++++.|+++++.
T Consensus 210 l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 210 LYDGKIVAEGTPEELR 225 (235)
T ss_pred EECCeEEEecCHHHHc
Confidence 9999999999987753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=362.58 Aligned_cols=210 Identities=29% Similarity=0.444 Sum_probs=179.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-cceEEEecCCCCCCCCCCH
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEMTV 261 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 261 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|++.++|.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 46999999999999999999999999999999999999998 9999999998865433 3679999999999999999
Q ss_pred HHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCC
Q 000506 262 RETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRG 341 (1458)
Q Consensus 262 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 341 (1458)
+||+.|+.+....... ..+.+ ....++.+++.+||++..|+.+.+
T Consensus 92 ~eni~~~~~~~~~~~~------~~~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~~----- 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRER------PNAAA------------------------IKAKVTQLLEMVQLAHLADRYPAQ----- 136 (353)
T ss_pred HHHHHhhhhhcccccC------CCHHH------------------------HHHHHHHHHHHcCCchhhhCChhh-----
Confidence 9999997653210000 00000 011345689999999888888876
Q ss_pred CChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeE
Q 000506 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421 (1458)
Q Consensus 342 LSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~i 421 (1458)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+ .+++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g-~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELK-FTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999976434 5566788899999999999999999999
Q ss_pred EEEcChhhHH
Q 000506 422 VYQGPREKVL 431 (1458)
Q Consensus 422 v~~G~~~~~~ 431 (1458)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=365.22 Aligned_cols=206 Identities=26% Similarity=0.340 Sum_probs=179.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-cceEEEecCCCCCCCCCCH
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEMTV 261 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 261 (1458)
..+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.+|||+|++.+||++||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999998865443 5679999999999999999
Q ss_pred HHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCC
Q 000506 262 RETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRG 341 (1458)
Q Consensus 262 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 341 (1458)
.||+.|+.+.++... .+ ....++.+++.+||.+..|..+..
T Consensus 109 ~eNi~~~l~~~~~~~----------~~------------------------~~~~v~~~l~~l~L~~~~~~~~~~----- 149 (377)
T PRK11607 109 EQNIAFGLKQDKLPK----------AE------------------------IASRVNEMLGLVHMQEFAKRKPHQ----- 149 (377)
T ss_pred HHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhcCChhh-----
Confidence 999999765432110 00 011345688999999888888776
Q ss_pred CChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeE
Q 000506 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421 (1458)
Q Consensus 342 LSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~i 421 (1458)
|||||||||+|||||+.+|++|||||||++||..++.++.+.|+++.+..+ .+++.++|+.+++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG-VTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999999876555 5566678889999999999999999999
Q ss_pred EEEcChhhHH
Q 000506 422 VYQGPREKVL 431 (1458)
Q Consensus 422 v~~G~~~~~~ 431 (1458)
+..|+++++.
T Consensus 229 ~~~g~~~~~~ 238 (377)
T PRK11607 229 VQIGEPEEIY 238 (377)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=344.38 Aligned_cols=213 Identities=24% Similarity=0.314 Sum_probs=178.1
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCc-----CCCceeeEEEECC
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYTEGDISISG 931 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~-----~~~~~~G~i~i~g 931 (1458)
+++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|.. + +.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDG 66 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECC
Confidence 4677777652 246999999999999999999999999999999999987 4 5789999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD 1006 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1006 (1458)
++... ...++.+||++|++.++ .+||+||+.+....+. ....++.+++++++++.+++.+..+.... +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87532 23456799999999887 7999999988654331 11222245678899999999877665431 25
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +|||+++|+++ ++.+.||++++|++ |+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~ 217 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GR 217 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CE
Confidence 79999999999999999999999999999999999999999999999877 99999999986 57788999999985 78
Q ss_pred EEEeCCC
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~~~G~~ 1093 (1458)
+++.|+.
T Consensus 218 i~~~g~~ 224 (227)
T cd03260 218 LVEFGPT 224 (227)
T ss_pred EEEecCc
Confidence 9888875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=341.75 Aligned_cols=221 Identities=36% Similarity=0.629 Sum_probs=182.6
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCC-CceeeEEEECCeeC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYTEGDISISGYPK 934 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~-~~~~G~i~i~g~~~ 934 (1458)
+.|+|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 5678888776421 0135799999999999999999999999999999999998751 23789999999987
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHH-HHHHcCCCccccccccCCCCCCCCHHHH
Q 000506 935 NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDE-VMDLVELEPLTNAMVGLPGVDGLSTEQR 1013 (1458)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~-~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1013 (1458)
.....++.++|++|++.+++.+||+||+.+......+.....+.....+++ .++.+++.+..++.+ +.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHH
Confidence 554567789999999999999999999998765443222222223334555 899999987776654 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1014 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999999877999999999985468899999999985 7888765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=339.77 Aligned_cols=206 Identities=30% Similarity=0.431 Sum_probs=176.1
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 4677777653 2469999999999999999999999999999999999876 479999999987543
Q ss_pred -ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000506 937 -ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKR 1015 (1458)
Q Consensus 937 -~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1015 (1458)
...++.++|++|++.+++..||+|++.+....+. . .++.++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHH
Confidence 2345679999999998999999999988654321 1 1345788999999988777664 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1016 l~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999878999999999986 57778999999985 7887654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=314.78 Aligned_cols=200 Identities=27% Similarity=0.394 Sum_probs=177.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc------ccceEEEecCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV------PQRTCAYISQNDLHF 256 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 256 (1458)
.++|+|||+.|++||++.|+||||||||||||+|.+...|+ .|+|.+||+++.... .||+||+|+||.-+.
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 55999999999999999999999999999999999999998 999999999987653 268899999999999
Q ss_pred CCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccC
Q 000506 257 GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD 336 (1458)
Q Consensus 257 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 336 (1458)
++.||.||++|+.+..|...+ + .+..+..+|+..||.+.++..+-.
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~~-----~-----------------------------i~~rV~~~L~~VgL~~k~~~lP~~ 137 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPPR-----E-----------------------------IRRRVSEVLDLVGLKHKARALPSQ 137 (223)
T ss_pred ccchHhhhhhhhhhccCCCHH-----H-----------------------------HHHHHHHHHHHhccchhhhcCccc
Confidence 999999999999887654211 1 122456689999999999888776
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
|||||||||+||||++.+|++|+-||||-+||+.++.+|++.+.++.+ .+|+|++.+|+..-+..+-.+++.|
T Consensus 138 -----LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 138 -----LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred -----cCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEEEE
Confidence 999999999999999999999999999999999999999999999976 3577777889998898999999999
Q ss_pred cCCeEEEEcC
Q 000506 417 SEGQIVYQGP 426 (1458)
Q Consensus 417 ~~G~iv~~G~ 426 (1458)
++|+++.+..
T Consensus 211 ~~Grl~~d~~ 220 (223)
T COG2884 211 EDGRLVRDES 220 (223)
T ss_pred eCCEEEeccc
Confidence 9999987653
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=325.94 Aligned_cols=211 Identities=28% Similarity=0.384 Sum_probs=178.7
Q ss_pred cccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcccc----ceEEEecCCC
Q 000506 178 SKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ----RTCAYISQND 253 (1458)
Q Consensus 178 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d 253 (1458)
..+++.+||++||+++++||+++|+||||+||||||++|+|..++. +|+|.++|++++...++ .-++||||..
T Consensus 11 ~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR 87 (237)
T COG0410 11 AGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGR 87 (237)
T ss_pred ecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccc
Confidence 3456688999999999999999999999999999999999999987 99999999999887653 5699999999
Q ss_pred CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcC-Ccccccc
Q 000506 254 LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLG-LDICADT 332 (1458)
Q Consensus 254 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lg-L~~~~dt 332 (1458)
..||.|||+|||..++..+... +.. .. ..|.+.+.|= |.+.++.
T Consensus 88 ~iF~~LTVeENL~~g~~~~~~~-----------~~~------~~------------------~~e~v~~lFP~Lker~~~ 132 (237)
T COG0410 88 RIFPRLTVEENLLLGAYARRDK-----------EAQ------ER------------------DLEEVYELFPRLKERRNQ 132 (237)
T ss_pred cchhhCcHHHHHhhhhhccccc-----------ccc------cc------------------cHHHHHHHChhHHHHhcC
Confidence 9999999999999875432110 000 00 0223344432 5556677
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCE
Q 000506 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412 (1458)
Q Consensus 333 ~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 412 (1458)
+-|+ |||||||-++|||||+++|++|+|||||.||-|.-..+|.+.++++.+.. +.+|+.+.|+...+.+++||
T Consensus 133 ~aG~-----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~-g~tIlLVEQn~~~Al~iaDr 206 (237)
T COG0410 133 RAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEG-GMTILLVEQNARFALEIADR 206 (237)
T ss_pred cccC-----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcC-CcEEEEEeccHHHHHHhhCE
Confidence 7777 99999999999999999999999999999999999999999999998753 46788899999999999999
Q ss_pred EEEEcCCeEEEEcChhhHHH
Q 000506 413 IILLSEGQIVYQGPREKVLE 432 (1458)
Q Consensus 413 v~lL~~G~iv~~G~~~~~~~ 432 (1458)
.++|.+|++++.|+.+++..
T Consensus 207 ~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 207 GYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred EEEEeCCEEEEecCHHHHhc
Confidence 99999999999999998853
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=341.74 Aligned_cols=208 Identities=28% Similarity=0.421 Sum_probs=173.8
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~ 70 (218)
T cd03255 2 ELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISK 70 (218)
T ss_pred eEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhh
Confidence 567887766310 011469999999999999999999999999999999999876 478999999987643
Q ss_pred cc-------ccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000506 937 AT-------FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 937 ~~-------~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1009 (1458)
.. .++.++|++|++.+++.+||+|++.+....+. ....+.++.++++++.+||.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SELS 142 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcC
Confidence 11 24579999999999999999999998765432 223344567889999999988777654 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++ +.||++++|++ |+
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 9999999999999999999999999999999999999999999987 5899999999986 35 48999999986 44
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=347.05 Aligned_cols=216 Identities=29% Similarity=0.363 Sum_probs=178.8
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.+.. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccc
Confidence 46777766531 1469999999999999999999999999999999999876 478999999987643
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHhhhc-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000506 937 A------TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRL-----SSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGV 1005 (1458)
Q Consensus 937 ~------~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 1005 (1458)
. ..++.++|++|++.+++.+||+||+.+...... ......+...+.++++++.++|.+..++.+
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA----- 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----
Confidence 1 245679999999999999999999987532110 001112234456889999999987766654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1006 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
..||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~- 220 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD- 220 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 479999999999999999999999999999999999999999999999764 899999999986 57779999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|++++.|+.
T Consensus 221 G~i~~~~~~ 229 (241)
T cd03256 221 GRIVFDGPP 229 (241)
T ss_pred CEEEeecCH
Confidence 789988875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=343.74 Aligned_cols=217 Identities=26% Similarity=0.351 Sum_probs=182.4
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++..
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 4677887766310 001269999999999999999999999999999999999986 47899999999764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000506 936 QA------TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 936 ~~------~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1009 (1458)
.. ..++.++|++|++.+++.+|++||+.+....+. ...+...+.++++++.++|.+..+..+ ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 31 235679999999999999999999988654331 233444567889999999988777654 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1088 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~ 1088 (1458)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999775 899999999986 57788999999985 7899
Q ss_pred EeCCC
Q 000506 1089 YAGPL 1093 (1458)
Q Consensus 1089 ~~G~~ 1093 (1458)
+.|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 88874
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=356.46 Aligned_cols=207 Identities=28% Similarity=0.410 Sum_probs=178.1
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc--ccceEEEecCCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV--PQRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 259 (1458)
++++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.+||++|++.+++.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 356999999999999999999999999999999999999998 999999999875421 245799999999999999
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
||+||+.+.++..+... .+ ....++.+++.+||++..|+.+++
T Consensus 82 tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~--- 124 (302)
T TIGR01188 82 TGRENLEMMGRLYGLPK----------DE------------------------AEERAEELLELFELGEAADRPVGT--- 124 (302)
T ss_pred cHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCChhHhCCchhh---
Confidence 99999998765433110 00 011245689999999988988877
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCC
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G 419 (1458)
|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++. + ++|+.++|+.+++.++||+|++|++|
T Consensus 125 --LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g-~tvi~~sH~~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 125 --YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-G-VTILLTTHYMEEADKLCDRIAIIDHG 200 (302)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-C-CEEEEECCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999753 4 55666778889999999999999999
Q ss_pred eEEEEcChhhHHH
Q 000506 420 QIVYQGPREKVLE 432 (1458)
Q Consensus 420 ~iv~~G~~~~~~~ 432 (1458)
++++.|+++++.+
T Consensus 201 ~i~~~g~~~~l~~ 213 (302)
T TIGR01188 201 RIIAEGTPEELKR 213 (302)
T ss_pred EEEEECCHHHHHH
Confidence 9999999988754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=350.96 Aligned_cols=204 Identities=25% Similarity=0.320 Sum_probs=175.4
Q ss_pred cccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcc---c----ccceEEEEccCC
Q 000506 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA---T----FARVSGYCEQND 950 (1458)
Q Consensus 878 ~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~ 950 (1458)
.+.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 445679999999999999999999999999999999999876 4789999999876421 1 135799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000506 951 IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIF 1030 (1458)
Q Consensus 951 ~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~ill 1030 (1458)
.+++.+||+||+.+..... .....+..+.++++++.++|.+..++.++ .||||||||++||+||+.+|+||+
T Consensus 112 ~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred ccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999998865432 12234445678899999999887777654 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1031 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1031 LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999754 899999999986 57788999999985 788888875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=338.90 Aligned_cols=206 Identities=29% Similarity=0.400 Sum_probs=175.4
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 56788887662 12469999999999999999999999999999999999876 47899999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000506 936 QA------TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 936 ~~------~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1009 (1458)
.. .+++.++|++|++.+++.+||+|++.+....+. ...+..++.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 31 245679999999998999999999988754321 223344567889999999987766654 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999999877999999999986 577789999999863
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=340.22 Aligned_cols=213 Identities=27% Similarity=0.405 Sum_probs=180.2
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++. +++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (220)
T cd03263 2 QIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRT 68 (220)
T ss_pred EEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 56777776531 11469999999999999999999999999999999999876 479999999987643
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000506 937 --ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014 (1458)
Q Consensus 937 --~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1014 (1458)
..+++.++|++|++.+++..||+||+.+....+. .+.++..+.++++++.++|.+..++.+ ..|||||||
T Consensus 69 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 140 (220)
T cd03263 69 DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKR 140 (220)
T ss_pred chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHH
Confidence 2345679999999998889999999988654332 233344556889999999988777664 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1015 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
|++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|++++|++ |++++.|+.
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999999875 599999999986 57778999999985 788888875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=363.64 Aligned_cols=207 Identities=26% Similarity=0.402 Sum_probs=178.2
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-cceEEEecCCCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEMT 260 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 260 (1458)
.+++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|++.+++.+|
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~t 91 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLS 91 (369)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCC
Confidence 346999999999999999999999999999999999999998 9999999998865433 467999999999999999
Q ss_pred HHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCC
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 340 (1458)
|+||+.|+.+..+... .+ ....++.+++.+||++..|+.+++
T Consensus 92 v~eni~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~lgL~~~~~~~~~~---- 133 (369)
T PRK11000 92 VAENMSFGLKLAGAKK----------EE------------------------INQRVNQVAEVLQLAHLLDRKPKA---- 133 (369)
T ss_pred HHHHHHhHHhhcCCCH----------HH------------------------HHHHHHHHHHHcCChhhhcCChhh----
Confidence 9999998765332110 00 011245688999999888888876
Q ss_pred CCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCe
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 341 GLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~ 420 (1458)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+ ++++.++|+.+++.+++|+|++|++|+
T Consensus 134 -LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tvI~vTHd~~~~~~~~d~i~vl~~G~ 211 (369)
T PRK11000 134 -LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADKIVVLDAGR 211 (369)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhC-CEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999876434 456667788899999999999999999
Q ss_pred EEEEcChhhHH
Q 000506 421 IVYQGPREKVL 431 (1458)
Q Consensus 421 iv~~G~~~~~~ 431 (1458)
++..|+++++.
T Consensus 212 i~~~g~~~~i~ 222 (369)
T PRK11000 212 VAQVGKPLELY 222 (369)
T ss_pred EEEEcCHHHHH
Confidence 99999998874
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=340.45 Aligned_cols=217 Identities=26% Similarity=0.349 Sum_probs=181.1
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|++.
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 47889999877410 011469999999999999999999999999999999999876 4799999999876
Q ss_pred Cccc------c-cceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000506 935 NQAT------F-ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDG 1007 (1458)
Q Consensus 935 ~~~~------~-~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1007 (1458)
.... . ++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+||.+..++.+ ..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 4321 2 256999999998899999999999865432 1233444567899999999988776654 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1008 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|+++ ++ +.+|++++|.+ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~-~~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LA-KRMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999975 5899999999985 34 45689999985 78
Q ss_pred EEEeCCC
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~~~G~~ 1093 (1458)
++..|++
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9988875
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=338.62 Aligned_cols=192 Identities=30% Similarity=0.405 Sum_probs=164.8
Q ss_pred ceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcccccceEEEEccCCC-CCCCCCHH
Q 000506 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDI-HSPHVTVY 959 (1458)
Q Consensus 881 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~-~~~~lTV~ 959 (1458)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+......++.+||++|++. .+...||+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 469999999999999999999999999999999999876 479999999988644445567999999974 34567999
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000506 960 ESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039 (1458)
Q Consensus 960 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD 1039 (1458)
||+.+..... . . ..+.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754321 1 1 1245789999999998777765 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEE
Q 000506 1040 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1088 (1458)
Q Consensus 1040 ~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~ 1088 (1458)
+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999878999999999986 57778999999986 5653
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=343.20 Aligned_cols=214 Identities=23% Similarity=0.374 Sum_probs=182.2
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56788887663 2469999999999999999999999999999999999876 47899999998764
Q ss_pred c-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 936 Q-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 936 ~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
. ...++.++|++|++..++.+||+|++.+...... ....++..+.+.++++.+||.+..+..+ +.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 2345679999999998999999999987642111 2233445567889999999987777654 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEe
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~ 1090 (1458)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999986 57778999999985 789998
Q ss_pred CCC
Q 000506 1091 GPL 1093 (1458)
Q Consensus 1091 G~~ 1093 (1458)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 875
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=370.79 Aligned_cols=214 Identities=22% Similarity=0.441 Sum_probs=178.8
Q ss_pred ccccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCCC
Q 000506 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQND 253 (1458)
Q Consensus 177 ~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d 253 (1458)
++.+++.+||+|+|++|+|||.+||+|||||||||+.++|..+++|+ +|+|.+||+|+.+.++ |+.||+|.|+|
T Consensus 475 YP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEP 551 (716)
T KOG0058|consen 475 YPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEP 551 (716)
T ss_pred cCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccc
Confidence 35566788999999999999999999999999999999999999998 9999999999998765 58899999999
Q ss_pred CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccc
Q 000506 254 LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTM 333 (1458)
Q Consensus 254 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 333 (1458)
.+|.. ||+|||.|+... .+.+++..++.++. ..+.|. ++++..||.
T Consensus 552 vLFs~-sI~eNI~YG~~~-------------------------~t~e~i~~AAk~AN-----ah~FI~---~~p~gY~T~ 597 (716)
T KOG0058|consen 552 VLFSG-SIRENIAYGLDN-------------------------ATDEEIEAAAKMAN-----AHEFIT---NFPDGYNTV 597 (716)
T ss_pred eeecc-cHHHHHhcCCCC-------------------------CCHHHHHHHHHHhC-----hHHHHH---hCccccccc
Confidence 99976 999999997531 11122233333222 234443 589999999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEE
Q 000506 334 VGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413 (1458)
Q Consensus 334 vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v 413 (1458)
||+. ...||||||||++|||||+++|+||||||.||+||+.+...+.+.|.+..+ ++|+++ |.|. -.+.+.+|+|
T Consensus 598 VGEk-G~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlv-IAHR-LSTV~~Ad~I 672 (716)
T KOG0058|consen 598 VGEK-GSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLV-IAHR-LSTVRHADQI 672 (716)
T ss_pred cCCc-cccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEE-Eehh-hhHhhhccEE
Confidence 9983 223999999999999999999999999999999999999999999988765 456555 4443 4677899999
Q ss_pred EEEcCCeEEEEcChhhHHH
Q 000506 414 ILLSEGQIVYQGPREKVLE 432 (1458)
Q Consensus 414 ~lL~~G~iv~~G~~~~~~~ 432 (1458)
+++++|++++.|+.+|+++
T Consensus 673 vvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 673 VVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEEcCCeEEecccHHHHhh
Confidence 9999999999999999875
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=345.02 Aligned_cols=214 Identities=25% Similarity=0.361 Sum_probs=182.0
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 67888887763 2459999999999999999999999999999999999876 47899999998754
Q ss_pred c-----------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000506 936 Q-----------ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPG 1004 (1458)
Q Consensus 936 ~-----------~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 1004 (1458)
. ...++.++|++|++.+++..||+||+.++..... ....++..+.++++++.+||.+..++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 142 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP---- 142 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh----
Confidence 2 1235679999999999999999999987543211 1233445567889999999987766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++.+.+|++++|++
T Consensus 143 -~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 143 -RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred -hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 479999999999999999999999999999999999999999999999877999999999986 57788999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 789888874
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=351.11 Aligned_cols=219 Identities=22% Similarity=0.322 Sum_probs=182.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13637 2 SIKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 367889988774210 012469999999999999999999999999999999999876 4799999999986
Q ss_pred Cc-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCC
Q 000506 935 NQ-----ATFARVSGYCEQNDI-HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE--PLTNAMVGLPGVD 1006 (1458)
Q Consensus 935 ~~-----~~~~~~~gyv~Q~~~-~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~ 1006 (1458)
.. ...++.+|||+|++. .+...||+|++.|..... ..+.++..++++++++.+||. +..++.+ +
T Consensus 72 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~ 143 (287)
T PRK13637 72 TDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----F 143 (287)
T ss_pred CCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----c
Confidence 43 134578999999974 334579999999865432 234555667789999999997 5566553 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
.||||||||++||+||+.+|++|+|||||+|||+.++..++++|++++++ |+|||++||+++ ++.+.||++++|++ |
T Consensus 144 ~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G 221 (287)
T PRK13637 144 ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-G 221 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999865 899999999986 57788999999985 7
Q ss_pred EEEEeCCC
Q 000506 1086 QVIYAGPL 1093 (1458)
Q Consensus 1086 ~~~~~G~~ 1093 (1458)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (287)
T PRK13637 222 KCELQGTP 229 (287)
T ss_pred EEEEECCH
Confidence 89999875
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=357.51 Aligned_cols=208 Identities=29% Similarity=0.394 Sum_probs=178.4
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc--ccceEEEecCCCCCCCC
Q 000506 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV--PQRTCAYISQNDLHFGE 258 (1458)
Q Consensus 181 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~ 258 (1458)
+++.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.+||++|++.+++.
T Consensus 52 ~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~ 128 (340)
T PRK13536 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLE 128 (340)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCC
Confidence 3456999999999999999999999999999999999999998 999999999875432 34679999999999999
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
+||+||+.|.+...+... .+ .....+.+++.+||++..++.+++
T Consensus 129 ~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~ll~~~~L~~~~~~~~~~-- 172 (340)
T PRK13536 129 FTVRENLLVFGRYFGMST----------RE------------------------IEAVIPSLLEFARLESKADARVSD-- 172 (340)
T ss_pred CcHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhCCChhh--
Confidence 999999987554332110 00 011234578899999999998887
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++++ .+ ++|+.++|+.+++.++||+|++|++
T Consensus 173 ---LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g-~tilisSH~l~e~~~~~d~i~il~~ 247 (340)
T PRK13536 173 ---LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RG-KTILLTTHFMEEAERLCDRLCVLEA 247 (340)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC-CEEEEECCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999975 34 5666677889999999999999999
Q ss_pred CeEEEEcChhhHHH
Q 000506 419 GQIVYQGPREKVLE 432 (1458)
Q Consensus 419 G~iv~~G~~~~~~~ 432 (1458)
|+++++|+++++.+
T Consensus 248 G~i~~~g~~~~l~~ 261 (340)
T PRK13536 248 GRKIAEGRPHALID 261 (340)
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999998864
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=325.09 Aligned_cols=213 Identities=24% Similarity=0.401 Sum_probs=192.8
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
+++++|+.++ +.+.+++|+||.++||++++++|+|||||||++++|.|... +++|+|.++|.+.+
T Consensus 3 L~ie~vtK~F-------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~ 67 (300)
T COG4152 3 LEIEGVTKSF-------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLS 67 (300)
T ss_pred eEEecchhcc-------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchh
Confidence 5666666544 46789999999999999999999999999999999999987 58999999999986
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000506 936 QATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKR 1015 (1458)
Q Consensus 936 ~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1015 (1458)
.. .+.+|||+|.+..+++.+||.|.|.|-|.|+ .++.++.++.++..|+.+++......++ +.||.|++|+
T Consensus 68 ~~-~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQK 138 (300)
T COG4152 68 QE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQK 138 (300)
T ss_pred hh-hhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHH
Confidence 53 4567999999999999999999999999887 4667888888999999999998887765 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCC
Q 000506 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1016 l~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~ 1094 (1458)
+.+-.+++++|++++||||+|||||.+...+-+.+.+++++|.|||+++|++. .+.++||++++|++ |+.|..|++.
T Consensus 139 IQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~ 215 (300)
T COG4152 139 IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVE 215 (300)
T ss_pred HHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHH
Confidence 99999999999999999999999999999999999999999999999999987 68999999999986 7888889863
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=338.10 Aligned_cols=206 Identities=25% Similarity=0.363 Sum_probs=174.9
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
.++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 4677777663 12469999999999999999999999999999999999876 478999999987642
Q ss_pred c------cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 937 A------TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 937 ~------~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
. ..++.++|++|++.+++.+||+||+.+....+. ...++.++.++++++.+++.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1 245679999999999999999999988754331 233444567889999999988777654 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |+
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999999999999999999999999999777999999999986 56778999999985 54
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=343.79 Aligned_cols=212 Identities=28% Similarity=0.399 Sum_probs=180.5
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 56788887663 2469999999999999999999999999999999999876 47899999998764
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000506 936 QATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKR 1015 (1458)
Q Consensus 936 ~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1015 (1458)
. ..+.+||++|++.+++..||+||+.+....+ ....++..+.++++++.++|.+..++.+ ..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 3 2345899999999889999999998765432 1233444567899999999987776654 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEEEEec-CcEEEEeCCC
Q 000506 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKR-GGQVIYAGPL 1093 (1458)
Q Consensus 1016 l~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq~s~~i~~~~D~vlll~~-gG~~~~~G~~ 1093 (1458)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++.+.||++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999986 57788999999984 5899888764
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=327.71 Aligned_cols=207 Identities=27% Similarity=0.396 Sum_probs=182.5
Q ss_pred ccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcc----cccceEEEEccCCCCCC
Q 000506 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA----TFARVSGYCEQNDIHSP 954 (1458)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~ 954 (1458)
+...+|+|||+++++||++||+||||||||||+|+|+|..+ +++|+|.++|+++... ..+..++--+|...+|+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 46789999999999999999999999999999999999987 4899999999987542 23456888999999999
Q ss_pred CCCHHHHHHHHHhhhc--------CCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000506 955 HVTVYESLLFSAWLRL--------SSD-IDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVAN 1025 (1458)
Q Consensus 955 ~lTV~e~l~f~~~lr~--------~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~ 1025 (1458)
.+||.||+..++..+. +.. ...++..+++.++|+.+||.+.+|...| +||+||||||.|||||+.+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 9999999998765331 111 1245556788999999999999999876 6999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCC
Q 000506 1026 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1026 p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~ 1094 (1458)
|++|+||||.+||.+..+..+.+.|+++.++ |.||+++-|+++ -++.+||||+||+. |+++..|++.
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHH
Confidence 9999999999999999999999999999874 799999999998 48999999999986 7999999974
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=343.11 Aligned_cols=213 Identities=27% Similarity=0.399 Sum_probs=180.2
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++. .+.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCc
Confidence 46777776531 1459999999999999999999999999999999999876 478999999987542
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCHH
Q 000506 937 ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP--LTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 937 ---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSgG 1011 (1458)
...++.++|++|++.+++.+||+||+.+...++ ..+.++..+.++++++.+++.+ ..++.+ +.||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHH
Confidence 234567999999999999999999998865432 1233444567889999999985 555543 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEe
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~ 1090 (1458)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQV 217 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999765 899999999986 57788999999985 788888
Q ss_pred CCC
Q 000506 1091 GPL 1093 (1458)
Q Consensus 1091 G~~ 1093 (1458)
|+.
T Consensus 218 ~~~ 220 (242)
T cd03295 218 GTP 220 (242)
T ss_pred cCH
Confidence 875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=345.52 Aligned_cols=218 Identities=25% Similarity=0.319 Sum_probs=179.4
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 46778876652 02459999999999999999999999999999999999876 47899999998754
Q ss_pred c------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhh-----cCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000506 936 Q------ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLR-----LSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPG 1004 (1458)
Q Consensus 936 ~------~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr-----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 1004 (1458)
. ..+++.+||++|++.+++.+||+||+.+..... .......++.+++++++++.+++.+..+..+
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 143 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---- 143 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 2 124567999999999999999999998643210 0001112334567889999999987776654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEec
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKR 1083 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~ 1083 (1458)
..||||||||++||+||+.+|++|+|||||+|||+.+...+.+.|++++++ |+|||+++|+++ ++.+.||++++|++
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 144 -DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 479999999999999999999999999999999999999999999998764 899999999986 57788999999985
Q ss_pred CcEEEEeCCCC
Q 000506 1084 GGQVIYAGPLG 1094 (1458)
Q Consensus 1084 gG~~~~~G~~~ 1094 (1458)
|++++.|+..
T Consensus 222 -G~i~~~~~~~ 231 (243)
T TIGR02315 222 -GEIVFDGAPS 231 (243)
T ss_pred -CEEEecCCHH
Confidence 7888888753
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=326.41 Aligned_cols=204 Identities=25% Similarity=0.306 Sum_probs=175.5
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc----ccceEEEecCCC--CCCC
Q 000506 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV----PQRTCAYISQND--LHFG 257 (1458)
Q Consensus 184 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d--~~~~ 257 (1458)
++|+|||++|.+||.++|+|+||||||||.++|+|+.+|+ +|+|.++|.+..... ..+.+-+|+||+ .+-|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 5999999999999999999999999999999999999998 999999998776542 356799999997 4789
Q ss_pred CCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc-cccccccC
Q 000506 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI-CADTMVGD 336 (1458)
Q Consensus 258 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt~vg~ 336 (1458)
..||++.|.-..+..+.+. . +..+..+++.+||+. .++..+-+
T Consensus 98 ~~tv~~~l~Epl~~~~~~~----------~--------------------------~~~i~~~L~~VgL~~~~l~R~P~e 141 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSK----------S--------------------------QQRIAELLDQVGLPPSFLDRRPHE 141 (252)
T ss_pred chhHHHHHhhhhccCCccH----------H--------------------------HHHHHHHHHHcCCCHHHHhcCchh
Confidence 9999999976655432211 0 111455889999975 55555544
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
|||||||||+|||||+.+|++|++|||||+||++.+.+|++.|.++.+..+ .+.+.++|+..-+..+||||++|
T Consensus 142 -----LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~-lt~l~IsHdl~~v~~~cdRi~Vm 215 (252)
T COG1124 142 -----LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERG-LTYLFISHDLALVEHMCDRIAVM 215 (252)
T ss_pred -----cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcC-ceEEEEeCcHHHHHHHhhheeee
Confidence 999999999999999999999999999999999999999999999988654 56677889999999999999999
Q ss_pred cCCeEEEEcChhhHHH
Q 000506 417 SEGQIVYQGPREKVLE 432 (1458)
Q Consensus 417 ~~G~iv~~G~~~~~~~ 432 (1458)
++|++++.++.+++.+
T Consensus 216 ~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 216 DNGQIVEIGPTEELLS 231 (252)
T ss_pred eCCeEEEeechhhhhc
Confidence 9999999999999864
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=316.60 Aligned_cols=226 Identities=26% Similarity=0.399 Sum_probs=189.5
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++.+|++|++. .+++|++||++++|||++||+|||||||||||++|+|... +.+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 46788998874 4679999999999999999999999999999999999876 47899999999875
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000506 936 Q---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQ 1012 (1458)
Q Consensus 936 ~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1012 (1458)
. ....+..+.+||+-.+....||+|-+.++..-.. ..-...+..+.++++|...++.+++.+.. ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~-~g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR-SGREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccc-cCCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 4 3456788999999998888999999999753211 11122244556889999999999887653 4799999
Q ss_pred HHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1013 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1013 rqRl~ia~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
||||.+||.|++ ++++||||||||.||...+..++++.|+++++|..|+|+.||.+. ...++||+++|++ |+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-Ce
Confidence 999999999975 456999999999999999999999999999999999999999984 6788999999985 89
Q ss_pred EEEeCCCCc--chHHHHHHH
Q 000506 1087 VIYAGPLGR--QSQKLVEYF 1104 (1458)
Q Consensus 1087 ~~~~G~~~~--~~~~~~~~f 1104 (1458)
++..|++.+ ..+.+...|
T Consensus 219 v~a~g~p~~vlt~Etl~~vy 238 (259)
T COG4559 219 VIASGSPQDVLTDETLERVY 238 (259)
T ss_pred EeecCCHHHhcCHHHHHHHh
Confidence 999998754 334455555
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=339.58 Aligned_cols=210 Identities=27% Similarity=0.420 Sum_probs=176.1
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (222)
T cd03224 2 EVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITG 66 (222)
T ss_pred EEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCC
Confidence 4677776552 2469999999999999999999999999999999999976 478999999987643
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCCHH
Q 000506 937 A---T-FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV-ELEPLTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 937 ~---~-~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LSgG 1011 (1458)
. . .++.++|++|++.+++.+|++||+.+...... ..+..+.++++++.+ ++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 136 (222)
T cd03224 67 LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSGG 136 (222)
T ss_pred CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHH
Confidence 2 1 24569999999999999999999988654321 122344567788887 4766666554 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 137 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 214 (222)
T cd03224 137 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEG 214 (222)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeC
Confidence 999999999999999999999999999999999999999999877899999999986 57788999999985 7898888
Q ss_pred CC
Q 000506 1092 PL 1093 (1458)
Q Consensus 1092 ~~ 1093 (1458)
+.
T Consensus 215 ~~ 216 (222)
T cd03224 215 TA 216 (222)
T ss_pred CH
Confidence 74
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=347.78 Aligned_cols=215 Identities=25% Similarity=0.335 Sum_probs=182.4
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++. ...+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYKD------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeCC------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 3788999887631 2359999999999999999999999999999999999876 4789999999886
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 935 NQ---ATFARVSGYCEQNDI-HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~-~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
.. ...++.+||++|++. .++..||.|++.|..... ..+.++.++.++++++.++|.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 233567999999973 445689999998864321 2334444567899999999988777765 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEe
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~ 1090 (1458)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 56788999999985 789999
Q ss_pred CCC
Q 000506 1091 GPL 1093 (1458)
Q Consensus 1091 G~~ 1093 (1458)
|+.
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 885
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=346.14 Aligned_cols=215 Identities=20% Similarity=0.309 Sum_probs=182.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+. ++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 478899988763 2469999999999999999999999999999999999876 4789999999876
Q ss_pred Ccc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000506 935 NQA------TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGL 1008 (1458)
Q Consensus 935 ~~~------~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 1008 (1458)
... ..++.++|++|+..+++.+||.||+.+...... ..+.++.++.+.++++.+++.+..+..+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 135679999999999999999999987643211 1233344556788999999988777764 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEE
Q 000506 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087 (1458)
Q Consensus 1009 SgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~ 1087 (1458)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999765 899999999976 57788999999985 789
Q ss_pred EEeCCC
Q 000506 1088 IYAGPL 1093 (1458)
Q Consensus 1088 ~~~G~~ 1093 (1458)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 998875
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=372.20 Aligned_cols=215 Identities=27% Similarity=0.424 Sum_probs=183.2
Q ss_pred eEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCee
Q 000506 854 LSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP 933 (1458)
Q Consensus 854 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1458)
-.++|+||+|.|+.. ++.++|+|+||+|+|||.|||+||||+||||+.+.|-.... +.+|+|.+||+|
T Consensus 464 G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~ 531 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVP 531 (716)
T ss_pred ceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCee
Confidence 479999999999754 35689999999999999999999999999999999999877 589999999999
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCCCC
Q 000506 934 KNQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKM-----FVDEVMDLVELEPLTNAMVGLPGV 1005 (1458)
Q Consensus 934 ~~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~-----~v~~~l~~l~L~~~~~~~vg~~~~ 1005 (1458)
+.+ ..+++++|+|.|+|.+|. -||+||+.|+.. ..+.++... -+.+.+ .++.+-.||.||..|.
T Consensus 532 i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGEkG~ 603 (716)
T KOG0058|consen 532 ISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGEKGS 603 (716)
T ss_pred hhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHH--HhCccccccccCCccc
Confidence 754 457899999999999986 599999999753 233333221 122222 3566778999997654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1006 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
.||||||||++|||||++||+||||||.||+||+++...|.++|.++.+ ++|||++.|+.| ..+.+|+|+++++ |
T Consensus 604 -qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~-G 678 (716)
T KOG0058|consen 604 -QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK-G 678 (716)
T ss_pred -cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC-C
Confidence 7999999999999999999999999999999999999999999998765 599999999875 6788999999986 7
Q ss_pred EEEEeCCC
Q 000506 1086 QVIYAGPL 1093 (1458)
Q Consensus 1086 ~~~~~G~~ 1093 (1458)
++++.|.-
T Consensus 679 ~V~E~G~h 686 (716)
T KOG0058|consen 679 RVVEMGTH 686 (716)
T ss_pred eEEecccH
Confidence 99999964
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=323.72 Aligned_cols=214 Identities=25% Similarity=0.395 Sum_probs=180.8
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|++..| ++.++|++||+++++||+++|+|+|||||||||++|+|..+ +.+|+|.++|++++
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecC
Confidence 5677777655 35689999999999999999999999999999999999987 36899999999875
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCH
Q 000506 936 QA----TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVE-LEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 936 ~~----~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSg 1010 (1458)
.. ..++-++||||....||.+||+|||..++..+.. ++..+..++++.+.+- |.+.++...| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 42 3456799999999999999999999988765432 1112222677777774 5666676655 6999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
||||-++|||||+++|++|+|||||.||-|.-..+|.+.|++++++ |.||+++-+... ...+.+||.++|.+ |++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999976 779999988765 47789999999985 89999
Q ss_pred eCCCCc
Q 000506 1090 AGPLGR 1095 (1458)
Q Consensus 1090 ~G~~~~ 1095 (1458)
.|+..+
T Consensus 218 ~G~~~e 223 (237)
T COG0410 218 SGTAAE 223 (237)
T ss_pred ecCHHH
Confidence 999643
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=341.75 Aligned_cols=215 Identities=27% Similarity=0.400 Sum_probs=182.3
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (241)
T PRK10895 3 TLTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDI 67 (241)
T ss_pred eEEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 367788887663 2469999999999999999999999999999999999876 4789999999876
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 935 NQA----TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 935 ~~~----~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
... ..++.++|++|++.+++.+||.||+.+...++. ..+.++.+..++++++.+++.+..+..+ +.|||
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 140 (241)
T PRK10895 68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSG 140 (241)
T ss_pred CCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCH
Confidence 431 234679999999998999999999987643321 1233444567889999999987766554 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEe
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~ 1090 (1458)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.+++++++|+|||+++|++. ++.+.+|++++|++ |++++.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~ 218 (241)
T PRK10895 141 GERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAH 218 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEee
Confidence 9999999999999999999999999999999999999999999877999999999985 58889999999985 789988
Q ss_pred CCC
Q 000506 1091 GPL 1093 (1458)
Q Consensus 1091 G~~ 1093 (1458)
|+.
T Consensus 219 ~~~ 221 (241)
T PRK10895 219 GTP 221 (241)
T ss_pred CCH
Confidence 875
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=350.54 Aligned_cols=219 Identities=21% Similarity=0.312 Sum_probs=182.3
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.+.++|+++.++... .....+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~ 71 (305)
T PRK13651 2 QIKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDE 71 (305)
T ss_pred EEEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceec
Confidence 368899998874210 012359999999999999999999999999999999999886 4689999998753
Q ss_pred C---------------------------cccccceEEEEccCC-CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 000506 935 N---------------------------QATFARVSGYCEQND-IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEV 986 (1458)
Q Consensus 935 ~---------------------------~~~~~~~~gyv~Q~~-~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~ 986 (1458)
. ....++.+|||+|++ ..+...||+|++.|+.... ..+.++..++++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~ 148 (305)
T PRK13651 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKY 148 (305)
T ss_pred ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHH
Confidence 1 123456799999986 3344579999999875432 34455566788999
Q ss_pred HHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 000506 987 MDLVELE-PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065 (1458)
Q Consensus 987 l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H 1065 (1458)
++.+||. +..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|
T Consensus 149 l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtH 223 (305)
T PRK13651 149 IELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223 (305)
T ss_pred HHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEee
Confidence 9999996 5666654 479999999999999999999999999999999999999999999999877999999999
Q ss_pred CccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1066 QPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1066 q~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
++. ++.+.+|++++|++ |++++.|+.
T Consensus 224 d~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 224 DLD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred CHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 976 57789999999985 789999986
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=349.66 Aligned_cols=218 Identities=25% Similarity=0.325 Sum_probs=181.5
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67899998884210 012459999999999999999999999999999999999876 47899999999763
Q ss_pred c-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000506 936 Q-------ATFARVSGYCEQNDI-HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVD 1006 (1458)
Q Consensus 936 ~-------~~~~~~~gyv~Q~~~-~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 1006 (1458)
. ...++.+|||+|++. .+...||+||+.|+.... ..+.++.+++++++++.++|. +..++.+ .
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP-----F 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----c
Confidence 1 234567999999863 233579999999875422 234445556789999999997 5566654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
.|||||||||+||++|+.+|++|+|||||+|||+.++..++++|++++++ |.|||+++|+++ ++.+.+||+++|++ |
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-G 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999765 999999999986 57888999999985 7
Q ss_pred EEEEeCCC
Q 000506 1086 QVIYAGPL 1093 (1458)
Q Consensus 1086 ~~~~~G~~ 1093 (1458)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 99999975
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=335.94 Aligned_cols=209 Identities=26% Similarity=0.333 Sum_probs=176.7
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56788887762 12469999999999999999999999999999999999876 47899999998753
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000506 936 QA------TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 936 ~~------~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1009 (1458)
.. .+++.++|++|++.+++..||+|++.+....+ ....++..+.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 21 14567999999998888999999998865432 2233444556889999999988776654 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1088 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~ 1088 (1458)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 99999999999999999999999999999999999999999999877899999999986 57778999999986 6653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=334.90 Aligned_cols=208 Identities=33% Similarity=0.484 Sum_probs=176.1
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.+. ++.+|+|+|+++++| +++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcccc
Confidence 5677777653 246999999999999 999999999999999999999876 478999999987543
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000506 937 --ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014 (1458)
Q Consensus 937 --~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1014 (1458)
...++.++|++|++.+++.+||+|++.+....+. .+.++..+.++++++.+++.+..++.+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHH
Confidence 2345779999999999999999999988655431 223334566889999999988777664 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1015 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999976 599999999986 46678999999985 6877654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=337.48 Aligned_cols=217 Identities=25% Similarity=0.305 Sum_probs=173.8
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
+.++|+++.+... .....+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5678888776310 001269999999999999999999999999999999999876 47899999998764
Q ss_pred c------ccccceEEEEccCC--CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000506 936 Q------ATFARVSGYCEQND--IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVD 1006 (1458)
Q Consensus 936 ~------~~~~~~~gyv~Q~~--~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 1006 (1458)
. ..+++.++|++|++ .+.+.+||+||+.+........ ...+.....++++++.+++. +..+..+ .
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRYP-----H 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCCc-----h
Confidence 3 23456899999998 4567899999998865433211 11111122236889999995 4555554 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999876 899999999986 56678999999985 7
Q ss_pred EEEEeC
Q 000506 1086 QVIYAG 1091 (1458)
Q Consensus 1086 ~~~~~G 1091 (1458)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 877654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=334.93 Aligned_cols=206 Identities=24% Similarity=0.365 Sum_probs=174.9
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++ .+.+|+++|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 4677777663 2469999999999999999999999999999999999876 478999999987632
Q ss_pred -----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000506 937 -----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 937 -----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1011 (1458)
...++.++|++|++.+++.+|++||+.+...... ....++..+.++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 2345789999999999999999999988643111 2233444567889999999988777664 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 999999999999999999999999999999999999999999877999999999986 57788999999986 54
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=335.03 Aligned_cols=200 Identities=32% Similarity=0.462 Sum_probs=168.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-cceEEEecCCCCCCCCCCH
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEMTV 261 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 261 (1458)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 56999999999999999999999999999999999999987 9999999998764322 4579999999989999999
Q ss_pred HHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCC
Q 000506 262 RETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRG 341 (1458)
Q Consensus 262 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 341 (1458)
+||+.++....+.. +.+ ....++.+++.+||++..++.+++
T Consensus 90 ~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (213)
T cd03259 90 AENIAFGLKLRGVP----------KAE------------------------IRARVRELLELVGLEGLLNRYPHE----- 130 (213)
T ss_pred HHHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhhcChhh-----
Confidence 99998764322110 000 011234578899999888888877
Q ss_pred CChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeE
Q 000506 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421 (1458)
Q Consensus 342 LSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~i 421 (1458)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELG-ITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876434 4566677888899999999999999999
Q ss_pred EEEc
Q 000506 422 VYQG 425 (1458)
Q Consensus 422 v~~G 425 (1458)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=337.72 Aligned_cols=212 Identities=29% Similarity=0.436 Sum_probs=178.5
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 46778877663 2469999999999999999999999999999999999876 47899999998754
Q ss_pred cc--cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000506 936 QA--TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQR 1013 (1458)
Q Consensus 936 ~~--~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1013 (1458)
.. ...+.++|++|++.+++.+||+|++.+....+ ....++..+.++++++.+||.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 21 22357999999998888999999998765432 2233444567889999999988777664 37999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCC
Q 000506 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1014 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~ 1092 (1458)
||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|+++ ++ +.+|++++|++ |++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999975 5899999999986 35 45999999985 78888887
Q ss_pred C
Q 000506 1093 L 1093 (1458)
Q Consensus 1093 ~ 1093 (1458)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 4
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=336.22 Aligned_cols=206 Identities=29% Similarity=0.404 Sum_probs=174.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc--ccceEEEecCCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV--PQRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 259 (1458)
++++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDEL 88 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccC
Confidence 356999999999999999999999999999999999999988 999999998765321 235799999999999999
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
||+||+.+..+..+... .+ ....++.+++.+||++..++.+++
T Consensus 89 tv~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~--- 131 (220)
T cd03265 89 TGWENLYIHARLYGVPG----------AE------------------------RRERIDELLDFVGLLEAADRLVKT--- 131 (220)
T ss_pred cHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCHHHhhCChhh---
Confidence 99999988654322100 00 011245578999999888888877
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCC
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G 419 (1458)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++..+ ++++.++|+.+++.+++|++++|.+|
T Consensus 132 --LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~~tH~~~~~~~~~d~i~~l~~G 208 (220)
T cd03265 132 --YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG-MTILLTTHYMEEAEQLCDRVAIIDHG 208 (220)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999876434 45666788889999999999999999
Q ss_pred eEEEEcChhhH
Q 000506 420 QIVYQGPREKV 430 (1458)
Q Consensus 420 ~iv~~G~~~~~ 430 (1458)
+++..|+++++
T Consensus 209 ~i~~~~~~~~~ 219 (220)
T cd03265 209 RIIAEGTPEEL 219 (220)
T ss_pred EEEEeCChHHc
Confidence 99999987653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=341.60 Aligned_cols=215 Identities=21% Similarity=0.299 Sum_probs=181.8
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 378899988763 2469999999999999999999999999999999999876 4789999999875
Q ss_pred Cc----------------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc-c
Q 000506 935 NQ----------------ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT-N 997 (1458)
Q Consensus 935 ~~----------------~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-~ 997 (1458)
.. ..+++.++|++|++.+++.+||+||+.++..... .....+.++++.++++.+|+.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 1345679999999999999999999987542111 123444566788999999998753 4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhce
Q 000506 998 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1458)
Q Consensus 998 ~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~ 1077 (1458)
.. +..||||||||++||+||+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|+++ ++.+.||+
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 44 3579999999999999999999999999999999999999999999999877999999999986 57778999
Q ss_pred EEEEecCcEEEEeCCC
Q 000506 1078 LLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1078 vlll~~gG~~~~~G~~ 1093 (1458)
+++|++ |++++.|+.
T Consensus 222 i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 222 VIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999986 788888875
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=346.44 Aligned_cols=216 Identities=27% Similarity=0.397 Sum_probs=183.2
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++ +++.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 588999998873 12459999999999999999999999999999999999876 4789999999986
Q ss_pred Cc-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000506 935 NQ-----ATFARVSGYCEQNDI-HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGL 1008 (1458)
Q Consensus 935 ~~-----~~~~~~~gyv~Q~~~-~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 1008 (1458)
.. ..+++.+||++|++. .+...||+|++.+..... ..+.++..+.++++++.++|.+..++.+ +.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccC
Confidence 31 234578999999974 334679999998864322 2344455567899999999988777764 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEE
Q 000506 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087 (1458)
Q Consensus 1009 SgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~ 1087 (1458)
|||||||++||+||+.+|++|+|||||+|||+.++..++++|++++++ |+|||+++|+++ ++.+.||++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 899999999986 46678999999986 789
Q ss_pred EEeCCCC
Q 000506 1088 IYAGPLG 1094 (1458)
Q Consensus 1088 ~~~G~~~ 1094 (1458)
++.|+..
T Consensus 221 ~~~g~~~ 227 (283)
T PRK13636 221 ILQGNPK 227 (283)
T ss_pred EEeCCHH
Confidence 9999863
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=339.59 Aligned_cols=214 Identities=24% Similarity=0.329 Sum_probs=178.8
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECCe
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISGY 932 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~ 932 (1458)
++++|+++.+. +..+|+|+|++|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|+
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56788887763 235899999999999999999999999999999999987631 12899999999
Q ss_pred eCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 000506 933 PKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE----PLTNAMVGLP 1003 (1458)
Q Consensus 933 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~~ 1003 (1458)
+... ...++.++|++|++.+++ .||+||+.+....+. ..+.++..+.++++++.+||. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 234567999999998888 999999988654331 123344456788999999997 555544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEec
Q 000506 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1083 (1458)
Q Consensus 1004 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~ 1083 (1458)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|++. ++.+.+|++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999876 489999999986 57788999999985
Q ss_pred CcEEEEeCCC
Q 000506 1084 GGQVIYAGPL 1093 (1458)
Q Consensus 1084 gG~~~~~G~~ 1093 (1458)
|++++.|+.
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 788888875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=341.19 Aligned_cols=206 Identities=22% Similarity=0.297 Sum_probs=178.0
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 488999998773 2469999999999999999999999999999999999876 4789999999865
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000506 935 NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014 (1458)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1014 (1458)
. ..++.++|++|++.+++.+||+||+.+... . ..++.++++++.++|.+..+..+ ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 345679999999998898999999987421 0 12345788999999988776654 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1015 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999986 57788999999985 788888764
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=350.18 Aligned_cols=218 Identities=23% Similarity=0.342 Sum_probs=181.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 589999999884210 012459999999999999999999999999999999999987 4789999999875
Q ss_pred Cc-------------------ccccceEEEEccCC--CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC
Q 000506 935 NQ-------------------ATFARVSGYCEQND--IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE 993 (1458)
Q Consensus 935 ~~-------------------~~~~~~~gyv~Q~~--~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~ 993 (1458)
.. ..+++.+|||+|++ .+++ .||+||+.|+.... ..+.++..++++++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13467899999987 3454 59999998864321 234445556788999999996
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHH
Q 000506 994 -PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1072 (1458)
Q Consensus 994 -~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~ 1072 (1458)
+..++. +..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455554 3479999999999999999999999999999999999999999999999877999999999986 477
Q ss_pred HhhceEEEEecCcEEEEeCCC
Q 000506 1073 EAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1073 ~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
+.+|++++|++ |+++..|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999985 799999985
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=334.12 Aligned_cols=218 Identities=24% Similarity=0.370 Sum_probs=182.2
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 4667776552 2469999999999999999999999999999999999876 478999999987643
Q ss_pred ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000506 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRL 1016 (1458)
Q Consensus 937 ~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl 1016 (1458)
.. .+.++|++|++.+++.+|++||+.+....+. .+ ++.+.++++.+++.+..+..+ ..||||||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 22 3579999999998899999999987654331 11 235788999999988777664 47999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCCcc
Q 000506 1017 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQ 1096 (1458)
Q Consensus 1017 ~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~~~ 1096 (1458)
+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|+...
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~- 210 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKINK- 210 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChhh-
Confidence 9999999999999999999999999999999999999877999999999986 57788999999985 78999998643
Q ss_pred hHHHHHHHH
Q 000506 1097 SQKLVEYFE 1105 (1458)
Q Consensus 1097 ~~~~~~~f~ 1105 (1458)
.+.+.+.|.
T Consensus 211 ~~~~~~~~~ 219 (223)
T TIGR03740 211 SENLEKLFV 219 (223)
T ss_pred cccHHHHHH
Confidence 233444444
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=379.43 Aligned_cols=207 Identities=29% Similarity=0.499 Sum_probs=179.6
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCCCCCCCCCC
Q 000506 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHFGEMT 260 (1458)
Q Consensus 184 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 260 (1458)
.+|+|+|++|+|||.++|+|+||||||||+|+|+|+++|. +|+|.+||.++.+... |+.+|||+|++.+|.. |
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-S 562 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-S 562 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-c
Confidence 5999999999999999999999999999999999999998 9999999999987654 6889999999999966 9
Q ss_pred HHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCC
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 340 (1458)
|+||+.++. |+.+.++++++|.+++. .+. +..++...||.||+ +..
T Consensus 563 I~eNi~l~~-------------------------p~~~~e~i~~A~~~ag~-----~~f---I~~lP~gy~t~v~E-~G~ 608 (709)
T COG2274 563 IRENIALGN-------------------------PEATDEEIIEAAQLAGA-----HEF---IENLPMGYDTPVGE-GGA 608 (709)
T ss_pred HHHHHhcCC-------------------------CCCCHHHHHHHHHHhCc-----HHH---HHhccccccccccc-CCC
Confidence 999998742 23334456666666553 233 33589999999997 556
Q ss_pred CCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCe
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 341 GLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~ 420 (1458)
+||||||||++|||||+.+|+||+||||||+||+.+...|.+.|.++.+ ++|+|++.|++ .+.+.+|+|++|++|+
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl--~ti~~adrIiVl~~Gk 684 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRL--STIRSADRIIVLDQGK 684 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccc--hHhhhccEEEEccCCc
Confidence 6999999999999999999999999999999999999999999999874 56777766554 5889999999999999
Q ss_pred EEEEcChhhHHH
Q 000506 421 IVYQGPREKVLE 432 (1458)
Q Consensus 421 iv~~G~~~~~~~ 432 (1458)
++.+|+.+++.+
T Consensus 685 iv~~gs~~ell~ 696 (709)
T COG2274 685 IVEQGSHEELLA 696 (709)
T ss_pred eeccCCHHHHHH
Confidence 999999999876
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=346.78 Aligned_cols=218 Identities=27% Similarity=0.362 Sum_probs=181.5
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.++.. ....+.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|+++|.+..
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 5788999888411 0011359999999999999999999999999999999999876 47899999999863
Q ss_pred c-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000506 936 Q-------ATFARVSGYCEQNDI-HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVD 1006 (1458)
Q Consensus 936 ~-------~~~~~~~gyv~Q~~~-~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 1006 (1458)
. ...++.+|||+|++. .+...||.|++.|+.... ..+.++.++++.++++.++|. +..++. +.
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 143 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----PF 143 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----cc
Confidence 1 234678999999862 333469999999875432 234555667789999999996 455554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G~ 221 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-GH 221 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999877999999999986 57788999999985 79
Q ss_pred EEEeCCC
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~~~G~~ 1093 (1458)
+++.|+.
T Consensus 222 i~~~g~~ 228 (288)
T PRK13643 222 IISCGTP 228 (288)
T ss_pred EEEECCH
Confidence 9999986
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=335.99 Aligned_cols=199 Identities=30% Similarity=0.456 Sum_probs=165.7
Q ss_pred ceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcccccceEEEEccCCCCC--CCCCH
Q 000506 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHS--PHVTV 958 (1458)
Q Consensus 881 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~lTV 958 (1458)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. ..++.++|++|++.+. ...||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 459999999999999999999999999999999999876 47899999998653 3456799999998763 34899
Q ss_pred HHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000506 959 YESLLFSAWLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037 (1458)
Q Consensus 959 ~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsg 1037 (1458)
+||+.+....... .....+..++.++++++.+++.+..++.+ ..||||||||++||+||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 00112234456889999999987777654 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1038 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1038 LD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999999878999999999986 57788999999974 5 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=354.59 Aligned_cols=207 Identities=27% Similarity=0.363 Sum_probs=177.2
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc------cceEEEecCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP------QRTCAYISQNDLH 255 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~ 255 (1458)
++++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++||+|++.+
T Consensus 17 ~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l 93 (343)
T PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNL 93 (343)
T ss_pred ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCcc
Confidence 356999999999999999999999999999999999999998 9999999998865321 4579999999999
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 335 (1458)
++.+||+||+.+.....+... .+ ....++.+++.+||++..++.+.
T Consensus 94 ~~~~tv~eni~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gL~~~~~~~~~ 139 (343)
T PRK11153 94 LSSRTVFDNVALPLELAGTPK----------AE------------------------IKARVTELLELVGLSDKADRYPA 139 (343)
T ss_pred CCCCcHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhCChh
Confidence 999999999998654332110 00 01124557899999988888877
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEE
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~l 415 (1458)
+ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+ ++++.++|+.+++.++||+|++
T Consensus 140 ~-----LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tiilvtH~~~~i~~~~d~v~~ 213 (343)
T PRK11153 140 Q-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELG-LTIVLITHEMDVVKRICDRVAV 213 (343)
T ss_pred h-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEE
Confidence 6 999999999999999999999999999999999999999999999976434 4566677888899999999999
Q ss_pred EcCCeEEEEcChhhHH
Q 000506 416 LSEGQIVYQGPREKVL 431 (1458)
Q Consensus 416 L~~G~iv~~G~~~~~~ 431 (1458)
|++|++++.|+.+++.
T Consensus 214 l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 214 IDAGRLVEQGTVSEVF 229 (343)
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999998874
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=350.16 Aligned_cols=207 Identities=29% Similarity=0.401 Sum_probs=175.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc--ccceEEEecCCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV--PQRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 259 (1458)
+.++|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (303)
T TIGR01288 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEF 92 (303)
T ss_pred CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCC
Confidence 346999999999999999999999999999999999999988 999999999875322 246799999999999999
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
||+||+.+..+..+... . + ....++.+++.+||++..++.+++
T Consensus 93 tv~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~ll~~~~l~~~~~~~~~~--- 135 (303)
T TIGR01288 93 TVRENLLVFGRYFGMST----------R----------E--------------IEAVIPSLLEFARLESKADVRVAL--- 135 (303)
T ss_pred cHHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHCCChhHhcCchhh---
Confidence 99999987543321100 0 0 001234578899999988888877
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCC
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G 419 (1458)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+ ++|+.++|+.+++.++||+|++|++|
T Consensus 136 --LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g-~til~~sH~~~~~~~~~d~i~~l~~G 211 (303)
T TIGR01288 136 --LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RG-KTILLTTHFMEEAERLCDRLCVLESG 211 (303)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CC-CEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999975 34 56666788889999999999999999
Q ss_pred eEEEEcChhhHHH
Q 000506 420 QIVYQGPREKVLE 432 (1458)
Q Consensus 420 ~iv~~G~~~~~~~ 432 (1458)
++++.|+++++.+
T Consensus 212 ~i~~~g~~~~~~~ 224 (303)
T TIGR01288 212 RKIAEGRPHALID 224 (303)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=334.51 Aligned_cols=211 Identities=26% Similarity=0.359 Sum_probs=174.0
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.+... .+.+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 4678888776310 112469999999999999999999999999999999999876 47999999998764
Q ss_pred cc---c---cc-ceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000506 936 QA---T---FA-RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGL 1008 (1458)
Q Consensus 936 ~~---~---~~-~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 1008 (1458)
.. . ++ +.++|++|++.+++.+||+|++.+....+. ....+..+.+.++++.+|+.+..++.+ ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 31 1 22 579999999988889999999988654321 223334456789999999988777664 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEE
Q 000506 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087 (1458)
Q Consensus 1009 SgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~ 1087 (1458)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+ +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999999764 899999999986 34 55899999986 565
Q ss_pred E
Q 000506 1088 I 1088 (1458)
Q Consensus 1088 ~ 1088 (1458)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 4
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=346.54 Aligned_cols=216 Identities=25% Similarity=0.325 Sum_probs=183.5
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++.. +.+.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 47889999887411 12359999999999999999999999999999999999876 4799999999986
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 935 NQ---ATFARVSGYCEQNDI-HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~-~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
.. ...++.+||++|++. .++..||+||+.|+.... ..+.++..++++++++.+||.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234568999999974 667889999999875432 2345555667899999999998777764 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++ ..+|++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999986 45 67999999985 79998
Q ss_pred eCCC
Q 000506 1090 AGPL 1093 (1458)
Q Consensus 1090 ~G~~ 1093 (1458)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 8875
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=349.92 Aligned_cols=229 Identities=21% Similarity=0.230 Sum_probs=186.0
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|++++++............+...+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEEC
Confidence 58899998887531100000001123569999999999999999999999999999999999886 4789999999986
Q ss_pred Ccc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000506 935 NQA------TFARVSGYCEQND--IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGV 1005 (1458)
Q Consensus 935 ~~~------~~~~~~gyv~Q~~--~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 1005 (1458)
... .+++.++||+|++ .++|.+||.|++.+...... ...+.++.+++++++++.++|. +..++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 431 2456799999997 57889999999988654321 1234556667889999999995 345554 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1006 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
..|||||||||+||+||+.+|++|++||||+|||..++..++++|+++.++ |.|||++||+++ .+.+.+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999765 899999999986 57778999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|++++.|+.
T Consensus 238 G~ive~g~~ 246 (331)
T PRK15079 238 GHAVELGTY 246 (331)
T ss_pred CEEEEEcCH
Confidence 799999985
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=334.16 Aligned_cols=193 Identities=27% Similarity=0.393 Sum_probs=164.9
Q ss_pred ceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc---ccccceEEEEccCCC-CCCCC
Q 000506 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATFARVSGYCEQNDI-HSPHV 956 (1458)
Q Consensus 881 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~l 956 (1458)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 469999999999999999999999999999999999876 478999999987542 234567999999975 46678
Q ss_pred CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000506 957 TVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1458)
Q Consensus 957 TV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTs 1036 (1458)
||+||+.+....+ .....+.++.++++++.++|.+..++.+ ..||||||||++||+||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998865332 1223344456889999999987766654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1037 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1037 gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
|||+.++..+++.|++++++|+|||+++|++. ++...||++++|++|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999986 577789999999863
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=346.69 Aligned_cols=218 Identities=22% Similarity=0.341 Sum_probs=181.4
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 378899998874210 012469999999999999999999999999999999999876 4789999999886
Q ss_pred Cc-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 000506 935 NQ-------ATFARVSGYCEQND--IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPG 1004 (1458)
Q Consensus 935 ~~-------~~~~~~~gyv~Q~~--~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 1004 (1458)
.. ...++.+|||+|++ .+++ .||.||+.|..... ..+.++..++++++++.+||. +..++.
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~----- 142 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS----- 142 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 32 13567899999986 3444 59999999865322 234455566789999999996 566655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEec
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKR 1083 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~ 1083 (1458)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.++|+++.++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~ 221 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221 (286)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999999764 899999999986 57788999999985
Q ss_pred CcEEEEeCCC
Q 000506 1084 GGQVIYAGPL 1093 (1458)
Q Consensus 1084 gG~~~~~G~~ 1093 (1458)
|++++.|+.
T Consensus 222 -G~i~~~g~~ 230 (286)
T PRK13646 222 -GSIVSQTSP 230 (286)
T ss_pred -CEEEEECCH
Confidence 789999875
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=341.02 Aligned_cols=218 Identities=22% Similarity=0.247 Sum_probs=181.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 478899988763 2469999999999999999999999999999999999876 4789999999876
Q ss_pred Ccc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhhcC----------C--CCCHHHHHHHHHHHHHHcCCCccccc
Q 000506 935 NQA---T-FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS----------S--DIDSKTRKMFVDEVMDLVELEPLTNA 998 (1458)
Q Consensus 935 ~~~---~-~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~----------~--~~~~~~~~~~v~~~l~~l~L~~~~~~ 998 (1458)
... . .+..++|++|++.+++.+||+||+.++...... . .....+..+.++++++.+|+.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 432 1 234589999999999999999999986431110 0 00112334567889999999877776
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhce
Q 000506 999 MVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1077 (1458)
Q Consensus 999 ~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~ 1077 (1458)
.+ ..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |+|||+++|++. ++.+.||+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 64 479999999999999999999999999999999999999999999999875 899999999986 57788999
Q ss_pred EEEEecCcEEEEeCCCC
Q 000506 1078 LLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1078 vlll~~gG~~~~~G~~~ 1094 (1458)
+++|++ |++++.|+.+
T Consensus 224 i~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 224 IYVVNQ-GTPLANGTPE 239 (255)
T ss_pred EEEEEC-CeEEecCCHH
Confidence 999985 7899988863
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=337.55 Aligned_cols=215 Identities=25% Similarity=0.385 Sum_probs=174.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc----cceEEEecCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP----QRTCAYISQNDLHFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 258 (1458)
.++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 46999999999999999999999999999999999999987 9999999998765432 3459999999999999
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
+||+||+.+.....+... +.+. .. ..+. ......++.+++.+||++..++.+++
T Consensus 90 ~tv~~~l~~~~~~~~~~~-------~~~~---~~-~~~~-------------~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (236)
T cd03219 90 LTVLENVMVAAQARTGSG-------LLLA---RA-RREE-------------REARERAEELLERVGLADLADRPAGE-- 143 (236)
T ss_pred CCHHHHHHHHHhhccccc-------cccc---cc-cccH-------------HHHHHHHHHHHHHcCccchhhCChhh--
Confidence 999999988654321000 0000 00 0000 00111345678899998888887776
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+ .+++.++|+.+++.+++|++++|++
T Consensus 144 ---LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 144 ---LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RG-ITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999875 34 4566677888899999999999999
Q ss_pred CeEEEEcChhhHH
Q 000506 419 GQIVYQGPREKVL 431 (1458)
Q Consensus 419 G~iv~~G~~~~~~ 431 (1458)
|++++.|+++++.
T Consensus 219 G~i~~~~~~~~~~ 231 (236)
T cd03219 219 GRVIAEGTPDEVR 231 (236)
T ss_pred CEEEeecCHHHhc
Confidence 9999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=342.58 Aligned_cols=211 Identities=26% Similarity=0.353 Sum_probs=177.5
Q ss_pred cccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-------cceEEEec
Q 000506 178 SKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-------QRTCAYIS 250 (1458)
Q Consensus 178 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~ 250 (1458)
.+.+.+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++
T Consensus 32 ~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~ 108 (269)
T cd03294 32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVF 108 (269)
T ss_pred hhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEe
Confidence 4445677999999999999999999999999999999999999987 9999999998764321 34699999
Q ss_pred CCCCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccc
Q 000506 251 QNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICA 330 (1458)
Q Consensus 251 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 330 (1458)
|++.+++.+||+||+.+.....+... .+ ....++.+++.+||++..
T Consensus 109 q~~~~~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~ 154 (269)
T cd03294 109 QSFALLPHRTVLENVAFGLEVQGVPR----------AE------------------------REERAAEALELVGLEGWE 154 (269)
T ss_pred cCcccCCCCcHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCHhHh
Confidence 99999999999999988654321100 00 011234578899999888
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhcc
Q 000506 331 DTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLF 410 (1458)
Q Consensus 331 dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~ 410 (1458)
++.+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+ ++++.++|+.+++.+++
T Consensus 155 ~~~~~~-----LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tiii~tH~~~~~~~~~ 228 (269)
T cd03294 155 HKYPDE-----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ-KTIVFITHDLDEALRLG 228 (269)
T ss_pred hCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhc
Confidence 888877 999999999999999999999999999999999999999999999876434 45666778888999999
Q ss_pred CEEEEEcCCeEEEEcChhhHH
Q 000506 411 DNIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 411 D~v~lL~~G~iv~~G~~~~~~ 431 (1458)
|++++|++|++++.|+++++.
T Consensus 229 d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 229 DRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=338.09 Aligned_cols=213 Identities=22% Similarity=0.333 Sum_probs=179.4
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+. .+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 478899988763 2469999999999999999999999999999999999876 4789999999876
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCC
Q 000506 935 NQA----TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV-ELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 935 ~~~----~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LS 1009 (1458)
... ..++.++|++|++.+++.+||.||+.++.... ..++..+.++++++.+ ++.+..+..+ ..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-----GTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-----hhCC
Confidence 432 23567999999999999999999998864221 1122334567778887 4766555543 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999878999999999986 68889999999985 78999
Q ss_pred eCCCC
Q 000506 1090 AGPLG 1094 (1458)
Q Consensus 1090 ~G~~~ 1094 (1458)
.|+..
T Consensus 218 ~~~~~ 222 (237)
T PRK11614 218 EDTGD 222 (237)
T ss_pred eCCHH
Confidence 99863
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=345.64 Aligned_cols=219 Identities=25% Similarity=0.320 Sum_probs=181.5
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+.... ...+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 467888888774110 012459999999999999999999999999999999999887 4799999999875
Q ss_pred Cc-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000506 935 NQ-------ATFARVSGYCEQNDI-HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGV 1005 (1458)
Q Consensus 935 ~~-------~~~~~~~gyv~Q~~~-~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 1005 (1458)
.. ...++.+||++|++. .+..+||.|++.|..... ....++..++++++++.++|. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP----- 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----
Confidence 32 224567999999973 333589999998865432 233455566789999999997 5666664
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1006 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|+++ ++.+.||++++|++ |
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G 221 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-G 221 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 479999999999999999999999999999999999999999999999877999999999986 57789999999985 7
Q ss_pred EEEEeCCC
Q 000506 1086 QVIYAGPL 1093 (1458)
Q Consensus 1086 ~~~~~G~~ 1093 (1458)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (287)
T PRK13641 222 KLIKHASP 229 (287)
T ss_pred EEEEeCCH
Confidence 89998875
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=366.26 Aligned_cols=214 Identities=29% Similarity=0.461 Sum_probs=179.4
Q ss_pred CCeEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECC
Q 000506 852 QPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG 931 (1458)
Q Consensus 852 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1458)
.+-.++|+|++|.+.. +...+|+|+|++|+|||.+||+|+||||||||+|+|+|+.+ +.+|+|.+||
T Consensus 468 ~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg 534 (709)
T COG2274 468 LQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDG 534 (709)
T ss_pred cCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC
Confidence 3457999999999863 22369999999999999999999999999999999999987 5899999999
Q ss_pred eeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcC-------CCcccccccc
Q 000506 932 YPKNQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVE-------LEPLTNAMVG 1001 (1458)
Q Consensus 932 ~~~~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg 1001 (1458)
++.++ ..+|+.+|||+||+.++. -|++||+.++. .+.+.++ +.++++..| +..-.|+.+|
T Consensus 535 ~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e~----i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 535 VDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDEE----IIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred EeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHHH----HHHHHHHhCcHHHHHhcccccccccc
Confidence 98643 568899999999998874 69999998753 2233222 333333333 3344577887
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEE
Q 000506 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1081 (1458)
Q Consensus 1002 ~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll 1081 (1458)
..| .+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|+++. +|+|+|+++|+++ ..+.+|++++|
T Consensus 605 E~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl 680 (709)
T COG2274 605 EGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVL 680 (709)
T ss_pred cCC-CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEc
Confidence 544 5899999999999999999999999999999999999999999999985 5799999999985 67899999999
Q ss_pred ecCcEEEEeCCC
Q 000506 1082 KRGGQVIYAGPL 1093 (1458)
Q Consensus 1082 ~~gG~~~~~G~~ 1093 (1458)
++ |+++..|+.
T Consensus 681 ~~-Gkiv~~gs~ 691 (709)
T COG2274 681 DQ-GKIVEQGSH 691 (709)
T ss_pred cC-CceeccCCH
Confidence 85 899999996
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=337.12 Aligned_cols=214 Identities=25% Similarity=0.360 Sum_probs=181.1
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEec
Confidence 367888888763 2459999999999999999999999999999999999876 4789999999875
Q ss_pred C---------cccccceEEEEccCCCCCCCCCHHHHHHHHH-hhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000506 935 N---------QATFARVSGYCEQNDIHSPHVTVYESLLFSA-WLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPG 1004 (1458)
Q Consensus 935 ~---------~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~-~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 1004 (1458)
. ....++.++|++|++.+++.+||.||+.+.. ... ....++..+.++++++.+|+.+..++.+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 139 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP---- 139 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence 2 0123567999999999999999999997532 221 1223344567889999999988777664
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|.+
T Consensus 140 -~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~- 216 (242)
T PRK11124 140 -LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN- 216 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 479999999999999999999999999999999999999999999999877999999999986 57778999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|++++.|+.
T Consensus 217 g~i~~~~~~ 225 (242)
T PRK11124 217 GHIVEQGDA 225 (242)
T ss_pred CEEEEeCCH
Confidence 789998875
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=343.59 Aligned_cols=213 Identities=24% Similarity=0.351 Sum_probs=180.5
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.++ +++.+|+|||++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 56788887663 12459999999999999999999999999999999999876 47899999999764
Q ss_pred c----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 936 Q----ATFARVSGYCEQNDI-HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 936 ~----~~~~~~~gyv~Q~~~-~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
. ...++.+||++|++. .+...||.||+.+..... ..+.++.++.++++++.++|.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999975 366789999998865322 2344455567899999999988877764 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEe
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~ 1090 (1458)
|||||++||+||+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|++. ++ +.+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 45 67999999985 789999
Q ss_pred CCC
Q 000506 1091 GPL 1093 (1458)
Q Consensus 1091 G~~ 1093 (1458)
|+.
T Consensus 217 g~~ 219 (274)
T PRK13644 217 GEP 219 (274)
T ss_pred CCH
Confidence 885
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=336.41 Aligned_cols=210 Identities=30% Similarity=0.437 Sum_probs=173.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-cceEEEecCCCCCCCCCCH
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEMTV 261 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 261 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 46999999999999999999999999999999999999987 9999999998754332 4579999999999989999
Q ss_pred HHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCC
Q 000506 262 RETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRG 341 (1458)
Q Consensus 262 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 341 (1458)
+||+.++....+...+.+ .. + ....++.+++.+||++..++.+++
T Consensus 92 ~e~l~~~~~~~~~~~~~~------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~----- 136 (239)
T cd03296 92 FDNVAFGLRVKPRSERPP------EA----------E--------------IRAKVHELLKLVQLDWLADRYPAQ----- 136 (239)
T ss_pred HHHHhhhhhhccccccCC------HH----------H--------------HHHHHHHHHHHcCChhhhhcChhh-----
Confidence 999988643221100000 00 0 011234578899998888888776
Q ss_pred CChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeE
Q 000506 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421 (1458)
Q Consensus 342 LSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~i 421 (1458)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|+|++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tvii~sH~~~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELH-VTTVFVTHDQEEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 999999999999999999999999999999999999999999999976434 4555667778889999999999999999
Q ss_pred EEEcChhhHH
Q 000506 422 VYQGPREKVL 431 (1458)
Q Consensus 422 v~~G~~~~~~ 431 (1458)
++.|+++++.
T Consensus 216 ~~~~~~~~~~ 225 (239)
T cd03296 216 EQVGTPDEVY 225 (239)
T ss_pred EEecCHHHHh
Confidence 9999987763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=336.62 Aligned_cols=215 Identities=25% Similarity=0.347 Sum_probs=179.6
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 57788877663 2469999999999999999999999999999999999876 47899999998754
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcC-----CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000506 936 QA----TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS-----SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD 1006 (1458)
Q Consensus 936 ~~----~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1006 (1458)
.. ..++.++|++|++.+++.+||+||+.+....... .....++.+++++++++.+++.+..+..+ +
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 21 1235699999999999999999999886432100 00112334567899999999988777664 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
.||||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|++. ++.+.||++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999875 799999999986 57788999999985 78
Q ss_pred EEEeCCC
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~~~G~~ 1093 (1458)
++..|+.
T Consensus 220 ~~~~~~~ 226 (242)
T TIGR03411 220 VLAEGSL 226 (242)
T ss_pred EEeeCCH
Confidence 8888875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=338.84 Aligned_cols=213 Identities=24% Similarity=0.323 Sum_probs=180.7
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.+. .+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 66 (252)
T TIGR03005 2 RFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYH 66 (252)
T ss_pred EEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5778887763 2469999999999999999999999999999999999876 478999999987532
Q ss_pred ----------------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 000506 937 ----------------ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000 (1458)
Q Consensus 937 ----------------~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v 1000 (1458)
...++.++|++|++.+++..||.||+.++.... .....++..+.++++++.+++.+..+..+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 144 (252)
T TIGR03005 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMP 144 (252)
T ss_pred cccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcCh
Confidence 124567999999999999999999998753211 12233445567889999999987776654
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEE
Q 000506 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELL 1079 (1458)
Q Consensus 1001 g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vl 1079 (1458)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++...+|+++
T Consensus 145 -----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~ 218 (252)
T TIGR03005 145 -----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVC 218 (252)
T ss_pred -----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEE
Confidence 479999999999999999999999999999999999999999999999775 899999999986 5778899999
Q ss_pred EEecCcEEEEeCCC
Q 000506 1080 LMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1080 ll~~gG~~~~~G~~ 1093 (1458)
+|++ |++++.|+.
T Consensus 219 ~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 219 FFDK-GRIVEQGKP 231 (252)
T ss_pred EEEC-CEEEEeCCH
Confidence 9985 789988875
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=335.59 Aligned_cols=205 Identities=25% Similarity=0.379 Sum_probs=173.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc----cceEEEecCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP----QRTCAYISQNDLHFG 257 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 257 (1458)
.+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFR 88 (232)
T ss_pred CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccc
Confidence 346999999999999999999999999999999999999987 9999999998754332 246999999999999
Q ss_pred CCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCc
Q 000506 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQ 337 (1458)
Q Consensus 258 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 337 (1458)
.+||+||+.+.....+.. +.+ ....++.+++.+||++..++.+++
T Consensus 89 ~~tv~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~- 133 (232)
T cd03218 89 KLTVEENILAVLEIRGLS----------KKE------------------------REEKLEELLEEFHITHLRKSKASS- 133 (232)
T ss_pred cCcHHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhhCChhh-
Confidence 999999998754322110 000 011235578899999888888776
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEc
Q 000506 338 MRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417 (1458)
Q Consensus 338 ~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~ 417 (1458)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+ ++++.++|+.+++.+++|+|++|+
T Consensus 134 ----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~ 207 (232)
T cd03218 134 ----LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RG-IGVLITDHNVRETLSITDRAYIIY 207 (232)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999875 24 456667788889999999999999
Q ss_pred CCeEEEEcChhhH
Q 000506 418 EGQIVYQGPREKV 430 (1458)
Q Consensus 418 ~G~iv~~G~~~~~ 430 (1458)
+|++++.|+.+++
T Consensus 208 ~G~i~~~~~~~~~ 220 (232)
T cd03218 208 EGKVLAEGTPEEI 220 (232)
T ss_pred CCeEEEEeCHHHh
Confidence 9999999998775
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=354.95 Aligned_cols=202 Identities=26% Similarity=0.337 Sum_probs=176.0
Q ss_pred cceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcc---c----ccceEEEEccCCCC
Q 000506 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA---T----FARVSGYCEQNDIH 952 (1458)
Q Consensus 880 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~~~ 952 (1458)
...+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... . .++.+|||+|+..+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 3458999999999999999999999999999999999886 4789999999986431 1 13579999999999
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000506 953 SPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1032 (1458)
Q Consensus 953 ~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLD 1032 (1458)
++.+||+||+.|....+ ..+.++..++++++++.++|.+..++.+ +.||||||||++|||||+.+|++||||
T Consensus 118 ~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999876543 2234455567899999999998877764 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1033 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
|||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999975 4899999999986 57788999999985 789988875
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=337.43 Aligned_cols=217 Identities=24% Similarity=0.288 Sum_probs=180.0
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1458)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 367888887763 245899999999999999999999999999999999987531 3689999999
Q ss_pred eeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCCC
Q 000506 932 YPKNQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMVGLPG 1004 (1458)
Q Consensus 932 ~~~~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~~ 1004 (1458)
.+... ...++.+||++|++.+++.+||.||+.+....+.. ....++..+.++++++.++|.+ ..++.
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 143 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP----- 143 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----
Confidence 87642 23456799999999888999999999886543211 1123344567889999999864 23433
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
+..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|++. ++.+.+|++++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~- 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK- 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 357999999999999999999999999999999999999999999999864 899999999986 57788999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|+++..|+.
T Consensus 221 G~i~~~g~~ 229 (250)
T PRK14247 221 GQIVEWGPT 229 (250)
T ss_pred CeEEEECCH
Confidence 789888875
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=334.93 Aligned_cols=205 Identities=29% Similarity=0.376 Sum_probs=173.2
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc------ccceEEEecCCCCCCC
Q 000506 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV------PQRTCAYISQNDLHFG 257 (1458)
Q Consensus 184 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~~ 257 (1458)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999987 999999999876432 1457999999999999
Q ss_pred CCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCc
Q 000506 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQ 337 (1458)
Q Consensus 258 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 337 (1458)
.+||+||+.+.....+... .+ ....++.+++.+||++..++.+.+
T Consensus 96 ~~t~~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~- 140 (233)
T cd03258 96 SRTVFENVALPLEIAGVPK----------AE------------------------IEERVLELLELVGLEDKADAYPAQ- 140 (233)
T ss_pred CCcHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHCCChhhhhcChhh-
Confidence 9999999988644221100 00 011234578899999888887766
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEc
Q 000506 338 MRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417 (1458)
Q Consensus 338 ~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~ 417 (1458)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+ ++++.++|+.+++.+++|++++|+
T Consensus 141 ----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 141 ----LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELG-LTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999876434 456666777889999999999999
Q ss_pred CCeEEEEcChhhHH
Q 000506 418 EGQIVYQGPREKVL 431 (1458)
Q Consensus 418 ~G~iv~~G~~~~~~ 431 (1458)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987753
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=336.69 Aligned_cols=218 Identities=23% Similarity=0.283 Sum_probs=176.8
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 2 KIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred eEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 5678877663 246999999999999999999999999999999999984211578999999987643
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCC----CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCC
Q 000506 937 A---T-FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSS----DIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVDG 1007 (1458)
Q Consensus 937 ~---~-~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~----~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~ 1007 (1458)
. . .+..++|++|++.+++.+|++|++.+........ ..+.++..+.++++++.++|. +..+..++ ..
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 144 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EG 144 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cC
Confidence 1 1 2334899999999999999999998764322110 112233345788999999997 45555432 24
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-hceEEEEecCcE
Q 000506 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLMKRGGQ 1086 (1458)
Q Consensus 1008 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~-~D~vlll~~gG~ 1086 (1458)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+... +|++++|++ |+
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~ 222 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GR 222 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999877999999999986 46666 799999985 78
Q ss_pred EEEeCCC
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~~~G~~ 1093 (1458)
+++.|+.
T Consensus 223 i~~~g~~ 229 (243)
T TIGR01978 223 IVKSGDV 229 (243)
T ss_pred EEEecCH
Confidence 9988875
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=337.89 Aligned_cols=215 Identities=22% Similarity=0.257 Sum_probs=177.8
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1458)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999988763 245899999999999999999999999999999999987632 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE----PLTNAMVGL 1002 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 1002 (1458)
.+... ...++.++|++|++..++ .||+||+.+....+. ....++.++.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87532 234567999999988774 899999988654321 112333456688899999874 334443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999996 4799999999986 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000506 1083 RGGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~gG~~~~~G~~ 1093 (1458)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 5 789988875
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=337.88 Aligned_cols=217 Identities=24% Similarity=0.288 Sum_probs=179.8
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1458)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478899988763 245999999999999999999999999999999999987642 3589999999
Q ss_pred eeCC-----cccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000506 932 YPKN-----QATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMVGL 1002 (1458)
Q Consensus 932 ~~~~-----~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1002 (1458)
.+.. ...+++.++|++|++.+++.+||.||+.+....+.. ..+.++..+.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8763 123456799999999999999999999886543211 1123344456888999999853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 699999999986 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000506 1083 RGGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~gG~~~~~G~~ 1093 (1458)
+ |++++.|+.
T Consensus 223 ~-G~i~~~~~~ 232 (253)
T PRK14267 223 L-GKLIEVGPT 232 (253)
T ss_pred C-CEEEEeCCH
Confidence 5 789998875
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=343.25 Aligned_cols=218 Identities=26% Similarity=0.394 Sum_probs=177.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc-----ccceEEEecCCCC-CC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV-----PQRTCAYISQNDL-HF 256 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 256 (1458)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+|||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999998 999999999886532 2467999999963 33
Q ss_pred CCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc--ccccccc
Q 000506 257 GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD--ICADTMV 334 (1458)
Q Consensus 257 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~--~~~dt~v 334 (1458)
...||+||+.|.....+.. +.+ ....++.+++.+||+ +..|+.+
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~ 142 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------EEE------------------------IENRVKRAMNIVGLDYEDYKDKSP 142 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------HHH------------------------HHHHHHHHHHHcCCCchhhccCCc
Confidence 4579999998864322110 000 111345688999997 5677777
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEE
Q 000506 335 GDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNII 414 (1458)
Q Consensus 335 g~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~ 414 (1458)
.. ||||||||++||+||+.+|++|+|||||+|||+.++.++.+.|+++++.. +++|+.++|+.+++.+++|+|+
T Consensus 143 ~~-----LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 143 FE-----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEY-NMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred cc-----CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 66 99999999999999999999999999999999999999999999997643 4566677888899999999999
Q ss_pred EEcCCeEEEEcChhhHHH---HHHhcCCCCCC
Q 000506 415 LLSEGQIVYQGPREKVLE---FFEYMGFKCPD 443 (1458)
Q Consensus 415 lL~~G~iv~~G~~~~~~~---~F~~~G~~~p~ 443 (1458)
+|++|+++++|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988743 23344555443
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=338.01 Aligned_cols=214 Identities=25% Similarity=0.307 Sum_probs=178.2
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1458)
.++++|+++.+. ++.+|+|+|++|++||++||+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 588999988663 245899999999999999999999999999999999987531 3689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMVGL 1002 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1002 (1458)
.+... ..+++.+||++|++.+++ .||+||+.+....+ ..+.++..+.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 134567999999988887 89999999875432 1233444556888999999843 33433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
+..||||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++++ |+|||+++|++. ++.+.+|++++|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999864 899999999986 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000506 1083 RGGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~gG~~~~~G~~ 1093 (1458)
+ |++++.|+.
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 5 789998875
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=347.37 Aligned_cols=206 Identities=27% Similarity=0.446 Sum_probs=177.9
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc--ccceEEEecCCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV--PQRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 259 (1458)
++.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.+||++|++.+++.+
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~ 90 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCC
Confidence 456999999999999999999999999999999999999998 999999999875432 246799999999999999
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
||.||+.|.++..+... .+ .....+.+++.+||++..|+.++.
T Consensus 91 tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~--- 133 (301)
T TIGR03522 91 YVREYLQFIAGIYGMKG----------QL------------------------LKQRVEEMIELVGLRPEQHKKIGQ--- 133 (301)
T ss_pred cHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHCCCchHhcCchhh---
Confidence 99999998765433110 00 011235688999999999888877
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCC
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G 419 (1458)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ + ++|+.++|..+++.++||+|++|++|
T Consensus 134 --LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~-~tiii~sH~l~~~~~~~d~i~~l~~G 208 (301)
T TIGR03522 134 --LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--D-KTIILSTHIMQEVEAICDRVIIINKG 208 (301)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--C-CEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999853 4 56677788889999999999999999
Q ss_pred eEEEEcChhhHHH
Q 000506 420 QIVYQGPREKVLE 432 (1458)
Q Consensus 420 ~iv~~G~~~~~~~ 432 (1458)
++++.|+.+++..
T Consensus 209 ~i~~~g~~~~~~~ 221 (301)
T TIGR03522 209 KIVADKKLDELSA 221 (301)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=338.64 Aligned_cols=214 Identities=27% Similarity=0.400 Sum_probs=180.5
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.++ ++.+|+|+|+++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 67888887763 2469999999999999999999999999999999999876 47899999998754
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000506 936 Q---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQ 1012 (1458)
Q Consensus 936 ~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1012 (1458)
. ...++.++|++|++.+++.+||+|++.+..... ....++.++.++++++.+++.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 233467999999998888899999998854321 1122333456889999999988777765 4799999
Q ss_pred HHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1013 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1013 rqRl~ia~aL~------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
|||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||+++|++. ++.+.+|++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999997 66999999999986 57779999999985 7
Q ss_pred EEEEeCCCC
Q 000506 1086 QVIYAGPLG 1094 (1458)
Q Consensus 1086 ~~~~~G~~~ 1094 (1458)
++++.|+..
T Consensus 218 ~i~~~~~~~ 226 (258)
T PRK13548 218 RLVADGTPA 226 (258)
T ss_pred EEEeeCCHH
Confidence 888888753
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=332.66 Aligned_cols=203 Identities=28% Similarity=0.420 Sum_probs=169.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc----cceEEEecCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP----QRTCAYISQNDLHFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 258 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 46999999999999999999999999999999999999987 9999999998765332 3569999999999999
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHc-CCcccccccccCc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLL-GLDICADTMVGDQ 337 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~l-gL~~~~dt~vg~~ 337 (1458)
+||+||+.+.....+ . . + .....+.+++.+ ++++..++.+.+
T Consensus 90 ~t~~~~l~~~~~~~~--~-~----~-----------------------------~~~~~~~~l~~~~~l~~~~~~~~~~- 132 (222)
T cd03224 90 LTVEENLLLGAYARR--R-A----K-----------------------------RKARLERVYELFPRLKERRKQLAGT- 132 (222)
T ss_pred CcHHHHHHHHhhhcC--c-h----h-----------------------------HHHHHHHHHHHHHhhhhhhhCchhh-
Confidence 999999988643221 0 0 0 000123355666 466667777766
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEc
Q 000506 338 MRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417 (1458)
Q Consensus 338 ~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~ 417 (1458)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+ ++++.++|+.+++.+++|+|++|+
T Consensus 133 ----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~ 206 (222)
T cd03224 133 ----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EG-VTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhccEEEEee
Confidence 999999999999999999999999999999999999999999999875 34 566667788889999999999999
Q ss_pred CCeEEEEcChhhHH
Q 000506 418 EGQIVYQGPREKVL 431 (1458)
Q Consensus 418 ~G~iv~~G~~~~~~ 431 (1458)
+|+++..|+.+++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999987753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=341.79 Aligned_cols=214 Identities=25% Similarity=0.371 Sum_probs=181.7
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
+.++|+++.++. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|++..
T Consensus 4 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 678898887731 2358999999999999999999999999999999999876 47999999998764
Q ss_pred c---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000506 936 Q---ATFARVSGYCEQNDI-HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 936 ~---~~~~~~~gyv~Q~~~-~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1011 (1458)
. ...++.+|||+|++. .+...||.|++.+..... ..+.++..+.++++++.++|.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567999999974 344679999998765322 2344455567899999999988777765 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEe
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~ 1090 (1458)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||++++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999875 899999999986 57789999999985 789999
Q ss_pred CCC
Q 000506 1091 GPL 1093 (1458)
Q Consensus 1091 G~~ 1093 (1458)
|+.
T Consensus 220 g~~ 222 (277)
T PRK13652 220 GTV 222 (277)
T ss_pred CCH
Confidence 885
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=331.36 Aligned_cols=200 Identities=28% Similarity=0.363 Sum_probs=169.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCCCCCCCCHH
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVR 262 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 262 (1458)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++||+|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 56999999999999999999999999999999999999887 9999999998763 346799999999889989999
Q ss_pred HHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCCC
Q 000506 263 ETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV 342 (1458)
Q Consensus 263 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGL 342 (1458)
||+.+.....+... .+ ....++.+++.+||++..++.+++ |
T Consensus 92 e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------AE------------------------ARERAEELLELVGLSGFENAYPHQ-----L 132 (220)
T ss_pred HHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCChhhhhCCccc-----C
Confidence 99988644322100 00 011235578899998888888776 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEc--CCe
Q 000506 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS--EGQ 420 (1458)
Q Consensus 343 SGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~--~G~ 420 (1458)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+..+ ++|+.++|+.+++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETG-KTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 99999999999999999999999999999999999999999999865434 455566777888999999999999 799
Q ss_pred EEEEcCh
Q 000506 421 IVYQGPR 427 (1458)
Q Consensus 421 iv~~G~~ 427 (1458)
++..++.
T Consensus 212 i~~~~~~ 218 (220)
T cd03293 212 IVAEVEV 218 (220)
T ss_pred EEEEEEe
Confidence 9988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=334.85 Aligned_cols=204 Identities=26% Similarity=0.369 Sum_probs=168.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCcccEEEECCeecCCcc-----ccceEEEecCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKL-----DDDLKLTGKIKYCGHEFKEFV-----PQRTCAYISQN 252 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~-----~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~ 252 (1458)
+++|+|+|+++++||+++|+||||||||||+++|+|.+ +|+ +|+|.++|+++.... .++.++|++|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 46999999999999999999999999999999999999 776 999999999875432 24579999999
Q ss_pred CCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccc
Q 000506 253 DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADT 332 (1458)
Q Consensus 253 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 332 (1458)
+.++ .+||+||+.++.+..+.... . + ....++.+++.+||++..+.
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~~---------~----------~--------------~~~~~~~~l~~~~l~~~~~~ 135 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKLK---------E----------E--------------LDERVEEALRKAALWDEVKD 135 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCcH---------H----------H--------------HHHHHHHHHHHcCCChHHhc
Confidence 8888 78999999886543211000 0 0 01123457889999877666
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCE
Q 000506 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412 (1458)
Q Consensus 333 ~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 412 (1458)
.+. .+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ + ++|+.++|+.+++.+++|+
T Consensus 136 ~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~ 209 (227)
T cd03260 136 RLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADR 209 (227)
T ss_pred cCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCE
Confidence 530 134999999999999999999999999999999999999999999999875 3 5666677888899999999
Q ss_pred EEEEcCCeEEEEcChhh
Q 000506 413 IILLSEGQIVYQGPREK 429 (1458)
Q Consensus 413 v~lL~~G~iv~~G~~~~ 429 (1458)
+++|++|++++.|++++
T Consensus 210 i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 210 TAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEeCCEEEEecCccc
Confidence 99999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=329.99 Aligned_cols=200 Identities=31% Similarity=0.435 Sum_probs=169.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-cceEEEecCCCCCCCCCCH
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEMTV 261 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 261 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 46999999999999999999999999999999999999987 9999999998754332 3579999999988989999
Q ss_pred HHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCC
Q 000506 262 RETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRG 341 (1458)
Q Consensus 262 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 341 (1458)
+||+.+..+..+... .+ ....++.+++.+||++..++.+++
T Consensus 90 ~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (213)
T cd03301 90 YDNIAFGLKLRKVPK----------DE------------------------IDERVREVAELLQIEHLLDRKPKQ----- 130 (213)
T ss_pred HHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCHHHHhCChhh-----
Confidence 999988644321100 00 011235578899999888888877
Q ss_pred CChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeE
Q 000506 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421 (1458)
Q Consensus 342 LSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~i 421 (1458)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+ ++++.++|+.+++.+++|+|++|++|++
T Consensus 131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~~sH~~~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLG-TTTIYVTHDQVEAMTMADRIAVMNDGQI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 999999999999999999999999999999999999999999999976434 4555667778899999999999999999
Q ss_pred EEEc
Q 000506 422 VYQG 425 (1458)
Q Consensus 422 v~~G 425 (1458)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03301 210 QQIG 213 (213)
T ss_pred EecC
Confidence 9876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=339.76 Aligned_cols=233 Identities=25% Similarity=0.367 Sum_probs=187.3
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC-ceeeEEEECCee
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YTEGDISISGYP 933 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 933 (1458)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 478889987763 246999999999999999999999999999999999987642 246999999987
Q ss_pred CCc--------ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcC-----CCCCHHHHHHHHHHHHHHcCCCccccccc
Q 000506 934 KNQ--------ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS-----SDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000 (1458)
Q Consensus 934 ~~~--------~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~v 1000 (1458)
... ...++.++|++|++.+++.+||+|++.+......+ .....++.+++++++++.+++.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 12346799999999999999999999875321000 01112334567899999999988777764
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEE
Q 000506 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELL 1079 (1458)
Q Consensus 1001 g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vl 1079 (1458)
..||||||||++|||||+.+|++|+|||||+|||..++..+.+.|++++++ |+|||+++|++. ++.+.+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 479999999999999999999999999999999999999999999999764 899999999986 4778899999
Q ss_pred EEecCcEEEEeCCCCcc-hHHHHHHHHhC
Q 000506 1080 LMKRGGQVIYAGPLGRQ-SQKLVEYFEAV 1107 (1458)
Q Consensus 1080 ll~~gG~~~~~G~~~~~-~~~~~~~f~~~ 1107 (1458)
+|.+ |++++.|+..+. ...+.+.|..+
T Consensus 225 ~l~~-g~i~~~g~~~~~~~~~~~~~~~~~ 252 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQQFDNERFDHLYRSI 252 (262)
T ss_pred EEEC-CEEEEeCCHHHhccHHHHHHHhhh
Confidence 9985 788999886432 22344445443
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=342.55 Aligned_cols=215 Identities=27% Similarity=0.351 Sum_probs=182.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|++.
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 3788999887631 12459999999999999999999999999999999999977 4799999999986
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 935 NQ---ATFARVSGYCEQNDI-HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~-~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
.. ...++.+||++|++. .++..||.||+.+..... ..+.++..++++++++.+||.+..++.++ .|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPH-----RLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCH
Confidence 43 234567999999974 667789999998865432 23345556678999999999988777654 7999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
|||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++ +.+|++++|.+ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999876 899999999986 35 46999999985 78999
Q ss_pred eCCC
Q 000506 1090 AGPL 1093 (1458)
Q Consensus 1090 ~G~~ 1093 (1458)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13635 221 EGTP 224 (279)
T ss_pred ECCH
Confidence 9985
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=328.53 Aligned_cols=223 Identities=26% Similarity=0.359 Sum_probs=195.5
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-------cceEEEecCCC
Q 000506 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-------QRTCAYISQND 253 (1458)
Q Consensus 181 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d 253 (1458)
+-..-++|+|++|+.||++.|||-||||||||+++|.++.+|+ +|+|.++|.++..... ++.+++|+|+.
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F 115 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSF 115 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh
Confidence 3445689999999999999999999999999999999999998 9999999998876542 46799999999
Q ss_pred CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccc
Q 000506 254 LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTM 333 (1458)
Q Consensus 254 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 333 (1458)
.++|+.||.||..|+.+.+|.+.. | .+....+.|+..||+...+..
T Consensus 116 aLlPhrtVl~Nv~fGLev~Gv~~~----------e------------------------r~~~a~~~l~~VgL~~~~~~y 161 (386)
T COG4175 116 ALLPHRTVLENVAFGLEVQGVPKA----------E------------------------REERALEALELVGLEGYADKY 161 (386)
T ss_pred ccccchhHhhhhhcceeecCCCHH----------H------------------------HHHHHHHHHHHcCchhhhhcC
Confidence 999999999999999998886431 1 112345579999999999988
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEE
Q 000506 334 VGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413 (1458)
Q Consensus 334 vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v 413 (1458)
+.+ ||||+||||.|||||+.+|+||+||||+|+|||--+.++.+.|.++.+..++ +|+.++|+.+|++++.|||
T Consensus 162 p~e-----LSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~K-TIvFitHDLdEAlriG~rI 235 (386)
T COG4175 162 PNE-----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK-TIVFITHDLDEALRIGDRI 235 (386)
T ss_pred ccc-----ccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCC-eEEEEecCHHHHHhccceE
Confidence 877 9999999999999999999999999999999999999999999999887665 5566889999999999999
Q ss_pred EEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHh
Q 000506 414 ILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEV 454 (1458)
Q Consensus 414 ~lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev 454 (1458)
.+|.+|+|+..|+++|++. .|...-+++|..++
T Consensus 236 aimkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 236 AIMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EEecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 9999999999999999974 46666677776654
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=340.88 Aligned_cols=213 Identities=24% Similarity=0.353 Sum_probs=178.9
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|++..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 56788887763 2459999999999999999999999999999999999876 47899999999863
Q ss_pred c-----ccccceEEEEccCCCC-CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000506 936 Q-----ATFARVSGYCEQNDIH-SPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 936 ~-----~~~~~~~gyv~Q~~~~-~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1009 (1458)
. ...++.+||++|++.. +...|+.|++.+....+ ....++..+.++++++.+++.+..++.+ ..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 1345679999999753 34568999998764332 2233444556889999999988777654 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57788999999985 78999
Q ss_pred eCCC
Q 000506 1090 AGPL 1093 (1458)
Q Consensus 1090 ~G~~ 1093 (1458)
.|+.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 8875
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=329.22 Aligned_cols=194 Identities=25% Similarity=0.366 Sum_probs=165.6
Q ss_pred cceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHHHHH
Q 000506 886 DVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA-TFARVSGYCEQNDIHSPHVTVYESLLF 964 (1458)
Q Consensus 886 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTV~e~l~f 964 (1458)
|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++.+||+||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999876 4789999999876432 234679999999999999999999987
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000506 965 SAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044 (1458)
Q Consensus 965 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~ 1044 (1458)
....+. .. .++.++.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 543211 11 1234456889999999988777764 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1045 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1045 ~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
.+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 999999999764 899999999986 57788999999985 6777653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=337.84 Aligned_cols=217 Identities=26% Similarity=0.360 Sum_probs=181.3
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 67888887663 2469999999999999999999999999999999999876 47899999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000506 936 Q---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 936 ~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1011 (1458)
. ...++.++|++|+..+++.+||.|++.++...... .....+...+.++++++.+++.+..++.+ ..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHH
Confidence 2 23456799999999888889999999875311000 01111233456889999999988777664 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999999877999999999986 67889999999985 7888888
Q ss_pred CCC
Q 000506 1092 PLG 1094 (1458)
Q Consensus 1092 ~~~ 1094 (1458)
+.+
T Consensus 221 ~~~ 223 (255)
T PRK11231 221 TPE 223 (255)
T ss_pred CHH
Confidence 764
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=331.55 Aligned_cols=203 Identities=30% Similarity=0.429 Sum_probs=172.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc--cccceEEEecCCCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF--VPQRTCAYISQNDLHFGEMT 260 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lT 260 (1458)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 56999999999999999999999999999999999999987 99999999987542 12456999999999898999
Q ss_pred HHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCC
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 340 (1458)
|+||+.+..+..+... .+ ....++.+++.+||++..++.+++
T Consensus 92 v~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~---- 133 (220)
T cd03263 92 VREHLRFYARLKGLPK----------SE------------------------IKEEVELLLRVLGLTDKANKRART---- 133 (220)
T ss_pred HHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCHHHHhChhhh----
Confidence 9999988654322110 00 001234578889998888888776
Q ss_pred CCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCe
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 341 GLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~ 420 (1458)
|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++++ + .+++.++|+.+++.+++|++++|++|+
T Consensus 134 -LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 134 -LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999864 4 566667788888999999999999999
Q ss_pred EEEEcChhhH
Q 000506 421 IVYQGPREKV 430 (1458)
Q Consensus 421 iv~~G~~~~~ 430 (1458)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=329.41 Aligned_cols=198 Identities=23% Similarity=0.370 Sum_probs=168.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCCCCCCCCHH
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVR 262 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 262 (1458)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 46999999999999999999999999999999999999887 9999999987754 2356799999999999999999
Q ss_pred HHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCCC
Q 000506 263 ETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV 342 (1458)
Q Consensus 263 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGL 342 (1458)
||+.+.....+... . + ....++.+++.+||++..++.+.+ |
T Consensus 89 e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~-----L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK----------E----------E--------------ARRRIDEWLERLELSEYANKRVEE-----L 129 (210)
T ss_pred HHHHHHHHHcCCCh----------H----------H--------------HHHHHHHHHHHcCChHHHhCcHhh-----C
Confidence 99987644322100 0 0 011235578899998888887766 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeEE
Q 000506 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIV 422 (1458)
Q Consensus 343 SGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~iv 422 (1458)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. + .+++.++|+.+++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~-~-~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-G-KTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-C-CEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999998753 4 46666778888999999999999999998
Q ss_pred EEc
Q 000506 423 YQG 425 (1458)
Q Consensus 423 ~~G 425 (1458)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=332.62 Aligned_cols=210 Identities=26% Similarity=0.340 Sum_probs=174.8
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 2 EVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITK 66 (230)
T ss_pred EEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCC
Confidence 4677777653 2469999999999999999999999999999999999876 478999999987643
Q ss_pred c----cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCHH
Q 000506 937 A----TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVE-LEPLTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 937 ~----~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSgG 1011 (1458)
. ..++.++|++|++.+++.+|++|++.+....+. .. ..+.++++++.++ +.+..++.+ +.||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRG-----GDLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCCh-----hhCCHH
Confidence 1 124579999999999999999999988654321 11 1234577788776 555555554 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEe
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~ 1090 (1458)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+++..
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~ 213 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVAS 213 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999998875 899999999986 57778999999985 789999
Q ss_pred CCCC
Q 000506 1091 GPLG 1094 (1458)
Q Consensus 1091 G~~~ 1094 (1458)
|+..
T Consensus 214 ~~~~ 217 (230)
T TIGR03410 214 GAGD 217 (230)
T ss_pred CCHH
Confidence 8864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=336.45 Aligned_cols=217 Identities=21% Similarity=0.272 Sum_probs=179.9
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1458)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 377889988773 245999999999999999999999999999999999987532 2689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMVGL 1002 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1002 (1458)
.+... ...++.++|++|++.+++.+||+||+.+....+. ..+.++.++.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87531 2345679999999999999999999988654321 1123444567889999999842 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 357999999999999999999999999999999999999999999999864 689999999986 5778899999997
Q ss_pred c-----CcEEEEeCCC
Q 000506 1083 R-----GGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~-----gG~~~~~G~~ 1093 (1458)
+ .|++++.|+.
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 2 4799999875
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=324.39 Aligned_cols=196 Identities=32% Similarity=0.604 Sum_probs=164.8
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC-ceeeEEEECCee
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YTEGDISISGYP 933 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 933 (1458)
.++|+|++|.++.+ .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 58999999999642 13467999999999999999999999999999999999987632 578999999987
Q ss_pred CCc--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000506 934 KNQ--ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 934 ~~~--~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1011 (1458)
... ...++.++|++|++.+++.+||+|++.+....+ .+.. +..||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234667999999999999999999998754211 2222 3479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEe
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~ 1090 (1458)
||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 678777776654467889999999986 788765
Q ss_pred C
Q 000506 1091 G 1091 (1458)
Q Consensus 1091 G 1091 (1458)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=338.52 Aligned_cols=205 Identities=20% Similarity=0.225 Sum_probs=156.3
Q ss_pred CCeEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECC
Q 000506 852 QPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG 931 (1458)
Q Consensus 852 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1458)
.|..+.+.+|++.++. +.-+++.+++..++.-+..+++|+||+||||+++++.|... +..|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~ 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP 425 (582)
T ss_pred CCCeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc
Confidence 3446888888876642 11168999999999999999999999999999999999765 3567766654
Q ss_pred eeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCH
Q 000506 932 YPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL-TNAMVGLPGVDGLST 1010 (1458)
Q Consensus 932 ~~~~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSg 1010 (1458)
+++++|-.|..+-+-.+.|.+ +.+-..++. ...+ +.+++-+..+||..- +.. .+.+|||
T Consensus 426 --------r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~p--G~~~----ee~r~hl~~~Gl~g~la~~-----si~~LSG 485 (582)
T KOG0062|consen 426 --------RLRIKYFAQHHVDFLDKNVNA-VDFMEKSFP--GKTE----EEIRRHLGSFGLSGELALQ-----SIASLSG 485 (582)
T ss_pred --------cceecchhHhhhhHHHHHhHH-HHHHHHhCC--CCCH----HHHHHHHHhcCCCchhhhc-----cccccCC
Confidence 457899999876555555544 333333332 2222 335677889999753 222 2458999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEe
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~ 1090 (1458)
|||-||++|.....+|.+|+|||||+.||..+-..+-+.|++. +..|||++|+.+ -+-..|+.+.+.++|...-+.
T Consensus 486 GQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ie 561 (582)
T KOG0062|consen 486 GQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTPIE 561 (582)
T ss_pred cchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEeee
Confidence 9999999999999999999999999999999999999999887 457999999975 367789999999875544455
Q ss_pred CCC
Q 000506 1091 GPL 1093 (1458)
Q Consensus 1091 G~~ 1093 (1458)
|..
T Consensus 562 g~~ 564 (582)
T KOG0062|consen 562 GGI 564 (582)
T ss_pred ccH
Confidence 553
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=338.84 Aligned_cols=218 Identities=28% Similarity=0.406 Sum_probs=181.8
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 478999987763 2469999999999999999999999999999999999876 4789999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
.. ..+++.++|++|+..+++.+||.||+.+....... .........+.++++++.+++.+..++.++ .|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD-----SLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCH
Confidence 32 23456799999998888899999999875321110 001112334568899999999877776654 7999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
|||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999986 57788999999985 78888
Q ss_pred eCCCC
Q 000506 1090 AGPLG 1094 (1458)
Q Consensus 1090 ~G~~~ 1094 (1458)
.|+..
T Consensus 229 ~~~~~ 233 (265)
T PRK10575 229 QGTPA 233 (265)
T ss_pred ecCHH
Confidence 88753
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=334.39 Aligned_cols=213 Identities=26% Similarity=0.368 Sum_probs=172.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc------ccceEEEecCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV------PQRTCAYISQNDLHF 256 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 256 (1458)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 46999999999999999999999999999999999999887 999999999876532 235799999999999
Q ss_pred CCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccC
Q 000506 257 GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD 336 (1458)
Q Consensus 257 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 336 (1458)
+.+||+||+.+...... . .. ..+. +. ... .....++.+++.+||.+..++.+++
T Consensus 91 ~~~tv~~~l~~~~~~~~-~-~~---~~~~------~~-~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (241)
T cd03256 91 ERLSVLENVLSGRLGRR-S-TW---RSLF------GL-FPK--------------EEKQRALAALERVGLLDKAYQRADQ 144 (241)
T ss_pred ccCcHHHHHHhhhcccc-h-hh---hhhc------cc-CcH--------------HHHHHHHHHHHHcCChhhhCCCccc
Confidence 99999999987532110 0 00 0000 00 000 0011234578899998877777766
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|++++|
T Consensus 145 -----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 145 -----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG-ITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999876434 45666778888999999999999
Q ss_pred cCCeEEEEcChhhH
Q 000506 417 SEGQIVYQGPREKV 430 (1458)
Q Consensus 417 ~~G~iv~~G~~~~~ 430 (1458)
++|++++.|+++++
T Consensus 219 ~~G~i~~~~~~~~~ 232 (241)
T cd03256 219 KDGRIVFDGPPAEL 232 (241)
T ss_pred ECCEEEeecCHHHh
Confidence 99999999998875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=337.02 Aligned_cols=223 Identities=24% Similarity=0.338 Sum_probs=180.7
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
+.++|+++.++.....+ ..+.+.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67889888774210000 0113569999999999999999999999999999999999876 47899999998764
Q ss_pred cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000506 936 QA------TFARVSGYCEQND--IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVD 1006 (1458)
Q Consensus 936 ~~------~~~~~~gyv~Q~~--~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 1006 (1458)
.. ..++.++|++|++ .+.+.+||+|++.+..... .....+..++.++++++.+++. +..+..+ .
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLP-----R 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCCh-----h
Confidence 31 1356799999997 4667899999997754321 1222334456788999999996 5566554 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999865 899999999986 57778999999985 7
Q ss_pred EEEEeCCC
Q 000506 1086 QVIYAGPL 1093 (1458)
Q Consensus 1086 ~~~~~G~~ 1093 (1458)
++++.|+.
T Consensus 228 ~i~~~g~~ 235 (265)
T TIGR02769 228 QIVEECDV 235 (265)
T ss_pred EEEEECCH
Confidence 99999885
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=351.39 Aligned_cols=208 Identities=23% Similarity=0.323 Sum_probs=177.6
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-------cceEEEecCCC
Q 000506 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-------QRTCAYISQND 253 (1458)
Q Consensus 181 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d 253 (1458)
+...+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|++
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~ 115 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSF 115 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCC
Confidence 3456899999999999999999999999999999999999998 9999999998865432 24799999999
Q ss_pred CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccc
Q 000506 254 LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTM 333 (1458)
Q Consensus 254 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 333 (1458)
.+++.+||+||+.|..+..+... .+ ....++.+++.+||++..++.
T Consensus 116 ~l~~~~Tv~enl~~~~~~~~~~~----------~~------------------------~~~~~~e~L~~~gL~~~~~~~ 161 (400)
T PRK10070 116 ALMPHMTVLDNTAFGMELAGINA----------EE------------------------RREKALDALRQVGLENYAHSY 161 (400)
T ss_pred cCCCCCCHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCChhhhcC
Confidence 99999999999998765432110 00 011235578999999888888
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEE
Q 000506 334 VGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413 (1458)
Q Consensus 334 vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v 413 (1458)
+.+ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.+..+ ++|+.++|+.+++.+++|+|
T Consensus 162 ~~~-----LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g-~TIIivTHd~~~~~~~~Dri 235 (400)
T PRK10070 162 PDE-----LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ-RTIVFISHDLDEAMRIGDRI 235 (400)
T ss_pred ccc-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCC-CeEEEEECCHHHHHHhCCEE
Confidence 876 999999999999999999999999999999999999999999999876444 45666778889999999999
Q ss_pred EEEcCCeEEEEcChhhHH
Q 000506 414 ILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 414 ~lL~~G~iv~~G~~~~~~ 431 (1458)
++|++|++++.|+++++.
T Consensus 236 ~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 236 AIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEEECCEEEecCCHHHHH
Confidence 999999999999988864
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=338.87 Aligned_cols=218 Identities=22% Similarity=0.302 Sum_probs=182.8
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.+.++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|++.
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEh
Confidence 588999998773 2469999999999999999999999999999999999876 4789999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
.. ...++.++|++|++..++..||+|++.+...-..+ .....+..++.++++++.++|.+..++.+ +.|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCh
Confidence 43 23346799999999988899999999875211100 00011234456889999999987777664 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.+.+|++++|++ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999864 899999999986 58889999999985 78999
Q ss_pred eCCCC
Q 000506 1090 AGPLG 1094 (1458)
Q Consensus 1090 ~G~~~ 1094 (1458)
.|+..
T Consensus 225 ~g~~~ 229 (265)
T PRK10253 225 QGAPK 229 (265)
T ss_pred eCCHH
Confidence 98864
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=330.54 Aligned_cols=195 Identities=24% Similarity=0.366 Sum_probs=164.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc------ccceEEEecCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV------PQRTCAYISQNDLHF 256 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 256 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999999987 999999999875432 235799999999999
Q ss_pred CCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccC
Q 000506 257 GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD 336 (1458)
Q Consensus 257 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 336 (1458)
+.+||+||+.+..+..+... .+ ....++.+++.+||++..++.+++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 138 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVPP----------RD------------------------ANERVSAALEKVGLEGKAHALPMQ 138 (216)
T ss_pred ccccHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCChhhhhCChhh
Confidence 99999999988654322100 00 011235578899999888888776
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. + ++|+.++|+.+++.+++|++++|
T Consensus 139 -----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~-~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 139 -----LSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR-G-TTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998653 4 45666778888999999999999
Q ss_pred cCCeE
Q 000506 417 SEGQI 421 (1458)
Q Consensus 417 ~~G~i 421 (1458)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99974
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=340.43 Aligned_cols=218 Identities=24% Similarity=0.343 Sum_probs=178.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++... ...+++|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEc
Confidence 367889988774110 011359999999999999999999999999999999999876 4789999999875
Q ss_pred Cc-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCC
Q 000506 935 NQ-------ATFARVSGYCEQND--IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-LTNAMVGLPG 1004 (1458)
Q Consensus 935 ~~-------~~~~~~~gyv~Q~~--~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~ 1004 (1458)
.. ..+++.++|++|++ .+++ .||+||+.+..... ....++.++.++++++.++|.+ ..+..+
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 143 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNP---- 143 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc----
Confidence 42 23456799999996 3444 69999998764332 1233444566889999999973 455543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~- 220 (280)
T PRK13649 144 -FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK- 220 (280)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-
Confidence 479999999999999999999999999999999999999999999999877999999999986 57788999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|++++.|+.
T Consensus 221 G~i~~~g~~ 229 (280)
T PRK13649 221 GKLVLSGKP 229 (280)
T ss_pred CEEEEeCCH
Confidence 788888875
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=338.98 Aligned_cols=214 Identities=29% Similarity=0.372 Sum_probs=180.0
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
+.++|+++.+. +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 56788887763 12358999999999999999999999999999999999876 47899999998863
Q ss_pred c-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000506 936 Q-----ATFARVSGYCEQNDI-HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 936 ~-----~~~~~~~gyv~Q~~~-~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1009 (1458)
. ...++.++|++|++. .+...||.|++.+..... ....++..+.+.++++.++|.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 124567999999973 334579999998764321 2234445567889999999998887765 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++.+.||++++|++ |++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999976 57778999999986 78998
Q ss_pred eCCC
Q 000506 1090 AGPL 1093 (1458)
Q Consensus 1090 ~G~~ 1093 (1458)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=334.25 Aligned_cols=220 Identities=24% Similarity=0.326 Sum_probs=177.8
Q ss_pred eEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcC---CCceeeEEEEC
Q 000506 854 LSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYTEGDISIS 930 (1458)
Q Consensus 854 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~---~~~~~G~i~i~ 930 (1458)
..++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|... +.+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3588999998773 2359999999999999999999999999999999999743 11368999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000506 931 GYPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGV 1005 (1458)
Q Consensus 931 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 1005 (1458)
|++... ...++.++|++|++.+++ .||+||+.+....+.. ...+..++.++++++.+++.+....... ..+
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLH-ESA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987642 134567999999998887 5999999887543211 1223345668889999998642211111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1006 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|++ |
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~l~~-G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAFFYM-G 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999985 4799999999986 57788999999986 7
Q ss_pred EEEEeCCC
Q 000506 1086 QVIYAGPL 1093 (1458)
Q Consensus 1086 ~~~~~G~~ 1093 (1458)
+++..|+.
T Consensus 225 ~i~~~g~~ 232 (253)
T PRK14242 225 KLIEVGPT 232 (253)
T ss_pred EEEEeCCH
Confidence 88888874
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=328.98 Aligned_cols=213 Identities=26% Similarity=0.396 Sum_probs=177.1
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++.. .....+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 47899998876410 011358999999999999999999999999999999999876 4789999999876
Q ss_pred Cccc------c-cceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000506 935 NQAT------F-ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDG 1007 (1458)
Q Consensus 935 ~~~~------~-~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1007 (1458)
.... . ++.++|++|++.+++.+||.||+.+....+ ....++.+++++++++.+++.+..++.+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4321 1 257999999999989999999998865432 1233445567899999999988777664 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1008 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|++. .+ +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 899999999986 34 56999999985 67
Q ss_pred EEE
Q 000506 1087 VIY 1089 (1458)
Q Consensus 1087 ~~~ 1089 (1458)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 754
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=352.93 Aligned_cols=210 Identities=27% Similarity=0.416 Sum_probs=176.8
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHFGE 258 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 258 (1458)
.+++|+|+|+.+++||+++|+||||||||||||+|+|.++|. +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 15 ~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~ 91 (402)
T PRK09536 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFE 91 (402)
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCC
Confidence 456999999999999999999999999999999999999998 9999999998865432 4679999999998889
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
+||+||+.++..... + ... .. . ......++.+++.+||.+..|+.+.+
T Consensus 92 ~tv~e~v~~~~~~~~-~-~~~---~~-----------~--------------~~~~~~v~~~le~vgl~~~~~~~~~~-- 139 (402)
T PRK09536 92 FDVRQVVEMGRTPHR-S-RFD---TW-----------T--------------ETDRAAVERAMERTGVAQFADRPVTS-- 139 (402)
T ss_pred CCHHHHHHhccchhc-c-ccc---CC-----------C--------------HHHHHHHHHHHHHcCCchhhcCChhh--
Confidence 999999988532100 0 000 00 0 00112356689999999988888776
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
|||||||||.|||||+.+|++|+|||||+|||+.++.++.+.|+++++ .+ ++|+.++|+.+++.+++|++++|++
T Consensus 140 ---LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g-~TIIivsHdl~~~~~~adrii~l~~ 214 (402)
T PRK09536 140 ---LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DG-KTAVAAIHDLDLAARYCDELVLLAD 214 (402)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999985 34 4566677889999999999999999
Q ss_pred CeEEEEcChhhHH
Q 000506 419 GQIVYQGPREKVL 431 (1458)
Q Consensus 419 G~iv~~G~~~~~~ 431 (1458)
|++++.|+++++.
T Consensus 215 G~iv~~G~~~ev~ 227 (402)
T PRK09536 215 GRVRAAGPPADVL 227 (402)
T ss_pred CEEEEecCHHHHh
Confidence 9999999998864
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=337.61 Aligned_cols=207 Identities=23% Similarity=0.357 Sum_probs=173.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc------ccceEEEecCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV------PQRTCAYISQNDLHF 256 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 256 (1458)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 45999999999999999999999999999999999999987 999999999875432 135699999999999
Q ss_pred CCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccC
Q 000506 257 GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD 336 (1458)
Q Consensus 257 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 336 (1458)
+.+||.||+.+....... ..+.+ ....+..+++.+||++..++.+++
T Consensus 97 ~~~tv~enl~~~~~~~~~---------~~~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~ 143 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ---------LPAPL------------------------LHSTVMMKLEAVGLRGAAKLMPSE 143 (269)
T ss_pred CCCCHHHHHHHHHHHccC---------CCHHH------------------------HHHHHHHHHHHcCChhhhhCChhh
Confidence 999999999875321100 00000 011234578899999888888877
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|++++|
T Consensus 144 -----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tiiivsH~~~~~~~~~d~v~~l 217 (269)
T PRK11831 144 -----LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALG-VTCVVVSHDVPEVLSIADHAYIV 217 (269)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC-cEEEEEecCHHHHHHhhCEEEEE
Confidence 999999999999999999999999999999999999999999999876433 45666778888999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000506 417 SEGQIVYQGPREKVL 431 (1458)
Q Consensus 417 ~~G~iv~~G~~~~~~ 431 (1458)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=336.73 Aligned_cols=217 Identities=29% Similarity=0.408 Sum_probs=180.3
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 46778877663 2469999999999999999999999999999999999876 47899999998754
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000506 936 Q---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 936 ~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1011 (1458)
. ...++.++|++|++..++.+||+||+.+....... .....++..++++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 3 23345799999998878889999999875311100 01111233456889999999988777764 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
||||++||++|+.+|++++|||||+|||+.+...+++.|+++.++|.|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877899999999987 57789999999985 7888888
Q ss_pred CCC
Q 000506 1092 PLG 1094 (1458)
Q Consensus 1092 ~~~ 1094 (1458)
+..
T Consensus 220 ~~~ 222 (256)
T TIGR03873 220 PPR 222 (256)
T ss_pred CHH
Confidence 763
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=341.36 Aligned_cols=216 Identities=23% Similarity=0.345 Sum_probs=175.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc-------cccceEEEecCCC--
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF-------VPQRTCAYISQND-- 253 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d-- 253 (1458)
.++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++||+|++
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 45999999999999999999999999999999999999988 99999999987531 1235799999996
Q ss_pred CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc-ccccc
Q 000506 254 LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD-ICADT 332 (1458)
Q Consensus 254 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt 332 (1458)
.++ ..||+||+.|+.+..+... .+ ....++.+++.+||. +..++
T Consensus 97 ~l~-~~tv~eni~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gL~~~~~~~ 141 (290)
T PRK13634 97 QLF-EETVEKDICFGPMNFGVSE----------ED------------------------AKQKAREMIELVGLPEELLAR 141 (290)
T ss_pred hhh-hhhHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHCCCChhhhhC
Confidence 344 5799999998654322110 00 011245688999997 56777
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCE
Q 000506 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412 (1458)
Q Consensus 333 ~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 412 (1458)
.+.+ |||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++..+ ++|+.++|+.+++.+++|+
T Consensus 142 ~~~~-----LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g-~tviiitHd~~~~~~~~dr 215 (290)
T PRK13634 142 SPFE-----LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG-LTTVLVTHSMEDAARYADQ 215 (290)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCE
Confidence 7766 999999999999999999999999999999999999999999999976434 5666678888999999999
Q ss_pred EEEEcCCeEEEEcChhhHHH---HHHhcCCCCC
Q 000506 413 IILLSEGQIVYQGPREKVLE---FFEYMGFKCP 442 (1458)
Q Consensus 413 v~lL~~G~iv~~G~~~~~~~---~F~~~G~~~p 442 (1458)
|++|++|+++++|+++++.+ .+...|..+|
T Consensus 216 v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 216 IVVMHKGTVFLQGTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred EEEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence 99999999999999888642 2334444444
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=335.54 Aligned_cols=217 Identities=22% Similarity=0.294 Sum_probs=179.1
Q ss_pred CeEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcC--C-CceeeEEEE
Q 000506 853 PLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYTEGDISI 929 (1458)
Q Consensus 853 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~i 929 (1458)
...++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.+
T Consensus 11 ~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~ 77 (260)
T PRK10744 11 PSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL 77 (260)
T ss_pred CceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE
Confidence 34688999998773 2359999999999999999999999999999999999864 1 136899999
Q ss_pred CCeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccccc
Q 000506 930 SGYPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMV 1000 (1458)
Q Consensus 930 ~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v 1000 (1458)
+|.+... ..+++.++|++|++.+++ .||+||+.+....+. ..+.++.+++++++++.+++.+ ..+..
T Consensus 78 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 153 (260)
T PRK10744 78 DGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS- 153 (260)
T ss_pred CCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC-
Confidence 9987632 234578999999988877 899999987653221 1233444567889999999853 23333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEE
Q 000506 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1080 (1458)
Q Consensus 1001 g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vll 1080 (1458)
...||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|++. ++.+.+|++++
T Consensus 154 ----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~ 227 (260)
T PRK10744 154 ----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAF 227 (260)
T ss_pred ----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEE
Confidence 35799999999999999999999999999999999999999999999995 4789999999986 57788999999
Q ss_pred EecCcEEEEeCCC
Q 000506 1081 MKRGGQVIYAGPL 1093 (1458)
Q Consensus 1081 l~~gG~~~~~G~~ 1093 (1458)
|++ |+++..|+.
T Consensus 228 l~~-G~i~~~g~~ 239 (260)
T PRK10744 228 MYL-GELIEFGNT 239 (260)
T ss_pred EEC-CEEEEeCCH
Confidence 985 789988875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=327.81 Aligned_cols=196 Identities=27% Similarity=0.414 Sum_probs=167.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc-cccceEEEecCCCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF-VPQRTCAYISQNDLHFGEMT 260 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lT 260 (1458)
.+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLT 88 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCc
Confidence 346999999999999999999999999999999999999987 99999999876532 12457999999999999999
Q ss_pred HHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCC
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 340 (1458)
|+||+.+.....+. ....++.+++.+||++..++.+++
T Consensus 89 v~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~---- 126 (208)
T cd03268 89 ARENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKVKG---- 126 (208)
T ss_pred HHHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhHhh----
Confidence 99999875432110 001234578889998888888776
Q ss_pred CCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCe
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 341 GLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~ 420 (1458)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++ .+ .+++.++|+.+++.+++|++++|++|+
T Consensus 127 -LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~v~~l~~g~ 203 (208)
T cd03268 127 -FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QG-ITVLISSHLLSEIQKVADRIGIINKGK 203 (208)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999875 34 456666788889999999999999999
Q ss_pred EEEEc
Q 000506 421 IVYQG 425 (1458)
Q Consensus 421 iv~~G 425 (1458)
+++.|
T Consensus 204 i~~~g 208 (208)
T cd03268 204 LIEEG 208 (208)
T ss_pred EEecC
Confidence 98765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=326.97 Aligned_cols=192 Identities=26% Similarity=0.361 Sum_probs=162.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCC-CCCCCCH
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDL-HFGEMTV 261 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 261 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 56999999999999999999999999999999999999988 9999999998754333567999999974 3446799
Q ss_pred HHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCC
Q 000506 262 RETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRG 341 (1458)
Q Consensus 262 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 341 (1458)
+||+.+.....+ . ....++.+++.+||++..++.+++
T Consensus 90 ~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (205)
T cd03226 90 REELLLGLKELD--A------------------------------------GNEQAETVLKDLDLYALKERHPLS----- 126 (205)
T ss_pred HHHHhhhhhhcC--c------------------------------------cHHHHHHHHHHcCCchhcCCCchh-----
Confidence 999987532110 0 001234578999999888888876
Q ss_pred CChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeE
Q 000506 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421 (1458)
Q Consensus 342 LSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~i 421 (1458)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. + .+++.++|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~-~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ-G-KAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998653 4 4566677888889999999999999997
Q ss_pred E
Q 000506 422 V 422 (1458)
Q Consensus 422 v 422 (1458)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=332.83 Aligned_cols=206 Identities=29% Similarity=0.416 Sum_probs=172.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc---ccceEEEecCCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV---PQRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 259 (1458)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 46999999999999999999999999999999999999987 999999999875432 245799999999999999
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc--cccccccCc
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI--CADTMVGDQ 337 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~--~~dt~vg~~ 337 (1458)
||+||+.+..+..+... .+ ....+..+++.+||++ ..++.+.+
T Consensus 91 tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~l~l~~~~~~~~~~~~- 135 (242)
T cd03295 91 TVEENIALVPKLLKWPK----------EK------------------------IRERADELLALVGLDPAEFADRYPHE- 135 (242)
T ss_pred cHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCCcHHHHhcChhh-
Confidence 99999988643321100 00 0112345788899985 66776665
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEc
Q 000506 338 MRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417 (1458)
Q Consensus 338 ~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~ 417 (1458)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+ ++++.++|+.+++.+++|+|++|+
T Consensus 136 ----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g-~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 136 ----LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELG-KTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999876434 456667777888999999999999
Q ss_pred CCeEEEEcChhhHH
Q 000506 418 EGQIVYQGPREKVL 431 (1458)
Q Consensus 418 ~G~iv~~G~~~~~~ 431 (1458)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999987763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=332.61 Aligned_cols=220 Identities=20% Similarity=0.297 Sum_probs=178.9
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcC--CC-ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 931 (1458)
.++++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478889988763 2459999999999999999999999999999999999864 21 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD 1006 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1006 (1458)
++... ..+++.++|++|+..+++..||+||+.+...... .....+.++.++++++.+++.+....... ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcC
Confidence 87632 2346779999999999999999999987643321 11223334568899999998642111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|.+ |+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999975 689999999986 57789999999985 78
Q ss_pred EEEeCCC
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~~~G~~ 1093 (1458)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14256 225 LVECGET 231 (252)
T ss_pred EEEeCCH
Confidence 9998885
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=331.41 Aligned_cols=198 Identities=24% Similarity=0.361 Sum_probs=168.6
Q ss_pred cccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHH
Q 000506 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLL 963 (1458)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~ 963 (1458)
|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999976 47899999998764322 22489999999999999999998
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000506 964 FSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043 (1458)
Q Consensus 964 f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~ 1043 (1458)
+......+ ....++.++.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 76321111 2333444567889999999988777664 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1044 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1044 ~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998765 899999999986 57788999999985 788887764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=343.57 Aligned_cols=226 Identities=24% Similarity=0.267 Sum_probs=185.3
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+....... ...+...+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 478999998875311000 00123579999999999999999999999999999999999876 4689999999886
Q ss_pred Ccc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000506 935 NQA------TFARVSGYCEQND--IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-LTNAMVGLPGV 1005 (1458)
Q Consensus 935 ~~~------~~~~~~gyv~Q~~--~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 1005 (1458)
... .+++.++||+|++ .+.|.+||.+++....... .....++.++++.++++.+||.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 431 2456799999998 5788999999987754332 12345556678999999999964 45555 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1006 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
..||||||||++||+||+.+|++|++||||+|||..++..|+++|+++.++ |.|||++||+++ .+.+.+|++++|.+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999765 999999999986 46678999999985
Q ss_pred cEEEEeCCCC
Q 000506 1085 GQVIYAGPLG 1094 (1458)
Q Consensus 1085 G~~~~~G~~~ 1094 (1458)
|++++.|+..
T Consensus 231 G~ive~g~~~ 240 (327)
T PRK11308 231 GRCVEKGTKE 240 (327)
T ss_pred CEEEEECCHH
Confidence 7999999853
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=341.28 Aligned_cols=220 Identities=25% Similarity=0.362 Sum_probs=178.4
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc-------cccceEEEecCCC--C
Q 000506 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF-------VPQRTCAYISQND--L 254 (1458)
Q Consensus 184 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d--~ 254 (1458)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++ .
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999998 99999999987521 1245799999986 4
Q ss_pred CCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc-cccccc
Q 000506 255 HFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD-ICADTM 333 (1458)
Q Consensus 255 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 333 (1458)
+++ .||.||+.|+.+..+.. +.+ ....+..+++.+||. +..++.
T Consensus 97 l~~-~tv~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~L~~~~~~~~ 141 (288)
T PRK13643 97 LFE-ETVLKDVAFGPQNFGIP----------KEK------------------------AEKIAAEKLEMVGLADEFWEKS 141 (288)
T ss_pred ccc-chHHHHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCChhhccCC
Confidence 454 69999999875433211 000 011245578889996 466766
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEE
Q 000506 334 VGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413 (1458)
Q Consensus 334 vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v 413 (1458)
+.. ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++. + .+|+.++|+.+++.+++|+|
T Consensus 142 ~~~-----LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~-g-~til~vtHd~~~~~~~~dri 214 (288)
T PRK13643 142 PFE-----LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-G-QTVVLVTHLMDDVADYADYV 214 (288)
T ss_pred ccc-----CCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-C-CEEEEEecCHHHHHHhCCEE
Confidence 665 9999999999999999999999999999999999999999999998752 4 46666778888999999999
Q ss_pred EEEcCCeEEEEcChhhHH---HHHHhcCCCCCCCCCHH
Q 000506 414 ILLSEGQIVYQGPREKVL---EFFEYMGFKCPDRKGVA 448 (1458)
Q Consensus 414 ~lL~~G~iv~~G~~~~~~---~~F~~~G~~~p~~~~~a 448 (1458)
++|++|+++++|+++++. ++++..|+.+|.....+
T Consensus 215 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (288)
T PRK13643 215 YLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFA 252 (288)
T ss_pred EEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHH
Confidence 999999999999998874 33456677766544333
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=343.14 Aligned_cols=221 Identities=19% Similarity=0.241 Sum_probs=181.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCC-C-ceeeEEEECCe
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YTEGDISISGY 932 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~-~-~~~G~i~i~g~ 932 (1458)
.++++|+++.+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++ + +.+|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 3 LLNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred eEEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 36888998877421 1124699999999999999999999999999999999998752 1 46899999999
Q ss_pred eCCcc---cc----cceEEEEccCC--CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc---ccccc
Q 000506 933 PKNQA---TF----ARVSGYCEQND--IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL---TNAMV 1000 (1458)
Q Consensus 933 ~~~~~---~~----~~~~gyv~Q~~--~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~---~~~~v 1000 (1458)
++... .. ++.++||+|++ .+.|.+||.+++........ ....++.++++.++++.+||.+. .+..
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~- 150 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY- 150 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC-
Confidence 86431 11 24699999998 47889999998876543321 23445566789999999999753 3333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEE
Q 000506 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELL 1079 (1458)
Q Consensus 1001 g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq~s~~i~~~~D~vl 1079 (1458)
+.+|||||||||+||+||+.+|++|++||||+|||+.++..++++|+++.+ .|.|+|++||+++ .+.+.+|+++
T Consensus 151 ----p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~ 225 (326)
T PRK11022 151 ----PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKII 225 (326)
T ss_pred ----chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 458999999999999999999999999999999999999999999999976 4899999999986 4678899999
Q ss_pred EEecCcEEEEeCCC
Q 000506 1080 LMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1080 ll~~gG~~~~~G~~ 1093 (1458)
+|.+ |+++..|+.
T Consensus 226 vm~~-G~ive~g~~ 238 (326)
T PRK11022 226 VMYA-GQVVETGKA 238 (326)
T ss_pred EEEC-CEEEEECCH
Confidence 9985 799999985
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=332.85 Aligned_cols=219 Identities=21% Similarity=0.288 Sum_probs=176.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCc---CCCceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~---~~~~~~G~i~i~g 931 (1458)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 477889887763 245999999999999999999999999999999999962 2212489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD 1006 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1006 (1458)
++... ...++.++|++|++.+++ .||.||+.+....+.. ...+...+.++++++.+++.+..+.... ..+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLK-ESAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcc
Confidence 87642 234567999999988876 6999999886543311 1223344568899999998643211111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.||++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 5899999999986 57788999999985 78
Q ss_pred EEEeCCC
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~~~G~~ 1093 (1458)
+++.|+.
T Consensus 223 ~~~~~~~ 229 (250)
T PRK14245 223 MVEYDDT 229 (250)
T ss_pred EEEECCH
Confidence 9999975
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=349.19 Aligned_cols=204 Identities=23% Similarity=0.337 Sum_probs=177.6
Q ss_pred ccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCee----CCc---cc---c-cceEEEEc
Q 000506 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP----KNQ---AT---F-ARVSGYCE 947 (1458)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~----~~~---~~---~-~~~~gyv~ 947 (1458)
+...+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|+++|.+ ... .. . ++.++||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 45678999999999999999999999999999999999887 478999999963 211 11 2 25799999
Q ss_pred cCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000506 948 QNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPS 1027 (1458)
Q Consensus 948 Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~ 1027 (1458)
|++.+++.+||+||+.|+...+ ..+.++++++++++++.+||.+..+..++ .||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886443 23455666788999999999988887654 799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCC
Q 000506 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1028 illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~ 1094 (1458)
||+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999999765 899999999986 57889999999985 7899999863
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=329.78 Aligned_cols=195 Identities=27% Similarity=0.396 Sum_probs=163.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc-------ccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV-------PQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~ 255 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 56999999999999999999999999999999999999987 999999999876532 13579999999999
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 335 (1458)
++.+||+||+.+.....+... .+ ....++.+++.+||++..++.++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 139 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------KE------------------------RRERAEELLERVGLGDRLNHYPS 139 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhcChh
Confidence 999999999998654322100 00 01123557889999988888877
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEE
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~l 415 (1458)
+ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++..+. +|+.++|+.+++. .+|++++
T Consensus 140 ~-----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~-tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 140 E-----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGT-TIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred h-----cCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC-eEEEEECCHHHHh-hhcEEEE
Confidence 6 9999999999999999999999999999999999999999999999763344 5555666677776 9999999
Q ss_pred EcCCeE
Q 000506 416 LSEGQI 421 (1458)
Q Consensus 416 L~~G~i 421 (1458)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=367.81 Aligned_cols=221 Identities=21% Similarity=0.315 Sum_probs=186.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+. ++.+|+|||++|++||+++|+||||||||||+++|+|..++++.+|+|.++|.+.
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 378899988763 2469999999999999999999999999999999999876434689999999876
Q ss_pred Cccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 935 NQAT----FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 935 ~~~~----~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
.... .++.+|||+|++.+++.+||+|++.+....+.....+.++..+.++++++.+++.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 4321 24669999999988999999999988654321111223344567899999999988777765 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEe
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~ 1090 (1458)
|||||++||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|++. ++.+.||++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999878999999999986 57788999999985 789999
Q ss_pred CCCCc
Q 000506 1091 GPLGR 1095 (1458)
Q Consensus 1091 G~~~~ 1095 (1458)
|+...
T Consensus 225 ~~~~~ 229 (506)
T PRK13549 225 RPAAG 229 (506)
T ss_pred ccccc
Confidence 88754
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=330.58 Aligned_cols=212 Identities=22% Similarity=0.312 Sum_probs=177.8
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.++. + ..|||+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 567888887731 1 238999999999999999999999999999999876 47899999998764
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000506 936 QA-TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014 (1458)
Q Consensus 936 ~~-~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1014 (1458)
.. ..++.++|++|++.+++.+||.||+.+..... ... .+..++.++++++.+++.+..++.+ ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 32 23467999999999999999999998753211 111 2234556899999999988777765 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1015 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999986 57788999999985 789999885
Q ss_pred C
Q 000506 1094 G 1094 (1458)
Q Consensus 1094 ~ 1094 (1458)
.
T Consensus 215 ~ 215 (232)
T PRK10771 215 D 215 (232)
T ss_pred H
Confidence 3
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=301.38 Aligned_cols=201 Identities=29% Similarity=0.432 Sum_probs=178.8
Q ss_pred ceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcccccceEEEEccCCCCCCCCCHHH
Q 000506 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYE 960 (1458)
Q Consensus 881 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTV~e 960 (1458)
+.+|+|+|++|.+||.++++||||||||||||+++|..+ +..|+|.+||+++.... ...|.|+|++.++|-+||.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCC--ccceeEeccCccchhhHHHH
Confidence 459999999999999999999999999999999999987 47899999999876433 23589999999999999999
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000506 961 SLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040 (1458)
Q Consensus 961 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~ 1040 (1458)
|+.|+.+++ .+++.+|.+.+.+.+..+||.+..++.+ -+||||||||+.|||||..+|++|+||||.+.||+
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999999887 5678899999999999999999888775 37999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhhceEEEEecC-cEEEEeCCCC
Q 000506 1041 RAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRG-GQVIYAGPLG 1094 (1458)
Q Consensus 1041 ~~~~~i~~~l~~~~-~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g-G~~~~~G~~~ 1094 (1458)
-+++.++++|-++. ++|+.++++||+.. |..=+++++++|+.| |+|+..-|++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999998875 45999999999876 444467999999843 6888777663
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=337.23 Aligned_cols=215 Identities=25% Similarity=0.352 Sum_probs=181.4
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.+.++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 5889999887631 12468999999999999999999999999999999999876 4789999999986
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 935 NQ---ATFARVSGYCEQNDI-HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~-~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
.. ..+++.+||++|++. .++.+||+||+.+..... ....++..+.++++++.++|.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 235678999999974 567889999998864322 1233444567899999999988777764 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|+++ ++ ..+|++++|++ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999776 599999999986 34 57999999985 78888
Q ss_pred eCCC
Q 000506 1090 AGPL 1093 (1458)
Q Consensus 1090 ~G~~ 1093 (1458)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=347.39 Aligned_cols=210 Identities=24% Similarity=0.317 Sum_probs=178.2
Q ss_pred ccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCe----ecCCccc-------cceEE
Q 000506 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGH----EFKEFVP-------QRTCA 247 (1458)
Q Consensus 179 ~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~----~~~~~~~-------~~~~~ 247 (1458)
+.+...+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+ ++..... ++.++
T Consensus 33 ~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~ 109 (382)
T TIGR03415 33 ETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVS 109 (382)
T ss_pred hhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEE
Confidence 345677999999999999999999999999999999999999998 999999996 3332211 24699
Q ss_pred EecCCCCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc
Q 000506 248 YISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD 327 (1458)
Q Consensus 248 yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~ 327 (1458)
||+|++.+++.+||+||+.|+....+... .+ ....++.+++.+||+
T Consensus 110 ~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------~~------------------------~~~~a~e~le~vgL~ 155 (382)
T TIGR03415 110 MVFQKFALMPWLTVEENVAFGLEMQGMPE----------AE------------------------RRKRVDEQLELVGLA 155 (382)
T ss_pred EEECCCcCCCCCcHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCc
Confidence 99999999999999999998765432210 00 011245578999999
Q ss_pred ccccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHH
Q 000506 328 ICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAY 407 (1458)
Q Consensus 328 ~~~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~ 407 (1458)
+..|+.+++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+ .+++.++|+.+++.
T Consensus 156 ~~~~~~~~~-----LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~-~TII~iTHdl~e~~ 229 (382)
T TIGR03415 156 QWADKKPGE-----LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLN-KTIIFVSHDLDEAL 229 (382)
T ss_pred hhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHH
Confidence 988888877 999999999999999999999999999999999999999999999976444 56666778899999
Q ss_pred hccCEEEEEcCCeEEEEcChhhHH
Q 000506 408 DLFDNIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 408 ~~~D~v~lL~~G~iv~~G~~~~~~ 431 (1458)
+++|+|++|++|+++..|+++++.
T Consensus 230 ~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 230 KIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=328.64 Aligned_cols=212 Identities=29% Similarity=0.410 Sum_probs=180.9
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
.++|+++.+. .+.+|+|+|++++|||+++|+|+||||||||+++|+|..+ +..|+|.++|++...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 4677777663 2469999999999999999999999999999999999876 478999999987643
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000506 937 A-TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKR 1015 (1458)
Q Consensus 937 ~-~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1015 (1458)
. ..++.++|++|++..++.+|++||+.+....+ ....+...+.++++++.+++.+..++.+ ..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 2 23467999999999988999999998865433 1223344556889999999988777664 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1016 l~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999999865 899999999986 57788999999985 788888864
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=337.00 Aligned_cols=204 Identities=25% Similarity=0.322 Sum_probs=171.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCCCC-CCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDL-HFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 258 (1458)
.++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS 94 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhcc
Confidence 35999999999999999999999999999999999999987 9999999998765322 356999999963 4456
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
.||+||+.|+....+.. +. + ....++.+++.+||.+..++.+.+
T Consensus 95 ~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~L~~~~~~~~~~-- 138 (274)
T PRK13647 95 STVWDDVAFGPVNMGLD----------KD----------E--------------VERRVEEALKAVRMWDFRDKPPYH-- 138 (274)
T ss_pred CcHHHHHHhhHHHcCCC----------HH----------H--------------HHHHHHHHHHHCCCHHHhcCChhh--
Confidence 89999998864322110 00 0 011245678999999888888877
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. + ++|+.++|+.+++.+++|+|++|++
T Consensus 139 ---LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g-~tili~tH~~~~~~~~~d~i~~l~~ 213 (274)
T PRK13647 139 ---LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-G-KTVIVATHDVDLAAEWADQVIVLKE 213 (274)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-C-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999753 4 5666677888899999999999999
Q ss_pred CeEEEEcChhhH
Q 000506 419 GQIVYQGPREKV 430 (1458)
Q Consensus 419 G~iv~~G~~~~~ 430 (1458)
|+++++|+++++
T Consensus 214 G~i~~~g~~~~~ 225 (274)
T PRK13647 214 GRVLAEGDKSLL 225 (274)
T ss_pred CEEEEECCHHHh
Confidence 999999998654
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=331.96 Aligned_cols=205 Identities=22% Similarity=0.351 Sum_probs=172.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc-----cccceEEEecCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLHFG 257 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~ 257 (1458)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 46999999999999999999999999999999999999987 99999999987642 12457999999999999
Q ss_pred CCCHHHHHHHhhhh-ccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccC
Q 000506 258 EMTVRETMDFSGRC-LGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD 336 (1458)
Q Consensus 258 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 336 (1458)
.+||+||+.+.... .+.. +.+ ....++.+++.+||++..|..+.+
T Consensus 91 ~~tv~~~l~~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~ 136 (240)
T PRK09493 91 HLTALENVMFGPLRVRGAS----------KEE------------------------AEKQARELLAKVGLAERAHHYPSE 136 (240)
T ss_pred CCcHHHHHHhHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCChHHHhcChhh
Confidence 99999999875321 1100 000 011235578899998877877766
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++. + ++++.++|+.+++.+++|++++|
T Consensus 137 -----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~-~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 137 -----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-G-MTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998653 4 45666777888999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000506 417 SEGQIVYQGPREKVL 431 (1458)
Q Consensus 417 ~~G~iv~~G~~~~~~ 431 (1458)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988764
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=343.05 Aligned_cols=224 Identities=19% Similarity=0.260 Sum_probs=183.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC-ceeeEEEECCee
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YTEGDISISGYP 933 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 933 (1458)
.++++|++..+... .+...+|+|||++|++||++||+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 58899998877421 12356999999999999999999999999999999999987641 248999999998
Q ss_pred CCcc---c---cc-ceEEEEccCC--CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000506 934 KNQA---T---FA-RVSGYCEQND--IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPG 1004 (1458)
Q Consensus 934 ~~~~---~---~~-~~~gyv~Q~~--~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 1004 (1458)
+... . ++ +.++||+|++ .+.|.+|+.+++.+...... ....++..+++.++++.++|.+..+. .+ ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-MK-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-hc-CC
Confidence 6431 1 22 4799999998 67899999999987654322 23445556778999999999754322 11 23
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEec
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKR 1083 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~ 1083 (1458)
+.+||||||||++||+||+.+|+||++||||+|||..++..++++|+++.++ |.|||++|||++ .+.+.+|++++|.+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 5689999999999999999999999999999999999999999999999765 899999999986 46678999999985
Q ss_pred CcEEEEeCCC
Q 000506 1084 GGQVIYAGPL 1093 (1458)
Q Consensus 1084 gG~~~~~G~~ 1093 (1458)
|++++.|+.
T Consensus 238 -G~ive~g~~ 246 (330)
T PRK09473 238 -GRTMEYGNA 246 (330)
T ss_pred -CEEEEECCH
Confidence 799999985
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=343.19 Aligned_cols=209 Identities=19% Similarity=0.268 Sum_probs=175.3
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc------ccceEEEecCCC--
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV------PQRTCAYISQND-- 253 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d-- 253 (1458)
..++++|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.+.. .++.++||+|++
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchh
Confidence 356999999999999999999999999999999999999987 999999999886543 245799999997
Q ss_pred CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc-ccccc
Q 000506 254 LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD-ICADT 332 (1458)
Q Consensus 254 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt 332 (1458)
.++|.+||.|++.+..+....+ +.+.+ ....++.+++.+||. +..++
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~--------~~~~~------------------------~~~~~~~~l~~vgl~~~~~~~ 157 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPK--------LSRQE------------------------VKDRVKAMMLKVGLLPNLINR 157 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccC--------CCHHH------------------------HHHHHHHHHHHcCCChHHhcC
Confidence 5888999999998865432100 00000 011234578899994 46677
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCE
Q 000506 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412 (1458)
Q Consensus 333 ~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 412 (1458)
.+.+ |||||||||+||+||+.+|++|++||||+|||..++.++.+.|+++.+.. +++++.++|+...+.+++|+
T Consensus 158 ~p~~-----LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-~~til~iTHdl~~~~~~~dr 231 (331)
T PRK15079 158 YPHE-----FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM-GLSLIFIAHDLAVVKHISDR 231 (331)
T ss_pred Cccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCE
Confidence 7666 99999999999999999999999999999999999999999999997643 45677788999999999999
Q ss_pred EEEEcCCeEEEEcChhhHH
Q 000506 413 IILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 413 v~lL~~G~iv~~G~~~~~~ 431 (1458)
|++|++|++++.|+.+++.
T Consensus 232 i~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 232 VLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999998874
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=333.81 Aligned_cols=205 Identities=25% Similarity=0.346 Sum_probs=171.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc-----------cccceEEEecC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF-----------VPQRTCAYISQ 251 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----------~~~~~~~yv~Q 251 (1458)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q 92 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQ 92 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEec
Confidence 46999999999999999999999999999999999999887 99999999987532 12457999999
Q ss_pred CCCCCCCCCHHHHHHHhhhh-ccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccc
Q 000506 252 NDLHFGEMTVRETMDFSGRC-LGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICA 330 (1458)
Q Consensus 252 ~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 330 (1458)
++.+++.+||+||+.++... .+.. .. .....++.+++.+||++..
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~ 138 (250)
T PRK11264 93 NFNLFPHRTVLENIIEGPVIVKGEP----------KE------------------------EATARARELLAKVGLAGKE 138 (250)
T ss_pred CcccCCCCCHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCcchh
Confidence 99999999999999875321 1100 00 0011234578889998877
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhcc
Q 000506 331 DTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLF 410 (1458)
Q Consensus 331 dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~ 410 (1458)
|+.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+. + .+++.++|+.+++.+++
T Consensus 139 ~~~~~~-----LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~-~tvi~~tH~~~~~~~~~ 211 (250)
T PRK11264 139 TSYPRR-----LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-K-RTMVIVTHEMSFARDVA 211 (250)
T ss_pred hCChhh-----CChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-C-CEEEEEeCCHHHHHHhc
Confidence 877766 9999999999999999999999999999999999999999999998753 4 45666778888999999
Q ss_pred CEEEEEcCCeEEEEcChhhHH
Q 000506 411 DNIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 411 D~v~lL~~G~iv~~G~~~~~~ 431 (1458)
|++++|++|++++.|+.+++.
T Consensus 212 d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 212 DRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999988763
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=334.91 Aligned_cols=216 Identities=23% Similarity=0.272 Sum_probs=178.4
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCC---CceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1458)
.++++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 588999998773 24599999999999999999999999999999999998653 13789999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL----TNAMVGL 1002 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 1002 (1458)
.+... ..+++.++|++|++..++. ||.||+.+....+.. .....+..+.++++++.+++.+. .+..
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87642 2345679999999888875 999999987543311 11223334568899999999642 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
+..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ .+.+.+|++++|+
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999865 789999999986 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000506 1083 RGGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~gG~~~~~G~~ 1093 (1458)
+ |+++..|+.
T Consensus 237 ~-G~i~~~g~~ 246 (267)
T PRK14235 237 L-GNLVEVGDT 246 (267)
T ss_pred C-CEEEEeCCH
Confidence 5 789988874
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=334.19 Aligned_cols=213 Identities=25% Similarity=0.343 Sum_probs=172.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc------ccceEEEecCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV------PQRTCAYISQNDLHF 256 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 256 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 46999999999999999999999999999999999999987 999999999875432 245699999999999
Q ss_pred CCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccC
Q 000506 257 GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD 336 (1458)
Q Consensus 257 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 336 (1458)
+.+||+||+.++..... .... ... +..+ . .....++.+++.+||.+..++.+.+
T Consensus 92 ~~~tv~~~l~~~~~~~~--~~~~---~~~------~~~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYK--PTWR---SLL------GRFS-E--------------EDKERALSALERVGLADKAYQRADQ 145 (243)
T ss_pred ccccHHHHHhhcccccc--cchh---hhh------cccc-H--------------HHHHHHHHHHHHcCcHhhhcCCccc
Confidence 99999999987432100 0000 000 0000 0 0011235578899998877777766
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+ ++++.++|+.+++.+++|++++|
T Consensus 146 -----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 146 -----LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDG-ITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEEEE
Confidence 999999999999999999999999999999999999999999999876434 45666778888899999999999
Q ss_pred cCCeEEEEcChhhH
Q 000506 417 SEGQIVYQGPREKV 430 (1458)
Q Consensus 417 ~~G~iv~~G~~~~~ 430 (1458)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999998765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=319.94 Aligned_cols=190 Identities=58% Similarity=0.958 Sum_probs=162.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++.. .+++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|++.
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 46789998877421 012469999999999999999999999999999999999753225789999999886
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000506 935 NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014 (1458)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1014 (1458)
. ...++.++|++|++.+++.+||+||+.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 5 345678999999999999999999998753110 49999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1015 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
|++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++.++.+.+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999987799999999998644678899999998647888865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=336.04 Aligned_cols=216 Identities=25% Similarity=0.321 Sum_probs=181.9
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 5889999987631 12358999999999999999999999999999999999876 4789999999876
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 935 NQ---ATFARVSGYCEQNDI-HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~-~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
.. ...++.++|++|++. +++..|+.+++.+..... ....++..+.++++++.+++.+..+..+ ..|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 43 234567999999984 677889999998864322 2234444567889999999988777654 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++. .+|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998765 899999999986 455 4999999985 79999
Q ss_pred eCCCC
Q 000506 1090 AGPLG 1094 (1458)
Q Consensus 1090 ~G~~~ 1094 (1458)
.|+.+
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 98863
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=330.18 Aligned_cols=201 Identities=30% Similarity=0.443 Sum_probs=170.7
Q ss_pred ccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc--ccccceEEEEc-cCCCCCCC
Q 000506 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ--ATFARVSGYCE-QNDIHSPH 955 (1458)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-Q~~~~~~~ 955 (1458)
+.+++|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 44679999999999999999999999999999999999876 478999999986432 23456799997 55677789
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000506 956 VTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035 (1458)
Q Consensus 956 lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPT 1035 (1458)
+||+|++.+...++ ....++..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865432 2233444556788999999988877765 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1036 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1036 sgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999999765 899999999986 57788999999985 7887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=328.05 Aligned_cols=198 Identities=32% Similarity=0.470 Sum_probs=167.5
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc--cccceEEEecCCCCCCCCCCH
Q 000506 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF--VPQRTCAYISQNDLHFGEMTV 261 (1458)
Q Consensus 184 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lTV 261 (1458)
++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999987 99999999987542 124679999999999999999
Q ss_pred HHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCC
Q 000506 262 RETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRG 341 (1458)
Q Consensus 262 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 341 (1458)
+||+.+.....+.. +.+ ....++.+++.+||++..++.+++
T Consensus 96 ~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 136 (218)
T cd03266 96 RENLEYFAGLYGLK----------GDE------------------------LTARLEELADRLGMEELLDRRVGG----- 136 (218)
T ss_pred HHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCHHHHhhhhhh-----
Confidence 99998754322110 000 011235578899999888888777
Q ss_pred CChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeE
Q 000506 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421 (1458)
Q Consensus 342 LSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~i 421 (1458)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+ .+++.++|+.+++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LG-KCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865 24 4566677888899999999999999999
Q ss_pred EEEc
Q 000506 422 VYQG 425 (1458)
Q Consensus 422 v~~G 425 (1458)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=336.11 Aligned_cols=219 Identities=26% Similarity=0.385 Sum_probs=179.1
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC------ceeeEEEE
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YTEGDISI 929 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~------~~~G~i~i 929 (1458)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56788887663 246999999999999999999999999999999999987631 12899999
Q ss_pred CCeeCCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000506 930 SGYPKNQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGV 1005 (1458)
Q Consensus 930 ~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 1005 (1458)
+|.+... ..+++.++|++|++..++.+||+||+.+....... .....++..+.++++++.+++.+..++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV----- 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 9987642 23456789999998766679999999875321110 11111234456889999999987766654
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhh
Q 000506 1006 DGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 1075 (1458)
Q Consensus 1006 ~~LSgGqrqRl~ia~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~ 1075 (1458)
..||||||||++||++|+ .+|++|+|||||+|||+.+...+.+.|++++++ |+|||+++|+++ ++.+.+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 479999999999999999 599999999999999999999999999999876 899999999986 577889
Q ss_pred ceEEEEecCcEEEEeCCCC
Q 000506 1076 DELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1076 D~vlll~~gG~~~~~G~~~ 1094 (1458)
|++++|++ |++++.|+..
T Consensus 223 d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred CEEEEEEC-CeEEEecCHH
Confidence 99999985 7899998864
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=339.38 Aligned_cols=219 Identities=20% Similarity=0.309 Sum_probs=178.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++... .....+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 478999998774210 001359999999999999999999999999999999999876 4789999999875
Q ss_pred Cc--------ccccceEEEEccCCCC-CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 000506 935 NQ--------ATFARVSGYCEQNDIH-SPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPG 1004 (1458)
Q Consensus 935 ~~--------~~~~~~~gyv~Q~~~~-~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 1004 (1458)
.. ..+++.++|++|++.. ....||+||+.|..... ....++..+.++++++.++|. +..++.+
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~---- 148 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP---- 148 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh----
Confidence 31 2345679999999742 23469999998864321 223344456688899999994 5666554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEec
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKR 1083 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~ 1083 (1458)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++
T Consensus 149 -~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 149 -FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 479999999999999999999999999999999999999999999998764 899999999986 57789999999985
Q ss_pred CcEEEEeCCC
Q 000506 1084 GGQVIYAGPL 1093 (1458)
Q Consensus 1084 gG~~~~~G~~ 1093 (1458)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 788888875
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=324.23 Aligned_cols=198 Identities=24% Similarity=0.315 Sum_probs=168.4
Q ss_pred ecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc-ccccceEEEEccCCCCCCCCCHHHH
Q 000506 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ-ATFARVSGYCEQNDIHSPHVTVYES 961 (1458)
Q Consensus 883 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTV~e~ 961 (1458)
+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++... ...++.++|++|++.+++.+|++||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 4679999999999999999999999999999999876 478999999987643 2345779999999999999999999
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000506 962 LLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1458)
Q Consensus 962 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~ 1041 (1458)
+.+...... . ...+.++.++++++.++|.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 987543211 1 11223456788999999988777664 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCC
Q 000506 1042 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1042 ~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~ 1092 (1458)
++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |+++..|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999998765 899999999986 56778999999985 78887764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=331.39 Aligned_cols=219 Identities=21% Similarity=0.275 Sum_probs=176.9
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCC-CceeeEEEECCeeC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYTEGDISISGYPK 934 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~-~~~~G~i~i~g~~~ 934 (1458)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|++.
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56788887763 24699999999999999999999999999999999998642 24789999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1011 (1458)
.. ..+++.++|++|++.+++ .||+||+.+....+... ...+...++++++++.++|.+....... ...+.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCHH
Confidence 43 234567999999998887 69999998865433110 1123344567899999999532111111 124579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999986 57788999999985 7999988
Q ss_pred CC
Q 000506 1092 PL 1093 (1458)
Q Consensus 1092 ~~ 1093 (1458)
+.
T Consensus 224 ~~ 225 (246)
T PRK14269 224 ES 225 (246)
T ss_pred CH
Confidence 74
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=336.73 Aligned_cols=205 Identities=24% Similarity=0.353 Sum_probs=171.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc---ccceEEEecCCCC-CCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV---PQRTCAYISQNDL-HFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 258 (1458)
..+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++||+|++. .++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35999999999999999999999999999999999999998 999999999886432 2457999999973 6777
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
+||+||+.|+.+..+.. +.+ ....++.+++.+||++..|..+++
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~-- 140 (279)
T PRK13650 97 ATVEDDVAFGLENKGIP----------HEE------------------------MKERVNEALELVGMQDFKEREPAR-- 140 (279)
T ss_pred ccHHHHHHhhHHhCCCC----------HHH------------------------HHHHHHHHHHHCCCHhHhhCCccc--
Confidence 89999999864432211 000 011245688999999888888876
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++ ..+|+|++|++
T Consensus 141 ---LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tilivtH~~~~~-~~~dri~~l~~ 215 (279)
T PRK13650 141 ---LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ-MTVISITHDLDEV-ALSDRVLVMKN 215 (279)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHH-HhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999976434 4555566667777 58999999999
Q ss_pred CeEEEEcChhhHH
Q 000506 419 GQIVYQGPREKVL 431 (1458)
Q Consensus 419 G~iv~~G~~~~~~ 431 (1458)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~~~ 228 (279)
T PRK13650 216 GQVESTSTPRELF 228 (279)
T ss_pred CEEEEECCHHHHH
Confidence 9999999998764
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=333.16 Aligned_cols=224 Identities=22% Similarity=0.266 Sum_probs=182.0
Q ss_pred CCCCeEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCC---CceeeE
Q 000506 850 PFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYTEGD 926 (1458)
Q Consensus 850 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~ 926 (1458)
|..+..+.++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+.+|+
T Consensus 15 ~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 81 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81 (267)
T ss_pred CCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE
Confidence 33345689999998773 24699999999999999999999999999999999998753 147899
Q ss_pred EEECCeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 000506 927 ISISGYPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001 (1458)
Q Consensus 927 i~i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg 1001 (1458)
|.++|.+... ...++.++|++|++.+++ .||+||+.+..... . ....++.++.++++++.++|.+..+....
T Consensus 82 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 9999987642 134567999999988877 69999998864321 1 11233445678889999998643222222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEE
Q 000506 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1081 (1458)
Q Consensus 1002 ~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll 1081 (1458)
..+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.++|+++. ++.|||+++|+++ ++.+.||++++|
T Consensus 159 -~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l 235 (267)
T PRK14237 159 -KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFF 235 (267)
T ss_pred -CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEE
Confidence 2245899999999999999999999999999999999999999999999985 4799999999986 577899999999
Q ss_pred ecCcEEEEeCCC
Q 000506 1082 KRGGQVIYAGPL 1093 (1458)
Q Consensus 1082 ~~gG~~~~~G~~ 1093 (1458)
++ |++++.|+.
T Consensus 236 ~~-G~i~~~g~~ 246 (267)
T PRK14237 236 YL-GDLIEYDKT 246 (267)
T ss_pred EC-CEEEEeCCH
Confidence 85 799999885
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=338.11 Aligned_cols=219 Identities=23% Similarity=0.312 Sum_probs=181.8
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.+.++|+++.++... ....+.+|+|+|++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 478899998874210 0012469999999999999999999999999999999999976 4789999999886
Q ss_pred Cc----ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000506 935 NQ----ATFARVSGYCEQNDI-HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 935 ~~----~~~~~~~gyv~Q~~~-~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1009 (1458)
.. ...++.+||++|++. .+...||.|++.|..... ..+..+.+++++++++.+||.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 234678999999974 233469999998875432 2334455667899999999998888765 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1088 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~ 1088 (1458)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++. .+|++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 999999999987 454 4999999985 7899
Q ss_pred EeCCC
Q 000506 1089 YAGPL 1093 (1458)
Q Consensus 1089 ~~G~~ 1093 (1458)
+.|+.
T Consensus 224 ~~g~~ 228 (280)
T PRK13633 224 MEGTP 228 (280)
T ss_pred EecCH
Confidence 98875
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=340.64 Aligned_cols=207 Identities=26% Similarity=0.391 Sum_probs=169.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 259 (1458)
++||+++||+|++||-+||+|+|||||||+|++|.++.+ + +|+|.+||.++++... |+.||||||+..+|.+
T Consensus 365 ~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd- 439 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND- 439 (591)
T ss_pred CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcccccch-
Confidence 459999999999999999999999999999999999998 5 8999999999987653 6789999999999976
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
||.+|+.++..- ...+++.++|...+ ..|.+ ..|++..+|.||+...
T Consensus 440 TIl~NI~YGn~s-------------------------as~eeV~e~~k~a~-----~hd~i---~~l~~GY~T~VGerG~ 486 (591)
T KOG0057|consen 440 TILYNIKYGNPS-------------------------ASDEEVVEACKRAG-----LHDVI---SRLPDGYQTLVGERGL 486 (591)
T ss_pred hHHHHhhcCCCC-------------------------cCHHHHHHHHHHcC-----cHHHH---HhccccchhhHhhccc
Confidence 999999986321 11112222332221 12322 3488999999998322
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCC
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G 419 (1458)
-|||||||||++|||++.+|+|+++|||||.||+.|..++++.+.+.. .++|+|++.|.. .+...||+|++|++|
T Consensus 487 -~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l--~ll~~~DkI~~l~nG 561 (591)
T KOG0057|consen 487 -MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRL--DLLKDFDKIIVLDNG 561 (591)
T ss_pred -ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecc--hhHhcCCEEEEEECC
Confidence 289999999999999999999999999999999999999999999843 366777666543 577889999999999
Q ss_pred eEEEEcChhhHHH
Q 000506 420 QIVYQGPREKVLE 432 (1458)
Q Consensus 420 ~iv~~G~~~~~~~ 432 (1458)
++...|+.++++.
T Consensus 562 ~v~e~gth~ell~ 574 (591)
T KOG0057|consen 562 TVKEYGTHSELLA 574 (591)
T ss_pred eeEEeccHHHHhh
Confidence 9999999999875
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=374.81 Aligned_cols=135 Identities=21% Similarity=0.279 Sum_probs=108.7
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 000506 952 HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL-TNAMVGLPGVDGLSTEQRKRLTIAVELV---ANPS 1027 (1458)
Q Consensus 952 ~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~ia~aL~---~~p~ 1027 (1458)
.+...||.|+|.++..-......+.++..+.+ ++++.+||.+. .+..+ ..||||||||+.||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 44568999999887542221112233444456 58899999875 56554 479999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe-----cCcEEEEeCCCC
Q 000506 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-----RGGQVIYAGPLG 1094 (1458)
Q Consensus 1028 illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~-----~gG~~~~~G~~~ 1094 (1458)
+++|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|++++|. .||+++..|+..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999999888999999999986 34 8999999995 368999999864
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=328.73 Aligned_cols=212 Identities=28% Similarity=0.428 Sum_probs=180.5
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +..|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 4677777653 2469999999999999999999999999999999999876 478999999988643
Q ss_pred c-cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000506 937 A-TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKR 1015 (1458)
Q Consensus 937 ~-~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1015 (1458)
. ..++.++|++|++..++..|+.||+.+....+ ........+.++++++.+++.+..++.+ ..||+||+||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 23467999999999999999999998765432 1223334456789999999987777664 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1016 l~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998776 899999999986 57788999999985 789998885
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=305.03 Aligned_cols=208 Identities=27% Similarity=0.415 Sum_probs=172.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcccc---ceEEEecCCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ---RTCAYISQNDLHFGEM 259 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~l 259 (1458)
+.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|++.+||++++...+. +.-+.++|+..+-...
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 45999999999999999999999999999999999999998 99999999998876653 4568999997664456
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
||+|-+.++..-.+.+.. |.+ .....+.+|...++.+.+..-.-
T Consensus 91 tv~eVV~mGr~p~~~g~~-----------------~~e---------------~~~i~~~ala~~d~~~la~R~y~---- 134 (259)
T COG4559 91 TVQEVVQMGRIPHRSGRE-----------------PEE---------------DERIAAQALAATDLSGLAGRDYR---- 134 (259)
T ss_pred EHHHHHHhcccccccCCC-----------------chh---------------hHHHHHHHHHHcChhhhhccchh----
Confidence 999999997654322211 000 11234556777788777765443
Q ss_pred CCCChHHHHHHHHHHHHhc------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEE
Q 000506 340 RGVSGGQKKRVTTGEMLVG------PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~~------~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v 413 (1458)
.|||||||||.+||.|+. ++++||||||||.||......+++..|++++. + ..|+.+.|+..-+..++|+|
T Consensus 135 -~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g-~~V~~VLHDLNLAA~YaDri 211 (259)
T COG4559 135 -TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-G-GAVLAVLHDLNLAAQYADRI 211 (259)
T ss_pred -hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-C-CcEEEEEccchHHHHhhhee
Confidence 399999999999999963 55699999999999999999999999999985 3 56677889999999999999
Q ss_pred EEEcCCeEEEEcChhhHHH
Q 000506 414 ILLSEGQIVYQGPREKVLE 432 (1458)
Q Consensus 414 ~lL~~G~iv~~G~~~~~~~ 432 (1458)
++|++||++..|++++++.
T Consensus 212 vll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 212 VLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred eeeeCCeEeecCCHHHhcC
Confidence 9999999999999998853
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=347.12 Aligned_cols=206 Identities=31% Similarity=0.464 Sum_probs=169.9
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc---ccceEEEecCCCCCCCCCC
Q 000506 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV---PQRTCAYISQNDLHFGEMT 260 (1458)
Q Consensus 184 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 260 (1458)
++++|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||.+.++.. .+++++||+|++.+|+. |
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-T 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-T 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccccc-c
Confidence 6999999999999999999999999999999999999998 999999999988765 46889999999999977 9
Q ss_pred HHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCC
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 340 (1458)
+|||+.++.... .++++.+..+... +.+.+.-+...||.+|+ ..+
T Consensus 411 ireNi~l~~~~~----------------------s~e~i~~al~~a~------------l~~~v~~p~GLdt~ige-~G~ 455 (559)
T COG4988 411 IRENILLARPDA----------------------SDEEIIAALDQAG------------LLEFVPKPDGLDTVIGE-GGA 455 (559)
T ss_pred HHHHhhccCCcC----------------------CHHHHHHHHHHhc------------HHHhhcCCCcccchhcc-CCC
Confidence 999999853210 0112222222211 22222235677899987 567
Q ss_pred CCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCe
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 341 GLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~ 420 (1458)
||||||+|||++||||+.+++++++||||++||.+|...|.+.|.++++ ++|+++. +|. .+...-+|+|++|++|+
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~i-tHr-l~~~~~~D~I~vld~G~ 531 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVI-THR-LEDAADADRIVVLDNGR 531 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEE-EcC-hHHHhcCCEEEEecCCc
Confidence 8999999999999999999999999999999999999999999999986 4555554 443 35667789999999999
Q ss_pred EEEEcChhhHHH
Q 000506 421 IVYQGPREKVLE 432 (1458)
Q Consensus 421 iv~~G~~~~~~~ 432 (1458)
++++|.++++.+
T Consensus 532 l~~~g~~~~L~~ 543 (559)
T COG4988 532 LVEQGTHEELSE 543 (559)
T ss_pred eeccCCHHHHhh
Confidence 999999999854
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=363.60 Aligned_cols=123 Identities=24% Similarity=0.327 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CEEE
Q 000506 955 HVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL-TNAMVGLPGVDGLSTEQRKRLTIAVELVANP---SIIF 1030 (1458)
Q Consensus 955 ~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p---~ill 1030 (1458)
.+||.|++.|...+. . .....+.++.+||.+. .+..+ ..||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 378999988865432 1 1224678999999763 45443 479999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe-----cCcEEEEeCCC
Q 000506 1031 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-----RGGQVIYAGPL 1093 (1458)
Q Consensus 1031 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~-----~gG~~~~~G~~ 1093 (1458)
|||||+|||+.+...+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+.
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999975 446899999994 47999999985
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=337.61 Aligned_cols=217 Identities=24% Similarity=0.328 Sum_probs=181.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCc-eeeEEEECCee
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-TEGDISISGYP 933 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~-~~G~i~i~g~~ 933 (1458)
.++++|+++.++. ..+.+|+|||++|++||+++|+||||||||||+++|+|..++.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4789999887631 12459999999999999999999999999999999999876311 13999999998
Q ss_pred CCc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000506 934 KNQ---ATFARVSGYCEQNDI-HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 934 ~~~---~~~~~~~gyv~Q~~~-~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1009 (1458)
... ...++.+||++|++. .++..||+||+.|....+ ..+.++.+++++++++.++|.+..++.+ +.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 643 234567999999974 567899999998764322 2344555667899999999988777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1088 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~ 1088 (1458)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++ +.||++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 34 57999999985 7899
Q ss_pred EeCCC
Q 000506 1089 YAGPL 1093 (1458)
Q Consensus 1089 ~~G~~ 1093 (1458)
+.|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 99885
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=328.44 Aligned_cols=207 Identities=25% Similarity=0.381 Sum_probs=171.4
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc--cceEEEecCCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP--QRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~l 259 (1458)
++++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~ 89 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDL 89 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccC
Confidence 346999999999999999999999999999999999999988 9999999998754321 24799999999888899
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
||+||+.+.....+... .+ ....++.+++.+||++..++.+++
T Consensus 90 t~~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~--- 132 (236)
T TIGR03864 90 SVRQNLRYHAALHGLSR----------AE------------------------ARERIAALLARLGLAERADDKVRE--- 132 (236)
T ss_pred cHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCChhhhcCChhh---
Confidence 99999987543221100 00 001234578889999888888876
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCC
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G 419 (1458)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+. +++.++|+.+++.. +|++++|++|
T Consensus 133 --LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~-tiii~sH~~~~~~~-~d~i~~l~~G 208 (236)
T TIGR03864 133 --LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGL-SVLWATHLVDEIEA-DDRLVVLHRG 208 (236)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCC-EEEEEecChhhHhh-CCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999998754344 55666677777764 9999999999
Q ss_pred eEEEEcChhhHHH
Q 000506 420 QIVYQGPREKVLE 432 (1458)
Q Consensus 420 ~iv~~G~~~~~~~ 432 (1458)
++++.|+++++.+
T Consensus 209 ~i~~~~~~~~~~~ 221 (236)
T TIGR03864 209 RVLADGAAAELRG 221 (236)
T ss_pred eEEEeCCHHHHHH
Confidence 9999999887653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=295.04 Aligned_cols=199 Identities=27% Similarity=0.415 Sum_probs=173.4
Q ss_pred cccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcc------cc-cceEEEEccCC
Q 000506 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA------TF-ARVSGYCEQND 950 (1458)
Q Consensus 878 ~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~-~~~~gyv~Q~~ 950 (1458)
.+...||++|++.|++||-+||+|||||||||||-+|+|+.. +.+|+|.+.|++.... .+ .+.+|+|+|..
T Consensus 20 ~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF 97 (228)
T COG4181 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97 (228)
T ss_pred CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence 456789999999999999999999999999999999999987 4899999999986431 23 36799999999
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000506 951 IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIF 1030 (1458)
Q Consensus 951 ~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~ill 1030 (1458)
.+.|++|..||+...+.++..... +......+.|+.+||.+..+.+.+ +|||||+|||+||||++..|+|||
T Consensus 98 ~Lip~ltAlENV~lPleL~ge~~~---~~~~~A~~lL~~vGLg~Rl~HyP~-----qLSGGEQQRVAiARAfa~~P~vLf 169 (228)
T COG4181 98 HLIPNLTALENVALPLELRGESSA---DSRAGAKALLEAVGLGKRLTHYPA-----QLSGGEQQRVALARAFAGRPDVLF 169 (228)
T ss_pred eccccchhhhhccchhhhcCCccc---cHHHHHHHHHHHhCcccccccCcc-----ccCchHHHHHHHHHHhcCCCCEEe
Confidence 999999999999998888764322 223457889999999988877754 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1031 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1031 LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
.||||-+||..+...|.+++-.+.++ |.|.|++||||. +...|||.+-|.. |+++.
T Consensus 170 ADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 170 ADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceecc
Confidence 99999999999999999999988654 999999999985 6788999999985 67653
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=324.22 Aligned_cols=189 Identities=23% Similarity=0.375 Sum_probs=163.2
Q ss_pred ceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC---c----ccccceEEEEccCCCCC
Q 000506 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN---Q----ATFARVSGYCEQNDIHS 953 (1458)
Q Consensus 881 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~gyv~Q~~~~~ 953 (1458)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 469999999999999999999999999999999999876 47899999998742 1 12356799999999999
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000506 954 PHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDE 1033 (1458)
Q Consensus 954 ~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDE 1033 (1458)
+..||+||+.+....+ .....+..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999865432 2233444567889999999988777664 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEE
Q 000506 1034 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1081 (1458)
Q Consensus 1034 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll 1081 (1458)
||+|||+.+...+.+.|+++.++|.|||+++|++. ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999877999999999985 44689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=328.08 Aligned_cols=201 Identities=20% Similarity=0.295 Sum_probs=167.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-------cceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-------QRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 255 (1458)
+++|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999999987 9999999998765432 2469999999989
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 335 (1458)
++.+||+||+.+.....+... .+ .+..++.+++.+||++..++.++
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------AE------------------------INSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhCChh
Confidence 999999999988644221100 00 01123557889999888887776
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEE
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~l 415 (1458)
+ |||||||||+||++++.+|++++|||||+|||+.++.++.+.|+++++..+ ++++.++|+.+++.. +|++++
T Consensus 145 ~-----LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 145 E-----LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG-TAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHh-hCEEEE
Confidence 6 999999999999999999999999999999999999999999999875334 455556677777766 589999
Q ss_pred EcCCeEEEEcCh
Q 000506 416 LSEGQIVYQGPR 427 (1458)
Q Consensus 416 L~~G~iv~~G~~ 427 (1458)
|++|+++..|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999988864
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=330.40 Aligned_cols=209 Identities=26% Similarity=0.375 Sum_probs=175.9
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 477889988763 2458999999999999999999999999999999999876 4789999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSg 1010 (1458)
.. ...++.++|++|++.+++ .||+||+.+....+ . ...++++++++.+++. +..++. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999988776 69999998754321 1 1124578899999996 455554 347999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999774 999999999986 57788999999985 78888
Q ss_pred eCCC
Q 000506 1090 AGPL 1093 (1458)
Q Consensus 1090 ~G~~ 1093 (1458)
.|+.
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8875
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=350.48 Aligned_cols=213 Identities=26% Similarity=0.451 Sum_probs=180.5
Q ss_pred CCeEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECC
Q 000506 852 QPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG 931 (1458)
Q Consensus 852 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1458)
.++.+..+|++|.++. .+++++|+|++++||+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 3566778899998852 23799999999999999999999999999999999999874 799999999
Q ss_pred eeC---CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc------cccccC
Q 000506 932 YPK---NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT------NAMVGL 1002 (1458)
Q Consensus 932 ~~~---~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~------~~~vg~ 1002 (1458)
.+. +...++++++||+|++.+++ -|++||+.++. .+.++ +.+.++++..+|.+.. |+.+|.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDASD----EEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCCH----HHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 875 34568899999999999876 59999998852 12222 3467778877776544 555664
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
+.++|||||+|||++||||+.+++++++||||++||.++++.|++.|.++++ ++|||++||++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 4568999999999999999999999999999999999999999999999976 599999999974 566789999998
Q ss_pred cCcEEEEeCCC
Q 000506 1083 RGGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~gG~~~~~G~~ 1093 (1458)
+ |+++..|..
T Consensus 529 ~-G~l~~~g~~ 538 (559)
T COG4988 529 N-GRLVEQGTH 538 (559)
T ss_pred C-CceeccCCH
Confidence 5 799999875
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=327.32 Aligned_cols=199 Identities=28% Similarity=0.429 Sum_probs=172.8
Q ss_pred ecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcc-cccceEEEEccCCCCCCCCCHHHH
Q 000506 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA-TFARVSGYCEQNDIHSPHVTVYES 961 (1458)
Q Consensus 883 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTV~e~ 961 (1458)
+|+|+|++|+|||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999876 4789999999876532 234679999999999999999999
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000506 962 LLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1458)
Q Consensus 962 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~ 1041 (1458)
+.+..... .....+..+.++++++.++|.+..++.+ ..||||||||++||+||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 2233444556788999999988777765 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1042 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1042 ~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999998765 999999999986 57788999999985 788888875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=341.72 Aligned_cols=223 Identities=17% Similarity=0.214 Sum_probs=180.0
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCC--CceeeEEEECCe
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYTEGDISISGY 932 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~~~~G~i~i~g~ 932 (1458)
.++++|+++.+... .+...+|+|||++|++||++||+|+||||||||+++|+|..++ .+.+|+|.++|+
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 37888998877421 1235699999999999999999999999999999999998752 246899999998
Q ss_pred eCCcc---c----ccceEEEEccCCC--CCCCCCHHHHHHHHHhhhcCCC---CCHHHHHHHHHHHHHHcCCCccc---c
Q 000506 933 PKNQA---T----FARVSGYCEQNDI--HSPHVTVYESLLFSAWLRLSSD---IDSKTRKMFVDEVMDLVELEPLT---N 997 (1458)
Q Consensus 933 ~~~~~---~----~~~~~gyv~Q~~~--~~~~lTV~e~l~f~~~lr~~~~---~~~~~~~~~v~~~l~~l~L~~~~---~ 997 (1458)
++... . .++.++||+|++. +.|.+||.+++.+......... ....+.++.+.++++.+||.+.. +
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 153 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR 153 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 76431 1 1247999999986 5688999999976432111000 11233456789999999997532 3
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhc
Q 000506 998 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFD 1076 (1458)
Q Consensus 998 ~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D 1076 (1458)
.. +..|||||||||+||+||+.+|+||+|||||+|||+.++..++++|+++.++ |.|||++||+++ .+.+.+|
T Consensus 154 ~~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~d 227 (330)
T PRK15093 154 SF-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWAD 227 (330)
T ss_pred CC-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCC
Confidence 33 4589999999999999999999999999999999999999999999999875 999999999986 5778899
Q ss_pred eEEEEecCcEEEEeCCC
Q 000506 1077 ELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1077 ~vlll~~gG~~~~~G~~ 1093 (1458)
++++|.+ |++++.|+.
T Consensus 228 ri~vm~~-G~ive~g~~ 243 (330)
T PRK15093 228 KINVLYC-GQTVETAPS 243 (330)
T ss_pred EEEEEEC-CEEEEECCH
Confidence 9999985 799999985
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=334.09 Aligned_cols=215 Identities=22% Similarity=0.278 Sum_probs=176.7
Q ss_pred eEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCC---CceeeEEEEC
Q 000506 854 LSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYTEGDISIS 930 (1458)
Q Consensus 854 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 930 (1458)
..++++|+++.++ .+.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3589999998773 24699999999999999999999999999999999998642 1378999999
Q ss_pred CeeCC-----cccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000506 931 GYPKN-----QATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMVG 1001 (1458)
Q Consensus 931 g~~~~-----~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg 1001 (1458)
|.+.. ....++.++|++|++.+++ .||+||+.+.+..+. .. .+.++.++++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 98753 1234567999999998887 499999988764331 11 123455778888888743 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEE
Q 000506 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1081 (1458)
Q Consensus 1002 ~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll 1081 (1458)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|++. ++.+.||++++|
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999854 799999999986 688899999999
Q ss_pred ec----------CcEEEEeCCC
Q 000506 1082 KR----------GGQVIYAGPL 1093 (1458)
Q Consensus 1082 ~~----------gG~~~~~G~~ 1093 (1458)
++ +|++++.|+.
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred eccccccccccccceEEEeCCH
Confidence 85 2678888875
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=339.67 Aligned_cols=205 Identities=24% Similarity=0.354 Sum_probs=170.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCC-----------------------
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKE----------------------- 239 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----------------------- 239 (1458)
.++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|++...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999998 8999999876421
Q ss_pred ----ccccceEEEecCCC-CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchh
Q 000506 240 ----FVPQRTCAYISQND-LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTS 314 (1458)
Q Consensus 240 ----~~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~ 314 (1458)
...++.+|||+|++ ..+...||+||+.|+....+... .+ ..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~--------------------~~--------------~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK--------------------EE--------------AK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH--------------------HH--------------HH
Confidence 01245799999985 34445799999998654322110 00 01
Q ss_pred hHHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 000506 315 LATDYVLKLLGLD-ICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEI 393 (1458)
Q Consensus 315 ~~~~~il~~lgL~-~~~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~ 393 (1458)
..++.+++.+||+ +..++.+.+ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ . +
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~~~~-----LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g 215 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRSPFE-----LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-G 215 (305)
T ss_pred HHHHHHHHHcCCChhhhhCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-C
Confidence 1245578999996 677877776 999999999999999999999999999999999999999999999874 3 4
Q ss_pred eEEEEEeCChhHHHhccCEEEEEcCCeEEEEcChhhHH
Q 000506 394 TTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 394 t~ii~~~q~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++|+.++|+.+++.+++|+|++|++|+++++|+++++.
T Consensus 216 ~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 216 KTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 56677788899999999999999999999999998874
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=329.61 Aligned_cols=206 Identities=21% Similarity=0.339 Sum_probs=171.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc----cceEEEecCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP----QRTCAYISQNDLHFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 258 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 46999999999999999999999999999999999999987 9999999998765332 3569999999999998
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
+||+||+.+..+...... ..+ .....+.+++.+||++..++.++.
T Consensus 93 ~tv~enl~~~~~~~~~~~---------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-- 137 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDLS---------AEQ------------------------REDRANELMEEFHIEHLRDSMGQS-- 137 (241)
T ss_pred CcHHHHHhhhhhcccccC---------HHH------------------------HHHHHHHHHHHcCCHHHhhcchhh--
Confidence 999999987543211000 000 011234578889998877777766
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.++++++ .+ .+++.++|+.+++.+++|++++|++
T Consensus 138 ---LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tiii~sH~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 138 ---LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SG-LGVLITDHNVRETLAVCERAYIVSQ 212 (241)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEEcCHHHHHHhcCEEEEEeC
Confidence 999999999999999999999999999999999999999999999865 34 4555666778899999999999999
Q ss_pred CeEEEEcChhhHH
Q 000506 419 GQIVYQGPREKVL 431 (1458)
Q Consensus 419 G~iv~~G~~~~~~ 431 (1458)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988763
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=298.25 Aligned_cols=206 Identities=25% Similarity=0.348 Sum_probs=179.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCCCCCCCCHH
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVR 262 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 262 (1458)
..+|+|+|+.|.+||.++++||||||||||||+++|+.+|. .|+|.+||++++... ..-|.|+|++.++|-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCC--ccceeEeccCccchhhHHH
Confidence 55999999999999999999999999999999999999998 999999999987543 3458999999999999999
Q ss_pred HHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCCC
Q 000506 263 ETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV 342 (1458)
Q Consensus 263 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGL 342 (1458)
||++|+.+++|..+.. |+ ....+.+...||++..+..|-. |
T Consensus 93 dNvafgL~l~Gi~k~~-------R~---------------------------~~a~q~l~~VgL~~~~~~~i~q-----L 133 (259)
T COG4525 93 DNVAFGLQLRGIEKAQ-------RR---------------------------EIAHQMLALVGLEGAEHKYIWQ-----L 133 (259)
T ss_pred HHHHHHHHhcCCCHHH-------HH---------------------------HHHHHHHHHhCcccccccceEe-----e
Confidence 9999999998865321 11 1345678899999988887776 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEc--CCe
Q 000506 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS--EGQ 420 (1458)
Q Consensus 343 SGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~--~G~ 420 (1458)
||||||||.|||||..+|+.|+||||+.+||.-|+.++.+.|-++.+..++ -++.++|+.+|+.-+++++++|+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk-~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGK-QVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCC-eEEEEeccHHHHHhhhheeEEecCCCce
Confidence 999999999999999999999999999999999999999999998887654 55668899999999999999998 589
Q ss_pred EEEEcChhhHHHH
Q 000506 421 IVYQGPREKVLEF 433 (1458)
Q Consensus 421 iv~~G~~~~~~~~ 433 (1458)
|+..-+++-...|
T Consensus 213 vv~~~~~df~rR~ 225 (259)
T COG4525 213 VVERLPLDFARRY 225 (259)
T ss_pred eeEecCCCHHHHh
Confidence 9988777644443
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=339.94 Aligned_cols=216 Identities=21% Similarity=0.373 Sum_probs=174.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc-------------------ccc
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF-------------------VPQ 243 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------------------~~~ 243 (1458)
+++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 45999999999999999999999999999999999999998 99999999887532 124
Q ss_pred ceEEEecCCC--CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHH
Q 000506 244 RTCAYISQND--LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVL 321 (1458)
Q Consensus 244 ~~~~yv~Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il 321 (1458)
+.++||+|++ .+++ .||+||+.|+....+.. . . + ....++.++
T Consensus 116 ~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~-~---------~----------~--------------~~~~~~~~l 160 (320)
T PRK13631 116 RRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVK-K---------S----------E--------------AKKLAKFYL 160 (320)
T ss_pred hcEEEEEECchhcccc-chHHHHHHhhHHhcCCC-H---------H----------H--------------HHHHHHHHH
Confidence 6799999996 4665 59999998864322110 0 0 0 011234578
Q ss_pred HHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEe
Q 000506 322 KLLGLD-ICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLL 400 (1458)
Q Consensus 322 ~~lgL~-~~~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~ 400 (1458)
+.+||+ +..++.+.+ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++.+ .+ ++|++++
T Consensus 161 ~~~gL~~~~~~~~~~~-----LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g-~Tiiivt 233 (320)
T PRK13631 161 NKMGLDDSYLERSPFG-----LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NN-KTVFVIT 233 (320)
T ss_pred HHcCCChhHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CC-CEEEEEe
Confidence 899996 566666655 999999999999999999999999999999999999999999999865 24 5566677
Q ss_pred CChhHHHhccCEEEEEcCCeEEEEcChhhHHH---HHHhcCCCCCC
Q 000506 401 QPAPEAYDLFDNIILLSEGQIVYQGPREKVLE---FFEYMGFKCPD 443 (1458)
Q Consensus 401 q~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~---~F~~~G~~~p~ 443 (1458)
|+.+++.+++|+|++|++|+++..|+++++.+ .++..|+.+|.
T Consensus 234 Hd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 234 HTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred cCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 88888999999999999999999999987642 23445555443
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=324.79 Aligned_cols=197 Identities=29% Similarity=0.472 Sum_probs=167.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc--ccceEEEecCCCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV--PQRTCAYISQNDLHFGEMT 260 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 260 (1458)
.++|+|+|+++++| +++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 46999999999999 99999999999999999999999987 999999998775432 2467999999999999999
Q ss_pred HHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCC
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 340 (1458)
|+||+.+.....+... . + ....++.+++.+||++..++.+++
T Consensus 89 v~~~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~---- 130 (211)
T cd03264 89 VREFLDYIAWLKGIPS----------K----------E--------------VKARVDEVLELVNLGDRAKKKIGS---- 130 (211)
T ss_pred HHHHHHHHHHHhCCCH----------H----------H--------------HHHHHHHHHHHCCCHHHHhCchhh----
Confidence 9999988544321100 0 0 011235578899998888888876
Q ss_pred CCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCe
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 341 GLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~ 420 (1458)
|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++++ + ++++.++|+.+++.+++|++++|++|+
T Consensus 131 -LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 131 -LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGK 206 (211)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999864 4 566777888889999999999999999
Q ss_pred EEEEc
Q 000506 421 IVYQG 425 (1458)
Q Consensus 421 iv~~G 425 (1458)
+++.|
T Consensus 207 i~~~g 211 (211)
T cd03264 207 LVFEG 211 (211)
T ss_pred EEecC
Confidence 98765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=345.16 Aligned_cols=191 Identities=26% Similarity=0.409 Sum_probs=168.7
Q ss_pred cceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 000506 886 DVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ-------ATFARVSGYCEQNDIHSPHVTV 958 (1458)
Q Consensus 886 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTV 958 (1458)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.+|||+|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999876 478999999987532 1245789999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000506 959 YESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1458)
Q Consensus 959 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgL 1038 (1458)
+||+.|+.. ...++.++++++.++|.+..++.+ ..||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988632 112346889999999988877764 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCC
Q 000506 1039 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~ 1094 (1458)
|+.++..+++.|++++++ |+|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 214 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLE 214 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHH
Confidence 999999999999999876 899999999986 68889999999985 7899998863
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=333.28 Aligned_cols=224 Identities=21% Similarity=0.297 Sum_probs=181.1
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++++..+.. ....+.+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 3789999988742100 000112469999999999999999999999999999999999986 4789999999876
Q ss_pred Ccc---cccceEEEEccCCC--CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCC
Q 000506 935 NQA---TFARVSGYCEQNDI--HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVDGL 1008 (1458)
Q Consensus 935 ~~~---~~~~~~gyv~Q~~~--~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~L 1008 (1458)
... ..++.++|++|++. +.+.+||.|++.+...... .....+..+.++++++.++|. +..+..+ ..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhc
Confidence 421 22357999999975 5678899999988654321 223334456788999999994 5555543 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEE
Q 000506 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087 (1458)
Q Consensus 1009 SgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~ 1087 (1458)
|||||||++||++|+.+|+||+|||||+|||+.+...+.+.|++++++ |+|||+++|+++ ++.+.||++++|++ |++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999765 899999999986 57778999999985 788
Q ss_pred EEeCCC
Q 000506 1088 IYAGPL 1093 (1458)
Q Consensus 1088 ~~~G~~ 1093 (1458)
++.|+.
T Consensus 229 ~~~~~~ 234 (267)
T PRK15112 229 VERGST 234 (267)
T ss_pred EecCCH
Confidence 888874
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=345.63 Aligned_cols=194 Identities=25% Similarity=0.422 Sum_probs=170.3
Q ss_pred cceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 000506 886 DVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ-------ATFARVSGYCEQNDIHSPHVTV 958 (1458)
Q Consensus 886 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTV 958 (1458)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 9999999999999999999999999999999876 478999999987632 1245679999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000506 959 YESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1458)
Q Consensus 959 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgL 1038 (1458)
+||+.|+.... ...+.+++++++++.++|.+..++.+ ..|||||||||+|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999865321 12334556899999999998887765 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1039 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
|+.++..+++.|++++++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999876 899999999986 67788999999985 789998875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=345.99 Aligned_cols=195 Identities=27% Similarity=0.438 Sum_probs=170.4
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc-------cccceEEEecCCCCCCCCCC
Q 000506 188 DVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF-------VPQRTCAYISQNDLHFGEMT 260 (1458)
Q Consensus 188 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 260 (1458)
|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++||+|++.+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999988 99999999987531 12467999999999999999
Q ss_pred HHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCC
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 340 (1458)
|+||+.|+.+. . ....++.+++.+||++..++.+++
T Consensus 93 v~enl~~~~~~-----------~-----------------------------~~~~~~~~l~~~gl~~~~~~~~~~---- 128 (352)
T PRK11144 93 VRGNLRYGMAK-----------S-----------------------------MVAQFDKIVALLGIEPLLDRYPGS---- 128 (352)
T ss_pred HHHHHHhhhhh-----------h-----------------------------hHHHHHHHHHHcCCchhhhCCccc----
Confidence 99999875320 0 001235578999999888888876
Q ss_pred CCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCe
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 341 GLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~ 420 (1458)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+ ++++.++|+.+++.+++|++++|++|+
T Consensus 129 -LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 129 -LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREIN-IPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999976434 556667888899999999999999999
Q ss_pred EEEEcChhhHH
Q 000506 421 IVYQGPREKVL 431 (1458)
Q Consensus 421 iv~~G~~~~~~ 431 (1458)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999874
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=329.47 Aligned_cols=215 Identities=24% Similarity=0.288 Sum_probs=175.9
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcC--CC-ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 931 (1458)
.+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478899988763 2459999999999999999999999999999999999742 21 2489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMVGL 1002 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1002 (1458)
++... ..+++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87632 234567999999998877 899999988653321 1122334456788899998753 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
+..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 699999999986 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000506 1083 RGGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~gG~~~~~G~~ 1093 (1458)
+ |++++.|+.
T Consensus 222 ~-G~i~~~g~~ 231 (252)
T PRK14239 222 D-GDLIEYNDT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 789998875
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=328.86 Aligned_cols=215 Identities=22% Similarity=0.258 Sum_probs=177.4
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1458)
-+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 467889887763 245899999999999999999999999999999999986531 2689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMVGL 1002 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1002 (1458)
.+... ...++.++|++|++.+++ .|++||+.|....... ...++..++++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87632 134567999999998887 8999999886543211 123344556788999998853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
+..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 457999999999999999999999999999999999999999999999876 689999999986 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000506 1083 RGGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~gG~~~~~G~~ 1093 (1458)
+ |++++.|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14270 221 M-GDLIEFNKT 230 (251)
T ss_pred C-CeEEEeCCH
Confidence 5 789998875
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=328.99 Aligned_cols=203 Identities=29% Similarity=0.440 Sum_probs=167.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc----ccceEEEecCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV----PQRTCAYISQNDLHFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 258 (1458)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 46999999999999999999999999999999999999987 999999999876543 23569999999999998
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHc-CCcccccccccCc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLL-GLDICADTMVGDQ 337 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~l-gL~~~~dt~vg~~ 337 (1458)
+||+||+.++..... . + +. ....+.+++.+ +|.+..++.+..
T Consensus 95 ~tv~~~l~~~~~~~~---~-~---~~-----------------------------~~~~~~~l~~~~~l~~~~~~~~~~- 137 (237)
T PRK11614 95 MTVEENLAMGGFFAE---R-D---QF-----------------------------QERIKWVYELFPRLHERRIQRAGT- 137 (237)
T ss_pred CcHHHHHHHhhhccC---h-h---HH-----------------------------HHHHHHHHHHHHHHHHHHhCchhh-
Confidence 999999987532110 0 0 00 00122345555 466556666655
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEc
Q 000506 338 MRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417 (1458)
Q Consensus 338 ~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~ 417 (1458)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. +. +++.++|+.+++.+++|++++|+
T Consensus 138 ----LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~-tiii~sH~~~~~~~~~d~i~~l~ 211 (237)
T PRK11614 138 ----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GM-TIFLVEQNANQALKLADRGYVLE 211 (237)
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHC-CC-EEEEEeCcHHHHHhhCCEEEEEe
Confidence 9999999999999999999999999999999999999999999998753 44 45556788889999999999999
Q ss_pred CCeEEEEcChhhHH
Q 000506 418 EGQIVYQGPREKVL 431 (1458)
Q Consensus 418 ~G~iv~~G~~~~~~ 431 (1458)
+|++++.|+++++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=330.61 Aligned_cols=215 Identities=20% Similarity=0.279 Sum_probs=177.2
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCC--C-ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g 931 (1458)
.+.++|+++.+. .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 478999988763 24599999999999999999999999999999999998642 1 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL----TNAMVGL 1002 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 1002 (1458)
++... ...++.+||++|++.+++. ||+||+.+....+. ....++..+.++++++.+++.+. .+..
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--- 152 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--- 152 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCC---
Confidence 97632 2345679999999988875 99999988643321 11233445567889999998642 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
..+||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 153 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 228 (259)
T PRK14274 153 --ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY 228 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999986 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000506 1083 RGGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~gG~~~~~G~~ 1093 (1458)
+ |+++..|+.
T Consensus 229 ~-G~i~~~g~~ 238 (259)
T PRK14274 229 M-GELVECNDT 238 (259)
T ss_pred C-CEEEEECCH
Confidence 5 799998875
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=326.75 Aligned_cols=203 Identities=28% Similarity=0.376 Sum_probs=168.8
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc----cceEEEecCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP----QRTCAYISQNDLHFG 257 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 257 (1458)
++++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (230)
T TIGR03410 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFP 88 (230)
T ss_pred CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccC
Confidence 346999999999999999999999999999999999999987 9999999998754322 356999999999999
Q ss_pred CCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcC-CcccccccccC
Q 000506 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLG-LDICADTMVGD 336 (1458)
Q Consensus 258 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lg-L~~~~dt~vg~ 336 (1458)
.+||+||+.++....+.. . ....+.+++.++ +.+..|+.+++
T Consensus 89 ~~tv~~~l~~~~~~~~~~----------~---------------------------~~~~~~~l~~~~~l~~~~~~~~~~ 131 (230)
T TIGR03410 89 RLTVEENLLTGLAALPRR----------S---------------------------RKIPDEIYELFPVLKEMLGRRGGD 131 (230)
T ss_pred CCcHHHHHHHHHHhcCcc----------h---------------------------HHHHHHHHHHHHhHHHHhhCChhh
Confidence 999999998864321100 0 001233555665 55556666666
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
||||||||++||++|+.+|++++|||||+|||+.++.++.+.|+++++.. +++++.++|+.+++.+++|+|++|
T Consensus 132 -----LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l 205 (230)
T TIGR03410 132 -----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEG-GMAILLVEQYLDFARELADRYYVM 205 (230)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999987533 355666778888999999999999
Q ss_pred cCCeEEEEcChhhH
Q 000506 417 SEGQIVYQGPREKV 430 (1458)
Q Consensus 417 ~~G~iv~~G~~~~~ 430 (1458)
++|++++.|+.+++
T Consensus 206 ~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 206 ERGRVVASGAGDEL 219 (230)
T ss_pred ECCEEEEECCHHHc
Confidence 99999999998775
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=329.12 Aligned_cols=219 Identities=20% Similarity=0.278 Sum_probs=175.5
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECCe
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISGY 932 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~ 932 (1458)
-+++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 45777877653 246999999999999999999999999999999999986421 36899999998
Q ss_pred eCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000506 933 PKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDG 1007 (1458)
Q Consensus 933 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1007 (1458)
+... ...++.++|++|++.+++. ||+||+.+....+. .....+..++.++++++.+++.+....... ..+..
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhh
Confidence 7532 1345679999999988875 99999988643321 111223344567889999999753211111 12357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEE
Q 000506 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087 (1458)
Q Consensus 1008 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~ 1087 (1458)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i 226 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRI 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999985 4899999999986 57788999999986 789
Q ss_pred EEeCCC
Q 000506 1088 IYAGPL 1093 (1458)
Q Consensus 1088 ~~~G~~ 1093 (1458)
++.|+.
T Consensus 227 ~~~~~~ 232 (251)
T PRK14244 227 VEYNTT 232 (251)
T ss_pred EEeCCH
Confidence 888874
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=362.54 Aligned_cols=219 Identities=26% Similarity=0.360 Sum_probs=185.3
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|++++++ ++.+|+|+|++|++||++||+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 378899988763 2469999999999999999999999999999999999876 4789999999876
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000506 935 NQA----TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 935 ~~~----~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1009 (1458)
... ..++.+||++|++.+++.+||+|++.++...+.. ...+.++.+++++++++.++|.+..+..++ .||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 143 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELS 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCC
Confidence 421 1245799999999899999999999886432211 112233445668899999999988777654 799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++. ++.+.||++++|++ |+++.
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIA 221 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEE
Confidence 99999999999999999999999999999999999999999999878999999999986 57788999999985 78988
Q ss_pred eCCCCc
Q 000506 1090 AGPLGR 1095 (1458)
Q Consensus 1090 ~G~~~~ 1095 (1458)
.|+..+
T Consensus 222 ~~~~~~ 227 (501)
T PRK10762 222 EREVAD 227 (501)
T ss_pred ecCcCc
Confidence 888754
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=323.81 Aligned_cols=224 Identities=21% Similarity=0.311 Sum_probs=183.0
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcC-C--CceeeEEEECCe
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G--GYTEGDISISGY 932 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~-~--~~~~G~i~i~g~ 932 (1458)
++++|++.++... .+..++++||||++++||++||+|.|||||||+.++|.|..+ + ...+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 4677887776532 124579999999999999999999999999999999999876 2 256789999999
Q ss_pred eCC---cc---cc-cceEEEEccCCC--CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000506 933 PKN---QA---TF-ARVSGYCEQNDI--HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLP 1003 (1458)
Q Consensus 933 ~~~---~~---~~-~~~~gyv~Q~~~--~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 1003 (1458)
++. +. .+ -+.++|++|++. +.|..||.+.+.-......... ..++..+++.++|+.+|+.+-.... +.
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~--~~ 149 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRL--KS 149 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHH--hh
Confidence 642 22 12 257999999974 6799999888766554322111 3456677899999999998743222 12
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1004 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
.+.+|||||||||.||.||+.+|++|+.||||++||...+++|+++|+++.+ .|.|+|++|||+. -+.+.||||+||.
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY 228 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY 228 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE
Confidence 2568999999999999999999999999999999999999999999999986 5999999999987 4889999999998
Q ss_pred cCcEEEEeCCC
Q 000506 1083 RGGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~gG~~~~~G~~ 1093 (1458)
. |++++.|+.
T Consensus 229 a-G~iVE~g~~ 238 (316)
T COG0444 229 A-GRIVEEGPV 238 (316)
T ss_pred C-cEEEEeCCH
Confidence 5 899999996
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=324.81 Aligned_cols=204 Identities=33% Similarity=0.523 Sum_probs=166.9
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCcccEEEECCeecCCccccceEEEecCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD---DDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGE 258 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~---~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 258 (1458)
.+++|+|+|+++++||+++|+||||||||||+++|+|.++ |+ +|+|.++|+++.....++.++|++|++.+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 95 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcC
Confidence 3569999999999999999999999999999999999998 66 99999999987643446679999999999999
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHH-HHHHcCCcccccccccCc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDY-VLKLLGLDICADTMVGDQ 337 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~-il~~lgL~~~~dt~vg~~ 337 (1458)
+||+||+.|+..........+ . . .....+. .++.+++++..++.+++
T Consensus 96 ~tv~enl~~~~~~~~~~~~~~---~----~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~- 143 (226)
T cd03234 96 LTVRETLTYTAILRLPRKSSD---A----I------------------------RKKRVEDVLLRDLALTRIGGNLVKG- 143 (226)
T ss_pred CcHHHHHHHHHHhhcccccch---H----H------------------------HHHHHHHHHHHhhcchhhhcccccC-
Confidence 999999998654322110000 0 0 0001222 67888888777777766
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEc
Q 000506 338 MRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417 (1458)
Q Consensus 338 ~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~ 417 (1458)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+. +.|++++.|+...++.+++|++++|+
T Consensus 144 ----LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~ 218 (226)
T cd03234 144 ----ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLS 218 (226)
T ss_pred ----cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999999998753 55665555554468999999999999
Q ss_pred CCeEEEEc
Q 000506 418 EGQIVYQG 425 (1458)
Q Consensus 418 ~G~iv~~G 425 (1458)
+|+++++|
T Consensus 219 ~G~i~~~g 226 (226)
T cd03234 219 SGEIVYSG 226 (226)
T ss_pred CCEEEecC
Confidence 99999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=328.68 Aligned_cols=207 Identities=25% Similarity=0.379 Sum_probs=170.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD--LKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
..+|+|+|++|++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 45999999999999999999999999999999999999763 12389999999987542 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc----cccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD----ICAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 331 (1458)
++ +||+||+.+..+..+.... .+ ....++.+++.+||. +..+
T Consensus 94 ~~-~tv~e~l~~~~~~~~~~~~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 139 (247)
T TIGR00972 94 FP-MSIYDNIAYGPRLHGIKDK---------KE------------------------LDEIVEESLKKAALWDEVKDRLH 139 (247)
T ss_pred CC-CCHHHHHHhHHHhcCCCCH---------HH------------------------HHHHHHHHHHHcCCCcchhhHhh
Confidence 88 9999999886543211000 00 011234578889997 6666
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ + .+++.++|+.+++.+++|
T Consensus 140 ~~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d 211 (247)
T TIGR00972 140 DSALG-----LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISD 211 (247)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCC
Confidence 66665 999999999999999999999999999999999999999999999875 3 456667788889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++++|++|+++++|+++++.
T Consensus 212 ~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 212 RTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=327.89 Aligned_cols=215 Identities=22% Similarity=0.305 Sum_probs=176.3
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1458)
.++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 367889988763 235999999999999999999999999999999999975421 2589999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMVGL 1002 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1002 (1458)
.+... ...++.++|++|++.+++ .||+||+.+....+.. .+.++.++.++++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 234567999999988887 8999999986543211 123344567888899988753 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|++. ++.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 35799999999999999999999999999999999999999999999985 4899999999976 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000506 1083 RGGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~gG~~~~~G~~ 1093 (1458)
+ |+++..|+.
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 6 788888874
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=315.89 Aligned_cols=190 Identities=51% Similarity=0.871 Sum_probs=163.1
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCc--CCCceeeEEEECCe
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYTEGDISISGY 932 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~--~~~~~~G~i~i~g~ 932 (1458)
.++++|+++.++... ....+.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|+
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 478899998874210 001246999999999999999999999999999999999987 5 57899999999
Q ss_pred eCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000506 933 PKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQ 1012 (1458)
Q Consensus 933 ~~~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1012 (1458)
+......++.++|++|++.+++.+|++|++.+...+. .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8755455678999999999889999999997643110 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1013 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
|||++||+||+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999999877999999999986567788999999985 7887654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=323.23 Aligned_cols=194 Identities=26% Similarity=0.394 Sum_probs=163.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc------ccceEEEecCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV------PQRTCAYISQNDLHF 256 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 256 (1458)
.++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 46999999999999999999999999999999999999887 999999999876532 235799999999999
Q ss_pred CCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccC
Q 000506 257 GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD 336 (1458)
Q Consensus 257 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 336 (1458)
+.+||+||+.+.....+... + + ....++.+++.+||++..++.+.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~--~------------------~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 137 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKKE--R------------------E--------------IQRRVGAALRQVGLEHKADAFPEQ 137 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH--H------------------H--------------HHHHHHHHHHHcCChhhhhCChhh
Confidence 99999999988644321100 0 0 011235578899998877877776
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+. + ++++.++|+.+++.+++|++++|
T Consensus 138 -----LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~-~tii~~tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 138 -----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKR-G-TTVIVATHDLSLVDRVAHRVIIL 210 (214)
T ss_pred -----CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHhcCEEEEe
Confidence 9999999999999999999999999999999999999999999998652 4 45666777888999999999999
Q ss_pred cCCe
Q 000506 417 SEGQ 420 (1458)
Q Consensus 417 ~~G~ 420 (1458)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=324.70 Aligned_cols=201 Identities=26% Similarity=0.336 Sum_probs=164.1
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc------ccceEEEecCCC--CC
Q 000506 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV------PQRTCAYISQND--LH 255 (1458)
Q Consensus 184 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 255 (1458)
++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999999987 999999999876532 245799999998 46
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc-ccccccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD-ICADTMV 334 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~v 334 (1458)
++.+||+||+.+.....+..... + . .....+.+++.+||. +..+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~~---------~----------~-------------~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSKK---------E----------A-------------RKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcHH---------H----------H-------------HHHHHHHHHHHCCCChhHhhCCc
Confidence 67899999998764432110000 0 0 000113467888985 5667777
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEE
Q 000506 335 GDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNII 414 (1458)
Q Consensus 335 g~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~ 414 (1458)
++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|+|+
T Consensus 144 ~~-----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 144 HE-----LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELG-LTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEE
Confidence 66 999999999999999999999999999999999999999999999876434 455666777888999999999
Q ss_pred EEcCCeEEEEc
Q 000506 415 LLSEGQIVYQG 425 (1458)
Q Consensus 415 lL~~G~iv~~G 425 (1458)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=333.64 Aligned_cols=216 Identities=25% Similarity=0.307 Sum_probs=181.5
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++. .....+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 4789999988741 012358999999999999999999999999999999999986 4789999999876
Q ss_pred Cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 935 NQ---ATFARVSGYCEQNDI-HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~-~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
.. ...++.+||++|++. .++..||.||+.+..... ....++..++++++++.++|.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234678999999974 567789999998764322 2233444567899999999988777654 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++ ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999986 34 46999999986 78888
Q ss_pred eCCC
Q 000506 1090 AGPL 1093 (1458)
Q Consensus 1090 ~G~~ 1093 (1458)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=329.43 Aligned_cols=201 Identities=25% Similarity=0.335 Sum_probs=168.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCCCCCCCCHH
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVR 262 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 262 (1458)
+++|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++... ...++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHH
Confidence 46999999999999999999999999999999999999987 99999999987542 34689999999889989999
Q ss_pred HHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCCC
Q 000506 263 ETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV 342 (1458)
Q Consensus 263 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGL 342 (1458)
||+.+..+..+.. ..+ ....++.+++.+||++..++.+++ |
T Consensus 89 e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----L 129 (255)
T PRK11248 89 DNVAFGLQLAGVE----------KMQ------------------------RLEIAHQMLKKVGLEGAEKRYIWQ-----L 129 (255)
T ss_pred HHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCChhHhhCChhh-----C
Confidence 9998754322110 000 011235578899998888877766 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEc--CCe
Q 000506 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS--EGQ 420 (1458)
Q Consensus 343 SGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~--~G~ 420 (1458)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+ ++++.++|+.+++.+++|+|++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g-~tviivsH~~~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETG-KQVLLITHDIEEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEeCCCcE
Confidence 99999999999999999999999999999999999999999999865334 456667788889999999999998 599
Q ss_pred EEEEcChh
Q 000506 421 IVYQGPRE 428 (1458)
Q Consensus 421 iv~~G~~~ 428 (1458)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99988753
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=329.34 Aligned_cols=216 Identities=22% Similarity=0.278 Sum_probs=178.5
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC-c--eeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--TEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~--~~G~i~i~g 931 (1458)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478899988763 245899999999999999999999999999999999986532 2 489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMVGL 1002 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1002 (1458)
++... ...++.++|++|++.+++ .||+||+.+....+. ..+..+..+.++++++.+++.+ ..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87632 234567999999998887 899999988654332 1223344456788999998843 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
+..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 457999999999999999999999999999999999999999999999865 699999999987 6888999999997
Q ss_pred c----CcEEEEeCCC
Q 000506 1083 R----GGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~----gG~~~~~G~~ 1093 (1458)
+ .|++++.|+.
T Consensus 224 ~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 224 TDESRIGQMVEFGVT 238 (259)
T ss_pred ccCCCCceEEEeCCH
Confidence 3 4899999985
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=330.32 Aligned_cols=195 Identities=22% Similarity=0.286 Sum_probs=166.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCCCCCCCCHH
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVR 262 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 262 (1458)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~ 99 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVI 99 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHH
Confidence 35999999999999999999999999999999999999987 9999999987643 246799999999999889999
Q ss_pred HHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCCC
Q 000506 263 ETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV 342 (1458)
Q Consensus 263 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGL 342 (1458)
||+.+.... .. ...++.+++.+||++..+..+++ |
T Consensus 100 enl~~~~~~-----------~~-----------------------------~~~~~~~l~~~gl~~~~~~~~~~-----L 134 (257)
T PRK11247 100 DNVGLGLKG-----------QW-----------------------------RDAALQALAAVGLADRANEWPAA-----L 134 (257)
T ss_pred HHHHhcccc-----------hH-----------------------------HHHHHHHHHHcCChhHhcCChhh-----C
Confidence 999874210 00 00134478889998887877766 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeEE
Q 000506 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIV 422 (1458)
Q Consensus 343 SGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~iv 422 (1458)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+..+ .+++.++|+.+++.+++|+|++|++|+++
T Consensus 135 SgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~-~tviivsHd~~~~~~~~d~i~~l~~G~i~ 213 (257)
T PRK11247 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG-FTVLLVTHDVSEAVAMADRVLLIEEGKIG 213 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999865434 45566778888899999999999999999
Q ss_pred EEcChh
Q 000506 423 YQGPRE 428 (1458)
Q Consensus 423 ~~G~~~ 428 (1458)
++|+.+
T Consensus 214 ~~~~~~ 219 (257)
T PRK11247 214 LDLTVD 219 (257)
T ss_pred eecccc
Confidence 988754
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=336.33 Aligned_cols=205 Identities=21% Similarity=0.301 Sum_probs=170.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc-------cccceEEEecCCC--
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF-------VPQRTCAYISQND-- 253 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d-- 253 (1458)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.+|||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 45999999999999999999999999999999999999998 99999999987542 1245799999986
Q ss_pred CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc-ccccc
Q 000506 254 LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD-ICADT 332 (1458)
Q Consensus 254 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt 332 (1458)
.+++ .||.||+.|+....+.. +. + ....++.+++.+||+ +..++
T Consensus 97 ~l~~-~tv~e~i~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gL~~~~~~~ 141 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNFKMN----------LD----------E--------------VKNYAHRLLMDLGFSRDVMSQ 141 (286)
T ss_pred ccch-hhHHHHHHhhHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCChhhhhC
Confidence 4555 59999998864322110 00 0 011235578899997 67777
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCE
Q 000506 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412 (1458)
Q Consensus 333 ~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 412 (1458)
.+.+ |||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++.+. .+++|+.++|+.+++.+++|+
T Consensus 142 ~~~~-----LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dr 215 (286)
T PRK13646 142 SPFQ-----MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADE 215 (286)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCE
Confidence 7766 9999999999999999999999999999999999999999999999754 345666678888899999999
Q ss_pred EEEEcCCeEEEEcChhhHH
Q 000506 413 IILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 413 v~lL~~G~iv~~G~~~~~~ 431 (1458)
|++|++|++++.|+++++.
T Consensus 216 i~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 216 VIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=362.43 Aligned_cols=208 Identities=28% Similarity=0.380 Sum_probs=177.9
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++||+|+++. +++.+|+|+|++|+|||.+||+|+||||||||+++|+|..+ +.+|+|.+||++.
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEc
Confidence 6899999999842 12469999999999999999999999999999999999987 4799999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL-------TNAMVGLPG 1004 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 1004 (1458)
.+ ..+++.+|||+|++.+++ -|++||+.++. + .+ ++.++++++..++.+. .|+.+|..+
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G 586 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGG 586 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 53 457889999999999876 59999998742 1 22 2346777888777643 467777543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|+++|+++ ..+.+|++++|++
T Consensus 587 -~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~- 659 (686)
T TIGR03797 587 -GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA- 659 (686)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999886 589999999985 5677999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|+++..|+.
T Consensus 660 G~iv~~G~~ 668 (686)
T TIGR03797 660 GRVVQQGTY 668 (686)
T ss_pred CEEEEECCH
Confidence 799999985
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=321.94 Aligned_cols=191 Identities=27% Similarity=0.418 Sum_probs=164.3
Q ss_pred cceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc-------ccccceEEEEccCCCCCCCCCH
Q 000506 886 DVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ-------ATFARVSGYCEQNDIHSPHVTV 958 (1458)
Q Consensus 886 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTV 958 (1458)
|+|+++++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999876 478999999987531 1235679999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000506 959 YESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1458)
Q Consensus 959 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgL 1038 (1458)
+||+.+..... .....+++++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 22334456889999999987666654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1039 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
|+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999876 899999999986 57788999999985 7887654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=332.10 Aligned_cols=216 Identities=27% Similarity=0.396 Sum_probs=175.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCCCC-CCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDL-HFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 258 (1458)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 35999999999999999999999999999999999999998 9999999998865332 457999999973 6667
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
.||.||+.+..+..+.. .. + ....++.+++.+||++..++.+++
T Consensus 97 ~tv~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gL~~~~~~~~~~-- 140 (279)
T PRK13635 97 ATVQDDVAFGLENIGVP----------RE----------E--------------MVERVDQALRQVGMEDFLNREPHR-- 140 (279)
T ss_pred ccHHHHHhhhHhhCCCC----------HH----------H--------------HHHHHHHHHHHcCChhhhhCCccc--
Confidence 89999998864432110 00 0 011245688999999888888877
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++. .+|+|++|++
T Consensus 141 ---LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~-~tilivsH~~~~~~-~~d~i~~l~~ 215 (279)
T PRK13635 141 ---LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKG-ITVLSITHDLDEAA-QADRVIVMNK 215 (279)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC-CEEEEEecCHHHHH-cCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999976434 55555667777776 5999999999
Q ss_pred CeEEEEcChhhHHH---HHHhcCCCCC
Q 000506 419 GQIVYQGPREKVLE---FFEYMGFKCP 442 (1458)
Q Consensus 419 G~iv~~G~~~~~~~---~F~~~G~~~p 442 (1458)
|++++.|+.+++.. .+...|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 99999999887653 2334454443
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=326.80 Aligned_cols=218 Identities=23% Similarity=0.326 Sum_probs=176.7
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECCe
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISGY 932 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~ 932 (1458)
++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 67889988763 246899999999999999999999999999999999986521 26899999998
Q ss_pred eCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000506 933 PKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDG 1007 (1458)
Q Consensus 933 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1007 (1458)
+... ...++.++|++|++.+++ .||+||+.+...... ....+..++.++++++.+++.+..+... ...+.+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhh
Confidence 7642 234567999999998887 899999988653321 1122334456788899999864211111 122458
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEE
Q 000506 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087 (1458)
Q Consensus 1008 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~ 1087 (1458)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.+|++++|++ |++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i 223 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GEL 223 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 799999999986 57788999999986 788
Q ss_pred EEeCCC
Q 000506 1088 IYAGPL 1093 (1458)
Q Consensus 1088 ~~~G~~ 1093 (1458)
+..|+.
T Consensus 224 ~~~g~~ 229 (250)
T PRK14262 224 IEYGPT 229 (250)
T ss_pred EEecCH
Confidence 888875
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=322.65 Aligned_cols=195 Identities=24% Similarity=0.369 Sum_probs=164.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc------ccceEEEecCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV------PQRTCAYISQNDLHF 256 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 256 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 46999999999999999999999999999999999999987 999999999876432 235799999999999
Q ss_pred CCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccC
Q 000506 257 GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD 336 (1458)
Q Consensus 257 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 336 (1458)
+.+||+||+.+.....+.. .+ + ....++.+++.+||++..++.+++
T Consensus 91 ~~~t~~~~l~~~~~~~~~~--~~--------~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 136 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP--PR--------E------------------------IRKRVPAALELVGLSHKHRALPAE 136 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC--HH--------H------------------------HHHHHHHHHHHcCCHHHhhCChhh
Confidence 9999999998865432110 00 0 011234578889998888887766
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+. + ++++.++|+.+++.+++|++++|
T Consensus 137 -----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~-~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 137 -----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA-G-TTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred -----cCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998653 4 45666777788999999999999
Q ss_pred cCCeE
Q 000506 417 SEGQI 421 (1458)
Q Consensus 417 ~~G~i 421 (1458)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=343.75 Aligned_cols=199 Identities=27% Similarity=0.466 Sum_probs=171.0
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc-------cccceEEEecCCCCCCCCCC
Q 000506 188 DVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF-------VPQRTCAYISQNDLHFGEMT 260 (1458)
Q Consensus 188 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 260 (1458)
|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 999999999999999999999999999999999988 99999999987532 12467999999999999999
Q ss_pred HHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCC
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 340 (1458)
|+||+.|+.+... . .+ ....++.+++.+||++..|+.+.+
T Consensus 92 v~enl~~~~~~~~--~----------~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~---- 131 (354)
T TIGR02142 92 VRGNLRYGMKRAR--P----------SE------------------------RRISFERVIELLGIGHLLGRLPGR---- 131 (354)
T ss_pred HHHHHHHHhhccC--h----------hH------------------------HHHHHHHHHHHcCChhHhcCChhh----
Confidence 9999998643210 0 00 011235578999999888888877
Q ss_pred CCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCe
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 341 GLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~ 420 (1458)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+ ++++.++|+.+++..++|+|++|++|+
T Consensus 132 -LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 132 -LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFG-IPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999976434 456667788889999999999999999
Q ss_pred EEEEcChhhHH
Q 000506 421 IVYQGPREKVL 431 (1458)
Q Consensus 421 iv~~G~~~~~~ 431 (1458)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999998874
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=324.95 Aligned_cols=201 Identities=25% Similarity=0.327 Sum_probs=167.8
Q ss_pred ecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC--ceeeEEEECCeeCCcccc-cceEEEEccCCC--CCCCCC
Q 000506 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YTEGDISISGYPKNQATF-ARVSGYCEQNDI--HSPHVT 957 (1458)
Q Consensus 883 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~Q~~~--~~~~lT 957 (1458)
+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|++...... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999987631 168999999988654333 357999999984 557789
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC---ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000506 958 VYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE---PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP 1034 (1458)
Q Consensus 958 V~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~---~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEP 1034 (1458)
+.|++.+...... ...++.++.++++++.+++. +..+..+ ..|||||||||+||++|+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543221 11233456789999999997 3445443 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1035 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1035 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
|+|||+.+...+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999764 899999999986 57788999999985 789888875
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=335.03 Aligned_cols=215 Identities=19% Similarity=0.241 Sum_probs=173.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-------cceEEEecCCC-
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-------QRTCAYISQND- 253 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 253 (1458)
...+|+|||++|++||+++|+|+||||||||+++|+|+++|+...+|+|.++|+++..... ++.++||+|++
T Consensus 28 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 107 (330)
T PRK09473 28 DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM 107 (330)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCch
Confidence 3569999999999999999999999999999999999998742238999999998865432 24799999997
Q ss_pred -CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccc
Q 000506 254 -LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADT 332 (1458)
Q Consensus 254 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 332 (1458)
.+.|.+||.+++.+........ .+.+ ....+..+++.+||++..+.
T Consensus 108 ~~l~p~~~v~~~i~~~~~~~~~~---------~~~~------------------------~~~~~~~~L~~vgL~~~~~~ 154 (330)
T PRK09473 108 TSLNPYMRVGEQLMEVLMLHKGM---------SKAE------------------------AFEESVRMLDAVKMPEARKR 154 (330)
T ss_pred hhcCCCCCHHHHHHHHHHHhcCC---------CHHH------------------------HHHHHHHHHHHcCCCChHHH
Confidence 6889999999997654322100 0000 01123457888999753322
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCE
Q 000506 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412 (1458)
Q Consensus 333 ~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 412 (1458)
. +.....|||||||||+||+||+.+|++|++||||+|||..++.++.+.|+++.+.. +++++.++|+...+.+++|+
T Consensus 155 -~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-g~til~iTHdl~~~~~~~Dr 231 (330)
T PRK09473 155 -M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF-NTAIIMITHDLGVVAGICDK 231 (330)
T ss_pred -h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhCCE
Confidence 1 23445599999999999999999999999999999999999999999999997753 45677788899999999999
Q ss_pred EEEEcCCeEEEEcChhhHHH
Q 000506 413 IILLSEGQIVYQGPREKVLE 432 (1458)
Q Consensus 413 v~lL~~G~iv~~G~~~~~~~ 432 (1458)
|++|++|++++.|+.+++.+
T Consensus 232 i~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 232 VLVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=326.37 Aligned_cols=216 Identities=24% Similarity=0.287 Sum_probs=176.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCc---eeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---TEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~---~~G~i~i~g 931 (1458)
.+.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 477888887763 2469999999999999999999999999999999999875422 479999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMVGL 1002 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1002 (1458)
.+... ..+++.++|++|++.+++.+|+.||+.+...... ....++..+.++++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87642 2345679999999999999999999987643221 1122333456677777777642 33433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999986 5777899999998
Q ss_pred cCcEEEEeCCC
Q 000506 1083 RGGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~gG~~~~~G~~ 1093 (1458)
+ |++++.|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 789988875
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=326.84 Aligned_cols=219 Identities=22% Similarity=0.258 Sum_probs=176.4
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1458)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 467888887763 245999999999999999999999999999999999986532 3589999999
Q ss_pred eeCCc----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000506 932 YPKNQ----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDG 1007 (1458)
Q Consensus 932 ~~~~~----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1007 (1458)
.+... ...++.++|++|++.+++ .||.||+.+...... ....+...+.++++++.+++.+....... ..+..
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhh-cCccc
Confidence 87531 234567999999998887 899999987643221 11223344567888888887542211111 12357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEE
Q 000506 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087 (1458)
Q Consensus 1008 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~ 1087 (1458)
||||||||++||++|+.+|+||+|||||+|||+.++..+++.|+++++ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999975 589999999986 57888999999985 789
Q ss_pred EEeCCC
Q 000506 1088 IYAGPL 1093 (1458)
Q Consensus 1088 ~~~G~~ 1093 (1458)
+..|+.
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 988874
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=326.88 Aligned_cols=213 Identities=21% Similarity=0.287 Sum_probs=175.5
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC--ceeeEEEECCe
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YTEGDISISGY 932 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~--~~~G~i~i~g~ 932 (1458)
.++++|+++.++ +.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 578899988661 35899999999999999999999999999999999987631 17899999999
Q ss_pred eCCcccc-cceEEEEccCCC--CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCCCCC
Q 000506 933 PKNQATF-ARVSGYCEQNDI--HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP---LTNAMVGLPGVD 1006 (1458)
Q Consensus 933 ~~~~~~~-~~~~gyv~Q~~~--~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~vg~~~~~ 1006 (1458)
+...... ++.++|++|++. +.+..|+.+++.+.+.... ... ..+.++++++.++|.+ ..++. +.
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----PF 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----Cc
Confidence 8653333 357999999974 4466899998876433221 111 2356889999999976 33444 34
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~-G 217 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH-G 217 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998765 899999999986 57788999999985 7
Q ss_pred EEEEeCCC
Q 000506 1086 QVIYAGPL 1093 (1458)
Q Consensus 1086 ~~~~~G~~ 1093 (1458)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (254)
T PRK10418 218 RIVEQGDV 225 (254)
T ss_pred EEEEecCH
Confidence 89998875
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=362.28 Aligned_cols=219 Identities=26% Similarity=0.341 Sum_probs=184.3
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 478899988763 2469999999999999999999999999999999999876 4789999999876
Q ss_pred Cccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhh----cCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000506 935 NQAT----FARVSGYCEQNDIHSPHVTVYESLLFSAWLR----LSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD 1006 (1458)
Q Consensus 935 ~~~~----~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1006 (1458)
.... .++.+||++|++.+++.+||+|++.++.... .....+.++.+++++++++.+||.+..++.++
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~----- 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA----- 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----
Confidence 4321 2356999999999999999999998753211 00001233445678999999999887777654
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. .+.+.||++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999888999999999986 57788999999985 78
Q ss_pred EEEeCCCCc
Q 000506 1087 VIYAGPLGR 1095 (1458)
Q Consensus 1087 ~~~~G~~~~ 1095 (1458)
+++.|+..+
T Consensus 223 i~~~g~~~~ 231 (510)
T PRK09700 223 SVCSGMVSD 231 (510)
T ss_pred Eeeecchhh
Confidence 999988653
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=325.79 Aligned_cols=211 Identities=24% Similarity=0.382 Sum_probs=172.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc----cceEEEecCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP----QRTCAYISQNDLHFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 258 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 46999999999999999999999999999999999999988 9999999998754322 2469999999999999
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
+||+||+.+...... ..+.......+ . +....++.+++.+||++..++.+++
T Consensus 92 ~tv~~nl~~~~~~~~--~~~~~~~~~~~----------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (242)
T TIGR03411 92 LTVFENLELALPRDK--SVFASLFFRLS----------A--------------EEKDRIEEVLETIGLADEADRLAGL-- 143 (242)
T ss_pred CCHHHHHHHhhhccc--ccccccccccH----------H--------------HHHHHHHHHHHHcCCchhhcCChhh--
Confidence 999999988543110 00000000000 0 0112345688999999888888777
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ + .+++.++|+.+++.+++|+|++|++
T Consensus 144 ---LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 144 ---LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--K-HSVVVVEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--C-CEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999864 4 4566677888899999999999999
Q ss_pred CeEEEEcChhhH
Q 000506 419 GQIVYQGPREKV 430 (1458)
Q Consensus 419 G~iv~~G~~~~~ 430 (1458)
|+++++|+.+++
T Consensus 218 g~~~~~~~~~~~ 229 (242)
T TIGR03411 218 GSVLAEGSLDQV 229 (242)
T ss_pred CeEEeeCCHHHH
Confidence 999999998775
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=336.69 Aligned_cols=220 Identities=21% Similarity=0.279 Sum_probs=179.9
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCC---CceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1458)
.++++|+++.+.. +.+.+|+|+|++|++||++||+|||||||||||++|+|.... .+.+|+|.++|
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 5889999988741 124599999999999999999999999999999999998642 24689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCC-HHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDID-SKTRKMFVDEVMDLVELEPLTNAMVGLPGV 1005 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~-~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 1005 (1458)
+++.. ..+++.++||||++.+++ .|++||+.|+.... ... .+..++.++++++.++|.+..++.++. ..
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~ 223 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AG 223 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-Cc
Confidence 98742 235678999999998875 79999999864321 122 222344578889999886543344443 34
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1006 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|++++|++ |
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G 300 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-G 300 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 58999999999999999999999999999999999999999999999875 699999999986 46777999999985 7
Q ss_pred EEEEeCCC
Q 000506 1086 QVIYAGPL 1093 (1458)
Q Consensus 1086 ~~~~~G~~ 1093 (1458)
+++..|+.
T Consensus 301 ~i~e~g~~ 308 (329)
T PRK14257 301 WIEEAGET 308 (329)
T ss_pred EEEEeCCH
Confidence 99999986
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=315.82 Aligned_cols=180 Identities=49% Similarity=0.790 Sum_probs=156.2
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCcccEEEECCeecCCc--cccceEEEecCCCCC
Q 000506 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD---DDLKLTGKIKYCGHEFKEF--VPQRTCAYISQNDLH 255 (1458)
Q Consensus 181 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~---~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~ 255 (1458)
.++.+|+|+|+++++||+++|+|||||||||||++|+|.++ |+ +|+|.++|+++... ..++.++|++|++.+
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~ 94 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEeccccc
Confidence 44579999999999999999999999999999999999998 55 99999999987653 234679999999999
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 335 (1458)
++.+||+||+.++.+.. .++.+.
T Consensus 95 ~~~~tv~~~l~~~~~~~---------------------------------------------------------~~~~~~ 117 (202)
T cd03233 95 FPTLTVRETLDFALRCK---------------------------------------------------------GNEFVR 117 (202)
T ss_pred CCCCcHHHHHhhhhhhc---------------------------------------------------------cccchh
Confidence 99999999998743210 122333
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEE
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~l 415 (1458)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.++++++||+.+++.+++|++++
T Consensus 118 -----~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 118 -----GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred -----hCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 399999999999999999999999999999999999999999999997644567788888888899999999999
Q ss_pred EcCCeEEEEc
Q 000506 416 LSEGQIVYQG 425 (1458)
Q Consensus 416 L~~G~iv~~G 425 (1458)
|++|++++.|
T Consensus 193 l~~G~i~~~g 202 (202)
T cd03233 193 LYEGRQIYYG 202 (202)
T ss_pred EECCEEEecC
Confidence 9999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=328.15 Aligned_cols=215 Identities=25% Similarity=0.305 Sum_probs=176.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCee-
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP- 933 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~- 933 (1458)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 478899988763 2459999999999999999999999999999999999876 478999999987
Q ss_pred ----CCcc---c----ccceEEEEccCCC--CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 000506 934 ----KNQA---T----FARVSGYCEQNDI--HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-LTNAM 999 (1458)
Q Consensus 934 ----~~~~---~----~~~~~gyv~Q~~~--~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ 999 (1458)
.... . .++.++|++|++. +.+.+|+.|++.+...... .....+..+.++++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346999999974 5678899999976432111 1122334556889999999974 45554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceE
Q 000506 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1078 (1458)
Q Consensus 1000 vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~v 1078 (1458)
+ ..||||||||++|||||+.+|++|+|||||+|||+.+...+++.|++++++ |.|||+++|++. .+.+.+|++
T Consensus 149 ~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 P-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred C-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3 479999999999999999999999999999999999999999999998765 899999999986 466789999
Q ss_pred EEEecCcEEEEeCCC
Q 000506 1079 LLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1079 lll~~gG~~~~~G~~ 1093 (1458)
++|++ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 799998875
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=329.97 Aligned_cols=205 Identities=24% Similarity=0.318 Sum_probs=169.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc----------------cccceE
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF----------------VPQRTC 246 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~----------------~~~~~~ 246 (1458)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 46999999999999999999999999999999999999987 99999999887421 124579
Q ss_pred EEecCCCCCCCCCCHHHHHHHhhh-hccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcC
Q 000506 247 AYISQNDLHFGEMTVRETMDFSGR-CLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLG 325 (1458)
Q Consensus 247 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 325 (1458)
+|++|++.+++.+||+||+.++.. ..+.. +. + ....+..+++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------KQ----------E--------------ARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC----------HH----------H--------------HHHHHHHHHHHcC
Confidence 999999999999999999987432 11100 00 0 0112345788999
Q ss_pred Ccccc-cccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChh
Q 000506 326 LDICA-DTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAP 404 (1458)
Q Consensus 326 L~~~~-dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~ 404 (1458)
|.+.. +..+.. ||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+ .+|+.++|+.+
T Consensus 141 l~~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g-~tiiivsH~~~ 213 (257)
T PRK10619 141 IDERAQGKYPVH-----LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EG-KTMVVVTHEMG 213 (257)
T ss_pred CChhhhhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHH
Confidence 98753 655555 999999999999999999999999999999999999999999999875 24 55666778888
Q ss_pred HHHhccCEEEEEcCCeEEEEcChhhHH
Q 000506 405 EAYDLFDNIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 405 ~~~~~~D~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++.+++|+|++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 999999999999999999999988764
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=330.91 Aligned_cols=218 Identities=26% Similarity=0.427 Sum_probs=176.5
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 588999988773 12469999999999999999999999999999999999876 4789999999876
Q ss_pred CcccccceEEEEccCCCCC--CCCCHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000506 935 NQATFARVSGYCEQNDIHS--PHVTVYESLLFSAWLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~--~~lTV~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1011 (1458)
.....++.++|++|++.+. ...+++|++.++...... ........++.++++++.++|.+..++.++ .||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 4322234699999997653 234789988654211000 011122334567889999999887777654 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
||||++||+||+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 577889999766 4 7899988
Q ss_pred CCC
Q 000506 1092 PLG 1094 (1458)
Q Consensus 1092 ~~~ 1094 (1458)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 864
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=322.08 Aligned_cols=198 Identities=26% Similarity=0.372 Sum_probs=169.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCCCCCCCCH
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTV 261 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 261 (1458)
+.++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .+.++|++|++.+++.+||
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~ 87 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTA 87 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCH
Confidence 346999999999999999999999999999999999999987 999999998875422 3579999999988988999
Q ss_pred HHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCC
Q 000506 262 RETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRG 341 (1458)
Q Consensus 262 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 341 (1458)
+||+.+.....+.. ...+..+++.+||++..|..+++
T Consensus 88 ~~~~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~~~----- 124 (223)
T TIGR03740 88 RENLKVHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKKAKQ----- 124 (223)
T ss_pred HHHHHHHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhhHhh-----
Confidence 99998754322100 00134478889999888887776
Q ss_pred CChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeE
Q 000506 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421 (1458)
Q Consensus 342 LSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~i 421 (1458)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++ .+ .+++.++|+.+++.+++|++++|++|++
T Consensus 125 LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~~g~i 202 (223)
T TIGR03740 125 FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QG-ITVILSSHILSEVQQLADHIGIISEGVL 202 (223)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CC-CEEEEEcCCHHHHHHhcCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999999865 34 4556667778889999999999999999
Q ss_pred EEEcChh
Q 000506 422 VYQGPRE 428 (1458)
Q Consensus 422 v~~G~~~ 428 (1458)
++.|++.
T Consensus 203 ~~~~~~~ 209 (223)
T TIGR03740 203 GYQGKIN 209 (223)
T ss_pred EEecChh
Confidence 9999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=334.01 Aligned_cols=205 Identities=20% Similarity=0.307 Sum_probs=170.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc-------cccceEEEecCCCC-
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF-------VPQRTCAYISQNDL- 254 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~- 254 (1458)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 45999999999999999999999999999999999999998 99999999987532 12356999999962
Q ss_pred CCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc-cccccc
Q 000506 255 HFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD-ICADTM 333 (1458)
Q Consensus 255 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 333 (1458)
.+..+||+||+.|+.+..+.. +.+ ....++.+++.+||+ +..++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------EDE------------------------AKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCChhHhhCC
Confidence 333579999998864322110 000 011245578899997 577888
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEE
Q 000506 334 VGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413 (1458)
Q Consensus 334 vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v 413 (1458)
+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ . +++|+.++|+.+++.+++|+|
T Consensus 143 ~~~-----LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 PFE-----LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-A-GHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEE
Confidence 777 999999999999999999999999999999999999999999999864 2 456667888899999999999
Q ss_pred EEEcCCeEEEEcChhhHH
Q 000506 414 ILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 414 ~lL~~G~iv~~G~~~~~~ 431 (1458)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=336.21 Aligned_cols=208 Identities=20% Similarity=0.236 Sum_probs=175.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc------ccceEEEecCCC--C
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV------PQRTCAYISQND--L 254 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~ 254 (1458)
+++|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.... .++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 56999999999999999999999999999999999999887 999999999886542 245799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc-cccccc
Q 000506 255 HFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD-ICADTM 333 (1458)
Q Consensus 255 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 333 (1458)
+.|.+||.+++.+..+.... ..+.+ ....+..+++.+||+ ...++.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~---------~~~~~------------------------~~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTS---------LSAAE------------------------RREKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred cCCccCHHHHHHHHHHHccC---------CCHHH------------------------HHHHHHHHHHHCCCChHHhcCC
Confidence 88999999999775443210 00000 011345688999996 366777
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEE
Q 000506 334 VGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413 (1458)
Q Consensus 334 vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v 413 (1458)
+.+ |||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+.. +++++.++|+...+.+++|+|
T Consensus 152 p~~-----LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~-g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 152 PHM-----FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL-GLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred Ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEE
Confidence 666 99999999999999999999999999999999999999999999997653 456777889999999999999
Q ss_pred EEEcCCeEEEEcChhhHHH
Q 000506 414 ILLSEGQIVYQGPREKVLE 432 (1458)
Q Consensus 414 ~lL~~G~iv~~G~~~~~~~ 432 (1458)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999988753
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=342.61 Aligned_cols=209 Identities=24% Similarity=0.408 Sum_probs=176.4
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++|+||++++. +++++|+++||+|++||.+||+|+|||||||++++|.+... .+|+|+|||+++
T Consensus 351 ~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~di 415 (591)
T KOG0057|consen 351 SIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQDI 415 (591)
T ss_pred cEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCeeH
Confidence 599999999885 23569999999999999999999999999999999999775 689999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-------PLTNAMVGLPG 1004 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~~ 1004 (1458)
.. ..+|+.+||||||-.++. -||.+|+.|+. .+.+.+ +|-++.+..++. +-.+|.+|..|
T Consensus 416 k~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~e----eV~e~~k~a~~hd~i~~l~~GY~T~VGerG 485 (591)
T KOG0057|consen 416 KEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDE----EVVEACKRAGLHDVISRLPDGYQTLVGERG 485 (591)
T ss_pred hhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHH----HHHHHHHHcCcHHHHHhccccchhhHhhcc
Confidence 43 567899999999888774 69999999963 233333 344555555554 34566788655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
. -|||||||||+||||++.+|+|+++|||||.||+.+...+++.+.+. ..|+|+|++.|+. +..+.||+|++|++
T Consensus 486 ~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~n- 560 (591)
T KOG0057|consen 486 L-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLDN- 560 (591)
T ss_pred c-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEEC-
Confidence 3 69999999999999999999999999999999999999999999984 4689999999986 57889999999996
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|++...|+.
T Consensus 561 G~v~e~gth 569 (591)
T KOG0057|consen 561 GTVKEYGTH 569 (591)
T ss_pred CeeEEeccH
Confidence 688888875
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=320.66 Aligned_cols=211 Identities=25% Similarity=0.384 Sum_probs=176.7
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.+.. ..+.+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~---------~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGH---------GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccC---------CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 567888877631 0112569999999999999999999999999999999999876 47899999998764
Q ss_pred cc------cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000506 936 QA------TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 936 ~~------~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1009 (1458)
.. ..++.++|++|++.+++..|+.||+.+...... ....++..+.++++++.++|.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 21 245789999999999999999999998654321 1234445567899999999987777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEEEEecCcEE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~ 1087 (1458)
+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ +.+.+|++++|.+ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999876 4899999999975 4578999999985 554
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=327.44 Aligned_cols=206 Identities=25% Similarity=0.359 Sum_probs=172.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc----------------cccceE
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF----------------VPQRTC 246 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~----------------~~~~~~ 246 (1458)
.++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 46999999999999999999999999999999999999987 99999999987532 124579
Q ss_pred EEecCCCCCCCCCCHHHHHHHhhhh-ccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcC
Q 000506 247 AYISQNDLHFGEMTVRETMDFSGRC-LGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLG 325 (1458)
Q Consensus 247 ~yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lg 325 (1458)
+|++|++.+++.+||.||+.++... .+.. . .+ ....++.+++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMA----------R----------AE--------------AEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCC----------H----------HH--------------HHHHHHHHHHHcC
Confidence 9999999999999999999875321 0100 0 00 0012345788999
Q ss_pred CcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhH
Q 000506 326 LDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPE 405 (1458)
Q Consensus 326 L~~~~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~ 405 (1458)
|++..+..+.+ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+.. +++++.++|+.++
T Consensus 136 l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tiiivsH~~~~ 209 (252)
T TIGR03005 136 LADKADHMPAQ-----LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEH-DLTMLLVTHEMGF 209 (252)
T ss_pred ChhHhhcChhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHH
Confidence 98887777665 99999999999999999999999999999999999999999999987643 4566667788889
Q ss_pred HHhccCEEEEEcCCeEEEEcChhhHH
Q 000506 406 AYDLFDNIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 406 ~~~~~D~v~lL~~G~iv~~G~~~~~~ 431 (1458)
+.+++|++++|++|++++.|+.+++.
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999987763
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=332.77 Aligned_cols=207 Identities=28% Similarity=0.365 Sum_probs=172.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCC--c---cccceEEEecCCCC-CC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKE--F---VPQRTCAYISQNDL-HF 256 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--~---~~~~~~~yv~Q~d~-~~ 256 (1458)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 45999999999999999999999999999999999999987 9999999998742 1 12457999999963 33
Q ss_pred CCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccC
Q 000506 257 GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD 336 (1458)
Q Consensus 257 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 336 (1458)
...||+||+.+.....+.. ..+ ....++.+++.+||.+..|+.+++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~ 141 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLP----------EDE------------------------VRKRVDNALKRTGIEHLKDKPTHC 141 (283)
T ss_pred ccccHHHHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHCCChhhhhCCccc
Confidence 4579999998854322110 000 011245688999999888888777
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
||||||||++||+||+.+|++|+|||||+|||+.++.++.+.|+++++..+ ++|+.++|+.+++.+++|++++|
T Consensus 142 -----LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tillvsH~~~~~~~~~dri~~l 215 (283)
T PRK13636 142 -----LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG-LTIIIATHDIDIVPLYCDNVFVM 215 (283)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999976434 45666778888999999999999
Q ss_pred cCCeEEEEcChhhHHH
Q 000506 417 SEGQIVYQGPREKVLE 432 (1458)
Q Consensus 417 ~~G~iv~~G~~~~~~~ 432 (1458)
++|++++.|+.+++..
T Consensus 216 ~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 216 KEGRVILQGNPKEVFA 231 (283)
T ss_pred ECCEEEEeCCHHHHhc
Confidence 9999999999988753
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=328.83 Aligned_cols=219 Identities=24% Similarity=0.290 Sum_probs=177.8
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCC---CceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1458)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 25 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 588999998773 23589999999999999999999999999999999998652 13689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD 1006 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1006 (1458)
.+... ..+++.++|++|++.+++. ||+||+.+...... ....+..++.++++++.+++.+......+ ..+.
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 167 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLH-ENAF 167 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhh-CCcc
Confidence 87642 2346789999999988876 99999987654321 11222334568889999998642111111 1235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|+++ ++.+.+|++++|++ |+
T Consensus 168 ~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 244 (272)
T PRK14236 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-GK 244 (272)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999975 799999999986 57788999999985 78
Q ss_pred EEEeCCC
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~~~G~~ 1093 (1458)
++..|+.
T Consensus 245 i~~~g~~ 251 (272)
T PRK14236 245 LVEYGDT 251 (272)
T ss_pred EEecCCH
Confidence 9988875
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=313.05 Aligned_cols=195 Identities=24% Similarity=0.301 Sum_probs=147.9
Q ss_pred ccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHH
Q 000506 885 RDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLF 964 (1458)
Q Consensus 885 ~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f 964 (1458)
.==.++|..||+++++||||-||||+.++|+|..++ ++|+ .. .-.++|=||--.--...||++-|.-
T Consensus 358 ~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~ 424 (591)
T COG1245 358 EVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRS 424 (591)
T ss_pred EecCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Cc-------cceEeecceeecCCCCCcHHHHHHH
Confidence 333577888999999999999999999999998773 6665 11 1347888887655578899997754
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000506 965 SAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044 (1458)
Q Consensus 965 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~ 1044 (1458)
...-+... .-+..|+++-|.|.++.+..+. +|||||.|||+||.+|.++++|.+||||++.||++.+.
T Consensus 425 ~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~ 492 (591)
T COG1245 425 AIRSAFGS-------SYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRI 492 (591)
T ss_pred hhhhhccc-------chhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHH
Confidence 33221111 1234678899999999888764 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCC---CCcchHHHHHHHHhC
Q 000506 1045 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP---LGRQSQKLVEYFEAV 1107 (1458)
Q Consensus 1045 ~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~---~~~~~~~~~~~f~~~ 1107 (1458)
.+-+.||+.... ++|.+++-||.-+ +--..||+++.. |+---+|- +....+.+..|.+.+
T Consensus 493 ~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~--GePg~~g~a~~P~~mr~GMN~FLk~l 556 (591)
T COG1245 493 IVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE--GEPGKHGHASPPMSMREGMNRFLKNL 556 (591)
T ss_pred HHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe--cCCCccCcCCCCccHHHHHHHHHHHc
Confidence 999999998754 7899999999753 444679988885 33222221 112335566777776
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=322.11 Aligned_cols=196 Identities=25% Similarity=0.316 Sum_probs=165.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc------ccceEEEecCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV------PQRTCAYISQNDLHF 256 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 256 (1458)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 46999999999999999999999999999999999999987 999999999876432 245799999999888
Q ss_pred CCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccC
Q 000506 257 GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD 336 (1458)
Q Consensus 257 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 336 (1458)
+.+||+||+.+.....+... . + ....++.+++.+||.+..++.+++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 137 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASG----------D----------D--------------IRRRVSAALDKVGLLDKAKNFPIQ 137 (222)
T ss_pred ccccHHHHHHhHHHhcCCCH----------H----------H--------------HHHHHHHHHHHcCChhhhhCCchh
Confidence 89999999988643321100 0 0 001234578889998877777766
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. +++++.++|+.+++.+++|+|++|
T Consensus 138 -----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 138 -----LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV--GVTVLMATHDIGLISRRSYRMLTL 210 (222)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998653 356667788888999999999999
Q ss_pred cCCeEE
Q 000506 417 SEGQIV 422 (1458)
Q Consensus 417 ~~G~iv 422 (1458)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999975
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=319.37 Aligned_cols=201 Identities=25% Similarity=0.341 Sum_probs=183.1
Q ss_pred eecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc---c---cc-cceEEEEccCCCCCC
Q 000506 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---A---TF-ARVSGYCEQNDIHSP 954 (1458)
Q Consensus 882 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~---~~-~~~~gyv~Q~~~~~~ 954 (1458)
.-++|+|++|+.||++.|||-||||||||+++|.++.. ++.|+|+++|.++.. . .+ ++.++.|+|...++|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 45899999999999999999999999999999999887 589999999987532 1 23 357999999999999
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000506 955 HVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP 1034 (1458)
Q Consensus 955 ~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEP 1034 (1458)
+.||.||..|+..++ .++++++++++.+.|+.+||....+.++ ++||||+||||.+||||+.+|+||++|||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 999999999998776 5678999999999999999999999885 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCC
Q 000506 1035 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1035 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~ 1094 (1458)
+|.|||--+.++++-|.++.++ ++|||++|||.+ |.+..-|||.+|+ +|+++..|++.
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~ 250 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPE 250 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHH
Confidence 9999999999999999998755 899999999987 7889999999997 68999999874
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=328.37 Aligned_cols=206 Identities=29% Similarity=0.452 Sum_probs=171.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc---ccceEEEecCCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV---PQRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 259 (1458)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 46999999999999999999999999999999999999987 999999999875432 235699999998887889
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
||+||+.+.....+.. .+ + ....++.+++.+||++..++.+++
T Consensus 92 tv~e~l~~~~~~~~~~--~~--------~------------------------~~~~~~~~l~~~~l~~~~~~~~~~--- 134 (258)
T PRK13548 92 TVEEVVAMGRAPHGLS--RA--------E------------------------DDALVAAALAQVDLAHLAGRDYPQ--- 134 (258)
T ss_pred CHHHHHHhhhcccCCC--cH--------H------------------------HHHHHHHHHHHcCCHhHhcCCccc---
Confidence 9999998753211100 00 0 011234578899998888888877
Q ss_pred CCCChHHHHHHHHHHHHh------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEE
Q 000506 340 RGVSGGQKKRVTTGEMLV------GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~------~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v 413 (1458)
|||||||||+||+||+ .+|++++|||||+|||+.++..+.+.|+++++..+ .+|+.++|+.+++.+++|+|
T Consensus 135 --LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 135 --LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERG-LAVIVVLHDLNLAARYADRI 211 (258)
T ss_pred --CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhcCEE
Confidence 9999999999999999 59999999999999999999999999999874334 45666778888999999999
Q ss_pred EEEcCCeEEEEcChhhHH
Q 000506 414 ILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 414 ~lL~~G~iv~~G~~~~~~ 431 (1458)
++|++|++++.|+++++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999987764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=328.84 Aligned_cols=215 Identities=20% Similarity=0.284 Sum_probs=175.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcC--C-CceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1458)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 478999998763 2469999999999999999999999999999999999642 1 14689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMVGL 1002 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1002 (1458)
++... ...++.++|++|++.+++. ||+||+.+..... ........++.++++++.+++.+ ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYA--GERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87642 1345679999999988875 9999998764322 11122233456788888888852 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 357999999999999999999999999999999999999999999999865 689999999986 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000506 1083 RGGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~gG~~~~~G~~ 1093 (1458)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 5 789998875
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=334.62 Aligned_cols=211 Identities=20% Similarity=0.259 Sum_probs=171.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcccEEEECCeecCCccc-------cceEEEecCCC-
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDL-KLTGKIKYCGHEFKEFVP-------QRTCAYISQND- 253 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~-~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 253 (1458)
.++|+||||+|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 569999999999999999999999999999999999987421 138999999998865432 23699999997
Q ss_pred -CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc---c
Q 000506 254 -LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI---C 329 (1458)
Q Consensus 254 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~---~ 329 (1458)
.+.|.+||.+++....+..... .+.+ ....++.+++.+||++ .
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~---------~~~~------------------------~~~~~~~~L~~~gL~~~~~~ 146 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGG---------NKKT------------------------RRQRAIDLLNQVGIPDPASR 146 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCC---------CHHH------------------------HHHHHHHHHHHCCCCChHHH
Confidence 4788999999987654321000 0000 1123455789999974 3
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhc
Q 000506 330 ADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDL 409 (1458)
Q Consensus 330 ~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~ 409 (1458)
.+..+++ |||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+..+ .+++.++|+...+.++
T Consensus 147 l~~~p~~-----LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g-~til~iTHdl~~~~~~ 220 (326)
T PRK11022 147 LDVYPHQ-----LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN-MALVLITHDLALVAEA 220 (326)
T ss_pred HhCCchh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHh
Confidence 4555554 999999999999999999999999999999999999999999999976544 5677788889999999
Q ss_pred cCEEEEEcCCeEEEEcChhhHHH
Q 000506 410 FDNIILLSEGQIVYQGPREKVLE 432 (1458)
Q Consensus 410 ~D~v~lL~~G~iv~~G~~~~~~~ 432 (1458)
+|+|++|++|++++.|+.+++.+
T Consensus 221 adri~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 221 AHKIIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred CCEEEEEECCEEEEECCHHHHhh
Confidence 99999999999999999988753
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=326.88 Aligned_cols=221 Identities=21% Similarity=0.255 Sum_probs=179.2
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1458)
.++++|+++.+. +..+|+|+|+++++||+++|+|+||||||||+++|+|..++. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478999998773 235899999999999999999999999999999999987632 1479999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD 1006 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1006 (1458)
++... ...++.++|++|+..+++ .|++||+.+...... ..+..+..+.+.++++.+++.+..+...+ ..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIH-KSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcc
Confidence 87531 234567999999988887 899999987643221 11233334568899999998542211111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhceEEEEecC-
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRG- 1084 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hq~s~~i~~~~D~vlll~~g- 1084 (1458)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ +|+|||+++|++. ++.+.||++++|++|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999986 688899999999853
Q ss_pred ---cEEEEeCCC
Q 000506 1085 ---GQVIYAGPL 1093 (1458)
Q Consensus 1085 ---G~~~~~G~~ 1093 (1458)
|++++.|+.
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 799999886
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=326.66 Aligned_cols=219 Identities=24% Similarity=0.301 Sum_probs=179.5
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1458)
.+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 578999998874 246999999999999999999999999999999999987531 4689999999
Q ss_pred eeCCc----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000506 932 YPKNQ----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDG 1007 (1458)
Q Consensus 932 ~~~~~----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1007 (1458)
.+... ...++.++|++|++.+++ .||+||+.+..... ...+.++..+.+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 234677999999998887 89999998764322 112334444567888999998753221111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEE
Q 000506 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087 (1458)
Q Consensus 1008 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~ 1087 (1458)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999986 57788999999985 799
Q ss_pred EEeCCC
Q 000506 1088 IYAGPL 1093 (1458)
Q Consensus 1088 ~~~G~~ 1093 (1458)
+..|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 999885
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=331.26 Aligned_cols=204 Identities=26% Similarity=0.381 Sum_probs=169.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc----ccceEEEecCCCC-CCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV----PQRTCAYISQNDL-HFG 257 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 257 (1458)
.++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 45999999999999999999999999999999999999987 999999999875432 2457999999975 466
Q ss_pred CCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCc
Q 000506 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQ 337 (1458)
Q Consensus 258 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 337 (1458)
..||.||+.|..+..+.. +.+ ....++.+++.+||++..++.+++
T Consensus 92 ~~tv~enl~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~- 136 (274)
T PRK13644 92 GRTVEEDLAFGPENLCLP----------PIE------------------------IRKRVDRALAEIGLEKYRHRSPKT- 136 (274)
T ss_pred cchHHHHHHhhHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCHHHhcCCccc-
Confidence 789999998864322110 000 011235578899999888888876
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEc
Q 000506 338 MRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417 (1458)
Q Consensus 338 ~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~ 417 (1458)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+ ++|+.++|+.+++ ..+|+|++|+
T Consensus 137 ----LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g-~til~~tH~~~~~-~~~d~v~~l~ 209 (274)
T PRK13644 137 ----LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KG-KTIVYITHNLEEL-HDADRIIVMD 209 (274)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CC-CEEEEEecCHHHH-hhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999875 34 4556667777777 5699999999
Q ss_pred CCeEEEEcChhhHH
Q 000506 418 EGQIVYQGPREKVL 431 (1458)
Q Consensus 418 ~G~iv~~G~~~~~~ 431 (1458)
+|++++.|+.+++.
T Consensus 210 ~G~i~~~g~~~~~~ 223 (274)
T PRK13644 210 RGKIVLEGEPENVL 223 (274)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999988764
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=318.87 Aligned_cols=201 Identities=24% Similarity=0.317 Sum_probs=173.4
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.+.++|+++.++ ++.+|+++|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|++.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 478899987663 2459999999999999999999999999999999999876 4789999999876
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000506 935 NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014 (1458)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1014 (1458)
.....++.++|++|++.+++.+|++|++.+....+. .. ..+.++++++.++|.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543345679999999988888999999988654321 11 2345678999999988777665 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1015 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
|++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|+++ ++.+.+|+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999999888999999999986 6888999999986
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=319.60 Aligned_cols=194 Identities=29% Similarity=0.434 Sum_probs=161.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc---ccceEEEecCCCC-CCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV---PQRTCAYISQNDL-HFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 258 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 56999999999999999999999999999999999999987 999999999876432 2457999999974 4667
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
+||+||+.+.....+... . + .....+.+++.+||++..++.+++
T Consensus 91 ~t~~~~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~-- 134 (211)
T cd03225 91 PTVEEEVAFGLENLGLPE----------E----------E--------------IEERVEEALELVGLEGLRDRSPFT-- 134 (211)
T ss_pred CcHHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCcHhhhcCCccc--
Confidence 899999987543211100 0 0 011234578889998877877766
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. + ++++.++|+.+++.+++|+|++|++
T Consensus 135 ---LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~-~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 135 ---LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-G-KTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-C-CEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999998763 4 5566677888899999999999999
Q ss_pred Ce
Q 000506 419 GQ 420 (1458)
Q Consensus 419 G~ 420 (1458)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=327.80 Aligned_cols=205 Identities=28% Similarity=0.372 Sum_probs=168.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc---ccceEEEecCCCC-CCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV---PQRTCAYISQNDL-HFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 258 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 45899999999999999999999999999999999999987 999999999886432 2467999999974 5677
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
+||+||+.+.....+... . + ....++.+++.+||++..++.++.
T Consensus 99 ~tv~enl~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~-- 142 (271)
T PRK13632 99 ATVEDDIAFGLENKKVPP----------K----------K--------------MKDIIDDLAKKVGMEDYLDKEPQN-- 142 (271)
T ss_pred ccHHHHHHhHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCCHHHhhCCccc--
Confidence 899999987643211100 0 0 011245578899999888888776
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+. +++.++|+.+++. .+|++++|++
T Consensus 143 ---LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~-tiii~sH~~~~~~-~~d~v~~l~~ 217 (271)
T PRK13632 143 ---LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKK-TLISITHDMDEAI-LADKVIVFSE 217 (271)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCc-EEEEEEechhHHh-hCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999998764234 4445556666664 7999999999
Q ss_pred CeEEEEcChhhHH
Q 000506 419 GQIVYQGPREKVL 431 (1458)
Q Consensus 419 G~iv~~G~~~~~~ 431 (1458)
|+++..|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999987764
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=320.29 Aligned_cols=194 Identities=27% Similarity=0.403 Sum_probs=162.1
Q ss_pred ccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcccccceEEEEccCCCCCCCC
Q 000506 877 EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHV 956 (1458)
Q Consensus 877 ~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~l 956 (1458)
.++.+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|++... ..+...+.+.+
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~ 99 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPEL 99 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCC
Confidence 3445679999999999999999999999999999999999876 478999999986421 11123345779
Q ss_pred CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000506 957 TVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1458)
Q Consensus 957 TV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTs 1036 (1458)
||+||+.+....+ ....++.++.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+
T Consensus 100 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~ 171 (224)
T cd03220 100 TGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLA 171 (224)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999998865432 1233444556888999999988777765 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1037 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1037 gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 172 gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 172 VGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999999877899999999986 57778999999985 7887654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=327.49 Aligned_cols=221 Identities=20% Similarity=0.290 Sum_probs=174.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc----cceEEEecCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP----QRTCAYISQNDLHFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 258 (1458)
+++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 46999999999999999999999999999999999999987 9999999998765321 2358999999999999
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
+||+||+.++....... +......... ...+.. .+....++..++.+||++..++.+++
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~~~~---~~~~~~-------------~~~~~~~~~~l~~~gl~~~~~~~~~~-- 153 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLLKTP---AFRRAE-------------SEALDRAATWLERVGLLEHANRQAGN-- 153 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhcccc---ccccch-------------hHHHHHHHHHHHhCChhhhhhCChhh--
Confidence 99999999854311000 0000000000 000000 00112245578899998888888777
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|++++|++
T Consensus 154 ---LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 154 ---LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHN-VTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcC-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999876434 5666677888899999999999999
Q ss_pred CeEEEEcChhhHH
Q 000506 419 GQIVYQGPREKVL 431 (1458)
Q Consensus 419 G~iv~~G~~~~~~ 431 (1458)
|++++.|+++++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999987763
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=328.47 Aligned_cols=213 Identities=23% Similarity=0.310 Sum_probs=175.1
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCC---CceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1458)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 588999988763 24599999999999999999999999999999999998652 13689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMVGL 1002 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1002 (1458)
.+... ...++.++|++|++.+++. ||+||+.+....+. ... ...+.++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87532 2346789999999988775 99999988654331 122 23456889999999853 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEE-EE
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL-LM 1081 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vl-ll 1081 (1458)
+..||||||||++||++|+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|+++ +|
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 357999999999999999999999999999999999999999999999976 489999999986 5777899976 45
Q ss_pred ecCcEEEEeCCC
Q 000506 1082 KRGGQVIYAGPL 1093 (1458)
Q Consensus 1082 ~~gG~~~~~G~~ 1093 (1458)
+ +|+++..|+.
T Consensus 254 ~-~G~i~~~g~~ 264 (285)
T PRK14254 254 T-GGELVEFDDT 264 (285)
T ss_pred e-CCEEEEeCCH
Confidence 6 5789888874
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=320.39 Aligned_cols=200 Identities=29% Similarity=0.425 Sum_probs=161.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCCCC--CCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHF--GEMT 260 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lT 260 (1458)
.++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+. ..+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999999988 9999999987642 346799999997653 3479
Q ss_pred HHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCC
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 340 (1458)
|+||+.+....... .... ...+ .....+.+++.+||++..++.+++
T Consensus 87 v~e~l~~~~~~~~~--~~~~--------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~---- 132 (213)
T cd03235 87 VRDVVLMGLYGHKG--LFRR--------------LSKA--------------DKAKVDEALERVGLSELADRQIGE---- 132 (213)
T ss_pred HHHHHHhccccccc--cccC--------------CCHH--------------HHHHHHHHHHHcCCHHHHhCCccc----
Confidence 99999875321100 0000 0000 011245578899998878888776
Q ss_pred CCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCe
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 341 GLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~ 420 (1458)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+ ++++.++|+.+++.+++|++++|++|
T Consensus 133 -LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 133 -LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EG-MTILVVTHDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHHHHHHhcCEEEEEcCc-
Confidence 999999999999999999999999999999999999999999999875 34 55666778888999999999999876
Q ss_pred EEEEc
Q 000506 421 IVYQG 425 (1458)
Q Consensus 421 iv~~G 425 (1458)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 65554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=325.65 Aligned_cols=209 Identities=24% Similarity=0.336 Sum_probs=168.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCeecCCcc---ccceEEEecCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD--LKLTGKIKYCGHEFKEFV---PQRTCAYISQNDLHFG 257 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~ 257 (1458)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 45999999999999999999999999999999999998741 123899999999875432 2457999999998888
Q ss_pred CCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc----ccccc
Q 000506 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI----CADTM 333 (1458)
Q Consensus 258 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~dt~ 333 (1458)
.+||+||+.++.+....... +. + ....+..+++.+||.+ ..|+.
T Consensus 96 ~~tv~enl~~~~~~~~~~~~--------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVKS--------KK----------E--------------LQERVRWALEKAQLWDEVKDRLDAP 143 (250)
T ss_pred CCcHHHHHHHHHHhccccCC--------HH----------H--------------HHHHHHHHHHHcCCCcchhhhhcCC
Confidence 99999999886432211000 00 0 0112345788888853 34555
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEE
Q 000506 334 VGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413 (1458)
Q Consensus 334 vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v 413 (1458)
+.+ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++++.++|+.+++.+++|++
T Consensus 144 ~~~-----LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i 215 (250)
T PRK14247 144 AGK-----LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--D-MTIVLVTHFPQQAARISDYV 215 (250)
T ss_pred ccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhcCEE
Confidence 555 999999999999999999999999999999999999999999999853 4 45666778888899999999
Q ss_pred EEEcCCeEEEEcChhhHH
Q 000506 414 ILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 414 ~lL~~G~iv~~G~~~~~~ 431 (1458)
++|++|+++..|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 216 AFLYKGQIVEWGPTREVF 233 (250)
T ss_pred EEEECCeEEEECCHHHHH
Confidence 999999999999988764
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=320.34 Aligned_cols=196 Identities=21% Similarity=0.339 Sum_probs=161.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-------cceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-------QRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 255 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999987 9999999998765322 2469999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 335 (1458)
++.+||+||+.+........ +.+ ....+..+++.+||++..++.++
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS----------VKE------------------------AKERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhhCChh
Confidence 98999999998854321110 000 01123457889999888887776
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEE
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~l 415 (1458)
. |||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..+. +++.++|+.+++. .+|+|++
T Consensus 141 ~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~-tii~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 141 E-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNT-SFLVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred h-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHHh-hcCEEEE
Confidence 6 9999999999999999999999999999999999999999999998764344 4555666677775 4799999
Q ss_pred EcCCeEE
Q 000506 416 LSEGQIV 422 (1458)
Q Consensus 416 L~~G~iv 422 (1458)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=330.55 Aligned_cols=215 Identities=20% Similarity=0.300 Sum_probs=175.8
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcC--C-CceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1458)
.+.++|+++.+. .+.+|+|+|++|++||+++|+|||||||||||++|+|... + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 588999988763 2358999999999999999999999999999999999743 1 12689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE----PLTNAMVGL 1002 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 1002 (1458)
.+... ...++.++|++|++.+++. ||.||+.+....+.. .+.+..++.+.++++.+++. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1245679999999988875 999999986543211 12233345678889988874 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
+..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000506 1083 RGGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~gG~~~~~G~~ 1093 (1458)
+ |+++..|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 5 789998875
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=325.16 Aligned_cols=204 Identities=26% Similarity=0.341 Sum_probs=169.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCC------c---cccceEEEecCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKE------F---VPQRTCAYISQND 253 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------~---~~~~~~~yv~Q~d 253 (1458)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 45999999999999999999999999999999999999987 9999999997631 0 1245799999999
Q ss_pred CCCCCCCHHHHHHHhh-hhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccc
Q 000506 254 LHFGEMTVRETMDFSG-RCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADT 332 (1458)
Q Consensus 254 ~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 332 (1458)
.+++.+||+||+.+.. ...+.. .. + ....++.+++.+||++..++
T Consensus 92 ~~~~~~tv~e~i~~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gl~~~~~~ 137 (242)
T PRK11124 92 NLWPHLTVQQNLIEAPCRVLGLS----------KD----------Q--------------ALARAEKLLERLRLKPYADR 137 (242)
T ss_pred cccCCCcHHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCChhhhhC
Confidence 9999999999997532 111110 00 0 01123557889999888888
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCE
Q 000506 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412 (1458)
Q Consensus 333 ~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 412 (1458)
.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+ ++++.++|+.+++.+++|+
T Consensus 138 ~~~~-----LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~sh~~~~~~~~~d~ 210 (242)
T PRK11124 138 FPLH-----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TG-ITQVIVTHEVEVARKTASR 210 (242)
T ss_pred Chhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhcCE
Confidence 7766 999999999999999999999999999999999999999999999864 34 4566677888899999999
Q ss_pred EEEEcCCeEEEEcChhhH
Q 000506 413 IILLSEGQIVYQGPREKV 430 (1458)
Q Consensus 413 v~lL~~G~iv~~G~~~~~ 430 (1458)
+++|.+|+++++|+++++
T Consensus 211 i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 211 VVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999998764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=357.75 Aligned_cols=220 Identities=21% Similarity=0.328 Sum_probs=182.4
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.++ ++.+|+|||+++++||+++|+||||||||||+++|+|..++++.+|+|.++|++..
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 56788887763 24699999999999999999999999999999999998764236899999998764
Q ss_pred ccc----ccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCC
Q 000506 936 QAT----FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSS-DIDSKTRKMFVDEVMDLVELEPLT-NAMVGLPGVDGLS 1009 (1458)
Q Consensus 936 ~~~----~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LS 1009 (1458)
... .++.+|||+|++.+++.+||+|++.+....+... ....++.+++++++++.+++.+.. +..+ ..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCC
Confidence 321 2356999999999899999999998864332111 122334456788999999998654 3443 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
|||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+.||++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999986 57788999999986 78888
Q ss_pred eCCCCc
Q 000506 1090 AGPLGR 1095 (1458)
Q Consensus 1090 ~G~~~~ 1095 (1458)
.|+...
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 887653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=327.32 Aligned_cols=206 Identities=23% Similarity=0.323 Sum_probs=166.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDL--KLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
+++|+|+|++|++||+++|+|||||||||||++|+|+++|.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 459999999999999999999999999999999999987510 1289999999987532 124569999999888
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc----cccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD----ICAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 331 (1458)
++ +||+||+.|..+..+... .+ ....++.+++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGANK----------KD------------------------LDGVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCCcchhhhhc
Confidence 87 899999998654322100 00 001234567788873 3456
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ + ++|+.++|+.+++.+++|
T Consensus 150 ~~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~-~tiiivsH~~~~~~~~~d 221 (258)
T PRK14268 150 SPALS-----LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--D-YTIVIVTHNMQQAARISD 221 (258)
T ss_pred CChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHHhCC
Confidence 66555 999999999999999999999999999999999999999999999853 4 556667788889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
+|++|++|++++.|+++++.
T Consensus 222 ~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 222 YTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=324.83 Aligned_cols=215 Identities=23% Similarity=0.317 Sum_probs=175.8
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCC--C-ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g 931 (1458)
.+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478899988773 24699999999999999999999999999999999998642 1 3689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMVGL 1002 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1002 (1458)
++... ...++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87532 234567999999998776 799999987643321 1122333456788999999852 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 457999999999999999999999999999999999999999999999854 799999999986 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000506 1083 RGGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~gG~~~~~G~~ 1093 (1458)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 5 788888874
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=324.52 Aligned_cols=214 Identities=24% Similarity=0.298 Sum_probs=169.2
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCcccEEEECCeecCCccc----cceEEEecCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKL--DDDLKLTGKIKYCGHEFKEFVP----QRTCAYISQNDLH 255 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~--~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~ 255 (1458)
++++|+|+|++|++||+++|+|||||||||||++|+|++ +|+ +|+|.++|+++..... +..++|++|++.+
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (243)
T TIGR01978 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEE 88 (243)
T ss_pred CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeeccccc
Confidence 346999999999999999999999999999999999995 566 9999999998765332 2348999999999
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc-ccccccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD-ICADTMV 334 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~v 334 (1458)
++.+||+|++.+............ .... .+ ....++.+++.+||+ ...++.+
T Consensus 89 ~~~~t~~~~~~~~~~~~~~~~~~~---~~~~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 141 (243)
T TIGR01978 89 IPGVSNLEFLRSALNARRSARGEE---PLDL----------LD--------------FLKLLKAKLALLGMDEEFLNRSV 141 (243)
T ss_pred cCCcCHHHHHHHHHHHhhcccccc---cccH----------HH--------------HHHHHHHHHHHcCCchhhccccc
Confidence 999999999987543211000000 0000 00 011345688899997 4566665
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhc-cCEE
Q 000506 335 GDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDL-FDNI 413 (1458)
Q Consensus 335 g~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~-~D~v 413 (1458)
+. .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+ ++|+.++|+.+++... +|++
T Consensus 142 ~~----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~vsH~~~~~~~~~~d~i 215 (243)
T TIGR01978 142 NE----GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PD-RSFLIITHYQRLLNYIKPDYV 215 (243)
T ss_pred cc----CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CC-cEEEEEEecHHHHHhhcCCeE
Confidence 41 3999999999999999999999999999999999999999999999865 34 4556677778888888 8999
Q ss_pred EEEcCCeEEEEcChhhHH
Q 000506 414 ILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 414 ~lL~~G~iv~~G~~~~~~ 431 (1458)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 216 HVLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEEeCCEEEEecCHHHhc
Confidence 999999999999987654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=328.99 Aligned_cols=205 Identities=27% Similarity=0.360 Sum_probs=169.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCC--c---cccceEEEecCCCC-CC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKE--F---VPQRTCAYISQNDL-HF 256 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--~---~~~~~~~yv~Q~d~-~~ 256 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 45999999999999999999999999999999999999988 9999999998742 1 12356999999965 34
Q ss_pred CCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccC
Q 000506 257 GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD 336 (1458)
Q Consensus 257 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 336 (1458)
...|+.||+.+.....+... . + ....++.+++.+||++..++.+++
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 136 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVPE----------A----------E--------------ITRRVDEALTLVDAQHFRHQPIQC 136 (271)
T ss_pred ccccHHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCCHhHhcCCchh
Confidence 45689999987543221100 0 0 011234578889998888887776
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
||||||||++||++|+.+|+++||||||+|||+.++..+.+.|+++++ .+ ++|+.++|+.+++.+++|++++|
T Consensus 137 -----LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tii~vtH~~~~~~~~~d~i~~l 209 (271)
T PRK13638 137 -----LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QG-NHVIISSHDIDLIYEISDAVYVL 209 (271)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999875 34 45666778888999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000506 417 SEGQIVYQGPREKVL 431 (1458)
Q Consensus 417 ~~G~iv~~G~~~~~~ 431 (1458)
++|++++.|+++++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=325.23 Aligned_cols=219 Identities=25% Similarity=0.275 Sum_probs=176.5
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1458)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..... +.+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478899988763 246999999999999999999999999999999999975421 2489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD 1006 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1006 (1458)
++... ...++.++|++|++.+++. ||+||+.+....+.. ....+.++.++++++.+++.+....... ..+.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLH-DSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhh-cChh
Confidence 87642 2345679999999988874 999999987544321 1223344567888998888532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999875 689999999986 57788999999985 78
Q ss_pred EEEeCCC
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~~~G~~ 1093 (1458)
++..|+.
T Consensus 226 i~~~g~~ 232 (253)
T PRK14261 226 LIEFDKT 232 (253)
T ss_pred EEEcCCH
Confidence 9888875
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=326.92 Aligned_cols=207 Identities=22% Similarity=0.311 Sum_probs=165.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDL--KLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
..+|+|+|++|++||+++|+|||||||||||++|+|.++|+. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 99 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP 99 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc
Confidence 359999999999999999999999999999999999998621 1389999999986421 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCC----ccccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGL----DICAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL----~~~~d 331 (1458)
++ +||+||+.|.....+.... .+. ...++..++.+|+ .+..|
T Consensus 100 ~~-~tv~eni~~~~~~~~~~~~-------------------~~~--------------~~~~~~~l~~~~l~~~l~~~~~ 145 (254)
T PRK14273 100 FL-MSIYDNISYGPKIHGTKDK-------------------KKL--------------DEIVEQSLKKSALWNEVKDKLN 145 (254)
T ss_pred cc-CcHHHHHHHHHHhcCCCCH-------------------HHH--------------HHHHHHHHHHhCCchhhHHHHh
Confidence 75 8999999886433211000 000 0123345666776 34456
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ + ++++.++|+.+++.+++|
T Consensus 146 ~~~~~-----LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tvii~sH~~~~~~~~~d 217 (254)
T PRK14273 146 TNALS-----LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--S-YTIIIVTHNMQQAGRISD 217 (254)
T ss_pred CCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCC
Confidence 66655 999999999999999999999999999999999999999999999853 4 456667788889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++++|++|+++.+|+++++.
T Consensus 218 ~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 218 RTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=367.73 Aligned_cols=207 Identities=28% Similarity=0.402 Sum_probs=169.4
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 259 (1458)
+++|+|+|++++||+.++|+||||||||||+++|+|++ |+ +|+|.+||+++++... ++.++||+|++.+|+.
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~- 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG- 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-
Confidence 46999999999999999999999999999999999999 76 8999999999887653 5789999999999976
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
||+|||.++... ..++++.+.++.+.+. + .+ -.|++..||.||+. .
T Consensus 438 TI~eNI~~g~~~----------------------~~~eei~~al~~a~l~--------~-~i--~~lp~G~dT~vge~-G 483 (588)
T PRK11174 438 TLRDNVLLGNPD----------------------ASDEQLQQALENAWVS--------E-FL--PLLPQGLDTPIGDQ-A 483 (588)
T ss_pred CHHHHhhcCCCC----------------------CCHHHHHHHHHHhCHH--------H-HH--HhcccccccccccC-C
Confidence 999999885210 0112223333332221 1 12 24677889999984 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCC
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G 419 (1458)
..||||||||++|||||+++|+||+||||||+||+.+...|.+.|+++.+ ++|+|++.|++ +..+.+|+|++|++|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIiItHrl--~~i~~aD~Iivl~~G 559 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQL--EDLAQWDQIWVMQDG 559 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCh--HHHHhCCEEEEEeCC
Confidence 55999999999999999999999999999999999999999999998753 56666655554 456779999999999
Q ss_pred eEEEEcChhhHHH
Q 000506 420 QIVYQGPREKVLE 432 (1458)
Q Consensus 420 ~iv~~G~~~~~~~ 432 (1458)
+++.+|+.+++.+
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999998864
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-33 Score=360.46 Aligned_cols=209 Identities=28% Similarity=0.400 Sum_probs=176.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|++|+++. .++.+|+|+|++|+|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 477 ~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 543 (710)
T TIGR03796 477 YVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPR 543 (710)
T ss_pred eEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeH
Confidence 6899999999852 13469999999999999999999999999999999999987 4789999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-------LTNAMVGLPG 1004 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 1004 (1458)
.+ ..+++.+|||+|++.+++ .|++||+.++. .+.+. +.+.++++..++.+ -.|+.+|..+
T Consensus 544 ~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 544 EEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred HHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 43 457889999999999885 69999998641 12222 33566777777654 3467777544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
.+||||||||++|||||+++|+||+||||||+||+.++..+++.|++ .++|+|+++|+++ ....+|++++|++
T Consensus 614 -~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~- 686 (710)
T TIGR03796 614 -ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER- 686 (710)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC-
Confidence 57999999999999999999999999999999999999999999986 4899999999985 5567999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|+++..|+.
T Consensus 687 G~i~~~G~~ 695 (710)
T TIGR03796 687 GKVVQRGTH 695 (710)
T ss_pred CEEEEecCH
Confidence 799999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=326.92 Aligned_cols=208 Identities=22% Similarity=0.326 Sum_probs=171.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc------ccceEEEecCCC--
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV------PQRTCAYISQND-- 253 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d-- 253 (1458)
++.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 356999999999999999999999999999999999999987 999999999876432 235699999996
Q ss_pred CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc-ccccc
Q 000506 254 LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD-ICADT 332 (1458)
Q Consensus 254 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt 332 (1458)
.+++.+||+||+.+....... .... .....++.+++.+||+ +..+.
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLTS---------LDES------------------------EQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhcC---------CCHH------------------------HHHHHHHHHHHHcCCChhhhhC
Confidence 466789999999775321100 0000 0011235578899996 56777
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCE
Q 000506 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412 (1458)
Q Consensus 333 ~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 412 (1458)
.++. |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+ ++|+.++|+.+++.+++|+
T Consensus 147 ~~~~-----LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 147 LPRQ-----LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFG-TAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred Chhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-cEEEEEeCCHHHHHHHhcE
Confidence 7666 999999999999999999999999999999999999999999999876434 5566677888899999999
Q ss_pred EEEEcCCeEEEEcChhhHH
Q 000506 413 IILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 413 v~lL~~G~iv~~G~~~~~~ 431 (1458)
+++|++|++++.|+.+++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999998864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=325.15 Aligned_cols=219 Identities=20% Similarity=0.235 Sum_probs=178.2
Q ss_pred eEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEEC
Q 000506 854 LSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISIS 930 (1458)
Q Consensus 854 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~ 930 (1458)
..+..+++++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 4567777766552 356999999999999999999999999999999999987531 268999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000506 931 GYPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGV 1005 (1458)
Q Consensus 931 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 1005 (1458)
|.+... ..+++.++|++|++.++ .+|+.||+.+....+. . ..+..+.++++++.+++.+..+...+ ...
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCc
Confidence 987632 23456799999998877 5999999998754331 1 12334568899999998653322222 234
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe---
Q 000506 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK--- 1082 (1458)
Q Consensus 1006 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~--- 1082 (1458)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 5799999999999999999999999999999999999999999999985 4799999999986 5778899999996
Q ss_pred ----cCcEEEEeCCC
Q 000506 1083 ----RGGQVIYAGPL 1093 (1458)
Q Consensus 1083 ----~gG~~~~~G~~ 1093 (1458)
++|+++..|+.
T Consensus 226 ~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 226 SQGTRTGYLVEMGPT 240 (261)
T ss_pred ccccCCceEEEeCCH
Confidence 35899999885
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=326.21 Aligned_cols=209 Identities=24% Similarity=0.368 Sum_probs=167.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCeecCC--c---cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD--LKLTGKIKYCGHEFKE--F---VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~--~---~~~~~~~yv~Q~d~~ 255 (1458)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|+++.. . ..++.++|++|++.+
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 45999999999999999999999999999999999998762 1238999999998752 1 124579999999999
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc----ccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI----CAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~d 331 (1458)
++.+||.||+.++....+.....+ +. ...++.+++.+||.. ..+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~------------------~~--------------~~~~~~~l~~~~l~~~~~~~~~ 144 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVKSKK------------------EL--------------DERVEWALKKAALWDEVKDRLN 144 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccCCHH------------------HH--------------HHHHHHHHHHcCCccchhhhhc
Confidence 999999999988643221100000 00 012345677778742 345
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+++ |||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++++ + .+++.++|+.+++.+++|
T Consensus 145 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d 216 (253)
T PRK14267 145 DYPSN-----LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSD 216 (253)
T ss_pred cChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCC
Confidence 55544 999999999999999999999999999999999999999999999864 4 456667788889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
+|++|++|++++.|+++++.
T Consensus 217 ~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 217 YVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=324.10 Aligned_cols=219 Identities=21% Similarity=0.268 Sum_probs=175.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1458)
.++++|+++.+. ++.+|+|+|++|++|++++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 477889888763 245999999999999999999999999999999999987631 2369999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD 1006 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1006 (1458)
.+... ...++.++|++|++.+++. ||+||+.+....+.. . ..+..++.++++++.+++.+....... ..+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT-T-AQSRLDEVVEKSLRQAALWDEVKDNLH-KSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC-C-hhhHHHHHHHHHHHHhCCchhhhhHhh-CCcc
Confidence 87532 1346789999999988875 999999987543311 1 122234557788888887542111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.++|+++. +++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 799999999999999999999999999999999999999999999985 5899999999986 57788999999985 78
Q ss_pred EEEeCCC
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~~~G~~ 1093 (1458)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14249 224 LVEYGRT 230 (251)
T ss_pred EEEeCCH
Confidence 8888875
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=316.60 Aligned_cols=199 Identities=23% Similarity=0.283 Sum_probs=166.4
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.+. .+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 46778877663 2469999999999999999999999999999999999876 47899999998754
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000506 936 Q--ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQR 1013 (1458)
Q Consensus 936 ~--~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1013 (1458)
. ..+++.++|++|++.+++.+||.|++.+....+. . ..++.++++++.+||.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHH
Confidence 2 2345679999999988899999999988654321 1 22356889999999987777654 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEE
Q 000506 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1081 (1458)
Q Consensus 1014 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll 1081 (1458)
||++||+||+.+|++++|||||+|||+.+...+++.|++++++|+|||+++|++. .+.+.-+|++++
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999999877899999999975 354433555544
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=321.52 Aligned_cols=202 Identities=28% Similarity=0.339 Sum_probs=167.0
Q ss_pred eeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCCCCCCCCHHHHH
Q 000506 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETM 265 (1458)
Q Consensus 186 L~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 265 (1458)
|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999987 9999999998765332 358999999999999999999
Q ss_pred HHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCCCChH
Q 000506 266 DFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGG 345 (1458)
Q Consensus 266 ~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGLSGG 345 (1458)
.+..+..... ..+.+ ....++.+++.+||++..++.+++ ||||
T Consensus 76 ~~~~~~~~~~--------~~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPD--------LSKSE------------------------RRAIVEEHIALVGLTEAADKRPGQ-----LSGG 118 (230)
T ss_pred HHHHHhcccC--------CCHHH------------------------HHHHHHHHHHHcCCHHHHcCChhh-----CCHH
Confidence 8753210000 00000 011235578899999888888776 9999
Q ss_pred HHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeEEEEc
Q 000506 346 QKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQG 425 (1458)
Q Consensus 346 qkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~iv~~G 425 (1458)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+ .+|+.++|+.+++.+++|+|++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR-VTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 99999999999999999999999999999999999999999876434 45666778888999999999999999999988
Q ss_pred ChhhH
Q 000506 426 PREKV 430 (1458)
Q Consensus 426 ~~~~~ 430 (1458)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65443
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=316.27 Aligned_cols=195 Identities=26% Similarity=0.301 Sum_probs=167.2
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 4677776653 2468999999999999999999999999999999999876 478999999987532
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000506 937 --ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014 (1458)
Q Consensus 937 --~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1014 (1458)
..+++.++|++|++.+++.+||+|++.+.... . ..++++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~------~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD------H---SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc------c---cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHH
Confidence 23557899999999888899999999875311 1 2345789999999988777654 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEE
Q 000506 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1081 (1458)
Q Consensus 1015 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll 1081 (1458)
|++||++|+.+|++|+|||||+|||+.+...+++.|+++.++|+|+|+++|++. ++...+|+++++
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999999999999999999999999999998878999999999986 677888999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=321.82 Aligned_cols=204 Identities=24% Similarity=0.331 Sum_probs=168.6
Q ss_pred ccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc--cccceEEEec-CCCCC
Q 000506 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF--VPQRTCAYIS-QNDLH 255 (1458)
Q Consensus 179 ~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~-Q~d~~ 255 (1458)
+++.+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|++.... ..++.++|++ |++.+
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCcccc
Confidence 345567999999999999999999999999999999999999988 99999999875432 2245799997 55677
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 335 (1458)
++.+||+|++.+.....+... .+ .....+.+++.+||++..|+.++
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gl~~~~~~~~~ 152 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLPP----------AR------------------------FKKRLDELSELLDLEELLDTPVR 152 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCChhHhcCChh
Confidence 888999999988644322100 00 01123457888999998898887
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEE
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~l 415 (1458)
+ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|++++
T Consensus 153 ~-----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiiivsH~~~~~~~~~d~i~~ 226 (236)
T cd03267 153 Q-----LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG-TTVLLTSHYMKDIEALARRVLV 226 (236)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCC-CEEEEEecCHHHHHHhCCEEEE
Confidence 7 999999999999999999999999999999999999999999999876434 4566677778899999999999
Q ss_pred EcCCeEEEEc
Q 000506 416 LSEGQIVYQG 425 (1458)
Q Consensus 416 L~~G~iv~~G 425 (1458)
|.+|++++.|
T Consensus 227 l~~G~i~~~g 236 (236)
T cd03267 227 IDKGRLLYDG 236 (236)
T ss_pred EeCCEEEecC
Confidence 9999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=324.17 Aligned_cols=201 Identities=25% Similarity=0.397 Sum_probs=168.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc---ccceEEEecCCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV---PQRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 259 (1458)
..+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-G 91 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-h
Confidence 45999999999999999999999999999999999999987 999999999875432 2457999999988886 6
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc-ccccccccCcc
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD-ICADTMVGDQM 338 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg~~~ 338 (1458)
||+||+.+.....+ . . ...++.+++.+||+ +..++.+.+
T Consensus 92 tv~e~l~~~~~~~~--~------~------------------------------~~~~~~~l~~~~l~~~~~~~~~~~-- 131 (241)
T PRK14250 92 TVKDNIEYGPMLKG--E------K------------------------------NVDVEYYLSIVGLNKEYATRDVKN-- 131 (241)
T ss_pred hHHHHHhcchhhcC--c------H------------------------------HHHHHHHHHHcCCCHHHhhCCccc--
Confidence 99999976432110 0 0 00134478889996 466666655
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|+|++|++
T Consensus 132 ---LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tii~~sH~~~~~~~~~d~i~~l~~ 207 (241)
T PRK14250 132 ---LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN-LTVIWITHNMEQAKRIGDYTAFLNK 207 (241)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeccHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999876434 4566677888899999999999999
Q ss_pred CeEEEEcChhhHH
Q 000506 419 GQIVYQGPREKVL 431 (1458)
Q Consensus 419 G~iv~~G~~~~~~ 431 (1458)
|+++..|+++++.
T Consensus 208 G~i~~~~~~~~~~ 220 (241)
T PRK14250 208 GILVEYAKTYDFF 220 (241)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988763
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=302.53 Aligned_cols=216 Identities=26% Similarity=0.415 Sum_probs=186.5
Q ss_pred ccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc---ccccceEEEEccCCCCCCC
Q 000506 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATFARVSGYCEQNDIHSPH 955 (1458)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ 955 (1458)
+.+.+|+++|..|++|.+|+|+|||||||||||.+++++.+ ..+|+|+++|++... ..+++.++.+-|+......
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 45789999999999999999999999999999999999876 589999999998643 4567888999999988899
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000506 956 VTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035 (1458)
Q Consensus 956 lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPT 1035 (1458)
+||+|-+.|+..-. ......++.+..+++.++.++|++++|+... +||||||||.-||..|+++.+.++||||.
T Consensus 90 lTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQrQRAfIAMVlaQdTdyvlLDEPL 163 (252)
T COG4604 90 LTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163 (252)
T ss_pred eEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhHH-----hcccchhhhhhhheeeeccCcEEEecCcc
Confidence 99999999974322 2233445667789999999999999998864 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCCc--chHHHHHHH
Q 000506 1036 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGR--QSQKLVEYF 1104 (1458)
Q Consensus 1036 sgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~~--~~~~~~~~f 1104 (1458)
++||...+..+|+.||+++++ |+|||++.||.+. .-.+.|.++-|++ |+++..|++++ ..+.+.+.|
T Consensus 164 NNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~eii~~~~L~eiy 233 (252)
T COG4604 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPDEIIQPEILSEIY 233 (252)
T ss_pred cccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHHHhcCHHHHHHHh
Confidence 999999999999999999977 9999999999874 4557799999985 89999999864 334444544
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=369.89 Aligned_cols=209 Identities=23% Similarity=0.371 Sum_probs=175.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++||++.+. +++++|+|+|++++|||++||+||||||||||+++|+|.. + .+|+|.+||++.
T Consensus 349 ~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEec
Confidence 589999986542 1246999999999999999999999999999999999987 4 589999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-------LTNAMVGLPG 1004 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 1004 (1458)
.+ ..+++.++||+|++.++. -|++||+.++. .+.++ +.++++++..++.+ -.|+.+|..+
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred ccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 53 457789999999999886 59999998852 12333 33566666666543 3477888654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
..||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +++|+|+++|+++ ..+.+|++++|++
T Consensus 484 -~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~- 558 (588)
T PRK11174 484 -AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD- 558 (588)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC-
Confidence 4799999999999999999999999999999999999999999999885 5899999999985 5678999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|+++..|+.
T Consensus 559 G~i~e~G~~ 567 (588)
T PRK11174 559 GQIVQQGDY 567 (588)
T ss_pred CeEeecCCH
Confidence 799999874
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=327.99 Aligned_cols=210 Identities=26% Similarity=0.395 Sum_probs=172.1
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc---ccceEEEecCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV---PQRTCAYISQNDLHFGE 258 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~ 258 (1458)
++++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.
T Consensus 14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (255)
T PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEG 90 (255)
T ss_pred CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCC
Confidence 346999999999999999999999999999999999999887 999999999875432 23569999999888888
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
+||.||+.++..... ..+. . ...+ ....++.+++.+||++..++.+++
T Consensus 91 ~tv~~~i~~~~~~~~--~~~~---~-----------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~-- 138 (255)
T PRK11231 91 ITVRELVAYGRSPWL--SLWG---R-----------LSAE--------------DNARVNQAMEQTRINHLADRRLTD-- 138 (255)
T ss_pred ccHHHHHHhccchhh--hhcc---C-----------CCHH--------------HHHHHHHHHHHcCCHHHHcCCccc--
Confidence 999999987531000 0000 0 0000 011235578889998888888777
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++++. + ++++.++|+.+++.+++|++++|++
T Consensus 139 ---LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~-~-~tiii~tH~~~~~~~~~d~i~~l~~ 213 (255)
T PRK11231 139 ---LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ-G-KTVVTVLHDLNQASRYCDHLVVLAN 213 (255)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999999999999999998652 4 4566677888899999999999999
Q ss_pred CeEEEEcChhhHH
Q 000506 419 GQIVYQGPREKVL 431 (1458)
Q Consensus 419 G~iv~~G~~~~~~ 431 (1458)
|+++..|+.+++.
T Consensus 214 G~i~~~~~~~~~~ 226 (255)
T PRK11231 214 GHVMAQGTPEEVM 226 (255)
T ss_pred CeEEEEcCHHHhc
Confidence 9999999987753
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=327.21 Aligned_cols=224 Identities=25% Similarity=0.352 Sum_probs=180.4
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
+.++|+++.+.... ..+ ...++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~nl~~~~~~~~---~~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---ccc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 67888888764100 000 0013569999999999999999999999999999999999876 47999999998754
Q ss_pred cc------cccceEEEEccCC--CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000506 936 QA------TFARVSGYCEQND--IHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVD 1006 (1458)
Q Consensus 936 ~~------~~~~~~gyv~Q~~--~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 1006 (1458)
.. ..++.++|++|++ .+.+..|+.|++.+..... ......+..+.++++++.+++. +..++.+ .
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP-----P 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----c
Confidence 21 2456799999997 3567899999987653211 1223444556789999999996 4556553 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|++. ++.+.+|++++|.+ |
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-G 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999986 57778999999985 7
Q ss_pred EEEEeCCCC
Q 000506 1086 QVIYAGPLG 1094 (1458)
Q Consensus 1086 ~~~~~G~~~ 1094 (1458)
++++.|+..
T Consensus 229 ~i~~~g~~~ 237 (268)
T PRK10419 229 QIVETQPVG 237 (268)
T ss_pred EEeeeCChh
Confidence 899998864
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=317.75 Aligned_cols=195 Identities=24% Similarity=0.361 Sum_probs=164.0
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-cceEEEecCCCCCCCCCCHHHHHH
Q 000506 188 DVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEMTVRETMD 266 (1458)
Q Consensus 188 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 266 (1458)
|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999987 9999999998765332 457999999999999999999998
Q ss_pred HhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCCCChHH
Q 000506 267 FSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQ 346 (1458)
Q Consensus 267 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGLSGGq 346 (1458)
+......... +. ....++.+++.+||++..++.+.. |||||
T Consensus 93 ~~~~~~~~~~---------~~-------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~ 133 (211)
T cd03298 93 LGLSPGLKLT---------AE-------------------------DRQAIEVALARVGLAGLEKRLPGE-----LSGGE 133 (211)
T ss_pred cccccccCcc---------HH-------------------------HHHHHHHHHHHcCCHHHHhCCccc-----CCHHH
Confidence 7532110000 00 011235578899998888887766 99999
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeEEEEc
Q 000506 347 KKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQG 425 (1458)
Q Consensus 347 kkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~iv~~G 425 (1458)
|||++||++|+.+|++++|||||+|||..++..+.+.|+++++..+ .+++.++|+.+++.+++|++++|++|+++..|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETK-MTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999999999875434 45666778889999999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=320.53 Aligned_cols=204 Identities=22% Similarity=0.278 Sum_probs=167.9
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC----CCCcccEEEECCeecCCccc-cceEEEecCCCC--CCC
Q 000506 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDD----DLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDL--HFG 257 (1458)
Q Consensus 185 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~----~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~ 257 (1458)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999987 6 9999999998765433 257999999974 556
Q ss_pred CCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc---ccccccc
Q 000506 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD---ICADTMV 334 (1458)
Q Consensus 258 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~---~~~dt~v 334 (1458)
.+|+.|++.+.....+... + .....++.+++.+||+ +..++.+
T Consensus 78 ~~t~~~~~~~~~~~~~~~~--~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~ 123 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLS--K--------------------------------QARALILEALEAVGLPDPEEVLKKYP 123 (230)
T ss_pred ccCHHHHHHHHHHHcCccH--H--------------------------------HHHHHHHHHHHHcCCCchHHHHhCCh
Confidence 7899999977543211100 0 0011245578899997 4456666
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEE
Q 000506 335 GDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNII 414 (1458)
Q Consensus 335 g~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~ 414 (1458)
++ |||||||||+||++|+.+|++++|||||+|||..++..+.+.|+++++.. +++|+.++|+.+++..++|+++
T Consensus 124 ~~-----LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~ 197 (230)
T TIGR02770 124 FQ-----LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLF-GTGILLITHDLGVVARIADEVA 197 (230)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 65 99999999999999999999999999999999999999999999987633 3456667788889999999999
Q ss_pred EEcCCeEEEEcChhhHH
Q 000506 415 LLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 415 lL~~G~iv~~G~~~~~~ 431 (1458)
+|++|+++..|+++++.
T Consensus 198 ~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 198 VMDDGRIVERGTVKEIF 214 (230)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=323.09 Aligned_cols=215 Identities=22% Similarity=0.298 Sum_probs=174.3
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcC--CC-ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 931 (1458)
.+.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478899988763 2469999999999999999999999999999999999753 11 2489999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMVGL 1002 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 1002 (1458)
.+... ...++.++|++|++.+++ .||+||+.+....+.. ...+..++.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87632 234568999999998887 6999999886543221 112222345677888887742 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++.+.+|++++|+
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 589999999986 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000506 1083 RGGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~gG~~~~~G~~ 1093 (1458)
+ |+++..|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14255 222 T-GNLIEFADT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 788888875
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=329.68 Aligned_cols=205 Identities=23% Similarity=0.374 Sum_probs=171.6
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc---ccceEEEecCCCC-CCCCC
Q 000506 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV---PQRTCAYISQNDL-HFGEM 259 (1458)
Q Consensus 184 ~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 259 (1458)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 5999999999999999999999999999999999999988 999999999875432 2356999999963 34467
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
||+||+.+.....+... . + ....++.+++.+||.+..++.+.+
T Consensus 95 tv~~~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~--- 137 (277)
T PRK13652 95 TVEQDIAFGPINLGLDE----------E----------T--------------VAHRVSSALHMLGLEELRDRVPHH--- 137 (277)
T ss_pred cHHHHHHhHHHHcCCCH----------H----------H--------------HHHHHHHHHHHCCChhHhcCCccc---
Confidence 99999987543221100 0 0 011245688999999888888776
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCC
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G 419 (1458)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+ ++|+.++|+.+++.+++|+|++|++|
T Consensus 138 --LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 138 --LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYG-MTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999876434 56666778888999999999999999
Q ss_pred eEEEEcChhhHH
Q 000506 420 QIVYQGPREKVL 431 (1458)
Q Consensus 420 ~iv~~G~~~~~~ 431 (1458)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998874
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=357.40 Aligned_cols=212 Identities=21% Similarity=0.350 Sum_probs=182.4
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++ ++.+|+|+|++|++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478999998773 2469999999999999999999999999999999999876 4789999999876
Q ss_pred Ccc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 935 NQA---T-FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 935 ~~~---~-~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
... . .++.+||++|++.+++.+||+|++.+.... .++.++.++++++.++|.+..+..++ .|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAG-----SLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChh-----hCCH
Confidence 431 1 124699999999999999999999875311 12334568899999999887777654 7999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEe
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~ 1090 (1458)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|.+ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999986 57788999999985 788899
Q ss_pred CCCCc
Q 000506 1091 GPLGR 1095 (1458)
Q Consensus 1091 G~~~~ 1095 (1458)
|+...
T Consensus 222 g~~~~ 226 (510)
T PRK15439 222 GKTAD 226 (510)
T ss_pred cChHH
Confidence 88643
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=316.66 Aligned_cols=232 Identities=23% Similarity=0.310 Sum_probs=184.2
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-C-CCCcccEEEECCeecCCccc-------cceEEEecCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD-D-DLKLTGKIKYCGHEFKEFVP-------QRTCAYISQN 252 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~-~-~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~ 252 (1458)
..++++||||.+++||+++|+|.|||||||+.++|.|+++ + ....+|+|.++|.++..+.. .+.|+||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999997 4 33457999999997755432 2579999999
Q ss_pred C--CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccc
Q 000506 253 D--LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICA 330 (1458)
Q Consensus 253 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 330 (1458)
+ .+.|.+||.+.+.-..+...... .++ +....+..+|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------~~~------------------------ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------SKK------------------------EAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------hhH------------------------HHHHHHHHHHHHcCCCCHH
Confidence 5 58899999998876554321100 000 0112344578899998632
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhcc
Q 000506 331 DTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLF 410 (1458)
Q Consensus 331 dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~ 410 (1458)
. +-+.+...|||||||||.||.||+.+|++||.||||++||..++.+|++.|+++.++ .+++++.++|+..-+.+++
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e-~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE-KGTALILITHDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhc
Confidence 1 123344559999999999999999999999999999999999999999999999985 4678888999999999999
Q ss_pred CEEEEEcCCeEEEEcChhhHHHHHHhcCCCCCCCCCHHHHHHHhcC
Q 000506 411 DNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTS 456 (1458)
Q Consensus 411 D~v~lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~ad~l~ev~s 456 (1458)
|||+||+.|+||+.|+.+++. +.|.+.-+...+..+..
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~--------~~P~HPYT~~Ll~s~P~ 259 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF--------KNPKHPYTRGLLNSLPR 259 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh--------cCCCChHHHHHHHhCcc
Confidence 999999999999999999874 45655555555544433
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=326.88 Aligned_cols=205 Identities=27% Similarity=0.381 Sum_probs=170.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc-----cccceEEEecCCCC-CC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDL-HF 256 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~-~~ 256 (1458)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++. .+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 35999999999999999999999999999999999999987 99999999987421 12457999999963 33
Q ss_pred CCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccC
Q 000506 257 GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD 336 (1458)
Q Consensus 257 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 336 (1458)
..+||+||+.+.....+.. +.+ ....+..+++.+||++..++.+++
T Consensus 92 ~~~tv~e~i~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~~ 137 (275)
T PRK13639 92 FAPTVEEDVAFGPLNLGLS----------KEE------------------------VEKRVKEALKAVGMEGFENKPPHH 137 (275)
T ss_pred ccccHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCchhhcCChhh
Confidence 3579999998753211100 000 011234578999999888888877
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
||||||||++||++|+.+|++++|||||+|||+.++.++.+.|+++++. +++|+.++|+.+++.+++|++++|
T Consensus 138 -----LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~~til~vtH~~~~~~~~~d~i~~l 210 (275)
T PRK13639 138 -----LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE--GITIIISTHDVDLVPVYADKVYVM 210 (275)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998753 455666778888999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000506 417 SEGQIVYQGPREKVL 431 (1458)
Q Consensus 417 ~~G~iv~~G~~~~~~ 431 (1458)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 211 SDGKIIKEGTPKEVF 225 (275)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998874
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=324.30 Aligned_cols=207 Identities=25% Similarity=0.332 Sum_probs=163.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD--DDLKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|+.+ +....+|+|.++|+++... ..++.++|++|++.+
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 98 (253)
T PRK14242 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNP 98 (253)
T ss_pred eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCC
Confidence 359999999999999999999999999999999999864 1001289999999987531 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc----ccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI----CAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~d 331 (1458)
++ .||+||+.++....+.... + + ....++.+++.+||.+ ..+
T Consensus 99 ~~-~tv~enl~~~~~~~~~~~~-~---~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~ 144 (253)
T PRK14242 99 FP-KSIFENVAYGLRVNGVKDK-A---Y-----------------------------LAERVERSLRHAALWDEVKDRLH 144 (253)
T ss_pred Cc-CcHHHHHHHHHHHcCCCCH-H---H-----------------------------HHHHHHHHHHHcCCchhhhHHhh
Confidence 87 5999999886543221100 0 0 0012344677778743 234
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
..+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ + .+|+.++|+.+++.+++|
T Consensus 145 ~~~~~-----LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tvii~tH~~~~~~~~~d 216 (253)
T PRK14242 145 ESALG-----LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--R-YTIIIVTHNMQQAARVSD 216 (253)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CeEEEEEecHHHHHHhCC
Confidence 44444 999999999999999999999999999999999999999999999853 4 456667788889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
+|++|++|+++..|+++++.
T Consensus 217 ~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 217 VTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999987763
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=327.06 Aligned_cols=209 Identities=24% Similarity=0.415 Sum_probs=163.3
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.+.. +.+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHh
Confidence 56777776531 12458999999999999999999999999999999999976 478999999987532
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCCC
Q 000506 937 ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRK-----MFVDEVMDLV--ELEPLTNAMVGLPGVD 1006 (1458)
Q Consensus 937 ---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~vg~~~~~ 1006 (1458)
..+++.++|++|++.+++ .||+||+.+... ........ ...++.++.+ ++.+..+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GA 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CC
Confidence 234567999999987764 699999977421 11111100 1122333333 333333332 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++ +|+|||+++|++. ++ +.+|++++|++ |+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVMEK-GR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC-CE
Confidence 899999999999999999999999999999999999999999999986 4899999999986 35 56999999985 78
Q ss_pred EEEeCCC
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~~~G~~ 1093 (1458)
+++.|+.
T Consensus 214 i~~~~~~ 220 (237)
T cd03252 214 IVEQGSH 220 (237)
T ss_pred EEEEcCH
Confidence 9998875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=319.32 Aligned_cols=206 Identities=31% Similarity=0.378 Sum_probs=173.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc-ccceEEEecCCCCCCCCCCH
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV-PQRTCAYISQNDLHFGEMTV 261 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV 261 (1458)
+++++|+|++++|||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++..++.+||
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 46999999999999999999999999999999999999987 999999999876533 24679999999999989999
Q ss_pred HHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCC
Q 000506 262 RETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRG 341 (1458)
Q Consensus 262 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 341 (1458)
+||+.+.....+... + + .....+.+++.+||++..++.+.+
T Consensus 90 ~~nl~~~~~~~~~~~--~------------------~--------------~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (232)
T cd03300 90 FENIAFGLRLKKLPK--A------------------E--------------IKERVAEALDLVQLEGYANRKPSQ----- 130 (232)
T ss_pred HHHHHHHHHhcCCCH--H------------------H--------------HHHHHHHHHHHcCCchhhcCChhh-----
Confidence 999987644321100 0 0 011235578899999888888766
Q ss_pred CChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeE
Q 000506 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421 (1458)
Q Consensus 342 LSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~i 421 (1458)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+. +|+.++|+.+++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~-tiii~sh~~~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGI-TFVFVTHDQEEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998764344 555566777889999999999999999
Q ss_pred EEEcChhhHH
Q 000506 422 VYQGPREKVL 431 (1458)
Q Consensus 422 v~~G~~~~~~ 431 (1458)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999887663
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=320.47 Aligned_cols=209 Identities=22% Similarity=0.353 Sum_probs=170.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 478899988763 2469999999999999999999999999999999999876 4789999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSg 1010 (1458)
.. ..+++.++|++|++.+++ .||+||+.+....+.. . ..++.++++++.+++. ...++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKNI-----AELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCCc-----ccCCH
Confidence 32 234567999999988877 4999999875443211 1 1134578899999996 3555553 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
|||||++||++|+.+|++++|||||+|||+.+...+.+.|++++++ |.|||+++|++. ++ +.+|++++|.+.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 9999999999999999999999999999999999999999998764 899999999986 34 57999999953333333
Q ss_pred eC
Q 000506 1090 AG 1091 (1458)
Q Consensus 1090 ~G 1091 (1458)
.|
T Consensus 219 ~~ 220 (225)
T PRK10247 219 EA 220 (225)
T ss_pred hh
Confidence 33
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=355.99 Aligned_cols=216 Identities=27% Similarity=0.363 Sum_probs=181.5
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 478889988763 2459999999999999999999999999999999999876 4789999999876
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000506 935 NQA----TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLST 1010 (1458)
Q Consensus 935 ~~~----~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1010 (1458)
... ..++.+||++|++.+++.+||+||+.+....+.....+.++.++.++++++.++|.+..+..+ ..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 421 235679999999999999999999988532111111223444567889999999987666654 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEe
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090 (1458)
Q Consensus 1011 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~ 1090 (1458)
|||||++||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||+++|++. ++.+.||++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999888999999999986 57788999999986 677766
Q ss_pred CC
Q 000506 1091 GP 1092 (1458)
Q Consensus 1091 G~ 1092 (1458)
++
T Consensus 222 ~~ 223 (501)
T PRK11288 222 FD 223 (501)
T ss_pred cC
Confidence 54
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=328.46 Aligned_cols=204 Identities=23% Similarity=0.327 Sum_probs=167.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc-------ccceEEEecCCC--
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV-------PQRTCAYISQND-- 253 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d-- 253 (1458)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999999987 999999999875421 235699999996
Q ss_pred CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc-ccccc
Q 000506 254 LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD-ICADT 332 (1458)
Q Consensus 254 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt 332 (1458)
.+++ .||+||+.|.....+... . + ....++.+++.+||. ...++
T Consensus 97 ~~~~-~tv~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~ 141 (280)
T PRK13649 97 QLFE-ETVLKDVAFGPQNFGVSQ----------E----------E--------------AEALAREKLALVGISESLFEK 141 (280)
T ss_pred hhcc-ccHHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCCChhhhhC
Confidence 3454 699999987543221100 0 0 011234578889997 45677
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCE
Q 000506 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412 (1458)
Q Consensus 333 ~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 412 (1458)
.+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .+ ++|+.++|+.+++.+++|+
T Consensus 142 ~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tiiivsH~~~~~~~~~d~ 214 (280)
T PRK13649 142 NPFE-----LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SG-MTIVLVTHLMDDVANYADF 214 (280)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeccHHHHHHhCCE
Confidence 7666 999999999999999999999999999999999999999999999875 24 4566677778899999999
Q ss_pred EEEEcCCeEEEEcChhhHH
Q 000506 413 IILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 413 v~lL~~G~iv~~G~~~~~~ 431 (1458)
+++|++|++++.|+++++.
T Consensus 215 i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 215 VYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988763
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=326.22 Aligned_cols=215 Identities=20% Similarity=0.241 Sum_probs=175.8
Q ss_pred eEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEEC
Q 000506 854 LSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISIS 930 (1458)
Q Consensus 854 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~ 930 (1458)
..+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|...+. +.+|+|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 3688999998763 246999999999999999999999999999999999986421 258999999
Q ss_pred CeeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000506 931 GYPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMVG 1001 (1458)
Q Consensus 931 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg 1001 (1458)
|++... ..+++.++|++|++.+++. ||.||+.+....+. .. ...++.+++.++.+++.. ..+..
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 158 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK-- 158 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC--
Confidence 987532 2345689999999888774 99999988643321 11 122345677888888742 23332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEE
Q 000506 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1081 (1458)
Q Consensus 1002 ~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll 1081 (1458)
+..||||||||++||+||+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ ++.+.+|++++|
T Consensus 159 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l 233 (274)
T PRK14265 159 ---GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFF 233 (274)
T ss_pred ---cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999986 588899999999
Q ss_pred e--------cCcEEEEeCCC
Q 000506 1082 K--------RGGQVIYAGPL 1093 (1458)
Q Consensus 1082 ~--------~gG~~~~~G~~ 1093 (1458)
+ +.|++++.|+.
T Consensus 234 ~~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 234 NTEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred ecccccccccCceEEEeCCH
Confidence 7 25899999986
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=326.78 Aligned_cols=209 Identities=23% Similarity=0.341 Sum_probs=171.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc---ccceEEEecCCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV---PQRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 259 (1458)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 46999999999999999999999999999999999999987 999999999875432 235699999998888889
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
||.||+.+...... .. . +. ...+ ....++.+++.+||++..++.+++
T Consensus 101 tv~e~l~~~~~~~~-~~-~-------------~~-~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~--- 147 (265)
T PRK10575 101 TVRELVAIGRYPWH-GA-L-------------GR-FGAA--------------DREKVEEAISLVGLKPLAHRLVDS--- 147 (265)
T ss_pred cHHHHHHhCccccc-cc-c-------------cC-CCHH--------------HHHHHHHHHHHcCCHHHhcCCccc---
Confidence 99999987532100 00 0 00 0000 011235578899998888888877
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCC
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G 419 (1458)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|+|++|++|
T Consensus 148 --LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~-~tiii~sH~~~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 148 --LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG-LTVIAVLHDINMAARYCDYLVALRGG 224 (265)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999875434 45666778888999999999999999
Q ss_pred eEEEEcChhhH
Q 000506 420 QIVYQGPREKV 430 (1458)
Q Consensus 420 ~iv~~G~~~~~ 430 (1458)
+++..|+.+++
T Consensus 225 ~i~~~~~~~~~ 235 (265)
T PRK10575 225 EMIAQGTPAEL 235 (265)
T ss_pred eEEEecCHHHh
Confidence 99999998775
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=327.02 Aligned_cols=210 Identities=25% Similarity=0.380 Sum_probs=172.9
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHFGE 258 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 258 (1458)
...+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 19 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 95 (265)
T PRK10253 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGD 95 (265)
T ss_pred CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCC
Confidence 346999999999999999999999999999999999999987 9999999998754322 3569999999998888
Q ss_pred CCHHHHHHHhhhhc-cCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCc
Q 000506 259 MTVRETMDFSGRCL-GVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQ 337 (1458)
Q Consensus 259 lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 337 (1458)
+||+||+.+...-. ...... ... ....++.+++.+||++..++.+.+
T Consensus 96 ~tv~~~~~~~~~~~~~~~~~~-----------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~- 143 (265)
T PRK10253 96 ITVQELVARGRYPHQPLFTRW-----------------RKE--------------DEEAVTKAMQATGITHLADQSVDT- 143 (265)
T ss_pred CcHHHHHHhCcccccccccCC-----------------CHH--------------HHHHHHHHHHHcCCHHHhcCCccc-
Confidence 99999998742100 000000 000 011235578899998877887766
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEc
Q 000506 338 MRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417 (1458)
Q Consensus 338 ~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~ 417 (1458)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++..+ ++++.++|+..++.+++|++++|+
T Consensus 144 ----LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~-~tiii~tH~~~~~~~~~d~i~~l~ 218 (265)
T PRK10253 144 ----LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKG-YTLAAVLHDLNQACRYASHLIALR 218 (265)
T ss_pred ----CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999875334 456667788889999999999999
Q ss_pred CCeEEEEcChhhHH
Q 000506 418 EGQIVYQGPREKVL 431 (1458)
Q Consensus 418 ~G~iv~~G~~~~~~ 431 (1458)
+|++++.|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (265)
T PRK10253 219 EGKIVAQGAPKEIV 232 (265)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988764
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=326.53 Aligned_cols=215 Identities=22% Similarity=0.232 Sum_probs=174.4
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcC--C-CceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1458)
.+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 588999998763 2358999999999999999999999999999999999864 1 13789999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE----PLTNAMVGL 1002 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 1002 (1458)
.+... ..+++.++|++|++.+++ .||+||+.+....+. ..+.+..++.+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87632 234567999999998877 499999988653321 112222344567778777543 223333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1003 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
+..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999986 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000506 1083 RGGQVIYAGPL 1093 (1458)
Q Consensus 1083 ~gG~~~~~G~~ 1093 (1458)
+ |++++.|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 5 789888875
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=321.43 Aligned_cols=220 Identities=23% Similarity=0.310 Sum_probs=176.5
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++ ++.+|+|||+++++||++||+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 478899988763 2359999999999999999999999999999999999731124789999999876
Q ss_pred Ccc---cccc-eEEEEccCCCCCCCCCHHHHHHHHHhhhcC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000506 935 NQA---TFAR-VSGYCEQNDIHSPHVTVYESLLFSAWLRLS----SDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGV 1005 (1458)
Q Consensus 935 ~~~---~~~~-~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~----~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 1005 (1458)
... ..++ .++|++|++.+++.+|+.|++.+....... .+....+..+.++++++.+++. +..++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 432 2222 478999999999999999998875432110 0112223345678899999997 34555432
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-hceEEEEecC
Q 000506 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLMKRG 1084 (1458)
Q Consensus 1006 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~-~D~vlll~~g 1084 (1458)
.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+... +|++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeC-
Confidence 259999999999999999999999999999999999999999999999877999999999976 35444 799999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 799999876
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=318.07 Aligned_cols=195 Identities=26% Similarity=0.377 Sum_probs=163.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc-----cccceEEEecCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLHFG 257 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~ 257 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 46999999999999999999999999999999999999987 99999999987421 12467999999999999
Q ss_pred CCCHHHHHHHhhh-hccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccC
Q 000506 258 EMTVRETMDFSGR-CLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGD 336 (1458)
Q Consensus 258 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 336 (1458)
.+||+||+.+... .++.. ..+ ....++.+++.+||++..++.+.+
T Consensus 90 ~~t~~e~l~~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 135 (213)
T cd03262 90 HLTVLENITLAPIKVKGMS----------KAE------------------------AEERALELLEKVGLADKADAYPAQ 135 (213)
T ss_pred CCcHHHHHHhHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCCHhHhhhCccc
Confidence 9999999987532 11100 000 011234578889998888888776
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+ ++++.++|+.+++.+++|++++|
T Consensus 136 -----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 136 -----LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EG-MTMVVVTHEMGFAREVADRVIFM 208 (213)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999975 34 45666778888999999999999
Q ss_pred cCCeE
Q 000506 417 SEGQI 421 (1458)
Q Consensus 417 ~~G~i 421 (1458)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=327.92 Aligned_cols=205 Identities=25% Similarity=0.331 Sum_probs=170.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc----ccceEEEecCCCC-CCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV----PQRTCAYISQNDL-HFG 257 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 257 (1458)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999988 999999999876421 2467999999974 233
Q ss_pred CCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCc
Q 000506 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQ 337 (1458)
Q Consensus 258 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 337 (1458)
..||.|++.|.....+... . + ....++.+++.+||++..++.+++
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~gL~~~~~~~~~~- 144 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------E----------E--------------IRERVDESLKKVGMYEYRRHAPHL- 144 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------H----------H--------------HHHHHHHHHHHCCCHhHhhCCccc-
Confidence 4699999988654221100 0 0 011245688999999988888877
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEc
Q 000506 338 MRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417 (1458)
Q Consensus 338 ~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~ 417 (1458)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.. +|++++|+
T Consensus 145 ----LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tillvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 145 ----LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYG-ITIILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecChHHHhc-CCEEEEEE
Confidence 999999999999999999999999999999999999999999999976434 455556677777765 99999999
Q ss_pred CCeEEEEcChhhHH
Q 000506 418 EGQIVYQGPREKVL 431 (1458)
Q Consensus 418 ~G~iv~~G~~~~~~ 431 (1458)
+|+++++|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998875
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=325.65 Aligned_cols=208 Identities=27% Similarity=0.409 Sum_probs=171.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 259 (1458)
..+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 46999999999999999999999999999999999999987 9999999998765322 34699999998777889
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
||+||+.+...... ... .. +..+ ....++.+++.+||.+..++.+++
T Consensus 91 tv~e~l~~~~~~~~---------~~~------~~-~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~--- 137 (256)
T TIGR03873 91 TVRDVVALGRIPHR---------SLW------AG-DSPH--------------DAAVVDRALARTELSHLADRDMST--- 137 (256)
T ss_pred CHHHHHHhcchhhh---------hhc------cC-CCHH--------------HHHHHHHHHHHcCcHhhhcCCccc---
Confidence 99999987421000 000 00 0000 011234578889998888888776
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCC
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G 419 (1458)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+ ++|+.++|+.+++.+++|+|++|++|
T Consensus 138 --LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 138 --LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TG-VTVVAALHDLNLAASYCDHVVVLDGG 213 (256)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999864 24 56666778888999999999999999
Q ss_pred eEEEEcChhhH
Q 000506 420 QIVYQGPREKV 430 (1458)
Q Consensus 420 ~iv~~G~~~~~ 430 (1458)
+++.+|+.+++
T Consensus 214 ~i~~~g~~~~~ 224 (256)
T TIGR03873 214 RVVAAGPPREV 224 (256)
T ss_pred CEEEecCHHHh
Confidence 99999998775
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=325.60 Aligned_cols=205 Identities=24% Similarity=0.333 Sum_probs=168.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc---ccceEEEecCCCC-CCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV---PQRTCAYISQNDL-HFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 258 (1458)
+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++. +++.
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVG 98 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhccc
Confidence 35899999999999999999999999999999999999987 999999999875432 2457999999974 6778
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
.|+++|+.|.....+.. .+ + ....++.+++.+||.+..|+.+++
T Consensus 99 ~~v~~~~~~~~~~~~~~--~~------------------~--------------~~~~~~~~l~~~~l~~~~~~~~~~-- 142 (269)
T PRK13648 99 SIVKYDVAFGLENHAVP--YD------------------E--------------MHRRVSEALKQVDMLERADYEPNA-- 142 (269)
T ss_pred ccHHHHHHhhHHhcCCC--HH------------------H--------------HHHHHHHHHHHcCCchhhhCCccc--
Confidence 89999998864322110 00 0 011234578899998888877766
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.| ++.++|+.+++.. +|+|++|++
T Consensus 143 ---LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~t-iiivtH~~~~~~~-~d~i~~l~~ 217 (269)
T PRK13648 143 ---LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNIT-IISITHDLSEAME-ADHVIVMNK 217 (269)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCchHHhc-CCEEEEEEC
Confidence 99999999999999999999999999999999999999999999987543444 5555666677765 999999999
Q ss_pred CeEEEEcChhhHH
Q 000506 419 GQIVYQGPREKVL 431 (1458)
Q Consensus 419 G~iv~~G~~~~~~ 431 (1458)
|++++.|+++++.
T Consensus 218 G~i~~~g~~~~~~ 230 (269)
T PRK13648 218 GTVYKEGTPTEIF 230 (269)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=318.33 Aligned_cols=198 Identities=24% Similarity=0.355 Sum_probs=163.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-------cceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-------QRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 255 (1458)
.++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l 99 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFML 99 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEccccc
Confidence 35999999999999999999999999999999999999988 9999999998765322 2469999999999
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 335 (1458)
++.+||.||+.+.....+... ++ ....++.+++.+||.+..++.+.
T Consensus 100 ~~~~tv~~~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 145 (228)
T PRK10584 100 IPTLNALENVELPALLRGESS--------------------RQ--------------SRNGAKALLEQLGLGKRLDHLPA 145 (228)
T ss_pred CCCcCHHHHHHHHHHhcCCCH--------------------HH--------------HHHHHHHHHHHcCCHhHhhCChh
Confidence 999999999987543221100 00 01123557889999888888877
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEE
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~l 415 (1458)
+ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+. +|+.++|+.+++ +.+|++++
T Consensus 146 ~-----LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~-tii~~sH~~~~~-~~~d~i~~ 218 (228)
T PRK10584 146 Q-----LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGT-TLILVTHDLQLA-ARCDRRLR 218 (228)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCC-EEEEEecCHHHH-HhCCEEEE
Confidence 6 9999999999999999999999999999999999999999999998754344 455566666676 45999999
Q ss_pred EcCCeEEEE
Q 000506 416 LSEGQIVYQ 424 (1458)
Q Consensus 416 L~~G~iv~~ 424 (1458)
|++|++++.
T Consensus 219 l~~g~i~~~ 227 (228)
T PRK10584 219 LVNGQLQEE 227 (228)
T ss_pred EECCEEEec
Confidence 999999753
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=325.44 Aligned_cols=208 Identities=24% Similarity=0.323 Sum_probs=166.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD--LKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 45999999999999999999999999999999999998741 01289999999987531 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc----ccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI----CAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~d 331 (1458)
++. ||.||+.|+.+..+.... +. + ....++.+++.+||.+ ..+
T Consensus 112 ~~~-tv~enl~~~~~~~~~~~~--------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 158 (267)
T PRK14235 112 FPK-SIYENVAYGPRIHGLARS--------KA----------E--------------LDEIVETSLRKAGLWEEVKDRLH 158 (267)
T ss_pred CCC-cHHHHHHHHHHhcccccc--------hH----------H--------------HHHHHHHHHHHcCCchhhhHHhh
Confidence 875 999999886543221000 00 0 0012345778888854 234
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ + .+|+.++|+.+++.+++|
T Consensus 159 ~~~~~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~-~tiiivtH~~~~~~~~~d 230 (267)
T PRK14235 159 EPGTG-----LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--N-YTIVIVTHSMQQAARVSQ 230 (267)
T ss_pred CCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--C-CeEEEEEcCHHHHHhhCC
Confidence 44544 999999999999999999999999999999999999999999999864 4 456667778889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++++|++|+++.+|+.+++.
T Consensus 231 ~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 231 RTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999987763
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=326.49 Aligned_cols=216 Identities=25% Similarity=0.302 Sum_probs=172.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc--------ccceEEEecCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV--------PQRTCAYISQNDL 254 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--------~~~~~~yv~Q~d~ 254 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+...+|+|.++|+++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 46999999999999999999999999999999999999875223699999999875321 1356999999999
Q ss_pred CCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccc
Q 000506 255 HFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMV 334 (1458)
Q Consensus 255 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 334 (1458)
+++.+||+||+.+....... . ..... .. ..+ +....++.+++.+||++..|+.+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~---~------~~~~~--~~-~~~--------------~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTP---F------WRTCF--SW-FTR--------------EQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhccccc---c------hhhhc--cc-ccH--------------HHHHHHHHHHHHcCCHHHHhCCc
Confidence 99999999999875321000 0 00000 00 000 01113456889999988888887
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEE
Q 000506 335 GDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNII 414 (1458)
Q Consensus 335 g~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~ 414 (1458)
++ |||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++++.. +++++.++|+.+++.+++|+|+
T Consensus 151 ~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 151 ST-----LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND-GITVVVTLHQVDYALRYCERIV 224 (262)
T ss_pred cc-----cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 77 99999999999999999999999999999999999999999999997643 3566667788888999999999
Q ss_pred EEcCCeEEEEcChhhH
Q 000506 415 LLSEGQIVYQGPREKV 430 (1458)
Q Consensus 415 lL~~G~iv~~G~~~~~ 430 (1458)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=330.93 Aligned_cols=215 Identities=17% Similarity=0.219 Sum_probs=170.9
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcccEEEECCeecCCccc-------cceEEEecCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDL-KLTGKIKYCGHEFKEFVP-------QRTCAYISQND 253 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~-~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d 253 (1458)
...+|+|||++|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++||+|++
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 3569999999999999999999999999999999999986421 238999999998765432 24699999997
Q ss_pred C--CCCCCCHHHHHHHhhhhccC-CchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc--
Q 000506 254 L--HFGEMTVRETMDFSGRCLGV-GTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI-- 328 (1458)
Q Consensus 254 ~--~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-- 328 (1458)
. +.|.+||.+++.+....... +... .+. . +....+..+++.+||++
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~------~~~---------~--------------~~~~~~~~~L~~~gL~~~~ 149 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWW------QRF---------G--------------WRKRRAIELLHRVGIKDHK 149 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhcccccc------ccH---------H--------------HHHHHHHHHHHHCCCCChH
Confidence 5 67889999999764221100 0000 000 0 00112456899999975
Q ss_pred -cccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHH
Q 000506 329 -CADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAY 407 (1458)
Q Consensus 329 -~~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~ 407 (1458)
..++.+.+ |||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+.. +++++.++|+...+.
T Consensus 150 ~~~~~~p~~-----LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-g~tii~itHdl~~v~ 223 (330)
T PRK15093 150 DAMRSFPYE-----LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN-NTTILLISHDLQMLS 223 (330)
T ss_pred HHHhCCchh-----CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHH
Confidence 34555555 99999999999999999999999999999999999999999999997643 456777889999999
Q ss_pred hccCEEEEEcCCeEEEEcChhhHH
Q 000506 408 DLFDNIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 408 ~~~D~v~lL~~G~iv~~G~~~~~~ 431 (1458)
+++|+|++|++|+|++.|+.+++.
T Consensus 224 ~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 224 QWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999998874
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=322.04 Aligned_cols=207 Identities=24% Similarity=0.347 Sum_probs=166.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCeecCCcc-----ccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD--LKLTGKIKYCGHEFKEFV-----PQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 255 (1458)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+|. ...+|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 45999999999999999999999999999999999998751 113899999999875321 24569999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc----cccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD----ICAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 331 (1458)
++ +||+||+.|.....+.... .+ ....++.+++.+||. +..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKDK---------KE------------------------LDKIVEWALKKAALWDEVKDDLK 142 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCcH---------HH------------------------HHHHHHHHHHHcCCchhhhhHhh
Confidence 87 8999999886443221000 00 001233467777774 3345
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+++ ||||||||++||++++.+|++++|||||+|||+.++.++.+.|+++.+ + .+++.++|+.+++.+++|
T Consensus 143 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d 214 (251)
T PRK14270 143 KSALK-----LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSD 214 (251)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcC
Confidence 55544 999999999999999999999999999999999999999999999865 4 455666777889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++++|++|++++.|+.+++.
T Consensus 215 ~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 215 YTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEEEECCeEEEeCCHHHHh
Confidence 99999999999999998864
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=291.12 Aligned_cols=206 Identities=22% Similarity=0.332 Sum_probs=177.8
Q ss_pred cccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc----------------ccccc
Q 000506 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ----------------ATFAR 941 (1458)
Q Consensus 878 ~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~ 941 (1458)
++...+|++||+..+.|+++.|+|.|||||||+|++|.=+.+ +..|.|.+||..+.. ...|.
T Consensus 16 ~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs 93 (256)
T COG4598 16 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRT 93 (256)
T ss_pred cccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHH
Confidence 356779999999999999999999999999999999998766 579999999975310 12344
Q ss_pred eEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHH
Q 000506 942 VSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVE 1021 (1458)
Q Consensus 942 ~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~a 1021 (1458)
..|+|+|+.+++.++||.||+.-+.. . -...++.+..++++..|..+|+.+.+|.+.. .|||||+||++||||
T Consensus 94 ~L~mVFQ~FNLWsHmtvLeNViEaPv-h-VLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~-----~LSGGQQQR~aIARa 166 (256)
T COG4598 94 RLGMVFQHFNLWSHMTVLENVIEAPV-H-VLGVSKAEAIERAEKYLAKVGIAEKADAYPA-----HLSGGQQQRVAIARA 166 (256)
T ss_pred HhhHhhhhcchhHHHHHHHHHHhcch-H-hhcCCHHHHHHHHHHHHHHhCchhhhhcCcc-----ccCchHHHHHHHHHH
Confidence 67999999999999999999975432 1 1234566777889999999999999987743 799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCC
Q 000506 1022 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1022 L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~ 1094 (1458)
|+.+|+++++|||||.|||+-.-++.+.+++++++|+|.+++||.+.. ..+...+++.|.+ |.+...||+.
T Consensus 167 LameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P~ 237 (256)
T COG4598 167 LAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPPE 237 (256)
T ss_pred HhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCChH
Confidence 999999999999999999999999999999999999999999998764 5667799999986 7999999973
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=324.59 Aligned_cols=207 Identities=21% Similarity=0.240 Sum_probs=170.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCCCC--CCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDL--HFG 257 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 257 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999988 9999999998753221 346999999974 577
Q ss_pred CCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc-ccccccccC
Q 000506 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD-ICADTMVGD 336 (1458)
Q Consensus 258 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg~ 336 (1458)
.+||.|++.+..+...... .. + ....++.+++.+||. +..++.+.+
T Consensus 103 ~~tv~~~l~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~~ 149 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLE---------PE----------Q--------------REKQIIETLRQVGLLPDHASYYPHM 149 (267)
T ss_pred chhHHHHHHHHHHhccCCC---------HH----------H--------------HHHHHHHHHHHcCCChHHHhcCchh
Confidence 8899999987544211000 00 0 011235578999994 566766665
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEE
Q 000506 337 QMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416 (1458)
Q Consensus 337 ~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL 416 (1458)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.+++|++++|
T Consensus 150 -----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 150 -----LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQG-ISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred -----cCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-cEEEEEeCCHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999876434 45666778888999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000506 417 SEGQIVYQGPREKVL 431 (1458)
Q Consensus 417 ~~G~iv~~G~~~~~~ 431 (1458)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=354.89 Aligned_cols=206 Identities=25% Similarity=0.349 Sum_probs=175.2
Q ss_pred ceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcc----cccceEEEEccCCCCCCCC
Q 000506 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA----TFARVSGYCEQNDIHSPHV 956 (1458)
Q Consensus 881 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~~l 956 (1458)
+.+|+|||+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++.... ..++.++|++|++.+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 469999999999999999999999999999999999876 4789999999876421 2346799999999888999
Q ss_pred CHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000506 957 TVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1458)
Q Consensus 957 TV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTs 1036 (1458)
||+|++.+..........+.++..+.++++++.+++.+..++.+ ..|||||||||+||++|+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532111111123344567899999999988777665 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCCc
Q 000506 1037 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGR 1095 (1458)
Q Consensus 1037 gLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~~ 1095 (1458)
|||+.+...+++.|++++++|+|||+++|++. ++.+.||++++|++ |+++..|+...
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 99999999999999999888999999999986 57788999999985 79999988654
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=356.44 Aligned_cols=210 Identities=22% Similarity=0.384 Sum_probs=176.9
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|++|.++. ++.+|+|+|++|+|||.+||+|+||||||||+++|+|... +.+|+|++||.+.
T Consensus 473 ~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i 538 (708)
T TIGR01193 473 DIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSL 538 (708)
T ss_pred cEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEH
Confidence 5899999998841 2469999999999999999999999999999999999987 4789999999986
Q ss_pred C---cccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000506 935 N---QATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-------LTNAMVGLPG 1004 (1458)
Q Consensus 935 ~---~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 1004 (1458)
. ...+++.+|||+|++.+++. |++||+.++.. .+.+. +.+.++++..++.+ -.|+.+|..
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~- 608 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK----ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEE- 608 (708)
T ss_pred HHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC----CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCC-
Confidence 4 34577899999999998864 99999987521 12222 23566666666643 346777754
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.+|++++|++
T Consensus 609 G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~- 683 (708)
T TIGR01193 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH- 683 (708)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999985 4899999999985 5678999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|+++..|+.
T Consensus 684 G~i~~~G~~ 692 (708)
T TIGR01193 684 GKIIEQGSH 692 (708)
T ss_pred CEEEEECCH
Confidence 799999984
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=352.56 Aligned_cols=123 Identities=24% Similarity=0.312 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCCEEE
Q 000506 955 HVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL-TNAMVGLPGVDGLSTEQRKRLTIAVELVA---NPSIIF 1030 (1458)
Q Consensus 955 ~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~ia~aL~~---~p~ill 1030 (1458)
.+||.|.+.|...+. . .....++++.+||... .+.. .+.|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 466777776654321 0 1124578888999753 3444 34799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe-----cCcEEEEeCCC
Q 000506 1031 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-----RGGQVIYAGPL 1093 (1458)
Q Consensus 1031 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~-----~gG~~~~~G~~ 1093 (1458)
|||||+|||+.+...+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999985 446799999994 57899999985
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=305.25 Aligned_cols=168 Identities=27% Similarity=0.434 Sum_probs=149.4
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEccc
Confidence 4677777653 2358999999999999999999999999999999999876 478999999987643
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000506 937 --ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014 (1458)
Q Consensus 937 --~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1014 (1458)
...++.++|++|++.+++..||+|++. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567999999999888899999873 8999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1015 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. ++.+.+|++++|++|
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999877999999999986 577789999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=304.00 Aligned_cols=214 Identities=21% Similarity=0.315 Sum_probs=188.3
Q ss_pred cccccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccccceEEEecCCCCC
Q 000506 176 LPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLH 255 (1458)
Q Consensus 176 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~ 255 (1458)
++++.+.+++++|+||.++||+|++++|||||||||.+++|.|++.|+ +|+|+++|.+++... +.+|||+|.+--+
T Consensus 8 vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGL 83 (300)
T COG4152 8 VTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGL 83 (300)
T ss_pred chhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhcc
Confidence 345567788999999999999999999999999999999999999998 999999999887543 4579999999999
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 335 (1458)
++.+||.|.|.|-++++|.... + .....+..|+.+++......+|-
T Consensus 84 y~k~tv~dql~yla~LkGm~~~-----e-----------------------------~~~~~~~wLer~~i~~~~~~kIk 129 (300)
T COG4152 84 YPKMTVEDQLKYLAELKGMPKA-----E-----------------------------IQKKLQAWLERLEIVGKKTKKIK 129 (300)
T ss_pred CccCcHHHHHHHHHHhcCCcHH-----H-----------------------------HHHHHHHHHHhccccccccchHH
Confidence 9999999999999999876421 1 11234668999999888888877
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEE
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~l 415 (1458)
+ ||-|.+|++.+-.+++.+|++++||||+|||||.++..+-+.+.++... +++|+..+|.++.+.++||++++
T Consensus 130 ~-----LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~--GatIifSsH~Me~vEeLCD~llm 202 (300)
T COG4152 130 E-----LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE--GATIIFSSHRMEHVEELCDRLLM 202 (300)
T ss_pred H-----hhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhc--CCEEEEecchHHHHHHHhhhhhe
Confidence 6 9999999999999999999999999999999999999999999999763 45556667889999999999999
Q ss_pred EcCCeEEEEcChhhHHHHH
Q 000506 416 LSEGQIVYQGPREKVLEFF 434 (1458)
Q Consensus 416 L~~G~iv~~G~~~~~~~~F 434 (1458)
|++|+.|.+|+.+++..-|
T Consensus 203 L~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 203 LKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred ecCCceEEeccHHHHHHhc
Confidence 9999999999999998743
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=311.25 Aligned_cols=178 Identities=25% Similarity=0.331 Sum_probs=151.9
Q ss_pred ceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc-----ccccceEEEEccCCC-CCC
Q 000506 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ-----ATFARVSGYCEQNDI-HSP 954 (1458)
Q Consensus 881 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~-~~~ 954 (1458)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++. ...
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 569999999999999999999999999999999999876 478999999987631 134567999999973 333
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000506 955 HVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP 1034 (1458)
Q Consensus 955 ~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEP 1034 (1458)
..||+||+.+..... ..+.++..+.++++++.++|.+..++.+ ..||||||||++||+||+.+|++|+||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 579999999865422 2233444567889999999988777764 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 000506 1035 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1458)
Q Consensus 1035 TsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s 1068 (1458)
|+|||+.+...+.+.|++++++|+|||+++|++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999878999999999874
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=323.98 Aligned_cols=218 Identities=19% Similarity=0.231 Sum_probs=174.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1458)
.+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478999988763 246899999999999999999999999999999999975421 2689999999
Q ss_pred eeCC-----cccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000506 932 YPKN-----QATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD 1006 (1458)
Q Consensus 932 ~~~~-----~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1006 (1458)
.+.. ...+++.++|++|++.+++ .||.||+.+....+. .. .+.++.++++++.+++.+..+.... ..+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCcc
Confidence 8753 1234567999999988887 499999988654321 11 1233456778888887532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEec---
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR--- 1083 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~--- 1083 (1458)
.||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|++. ++.+.||++++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999975 589999999986 68899999999972
Q ss_pred -----CcEEEEeCCC
Q 000506 1084 -----GGQVIYAGPL 1093 (1458)
Q Consensus 1084 -----gG~~~~~G~~ 1093 (1458)
.|++++.|+.
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 4799999875
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=365.71 Aligned_cols=216 Identities=27% Similarity=0.450 Sum_probs=182.8
Q ss_pred ccccccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecC
Q 000506 175 ILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQ 251 (1458)
Q Consensus 175 ~~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q 251 (1458)
+.++.++..+||+|+|+++++|+.+||+|||||||||...+|-..++|+ +|+|.++|+++++.+. |+++|.|+|
T Consensus 995 F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQ 1071 (1228)
T KOG0055|consen 995 FAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQ 1071 (1228)
T ss_pred eeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceecc
Confidence 3456678889999999999999999999999999999999999999998 9999999999998765 688999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccc
Q 000506 252 NDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICAD 331 (1458)
Q Consensus 252 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d 331 (1458)
+|.||.. |+||||.|+... . ..+++++|+.+++ ..+. +.+|++..|
T Consensus 1072 EP~LF~~-TIrENI~YG~~~--v-----------------------s~~eIi~Aak~AN-----aH~F---I~sLP~GyD 1117 (1228)
T KOG0055|consen 1072 EPVLFNG-TIRENIAYGSEE--V-----------------------SEEEIIEAAKLAN-----AHNF---ISSLPQGYD 1117 (1228)
T ss_pred Cchhhcc-cHHHHHhccCCC--C-----------------------CHHHHHHHHHHhh-----hHHH---HhcCcCccc
Confidence 9999966 999999997210 1 1123344444332 2233 346999999
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
|.||+. ...||||||||++||||+++||+||||||.||+||+++..-+.+.|.+... ++|+|++.|.. .+.+.+|
T Consensus 1118 T~vGer-G~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~--gRT~IvIAHRL--STIqnaD 1192 (1228)
T KOG0055|consen 1118 TRVGER-GVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME--GRTTIVIAHRL--STIQNAD 1192 (1228)
T ss_pred CccCcc-cCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc--CCcEEEEecch--hhhhcCC
Confidence 999983 233999999999999999999999999999999999999999999999864 67887766554 5788999
Q ss_pred EEEEEcCCeEEEEcChhhHHH
Q 000506 412 NIILLSEGQIVYQGPREKVLE 432 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~~ 432 (1458)
.|+|+++|+|+++|+.++++.
T Consensus 1193 ~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1193 VIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred EEEEEECCEEEecccHHHHHh
Confidence 999999999999999999875
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=311.18 Aligned_cols=197 Identities=28% Similarity=0.455 Sum_probs=173.5
Q ss_pred eceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc-------ccceEEEecCCCCCCCCC
Q 000506 187 KDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV-------PQRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 187 ~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~l 259 (1458)
=++++..+.-.+|||-|+||||||||+|+|+|+++|+ +|.|.+||+.+.+.. .+|.+|||+|+..+||++
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 3677887775799999999999999999999999999 999999999764321 257899999999999999
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
||+-||.|+...- .....|.+.+.||++|..+.++..
T Consensus 92 tVrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~R~P~~--- 128 (352)
T COG4148 92 TVRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLDRYPGT--- 128 (352)
T ss_pred EEecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHhhCCCc---
Confidence 9999999964311 001236688999999999999887
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCC
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G 419 (1458)
|||||||||+|||||++.|++|+||||.+.||-..+.+++-.|.++.++.+ .-|+.++|..+|+.+++|+|++|++|
T Consensus 129 --LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~-IPIlYVSHS~~Ev~RLAd~vV~le~G 205 (352)
T COG4148 129 --LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEIN-IPILYVSHSLDEVLRLADRVVVLENG 205 (352)
T ss_pred --cCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcC-CCEEEEecCHHHHHhhhheEEEecCC
Confidence 999999999999999999999999999999999999999999999998754 55667788899999999999999999
Q ss_pred eEEEEcChhhHHH
Q 000506 420 QIVYQGPREKVLE 432 (1458)
Q Consensus 420 ~iv~~G~~~~~~~ 432 (1458)
++...|+.+++..
T Consensus 206 kV~A~g~~e~v~~ 218 (352)
T COG4148 206 KVKASGPLEEVWG 218 (352)
T ss_pred eEEecCcHHHHhc
Confidence 9999999999853
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=321.69 Aligned_cols=215 Identities=27% Similarity=0.328 Sum_probs=174.2
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCee-
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP- 933 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~- 933 (1458)
.++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 378889888763 2358999999999999999999999999999999999876 478999999976
Q ss_pred ----CCcc-------cccceEEEEccCCC--CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 000506 934 ----KNQA-------TFARVSGYCEQNDI--HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-LTNAM 999 (1458)
Q Consensus 934 ----~~~~-------~~~~~~gyv~Q~~~--~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ 999 (1458)
.... ..++.++|++|++. ..+.+|+.|++.+..... .. ....+..+.++++++.+++.+ ..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 3211 12356899999975 446679999987543211 11 111233467889999999963 55554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceE
Q 000506 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1078 (1458)
Q Consensus 1000 vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~v 1078 (1458)
+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.+.+|++
T Consensus 146 ~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 P-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred c-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 3 479999999999999999999999999999999999999999999998764 899999999986 577789999
Q ss_pred EEEecCcEEEEeCCC
Q 000506 1079 LLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1079 lll~~gG~~~~~G~~ 1093 (1458)
++|++ |++++.|+.
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99985 789988874
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=318.23 Aligned_cols=201 Identities=24% Similarity=0.418 Sum_probs=169.4
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-cceEEEecCCCCCCCCCCHHHHHH
Q 000506 188 DVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEMTVRETMD 266 (1458)
Q Consensus 188 ~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 266 (1458)
|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999987 9999999998764322 357999999999999999999998
Q ss_pred HhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCCCChHH
Q 000506 267 FSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQ 346 (1458)
Q Consensus 267 f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGLSGGq 346 (1458)
+.... .... . .. ....++.+++.+||++..|+.+.. |||||
T Consensus 94 ~~~~~-~~~~--~--~~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLKL--N--AA-----------------------------QREKLHAIARQMGIEDLLARLPGQ-----LSGGQ 134 (232)
T ss_pred ccccc-ccCC--C--HH-----------------------------HHHHHHHHHHHcCcHHHHhCCccc-----CCHHH
Confidence 75321 0000 0 00 011245578899999888888876 99999
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeEEEEcC
Q 000506 347 KKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGP 426 (1458)
Q Consensus 347 kkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~iv~~G~ 426 (1458)
||||+||++++.+|++++|||||+|||+.++..+.+.|+++.+..+ ++++.++|+.+++.+++|++++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ-LTLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999876434 455667788889999999999999999999999
Q ss_pred hhhHH
Q 000506 427 REKVL 431 (1458)
Q Consensus 427 ~~~~~ 431 (1458)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=321.82 Aligned_cols=198 Identities=25% Similarity=0.378 Sum_probs=169.5
Q ss_pred ecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc---ccccceEEEEccCCCCCCCCCHH
Q 000506 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATFARVSGYCEQNDIHSPHVTVY 959 (1458)
Q Consensus 883 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTV~ 959 (1458)
+|+|+|+++++||+++|+|+||||||||+++|+|..+ .+|+|.++|.+... ...++.++|++|++.+++.+||+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999874 38999999987643 22345689999998888889999
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 000506 960 ESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVA-------NPSIIFMD 1032 (1458)
Q Consensus 960 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~-------~p~illLD 1032 (1458)
||+.+.... ....++..+.++++++.++|.+..++.+ ..||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 1122333557889999999987777654 4799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCC
Q 000506 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~ 1094 (1458)
|||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+..
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999877999999999986 57889999999985 7899988753
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=326.39 Aligned_cols=208 Identities=26% Similarity=0.347 Sum_probs=169.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc---ccceEEEecCCCC-CCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV---PQRTCAYISQNDL-HFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 258 (1458)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+...+|+|.++|+++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 35999999999999999999999999999999999999886212399999999886432 2457999999974 5677
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
.||+||+.|..+..+.. +.+ ....++.+++.+||++..++.+.+
T Consensus 100 ~tv~enl~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~~-- 143 (282)
T PRK13640 100 ATVGDDVAFGLENRAVP----------RPE------------------------MIKIVRDVLADVGMLDYIDSEPAN-- 143 (282)
T ss_pred CCHHHHHHhhHHhCCCC----------HHH------------------------HHHHHHHHHHHCCChhHhcCCccc--
Confidence 89999998754322110 000 011245578899999888888766
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+. +|+.++|+.+++ ..+|++++|++
T Consensus 144 ---LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~-tvli~tH~~~~~-~~~d~i~~l~~ 218 (282)
T PRK13640 144 ---LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNL-TVISITHDIDEA-NMADQVLVLDD 218 (282)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEecCHHHH-HhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999998764344 455556666777 57999999999
Q ss_pred CeEEEEcChhhHH
Q 000506 419 GQIVYQGPREKVL 431 (1458)
Q Consensus 419 G~iv~~G~~~~~~ 431 (1458)
|++++.|+++++.
T Consensus 219 G~i~~~g~~~~~~ 231 (282)
T PRK13640 219 GKLLAQGSPVEIF 231 (282)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998874
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=320.75 Aligned_cols=208 Identities=24% Similarity=0.311 Sum_probs=167.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD--DDLKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
+++|+|+|++|++||+++|+|||||||||||++|+|+++ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 469999999999999999999999999999999999986 3111389999999987532 124679999999999
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc----ccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI----CAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~d 331 (1458)
++.+||+||+.+..+..+.... . +. ...++.+++.+||.. ..+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~---------~----------~~--------------~~~~~~~l~~~~l~~~~~~~~~ 143 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVNR---------S----------EA--------------DEIVESSLKRVALWDEVKDRLK 143 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCCH---------H----------HH--------------HHHHHHHHHHcCCchhhhHHhh
Confidence 9999999999875432110000 0 00 012345677888753 334
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+++ |||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++++ + ++|+.++|+.+++.+++|
T Consensus 144 ~~~~~-----LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d 215 (252)
T PRK14256 144 SNAME-----LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSD 215 (252)
T ss_pred CCcCc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCC
Confidence 44444 999999999999999999999999999999999999999999999964 4 456667788889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++++|++|+++..|+.+++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 216 YTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=318.93 Aligned_cols=209 Identities=27% Similarity=0.419 Sum_probs=169.1
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.+.. ..+.+|+|+|+++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhH
Confidence 677888876531 12459999999999999999999999999999999999876 47899999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCCCC
Q 000506 936 Q---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG------LPGVD 1006 (1458)
Q Consensus 936 ~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg------~~~~~ 1006 (1458)
. ...++.++|++|++..++ .||.|++.+... ... .+.++++++.+++.+..+.... .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 234567999999998776 699999976421 111 2345678888888776665431 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +|||+++|++. . .+.+|++++|++ |+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~-~~~~d~v~~l~~-g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-L-LDLVDRIIVMDS-GR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-H-HHhCCEEEEEeC-Ce
Confidence 89999999999999999999999999999999999999999999998764 89999999986 3 479999999986 67
Q ss_pred EEEeC
Q 000506 1087 VIYAG 1091 (1458)
Q Consensus 1087 ~~~~G 1091 (1458)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 77654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=322.80 Aligned_cols=208 Identities=24% Similarity=0.345 Sum_probs=166.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDL--KLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|.- ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 469999999999999999999999999999999999986410 1389999999987421 124579999999999
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc----cccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD----ICAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 331 (1458)
++.+||+||+.++....+... +. + ....++.+++.+||. +..+
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 143 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNGVRN---------KK----------D--------------LDELVEKSLRGANLWNEVKDRLD 143 (258)
T ss_pred CCCCcHHHHHHHHHHhcCCCC---------HH----------H--------------HHHHHHHHHHHcCCchhhhhHhh
Confidence 999999999987654221100 00 0 011234567788874 3445
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ + ++++.++|+.+++.+++|
T Consensus 144 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tviivsH~~~~~~~~~d 215 (258)
T PRK14241 144 KPGGG-----LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--D-YTIVIVTHNMQQAARVSD 215 (258)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHHHhCC
Confidence 55555 999999999999999999999999999999999999999999999853 4 456667788889999999
Q ss_pred EEEEEc------CCeEEEEcChhhHH
Q 000506 412 NIILLS------EGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~------~G~iv~~G~~~~~~ 431 (1458)
+|++|+ +|++++.|+++++.
T Consensus 216 ~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 216 QTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEEecccCCCCceEEecCCHHHHH
Confidence 999996 79999999988764
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=318.75 Aligned_cols=230 Identities=20% Similarity=0.275 Sum_probs=181.1
Q ss_pred eEEEEeeeeeEeecc----hhhhh--ccc-ccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeE
Q 000506 854 LSLAFHHVNYSVDMP----AEMKA--QGI-EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGD 926 (1458)
Q Consensus 854 ~~l~~~~l~~~~~~~----~~~~~--~~~-~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~ 926 (1458)
+++.++|+...++.. ..++. .+. ....+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 457778876655431 11221 111 1234679999999999999999999999999999999999876 47899
Q ss_pred EEECCeeCCcccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000506 927 ISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD 1006 (1458)
Q Consensus 927 i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1006 (1458)
|.++|. +++++|+....+.+||.|++.+..... ..+.++..+.++++++.+++.+..+..+ +
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----K 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----c
Confidence 999995 356777777778899999998764332 2234444556788899999988777654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
.||||||||++||++|+.+|++|+|||||+|||+.+...+++.|+++++.|+|||+++|++. ++.+.+|++++|++ |+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999877999999999975 57788999999985 78
Q ss_pred EEEeCCCCcchHHHHHHHH
Q 000506 1087 VIYAGPLGRQSQKLVEYFE 1105 (1458)
Q Consensus 1087 ~~~~G~~~~~~~~~~~~f~ 1105 (1458)
++..|+.....+...+||.
T Consensus 221 i~~~g~~~~~~~~~~~~~~ 239 (264)
T PRK13546 221 LKDYGELDDVLPKYEAFLN 239 (264)
T ss_pred EEEeCCHHHHHHHhHHHHH
Confidence 9888886432233333443
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=364.43 Aligned_cols=211 Identities=28% Similarity=0.449 Sum_probs=177.8
Q ss_pred eEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCee
Q 000506 854 LSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP 933 (1458)
Q Consensus 854 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1458)
..++|+|++|.++. ++++|+|+|++++|||.+||+||||||||||++.|.|..+ +.+|+|.+||++
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEe
Confidence 35999999999852 3579999999999999999999999999999999999887 479999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCC
Q 000506 934 KNQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVE-------LEPLTNAMVGLP 1003 (1458)
Q Consensus 934 ~~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~ 1003 (1458)
+.. ..+++.++||+|++.++. -||+||+.++.. +.++++ ++++++..+ +.+..|+.+|.
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vge- 461 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEE----IEEALKLANAHEFIANLPDGYDTIVGE- 461 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHH----HHHHHHHhChHHHHHhCcccccceecC-
Confidence 654 567889999999999987 899999998631 223332 344444333 23357899984
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEec
Q 000506 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1083 (1458)
Q Consensus 1004 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~ 1083 (1458)
+...||||||||++||||+++||+||+||||||+||+.+...|++.++++. +++|+|+++|+++ ....+|++++|++
T Consensus 462 ~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~ 538 (567)
T COG1132 462 RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN 538 (567)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC
Confidence 445799999999999999999999999999999999999999999999876 6789999999986 3455999999986
Q ss_pred CcEEEEeCCC
Q 000506 1084 GGQVIYAGPL 1093 (1458)
Q Consensus 1084 gG~~~~~G~~ 1093 (1458)
|++++.|+.
T Consensus 539 -G~i~e~G~h 547 (567)
T COG1132 539 -GRIVERGTH 547 (567)
T ss_pred -CEEEEecCH
Confidence 789999985
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=322.34 Aligned_cols=207 Identities=23% Similarity=0.349 Sum_probs=164.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD--DDLKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
+++|+|+|++|++||+++|+|||||||||||++|+|.++ |+...+|+|.++|+++... ..++.++|++|++.+
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 459999999999999999999999999999999999986 3212389999999987531 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc----ccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI----CAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~d 331 (1458)
++. ||+||+.|..+..+.... .+ . ...++.+++.+||.+ ..+
T Consensus 105 ~~~-tv~enl~~~~~~~~~~~~---------~~----------~--------------~~~~~~~l~~~~l~~~~~~~l~ 150 (259)
T PRK14274 105 FPQ-SIFDNVAYGPRIHGTKNK---------KK----------L--------------QEIVEKSLKDVALWDEVKDRLH 150 (259)
T ss_pred ccc-CHHHHHHhHHHhcCCCCH---------HH----------H--------------HHHHHHHHHHcCCchhhhhhhh
Confidence 875 999999876432211000 00 0 011334677777753 234
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + .+++.++|+.+++.+++|
T Consensus 151 ~~~~~-----LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~~~~~~d 222 (259)
T PRK14274 151 TQALS-----LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--K-YTIVIVTHNMQQAARVSD 222 (259)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEEcCHHHHHHhCC
Confidence 44444 999999999999999999999999999999999999999999999853 4 455666777889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++++|++|+++.+|+++++.
T Consensus 223 ~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 223 QTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred EEEEEECCEEEEECCHHHHh
Confidence 99999999999999998864
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=316.97 Aligned_cols=204 Identities=29% Similarity=0.451 Sum_probs=172.2
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc-ccceEEEecCCCCCCCCCCHHH
Q 000506 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV-PQRTCAYISQNDLHFGEMTVRE 263 (1458)
Q Consensus 185 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 263 (1458)
+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 899999999999999999999999999999999999998 999999999876532 2457999999999999999999
Q ss_pred HHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 000506 264 TMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVS 343 (1458)
Q Consensus 264 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGLS 343 (1458)
|+.+.....+... .+. ...+..+++.+||.+..++.+.+ ||
T Consensus 91 ~l~~~~~~~~~~~--------------------~~~--------------~~~~~~~l~~~~l~~~~~~~~~~-----LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK--------------------KEI--------------ERKVLEIAEMLGIDHLLNRKPET-----LS 131 (235)
T ss_pred HHHHHHHHcCCCH--------------------HHH--------------HHHHHHHHHHcCChhHHhcCccc-----CC
Confidence 9987643221100 000 01234478889998888888876 99
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeEEE
Q 000506 344 GGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVY 423 (1458)
Q Consensus 344 GGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~iv~ 423 (1458)
|||||||+||+|++.+|++++|||||+|||+.++.++.+.|++++...+. +++.++|+.+++.+++|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~-tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV-TVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998764344 55556677888999999999999999999
Q ss_pred EcChhhHH
Q 000506 424 QGPREKVL 431 (1458)
Q Consensus 424 ~G~~~~~~ 431 (1458)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=313.62 Aligned_cols=197 Identities=27% Similarity=0.359 Sum_probs=165.9
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 67888887663 2458999999999999999999999999999999999876 47899999998753
Q ss_pred cccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000506 936 QATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKR 1015 (1458)
Q Consensus 936 ~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1015 (1458)
....++.++|++|++.+++..||+|++.+....+. .. .+.++++++.+||.+..+..+ +.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22256679999999988889999999987543321 11 234789999999987666654 4799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1016 l~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
++||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||+++|++. ++. . |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~-~-~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLP-G-ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhc-c-CcEEeec
Confidence 99999999999999999999999999999999999998878999999999975 344 3 8887774
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=320.02 Aligned_cols=208 Identities=21% Similarity=0.302 Sum_probs=165.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc---ccceEEEecCCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV---PQRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 259 (1458)
+.+|+|+|+++++||+++|+||||||||||+++|+|+++|....+|+|.++|+++.... .++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 46999999999999999999999999999999999997531122899999999886532 2457999999998887 6
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc----ccccccc
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI----CADTMVG 335 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~dt~vg 335 (1458)
||+||+.++.+.++..... .. .....+.+++.+||.. ..+..+
T Consensus 94 tv~eni~~~~~~~~~~~~~------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~~~- 140 (246)
T PRK14269 94 SIYENISYAPKLHGMIKNK------------------DE--------------EEALVVDCLQKVGLFEEVKDKLKQNA- 140 (246)
T ss_pred cHHHHhhhHHhhcCcccCh------------------HH--------------HHHHHHHHHHHcCCChhhhHHhcCCc-
Confidence 9999998864332110000 00 0112345788888843 234443
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEE
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~l 415 (1458)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++++.++|+.+++.+++|++++
T Consensus 141 ----~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~i~~ 213 (246)
T PRK14269 141 ----LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--N-LSMIMVTHNMQQGKRVADYTAF 213 (246)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEecCHHHHHhhCcEEEE
Confidence 44999999999999999999999999999999999999999999999853 4 4566677888899999999999
Q ss_pred EcCCeEEEEcChhhHH
Q 000506 416 LSEGQIVYQGPREKVL 431 (1458)
Q Consensus 416 L~~G~iv~~G~~~~~~ 431 (1458)
|++|++++.|+.+++.
T Consensus 214 l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 214 FHLGELIEFGESKEFF 229 (246)
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999988764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=313.83 Aligned_cols=197 Identities=28% Similarity=0.421 Sum_probs=163.8
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc-------cccceEEEecCCC
Q 000506 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF-------VPQRTCAYISQND 253 (1458)
Q Consensus 181 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d 253 (1458)
+++.+ |+|+++++ |+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++
T Consensus 11 ~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 84 (214)
T cd03297 11 PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQY 84 (214)
T ss_pred CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCC
Confidence 34445 99999999 999999999999999999999999987 99999999886431 1245799999999
Q ss_pred CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccc
Q 000506 254 LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTM 333 (1458)
Q Consensus 254 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 333 (1458)
.+++.+||+||+.+..... .. . . ....++.+++.+||++..++.
T Consensus 85 ~~~~~~t~~~~l~~~~~~~---~~-----~---~-------------------------~~~~~~~~l~~~~l~~~~~~~ 128 (214)
T cd03297 85 ALFPHLNVRENLAFGLKRK---RN-----R---E-------------------------DRISVDELLDLLGLDHLLNRY 128 (214)
T ss_pred ccCCCCCHHHHHHHHHhhC---CH-----H---H-------------------------HHHHHHHHHHHcCCHhHhhcC
Confidence 9999999999998753211 00 0 0 011234578899998877777
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEE
Q 000506 334 VGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413 (1458)
Q Consensus 334 vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v 413 (1458)
+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+ ++++.++|+.+++.+++|++
T Consensus 129 ~~~-----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i 202 (214)
T cd03297 129 PAQ-----LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN-IPVIFVTHDLSEAEYLADRI 202 (214)
T ss_pred ccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC-cEEEEEecCHHHHHHhcCEE
Confidence 766 999999999999999999999999999999999999999999999976434 45666778888999999999
Q ss_pred EEEcCCeEEEEc
Q 000506 414 ILLSEGQIVYQG 425 (1458)
Q Consensus 414 ~lL~~G~iv~~G 425 (1458)
++|++|+++.+|
T Consensus 203 ~~l~~G~i~~~g 214 (214)
T cd03297 203 VVMEDGRLQYIG 214 (214)
T ss_pred EEEECCEEEecC
Confidence 999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=321.32 Aligned_cols=215 Identities=22% Similarity=0.269 Sum_probs=175.1
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1458)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 16 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g 82 (265)
T PRK14252 16 KSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHP 82 (265)
T ss_pred eEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcC
Confidence 588999998773 246999999999999999999999999999999999986531 2689999999
Q ss_pred eeCC-------cccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccccc
Q 000506 932 YPKN-------QATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMV 1000 (1458)
Q Consensus 932 ~~~~-------~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v 1000 (1458)
.+.. ...+++.++|++|++.+++. ||+||+.+...... .. .....++.++++++.+++.+ ..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~-~~-~~~~~~~~~~~~l~~~~l~~~l~~~~~~~- 158 (265)
T PRK14252 83 DNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG-VK-RRSILEERVENALRNAALWDEVKDRLGDL- 158 (265)
T ss_pred ccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC-CC-hHHHHHHHHHHHHHHcCCchhhhHHHhCC-
Confidence 7642 12345679999999988886 99999987643221 11 11222456788888888742 22333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEE
Q 000506 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1080 (1458)
Q Consensus 1001 g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vll 1080 (1458)
...||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ ++.+.+|++++
T Consensus 159 ----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~ 232 (265)
T PRK14252 159 ----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAY 232 (265)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999865 699999999986 57789999999
Q ss_pred EecCcEEEEeCCC
Q 000506 1081 MKRGGQVIYAGPL 1093 (1458)
Q Consensus 1081 l~~gG~~~~~G~~ 1093 (1458)
|++ |+++..|+.
T Consensus 233 l~~-G~i~~~g~~ 244 (265)
T PRK14252 233 MYM-GELIEFGAT 244 (265)
T ss_pred EEC-CEEEEeCCH
Confidence 985 788888875
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=319.98 Aligned_cols=219 Identities=22% Similarity=0.301 Sum_probs=176.4
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCC---CceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1458)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|.... .+.+|+|.+||
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 467888887763 24599999999999999999999999999999999997531 13689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD 1006 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 1006 (1458)
.+... ...++.++|++|++.+++. |+.||+.+...... ....+..++++.++++.+++.+....... ....
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLD-KSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcc
Confidence 87642 2345679999999988875 99999987643221 11223345678889999988542211111 2245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999854 899999999986 68888999999985 78
Q ss_pred EEEeCCC
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~~~G~~ 1093 (1458)
+++.|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14266 223 IIESGLT 229 (250)
T ss_pred EEEeCCH
Confidence 9998875
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=320.76 Aligned_cols=206 Identities=22% Similarity=0.302 Sum_probs=165.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC---CCCCCCcccEEEECCeecCCc-----cccceEEEecCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGK---LDDDLKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDL 254 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~---~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~ 254 (1458)
+++|+|+|+++++||+++|+||||||||||+++|+|. .++. ..+|+|.++|+++... ..++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 4699999999999999999999999999999999997 3331 1389999999987542 12456999999988
Q ss_pred CCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc----cc
Q 000506 255 HFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI----CA 330 (1458)
Q Consensus 255 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~ 330 (1458)
+++ .||+||+.++.+..+.... + . ....++.+++.+||.+ ..
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~~-----~--------------~--------------~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKDN-----A--------------F--------------IRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCcH-----H--------------H--------------HHHHHHHHHHHcCCCcchhhhh
Confidence 887 5999999876443211000 0 0 0012345778888854 23
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhcc
Q 000506 331 DTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLF 410 (1458)
Q Consensus 331 dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~ 410 (1458)
+..+.+ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.+++
T Consensus 141 ~~~~~~-----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~~~~~~ 212 (250)
T PRK14245 141 KESAFA-----LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK--D-YTIVIVTHNMQQAARVS 212 (250)
T ss_pred hCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHhhC
Confidence 444444 999999999999999999999999999999999999999999999853 4 45666778888999999
Q ss_pred CEEEEEcCCeEEEEcChhhHH
Q 000506 411 DNIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 411 D~v~lL~~G~iv~~G~~~~~~ 431 (1458)
|++++|++|++++.|+++++.
T Consensus 213 d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 213 DKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred CEEEEEECCEEEEECCHHHHh
Confidence 999999999999999998874
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=324.82 Aligned_cols=211 Identities=20% Similarity=0.292 Sum_probs=173.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++. +...+|+|||++|++||+++|+|+||||||||+++|+|... .+|+|.++|.+.
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 3788999988741 12458999999999999999999999999999999999875 479999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccC------CCC
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGL------PGV 1005 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~------~~~ 1005 (1458)
.. ..+++.++||+|++.+++ .||+||+.... ... .+.+.+.++.+||.+..+..++. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 345678999999999887 49999995321 111 23467788899998765554321 133
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1006 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
..||||||||++|||||+.+|+||+|||||+|||+.+...+++.|+++. .++|||+++|++. .+ ..||++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 5699999999999999999999999999999999999999999999874 4899999999985 34 45999999985 7
Q ss_pred EEEEeCCCC
Q 000506 1086 QVIYAGPLG 1094 (1458)
Q Consensus 1086 ~~~~~G~~~ 1094 (1458)
++++.|++.
T Consensus 213 ~i~~~g~~~ 221 (275)
T cd03289 213 KVRQYDSIQ 221 (275)
T ss_pred eEeecCCHH
Confidence 899999863
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=317.12 Aligned_cols=206 Identities=28% Similarity=0.429 Sum_probs=172.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-cceEEEecCCCCCCCCCCH
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEMTV 261 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 261 (1458)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 46999999999999999999999999999999999999987 9999999998764332 4579999999999999999
Q ss_pred HHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCC
Q 000506 262 RETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRG 341 (1458)
Q Consensus 262 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 341 (1458)
+||+.+..+..+... .+ .....+.+++.++|....|+.+++
T Consensus 90 ~enl~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (237)
T TIGR00968 90 RDNIAFGLEIRKHPK----------AK------------------------IKARVEELLELVQLEGLGDRYPNQ----- 130 (237)
T ss_pred HHHHHhHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCHhHhhCChhh-----
Confidence 999987644321100 00 001234578889998777877766
Q ss_pred CChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeE
Q 000506 342 VSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421 (1458)
Q Consensus 342 LSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~i 421 (1458)
||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++..+ .+++.++|..+++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~-~tvli~sH~~~~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH-VTTVFVTHDQEEAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865324 4555566777889999999999999999
Q ss_pred EEEcChhhHH
Q 000506 422 VYQGPREKVL 431 (1458)
Q Consensus 422 v~~G~~~~~~ 431 (1458)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999988764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=311.95 Aligned_cols=199 Identities=24% Similarity=0.327 Sum_probs=166.7
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc-ccceEEEecCCCCCCCCCCHHH
Q 000506 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV-PQRTCAYISQNDLHFGEMTVRE 263 (1458)
Q Consensus 185 iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 263 (1458)
+++|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999999988 999999999875432 3467999999999999999999
Q ss_pred HHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 000506 264 TMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVS 343 (1458)
Q Consensus 264 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGLS 343 (1458)
|+.+...... ... . .....++.+++.+||++..++.+.+ ||
T Consensus 90 n~~~~~~~~~-~~~-------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KLN-------------------A--------------EQQEKVVDAAQQVGIADYLDRLPEQ-----LS 130 (213)
T ss_pred HHHhHhhccC-Ccc-------------------H--------------HHHHHHHHHHHHcCcHHHhhCCccc-----CC
Confidence 9987432100 000 0 0011234578899998888888776 99
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCCeEEE
Q 000506 344 GGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVY 423 (1458)
Q Consensus 344 GGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G~iv~ 423 (1458)
||||||++||++++.+|++++|||||+|||..++..+.+.|+++.+.. +++++.++|+.+++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~-~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSER-QRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 999999999999999999999999999999999999999999987533 4566667788889999999999999999998
Q ss_pred EcC
Q 000506 424 QGP 426 (1458)
Q Consensus 424 ~G~ 426 (1458)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=326.64 Aligned_cols=212 Identities=28% Similarity=0.433 Sum_probs=178.7
Q ss_pred ccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCCCCCCC
Q 000506 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHFG 257 (1458)
Q Consensus 181 ~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 257 (1458)
.++++|+|+||.+.+||.++|+||||||||||.++|.|..+|. +|.|.++|-+++..+. .+.|||.||+-.+|+
T Consensus 347 ~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~ 423 (580)
T COG4618 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD 423 (580)
T ss_pred CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecC
Confidence 3467999999999999999999999999999999999999997 9999999998876554 378999999999997
Q ss_pred CCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCc
Q 000506 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQ 337 (1458)
Q Consensus 258 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 337 (1458)
. ||.|||. |+. ++.|-+++++++.+.+ ..|.| +.|++.+||.||+.
T Consensus 424 G-TIaeNIa---Rf~----------------------~~~d~~kIieAA~lAg-----vHelI---l~lP~GYdT~iG~~ 469 (580)
T COG4618 424 G-TIAENIA---RFG----------------------EEADPEKVIEAARLAG-----VHELI---LRLPQGYDTRIGEG 469 (580)
T ss_pred C-cHHHHHH---hcc----------------------ccCCHHHHHHHHHHcC-----hHHHH---HhCcCCccCccCCC
Confidence 7 9999994 221 2233445566665544 23433 46999999999984
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEc
Q 000506 338 MRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417 (1458)
Q Consensus 338 ~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~ 417 (1458)
..+||||||||+++||||+++|.+++||||-++||+.-...+.+.|.+... .|+|+|++.| .+.+...+|+|++|+
T Consensus 470 -G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaH--RPs~L~~~Dkilvl~ 545 (580)
T COG4618 470 -GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAH--RPSALASVDKILVLQ 545 (580)
T ss_pred -CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEec--CHHHHhhcceeeeec
Confidence 566999999999999999999999999999999999999999999999865 4555555444 457889999999999
Q ss_pred CCeEEEEcChhhHHHH
Q 000506 418 EGQIVYQGPREKVLEF 433 (1458)
Q Consensus 418 ~G~iv~~G~~~~~~~~ 433 (1458)
+|++-.+|+++|++..
T Consensus 546 ~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 546 DGRIAAFGPREEVLAK 561 (580)
T ss_pred CChHHhcCCHHHHHHH
Confidence 9999999999999874
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=319.95 Aligned_cols=214 Identities=22% Similarity=0.322 Sum_probs=174.4
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCcee------eEEE
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTE------GDIS 928 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~------G~i~ 928 (1458)
.+.++|+++++. ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+ |++.
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~--~~G~v~~~G~~~ 74 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI--YDSKIKVDGKVL 74 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CcCceeEcCEEE
Confidence 378888887763 35699999999999999999999999999999999998753 44 5555
Q ss_pred ECCeeCC---cccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000506 929 ISGYPKN---QATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----LTNAMVG 1001 (1458)
Q Consensus 929 i~g~~~~---~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg 1001 (1458)
++|.+.. ....++.++|++|++.+++.+||+||+.+...... ....++..+.++++++.+++.+ ..+..
T Consensus 75 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 150 (257)
T PRK14246 75 YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP-- 150 (257)
T ss_pred ECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC--
Confidence 5555432 12345779999999999999999999988743221 1123344567889999999964 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEE
Q 000506 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1081 (1458)
Q Consensus 1002 ~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll 1081 (1458)
+..||+|||||++|||+|+.+|++++|||||+|||..+...+.+.|+++.+ ++|||+++|++. .+.+.||++++|
T Consensus 151 ---~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l 225 (257)
T PRK14246 151 ---ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFL 225 (257)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEE
Confidence 357999999999999999999999999999999999999999999999864 699999999986 577889999999
Q ss_pred ecCcEEEEeCCC
Q 000506 1082 KRGGQVIYAGPL 1093 (1458)
Q Consensus 1082 ~~gG~~~~~G~~ 1093 (1458)
++ |+++..|+.
T Consensus 226 ~~-g~i~~~g~~ 236 (257)
T PRK14246 226 YN-GELVEWGSS 236 (257)
T ss_pred EC-CEEEEECCH
Confidence 85 789888875
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=327.89 Aligned_cols=205 Identities=20% Similarity=0.323 Sum_probs=167.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCC----c----cccceEEEecCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKE----F----VPQRTCAYISQNDL 254 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~----~~~~~~~yv~Q~d~ 254 (1458)
..+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++.
T Consensus 24 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~ 100 (289)
T PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPE 100 (289)
T ss_pred cceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcc
Confidence 35999999999999999999999999999999999999987 9999999998642 1 12457999999973
Q ss_pred --CCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc-cccc
Q 000506 255 --HFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD-ICAD 331 (1458)
Q Consensus 255 --~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~d 331 (1458)
++ ..||+||+.|.....+.. . .+ ....++.+++.+||+ +..+
T Consensus 101 ~~~~-~~tv~enl~~~~~~~~~~--~--------~~------------------------~~~~~~~ll~~~~L~~~~~~ 145 (289)
T PRK13645 101 YQLF-QETIEKDIAFGPVNLGEN--K--------QE------------------------AYKKVPELLKLVQLPEDYVK 145 (289)
T ss_pred hhhh-hhHHHHHHHHHHHHcCCC--H--------HH------------------------HHHHHHHHHHHcCCChhHhc
Confidence 34 459999998854321110 0 00 001234577889994 5677
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+ ++|+.++|+.+++.+++|
T Consensus 146 ~~~~~-----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiiiisH~~~~~~~~~d 219 (289)
T PRK13645 146 RSPFE-----LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYK-KRIIMVTHNMDQVLRIAD 219 (289)
T ss_pred CChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCC
Confidence 77766 999999999999999999999999999999999999999999999876434 456667788889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++++|++|++++.|+.+++.
T Consensus 220 ~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 220 EVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988764
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=320.19 Aligned_cols=207 Identities=23% Similarity=0.338 Sum_probs=164.5
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD--DDLKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.+
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 459999999999999999999999999999999999853 4222389999999987431 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc----ccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI----CAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~d 331 (1458)
++ +||+||+.+.....+.... + .. ...++.+++.+|+.. ..+
T Consensus 98 ~~-~tv~enl~~~~~~~~~~~~-~------------------~~--------------~~~~~~~l~~~~l~~~~~~~~~ 143 (252)
T PRK14239 98 FP-MSIYENVVYGLRLKGIKDK-Q------------------VL--------------DEAVEKSLKGASIWDEVKDRLH 143 (252)
T ss_pred Cc-CcHHHHHHHHHHHcCCCcH-H------------------HH--------------HHHHHHHHHHcCCchhHHHHHh
Confidence 87 7999999886432211000 0 00 011234567777642 334
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
..+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|+.++|+.+++.+++|
T Consensus 144 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d 215 (252)
T PRK14239 144 DSALG-----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISD 215 (252)
T ss_pred cCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCC
Confidence 44544 999999999999999999999999999999999999999999999854 4 456667788889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
+|++|++|++++.|+.+++.
T Consensus 216 ~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 216 RTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988864
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=362.37 Aligned_cols=212 Identities=24% Similarity=0.364 Sum_probs=178.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|++|.++. +.+.+|+|+|++|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 341 ~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 407 (582)
T PRK11176 341 DIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHDL 407 (582)
T ss_pred eEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEEh
Confidence 6999999998842 12469999999999999999999999999999999999987 4789999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-------LTNAMVGLPG 1004 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 1004 (1458)
++ ..+++.++||||++.+++ -|++||+.++. +.+.+ ++.++++++..++.+ -.|+.+|..+
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g 478 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGENG 478 (582)
T ss_pred hhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCCC
Confidence 53 456788999999999886 69999998742 11122 234666777776543 3577787544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
..||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ..+.||+|++|++
T Consensus 479 -~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~- 553 (582)
T PRK11176 479 -VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED- 553 (582)
T ss_pred -CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC-
Confidence 5799999999999999999999999999999999999999999999874 4799999999985 6678999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|+++..|+.
T Consensus 554 g~i~e~g~~ 562 (582)
T PRK11176 554 GEIVERGTH 562 (582)
T ss_pred CEEEEeCCH
Confidence 799999984
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=320.83 Aligned_cols=207 Identities=23% Similarity=0.340 Sum_probs=168.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCee-----cCCccc-------cceEEEec
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHE-----FKEFVP-------QRTCAYIS 250 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~-----~~~~~~-------~~~~~yv~ 250 (1458)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|++ +..... ++.++|++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 46999999999999999999999999999999999999987 9999999987 554321 34699999
Q ss_pred CCCC--CCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc
Q 000506 251 QNDL--HFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI 328 (1458)
Q Consensus 251 Q~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~ 328 (1458)
|++. +++.+|+.||+.+.....+... . ++ ....++.+++.+|+.+
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~~~-~------------------~~--------------~~~~~~~~l~~~~l~~ 142 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGARH-Y------------------GD--------------IRATAGDWLERVEIDA 142 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhccCc-H------------------HH--------------HHHHHHHHHHHcCCCh
Confidence 9973 6777899999976422110000 0 00 0112345788899974
Q ss_pred -cccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHH
Q 000506 329 -CADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAY 407 (1458)
Q Consensus 329 -~~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~ 407 (1458)
..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++.+.. +.+|+.++|+.+++.
T Consensus 143 ~~~~~~~~~-----LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~isH~~~~~~ 216 (258)
T PRK11701 143 ARIDDLPTT-----FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL-GLAVVIVTHDLAVAR 216 (258)
T ss_pred hHHhCCCcc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHH
Confidence 56777766 99999999999999999999999999999999999999999999987643 456667788889999
Q ss_pred hccCEEEEEcCCeEEEEcChhhHH
Q 000506 408 DLFDNIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 408 ~~~D~v~lL~~G~iv~~G~~~~~~ 431 (1458)
+.+|+|++|++|++++.|+++++.
T Consensus 217 ~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 217 LLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999988763
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=322.56 Aligned_cols=209 Identities=26% Similarity=0.363 Sum_probs=165.1
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++. .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhh
Confidence 46777776631 11358999999999999999999999999999999999976 478999999987532
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHH-----HHHHHHHHHHc--CCCccccccccCCCCC
Q 000506 937 ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTR-----KMFVDEVMDLV--ELEPLTNAMVGLPGVD 1006 (1458)
Q Consensus 937 ---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~-----~~~v~~~l~~l--~L~~~~~~~vg~~~~~ 1006 (1458)
...++.++|++|++.+++ .||+||+.+.... ...... ...+++.++.+ ++.+..+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GV 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CC
Confidence 234567999999988776 6999999875321 111111 11234455554 455444433 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++. +|+|||+++|++. ++ +.||++++|++ |+
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~ 213 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLED-GK 213 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEecC-Ce
Confidence 799999999999999999999999999999999999999999999986 4899999999986 45 45999999986 68
Q ss_pred EEEeCCC
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~~~G~~ 1093 (1458)
+++.|+.
T Consensus 214 i~~~~~~ 220 (234)
T cd03251 214 IVERGTH 220 (234)
T ss_pred EeeeCCH
Confidence 8888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=323.05 Aligned_cols=210 Identities=27% Similarity=0.403 Sum_probs=162.5
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.+.. .+++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~~----------~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPS----------RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCC----------CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhh
Confidence 46777766531 012458999999999999999999999999999999999876 478999999987532
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCCCCC
Q 000506 937 ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTN-------AMVGLPGVD 1006 (1458)
Q Consensus 937 ---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-------~~vg~~~~~ 1006 (1458)
...++.++|++|++.+++ .||+|++.+....+ ..+ ..++.++..++.+..+ +... ..+.
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLVG-ERGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceeec-cCCc
Confidence 233467999999988776 69999998743211 111 1223333333322211 1111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|++. ++ +.||++++|++ |+
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~ 214 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQ 214 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CE
Confidence 899999999999999999999999999999999999999999999987 7999999999986 34 48999999986 78
Q ss_pred EEEeCCC
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~~~G~~ 1093 (1458)
+++.|+.
T Consensus 215 i~~~~~~ 221 (238)
T cd03249 215 VVEQGTH 221 (238)
T ss_pred EEEeCCH
Confidence 9888874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=321.26 Aligned_cols=207 Identities=21% Similarity=0.301 Sum_probs=165.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD--DDLKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
.++|+|+|++|++||+++|+||||||||||+++|+|.++ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 26 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 105 (260)
T PRK10744 26 FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTP 105 (260)
T ss_pred eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCcc
Confidence 359999999999999999999999999999999999986 2112389999999987421 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc----cccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD----ICAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 331 (1458)
++ .||+||+.+......... .. + ....++.+++.+||. +..+
T Consensus 106 ~~-~tv~~nl~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 151 (260)
T PRK10744 106 FP-MSIYDNIAFGVRLFEKLS---------RA----------E--------------MDERVEWALTKAALWNEVKDKLH 151 (260)
T ss_pred Cc-CcHHHHHhhhHhhcCCCC---------HH----------H--------------HHHHHHHHHHHcCCChhhHHHHh
Confidence 87 799999987643211000 00 0 001234567788874 3345
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
..+++ ||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.+++|
T Consensus 152 ~~~~~-----LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiii~sH~~~~~~~~~d 223 (260)
T PRK10744 152 QSGYS-----LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--D-YTVVIVTHNMQQAARCSD 223 (260)
T ss_pred cCCCC-----CCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHhCC
Confidence 55544 999999999999999999999999999999999999999999999853 4 456667788888999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++++|++|+++..|+.+++.
T Consensus 224 ~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 224 YTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=364.06 Aligned_cols=205 Identities=25% Similarity=0.398 Sum_probs=166.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 259 (1458)
+++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||+++++... ++.++||+|++.+|+.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG- 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-
Confidence 46999999999999999999999999999999999999998 9999999999987653 5789999999999976
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
|++|||.++.. . +++++...++.+.+. + .+ -.|++..||.+|+. .
T Consensus 542 TI~eNi~~~~~---~--------------------~~e~i~~al~~a~l~--------~-~i--~~lp~G~dt~ige~-G 586 (686)
T TIGR03797 542 SIFENIAGGAP---L--------------------TLDEAWEAARMAGLA--------E-DI--RAMPMGMHTVISEG-G 586 (686)
T ss_pred cHHHHHhcCCC---C--------------------CHHHHHHHHHHcCcH--------H-HH--HhccccccccccCC-C
Confidence 99999987421 0 011222222222111 1 11 13677889999874 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCC
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G 419 (1458)
..||||||||++|||||+++|++|+||||||+||+.+..++.+.|+++ ++|+|++. |.. +..+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiIt-Hr~-~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIA-HRL-STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEe-cCh-HHHHcCCEEEEEECC
Confidence 669999999999999999999999999999999999999999999875 34555544 444 455779999999999
Q ss_pred eEEEEcChhhHHH
Q 000506 420 QIVYQGPREKVLE 432 (1458)
Q Consensus 420 ~iv~~G~~~~~~~ 432 (1458)
+++++|+++++.+
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=324.95 Aligned_cols=221 Identities=23% Similarity=0.305 Sum_probs=175.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCC---CceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1458)
.+.++|+++.+. .+.+|+++|++|++||+++|+|+|||||||||++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999988763 24599999999999999999999999999999999998642 14689999999
Q ss_pred eeCCc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCC---------CCC-HHHHHHHHHHHHHHcCCCccc
Q 000506 932 YPKNQ-----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSS---------DID-SKTRKMFVDEVMDLVELEPLT 996 (1458)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~---------~~~-~~~~~~~v~~~l~~l~L~~~~ 996 (1458)
.+... ...++.++|++|++.+++ .||+||+.+....+... ... .+...+.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87642 134567999999988777 59999999865322100 011 122345688899999885322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhc
Q 000506 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1076 (1458)
Q Consensus 997 ~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D 1076 (1458)
+.... ..+..||||||||++||+||+.+|+||||||||+|||+.++..+++.|+++++ +.|||+++|+++ .+.+.+|
T Consensus 191 ~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 11111 12458999999999999999999999999999999999999999999999976 489999999986 5778899
Q ss_pred eEE-EEecCcEEEEeCCC
Q 000506 1077 ELL-LMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1077 ~vl-ll~~gG~~~~~G~~ 1093 (1458)
+++ +|+ .|++++.|+.
T Consensus 268 ~i~~~l~-~G~i~~~g~~ 284 (305)
T PRK14264 268 QTAVFLT-GGELVEYDDT 284 (305)
T ss_pred EEEEEec-CCEEEEeCCH
Confidence 975 566 4799999885
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=320.34 Aligned_cols=211 Identities=26% Similarity=0.403 Sum_probs=166.5
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 4678888877631 2358999999999999999999999999999999999876 4789999999875
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccc-c-----CCCC
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV-G-----LPGV 1005 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v-g-----~~~~ 1005 (1458)
.. ..+++.++|++|++.+++. ||+|++.+... ... ...+++.++.+++.+..+... | ...+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NAT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 32 2345679999999887775 99999976421 111 122344455555543332211 0 1124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1006 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||++. ++ +.+|++++|++ |
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-G 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-C
Confidence 6899999999999999999999999999999999999999999999986 5899999999986 34 56999999985 7
Q ss_pred EEEEeCCC
Q 000506 1086 QVIYAGPL 1093 (1458)
Q Consensus 1086 ~~~~~G~~ 1093 (1458)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 88888764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=318.61 Aligned_cols=207 Identities=22% Similarity=0.255 Sum_probs=167.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcccEEEECCeecCCccc-cceEEEecCCCC--CCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDL-KLTGKIKYCGHEFKEFVP-QRTCAYISQNDL--HFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~-~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~ 258 (1458)
+++|+|+|+++++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|++++.... ++.++||+|++. +.+.
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 358999999999999999999999999999999999998810 029999999998764322 356999999974 4466
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc---ccccccc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI---CADTMVG 335 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~---~~dt~vg 335 (1458)
+|+.+++.+.++..+.. . ....+..+++.+||.+ ..++.++
T Consensus 96 ~~~~~~~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~~~l~~~~~~~~~~~~ 139 (254)
T PRK10418 96 HTMHTHARETCLALGKP--A----------------------------------DDATLTAALEAVGLENAARVLKLYPF 139 (254)
T ss_pred ccHHHHHHHHHHHcCCC--h----------------------------------HHHHHHHHHHHcCCCChhhhhhcCCc
Confidence 79999886643321110 0 0012345788899976 3566665
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEE
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~l 415 (1458)
+ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|++++
T Consensus 140 ~-----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~til~~sH~~~~~~~~~d~v~~ 213 (254)
T PRK10418 140 E-----MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR-ALGMLLVTHDMGVVARLADDVAV 213 (254)
T ss_pred c-----cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhCCEEEE
Confidence 5 99999999999999999999999999999999999999999999987643 35666677888889999999999
Q ss_pred EcCCeEEEEcChhhHH
Q 000506 416 LSEGQIVYQGPREKVL 431 (1458)
Q Consensus 416 L~~G~iv~~G~~~~~~ 431 (1458)
|++|++++.|+.+++.
T Consensus 214 l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 214 MSHGRIVEQGDVETLF 229 (254)
T ss_pred EECCEEEEecCHHHHh
Confidence 9999999999988764
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=332.54 Aligned_cols=229 Identities=26% Similarity=0.406 Sum_probs=197.0
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
-++.+|++.++. ..++|+|||+++++||++||+|.||||||||+|+|+|..+ +++|+|.+||++.
T Consensus 8 ll~~~~i~K~Fg-------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSFG-------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEcC-------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEc
Confidence 467888877663 4679999999999999999999999999999999999887 5899999999986
Q ss_pred Ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000506 935 NQA----TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLS 1009 (1458)
Q Consensus 935 ~~~----~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1009 (1458)
... ....-|+.|.|+..+.|++||.||+.++...+.+ .-++.+.-.+.+.++|+.+++....++.++ .||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCC
Confidence 432 2345699999999999999999999887655432 335666777789999999999644777765 799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEE
Q 000506 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1089 (1458)
Q Consensus 1010 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~ 1089 (1458)
+||||.|.|||||..+++||+||||||.|+......+.+.++++.++|.+||++||.+. |+++.|||+.||.+ |+++.
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEee
Confidence 99999999999999999999999999999999999999999999999999999999987 89999999999986 78888
Q ss_pred eCCC-Cc-chHHHHHHHH
Q 000506 1090 AGPL-GR-QSQKLVEYFE 1105 (1458)
Q Consensus 1090 ~G~~-~~-~~~~~~~~f~ 1105 (1458)
.++. .+ +.+++++..-
T Consensus 226 ~~~~~~~~~~~~lv~~Mv 243 (500)
T COG1129 226 TRPTAAETSEDELVRLMV 243 (500)
T ss_pred ecccccCCCHHHHHHHhh
Confidence 8883 43 4466766654
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=318.17 Aligned_cols=219 Identities=26% Similarity=0.317 Sum_probs=171.5
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56788887763 24599999999999999999999999999999999998421147899999998753
Q ss_pred cc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHh-hhc--C-CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000506 936 QA---T-FARVSGYCEQNDIHSPHVTVYESLLFSAW-LRL--S-SDIDSKTRKMFVDEVMDLVELE-PLTNAMVGLPGVD 1006 (1458)
Q Consensus 936 ~~---~-~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~-lr~--~-~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 1006 (1458)
.. . .++.++|++|++.+++.+|+.+++.+... ++. . .........+++++.++.+++. +..+..+. +
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----C
Confidence 21 1 23469999999988888887776543211 110 0 0111223345678899999985 34444331 3
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-hceEEEEecCc
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLMKRGG 1085 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~-~D~vlll~~gG 1085 (1458)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|++. .+... +|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999999877899999999976 35444 799999975 7
Q ss_pred EEEEeCCC
Q 000506 1086 QVIYAGPL 1093 (1458)
Q Consensus 1086 ~~~~~G~~ 1093 (1458)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 89999875
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=309.96 Aligned_cols=194 Identities=24% Similarity=0.298 Sum_probs=162.0
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEccc
Confidence 4567776652 2469999999999999999999999999999999999876 478999999987532
Q ss_pred --ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000506 937 --ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014 (1458)
Q Consensus 937 --~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1014 (1458)
..+++.++|++|++.+++.+||.|++.+....+. . + ++.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHH
Confidence 2345679999999888888999999987643321 1 1 235788999999988777665 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEE
Q 000506 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1080 (1458)
Q Consensus 1015 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vll 1080 (1458)
|++||++|+.+|++|+|||||+|||+.+...+++.|++++++|.|||+++|++. ++ .+++++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~--~~~~~~~ 197 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL-GL--VEARELR 197 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc-cc--cceEEee
Confidence 999999999999999999999999999999999999999878999999999975 23 3466653
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=319.47 Aligned_cols=208 Identities=21% Similarity=0.308 Sum_probs=165.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEECCeecCCcc-----ccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD--DDLKLTGKIKYCGHEFKEFV-----PQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 255 (1458)
+++|+|+|++|++||+++|+||||||||||+++|+|..+ |....+|+|.++|+++.... .++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999976 21123899999999875321 24579999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccc----cc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDIC----AD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~----~d 331 (1458)
++. ||+||+.+.....+.....+ + ....++.+++.+||.+. .+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~~~------------------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 144 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKNKK------------------K--------------LDEIVEKSLTSVGLWEELGDRLK 144 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCCHH------------------H--------------HHHHHHHHHHHcCCCchhhhHhh
Confidence 876 99999987643221100000 0 00123457888888652 33
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
..++ .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|+.++|+.+++.+++|
T Consensus 145 ~~~~-----~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiiisH~~~~~~~~~d 216 (251)
T PRK14244 145 DSAF-----ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK--N-FTIIVVTHSMKQAKKVSD 216 (251)
T ss_pred cChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHhhcC
Confidence 4444 4999999999999999999999999999999999999999999999853 4 456667778889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
+|++|++|++++.|+++++.
T Consensus 217 ~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 217 RVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999987763
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=304.68 Aligned_cols=170 Identities=30% Similarity=0.447 Sum_probs=150.2
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 4677776653 2469999999999999999999999999999999999876 478999999987542
Q ss_pred -----ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000506 937 -----ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE 1011 (1458)
Q Consensus 937 -----~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1011 (1458)
...++.++|++|++..++..|++|++.+. ||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 23457899999999888889999988642 8999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1012 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
||||++||++|+.+|++++|||||+|||+.++..+++.|++++++ |+|+|+++|++. ++.+.+|++++|++|
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 999999999999999999999999999999999999999999887 899999999986 566789999999864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=361.33 Aligned_cols=209 Identities=24% Similarity=0.382 Sum_probs=178.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|++|.++. ++.+|+|+|++++|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 340 ~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i 405 (592)
T PRK10790 340 RIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPL 405 (592)
T ss_pred eEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEh
Confidence 5899999998841 2359999999999999999999999999999999999987 4789999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL-------TNAMVGLPG 1004 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 1004 (1458)
++ ..+++.++||+|++.+++. |++||+.++. +.+ ++.++++++.+|+.+. .|+.+|..
T Consensus 406 ~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~- 473 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ- 473 (592)
T ss_pred hhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC-
Confidence 53 4577899999999999875 9999998852 122 2346778888887643 46667653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
...||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|+++|+++ ....||++++|++
T Consensus 474 g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~- 549 (592)
T PRK10790 474 GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHR- 549 (592)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEEC-
Confidence 357999999999999999999999999999999999999999999999854 699999999984 5667999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|+++..|+.
T Consensus 550 G~i~~~G~~ 558 (592)
T PRK10790 550 GQAVEQGTH 558 (592)
T ss_pred CEEEEEcCH
Confidence 899999985
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=317.90 Aligned_cols=207 Identities=24% Similarity=0.360 Sum_probs=164.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDD--DLKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~--~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
+++|+|+|++|++||+++|+|||||||||||++|+|..++ ....+|+|.++|+++... ..++.++|++|++.+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14240 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNP 95 (250)
T ss_pred ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCcc
Confidence 4599999999999999999999999999999999998753 112389999999987531 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc----cccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD----ICAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 331 (1458)
++ +||+||+.+.....+.... .+. ...++.+++.+++. +..+
T Consensus 96 ~~-~t~~~ni~~~~~~~~~~~~-------------------~~~--------------~~~~~~~l~~~~l~~~l~~~~~ 141 (250)
T PRK14240 96 FP-MSIYDNVAYGPRTHGIKDK-------------------KKL--------------DEIVEKSLKGAALWDEVKDRLK 141 (250)
T ss_pred Cc-ccHHHHHHHHHHhcCCCCH-------------------HHH--------------HHHHHHHHHHcCCchhhHHHHh
Confidence 87 8999999886443221000 000 01123356666653 2345
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +. +++.++|+.+++.+++|
T Consensus 142 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~-tiii~sH~~~~~~~~~d 213 (250)
T PRK14240 142 KSALG-----LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DY-TIVIVTHNMQQASRISD 213 (250)
T ss_pred cCCCC-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CC-eEEEEEeCHHHHHhhCC
Confidence 55554 999999999999999999999999999999999999999999999853 44 55667777888999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++++|++|+++..|+.+++.
T Consensus 214 ~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 214 KTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=317.56 Aligned_cols=207 Identities=25% Similarity=0.392 Sum_probs=164.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDD--DLKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~--~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
.++|+|+|+++++||+++|+|||||||||||++|+|.+++ ....+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 4699999999999999999999999999999999999874 111389999999987532 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc----ccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI----CAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~d 331 (1458)
++ .||+||+.+.....+.... + +. ...++..++.+|+.. ..+
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~~-~------------------~~--------------~~~~~~~l~~~~l~~~~~~~~~ 141 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKSK-H------------------KL--------------DRIVEESLKKAALWDEVKSELN 141 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH-H------------------HH--------------HHHHHHHHHHcCCCchhHHHHh
Confidence 87 8999999886432211000 0 00 011234567777753 244
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
..++ .||||||||++||+||+.+|++++|||||+|||..++..+.+.|+++++ + ++++.++|+.+++.+++|
T Consensus 142 ~~~~-----~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tili~sH~~~~~~~~~d 213 (250)
T PRK14262 142 KPGT-----RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--N-YTIVIVTHNIGQAIRIAD 213 (250)
T ss_pred CChh-----hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--C-cEEEEEeCCHHHHHHhCC
Confidence 4444 4999999999999999999999999999999999999999999999864 4 456667777888999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++++|++|+++..|+++++.
T Consensus 214 ~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 214 YIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred EEEEEECCEEEEecCHHHHH
Confidence 99999999999999988764
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=319.31 Aligned_cols=207 Identities=22% Similarity=0.302 Sum_probs=165.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD--LKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|+++|. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 45999999999999999999999999999999999998641 12389999999987532 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc----ccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI----CAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~d 331 (1458)
++ .||+||+.++.+..+... +. + ....+..+++.+||.+ ..+
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKD---------KK----------V--------------LDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCC---------HH----------H--------------HHHHHHHHHHHcCCCchhhhhhc
Confidence 87 599999988643211100 00 0 0112344677888753 334
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
..++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++++.++|+.+++.+++|
T Consensus 159 ~~~~-----~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d 230 (267)
T PRK14237 159 KSAL-----TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--N-YTIIIVTHNMQQAARASD 230 (267)
T ss_pred CCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHHHhcC
Confidence 4444 4999999999999999999999999999999999999999999999853 4 456667777889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++++|++|++++.|+++++.
T Consensus 231 ~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 231 YTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999998863
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=351.71 Aligned_cols=212 Identities=27% Similarity=0.410 Sum_probs=177.0
Q ss_pred eEEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCee
Q 000506 854 LSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP 933 (1458)
Q Consensus 854 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1458)
..++++|++|.++. +++.+|+|+|++++|||.+||+|+||||||||+++|+|..+ +.+|+|.+||++
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEe
Confidence 36899999998842 22459999999999999999999999999999999999987 478999999998
Q ss_pred CCc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000506 934 KNQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-------LTNAMVGLP 1003 (1458)
Q Consensus 934 ~~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~ 1003 (1458)
..+ ..+++.++||+|++.+++ .|++||+.++. .+.+. +.+.++++..++.+ -.|+.+|..
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCCH----HHHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 654 456788999999988876 59999997642 12222 23556666666543 346777654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEec
Q 000506 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1083 (1458)
Q Consensus 1004 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~ 1083 (1458)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ..+.||++++|++
T Consensus 591 -g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~ 666 (694)
T TIGR01846 591 -GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK 666 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC
Confidence 45899999999999999999999999999999999999999999999984 5899999999985 4567999999985
Q ss_pred CcEEEEeCCC
Q 000506 1084 GGQVIYAGPL 1093 (1458)
Q Consensus 1084 gG~~~~~G~~ 1093 (1458)
|++++.|+.
T Consensus 667 -G~i~~~g~~ 675 (694)
T TIGR01846 667 -GQIAESGRH 675 (694)
T ss_pred -CEEEEeCCH
Confidence 799999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=317.52 Aligned_cols=208 Identities=25% Similarity=0.344 Sum_probs=165.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDL--KLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 469999999999999999999999999999999999987631 1379999999987531 124569999999999
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCC----ccccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGL----DICAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL----~~~~d 331 (1458)
++.+|++||+.++....+... .+ +. ....+..++.+++ .+..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~-~~------------------~~--------------~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRD-RD------------------HL--------------MEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCC-HH------------------HH--------------HHHHHHHHHHcCcchhhhhhhc
Confidence 999999999987543221100 00 00 0011223444444 23445
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+++ ||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++ + ++++.++|+.+++.+++|
T Consensus 144 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d 215 (252)
T PRK14272 144 TPATG-----LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--V-TTIIIVTHNMHQAARVSD 215 (252)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHhCC
Confidence 55555 999999999999999999999999999999999999999999999853 4 556667788889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
+|++|++|++++.|+++++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988864
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=312.92 Aligned_cols=210 Identities=22% Similarity=0.294 Sum_probs=167.6
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEEC--Ce-
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISIS--GY- 932 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~--g~- 932 (1458)
+.++|+++.++.... ...++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCc
Confidence 567888877742100 0012469999999999999999999999999999999999876 478999998 42
Q ss_pred -eCCc---c---cc-cceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCC
Q 000506 933 -PKNQ---A---TF-ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL-TNAMVGLP 1003 (1458)
Q Consensus 933 -~~~~---~---~~-~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~ 1003 (1458)
+... . .. ++.+||++|++.+++.+||+|++.+..... ....+...+.++++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3211 1 11 356999999999999999999998764322 12333345568889999999763 3444
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEe
Q 000506 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1004 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~ 1082 (1458)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.+|+++.+.
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 3479999999999999999999999999999999999999999999999877999999999964 4567899998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=326.43 Aligned_cols=211 Identities=22% Similarity=0.315 Sum_probs=167.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD--LKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
.++|+|+|++|++||+++|+|||||||||||++|+|+.++. ...+|+|.++|+++... ..++.++||+|++++
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 45999999999999999999999999999999999998631 01289999999998632 235679999999998
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 335 (1458)
++ .||+||+.|+....+.. .++. ....+..+++.++|.+..++.++
T Consensus 175 ~~-~ti~eNi~~~~~~~~~~----------~~~~-----------------------~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 FE-MSIFDNVAYGPRNNGIN----------DRKI-----------------------LEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred CC-CcHHHHHHhHHHhcCCC----------hHHH-----------------------HHHHHHHHHHHcCCcchhhhhhh
Confidence 85 79999999864322110 0000 00112335666666543334443
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEE
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~l 415 (1458)
. ....|||||||||+|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ + .++++++|..+++.+++|+|++
T Consensus 221 ~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~-~Tii~iTH~l~~i~~~~Driiv 296 (329)
T PRK14257 221 K-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--K-YSIIIVTHSMAQAQRISDETVF 296 (329)
T ss_pred C-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEE
Confidence 3 3445999999999999999999999999999999999999999999998864 3 4666677888899999999999
Q ss_pred EcCCeEEEEcChhhHH
Q 000506 416 LSEGQIVYQGPREKVL 431 (1458)
Q Consensus 416 L~~G~iv~~G~~~~~~ 431 (1458)
|++|++++.|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999974
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=358.92 Aligned_cols=211 Identities=28% Similarity=0.436 Sum_probs=179.3
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++. +++.+|+|+|++++|||.+||+||||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 338 ~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~i 404 (574)
T PRK11160 338 SLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQPI 404 (574)
T ss_pred eEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEh
Confidence 6899999998842 12468999999999999999999999999999999999876 4789999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc------ccccccCCCC
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL------TNAMVGLPGV 1005 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~------~~~~vg~~~~ 1005 (1458)
.+ ..+++.++||+|++.+++ .|++||+.++. + +.+ ++.++++++.+++.+. .|+.+|.. .
T Consensus 405 ~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~-g 473 (574)
T PRK11160 405 ADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEG-G 473 (574)
T ss_pred hhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCC-C
Confidence 53 456788999999998876 59999998752 1 222 3457888888888754 35667643 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCc
Q 000506 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1006 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG 1085 (1458)
..||||||||++|||||+++|++|+||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|++++|++ |
T Consensus 474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~-G 549 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN-G 549 (574)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC-C
Confidence 5799999999999999999999999999999999999999999999985 5899999999986 3467999999985 7
Q ss_pred EEEEeCCC
Q 000506 1086 QVIYAGPL 1093 (1458)
Q Consensus 1086 ~~~~~G~~ 1093 (1458)
+++..|+.
T Consensus 550 ~i~~~g~~ 557 (574)
T PRK11160 550 QIIEQGTH 557 (574)
T ss_pred eEEEeCCH
Confidence 99999874
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=317.57 Aligned_cols=198 Identities=25% Similarity=0.360 Sum_probs=167.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--
Confidence 478889988763 2459999999999999999999999999999999999876 47899999872
Q ss_pred CcccccceEEEEccCCCCCCC--CCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000506 935 NQATFARVSGYCEQNDIHSPH--VTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQ 1012 (1458)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~~~--lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1012 (1458)
+.++|++|++.+++. .|+.+++.+. .... .+.+.++++.+++.+..++.+ ..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 358999999877765 4777776431 1111 234688999999988777654 4799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceEEEEecCcEEEEeC
Q 000506 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1013 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G 1091 (1458)
|||++||++|+.+|++|+|||||+|||+.+...+++.|++++++ |+|||+++|+++ ++.+.+|++++|+ + +++..|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeC
Confidence 99999999999999999999999999999999999999999766 899999999986 5778899999995 4 578888
Q ss_pred CC
Q 000506 1092 PL 1093 (1458)
Q Consensus 1092 ~~ 1093 (1458)
+.
T Consensus 203 ~~ 204 (251)
T PRK09544 203 TP 204 (251)
T ss_pred CH
Confidence 75
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=319.59 Aligned_cols=208 Identities=25% Similarity=0.334 Sum_probs=166.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCeecCCcc----ccceEEEecCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD--LKLTGKIKYCGHEFKEFV----PQRTCAYISQNDLH 255 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~ 255 (1458)
.+++|+|+|++|++||+++|+|||||||||||++|+|+++|. ...+|+|.++|+++.+.. .++.++|++|++.+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l 112 (276)
T PRK14271 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNP 112 (276)
T ss_pred CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCcc
Confidence 356999999999999999999999999999999999998751 013899999999875431 24679999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccc----cc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDIC----AD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~----~d 331 (1458)
++ .||+||+.+......... . .+. ...+..+++.+||.+. .+
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~---------~----------~~~--------------~~~~~~~l~~~~l~~~~~~~l~ 158 (276)
T PRK14271 113 FP-MSIMDNVLAGVRAHKLVP---------R----------KEF--------------RGVAQARLTEVGLWDAVKDRLS 158 (276)
T ss_pred CC-ccHHHHHHHHHHhccCCC---------H----------HHH--------------HHHHHHHHHHcCCCchhhhHhh
Confidence 87 799999987543211000 0 000 0112346777888643 34
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.+++|
T Consensus 159 ~~~~~-----LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d 230 (276)
T PRK14271 159 DSPFR-----LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISD 230 (276)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCC
Confidence 44444 999999999999999999999999999999999999999999999864 3 466667788889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++++|++|+++..|+++++.
T Consensus 231 ri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 231 RAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999998874
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=334.95 Aligned_cols=210 Identities=27% Similarity=0.369 Sum_probs=177.1
Q ss_pred cccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCc-----cccceEEEecCCC-
Q 000506 180 KRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF-----VPQRTCAYISQND- 253 (1458)
Q Consensus 180 ~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d- 253 (1458)
.+...+++||||.+++||+++|+|+||||||||.++|+|+++|+ +|+|.++|.+.+.. ..++.+-+|+||+
T Consensus 301 ~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~ 377 (539)
T COG1123 301 RGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY 377 (539)
T ss_pred ccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCcc
Confidence 35677999999999999999999999999999999999999998 99999999872111 1235688888885
Q ss_pred -CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc-ccc
Q 000506 254 -LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI-CAD 331 (1458)
Q Consensus 254 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~d 331 (1458)
.+.|.+||++++.......+.... .+.+..++.+++..||+. ..+
T Consensus 378 ~SLnPr~tV~~~i~epL~~~~~~~~---------------------------------~~~~~rv~~ll~~VgL~~~~l~ 424 (539)
T COG1123 378 SSLNPRMTVGDILAEPLRIHGGGSG---------------------------------AERRARVAELLELVGLPPEFLD 424 (539)
T ss_pred cccCccccHHHHHHhHHhhhcccch---------------------------------HHHHHHHHHHHHHcCCCHHHHh
Confidence 589999999999876554332110 011224667899999986 466
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
.++.+ ||||||||++|||||+.+|+++++|||||.||++++.++.+.|+++.++.+ .+.+.++||...+...||
T Consensus 425 ryP~e-----lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g-~t~lfISHDl~vV~~i~d 498 (539)
T COG1123 425 RYPHE-----LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELG-LTYLFISHDLAVVRYIAD 498 (539)
T ss_pred cCchh-----cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhC-CEEEEEeCCHHHHHhhCc
Confidence 66665 999999999999999999999999999999999999999999999998765 566778999999999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
||++|++|+||+.||.+++.
T Consensus 499 rv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 499 RVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred eEEEEECCeEEEeCCHHHHh
Confidence 99999999999999998884
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=322.13 Aligned_cols=206 Identities=23% Similarity=0.318 Sum_probs=163.1
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDL--KLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
..+|+|+|++|++||+++|+|||||||||||++|+|.+++.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 459999999999999999999999999999999999986310 1289999999986421 124569999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc----cccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD----ICAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 331 (1458)
++. ||+||+.+.+...+... + . ...++.+++.+++. +..|
T Consensus 106 ~~~-tv~enl~~~~~~~~~~~------~---------------~--------------~~~~~~~l~~~~l~~~l~~~~~ 149 (269)
T PRK14259 106 FPK-SIYENIAFGARINGYTG------D---------------M--------------DELVERSLRKAAVWDECKDKLN 149 (269)
T ss_pred chh-hHHHHHhhhhhhcCCcH------H---------------H--------------HHHHHHHHHHhCCcchhhhhhC
Confidence 874 99999988654322100 0 0 00123345666653 3345
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+.+ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ + .+|+.++|+.+++.+++|
T Consensus 150 ~~~~~-----LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~~~~~~d 221 (269)
T PRK14259 150 ESGYS-----LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--N-FTIVIVTHNMQQAVRVSD 221 (269)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhcC
Confidence 55544 999999999999999999999999999999999999999999999853 4 456667788889999999
Q ss_pred EEEEEcC-----------CeEEEEcChhhHHH
Q 000506 412 NIILLSE-----------GQIVYQGPREKVLE 432 (1458)
Q Consensus 412 ~v~lL~~-----------G~iv~~G~~~~~~~ 432 (1458)
++++|++ |++++.|+++++.+
T Consensus 222 ~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 222 MTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 9999996 67899999988743
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=320.54 Aligned_cols=205 Identities=22% Similarity=0.321 Sum_probs=169.7
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc---ccceEEEecCCCC-CCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV---PQRTCAYISQNDL-HFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 258 (1458)
..+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35999999999999999999999999999999999999988 999999999875422 2457999999974 5777
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
.||.||+.+.....+.. +.+ ....++.+++.+||.+..++.+..
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP----------REE------------------------MIKRVDEALLAVNMLDFKTREPAR-- 140 (277)
T ss_pred CCHHHHHHhhHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCHhHhhCCccc--
Confidence 89999998754321110 000 001245678889998888877766
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++. .+|+|++|++
T Consensus 141 ---LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tiil~sH~~~~~~-~~d~i~~l~~ 215 (277)
T PRK13642 141 ---LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ-LTVLSITHDLDEAA-SSDRILVMKA 215 (277)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHH-hCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999876434 45555677777776 6999999999
Q ss_pred CeEEEEcChhhHH
Q 000506 419 GQIVYQGPREKVL 431 (1458)
Q Consensus 419 G~iv~~G~~~~~~ 431 (1458)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988864
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=294.62 Aligned_cols=216 Identities=25% Similarity=0.386 Sum_probs=185.4
Q ss_pred cccccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCC
Q 000506 176 LPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQN 252 (1458)
Q Consensus 176 ~~~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~ 252 (1458)
+.++.+.+.||+|+|..|++|.+|+++|||||||||||.+++.+++.+ +|+|+++|+++.+... .+.++.+-|+
T Consensus 7 v~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILkQ~ 83 (252)
T COG4604 7 VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQE 83 (252)
T ss_pred hhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHHhh
Confidence 345567788999999999999999999999999999999999999988 9999999999876543 3568889999
Q ss_pred CCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccc
Q 000506 253 DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADT 332 (1458)
Q Consensus 253 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 332 (1458)
......+||+|-+.|+---...|. . . .++...++..++-|+|++..|.
T Consensus 84 N~i~~rlTV~dLv~FGRfPYSqGR---l----t-------------------------~eD~~~I~~aieyl~L~~l~dr 131 (252)
T COG4604 84 NHINSRLTVRDLVGFGRFPYSQGR---L----T-------------------------KEDRRIINEAIEYLHLEDLSDR 131 (252)
T ss_pred chhhheeEHHHHhhcCCCcccCCC---C----c-------------------------hHHHHHHHHHHHHhcccchHHH
Confidence 888889999999999632111111 0 0 0122346778899999999988
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCE
Q 000506 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDN 412 (1458)
Q Consensus 333 ~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 412 (1458)
...+ ||||||||.-||..++.+.+.++||||.+.||-..+.++++.||+++++.++|+|+. .|+...+..++|.
T Consensus 132 yLd~-----LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviV-lHDINfAS~YsD~ 205 (252)
T COG4604 132 YLDE-----LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVV-LHDINFASCYSDH 205 (252)
T ss_pred hHHh-----cccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEE-EecccHHHhhhhh
Confidence 8766 999999999999999999999999999999999999999999999999998877765 5778899999999
Q ss_pred EEEEcCCeEEEEcChhhHHH
Q 000506 413 IILLSEGQIVYQGPREKVLE 432 (1458)
Q Consensus 413 v~lL~~G~iv~~G~~~~~~~ 432 (1458)
|+-|++|+++.+|+++++.+
T Consensus 206 IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 206 IVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeeecCCEEEecCCHHHhcC
Confidence 99999999999999999864
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=334.06 Aligned_cols=220 Identities=18% Similarity=0.281 Sum_probs=175.7
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.+.++|+++.+.. ...+.+|+|+|++|++|+++||+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~----------~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~ 88 (549)
T PRK13545 21 FDKLKDLFFRSKD----------GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA 88 (549)
T ss_pred eeEEEEEEEecCC----------CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee
Confidence 4667777665531 112469999999999999999999999999999999999876 4789999999752
Q ss_pred CcccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000506 935 NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014 (1458)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1014 (1458)
++.+...+.+.+||+|++.+..... ..+.++..+.++++++.+++.+..+..+ +.|||||||
T Consensus 89 ----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQ 150 (549)
T PRK13545 89 ----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKS 150 (549)
T ss_pred ----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHH
Confidence 1222344567789999998754332 1233444556788999999988777764 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCC
Q 000506 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1015 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~ 1094 (1458)
|++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|.+ |++++.|+..
T Consensus 151 RVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~ 228 (549)
T PRK13545 151 RLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999999999999999878999999999986 57788999999985 7899998764
Q ss_pred cchHHHHHHHHh
Q 000506 1095 RQSQKLVEYFEA 1106 (1458)
Q Consensus 1095 ~~~~~~~~~f~~ 1106 (1458)
+.......|++.
T Consensus 229 el~~~~~~~~~~ 240 (549)
T PRK13545 229 EVVDHYDEFLKK 240 (549)
T ss_pred HHHhhHHHHHHH
Confidence 322233344443
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=317.17 Aligned_cols=207 Identities=25% Similarity=0.382 Sum_probs=164.6
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD--DDLKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
+++|+|+|++|++||+++|+||||||||||+++|+|.++ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTP 96 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCcc
Confidence 459999999999999999999999999999999999986 2111389999999987431 124569999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc----cccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD----ICAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 331 (1458)
++ .||+||+.+.....+.... + . ....++.+++.+||. +..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~-----~--------------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14251 97 FP-FSVYDNVAYGLKIAGVKDK-----E--------------L--------------IDQRVEESLKQAAIWKETKDNLD 142 (251)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH-----H--------------H--------------HHHHHHHHHHHcCCCcchHHHhc
Confidence 86 7999999875432211000 0 0 001134467777874 2344
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
..+++ ||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.+++|
T Consensus 143 ~~~~~-----LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiiiisH~~~~~~~~~d 214 (251)
T PRK14251 143 RNAQA-----FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--Q-YTFIMVTHNLQQAGRISD 214 (251)
T ss_pred cChhh-----CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--C-CeEEEEECCHHHHHhhcC
Confidence 44444 999999999999999999999999999999999999999999999853 4 566667788889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
+|++|++|+++..|+.+++.
T Consensus 215 ~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 215 QTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=316.74 Aligned_cols=207 Identities=24% Similarity=0.328 Sum_probs=163.5
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCeecCC-c---cccceEEEecCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD--LKLTGKIKYCGHEFKE-F---VPQRTCAYISQNDLH 255 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~-~---~~~~~~~yv~Q~d~~ 255 (1458)
++++|+|+|+++++||+++|+||||||||||+++|+|..+|. ...+|+|.++|.++.. . ..++.++|++|++.+
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 94 (249)
T PRK14253 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94 (249)
T ss_pred CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence 356999999999999999999999999999999999998752 0138999999988742 1 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc----ccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI----CAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~d 331 (1458)
++ .||+||+.++....+.... ... ...++..++.+|+.+ ..+
T Consensus 95 ~~-~tv~~~l~~~~~~~~~~~~-------------------~~~--------------~~~~~~~~~~~~l~~~~~~~~~ 140 (249)
T PRK14253 95 FP-MSIYENVAYGLRAQGIKDK-------------------KVL--------------DEVVERSLRGAALWDEVKDRLK 140 (249)
T ss_pred Cc-ccHHHHHHhHHHhcCCCch-------------------HHH--------------HHHHHHHHHHcCCchhhhHHhh
Confidence 87 7999999876432211000 000 011233556666643 234
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ + ++|+.++|+.+++.+++|
T Consensus 141 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sh~~~~~~~~~d 212 (249)
T PRK14253 141 SHAFG-----LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--N-YTIVIVTHSMQQARRISD 212 (249)
T ss_pred cCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEecCHHHHHHhCC
Confidence 44444 999999999999999999999999999999999999999999999864 4 456666777889999999
Q ss_pred EEEEEcCCeEEEEcChhhH
Q 000506 412 NIILLSEGQIVYQGPREKV 430 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~ 430 (1458)
++++|++|+++..|+.+++
T Consensus 213 ~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 213 RTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998775
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=319.27 Aligned_cols=204 Identities=21% Similarity=0.303 Sum_probs=163.0
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCcccEEEECCeecCCc-----cccceEEEecCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD-----DDLKLTGKIKYCGHEFKEF-----VPQRTCAYISQN 252 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~-----~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~ 252 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|+.+ |+ +|+|.++|+++... ..++.++|++|+
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 110 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS---EGEILYEGLNILDSNINVVNLRREIGMVFQK 110 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC---ceEEEECCEEcccccccHHHHhccEEEEecC
Confidence 359999999999999999999999999999999999864 45 89999999987532 124579999999
Q ss_pred CCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc----c
Q 000506 253 DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD----I 328 (1458)
Q Consensus 253 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~ 328 (1458)
+.+++. ||+||+.+.....+... + . .. +..+...++.+|+. +
T Consensus 111 ~~~~~~-tv~enl~~~~~~~~~~~--~---~--------------~~--------------~~~~~~~l~~~~l~~~~~~ 156 (268)
T PRK14248 111 PNPFPK-SIYNNITHALKYAGERR--K---S--------------VL--------------DEIVEESLTKAALWDEVKD 156 (268)
T ss_pred CccCcc-cHHHHHHHHHHhcCCCc--H---H--------------HH--------------HHHHHHHHHHcCCCcchHH
Confidence 988875 99999987543211000 0 0 00 01123356666764 2
Q ss_pred cccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHh
Q 000506 329 CADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYD 408 (1458)
Q Consensus 329 ~~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~ 408 (1458)
..++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ + ++|+.++|+.+++.+
T Consensus 157 ~~~~~~~~-----LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~ 228 (268)
T PRK14248 157 RLHSSALS-----LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--E-YSIIIVTHNMQQALR 228 (268)
T ss_pred HHhcCccc-----CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEEeCHHHHHH
Confidence 34555555 999999999999999999999999999999999999999999999854 4 456667777888999
Q ss_pred ccCEEEEEcCCeEEEEcChhhHH
Q 000506 409 LFDNIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 409 ~~D~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++|+|++|++|++++.|+.+++.
T Consensus 229 ~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 229 VSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999988764
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=312.57 Aligned_cols=194 Identities=25% Similarity=0.358 Sum_probs=161.1
Q ss_pred eEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcccccceEEEEccCCCCC--CCCCHHHHHHHHH
Q 000506 889 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHS--PHVTVYESLLFSA 966 (1458)
Q Consensus 889 ~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~lTV~e~l~f~~ 966 (1458)
+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.. ..++.++|++|++.++ ..+||.|++.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4688999999999999999999999999876 47899999998753 2356799999998764 3489999998753
Q ss_pred hhhcC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 000506 967 WLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045 (1458)
Q Consensus 967 ~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~ 1045 (1458)
..... .....+..++.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 00112233456889999999988777665 3799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcEEEEeCCCC
Q 000506 1046 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLG 1094 (1458)
Q Consensus 1046 i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~~ 1094 (1458)
+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |++++.|+..
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~ 197 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQ 197 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHH
Confidence 99999999877999999999986 577889999999 5 7899998864
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=350.58 Aligned_cols=214 Identities=23% Similarity=0.300 Sum_probs=175.9
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECC-----
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG----- 931 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g----- 931 (1458)
+++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|.....+.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~ 68 (520)
T TIGR03269 2 EVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK 68 (520)
T ss_pred EEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccc
Confidence 5678877662 2469999999999999999999999999999999999852014789999972
Q ss_pred ------------------eeCC----------c---ccccceEEEEccC-CCCCCCCCHHHHHHHHHhhhcCCCCCHHHH
Q 000506 932 ------------------YPKN----------Q---ATFARVSGYCEQN-DIHSPHVTVYESLLFSAWLRLSSDIDSKTR 979 (1458)
Q Consensus 932 ------------------~~~~----------~---~~~~~~~gyv~Q~-~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~ 979 (1458)
.+.. . ...++.+||++|+ +.+++.+||+|++.+..... ..+.++.
T Consensus 69 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~ 145 (520)
T TIGR03269 69 CGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEA 145 (520)
T ss_pred ccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence 1110 0 1234579999997 67888899999998865432 1233445
Q ss_pred HHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 000506 980 KMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1058 (1458)
Q Consensus 980 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~ 1058 (1458)
+++++++++.+||.+..+..+ ..|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+
T Consensus 146 ~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 146 VGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 567899999999988777664 479999999999999999999999999999999999999999999999654 89
Q ss_pred EEEEEecCccHHHHHhhceEEEEecCcEEEEeCCC
Q 000506 1059 TVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1059 tvi~t~Hq~s~~i~~~~D~vlll~~gG~~~~~G~~ 1093 (1458)
|||+++|++. .+.+.||++++|++ |++++.|+.
T Consensus 221 tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 253 (520)
T TIGR03269 221 SMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTP 253 (520)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCH
Confidence 9999999986 46788999999986 788888875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=366.52 Aligned_cols=211 Identities=27% Similarity=0.455 Sum_probs=178.6
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|++|+++. +++++|+|+|++|+|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 463 ~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l 529 (694)
T TIGR03375 463 EIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDI 529 (694)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEh
Confidence 6899999999842 13469999999999999999999999999999999999987 4789999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-------LTNAMVGLPG 1004 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 1004 (1458)
.+ ..+++.++||+|++.+++ .|++||+.++. .+.+. +.+.++++..++.+ -.|+.+|..+
T Consensus 530 ~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G 599 (694)
T TIGR03375 530 RQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYADD----EEILRAAELAGVTEFVRRHPDGLDMQIGERG 599 (694)
T ss_pred hhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCCH----HHHHHHHHHcChHHHHHhCcccccceecCCC
Confidence 53 457889999999999886 59999998742 12222 33566677666644 3467777544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ..+.+|++++|++
T Consensus 600 -~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~- 674 (694)
T TIGR03375 600 -RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN- 674 (694)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC-
Confidence 5799999999999999999999999999999999999999999999985 4799999999985 5678999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|++++.|+.
T Consensus 675 G~i~e~G~~ 683 (694)
T TIGR03375 675 GRIVADGPK 683 (694)
T ss_pred CEEEeeCCH
Confidence 799999984
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=280.12 Aligned_cols=202 Identities=25% Similarity=0.357 Sum_probs=172.7
Q ss_pred cccccceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc-------cceEEEec
Q 000506 178 SKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-------QRTCAYIS 250 (1458)
Q Consensus 178 ~~~~~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~ 250 (1458)
....+..||++|++.|++||-++|+|||||||||||-+|+|+..|+ +|+|.+.|+++..+.. .+.+|+|+
T Consensus 18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVF 94 (228)
T COG4181 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVF 94 (228)
T ss_pred CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEE
Confidence 4456788999999999999999999999999999999999999998 9999999999876532 36799999
Q ss_pred CCCCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccc
Q 000506 251 QNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICA 330 (1458)
Q Consensus 251 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 330 (1458)
|...++|+||..||+...+.++|-+.+.. .......|+.+||.+..
T Consensus 95 QSF~Lip~ltAlENV~lPleL~ge~~~~~----------------------------------~~~A~~lL~~vGLg~Rl 140 (228)
T COG4181 95 QSFHLIPNLTALENVALPLELRGESSADS----------------------------------RAGAKALLEAVGLGKRL 140 (228)
T ss_pred EeeeccccchhhhhccchhhhcCCccccH----------------------------------HHHHHHHHHHhCccccc
Confidence 99999999999999998777665321100 01123478899999988
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhcc
Q 000506 331 DTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLF 410 (1458)
Q Consensus 331 dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~ 410 (1458)
+..++. |||||+|||+||||+...|+|||-||||-+||..|..+|.+.|-.+.++. +++++.++|+ +....-|
T Consensus 141 ~HyP~q-----LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~-G~TlVlVTHD-~~LA~Rc 213 (228)
T COG4181 141 THYPAQ-----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRER-GTTLVLVTHD-PQLAARC 213 (228)
T ss_pred ccCccc-----cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhc-CceEEEEeCC-HHHHHhh
Confidence 877777 99999999999999999999999999999999999999999999998865 4666667776 4567789
Q ss_pred CEEEEEcCCeEEE
Q 000506 411 DNIILLSEGQIVY 423 (1458)
Q Consensus 411 D~v~lL~~G~iv~ 423 (1458)
||++-|.+|+++.
T Consensus 214 ~R~~r~~~G~l~~ 226 (228)
T COG4181 214 DRQLRLRSGRLVE 226 (228)
T ss_pred hheeeeecceecc
Confidence 9999999999874
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=314.99 Aligned_cols=207 Identities=24% Similarity=0.300 Sum_probs=164.2
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDL--KLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+. ..+|+|.++|.++... ..++.++||+|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence 459999999999999999999999999999999999998741 1259999999987532 124679999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc----ccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI----CAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~d 331 (1458)
++. ||+||+.+.....+.... + +. ....+.+++.+||.+ ..+
T Consensus 97 ~~~-tv~enl~~~~~~~~~~~~-~------------------~~--------------~~~~~~~l~~~~l~~~l~~~~~ 142 (251)
T PRK14249 97 FPK-SIFDNVAFGPRMLGTTAQ-S------------------RL--------------DEVVEKSLRQAALWDEVKDNLH 142 (251)
T ss_pred CcC-cHHHHHhhHHHhcCCChh-h------------------HH--------------HHHHHHHHHHhCCchhhhhHhh
Confidence 875 999999886543221100 0 00 001233455566542 234
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. . + .+|+.++|+.+++.+++|
T Consensus 143 ~~~~~-----LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~-~tilivsh~~~~~~~~~d 214 (251)
T PRK14249 143 KSGLA-----LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-N-YTIAIVTHNMQQAARASD 214 (251)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-C-CEEEEEeCCHHHHHhhCC
Confidence 44444 99999999999999999999999999999999999999999999984 2 4 466667788899999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++++|++|++++.|+++++.
T Consensus 215 ~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 215 WTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred EEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=319.46 Aligned_cols=214 Identities=27% Similarity=0.369 Sum_probs=170.3
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-----CCcccEEEECCeecCCccc---cceEEEecCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD-----LKLTGKIKYCGHEFKEFVP---QRTCAYISQND 253 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~-----~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d 253 (1458)
++.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|+++..... ++.++|++|++
T Consensus 13 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 346999999999999999999999999999999999999874 1137999999998764322 34689999998
Q ss_pred CCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCccccccc
Q 000506 254 LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTM 333 (1458)
Q Consensus 254 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 333 (1458)
..++.+||+||+.+....... ... ... .+ ....++.+++.+||++..++.
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~--~~~---~~~-----------~~--------------~~~~~~~~l~~~~l~~~~~~~ 142 (272)
T PRK13547 93 QPAFAFSAREIVLLGRYPHAR--RAG---ALT-----------HR--------------DGEIAWQALALAGATALVGRD 142 (272)
T ss_pred CCCCCCcHHHHHhhccccccc--ccc---cCC-----------HH--------------HHHHHHHHHHHcCcHhhhcCC
Confidence 766678999999875321000 000 000 00 011235578899998877777
Q ss_pred ccCccCCCCChHHHHHHHHHHHHh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChh
Q 000506 334 VGDQMRRGVSGGQKKRVTTGEMLV---------GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAP 404 (1458)
Q Consensus 334 vg~~~~rGLSGGqkkRvsia~aL~---------~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~ 404 (1458)
+++ |||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++.+..+ ++++.++|+.+
T Consensus 143 ~~~-----LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tviiisH~~~ 216 (272)
T PRK13547 143 VTT-----LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPN 216 (272)
T ss_pred ccc-----CCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHH
Confidence 766 9999999999999999 59999999999999999999999999999876434 45666777788
Q ss_pred HHHhccCEEEEEcCCeEEEEcChhhHH
Q 000506 405 EAYDLFDNIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 405 ~~~~~~D~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++.+++|++++|++|++++.|+.+++.
T Consensus 217 ~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 217 LAARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHHhCCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999999999987763
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=353.93 Aligned_cols=209 Identities=30% Similarity=0.486 Sum_probs=171.0
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCCCCCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHFGE 258 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 258 (1458)
++++|+|+|++++|||.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+|.
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~- 416 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS- 416 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-
Confidence 456999999999999999999999999999999999999998 9999999999987654 678999999999997
Q ss_pred CCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCcc
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 338 (1458)
-||+|||.++..- . .++++ .+++.... ..|.+. .|++..||.||+ .
T Consensus 417 ~TI~~NI~~g~~~------------a----------t~eei---~~a~k~a~-----~~d~I~---~lp~g~dt~vge-~ 462 (567)
T COG1132 417 GTIRENIALGRPD------------A----------TDEEI---EEALKLAN-----AHEFIA---NLPDGYDTIVGE-R 462 (567)
T ss_pred ccHHHHHhcCCCC------------C----------CHHHH---HHHHHHhC-----hHHHHH---hCcccccceecC-C
Confidence 5999999986320 0 01122 22222211 112222 357789999995 4
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcC
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~ 418 (1458)
...||||||||++||||++.+|++|+||||||+||+.+...|.+.++++.+ ++|+++ +.|....+.+ +|+|++|++
T Consensus 463 G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~ii-IaHRlsti~~-aD~IiVl~~ 538 (567)
T COG1132 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLI-IAHRLSTIKN-ADRIIVLDN 538 (567)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEE-EeccHhHHHh-CCEEEEEEC
Confidence 455999999999999999999999999999999999999999999997764 467777 5555555555 999999999
Q ss_pred CeEEEEcChhhHHH
Q 000506 419 GQIVYQGPREKVLE 432 (1458)
Q Consensus 419 G~iv~~G~~~~~~~ 432 (1458)
|++++.|+++++..
T Consensus 539 G~i~e~G~h~eLl~ 552 (567)
T COG1132 539 GRIVERGTHEELLA 552 (567)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999875
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=307.46 Aligned_cols=194 Identities=23% Similarity=0.319 Sum_probs=163.5
Q ss_pred EEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCC
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1458)
+.++|+++.+. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|++..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccc
Confidence 56788887663 2469999999999999999999999999999999999876 47899999998764
Q ss_pred c--ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000506 936 Q--ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQR 1013 (1458)
Q Consensus 936 ~--~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1013 (1458)
. ..+++.++|++|+..+++..||+|++.+.... .. . ...++++++.+++.+..+..+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~~----~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--SP----G--AVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--Cc----c--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 2 34567899999998888899999999886421 11 1 235789999999987666654 37999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEE
Q 000506 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1079 (1458)
Q Consensus 1014 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vl 1079 (1458)
||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ..+.+|...
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999999999999998777999999999975 445566543
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=302.66 Aligned_cols=160 Identities=27% Similarity=0.477 Sum_probs=143.2
Q ss_pred ecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCcc----cccceEEEEccCC---CCCCC
Q 000506 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQA----TFARVSGYCEQND---IHSPH 955 (1458)
Q Consensus 883 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~ 955 (1458)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|+. .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 7999999999999999999999999999999999876 4789999999876432 2456799999984 57788
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000506 956 VTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035 (1458)
Q Consensus 956 lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPT 1035 (1458)
+|++||+.+... ||||||||++||+||+.+|++|+|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999976421 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1036 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1036 sgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~-G~ 181 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYE-GR 181 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecC-Cc
Confidence 999999999999999999877999999999986 67788999999986 44
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=321.16 Aligned_cols=204 Identities=22% Similarity=0.356 Sum_probs=163.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--C---CCCcccEEEECCeecCCc-----cccceEEEecCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD--D---DLKLTGKIKYCGHEFKEF-----VPQRTCAYISQN 252 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~--~---~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~ 252 (1458)
.++|+|+|++|++||+++|+|||||||||||++|+|+.+ | + +|+|.++|.++... ..++.++|++|+
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~ 128 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT---TGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC---ceEEEECCEEhhhcccchHHhhhcEEEECCC
Confidence 359999999999999999999999999999999999854 3 5 99999999987532 124579999999
Q ss_pred CCCCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc----c
Q 000506 253 DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD----I 328 (1458)
Q Consensus 253 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~ 328 (1458)
+.+++. ||+||+.+..+..+.... + +. ....+.+++.+|+. +
T Consensus 129 ~~l~~~-tv~enl~~~~~~~~~~~~-~------------------~~--------------~~~~~~~l~~~~l~~~l~~ 174 (286)
T PRK14275 129 PNPFPK-SIFDNIAYGPRLHGINDK-K------------------QL--------------EEIVEKSLRKAALWDEVSD 174 (286)
T ss_pred CCCCcc-CHHHHHHhHHHhcCCCcH-H------------------HH--------------HHHHHHHHHHhCCccchhh
Confidence 988875 999999986432211000 0 00 01123356666663 3
Q ss_pred cccccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHh
Q 000506 329 CADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYD 408 (1458)
Q Consensus 329 ~~dt~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~ 408 (1458)
..++.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ + .+|+.++|+.+++.+
T Consensus 175 ~~~~~~~~-----LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~-~tvIivsH~~~~~~~ 246 (286)
T PRK14275 175 RLDKNALG-----LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--S-YTIMIVTHNMQQASR 246 (286)
T ss_pred HhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHH
Confidence 34555544 999999999999999999999999999999999999999999999864 3 456667788889999
Q ss_pred ccCEEEEEcCCeEEEEcChhhHH
Q 000506 409 LFDNIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 409 ~~D~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++|++++|++|+++..|+.+++.
T Consensus 247 ~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 247 VSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999988764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=348.90 Aligned_cols=221 Identities=21% Similarity=0.272 Sum_probs=180.3
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCC---ceeeEEEECC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YTEGDISISG 931 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1458)
.++++|+++.++.. .+.+.+|+|||++|++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 37889998877410 01246999999999999999999999999999999999987631 3689999999
Q ss_pred eeCCcc------ccc-ceEEEEccCCC--CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc---cccc
Q 000506 932 YPKNQA------TFA-RVSGYCEQNDI--HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL---TNAM 999 (1458)
Q Consensus 932 ~~~~~~------~~~-~~~gyv~Q~~~--~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~---~~~~ 999 (1458)
.+.... ..+ +.+||++|++. +.+.+||+|++.+..... ...+..+.+++++++++.+||.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 876421 122 47999999974 567789999987643221 123344556778999999999763 3555
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhceE
Q 000506 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1078 (1458)
Q Consensus 1000 vg~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hq~s~~i~~~~D~v 1078 (1458)
+ ..|||||||||+||+||+.+|++|+|||||+|||+.++..++++|++++++ |+|||+++|++. .+.+.||++
T Consensus 154 ~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 P-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred C-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 4 479999999999999999999999999999999999999999999999775 899999999986 577889999
Q ss_pred EEEecCcEEEEeCCC
Q 000506 1079 LLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1079 lll~~gG~~~~~G~~ 1093 (1458)
++|++ |++++.|+.
T Consensus 228 ~~l~~-G~i~~~g~~ 241 (529)
T PRK15134 228 AVMQN-GRCVEQNRA 241 (529)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 788888875
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=315.41 Aligned_cols=207 Identities=23% Similarity=0.314 Sum_probs=163.9
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD--LKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 98 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCcc
Confidence 46999999999999999999999999999999999987531 11389999999987542 124569999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcc----ccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI----CAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~d 331 (1458)
++. ||+||+.|..+..+.... .+. ...+..+++.++|.+ ..+
T Consensus 99 ~~~-tv~eni~~~~~~~~~~~~-------------------~~~--------------~~~~~~~l~~~~l~~~l~~~~~ 144 (253)
T PRK14261 99 FPK-SIYENVAYGPRIHGEKNK-------------------KTL--------------DTIVEKSLKGAALWDEVKDRLH 144 (253)
T ss_pred Ccc-cHHHHHHhhHHhcCCCCH-------------------HHH--------------HHHHHHHHHHhcCchhhHHHhh
Confidence 875 999999986543221000 000 011233566666642 234
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ + .+++.++|+.+++.+++|
T Consensus 145 ~~~~~-----LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~-~tvii~sh~~~~~~~~~d 216 (253)
T PRK14261 145 DSALS-----LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--E-YTVIIVTHNMQQAARVSD 216 (253)
T ss_pred cChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--C-ceEEEEEcCHHHHHhhCC
Confidence 44444 999999999999999999999999999999999999999999999864 3 456667788889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
++++|++|+++..|+.+++.
T Consensus 217 ~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 217 YTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred EEEEEECCEEEEcCCHHHHH
Confidence 99999999999999988763
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=313.71 Aligned_cols=207 Identities=22% Similarity=0.317 Sum_probs=162.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCcccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD--DDLKLTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
+++|+|+|+++++||+++|+|||||||||||++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.+
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 459999999999999999999999999999999999865 3212389999999987431 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc----cccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD----ICAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 331 (1458)
++ .||+||+.+.....+.... + . . .......++.+|+. +..+
T Consensus 98 ~~-~tv~~nl~~~~~~~~~~~~-~---~---------------~--------------~~~~~~~l~~~~l~~~i~~~~~ 143 (252)
T PRK14255 98 FP-FSIYENVIYGLRLAGVKDK-A---V---------------L--------------DEAVETSLKQAAIWDEVKDHLH 143 (252)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH-H---H---------------H--------------HHHHHHHHHHcCCccchhhHHh
Confidence 87 6999999886443221100 0 0 0 00112345555553 3344
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
..+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++++.++|+.+++.+.+|
T Consensus 144 ~~~~~-----LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d 215 (252)
T PRK14255 144 ESALS-----LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--Q-YTIILVTHSMHQASRISD 215 (252)
T ss_pred cCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--C-CEEEEEECCHHHHHHhCC
Confidence 55555 999999999999999999999999999999999999999999999864 3 456667788889999999
Q ss_pred EEEEEcCCeEEEEcChhhHH
Q 000506 412 NIILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~~G~iv~~G~~~~~~ 431 (1458)
+|++|++|+++.+|++.++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 216 KTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=362.72 Aligned_cols=206 Identities=25% Similarity=0.381 Sum_probs=166.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 259 (1458)
+++|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+|+.
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG- 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-
Confidence 46999999999999999999999999999999999999998 9999999999877643 6789999999999965
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
|++|||.++.. .. +++++.+.++.+.+. + .++ .|+...||.+|+. .
T Consensus 568 Ti~eNi~l~~~----~~------------------~~~~i~~al~~~~l~--------~-~i~--~lp~gl~t~i~e~-G 613 (710)
T TIGR03796 568 TVRDNLTLWDP----TI------------------PDADLVRACKDAAIH--------D-VIT--SRPGGYDAELAEG-G 613 (710)
T ss_pred cHHHHhhCCCC----CC------------------CHHHHHHHHHHhCCH--------H-HHH--hCcCcccceeccC-C
Confidence 99999986421 00 111222222222111 1 111 3667889999874 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCC
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G 419 (1458)
..||||||||++|||||+++|++++||||||+||+.+..++.+.|++ .++|+|++. |.. +....+|+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~Iiit-Hrl-~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVA-HRL-STIRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEe-cCH-HHHHhCCEEEEEeCC
Confidence 66999999999999999999999999999999999999999999986 255666554 444 445679999999999
Q ss_pred eEEEEcChhhHHH
Q 000506 420 QIVYQGPREKVLE 432 (1458)
Q Consensus 420 ~iv~~G~~~~~~~ 432 (1458)
+++.+|+++++.+
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=364.45 Aligned_cols=210 Identities=27% Similarity=0.401 Sum_probs=174.9
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++|+||+|.++.. +++.+|+|+|++|+|||.+||+||||||||||+++|+|..+ +.+|+|.+||++.
T Consensus 478 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i 545 (711)
T TIGR00958 478 LIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVPL 545 (711)
T ss_pred eEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence 58999999998521 12569999999999999999999999999999999999887 4789999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCC
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL-------TNAMVGLPG 1004 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 1004 (1458)
.+ ..+++.++||+|++.++. .|++||+.++. + +.+ ++.+.++++..++.+. .|+.+|..
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~- 614 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL----T-DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK- 614 (711)
T ss_pred HhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC----C-CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC-
Confidence 43 456788999999998875 69999998752 1 222 2346677777776543 46777754
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
..+||||||||++|||||+++|+||+||||||+||+.++..+++ .. ..+++|+|+++|+++ ..+.+|+|++|++
T Consensus 615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~- 688 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK- 688 (711)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999998 22 235899999999985 5678999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|+++..|+.
T Consensus 689 G~ive~Gt~ 697 (711)
T TIGR00958 689 GSVVEMGTH 697 (711)
T ss_pred CEEEEeeCH
Confidence 799999985
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=317.44 Aligned_cols=208 Identities=26% Similarity=0.393 Sum_probs=163.0
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++ +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~ 67 (236)
T cd03253 2 EFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIRE 67 (236)
T ss_pred EEEEEEEEeC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhh
Confidence 4677776652 12458999999999999999999999999999999999876 478999999987532
Q ss_pred ---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCCCCC
Q 000506 937 ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNA-------MVGLPGVD 1006 (1458)
Q Consensus 937 ---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~vg~~~~~ 1006 (1458)
..+++.++|++|++.+++ .||+||+.+... ....+ .+.+.++..++.+..+. ... ..+.
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~----~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~ 136 (236)
T cd03253 68 VTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDE----EVIEAAKAAQIHDKIMRFPDGYDTIVG-ERGL 136 (236)
T ss_pred CCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHH----HHHHHHHHcCcHHHHHhccccccchhh-cCCC
Confidence 234567999999988775 699999987531 11111 12333444444332211 111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecCcE
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1007 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~gG~ 1086 (1458)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ |+|||+++|++. .+ ..+|++++|++ |+
T Consensus 137 ~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~~-g~ 212 (236)
T cd03253 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLKD-GR 212 (236)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999876 999999999986 35 45999999986 78
Q ss_pred EEEeCCC
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~~~G~~ 1093 (1458)
+++.|+.
T Consensus 213 i~~~~~~ 219 (236)
T cd03253 213 IVERGTH 219 (236)
T ss_pred EEeeCCH
Confidence 8888764
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=316.94 Aligned_cols=207 Identities=23% Similarity=0.310 Sum_probs=164.8
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCC--cccEEEECCeecCCc-----cccceEEEecCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLK--LTGKIKYCGHEFKEF-----VPQRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~--~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 255 (1458)
.++|+|+|+++++||+++|+|+|||||||||++|+|.++++.. .+|+|.++|+++... ..++.++|++|++.+
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 99 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP 99 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccccc
Confidence 4599999999999999999999999999999999999875311 389999999987531 123569999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCc----cccc
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLD----ICAD 331 (1458)
Q Consensus 256 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~d 331 (1458)
++ +||+||+.++.+..+.. ++.+. ...++.+++.+|+. +..+
T Consensus 100 ~~-~tv~enl~~~~~~~~~~-------------------~~~~~--------------~~~~~~~l~~~~l~~~l~~~~~ 145 (259)
T PRK14260 100 FP-MSIYENVAYGVRISAKL-------------------PQADL--------------DEIVESALKGAALWQEVKDKLN 145 (259)
T ss_pred CC-ccHHHHHHHHHHHhcCC-------------------CHHHH--------------HHHHHHHHHHcCCcchhhhHhc
Confidence 87 89999998764322100 00000 01123456667763 3445
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccC
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 411 (1458)
+.+.+ |||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++++ + .+++.++|+.+++.+++|
T Consensus 146 ~~~~~-----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~i~~~~d 217 (259)
T PRK14260 146 KSALG-----LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--E-LTIAIVTHNMQQATRVSD 217 (259)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhcC
Confidence 55544 999999999999999999999999999999999999999999999864 4 456667788899999999
Q ss_pred EEEEEc-----CCeEEEEcChhhHH
Q 000506 412 NIILLS-----EGQIVYQGPREKVL 431 (1458)
Q Consensus 412 ~v~lL~-----~G~iv~~G~~~~~~ 431 (1458)
++++|+ +|+++++|+++++.
T Consensus 218 ~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 218 FTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred eEEEEeccCCCCceEEEeCCHHHHh
Confidence 999997 59999999998863
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=304.27 Aligned_cols=183 Identities=25% Similarity=0.340 Sum_probs=153.7
Q ss_pred EEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeCCc
Q 000506 857 AFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ 936 (1458)
Q Consensus 857 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1458)
+++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|.....+.+|+|.+||.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~ 68 (200)
T cd03217 2 EIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68 (200)
T ss_pred eEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence 4677776653 245999999999999999999999999999999999984212478999999998643
Q ss_pred c---c-ccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000506 937 A---T-FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQ 1012 (1458)
Q Consensus 937 ~---~-~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1012 (1458)
. . .++.++|++|++.+++..|+++++ +.. ...|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l----------------------------------~~~-----~~~LS~G~ 109 (200)
T cd03217 69 LPPEERARLGIFLAFQYPPEIPGVKNADFL----------------------------------RYV-----NEGFSGGE 109 (200)
T ss_pred CCHHHHhhCcEEEeecChhhccCccHHHHH----------------------------------hhc-----cccCCHHH
Confidence 2 1 234599999999888888888766 000 13699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHH-hhceEEEEecCcEEEEeC
Q 000506 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE-AFDELLLMKRGGQVIYAG 1091 (1458)
Q Consensus 1013 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~-~~D~vlll~~gG~~~~~G 1091 (1458)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+ .+|++++|++ |+++..|
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~~ 187 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYD-GRIVKSG 187 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999999877899999999986 4555 6999999985 7898888
Q ss_pred CC
Q 000506 1092 PL 1093 (1458)
Q Consensus 1092 ~~ 1093 (1458)
+.
T Consensus 188 ~~ 189 (200)
T cd03217 188 DK 189 (200)
T ss_pred cH
Confidence 53
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=330.35 Aligned_cols=211 Identities=24% Similarity=0.375 Sum_probs=179.3
Q ss_pred EEEEeeeeeEeecchhhhhcccccccceecccceeEEeCCeEEEEecCCCCchhHHHhhhcCCcCCCceeeEEEECCeeC
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1458)
.++++|++++++.+ +.++|+|+|+++++||.+||+|+||||||||+..|+|-.. +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 68999999998642 3469999999999999999999999999999999999876 5799999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCC
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT-------NAMVGLPG 1004 (1458)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTV~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~~ 1004 (1458)
.. ..+++.+++++|...++. -|+|+||.++. .+.+ ++.+.++++.+||++.. |+.+|..
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~- 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PDAS----DEELWAALQQVGLEKLLESAPDGLNTWLGEG- 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CCCC----HHHHHHHHHHcCHHHHHHhChhhhhchhccC-
Confidence 43 346678999999877664 69999998752 2233 34478899999998754 4456644
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhceEEEEecC
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq~s~~i~~~~D~vlll~~g 1084 (1458)
.+.||||||||++|||+|++|.++++|||||.|||+.++++|++.|.+-+ +|+|+|++||+.. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 46899999999999999999999999999999999999999999999865 4899999999875 5688999999985
Q ss_pred cEEEEeCCC
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~~~G~~ 1093 (1458)
|+++..|..
T Consensus 548 Gkiie~G~~ 556 (573)
T COG4987 548 GKIIEEGTH 556 (573)
T ss_pred CeeeecCCH
Confidence 799999875
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=306.73 Aligned_cols=190 Identities=22% Similarity=0.309 Sum_probs=155.3
Q ss_pred cceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCcc-------ccceEEEecCCCC
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV-------PQRTCAYISQNDL 254 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~ 254 (1458)
++++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFA 86 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHHHHHhCeeEEecchh
Confidence 356999999999999999999999999999999999999987 999999999854221 2457999999999
Q ss_pred CCCCCCHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccc
Q 000506 255 HFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMV 334 (1458)
Q Consensus 255 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 334 (1458)
+++.+||+||+.+.....+... .+ ....++.+++.+||++..|+.+
T Consensus 87 ~~~~~t~~e~~~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~ 132 (206)
T TIGR03608 87 LIENETVEENLDLGLKYKKLSK----------KE------------------------KREKKKEALEKVGLNLKLKQKI 132 (206)
T ss_pred hccCCcHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCchhhhcCCh
Confidence 9999999999998643221100 00 0112355788999988888887
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEE
Q 000506 335 GDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNII 414 (1458)
Q Consensus 335 g~~~~rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~ 414 (1458)
.+ ||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+. +.|+++ ++|+.+. .+.+|+++
T Consensus 133 ~~-----lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~-~sh~~~~-~~~~d~i~ 204 (206)
T TIGR03608 133 YE-----LSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIII-VTHDPEV-AKQADRVI 204 (206)
T ss_pred hh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEE-EeCCHHH-HhhcCEEE
Confidence 66 9999999999999999999999999999999999999999999998753 445544 5565554 46899998
Q ss_pred EE
Q 000506 415 LL 416 (1458)
Q Consensus 415 lL 416 (1458)
+|
T Consensus 205 ~l 206 (206)
T TIGR03608 205 EL 206 (206)
T ss_pred eC
Confidence 75
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=353.71 Aligned_cols=209 Identities=22% Similarity=0.401 Sum_probs=168.3
Q ss_pred ceeeeceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccEEEECCeecCCccc---cceEEEecCCCCCCCCC
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 259 (1458)
+++|+|+|++|++||.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+|+.
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~- 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND- 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeecc-
Confidence 46999999999999999999999999999999999999998 9999999999877543 5679999999999975
Q ss_pred CHHHHHHHhhhhccCCchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHHhhhchhhHHHHHHHHcCCcccccccccCccC
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 339 (1458)
|++|||.++... . ..++++...++.+.+ +..++ .|++..||.+|+. .
T Consensus 432 Ti~~Ni~~~~~~---~------------------~~~~~i~~al~~~~l---------~~~i~--~lp~Gldt~ig~~-g 478 (582)
T PRK11176 432 TIANNIAYARTE---Q------------------YSREQIEEAARMAYA---------MDFIN--KMDNGLDTVIGEN-G 478 (582)
T ss_pred hHHHHHhcCCCC---C------------------CCHHHHHHHHHHhCc---------HHHHH--hcccccCceeCCC-C
Confidence 999999874210 0 011122222222211 11122 3677889999974 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEEeCChhHHHhccCEEEEEcCC
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGLSGGqkkRvsia~aL~~~p~illLDEPtsgLD~~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~v~lL~~G 419 (1458)
+.||||||||++|||||+++|++++||||||+||+.+...+.+.|+++.+ ++|+|++. |.. +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~Vt-Hr~-~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIA-HRL-STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEe-cch-HHHHhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999998753 45665554 443 567789999999999
Q ss_pred eEEEEcChhhHHH
Q 000506 420 QIVYQGPREKVLE 432 (1458)
Q Consensus 420 ~iv~~G~~~~~~~ 432 (1458)
++++.|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999998864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1458 | ||||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-11 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 9e-11 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-10 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 6e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 6e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 6e-10 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-09 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-09 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-09 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-09 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 5e-09 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 5e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 6e-09 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 8e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 8e-09 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-08 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-08 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 5e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 5e-08 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 6e-08 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-07 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-07 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 3e-07 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 6e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 7e-07 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 2e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-06 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-06 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 3e-06 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-06 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-06 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-06 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 4e-06 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 4e-06 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 6e-06 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 6e-06 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 7e-06 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 7e-06 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 4e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-05 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 5e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 5e-05 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 5e-05 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 8e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-04 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 3e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 4e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 7e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 8e-04 |
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 42/184 (22%), Positives = 76/184 (41%), Gaps = 12/184 (6%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP--KNQATFAR 941
L+ +S G + L+G +GAGKTT + +++ + G +++ G + +
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRK 88
Query: 942 VSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001
+ Y + ++ E L F A S + V+ ++ L V
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS 145
Query: 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
S ++L IA L+ NP + +DEPTSGLD A V + ++ G T++
Sbjct: 146 -----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200
Query: 1062 CTIH 1065
+ H
Sbjct: 201 VSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 46/245 (18%), Positives = 75/245 (30%), Gaps = 82/245 (33%)
Query: 201 LLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKE----------FVPQRTCAYIS 250
L+GP GAGKTT L ++ + +G + G E ++P+ AY
Sbjct: 46 LIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY-- 100
Query: 251 QNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAG 310
M E + F S E E +
Sbjct: 101 ------RNMQGIEYLRFVAGFYA----------SSSSEIEEMV----------------- 127
Query: 311 QKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEIST 370
+ ++ GL V S G +++ L+ ++ ++DE ++
Sbjct: 128 -------ERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTS 175
Query: 371 GLDSSTTFQICKYMKQMV----------HVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420
GLD ++ K +KQ H + E L D I L+ G
Sbjct: 176 GLDVLNAREVRKILKQASQEGLTILVSSHNML------------EVEFLCDRIALIHNGT 223
Query: 421 IVYQG 425
IV G
Sbjct: 224 IVETG 228
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 7e-25
Identities = 51/239 (21%), Positives = 91/239 (38%), Gaps = 36/239 (15%)
Query: 867 MPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGD 926
M M+ Q + E L +SG R G + L+G +GAGK+TL+ +AG + +G
Sbjct: 1 MSIVMQLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGS 55
Query: 927 ISISGYPKNQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFV 983
I +G P A Y Q V+ L KTR +
Sbjct: 56 IQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELL 107
Query: 984 DEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIA-------VELVANPSIIFMDEPTS 1036
++V + L+ + LS + +R+ +A + ++ +DEP +
Sbjct: 108 NDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMN 162
Query: 1037 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGQVIYAGP 1092
LD + + + + G +V + H D+ L+K GG+++ +G
Sbjct: 163 SLDVAQQSALDKILSALSQQGLAIVMSSH----DLNHTLRHAHRAWLLK-GGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 5e-15
Identities = 55/275 (20%), Positives = 88/275 (32%), Gaps = 94/275 (34%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
L +SG V+ + L+GP GAGK+TLL +AG G I++ G + +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG----MTSGKGSIQFAGQPLEAWSAT 69
Query: 244 ---RTCAYISQN-DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
AY+SQ F V + + + E +
Sbjct: 70 KLALHRAYLSQQQTPPFA-TPVWHYLTL-HQ-------------HDKTRTEL-------L 107
Query: 300 DAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRV--------T 351
+ A AL +L SGG+ +RV
Sbjct: 108 NDVAGALALDD----KLGRSTNQL-------------------SGGEWQRVRLAAVVLQI 144
Query: 352 TGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEI---------TTIVSLLQP 402
T + ++LL+DE LD + Q + +I ++S
Sbjct: 145 TPQANPAG-QLLLLDEPMNSLD----------VAQQSALDKILSALSQQGLAIVMSS--- 190
Query: 403 APEAYDL------FDNIILLSEGQIVYQGPREKVL 431
+DL LL G+++ G RE+VL
Sbjct: 191 ----HDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 48/216 (22%), Positives = 84/216 (38%), Gaps = 30/216 (13%)
Query: 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARV 942
L + ++ G + A++G +G GK+TL+D+L G +G I + +
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIEV----------YQS 67
Query: 943 SGYCEQNDIHSPHVTVYESLLF-----SAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTN 997
G+ Q +V + +L D + + +D + L L
Sbjct: 68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV----AMQALDYLNLTHLAK 123
Query: 998 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDT 1056
LS QR+ + IA + + +I +DEPTS LD IV+ + +
Sbjct: 124 REF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178
Query: 1057 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
TVV T HQP+ + ++ LL+ + G
Sbjct: 179 NMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 1e-15
Identities = 41/250 (16%), Positives = 84/250 (33%), Gaps = 56/250 (22%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
+ + ++ + + +LG G GK+TLL L G + GKI+ +
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV----------YQ 66
Query: 245 TCAYISQN-DLHFGEMTVRET--MDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
+ ++ Q F +V + M GR
Sbjct: 67 SIGFVPQFFSSPFA-YSVLDIVLM---GRS-----------------------------T 93
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
++ A L L L A +SGGQ++ + + K
Sbjct: 94 HINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLILIARAIASECK 148
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421
++L+DE ++ LD + + + + +T + + QP + + + +LL++
Sbjct: 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQNF 207
Query: 422 VYQGPREKVL 431
+ G +L
Sbjct: 208 KF-GETRNIL 216
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 3e-23
Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 21/206 (10%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L ++ G + G +G GKTTL+ ++ +G+I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITKV--KGKI 80
Query: 944 GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLP 1003
+ + I ++V + L A L K K + + ++ VE+ L
Sbjct: 81 FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK----- 130
Query: 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 1062
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G ++
Sbjct: 131 -LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 189
Query: 1063 TIHQPSIDIFEAFDELLLMKRGGQVI 1088
+ D + + I
Sbjct: 190 SRE-----ELSYCDVNENLHKYSTKI 210
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 1e-15
Identities = 36/248 (14%), Positives = 79/248 (31%), Gaps = 52/248 (20%)
Query: 178 SKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEF 237
S +L+ ++ ++ + GP G GKTTLL ++ L G+I Y G
Sbjct: 17 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI 73
Query: 238 KEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
+ + ++ + + +++V + + GV + K
Sbjct: 74 TKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-----------KVNKN------- 113
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLV 357
L+ + + + +S G +RV L+
Sbjct: 114 ------------------EIMDALESVEVLDLKKKL------GELSQGTIRRVQLASTLL 149
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417
A++ ++D+ +D + ++ K + +++ I I S E D L
Sbjct: 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS-----REELSYCDVNENLH 204
Query: 418 EGQIVYQG 425
+
Sbjct: 205 KYSTKIDK 212
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 2e-21
Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 25/224 (11%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATF-- 939
+L+ +S G L G++GAGKTTL+++L + T G +++ G + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMPGKVGYSA 92
Query: 940 ----ARVSGYCEQNDIH---SPHVTVYESLL--FSAWLRLSSDIDSKTRKMFVDEVMDLV 990
+ G+ + V + ++ + + DID + R +++ LV
Sbjct: 93 ETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLV 149
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
+ +G LST +++R+ IA L+ P ++ +DEP +GLD A ++ +
Sbjct: 150 GMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSIL 204
Query: 1051 R--NTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
+ ++ H +I F ++LL+K GQ I G
Sbjct: 205 DSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGA 246
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 3e-20
Identities = 64/297 (21%), Positives = 106/297 (35%), Gaps = 67/297 (22%)
Query: 149 HIGSRAIPTLPNAVINIAENVLGSLRILPSKKR-KIQILKDVSGLVKPSRMTLLLGPPGA 207
H S +P + +I + + + + + ILK +S + +L G GA
Sbjct: 8 HHSSGLVPRGSHMLIQL-DQI--------GRMKQGKTILKKISWQIAKGDKWILYGLNGA 58
Query: 208 GKTTLLMALAGKLDDDLKLTGKIKYCGHEFKE-------------FVPQRTCAYISQNDL 254
GKTTLL L +G + G + FV
Sbjct: 59 GKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSL-----LEKF 110
Query: 255 HFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTS 314
GE V + + SG +G Y+ +I + +A L
Sbjct: 111 QEGE-RVIDVV-ISGAFKSIG-VYQ---DIDDEIRN-------------EAHQL------ 145
Query: 315 LATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDS 374
LKL+G+ A +G +S G+K+RV L+G +VL++DE + GLD
Sbjct: 146 ------LKLVGMSAKAQQYIGY-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDF 194
Query: 375 STTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVL 431
+ + + ++ + E F I+LL +GQ + QG E +L
Sbjct: 195 IARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 6e-21
Identities = 36/205 (17%), Positives = 76/205 (37%), Gaps = 29/205 (14%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQN-DI 951
G ++G +G+GKTTL+ ++G G+I I+G Y +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLP---YSGNIFING--MEVRKIRNYIRYSTNLPEA 83
Query: 952 HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVEL-EPLTNAMVGLPGVDGLST 1010
+ VTV + + L+ + E++ ++L E + + LS
Sbjct: 84 YEIGVTVNDIVYLYEELK-------GLDRDLFLEMLKALKLGEEILRRKLYK-----LSA 131
Query: 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1070
Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ + H +
Sbjct: 132 GQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH----E 184
Query: 1071 IFEAF---DELLLMKRGGQVIYAGP 1092
+ + G ++
Sbjct: 185 LDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 3e-14
Identities = 46/259 (17%), Positives = 82/259 (31%), Gaps = 58/259 (22%)
Query: 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHE 236
K + L++++ L ++LGP G+GKTTLL A++G L G I G E
Sbjct: 12 SGKGYERFSLENIN-LEVNGEKVIILGPNGSGKTTLLRAISGLLPYS----GNIFINGME 66
Query: 237 FKEFVPQRTCAYISQNDLHFG-EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKP 295
++ Y + + +TV + + G+ E
Sbjct: 67 VRKIRNYI--RYSTNLPEAYEIGVTVNDIVYLYEELKGL---------DRDLFLEM---- 111
Query: 296 DPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEM 355
LK L L + + +S GQ V T
Sbjct: 112 -------------------------LKALKLG----EEILRRKLYKLSAGQSVLVRTSLA 142
Query: 356 LVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTI-VSLLQPAPEAYDLFDNII 414
L +++ +DE +D++ I +Y+K+ I V+ +
Sbjct: 143 LASQPEIVGLDEPFENVDAARRHVISRYIKE----YGKEGILVTHEL--DMLNLYKEYKA 196
Query: 415 LLSEGQIVYQ-GPREKVLE 432
G + ++LE
Sbjct: 197 YFLVGNRLQGPISVSELLE 215
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 2e-19
Identities = 49/253 (19%), Positives = 90/253 (35%), Gaps = 35/253 (13%)
Query: 818 GQPGTEDTDMSVRSSSENVGTTGHGPKKGMVLPFQPLSLAFHHVNYSVDMPAEMKAQGIE 877
G P S E + G L F+ +L F + + D+ + ++
Sbjct: 296 GVPSVYGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFS 355
Query: 878 EDRLQ------LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISI 929
L+ +L G F + +MG +G GKTTL+ +LAG + G +++
Sbjct: 356 YPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNV 415
Query: 930 SGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDL 989
S P+ TV + LF F +V+
Sbjct: 416 SMKPQK-------IAPKFPG-------TVRQ--LFF-----KKIRGQFLNPQFQTDVVKP 454
Query: 990 VELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
+ ++ + + V LS + +R+ I + L I +DEP++ LD+ I +
Sbjct: 455 LRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKV 509
Query: 1050 VRNTV-DTGRTVV 1061
+R + +T
Sbjct: 510 IRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 2e-13
Identities = 52/272 (19%), Positives = 99/272 (36%), Gaps = 49/272 (18%)
Query: 840 GHG--PKKGMVLPFQPLSLAFHHVNYSVDMPAEM----KAQGIEEDRLQLLRDVSGVFRP 893
G G KK PF + + +N ++ A + A + RL R P
Sbjct: 57 GCGICVKK---CPFDAIQI----INLPTNLEAHVTHRYSANSFKLHRLPTPR-------P 102
Query: 894 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDIS---ISGYPKNQATFARVSGYCEQ 948
G + L+G +G GK+T + +LAG + G + I Y + + E
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLED 162
Query: 949 ND---IHSPHV-----TVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
+ I +V + + L + + V + +++LE + +
Sbjct: 163 DIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKRDI 219
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
+ LS + +R I + V + DEP+S LD + + +R+ + + V
Sbjct: 220 -----EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYV 274
Query: 1061 VCTIHQPSIDIFEA---FDELLLMKRGGQVIY 1089
+C H D+ D + ++ G +Y
Sbjct: 275 ICVEH----DLSVLDYLSDFVCIIY-GVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 60/328 (18%), Positives = 99/328 (30%), Gaps = 90/328 (27%)
Query: 99 RKQLRESILKLVEEDN-------DKFLRKLRERIDRV-----------GIDIPKIEIRYE 140
R + I L+ D L L D V + +P
Sbjct: 257 RLNAAQIIRSLLAPTKYVICVEHD--LSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGI 314
Query: 141 HLNIQGEVH-----IGSRAIPTLPNAVINIAENVLGSLRI---LPSKKRKIQILKDVSGL 192
++ + G + + A+ +N S K + +L G
Sbjct: 315 NIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGE 374
Query: 193 VKPSRMTLLLGPPGAGKTTLLMALAGKLDDD---LKLTGKIKYCGHEFKEFVPQRTCAYI 249
S + +++G G GKTTL+ LAG L D + PQ+ A
Sbjct: 375 FSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSM--------KPQK-IAPK 425
Query: 250 SQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALA 309
TVR+ ++ + + P + D
Sbjct: 426 FP-------GTVRQL-------------------FFKKIRGQFLNPQFQTD--------- 450
Query: 310 GQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEIS 369
V+K L +D D V +SGG+ +RV L PA + L+DE S
Sbjct: 451 ----------VVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALGIPADIYLIDEPS 495
Query: 370 TGLDSSTTFQICKYMKQMVHVLEITTIV 397
LDS K +++ + + T +
Sbjct: 496 AYLDSEQRIICSKVIRRFILHNKKTAFI 523
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 4e-09
Identities = 45/261 (17%), Positives = 82/261 (31%), Gaps = 73/261 (27%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKL-------DDDLKLTGKIKYC---- 233
+P ++ L+G G GK+T L LAGK DD + IKY
Sbjct: 92 FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSE 151
Query: 234 --GHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEA 291
+ K Q + ++ + G L + + ++ R
Sbjct: 152 LQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKVGELLKL-RMEKSPEDVKR----- 204
Query: 292 GIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV---SGGQKK 348
+K+L L+ + ++R + SGG+ +
Sbjct: 205 ----------------------------YIKILQLE--------NVLKRDIEKLSGGELQ 228
Query: 349 RVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV------SLLQP 402
R G V A V + DE S+ LD + ++ ++ ++ S+L
Sbjct: 229 RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA--PTKYVICVEHDLSVLD- 285
Query: 403 APEAYDLFDNIILLSEGQIVY 423
L D + ++ VY
Sbjct: 286 -----YLSDFVCIIYGVPSVY 301
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 58/253 (22%), Positives = 98/253 (38%), Gaps = 48/253 (18%)
Query: 855 SLAFHHVN--YSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMD 912
+ +V+ + P E KA L +VS V G + G +G+GK+TL+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKA----------LENVSLVINEGECLLVAGNTGSGKSTLLQ 51
Query: 913 VLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPH-----VTVYESLLFSAW 967
++AG T GD+ G K R G Q P V++ + F+
Sbjct: 52 IVAGLIEP--TSGDVLYDGERKKGYEIRRNIGIAFQY----PEDQFFAERVFDEVAFAVK 105
Query: 968 -LRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVD-------GLSTEQRKRLTIA 1019
D V + M+ VGL LS +++R+ IA
Sbjct: 106 NFYPDRDPVPL-----VKKAME----------FVGLDFDSFKDRVPFFLSGGEKRRVAIA 150
Query: 1020 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1079
+V P I+ +DEP GLD ++R V G+TV+ H + D ++
Sbjct: 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVV 209
Query: 1080 LMKRGGQVIYAGP 1092
++++ G+ ++ G
Sbjct: 210 VLEK-GKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 52/260 (20%), Positives = 102/260 (39%), Gaps = 58/260 (22%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
+ L++VS ++ L+ G G+GK+TLL +AG + +G + Y G K + +
Sbjct: 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI---EPTSGDVLYDGERKKGYEIR 77
Query: 244 RTCAYISQN-DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAY 302
R Q + F V + + F+ + + K+A
Sbjct: 78 RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD------RDPVPLVKKA----------- 120
Query: 303 MKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR----GVSGGQKKRVTTGEMLVG 358
++ +GLD D + +SGG+K+RV ++V
Sbjct: 121 ------------------MEFVGLDF-------DSFKDRVPFFLSGGEKRRVAIASVIVH 155
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV---SLLQPAPEAYDLFDNIIL 415
+L++DE GLD + + +++ L T I+ + + D +++
Sbjct: 156 EPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISHDI----ETVINHVDRVVV 210
Query: 416 LSEGQIVYQGPREKVLEFFE 435
L +G+ V+ G R + LE ++
Sbjct: 211 LEKGKKVFDGTRMEFLEKYD 230
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 1e-17
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 29/181 (16%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKNQATFAR 941
L G R G + ++G +G GKTT + +LAG T G E D++++
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA----------- 420
Query: 942 VSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001
Y Q TVYE L S D + E++ + + L + V
Sbjct: 421 ---YKPQYIKAEYEGTVYE--LLS-----KIDSSKLNSNFYKTELLKPLGIIDLYDRNVE 470
Query: 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1060
LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 471 -----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525
Query: 1061 V 1061
+
Sbjct: 526 L 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 5e-15
Identities = 55/266 (20%), Positives = 94/266 (35%), Gaps = 68/266 (25%)
Query: 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHE 236
K L+ G ++ + ++GP G GKTT + LAG + GK+++
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDLT- 418
Query: 237 FKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
+ PQ YI E TV E +L++I + +
Sbjct: 419 -VAYKPQ----YIKAEY----EGTVYE----------------LLSKIDSSKLNSNFY-- 451
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
+LK LG+ D V D +SGG+ +RV L
Sbjct: 452 --------------------KTELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATL 486
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV-----SLLQPAPEAYDLFD 411
+ A + L+DE S LD + + ++ ++ E T +V ++ + D
Sbjct: 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI------DYVSD 540
Query: 412 NIILLSEGQIVYQGPREKVLEFFEYM 437
+I+ EG+ G + E M
Sbjct: 541 RLIVF-EGEPGRHGRALPPMGMREGM 565
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 1e-14
Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 23/219 (10%)
Query: 850 PFQPLSLAFHHVNYSVDMPAEM-KAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKT 908
PF +S+ VN + + G+ L + + G++ ++G +G GKT
Sbjct: 80 PFNAISI----VNLPEQLDEDCVHRYGVNAFVL----YRLPIVKDGMVVGIVGPNGTGKT 131
Query: 909 TLMDVLAGR----KTGGYTEGDISISGYPKN--QATFARVSGYCEQNDIHSPHVTVYESL 962
T + +LAG+ D I + N Q F R+ + + +V +
Sbjct: 132 TAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKA 191
Query: 963 LFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVEL 1022
+ ++ + +EV+ +ELE + + + LS + +R+ IA L
Sbjct: 192 VKG---KVRELLKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAAL 243
Query: 1023 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
+ F DEP+S LD R V R +R + G+ V+
Sbjct: 244 LRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 7e-11
Identities = 38/203 (18%), Positives = 68/203 (33%), Gaps = 34/203 (16%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
+ +VK + ++GP G GKTT + LAG+L +L +
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL---CEDNDSWDNVIR----- 157
Query: 245 TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMK 304
N+L ++ EI K + P+
Sbjct: 158 ---AFRGNELQNYFERLKN------------------GEIRPVVKPQYVDLLPKAVKGKV 196
Query: 305 ATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLL 364
L + V+K L L+ D + +SGG+ +RV L+ A
Sbjct: 197 RELLKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYF 251
Query: 365 MDEISTGLDSSTTFQICKYMKQM 387
DE S+ LD ++ + ++++
Sbjct: 252 FDEPSSYLDIRQRLKVARVIRRL 274
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 4e-17
Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 29/181 (16%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKNQATFAR 941
L G + G + ++G +G GKTT + +LAG T G E D++++
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA----------- 350
Query: 942 VSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001
Y Q TVYE L S D + E++ + + L + V
Sbjct: 351 ---YKPQYIKADYEGTVYE--LLS-----KIDASKLNSNFYKTELLKPLGIIDLYDREVN 400
Query: 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1060
LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 401 -----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 1061 V 1061
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 7e-14
Identities = 58/268 (21%), Positives = 97/268 (36%), Gaps = 74/268 (27%)
Query: 178 SKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEF 237
K L+ G +K + ++GP G GKTT + LAG + GKI++
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLT-- 348
Query: 238 KEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
+ PQ YI + E TV YE+L++I + +
Sbjct: 349 VAYKPQ----YIKAD----YEGTV----------------YELLSKIDASKLNSNFY--- 381
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV---SGGQKKRVTTGE 354
T+ +LK LG+ D R V SGG+ +RV
Sbjct: 382 ------------------KTE-LLKPLGII--------DLYDREVNELSGGELQRVAIAA 414
Query: 355 MLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV-----SLLQPAPEAYDL 409
L+ A + L+DE S LD + + ++ ++ E T +V ++ +
Sbjct: 415 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID------YV 468
Query: 410 FDNIILLSEGQIVYQGPREKVLEFFEYM 437
D +++ EG+ G + E M
Sbjct: 469 SDRLMVF-EGEPGKYGRALPPMGMREGM 495
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-12
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 22/180 (12%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYTEGDISISGYPKN--QATFARVSGY 945
+ G++ ++G +G GK+T + +LAG+ G D I + N Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 946 CEQNDIH----SPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001
+I +V + + + L + ++EV+ +ELE + +
Sbjct: 104 ---GEIRPVVKPQYVDLIPKAVKGKVIEL---LKKADETGKLEEVVKALELENVLEREIQ 157
Query: 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 158 H-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 48/208 (23%)
Query: 187 KDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKL-----DDDLKLTGKIKYC-GHEFKEF 240
+VK + ++GP G GK+T + LAG+L D+ G I+ G+E + +
Sbjct: 38 LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97
Query: 241 VPQRTCAYISQNDLHFGEMTVRETM-DFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
+ I V+ D + G E+L + K + E+
Sbjct: 98 FEKLKNGEIRPV--------VKPQYVDLIPK-AVKGKVIELLKKADETGKLEEVVKALEL 148
Query: 300 DAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGP 359
+ ++ + L SGG+ +RV L+
Sbjct: 149 ENVLER-------------EIQHL-------------------SGGELQRVAIAAALLRN 176
Query: 360 AKVLLMDEISTGLDSSTTFQICKYMKQM 387
A DE S+ LD + ++++
Sbjct: 177 ATFYFFDEPSSYLDIRQRLNAARAIRRL 204
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 1e-16
Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 22/181 (12%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L +G + G + ++G +G GKTT +L G T EG ++ ++
Sbjct: 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK---------QIL 332
Query: 944 GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLP 1003
Y Q + TV + +L +S T F +EV + L L + V
Sbjct: 333 SYKPQRIFPNYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN-- 384
Query: 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1063
LS + ++L IA L + +D+P+S LD IV + ++ + V
Sbjct: 385 ---DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFI 441
Query: 1064 I 1064
I
Sbjct: 442 I 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 53/293 (18%), Positives = 101/293 (34%), Gaps = 78/293 (26%)
Query: 178 SKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEF 237
KK L +G K + +LGP G GKTT L G++ D G +
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTP----- 327
Query: 238 KEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
++ +Y Q + TV++ ++ + +
Sbjct: 328 ----EKQILSYKPQRIFPNYDGTVQQYLE--------------------NASKDALSTSS 363
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLV 357
+ V K L L ++ V D +SGG+ +++ L
Sbjct: 364 WF-----------------FEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLA 401
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV-----SLLQPAPEAYDLFDN 412
A + ++D+ S+ LD + + K +K++ + T + S+ + D
Sbjct: 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHD------YIADR 455
Query: 413 IILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQE--VTSKKDQEQY 463
II+ +G+ G + + G+ +FL+E VT ++D E
Sbjct: 456 IIVF-KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 5e-12
Identities = 53/301 (17%), Positives = 102/301 (33%), Gaps = 34/301 (11%)
Query: 884 LRDVS-GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATF--A 940
+ + + ++G +G GKTT++ +LAG + + + + G + F
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV-GKDEVLKRFRGK 72
Query: 941 RVSGY------CEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
+ Y E +H Y S + + + DEV +L+ +
Sbjct: 73 EIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEI--LTKIDERGKKDEVKELLNMTN 130
Query: 995 LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
L N + LS +RL +A L+ + D+P+S LD R + + +R +
Sbjct: 131 LWN-----KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL 185
Query: 1055 DTGRTVVCTIHQPSIDIF---EAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVP 1111
+ V+ H D+ D + ++ G +Y + + A G+
Sbjct: 186 K-NKYVIVVDH----DLIVLDYLTDLIHIIY-GESSVYGRV--------SKSYAARVGIN 231
Query: 1112 RITNGYNPATWMLEISTPTAEAQLNVDFADIYVRSSLYQRNEELIKELSTPAPGSSDLYF 1171
GY PA M V D+ + ++IK+L +
Sbjct: 232 NFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA 291
Query: 1172 P 1172
Sbjct: 292 K 292
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 53/332 (15%), Positives = 98/332 (29%), Gaps = 77/332 (23%)
Query: 186 LKDVS-GLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
K K + + +LG G GKTT+L LAG++ +P
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEI--------------------IP-- 51
Query: 245 TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKP--------- 295
+FG+ + D + R + + + +K
Sbjct: 52 ----------NFGDPNSKVGKDEVLKRF----RGKEIYNYFKELYSNELKIVHKIQYVEY 97
Query: 296 DPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEM 355
+ L D V +LL + + +SGG +R+
Sbjct: 98 ASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI-----LSGGGLQRLLVAAS 152
Query: 356 LVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV-----SLLQPAPEAYDLF 410
L+ A V + D+ S+ LD + K +++++ IV +L L
Sbjct: 153 LLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVVDHDLIVLD------YLT 204
Query: 411 DNIILLSEGQIVYQG------PREKVLEFF------EYMGFKCPDRKGVADFLQEVTSKK 458
D I ++ VY R + F E M + + K + + ++ K
Sbjct: 205 DLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSK 264
Query: 459 DQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQ 490
D + + V G+
Sbjct: 265 DLKTKMKWTKIIKKLGDFQLVVDNG-EAKEGE 295
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 25/219 (11%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP-----KNQAT 938
L+ ++ + G +TA++G +G GK+TL G + G I P K
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPIDYSRKGIMK 81
Query: 939 FARVSGYCEQN-D--IHSPHVTVYESLLFSAW-LRLSSDIDSKTRKMFVDEVMDLVELEP 994
G Q+ D + S +VY+ + F A ++L D + + R VD + +E
Sbjct: 82 LRESIGIVFQDPDNQLFSA--SVYQDVSFGAVNMKLPED-EIRKR---VDNALKRTGIEH 135
Query: 995 LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-T 1053
L + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 136 LKDKPTHC-----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190
Query: 1054 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
+ G T++ H + D + +MK G+VI G
Sbjct: 191 KELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 3e-13
Identities = 62/280 (22%), Positives = 110/280 (39%), Gaps = 58/280 (20%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEF---KEFVP 242
LK ++ +K +T +LG G GK+TL G L +G+I + ++ +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIM 80
Query: 243 Q--RTCAYISQN-DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
+ + + Q+ D +V + + F + + EI +R A
Sbjct: 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA-------- 127
Query: 300 DAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGP 359
LK G++ D +S GQKKRV +LV
Sbjct: 128 ---------------------LKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLVME 161
Query: 360 AKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVS---LLQPAPEAYDLFDNIILL 416
KVL++DE + GLD +I K + +M L IT I++ + DN+ ++
Sbjct: 162 PKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI----DIVPLYCDNVFVM 217
Query: 417 SEGQIVYQGPREKVL---EFFEYMGFKCPDRKGVADFLQE 453
EG+++ QG ++V E + + P + + L+E
Sbjct: 218 KEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 47/207 (22%), Positives = 80/207 (38%), Gaps = 45/207 (21%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDI-----SISGYP 933
+ L VS G +T ++G +G+GK+TL++V+ TG EG + I+
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVI----TGFLKADEGRVYFENKDITNKE 75
Query: 934 KNQA-------TFARVSGYCEQNDIHS-PHVTVYE-----------SLLFSAWLRLSSDI 974
+ TF Q +TV E S L S + +
Sbjct: 76 PAELYHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPK 126
Query: 975 DSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP 1034
+ + + ++++ ++L L + G LS Q K + I L+ NP +I MDEP
Sbjct: 127 EEEMVEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEP 180
Query: 1035 TSGLDARAAAIVMRTVRNTVDTGRTVV 1061
+G+ A + V G T +
Sbjct: 181 IAGVAPGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 1e-09
Identities = 50/206 (24%), Positives = 80/206 (38%), Gaps = 33/206 (16%)
Query: 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRT 245
L VS V +TL++GP G+GK+TL+ + G L D G++ + + P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 246 CAY-IS---QNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
Y I Q EMTV E + C G + + ++ E +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPG---ESPLNSLFYKKWIPK------EEEM 130
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
KA + L+ L L D G+ +SGGQ K V G L+ K
Sbjct: 131 VEKAFKI------------LEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPK 173
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQM 387
+++MDE G+ I ++ ++
Sbjct: 174 MIVMDEPIAGVAPGLAHDIFNHVLEL 199
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 51/201 (25%), Positives = 95/201 (47%), Gaps = 16/201 (7%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YTEGDISISGYPK 934
E+ + L++V+ + G ++MG SG+GK+T+++++ + T G +I +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 935 NQATFAR--VSGYCEQ--NDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV 990
++ T R G+ Q N I P +T E++ + + + R+ E + +
Sbjct: 75 DELTKIRRDKIGFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA 132
Query: 991 ELEPLTNAMVG-LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
ELE P LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 133 ELE---ERFANHKPN--QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL 187
Query: 1050 VRN-TVDTGRTVVCTIHQPSI 1069
++ + G+TVV H ++
Sbjct: 188 LKKLNEEDGKTVVVVTHDINV 208
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 5e-14
Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 25/200 (12%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YTEGDISISGYPKNQA 937
++L+ +S + G +++G SG+GK+TL+ +L T G + + +
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 938 TFAR--VSGYCEQ--NDIHSPHVTVYES----LLFSAWLRLSSDIDSKTRKMFVDEVMDL 989
+ R G+ Q I P +T E+ +L K K + ++
Sbjct: 77 SLLRNRKLGFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAKERGEYLLSE 127
Query: 990 VELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
+ L + + P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 128 LGLG---DKLSRKPY--ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182
Query: 1050 VRNTVDTGRTVVCTIHQPSI 1069
+ G ++V H+ +
Sbjct: 183 FLKINEGGTSIVMVTHEREL 202
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 3e-13
Identities = 107/722 (14%), Positives = 200/722 (27%), Gaps = 242/722 (33%)
Query: 139 YEHLNIQ-GEVHIGSRAI-PTLPNAVINIAE--NVLGSLRILPSKKRKIQILKDVSGLVK 194
+ H++ + GE + I +A ++ + +V + + SK+ I+ +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 195 PSRM-TLLLGPPGAGKTTLLMALAGKLDDDLK-LTGKIKYCGHEFKEFVPQR-TCAYISQ 251
R+ LL + + + L + K L IK E ++ P T YI Q
Sbjct: 64 TLRLFWTLLS---KQEEMVQKFVEEVLRINYKFLMSPIKT---EQRQ--PSMMTRMYIEQ 115
Query: 252 -----NDLH-FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAY-MK 304
ND F + V +R + ++ R+ ++P + +
Sbjct: 116 RDRLYNDNQVFAKYNV--------------SRLQPYLKL--RQALLELRPAKNVLIDGVL 159
Query: 305 ATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV---SGGQKKRVTTGEMLVGPAK 361
+G KT +A LD+C V +M + + P
Sbjct: 160 G---SG-KTWVA---------LDVCLSYKVQCKMDFKIFWLNLKNCNS---------PET 197
Query: 362 VLLMDE-ISTGLDSSTTFQICKYMKQMVHVLEITT--IVSLL--QPAPEAYDLFDNIILL 416
VL M + + +D + T + + + + LL +P + N
Sbjct: 198 VLEMLQKLLYQIDPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN---- 252
Query: 417 SEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISV 476
V K F C L +T+ R+ V
Sbjct: 253 -----VQ---NAKAWNAFN---LSCK-------IL--LTT---------------RFKQV 277
Query: 477 SDFVQGFSSFHVGQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFR-ACFGREWLLMK 535
+DF+ ++ H+ + ++ +L+ DL R
Sbjct: 278 TDFLSAATTTHISL---DHHSMTLTPDEV--KSLLLKYLDCRPQDLPREVL--------T 324
Query: 536 RNSFVYIFKTSQITIMSLIALTVFFRTEMPVGNVADGAKFYGALFFSLINLMFNGLAELA 595
N +S+IA R + D K L ++ + L L
Sbjct: 325 TNPRR----------LSIIAE--SIR-DGL--ATWDNWKHVN--CDKLTTIIESSLNVLE 367
Query: 596 FTVFRLPVFFKQRDHLFYPPWAYALPIFV--LRIPLSILESAIWVCLTYYTIGFAPAASR 653
+R +F L +F IP +L IW + +
Sbjct: 368 PAEYR---------KMFD-----RLSVFPPSAHIPTILLSL-IWFDVIKSDV-------- 404
Query: 654 LFRQYLAFFAVNSMALSLFRFIGSIGRTEVVANTLGTFTLLLVFVLGGFVIAKDDIEPFM 713
VV N L ++L+ K E
Sbjct: 405 ----------------------------MVVVNKLHKYSLV----------EKQPKE--- 423
Query: 714 IWGYYVSPMMYGQNAIVINEFLDERWSKPVSDPKIHEPTVGKLLLKSRGF----FTV--- 766
P +Y L+ + K ++ +H V + + F
Sbjct: 424 --STISIPSIY----------LELK-VKLENEYALHRSIVDHYNIP-KTFDSDDLIPPYL 469
Query: 767 -NYWYWICIG------------ALFGFTILFNILFIAA-IQFLNPLGKAKPTVIEEDGDK 812
Y+Y IG LF + + F+ I+ + A +++
Sbjct: 470 DQYFYSH-IGHHLKNIEHPERMTLFR-MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 813 KK 814
K
Sbjct: 528 KF 529
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.6 bits (164), Expect = 3e-11
Identities = 76/530 (14%), Positives = 157/530 (29%), Gaps = 162/530 (30%)
Query: 91 VKKLGMQDRKQLRESILK------LVEEDN---------DKFLRKLRERIDRVGIDIPKI 135
V +D + + +SIL ++ + L K E + + ++ +
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV--L 87
Query: 136 EIRYEHL--NIQGEVHIGSRAIPTLPNAVINIAENVL-GSLRILPSKKRKIQILKDVSGL 192
I Y+ L I+ E R P++ + + L ++ K + L+ L
Sbjct: 88 RINYKFLMSPIKTE----QRQ-PSMMTRMYIEQRDRLYNDNQVFA--KYNVSRLQPYLKL 140
Query: 193 ------VKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTC 246
++P++ L+ G G+GKT + AL L ++ C +FK F
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSYKVQ-------CKMDFKIF------ 185
Query: 247 AYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRR-EKEAGIKPDPEIDAYMKA 305
+++ C T EML ++ + + + D + ++
Sbjct: 186 -WLN-----------------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 306 TALAGQKTSL--ATDYVLKLLGLD-------I------C------ADTMVGDQMRRGVSG 344
++ + L + Y LL L C V D +S
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF----LSA 283
Query: 345 GQKKRVTTGEMLVGP---------AKVLLMD------EISTGL------------DSSTT 377
++ + K L E+ T D T
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 378 FQICKYM--KQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG-QIVYQGPREKVLEFF 434
+ K++ ++ ++E + +++L+PA E +FD + + I P +L
Sbjct: 344 WDNWKHVNCDKLTTIIESS--LNVLEPA-EYRKMFDRLSVFPPSAHI----P-TILLSLI 395
Query: 435 -EYMGFKCPDRKGVADFLQEVTSKKDQEQYWFRKDQPYRYISVSDFVQGFSSFHVGQQLA 493
+ + ++ E+ + S L
Sbjct: 396 WFDVIKSDVM-----VVVNKLHKYSLVEKQP----KESTI-----------SIP-SIYL- 433
Query: 494 NDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIF 543
+L V + ++V + Y I F L+ Y +
Sbjct: 434 -ELKVKLENEYALHRSIV-DHYNI------PKTF-DSDDLIPPYLDQYFY 474
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 1e-08
Identities = 92/598 (15%), Positives = 170/598 (28%), Gaps = 185/598 (30%)
Query: 30 SSFREVWKSSSNAFSR--SQRDD--DDEEELRWAAIERLPTYDRLRRGMLSQLGDDGKVV 85
S + + S QRD +D + + RL Y +LR+ L +L V+
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-LLELRPAKNVL 154
Query: 86 RREVNVKKLGM-------------QDRKQLRE---SI----LKLVEEDND--KFLRKLRE 123
++ G+ K + I LK + L+KL
Sbjct: 155 ---ID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 124 RIDRVGIDIPKIEIRYEHL-NIQGEVHIGSRAIPTL------PNAVINIAENV------- 169
+ID P R +H NI+ +H + L N ++ + NV
Sbjct: 208 QID------PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKAWN 260
Query: 170 ---LGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD---DD 223
L +IL + R Q+ +S + ++L + L LD D
Sbjct: 261 AFNLSC-KILLT-TRFKQVTDFLSA-ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 224 LK---LTG---KIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTR 277
L LT ++ ++ N H + ++ S
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDG-LAT-----WDNWKHVNCDKLTTIIESS--------- 362
Query: 278 YEML--AEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLL---GLDICADT 332
+L AE + + P A++ +L L+ +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPP---SAHIPTI-------------LLSLIWFDVIKSDVMV 406
Query: 333 MVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLE 392
+V + + Q K T + + + + + H
Sbjct: 407 VVNKLHKYSLVEKQPKESTIS----------IPS-----IYLELKVK-LENEYAL-H--- 446
Query: 393 ITTIVSLLQPAPEAYDLFDNIILLSEG----QIVY----QGPREKVLEF------FEYMG 438
+IV P+ +D D I + I + E++ F F ++
Sbjct: 447 -RSIVDHYNI-PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 439 FK-------CPDRKGVADFLQEVTSKKDQEQYWFRKDQPYR-YISVSDFVQGFSSFHVGQ 490
K + + LQ+ + Y+ YI +D +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQ-----------LKF---YKPYICDND-----PKYE--- 542
Query: 491 QLANDLAVPYDKSRTHPAALVKNKYGISNMDLFRACFGREWLLMKRNSFVYIFKTSQI 548
+L N + D L+ +KY DL R LM + ++ Q+
Sbjct: 543 RLVNAIL---DFLPKIEENLICSKY----TDLLRIA------LMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 7e-08
Identities = 69/459 (15%), Positives = 128/459 (27%), Gaps = 141/459 (30%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYTEGDI---SISGYPKNQ 936
L LR V + GV G+GKT + +DV K + I ++ +
Sbjct: 144 LLELRPAKNVL-------IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMF----------VDEV 986
+ Q D P+ T + LR+ S R + + V
Sbjct: 197 TVLEMLQKLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 987 MDLVELEP--------LT--NAMVGLPGVDGLSTEQRKRLTI-----------AVELVAN 1025
+ LT V D LS +++ L+
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQV----TDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 1026 PSIIFMDEPTSGLDARAAAI----------VMRTVRNTVDTGRTVVC----TIHQPSIDI 1071
++D L +R T D + V C TI + S+++
Sbjct: 310 ----YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 1072 FEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFEAVPGVPRITNGYNPATWMLEI---ST 1128
E + ++ ++ +L + + +P I L +
Sbjct: 366 LEPAE----YRK----MF--------DRLSVFPPSAH-IPTIL---------LSLIWFDV 399
Query: 1129 PTAEAQLNVDFADIYVRSSLYQRNEE--------LIKELSTPAPGSSDLY--FPTQYSQP 1178
++ + + SL ++ + + EL L+ Y+
Sbjct: 400 IKSDVM---VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN-- 454
Query: 1179 FLIQCKACFWKQRQSYWRDPQYNALRFAVTIVVGLLFGLIFWDKGQ--KTKKQQDLQNLF 1236
I Y D QY + G K + + LF
Sbjct: 455 --IPKTFDSDDLIPPYL-D-QY-----------------FYSHIGHHLKNIEHPERMTLF 493
Query: 1237 GALYCAVFFLG------STNANSVMSVVST-ERTVFYRE 1268
++ FL ST N+ S+++T ++ FY+
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 3e-12
Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 19/163 (11%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ-ATFARV 942
+R VS R G + L+G SG+GKTT++ ++AG + T+GD+ I G R
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRVTDLPPQKRN 88
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRL----SSDIDSKTRKMFVDEVMDLVELEPLTNA 998
G QN H+TVY+++ F LR ++D++ V E++ + LE N
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFG--LREKRVPKDEMDAR-----VRELLRFMRLESYANR 141
Query: 999 MVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 142 FP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 55/254 (21%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV 241
+ ++ VS ++ M LLGP G+GKTT+L +AG G + G +
Sbjct: 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLP 83
Query: 242 P-QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEID 300
P +R + QN F MTV + + F R V E+ R +E
Sbjct: 84 PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPK-----DEMDARVREL--------- 129
Query: 301 AYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA 360
L+ + L+ A+ ++ SGGQ++RV L
Sbjct: 130 --------------------LRFMRLESYANRFP-HEL----SGGQQQRVALARALAPRP 164
Query: 361 KVLLMDEISTGLDSSTTFQICKYM----KQMVHVLEITTI-VSLLQPAPEAYDLFDNIIL 415
+VLL DE +D+ QI + + +Q+ + +T++ V+ Q EA ++ D +++
Sbjct: 165 QVLLFDEPFAAIDT----QIRRELRTFVRQVHDEMGVTSVFVTHDQ--EEALEVADRVLV 218
Query: 416 LSEGQIVYQG-PRE 428
L EG + G P E
Sbjct: 219 LHEGNVEQFGTPEE 232
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 4e-12
Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 898 ALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP-KNQATFARVSGYCEQNDIHSPHV 956
L+G +GAGK+ ++++AG G++ ++G R G+ Q+ PH+
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 957 TVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRL 1016
+VY ++ + LR ++ R V E+ + + + L + LS +R+R+
Sbjct: 86 SVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQRV 135
Query: 1017 TIAVELVANPSIIFMDEPTSGLDAR 1041
+A LV P ++ +DEP S +D +
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 6e-10
Identities = 54/253 (21%), Positives = 100/253 (39%), Gaps = 57/253 (22%)
Query: 201 LLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEM 259
LLGP GAGK+ L +AG + D G+++ G + P +R ++ Q+ F +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDY 319
+V + + G R E RR +E
Sbjct: 86 SVYRNIAY-------GLRNVERVERDRRVREM---------------------------- 110
Query: 320 VLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQ 379
+ LG+ D ++ SGG+++RV LV ++LL+DE + +D T
Sbjct: 111 -AEKLGIAHLLDRKP-ARL----SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 380 ICKYMKQMVHVLEITTI-VSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMG 438
+ + ++ + ++ + V+ EA L D + ++ G+IV +G +++
Sbjct: 165 LMEELRFVQREFDVPILHVTHDL--IEAAMLADEVAVMLNGRIVEKGKLKELFS------ 216
Query: 439 FKCPDRKGVADFL 451
VA+FL
Sbjct: 217 ---AKNGEVAEFL 226
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 1e-11
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 28/170 (16%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L +V+ G ++G SGAGKTT M ++AG + G++ V
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVP 78
Query: 944 GYCEQNDIHS--------PHVTVYESLLFSAWLRLS----SDIDSKTRKMFVDEVMDLVE 991
E I P++T +E++ F L +I + V+EV +++
Sbjct: 79 P--EDRKIGMVFQTWALYPNLTAFENIAFP--LTNMKMSKEEIRKR-----VEEVAKILD 129
Query: 992 LEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
+ + N P LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 130 IHHVLNHF---PR--ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 58/259 (22%), Positives = 101/259 (38%), Gaps = 60/259 (23%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDD----DLKLTGKIKYCGHEF 237
K+ L +V+ ++ +LGP GAGKTT + +AG LD +L ++
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRL--VASNG 73
Query: 238 KEFVP--QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKP 295
K VP R + Q + +T E + F + + EI +R +E
Sbjct: 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSK-----EEIRKRVEEV---- 124
Query: 296 DPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEM 355
K+L + V + R +SG Q++RV
Sbjct: 125 -------------------------AKILDIH-----HVLNHFPRELSGAQQQRVALARA 154
Query: 356 LVGPAKVLLMDEISTGLDS----STTFQICKYMKQMVHVLEITTI-VSLLQPAPEAYDLF 410
LV +LL+DE + LD+ S + K++ L +T + VS + + +
Sbjct: 155 LVKDPSLLLLDEPFSNLDARMRDSARALV----KEVQSRLGVTLLVVSHDP--ADIFAIA 208
Query: 411 DNIILLSEGQIVYQG-PRE 428
D + +L +G++V G P +
Sbjct: 209 DRVGVLVKGKLVQVGKPED 227
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 66/266 (24%), Positives = 111/266 (41%), Gaps = 72/266 (27%)
Query: 849 LPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKT 908
L FQ + F +V++S D + L+DVS PG AL+G SGAGK+
Sbjct: 47 LRFQKGRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKS 94
Query: 909 TLM-------DVLAGRKTGGYTEGDISISGYPKNQATFA---RVSGYCEQ-----NDIHS 953
T++ D+ + G I I G +Q T A G Q ND
Sbjct: 95 TILRLLFRFYDI---------SSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND--- 142
Query: 954 PHVTVYESLLFSAWLRLS-SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE- 1011
T+ +++ + R++ + DEV + + +A++ P +G T+
Sbjct: 143 ---TIADNIRYG---RVTAGN----------DEVEAAAQAAGIHDAIMAFP--EGYRTQV 184
Query: 1012 ----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
+++R+ IA ++ P II +DE TS LD + ++ V RT +
Sbjct: 185 GERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL-AKVCANRTTI 243
Query: 1062 CTIHQPSIDIFEAFDELLLMKRGGQV 1087
H+ S + A D++L++K G V
Sbjct: 244 VVAHRLST-VVNA-DQILVIKDGCIV 267
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 19/109 (17%)
Query: 331 DTMVGDQMRRGV--SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMV 388
T VG+ RG+ SGG+K+RV ++ ++L+DE ++ LD+S I + ++
Sbjct: 181 RTQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC 237
Query: 389 HVLEITTIV-----SLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLE 432
TTIV S + A D I+++ +G IV +G E +L
Sbjct: 238 A--NRTTIVVAHRLSTVVNA-------DQILVIKDGCIVERGRHEALLS 277
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 4e-10
Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 28/164 (17%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR 941
LL + + G +G GK+TLM +A + G+ + T
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGF--------PTQEECRT--- 497
Query: 942 VSGYCEQN-DIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
Y E + D +V + + S I K L+E T+ M+
Sbjct: 498 --VYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDK-----------LIEFG-FTDEMI 542
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
+P + LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 543 AMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 6e-06
Identities = 47/349 (13%), Positives = 102/349 (29%), Gaps = 53/349 (15%)
Query: 95 GMQDRK--------QLRESILKLVEEDNDK--FLRKLRERIDRVGIDIPKIEIR------ 138
G+ +R+ + +++ KLVE+ FL KL + I E R
Sbjct: 259 GLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRA 318
Query: 139 YEHLNIQGEVHIGSRAIPTLPNAVINIAENVLGSLRILPSKKRKIQILKDVSGLVKPSRM 198
+ L G V ++ V+ L + + +I+ + + +
Sbjct: 319 LKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADLI 378
Query: 199 TLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYC---------GHEFKEFVPQRTCAYI 249
+ A T + + L + ++ G F + +
Sbjct: 379 DERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCN 438
Query: 250 SQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAE-----------ISRREKEAGIKPDPE 298
+ L +G + L RY + I+ + + +
Sbjct: 439 CEFSLAYGAKILLNKTQLR---LKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEEC 495
Query: 299 IDAYMKATALAGQKTSLATDYVL------------KLLGLDICADTMVGDQMRRGVSGGQ 346
Y++ + D+V KL+ + + +SGG
Sbjct: 496 RTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMI--AMPISALSGGW 553
Query: 347 KKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITT 395
K ++ ++ A +LL+DE + LD+ + Y+ +
Sbjct: 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITIS 602
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 1e-05
Identities = 42/250 (16%), Positives = 77/250 (30%), Gaps = 63/250 (25%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIK---------YCG 234
+ D++ S ++GP GAGK+TL+ L G+L +G++
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHENCRIAYIKQ 743
Query: 235 HEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLG-------------VGTRYEML 281
H F F RETMD + R + GT +
Sbjct: 744 HAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIA 803
Query: 282 AEISRREKEAGIKPDPEIDAYMKATALAGQKTSLAT------------DYVLKLLGLDIC 329
SRR+ + + + + + + + + K++
Sbjct: 804 GIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDM 863
Query: 330 ADTMVGDQMR--------------------------RGVSGGQKKRVTTGEMLVGPAKVL 363
+ + Q R RG+SGGQK ++ ++
Sbjct: 864 KEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLI 923
Query: 364 LMDEISTGLD 373
++DE + LD
Sbjct: 924 VLDEPTNYLD 933
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 36/226 (15%)
Query: 877 EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPK 934
+ D +L +++ + G + ++G SG+GK+TL ++ Y G + I G+
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDL 73
Query: 935 NQATFA---RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMD--- 988
A R G Q +++L + + +I M V++V+
Sbjct: 74 ALADPNWLRRQVGVVLQ-----------DNVLLNRSII--DNISLANPGMSVEKVIYAAK 120
Query: 989 -------LVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
+ EL N +VG G GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 121 LAGAHDFISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087
+ ++MR + GRTV+ H+ S + A D +++M++G V
Sbjct: 180 SEHVIMRNMHKIC-KGRTVIIIAHRLST-VKNA-DRIIVMEKGKIV 222
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 59.0 bits (144), Expect = 2e-09
Identities = 56/253 (22%), Positives = 106/253 (41%), Gaps = 61/253 (24%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
IL +++ +K + ++G G+GK+TL L + G++ GH+ P
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPEN--GQVLIDGHDLALADPN 79
Query: 244 ---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEID 300
R + Q+++ ++ + + + P ++
Sbjct: 80 WLRRQVGVVLQDNVLLNR-SIIDNISLA-------------------------NPGMSVE 113
Query: 301 AYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGV--SGGQKKRVTTGEMLV 357
+ A LAG A D++ +L G + T+VG+ +G SGGQ++R+ LV
Sbjct: 114 KVIYAAKLAG-----AHDFISELREGYN----TIVGE---QGAGLSGGQRQRIAIARALV 161
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV-----SLLQPAPEAYDLFDN 412
K+L+ DE ++ LD + I + M ++ T I+ S ++ A D
Sbjct: 162 NNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLSTVKNA-------DR 212
Query: 413 IILLSEGQIVYQG 425
II++ +G+IV QG
Sbjct: 213 IIVMEKGKIVEQG 225
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 60/274 (21%), Positives = 106/274 (38%), Gaps = 69/274 (25%)
Query: 167 ENVLGSLRILPSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKL 226
N SL +LKD++ ++ ++ + G GAGKT+LLM + G+L+
Sbjct: 35 SNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PS 91
Query: 227 TGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISR 286
GKIK+ G F Q ++I T++E + +G Y+
Sbjct: 92 EGKIKHSGR--ISFCSQ--NSWI-MP------GTIKENI--------IGVSYD------- 125
Query: 287 REKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLL-GLDICADTMVGDQMRRGV--S 343
+ Y + L D + D + ++G+ G+ S
Sbjct: 126 EYR------------YRSVI----KACQLEED--ISKFAEKD---NIVLGE---GGITLS 161
Query: 344 GGQKKRVTTGEMLVGPAKVLLMDEISTGLDSST---TFQ--ICKYMKQMVHVLEITTIVS 398
GGQ+ R++ + A + L+D LD T F+ +CK M +L +T+ +
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSKME 220
Query: 399 LLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLE 432
L+ A D I++L EG + G ++
Sbjct: 221 HLKKA-------DKILILHEGSSYFYGTFSELQN 247
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 49/223 (21%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKNQATFAR 941
L+D++ G L A+ G +GAGKT+L+ ++ G + EG I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 942 VSGYCEQNDIHSPHVTVYESLLFSAWLR---LSSDIDSKTRKMFVDEVMDLVELEP---- 994
+S +C Q S + ++ + D V+ +LE
Sbjct: 101 IS-FCSQ-----------NSWIMPGTIKENIIGVSYDEY----RYRSVIKACQLEEDISK 144
Query: 995 -----LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
++G G+ LS QR R+++A + + + +D P LD + +
Sbjct: 145 FAEKDNI--VLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 201
Query: 1050 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
+ +T + + ++ + D++L++ G + G
Sbjct: 202 CVCKLMANKTRILVTSK--MEHLKKADKILILH-EGSSYFYGT 241
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 5e-10
Identities = 59/253 (23%), Positives = 98/253 (38%), Gaps = 60/253 (23%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
QIL+D+S +P+ + GP G GK+T+ L G+I G +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 244 ---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEID 300
++SQ+ T+RE + Y G++ D +
Sbjct: 73 NWRSQIGFVSQDSAIMAG-TIRENL-----------TY-------------GLEGDYTDE 107
Query: 301 AYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGV--SGGQKKRVTTGEMLV 357
+ LA A +V + L+ T VG+ RGV SGGQ++R+ +
Sbjct: 108 DLWQVLDLAF-----ARSFVENMPDQLN----TEVGE---RGVKISGGQRQRLAIARAFL 155
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV-----SLLQPAPEAYDLFDN 412
K+L++DE + LDS + + K + ++ TT+V S + A D
Sbjct: 156 RNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLSTIVDA-------DK 206
Query: 413 IILLSEGQIVYQG 425
I + +GQI G
Sbjct: 207 IYFIEKGQITGSG 219
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 2e-09
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 43/227 (18%)
Query: 878 EDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPKN 935
+D Q+LRD+S +P + A G SG GK+T+ +L R Y T G+I+I G P +
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RF---YQPTAGEITIDGQPID 67
Query: 936 QATFA---RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVEL 992
+ G+ Q +S + + +R ++ + DE DL ++
Sbjct: 68 NISLENWRSQIGFVSQ-----------DSAIMAGTIR--ENLTYGLEGDYTDE--DLWQV 112
Query: 993 EPLTNAM---VGLPGVDGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGL 1038
L A +P D L+TE QR+RL IA + NP I+ +DE T+ L
Sbjct: 113 LDLAFARSFVENMP--DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASL 170
Query: 1039 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085
D+ + ++V + + +++ GRT + H+ S I +A D++ +++G
Sbjct: 171 DSESESMVQKAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKGQ 214
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 8e-10
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 31/171 (18%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L D+S PG + ++G SG GKTTL+ LAG + G+IS+SG +
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSG--------KTIF 69
Query: 944 GYC-----EQNDIHS--------PHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV 990
+ + PH+TVY ++ + + R ++ +++L
Sbjct: 70 SKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR---IEAMLELT 126
Query: 991 ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
+ L P LS Q++R +A L +P +I +DEP S LD +
Sbjct: 127 GISELAGRY---P--HELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 57/252 (22%), Positives = 96/252 (38%), Gaps = 51/252 (20%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHE---FKEF 240
+L D+S + P + ++G G GKTTLL LAG D +G+I G
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTN 74
Query: 241 VP--QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPE 298
+P +R Y+ Q + F +TV + + T A+ +R +
Sbjct: 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRT-----AQERQRIEAM------- 122
Query: 299 IDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVG 358
L+L G+ A ++ SGGQ++R L
Sbjct: 123 ----------------------LELTGISELAGRYP-HEL----SGGQQQRAALARALAP 155
Query: 359 PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTI-VSLLQPAPEAYDLFDNIILLS 417
+++L+DE + LD QI + M + + + VS + EA D I ++
Sbjct: 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR--EEALQYADRIAVMK 213
Query: 418 EGQIVYQG-PRE 428
+G+I+ P E
Sbjct: 214 QGRILQTASPHE 225
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 58/265 (21%), Positives = 104/265 (39%), Gaps = 72/265 (27%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
+LKD++ ++ ++ + G GAGKT+LLM + G+L+ GKIK+ G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 245 TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMK 304
++ SQ T++E + F G Y+ + Y
Sbjct: 70 RISFCSQFSWIMP-GTIKENIIF-------GVSYD-------EYR------------YRS 102
Query: 305 ATALAGQKTSLATDYVLKLL-GLDICADTMVGDQMRRGV--SGGQKKRVTTGEMLVGPAK 361
+ L D + D + ++G+ G+ SGGQ+ R++ + A
Sbjct: 103 VI----KACQLEED--ISKFAEKD---NIVLGE---GGITLSGGQRARISLARAVYKDAD 150
Query: 362 VLLMDEISTGLDSST---TFQ--ICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416
+ L+D LD T F+ +CK M +L +T+ + L+ A D I++L
Sbjct: 151 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSKMEHLKKA-------DKILIL 202
Query: 417 SEGQIVYQGP----REKVLEFFEYM 437
EG + G + +F +
Sbjct: 203 HEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 4e-07
Identities = 47/229 (20%), Positives = 91/229 (39%), Gaps = 48/229 (20%)
Query: 877 EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPK 934
EE +L+D++ G L A+ G +GAGKT+L+ ++ G +EG I SG
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP----SEGKIKHSG--- 69
Query: 935 NQATFARVSGYCEQNDIHSP---HVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVE 991
R+S +C Q T+ E+++F + V+ +
Sbjct: 70 ------RIS-FCSQ----FSWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQ 108
Query: 992 LEP---------LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
LE ++G G+ LS QR R+++A + + + +D P LD
Sbjct: 109 LEEDISKFAEKDNI--VLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165
Query: 1043 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
+ + + +T + + ++ + D++L++ G + G
Sbjct: 166 EKEIFESCVCKLMANKTRILVTSK--MEHLKKADKILILH-EGSSYFYG 211
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 1e-09
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 14/159 (8%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ-ATFARV 942
L ++S G ++G +GAGKT ++++AG G I + G +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHD 73
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGL 1002
+ QN PH+ V ++L F +R+ I R V + +++E L +
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG--MRMK-KIKDPKR---VLDTARDLKIEHLLDRNP-- 125
Query: 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 126 ---LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-04
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 46/168 (27%)
Query: 201 LLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEM 259
+LGP GAGKT L +AG D +G+I G + + P + A++ QN F M
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM 87
Query: 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDY 319
V++ ++F R + + +R +
Sbjct: 88 NVKKNLEFGMRMKKI--------KDPKRVLDT---------------------------- 111
Query: 320 VLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDE 367
+ L ++ D + SGG+++RV LV K+LL+DE
Sbjct: 112 -ARDLKIEHLLDRNP-LTL----SGGEQQRVALARALVTNPKILLLDE 153
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-09
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 52/172 (30%)
Query: 899 LMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHS----- 953
L+G SG+GK+TL+ +AG T G I V ++
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDE--------KDV------TELPPKDRNV 77
Query: 954 ----------PHVTVYESLLFSAWLRLS----SDIDSKTRKMFVDEVMDLVELEPLTNAM 999
PH+TVY+++ F L L +ID K V EV ++ ++ L N
Sbjct: 78 GLVFQNWALYPHMTVYKNIAFP--LELRKAPREEIDKK-----VREVAKMLHIDKLLNRY 130
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1049
P LS Q++R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 131 ---PW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 47/190 (24%), Positives = 73/190 (38%), Gaps = 49/190 (25%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLT-GKIKYCGHEFKEF 240
L +++ +K LLGP G+GK+TLL +AG + T GKI + + E
Sbjct: 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYK---PTSGKIYFDEKDVTEL 70
Query: 241 VPQ-RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
P+ R + QN + MTV + + F EI ++ +E
Sbjct: 71 PPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPR-----EEIDKKVREVA------- 118
Query: 300 DAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR--RGVSGGQKKRVTTGEMLV 357
K+L +D + R +SGGQ++RV LV
Sbjct: 119 ----------------------KMLHIDKLLN-------RYPWQLSGGQQQRVAIARALV 149
Query: 358 GPAKVLLMDE 367
+VLL+DE
Sbjct: 150 KEPEVLLLDE 159
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 4e-09
Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 52/172 (30%)
Query: 899 LMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHS----- 953
L+G SG GKTT + ++AG + TEG I V +
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGD--------RDV------TYLPPKDRNI 85
Query: 954 ----------PHVTVYESLLFSAWLRLS----SDIDSKTRKMFVDEVMDLVELEPLTNAM 999
PH+TVYE++ F L++ +ID + V +L+++E L N
Sbjct: 86 SMVFQSYAVWPHMTVYENIAFP--LKIKKFPKDEIDKR-----VRWAAELLQIEELLNRY 138
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1049
P LS QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 139 ---PA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 5e-04
Identities = 45/190 (23%), Positives = 73/190 (38%), Gaps = 49/190 (25%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLT-GKIKYCGHEFKEF 240
+ ++ +K +LLGP G GKTT L +AG L++ T G+I + +
Sbjct: 23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEE---PTEGRIYFGDRDVTYL 78
Query: 241 VPQ-RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
P+ R + + Q+ + MTV E + F + EI +R + A
Sbjct: 79 PPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK-----DEIDKRVRWAA------- 126
Query: 300 DAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR--RGVSGGQKKRVTTGEMLV 357
+LL ++ + R +SGGQ++RV +V
Sbjct: 127 ----------------------ELLQIEELLN-------RYPAQLSGGQRQRVAVARAIV 157
Query: 358 GPAKVLLMDE 367
VLLMDE
Sbjct: 158 VEPDVLLMDE 167
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 5e-09
Identities = 56/254 (22%), Positives = 102/254 (40%), Gaps = 58/254 (22%)
Query: 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP 242
+Q+L+ ++ + P ++T L+GP G+GK+T+ AL L GK+ G ++
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQNLYQPTG--GKVLLDGEPLVQYDH 88
Query: 243 Q---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
A + Q L FG + RE + Y G+ P +
Sbjct: 89 HYLHTQVAAVGQEPLLFG-RSFRENI-----------AY-------------GLTRTPTM 123
Query: 300 DAYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGV--SGGQKKRVTTGEML 356
+ +G A D++ G D T VG+ G SGGQ++ V L
Sbjct: 124 EEITAVAMESG-----AHDFISGFPQGYD----TEVGE---TGNQLSGGQRQAVALARAL 171
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV-----SLLQPAPEAYDLFD 411
+ ++L++D ++ LD+ ++ + + + T ++ SL + A
Sbjct: 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA-------H 224
Query: 412 NIILLSEGQIVYQG 425
+I+ L EG + QG
Sbjct: 225 HILFLKEGSVCEQG 238
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 48/207 (23%), Positives = 78/207 (37%), Gaps = 47/207 (22%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYP---KNQ 936
Q+L+ ++ PG +TAL+G +G+GK+T+ +L Y T G + + G P +
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NL---YQPTGGKVLLDGEPLVQYDH 88
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLR---LSSDIDSKTRKMFVDEVMDLVELE 993
Q E LLF R + T +E+ +
Sbjct: 89 HYLHTQVAAVGQ-----------EPLLFGRSFRENIAYGLTRTPTM----EEITAVAM-- 131
Query: 994 PLTNA---MVGLPGVDGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+ A + G P G TE QR+ + +A L+ P ++ +D TS LD
Sbjct: 132 -ESGAHDFISGFP--QGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
Query: 1040 ARAAAIVMRTV-RNTVDTGRTVVCTIH 1065
A V R + + RTV+
Sbjct: 189 AGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 7e-09
Identities = 61/288 (21%), Positives = 106/288 (36%), Gaps = 80/288 (27%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
L ++ + + ++G G GK++LL AL ++D K+ G + G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---------- 66
Query: 245 TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMK 304
+ AY+ Q ++RE + F G + E Y
Sbjct: 67 SVAYVPQQAWIQN-DSLRENILF-------GCQLE-------EPY------------YRS 99
Query: 305 ATALAGQKTSLATDYVLKLL-GLDICADTMVGDQMRRGV--SGGQKKRVTTGEMLVGPAK 361
Q +L D L++L D T +G+ +GV SGGQK+RV+ + A
Sbjct: 100 VI----QACALLPD--LEILPSGD---RTEIGE---KGVNLSGGQKQRVSLARAVYSNAD 147
Query: 362 VLLMDEISTGLDSST---TFQIC----KYMKQMVHVLEITTIVSLLQPAPEAYDLFDNII 414
+ L D+ + +D+ F+ +K +L +T +S L D II
Sbjct: 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL-VTHSMSYLPQV-------DVII 199
Query: 415 LLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVTSKKDQEQ 462
++S G+I G +++L A+FL+ S
Sbjct: 200 VMSGGKISEMGSYQELLA----------RDGAFAEFLRTYASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 9e-07
Identities = 46/217 (21%), Positives = 84/217 (38%), Gaps = 49/217 (22%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKNQATFAR 941
L ++ G L A++G G GK++L+ L K EG ++I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK----VEGHVAIKG---------S 67
Query: 942 VSGYCEQNDIHSP---HVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP---- 994
V+ Y Q + ++ E++LF + + + V+ L P
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILFG----------CQLEEPYYRSVIQACALLPDLEI 112
Query: 995 -----LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
T +G GV+ LS Q++R+++A + +N I D+P S +DA +
Sbjct: 113 LPSGDRT--EIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEN 169
Query: 1050 V--RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084
V + +T + H + D +++M G
Sbjct: 170 VIGPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 9e-09
Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 52/172 (30%)
Query: 899 LMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHS----- 953
L+G SG GKTT + +LAG T G+I V NDI
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDD--------VLV------NDIPPKYREV 77
Query: 954 ----------PHVTVYESLLFSAWLRLS----SDIDSKTRKMFVDEVMDLVELEPLTNAM 999
PH+TV+E++ F LR +++ + V E+ + ++ L +
Sbjct: 78 GMVFQNYALYPHMTVFENIAFP--LRARRISKDEVEKR-----VVEIARKLLIDNLLDR- 129
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1049
P LS Q++R+ +A LV P ++ DEP S LDA R MR
Sbjct: 130 --KPT--QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 54/193 (27%), Positives = 72/193 (37%), Gaps = 55/193 (28%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLT-GKIKYCGHEFKEF 240
K++ + VS VK LLGP G GKTT L+ LAG + T G+I + +
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYK---PTSGEIYFDDVLVNDI 70
Query: 241 VP-QRTCAYISQN-DL--HFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
P R + QN L H MTV E + F R + E+ +R E
Sbjct: 71 PPKYREVGMVFQNYALYPH---MTVFENIAFPLRARRISK-----DEVEKRVVEIA---- 118
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR--RGVSGGQKKRVTTGE 354
+ L +D D R +SGGQ++RV
Sbjct: 119 -------------------------RKLLIDNLLD-------RKPTQLSGGQQQRVALAR 146
Query: 355 MLVGPAKVLLMDE 367
LV KVLL DE
Sbjct: 147 ALVKQPKVLLFDE 159
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 1e-08
Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 46/172 (26%)
Query: 899 LMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHS----- 953
L+G SG GKTT + ++AG + + G I I V+ + +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGD--------KLVADPEKGIFVPPKDRDI 83
Query: 954 ----------PHVTVYESLLFSAWLRLS----SDIDSKTRKMFVDEVMDLVELEPLTNAM 999
PH+TVY+++ F L+L +ID + V EV +L+ L L N
Sbjct: 84 AMVFQSYALYPHMTVYDNIAFP--LKLRKVPRQEIDQR-----VREVAELLGLTELLNRK 136
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1049
P LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 137 ---PR--ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 55/196 (28%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDD----DLKLTGKIKYCGHEF 237
++ ++++S VK +LLGP G GKTT L +AG L++ + + K+ +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVADPEKG 73
Query: 238 KEFVPQ-RTCAYISQN-DL--HFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGI 293
P+ R A + Q+ L H MTV + + F + V
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPH---MTVYDNIAFPLKLRKV------------------- 111
Query: 294 KPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR--RGVSGGQKKRVT 351
P EID ++ A +LLGL + R R +SGGQ++RV
Sbjct: 112 -PRQEIDQRVREVA--------------ELLGLTELLN-------RKPRELSGGQRQRVA 149
Query: 352 TGEMLVGPAKVLLMDE 367
G +V +V LMDE
Sbjct: 150 LGRAIVRKPQVFLMDE 165
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 59/244 (24%), Positives = 110/244 (45%), Gaps = 39/244 (15%)
Query: 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVL 914
++ F VN+S ++ + L+ ++ G AL+G +G+GK+T+ +L
Sbjct: 17 NIEFSDVNFSYP----------KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
Query: 915 AGRKTGGY-TEGDISISGYPKNQATFA---RVSGYCEQ-----NDIHSPHVTVYESLLFS 965
R Y EGDI I G N+ + G Q N+ T+ ++L+
Sbjct: 67 Y-RF---YDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE------TIKYNILYG 116
Query: 966 AWLRLSSDIDSKTRKMFVDE-VMDLVELEPLT-NAMVGLPGVDGLSTEQRKRLTIAVELV 1023
++ T+ + + + L P + +VG G+ LS +R+R+ IA L+
Sbjct: 117 KLDATDEEVIKATKSAQLYDFIEAL----PKKWDTIVGNKGMK-LSGGERQRIAIARCLL 171
Query: 1024 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1083
+P I+ DE TS LD++ + + V + + RT++ H+ S I A + ++L+ +
Sbjct: 172 KDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLST-ISSA-ESIILLNK 228
Query: 1084 GGQV 1087
G V
Sbjct: 229 GKIV 232
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 61/268 (22%), Positives = 109/268 (40%), Gaps = 78/268 (29%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF--- 240
+ LK ++ + L+G G+GK+T+ L D G IK G ++
Sbjct: 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD----AEGDIKIGGKNVNKYNRN 89
Query: 241 --------VPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAG 292
VPQ T + N+ T++ + Y G
Sbjct: 90 SIRSIIGIVPQDTILF---NE------TIKYNI-----------LY-------------G 116
Query: 293 IKPDPEIDAYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGV--SGGQKKR 349
K D + +KAT A D++ L D T+VG+ +G+ SGG+++R
Sbjct: 117 -KLDATDEEVIKATKSAQ-----LYDFIEALPKKWD----TIVGN---KGMKLSGGERQR 163
Query: 350 VTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV-----SLLQPAP 404
+ L+ K+++ DE ++ LDS T + K ++ + T I+ S + A
Sbjct: 164 IAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLSTISSA- 220
Query: 405 EAYDLFDNIILLSEGQIVYQGPREKVLE 432
++IILL++G+IV +G + +L+
Sbjct: 221 ------ESIILLNKGKIVEKGTHKDLLK 242
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 2e-08
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV 241
I +K + V ++ L+G GAGKTT L A+AG + GKI + G +
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKP 74
Query: 242 PQRTC----AYISQNDLHFGEMTVRE 263
A + + F E+TV E
Sbjct: 75 AHVINRMGIALVPEGRRIFPELTVYE 100
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 26/192 (13%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP-KNQA 937
+ ++ + G + L+G +GAGKTT + +AG +G I +G N+
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDITNKP 74
Query: 938 TFARVS-GYCEQNDIHSP-------HVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDL 989
G P +TVYE+L+ A+ R D + K ++ + L
Sbjct: 75 AHVINRMGIA-----LVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSL 125
Query: 990 V-ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
L+ + G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 126 FPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE 180
Query: 1049 TVRNTVDTGRTV 1060
++ G T+
Sbjct: 181 VIQKINQEGTTI 192
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-08
Identities = 90/453 (19%), Positives = 151/453 (33%), Gaps = 89/453 (19%)
Query: 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP 242
+QILK ++ VK + L+G G GK+T + L +L D L G + G + +
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTV-QLMQRLYDPLD--GMVSIDGQDIRTINV 459
Query: 243 Q---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
+ +SQ + F T+ E + G +++ E
Sbjct: 460 RYLREIIGVVSQEPVLFAT-TIAENI-----RYG-------REDVTMDE----------- 495
Query: 300 DAYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGV--SGGQKKRVTTGEML 356
++ K + A D+++KL D T+VG+ RG SGGQK+R+ L
Sbjct: 496 ---IEKAV----KEANAYDFIMKLPHQFD----TLVGE---RGAQLSGGQKQRIAIARAL 541
Query: 357 VGPAKVLLMDEISTGLDSST--TFQ--ICKYMKQMVHVLEITTIV-----SLLQPAPEAY 407
V K+LL+DE ++ LD+ + Q + K + TTIV S ++ A
Sbjct: 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGR------TTIVIAHRLSTVRNA---- 591
Query: 408 DLFDNIILLSEGQIVYQGPREKVLE---FFEYMGFKCPDRKGVADFLQEVTSKKDQEQYW 464
D I G IV QG ++++ + + + E KD+
Sbjct: 592 ---DVIAGFDGGVIVEQGNHDELMREKGIYFKL-VMTQTAGNEIELGNEACKSKDEIDNL 647
Query: 465 FRKDQPYRYISVSDFVQGFSSFHVGQQLANDLAVPYDKSRTHPAALVKNKYGISNMDLFR 524
+ + S Q PA+ + +
Sbjct: 648 DMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASF---------WRILK 698
Query: 525 ACFGREWLLMKRNSFVYIFKTSQITIMSLI---ALTVFFRTEMPVGNVADGAKFYGALFF 581
EW F I S+I + VF P + + LF
Sbjct: 699 LN-STEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGG-PPETQRQNSNLFSLLFL 756
Query: 582 SL--INLMFNGLAELAFTVFRLPVFFKQRDHLF 612
L I+ + L F + + R +F
Sbjct: 757 ILGIISFITFFLQGFTFGKAGEILTKRLRYMVF 789
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 6e-08
Identities = 55/252 (21%), Positives = 87/252 (34%), Gaps = 91/252 (36%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPKNQATF 939
Q+L+ ++ + G AL+G SG GK+T + ++ Y +G +SI G
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM----QRLYDPLDGMVSIDGQ------- 452
Query: 940 ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP----- 994
DI + + +LR E++ +V EP
Sbjct: 453 ----------DIRT---------INVRYLR---------------EIIGVVSQEPVLFAT 478
Query: 995 --LTNAMVGLPGV----------------------DGLSTE-----------QRKRLTIA 1019
N G V T Q++R+ IA
Sbjct: 479 TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIA 538
Query: 1020 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1079
LV NP I+ +DE TS LD + A+V + GRT + H+ S + A D +
Sbjct: 539 RALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLST-VRNA-DVIA 595
Query: 1080 LMKRGGQVIYAG 1091
GG ++ G
Sbjct: 596 GFD-GGVIVEQG 606
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-06
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 60/213 (28%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPKNQATF 939
+L+ +S + G AL+G SG GK+T++ +L R Y G + + G
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RF---YDPMAGSVFLDGK------- 1095
Query: 940 ARVSGYCEQNDIHSPHVTVY---------ESLLFSAWLR----LSSDIDSKTRKMFVDEV 986
+I +V E +LF + + + +E+
Sbjct: 1096 ----------EIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY----EEI 1141
Query: 987 MDLVELEPLTNAM---VGLPGVDGLSTE-----------QRKRLTIAVELVANPSIIFMD 1032
+ + N LP D +T Q++R+ IA LV P I+ +D
Sbjct: 1142 VRAAK---EANIHQFIDSLP--DKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLD 1196
Query: 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
E TS LD + +V + + GRT + H
Sbjct: 1197 EATSALDTESEKVVQEAL-DKAREGRTCIVIAH 1228
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 8e-06
Identities = 64/258 (24%), Positives = 101/258 (39%), Gaps = 67/258 (25%)
Query: 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP 242
I +L+ +S VK + L+G G GK+T+ + L + D + G + G E K+
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTV-VQLLERFYDPMA--GSVFLDGKEIKQLNV 1102
Query: 243 Q---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
Q +SQ + F + ++ E + G +R EI R KEA I
Sbjct: 1103 QWLRAQLGIVSQEPILF-DCSIAENI-----AYGDNSRVVSYEEIVRAAKEANI------ 1150
Query: 300 DAYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGV--SGGQKKRVTTGEML 356
++ L + T VGD +G SGGQK+R+ L
Sbjct: 1151 -----------------HQFIDSLPDKYN----TRVGD---KGTQLSGGQKQRIAIARAL 1186
Query: 357 VGPAKVLLMDEISTGLD--SSTTFQ--ICKYMKQMVHVLEITTIV-----SLLQPAPEAY 407
V +LL+DE ++ LD S Q + K + T IV S +Q A
Sbjct: 1187 VRQPHILLLDEATSALDTESEKVVQEALDKAREG------RTCIVIAHRLSTIQNA---- 1236
Query: 408 DLFDNIILLSEGQIVYQG 425
D I+++ G++ G
Sbjct: 1237 ---DLIVVIQNGKVKEHG 1251
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 36/198 (18%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L ++S PG L+G +G+GK+TL+ TEG+I I G
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV----------- 82
Query: 944 GYCEQNDIHS-------PHVTVY--ESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
S V + +FS R + D ++ + +V D V L
Sbjct: 83 ------SWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRS 136
Query: 995 LTNAMVG------LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
+ G + G LS ++ + +A +++ I+ +DEP++ LD I+ R
Sbjct: 137 VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRR 196
Query: 1049 TVRNTVDTGRTVVCTIHQ 1066
T++ TV+ +
Sbjct: 197 TLKQAF-ADCTVILCEAR 213
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-07
Identities = 45/193 (23%), Positives = 77/193 (39%), Gaps = 58/193 (30%)
Query: 877 EEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPK 934
+ LR+++ G AL+G SG+GK+T+ ++ T Y EG I + G+
Sbjct: 352 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI----TRFYDIDEGHILMDGHDL 407
Query: 935 NQAT-------FARVSGYCEQ-----NDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMF 982
+ T A VS Q ND TV ++ + + + +R
Sbjct: 408 REYTLASLRNQVALVS----QNVHLFND------TVANNIAY-------ARTEEYSR--- 447
Query: 983 VDEVMDLVELEPLTNAM---VGLPGVDGLSTE-----------QRKRLTIAVELVANPSI 1028
+++ + + AM + +GL T QR+R+ IA L+ + I
Sbjct: 448 -EQIEEAAR---MAYAMDFINKMD--NGLDTIIGENGVLLSGGQRQRIAIARALLRDSPI 501
Query: 1029 IFMDEPTSGLDAR 1041
+ +DE TS LD
Sbjct: 502 LILDEATSALDTE 514
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 61/256 (23%), Positives = 112/256 (43%), Gaps = 60/256 (23%)
Query: 181 RKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEF 240
R++ L++++ + + L+G G+GK+T+ + D D G I GH+ +E+
Sbjct: 354 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREY 410
Query: 241 VPQ---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
A +SQN F + TV + Y E SR + E
Sbjct: 411 TLASLRNQVALVSQNVHLFND-TVANNI-----------AYARTEEYSREQIEE------ 452
Query: 298 EIDAYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGV--SGGQKKRVTTGE 354
A +A A D++ K+ GLD T++G+ GV SGGQ++R+
Sbjct: 453 -------AARMAY-----AMDFINKMDNGLD----TIIGE---NGVLLSGGQRQRIAIAR 493
Query: 355 MLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV-----SLLQPAPEAYDL 409
L+ + +L++DE ++ LD+ + I + ++ T++V S ++ A
Sbjct: 494 ALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIEQA------ 545
Query: 410 FDNIILLSEGQIVYQG 425
D I+++ +G IV +G
Sbjct: 546 -DEIVVVEDGIIVERG 560
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 16/191 (8%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP-----KN 935
L++L+ ++ R G + ++G SG+GK+T + L + + EG+I I G N
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTN 94
Query: 936 QATFARVSGYCEQNDIHSPHVTVYESLLFS-AWLRLSSDIDSKTRKMFVDEVMDLVELEP 994
G Q PH+TV ++ + +R ++ + M E++D V L+
Sbjct: 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM---ELLDKVGLKD 151
Query: 995 LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
+A P LS Q +R+ IA L P I+ DEPTS LD V+ ++
Sbjct: 152 KAHAY---PD--SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206
Query: 1055 DTGRTVVCTIH 1065
+ G T+V H
Sbjct: 207 NEGMTMVVVTH 217
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 20/164 (12%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG-----YPKNQAT 938
L +VS G + ++G SGAGK+TL+ + + TEG + + G +++ T
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELT 101
Query: 939 FARVS-GYCEQ--NDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPL 995
AR G Q N + S TV+ ++ L L + K V E++ LV L
Sbjct: 102 KARRQIGMIFQHFNLLSS--RTVFGNVALP--LELD-NTPKDEVKRRVTELLSLVGLGDK 156
Query: 996 TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
++ P LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 157 HDSY---P--SNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV----- 397
SGGQK+RV L KVLL D+ ++ LD +TT I + +K + L +T ++
Sbjct: 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM 224
Query: 398 SLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFF 434
+++ + D + ++S G+++ Q V E F
Sbjct: 225 DVVK------RICDCVAVISNGELIEQDT---VSEVF 252
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 6e-07
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 36/175 (20%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGYPKNQAT--- 938
L VS G AL+G SG+GK+T+ ++ T Y G I + G+
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLF----TRFYDVDSGSICLDGHDVRDYKLTN 414
Query: 939 ----FARVSGYCEQ-----NDIHSPHVTVYESLLFSAWLRLS-SDIDSKTRKMFVDE-VM 987
FA VS Q ND T+ ++ ++A + I+ R+ E +
Sbjct: 415 LRRHFALVS----QNVHLFND------TIANNIAYAAEGEYTREQIEQAARQAHAMEFIE 464
Query: 988 DLVELEPL-TNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
++ P + ++G G LS QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 465 NM----PQGLDTVIGENGT-SLSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 57/253 (22%), Positives = 104/253 (41%), Gaps = 60/253 (23%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
L VS + + L+G G+GK+T+ D D +G I GH+ +++
Sbjct: 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLT 413
Query: 244 ---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEID 300
R A +SQN F + T+ + Y + + +
Sbjct: 414 NLRRHFALVSQNVHLFND-TIANNI-----------AY-------------AAEGEYTRE 448
Query: 301 AYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGV--SGGQKKRVTTGEMLV 357
+A A A +++ + GLD T++G+ G SGGQ++RV L+
Sbjct: 449 QIEQAARQAH-----AMEFIENMPQGLD----TVIGE---NGTSLSGGQRQRVAIARALL 496
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV-----SLLQPAPEAYDLFDN 412
A VL++DE ++ LD+ + I + ++ T +V S ++ A D
Sbjct: 497 RDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHRLSTIEQA-------DE 547
Query: 413 IILLSEGQIVYQG 425
I+++ EG+I+ +G
Sbjct: 548 ILVVDEGEIIERG 560
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 52/192 (27%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT 938
+ + +D++ G +G SG GK+TL+ ++AG +T T GD+ I
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGE------- 64
Query: 939 FARVSGYCEQNDIHS---------------PHVTVYESLLFSAWLRLS----SDIDSKTR 979
R+ ND PH++V E++ F L+L+ I+ +
Sbjct: 65 -KRM------NDTPPAERGVGMVFQSYALYPHLSVAENMSFG--LKLAGAKKEVINQR-- 113
Query: 980 KMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
V++V ++++L L + P LS QR+R+ I LVA PS+ +DEP S LD
Sbjct: 114 ---VNQVAEVLQLAHLLDR---KPK--ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Query: 1040 A--RAAAIVMRT 1049
A R MR
Sbjct: 166 AALRVQ---MRI 174
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 1008 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 1062 CTIHQPSIDIFEAFDELLLMKRGGQV 1087
H ++ +A D ++ +
Sbjct: 309 LVSHDE--ELKDAADHVIRISLENGS 332
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 9e-06
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 27/183 (14%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISGY------P 933
+L+ V+ V G + ALMG +GAGK+TL +LAG Y G+I + G P
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENILELSP 74
Query: 934 KNQA------TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVM 987
+A F Q + P VT+ L + +L ++ V + +
Sbjct: 75 DERARKGLFLAF--------QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKAL 126
Query: 988 DLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
+L++ + + + +G S ++KR I LV P+ +DE SGLD A +V
Sbjct: 127 ELLDWDE---SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVA 183
Query: 1048 RTV 1050
R V
Sbjct: 184 RGV 186
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 38/208 (18%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP-KNQATF 939
++L+ VS R G + +++G SG+GK+T + + + +EG I ++G
Sbjct: 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDK 76
Query: 940 ARVSGYCEQNDIHS---------------PHVTVYESLLFS-AWLRLSSDIDSKTRKMFV 983
++N + H+TV E+++ + + ++
Sbjct: 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL------GLSKHDAR 130
Query: 984 DEVMDLVELEPLTNAMVGLPG-VDG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037
+ + + VG+ G LS Q++R++IA L P ++ DEPTS
Sbjct: 131 ERALKYLA-------KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183
Query: 1038 LDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
LD V+R ++ + G+T+V H
Sbjct: 184 LDPELVGEVLRIMQQLAEEGKTMVVVTH 211
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 5e-05
Identities = 58/270 (21%), Positives = 103/270 (38%), Gaps = 85/270 (31%)
Query: 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKL--------TGKI 230
+ ILKD++ ++ +G G GK+TL + L +G+I
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTL-----------INLIPRFYDVTSGQI 398
Query: 231 KYCGHEFKEFVPQRTCAYISQNDL--HFGEMTVRETMDFSGRCLGVGT-----RYEMLAE 283
GH K+ L G + ++ + FS T
Sbjct: 399 LIDGHNIKD---------FLTGSLRNQIG-LVQQDNILFS------DTVKENILL----- 437
Query: 284 ISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGV 342
G +P + ++A +A A D+++ L G D T VG+ RGV
Sbjct: 438 --------G-RPTATDEEVVEAAKMAN-----AHDFIMNLPQGYD----TEVGE---RGV 476
Query: 343 --SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIV--- 397
SGGQK+R++ + + +L++DE ++ LD + I + + + + TT++
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAH 534
Query: 398 --SLLQPAPEAYDLFDNIILLSEGQIVYQG 425
S + A D I+++ G IV G
Sbjct: 535 RLSTITHA-------DKIVVIENGHIVETG 557
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 7e-04
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 999 MVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
VG GV LS Q++RL+IA + NP I+ +DE TS LD
Sbjct: 470 EVGERGV-KLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1073
RL +++ L S++ +DEPT LD ++ + + V+ H ++ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 1074 AFDELLLM-----KRGGQVI 1088
A D ++ + +V+
Sbjct: 128 AADHVIRISLENGSSKVEVV 147
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-04
Identities = 58/260 (22%), Positives = 109/260 (41%), Gaps = 63/260 (24%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ- 243
+L V+ VKP + +LG G+GK+TL+ + +D + G+++ + + +
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKD 414
Query: 244 --RTCAYISQNDLHF-GEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEID 300
+ + Q + F G T++E + + + D D
Sbjct: 415 LRGHISAVPQETVLFSG--TIKENLKWG-------------------------REDATDD 447
Query: 301 AYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRG--VSGGQKKRVTTGEMLV 357
++A +A Q D+++ L G D + V R G SGGQK+R++ LV
Sbjct: 448 EIVEAAKIA-Q----IHDFIISLPEGYD----SRVE---RGGRNFSGGQKQRLSIARALV 495
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTI-----VSLLQPAPEAYDLFDN 412
KVL++D+ ++ +D T +I +K+ TT + A D
Sbjct: 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTK--GCTTFIITQKIPTALLA-------DK 546
Query: 413 IILLSEGQIVYQGPREKVLE 432
I++L EG++ G +++LE
Sbjct: 547 ILVLHEGKVAGFGTHKELLE 566
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 45/193 (23%), Positives = 73/193 (37%), Gaps = 51/193 (26%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--TEGDISISG-------- 931
+LR +S PG + A+MG +G+GK+TL LAGR+ Y T G + G
Sbjct: 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLLALSP 91
Query: 932 -------------YPK-----NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSD 973
YP + F + + N + S R
Sbjct: 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTA----LNAVRSY--------------RGQET 133
Query: 974 IDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDE 1033
+D + ++E + L+++ ++ G S ++KR I V P + +DE
Sbjct: 134 LDRFDFQDLMEEKIALLKMPE---DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE 190
Query: 1034 PTSGLDARAAAIV 1046
SGLD A +V
Sbjct: 191 SDSGLDIDALKVV 203
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1458 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-29 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 7e-29 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-25 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-21 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-27 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-21 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 8e-27 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 5e-23 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-26 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-21 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-26 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-19 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-17 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-24 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-21 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-24 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-24 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-17 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-23 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-23 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-20 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-23 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-22 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-21 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-20 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-20 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 8e-20 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-16 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-18 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-14 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-04 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-05 | |
| d1gkya_ | 186 | c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac | 9e-04 | |
| d1xjca_ | 165 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 9e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 0.001 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 0.002 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.002 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 0.002 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 0.002 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 0.003 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 114 bits (288), Expect = 5e-29
Identities = 56/217 (25%), Positives = 90/217 (41%), Gaps = 20/217 (9%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQAT-F 939
+ ++ + G L+G SG GKTT + ++AG + TEG I
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPK 76
Query: 940 ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM 999
R Q+ PH+TVYE++ F ++ V +L+++E L N
Sbjct: 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY 133
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGR 1058
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 134 PA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV 188
Query: 1059 TVVCTIHQPSIDIFEAF---DELLLMKRGGQVIYAGP 1092
T + H D EA D + +M R GQ++ G
Sbjct: 189 TTIYVTH----DQVEAMTMGDRIAVMNR-GQLLQIGS 220
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 110 bits (276), Expect = 2e-27
Identities = 61/271 (22%), Positives = 106/271 (39%), Gaps = 52/271 (19%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV 241
+ ++ +K +LLGP G GKTT L +AG + G+I + +
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLP 74
Query: 242 PQ-RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEID 300
P+ R + + Q+ + MTV E + F + EI +R + A
Sbjct: 75 PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK-----DEIDKRVRWA--------- 120
Query: 301 AYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA 360
+LL ++ + +SGGQ++RV +V
Sbjct: 121 --------------------AELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEP 155
Query: 361 KVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420
VLLMDE + LD+ + +K++ L++TTI EA + D I +++ GQ
Sbjct: 156 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQ 214
Query: 421 IVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
++ G +V + P+ VA F+
Sbjct: 215 LLQIGSPTEV--------YLRPNSVFVATFI 237
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 114 bits (287), Expect = 7e-29
Identities = 54/226 (23%), Positives = 88/226 (38%), Gaps = 23/226 (10%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA 940
+ L VS G +T ++G +G+GK+TL++V+ G EG + A
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPA 74
Query: 941 ----RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMF----------VDEV 986
Q +TV E+LL S ++S K + ++
Sbjct: 75 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI 134
Query: 987 MDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
++ ++L L + G LS Q K + I L+ NP +I MDEP +G+ A +
Sbjct: 135 LEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 189
Query: 1047 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
V G T + H+ + D L +M GQ+I G
Sbjct: 190 FNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGR 233
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 103 bits (258), Expect = 5e-25
Identities = 53/255 (20%), Positives = 99/255 (38%), Gaps = 35/255 (13%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV 241
+ + L VS V +TL++GP G+GK+TL+ + G L D G++ + +
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKE 72
Query: 242 P----QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
P Q EMTV E + C G + + ++E ++
Sbjct: 73 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE--- 129
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLV 357
+L+ L L D G+ +SGGQ K V G L+
Sbjct: 130 ------------------KAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALM 166
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417
K+++MDE G+ I ++ ++ + T + + + D++ ++
Sbjct: 167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMF 224
Query: 418 EGQIVYQGPREKVLE 432
GQI+ +G E+ ++
Sbjct: 225 NGQIIAEGRGEEEIK 239
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 112 bits (281), Expect = 3e-28
Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 19/231 (8%)
Query: 872 KAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG 931
K + E+ + L++V+ + G ++MG SG+GK+T+++++ TEG++ I
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDN 66
Query: 932 YPKNQATFARVS-------GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVD 984
N ++ G+ Q P +T E++ + + + R+
Sbjct: 67 IKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRAL 126
Query: 985 EVMDLVELEP-LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
E + + ELE N + LS Q++R+ IA L NP II D+PT LD++
Sbjct: 127 ECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 1044 AIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093
+M+ ++ + G+TVV H I++ + ++ + + G+V L
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTH--DINVARFGERIIYL-KDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 92.6 bits (230), Expect = 2e-21
Identities = 44/257 (17%), Positives = 88/257 (34%), Gaps = 47/257 (18%)
Query: 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHE 236
+ I LK+V+ +K ++GP G+GK+T+L + G++ +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 237 F-----KEFVPQRTC--AYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREK 289
E R ++ Q +T E ++ ++ +S E+
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL-------PLIFKYRGAMSGEER 121
Query: 290 EAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKR 349
++ +A + A +L SGGQ++R
Sbjct: 122 RKRA---------LECLKMAELEERFANHKPNQL-------------------SGGQQQR 153
Query: 350 VTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDL 409
V L ++L D+ + LDS T +I + +K++ T +V
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD--INVARF 211
Query: 410 FDNIILLSEGQIVYQGP 426
+ II L +G++ +
Sbjct: 212 GERIIYLKDGEVEREEK 228
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 110 bits (276), Expect = 4e-27
Identities = 44/209 (21%), Positives = 86/209 (41%), Gaps = 20/209 (9%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS 943
L++++ G + A+ G +G+GKT+L+ ++ G +EG I SG RV
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 944 GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLP 1003
+C Q P T+ E+++F + K+ D+ + N ++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 1004 GVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1063
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1064 IHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
+ D++L++ + G + G
Sbjct: 215 TSKME--HLRKADKILILHQ-GSSYFYGT 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 92.7 bits (230), Expect = 5e-21
Identities = 47/248 (18%), Positives = 91/248 (36%), Gaps = 52/248 (20%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
+LK+++ ++ M + G G+GKT+LLM + G+L+ G IK+ G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------- 98
Query: 245 TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMK 304
++ SQ T++E + F + + +K
Sbjct: 99 -VSFCSQFSWIM-PGTIKENIIFGVS-----------------------YDEYRYKSVVK 133
Query: 305 ATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLL 364
A L + +T++G+ +SGGQ+ R++ + A + L
Sbjct: 134 ACQLQ-----------QDITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYL 181
Query: 365 MDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQ 424
+D LD T Q+ + + T I+ + E D I++L +G +
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSK--MEHLRKADKILILHQGSSYFY 238
Query: 425 GPREKVLE 432
G ++
Sbjct: 239 GTFSELQS 246
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 108 bits (272), Expect = 6e-27
Identities = 45/218 (20%), Positives = 85/218 (38%), Gaps = 20/218 (9%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYTEGDISISGYPKNQAT 938
+ ++ + G + L+G +GAGKTT + +AG R G +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 939 FARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDL-VELEPLTN 997
+ P +TVYE+L+ A+ R D + K ++ + L L+
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLK 134
Query: 998 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
+ G LS +++ L I L++ P ++ MDEP+ GL + V ++ G
Sbjct: 135 QLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 1058 RTVVCTIHQPSIDIFEAF---DELLLMKRGGQVIYAGP 1092
T++ + A +++ GQ++ G
Sbjct: 190 TTILLVEQ----NALGALKVAHYGYVLET-GQIVLEGK 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 93.4 bits (232), Expect = 1e-21
Identities = 53/252 (21%), Positives = 96/252 (38%), Gaps = 42/252 (16%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD-DDLKLTGKIKYCGHEFKEF 240
I +K + V ++ L+G GAGKTT L A+AG + K+ + ++
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 241 VPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEID 300
+ + A + + F E+TV E + + I R +
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAY------NRKDKEGIKRDLEWI--------- 122
Query: 301 AYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA 360
L + G +SGG+++ + G L+
Sbjct: 123 -------------------FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRP 158
Query: 361 KVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420
K+L+MDE S GL ++ + ++++ E TTI+ + Q A A + +L GQ
Sbjct: 159 KLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQNALGALKVAHYGYVLETGQ 216
Query: 421 IVYQGPREKVLE 432
IV +G ++L+
Sbjct: 217 IVLEGKASELLD 228
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 108 bits (271), Expect = 8e-27
Identities = 51/228 (22%), Positives = 92/228 (40%), Gaps = 19/228 (8%)
Query: 872 KAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISG 931
K +Q L +VS G + ++G SGAGK+TL+ + + TEG + + G
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDG 66
Query: 932 Y------PKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDE 985
R G Q+ TV+ ++ L + K V E
Sbjct: 67 QELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTE 123
Query: 986 VMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
++ LV L ++ LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 124 LLSLVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1046 VMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
++ +++ G T++ H+ + + D + ++ G++I
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVI-SNGELIEQDT 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 97.6 bits (243), Expect = 5e-23
Identities = 58/262 (22%), Positives = 93/262 (35%), Gaps = 49/262 (18%)
Query: 177 PSKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHE 236
R IQ L +VS V ++ ++G GAGK+TL+ + G + G E
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 237 FKEFVPQ------RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKE 290
R I Q+ TV + E+ RR E
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK-----DEVKRRVTE 123
Query: 291 AGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRV 350
L L+GL D+ + +SGGQK+RV
Sbjct: 124 L-----------------------------LSLVGLGDKHDSYPSN-----LSGGQKQRV 149
Query: 351 TTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLF 410
L KVLL DE ++ LD +TT I + +K + L +T ++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRIC 208
Query: 411 DNIILLSEGQIVYQGPREKVLE 432
D + ++S G+++ Q +V
Sbjct: 209 DCVAVISNGELIEQDTVSEVFS 230
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 107 bits (268), Expect = 2e-26
Identities = 51/236 (21%), Positives = 98/236 (41%), Gaps = 19/236 (8%)
Query: 879 DRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ-- 936
+ ++L+ +S G + L+G +GAGKTT + +++ + G +++ G +
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEP 70
Query: 937 ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT 996
++ Y + ++ E L F A S + V+ ++ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKI 127
Query: 997 NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
V S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1057 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGR-----QSQKLVEYFEAV 1107
G T++ + H ++ D + L+ G ++ G + ++Q + E FE V
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTVEELKERYKAQNIEEVFEEV 236
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 93.5 bits (232), Expect = 1e-21
Identities = 53/276 (19%), Positives = 98/276 (35%), Gaps = 54/276 (19%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV 241
K +ILK +S ++ + L+GP GAGKTT L ++ + +G + G E
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEP 70
Query: 242 PQ--RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
+ + +Y+ + + M E + F EI
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS--------------------SSSEI 110
Query: 300 DAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGP 359
+ + + ++ GL V S G +++ L+
Sbjct: 111 EEMV--------------ERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVN 151
Query: 360 AKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419
++ ++DE ++GLD ++ K +KQ E TI+ E L D I L+ G
Sbjct: 152 PRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVEFLCDRIALIHNG 209
Query: 420 QIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQEVT 455
IV G E++ + + + + +EV
Sbjct: 210 TIVETGTVEEL--------KERYKAQNIEEVFEEVV 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 107 bits (269), Expect = 2e-26
Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 28/229 (12%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLA-------------GRKTGGYTEGDI 927
++L+ VS R G + +++G SG+GK+T + + G+ + D
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 74
Query: 928 SISGYPKNQATFARVS-GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEV 986
+ KNQ R Q+ H+TV E+++ + + +
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSKHDARERALKY 132
Query: 987 MDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
+ V ++ A P LS Q++R++IA L P ++ DEPTS LD V
Sbjct: 133 LAKVGIDER--AQGKYPV--HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 188
Query: 1047 MRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLMKRGGQVIYAGP 1092
+R ++ + G+T+V H ++ A ++ + G++ G
Sbjct: 189 LRIMQQLAEEGKTMVVVTH----EMGFARHVSSHVIFL-HQGKIEEEGD 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 88.4 bits (219), Expect = 1e-19
Identities = 54/287 (18%), Positives = 99/287 (34%), Gaps = 66/287 (22%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV 241
++LK VS + + ++G G+GK+T L + G I G
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVR 70
Query: 242 PQ----------------RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEIS 285
+ + Q+ + MTV E + + + ++ +
Sbjct: 71 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK----HDAR 126
Query: 286 RREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGG 345
R + L +G+D A + +SGG
Sbjct: 127 ERALKY-----------------------------LAKVGIDERAQ----GKYPVHLSGG 153
Query: 346 QKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPE 405
Q++RV+ L VLL DE ++ LD ++ + M+Q+ E T+V +
Sbjct: 154 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGF 211
Query: 406 AYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFLQ 452
A + ++I L +G+I +G E+V F P + FL+
Sbjct: 212 ARHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 250
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 103 bits (257), Expect = 2e-25
Identities = 36/189 (19%), Positives = 77/189 (40%), Gaps = 16/189 (8%)
Query: 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR 941
+L ++ G + G +G GKTTL+ ++ +G+I +G P +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITKV--KG 70
Query: 942 VSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVG 1001
+ + I ++V + L A L K K + + ++ VE+ L
Sbjct: 71 KIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 122
Query: 1002 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTV 1060
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G +
Sbjct: 123 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 1061 VCTIHQPSI 1069
+ + + S
Sbjct: 180 ISSREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 80.0 bits (197), Expect = 2e-17
Identities = 32/221 (14%), Positives = 75/221 (33%), Gaps = 47/221 (21%)
Query: 178 SKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEF 237
S +L+ ++ ++ + GP G GKTTLL ++ L G+I Y G
Sbjct: 9 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI 65
Query: 238 KEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
+ + ++ + + +++V + + GV + +
Sbjct: 66 TKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMD-------------- 109
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLV 357
L+ + + + +S G +RV L+
Sbjct: 110 ----------------------ALESVEVLDLKKKL------GELSQGTIRRVQLASTLL 141
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVS 398
A++ ++D+ +D + ++ K + +++ I I S
Sbjct: 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 182
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 102 bits (255), Expect = 2e-24
Identities = 52/241 (21%), Positives = 93/241 (38%), Gaps = 25/241 (10%)
Query: 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLA 915
L F +V ++ + LR+++ G AL+G SG+GK+T+ ++
Sbjct: 14 LEFRNVTFT-----------YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 62
Query: 916 GRKTGGYTEGDISISGYP---KNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSS 972
EG I + G+ A+ QN
Sbjct: 63 RFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120
Query: 973 DIDSKTRKMFVDEVMDLVELEPLT-NAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFM 1031
I+ R + MD + + ++G GV LS QR+R+ IA L+ + I+ +
Sbjct: 121 QIEEAAR---MAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILIL 176
Query: 1032 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAG 1091
DE TS LD + + + + RT + H+ S E DE+++++ G ++ G
Sbjct: 177 DEATSALDTESERAIQAALDE-LQKNRTSLVIAHRLS--TIEQADEIVVVED-GIIVERG 232
Query: 1092 P 1092
Sbjct: 233 T 233
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 91.8 bits (228), Expect = 6e-21
Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 46/257 (17%)
Query: 180 KRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKE 239
R++ L++++ + + L+G G+GK+T+ + D D G I GH+ +E
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLRE 81
Query: 240 FVP---QRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
+ + A +SQN F + Y E SR + E
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANN------------IAYARTEEYSREQIE------ 123
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGVSGGQKKRVTTGEM 355
+A +A A D++ K+ GL DT++G+ +SGGQ++R+
Sbjct: 124 -------EAARMAY-----AMDFINKMDNGL----DTIIGENGVL-LSGGQRQRIAIARA 166
Query: 356 LVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415
L+ + +L++DE ++ LD+ + I + ++ T++V + + D I++
Sbjct: 167 LLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHR--LSTIEQADEIVV 222
Query: 416 LSEGQIVYQGPREKVLE 432
+ +G IV +G ++L
Sbjct: 223 VEDGIIVERGTHSELLA 239
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 101 bits (253), Expect = 3e-24
Identities = 54/246 (21%), Positives = 104/246 (42%), Gaps = 22/246 (8%)
Query: 849 LPFQPLSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKT 908
+ + + HV++ + ++ +L+D++ G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 909 TLMDVLAGRKTGGYTEGDISISGYPKNQATFA--RVSGYCEQNDIHSPHVTVYESLLFSA 966
TL++++ T G I I G+ R Q D TV E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR 116
Query: 967 WLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANP 1026
++ + + ++ L + VG GV LS Q++RL+IA + NP
Sbjct: 117 PTATDEEVVEAAKMANAHD--FIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNP 173
Query: 1027 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086
I+ +DE TS LD + +I+ + + RT + H+ S D++++++ G
Sbjct: 174 PILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS--TITHADKIVVIE-NGH 229
Query: 1087 VIYAGP 1092
++ G
Sbjct: 230 IVETGT 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 95.2 bits (237), Expect = 4e-22
Identities = 54/256 (21%), Positives = 101/256 (39%), Gaps = 45/256 (17%)
Query: 180 KRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKE 239
+ ILKD++ ++ +G G GK+TL+ + D +G+I GH K+
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKD 84
Query: 240 FVPQRTCAYIS--QNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
F+ I Q D TV+E + G E+ K A
Sbjct: 85 FLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAH--- 134
Query: 298 EIDAYMKATALAGQKTSLATDYVLKL-LGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
D+++ L G DT VG++ + +SGGQK+R++ +
Sbjct: 135 --------------------DFIMNLPQGY----DTEVGERGVK-LSGGQKQRLSIARIF 169
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416
+ +L++DE ++ LD + I + + + + TT++ + D I+++
Sbjct: 170 LNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHR--LSTITHADKIVVI 225
Query: 417 SEGQIVYQGPREKVLE 432
G IV G +++
Sbjct: 226 ENGHIVETGTHRELIA 241
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 100 bits (249), Expect = 6e-24
Identities = 46/219 (21%), Positives = 86/219 (39%), Gaps = 28/219 (12%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP---KNQATFA 940
L +SG R G + L+G +GAGK+TL+ +AG + +G I +G P + A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLA 71
Query: 941 RVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000
Y Q V+ L KTR +++V + L+
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQ--------HDKTRTELLNDVAGALALDDKLGRS- 122
Query: 1001 GLPGVDGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
+ LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 123 ----TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1054 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
G +V + H + L+K GG+++ +G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 80.4 bits (198), Expect = 3e-17
Identities = 50/255 (19%), Positives = 88/255 (34%), Gaps = 54/255 (21%)
Query: 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQR 244
L +SG V+ + L+GP GAGK+TLL +AG G I++ G + + +
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQPLEAWSATK 69
Query: 245 TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMK 304
LH ++ ++T F+ T ++ + +
Sbjct: 70 L-------ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLND-------------- 108
Query: 305 ATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA---- 360
V L LD +SGG+ +RV +++
Sbjct: 109 ---------------VAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQAN 148
Query: 361 ---KVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417
++LL+DE LD + + K + + + IV LL
Sbjct: 149 PAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRAWLLK 206
Query: 418 EGQIVYQGPREKVLE 432
G+++ G RE+VL
Sbjct: 207 GGKMLASGRREEVLT 221
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 99.2 bits (247), Expect = 1e-23
Identities = 50/238 (21%), Positives = 98/238 (41%), Gaps = 24/238 (10%)
Query: 858 FHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 917
F ++ + D +L +++ + G + ++G SG+GK+TL ++
Sbjct: 4 FRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 52
Query: 918 KTGGYTEGDISISGYP---KNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDI 974
G + I G+ + R G Q D + ++ +++ + +
Sbjct: 53 YI--PENGQVLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNI---SLANPGMSV 106
Query: 975 DSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP 1034
+ + D + + GLS QR+R+ IA LV NP I+ DE
Sbjct: 107 EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEA 166
Query: 1035 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
TS LD + ++MR + + GRTV+ H+ S + D +++M+ G+++ G
Sbjct: 167 TSALDYESEHVIMRNMHK-ICKGRTVIIIAHRLS--TVKNADRIIVME-KGKIVEQGK 220
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 85.4 bits (211), Expect = 7e-19
Identities = 46/257 (17%), Positives = 96/257 (37%), Gaps = 45/257 (17%)
Query: 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFK 238
K IL +++ +K + ++G G+GK+TL + + ++ GH+
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG---QVLIDGHDLA 68
Query: 239 EFVPQ---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKP 295
P R + Q+++ ++ + + + + V ++ K AG
Sbjct: 69 LADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSV-------EKVIYAAKLAGA-- 118
Query: 296 DPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEM 355
+ + + G+SGGQ++R+
Sbjct: 119 -------------------------HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARA 153
Query: 356 LVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415
LV K+L+ DE ++ LD + I + M ++ T I+ + D II+
Sbjct: 154 LVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHR--LSTVKNADRIIV 209
Query: 416 LSEGQIVYQGPREKVLE 432
+ +G+IV QG +++L
Sbjct: 210 MEKGKIVEQGKHKELLS 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 97.7 bits (243), Expect = 3e-23
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 14/214 (6%)
Query: 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFA 940
+ + +D++ G +G SG GK+TL+ ++AG +T T GD+ I N A
Sbjct: 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPA 70
Query: 941 RVS-GYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAM 999
G Q+ PH++V E++ F L + V++V ++++L L +
Sbjct: 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK 127
Query: 1000 VGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 1058
LS QR+R+ I LVA PS+ +DEP S LDA + + GR
Sbjct: 128 PK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 182
Query: 1059 TVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
T++ H D+++++ G+V G
Sbjct: 183 TMIYVTHDQVE-AMTLADKIVVL-DAGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 89.6 bits (222), Expect = 2e-20
Identities = 56/271 (20%), Positives = 100/271 (36%), Gaps = 52/271 (19%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV 241
++ + KD++ + + +GP G GK+TLL +AG +G + +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 242 PQRTC-AYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEID 300
P + Q+ + ++V E M F + G I++R +
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK-----EVINQRVNQV--------- 114
Query: 301 AYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPA 360
++L L D +SGGQ++RV G LV
Sbjct: 115 --------------------AEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 361 KVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420
V L+DE + LD++ Q+ + ++ L T I EA L D I++L G+
Sbjct: 150 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGR 208
Query: 421 IVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
+ G ++ + P + VA F+
Sbjct: 209 VAQVGKPLEL--------YHYPADRFVAGFI 231
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.4 bits (245), Expect = 3e-23
Identities = 47/256 (18%), Positives = 104/256 (40%), Gaps = 42/256 (16%)
Query: 180 KRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKE 239
+ + +L+ ++ ++P +T L+GP G+GK+T+ L G++ G +
Sbjct: 24 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQ 80
Query: 240 FVPQ---RTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
+ + R A + Q FG +++E + + G+
Sbjct: 81 YEHRYLHRQVAAVGQEPQVFG-RSLQENIAY------------------------GLTQK 115
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
P ++ A +G + GL DT V + + +SGGQ++ V L
Sbjct: 116 PTMEEITAAAVKSGAH--------SFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARAL 166
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416
+ VL++D+ ++ LD+++ Q+ + + + + ++ + D+I+ L
Sbjct: 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFL 224
Query: 417 SEGQIVYQGPREKVLE 432
G I G ++++E
Sbjct: 225 EGGAIREGGTHQQLME 240
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.6 bits (235), Expect = 6e-22
Identities = 48/242 (19%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVL 914
+ F V+++ ++ L+ ++ RPG +TAL+G +G+GK+T+ +L
Sbjct: 11 LVQFQDVSFAYPNRPDVLV----------LQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 915 AGRKTGGYTEGDISISGYP---KNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLS 971
T G + + G P R Q ++ E++ + + +
Sbjct: 61 QNLYQ--PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPT 117
Query: 972 SDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFM 1031
+ + + L + V G LS QR+ + +A L+ P ++ +
Sbjct: 118 MEEITAAAVK-SGAHSFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLIL 175
Query: 1032 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYA 1090
D+ TS LDA + V + + + + R+V+ S + E D +L ++ GG +
Sbjct: 176 DDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLE-GGAIREG 232
Query: 1091 GP 1092
G
Sbjct: 233 GT 234
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 91.9 bits (228), Expect = 4e-21
Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 24/240 (10%)
Query: 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLA 915
L+ HV+++ D D Q+LRD+S +P + A G SG GK+T+ +L
Sbjct: 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49
Query: 916 GRKTGGYTEGDISISGYP---KNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSS 972
T G+I+I G P + + G+ Q+
Sbjct: 50 RFYQ--PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDE 107
Query: 973 DIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1032
D+ F ++ + + T VG GV +S QR+RL IA + NP I+ +D
Sbjct: 108 DLWQVLDLAFARSFVENMPDQLNT--EVGERGV-KISGGQRQRLAIARAFLRNPKILMLD 164
Query: 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
E T+ LD+ + ++V + + + + GRT + H+ S D++ +++ GQ+ +G
Sbjct: 165 EATASLDSESESMVQKALDS-LMKGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGK 220
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 87.6 bits (217), Expect = 1e-19
Identities = 48/251 (19%), Positives = 90/251 (35%), Gaps = 42/251 (16%)
Query: 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ 243
QIL+D+S +P+ + GP G GK+T+ L G+I G +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 244 RTCAYIS--QNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDA 301
+ I D T+RE + + + +++ PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL--- 129
Query: 302 YMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAK 361
+T VG++ + +SGGQ++R+ + K
Sbjct: 130 -----------------------------NTEVGERGVK-ISGGQRQRLAIARAFLRNPK 159
Query: 362 VLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQI 421
+L++DE + LDS + + K + ++ TT+V + D I + +GQI
Sbjct: 160 ILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHR--LSTIVDADKIYFIEKGQI 215
Query: 422 VYQGPREKVLE 432
G +++
Sbjct: 216 TGSGKHNELVA 226
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 89.6 bits (222), Expect = 2e-20
Identities = 58/218 (26%), Positives = 93/218 (42%), Gaps = 22/218 (10%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTE---GDISISGYPKNQATFA 940
+R++S + G L+G SG GKTT + ++AG + + GD ++ K
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 941 RVSG--YCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNA 998
+ Q+ PH+TVY+++ F LR + + V EV +L+ L L N
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR 135
Query: 999 MVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1057
LS QR+R+ + +V P + MDEP S LDA+ + ++ G
Sbjct: 136 KPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 1058 RTVVCTIHQPSIDIFEAF---DELLLMKRGGQVIYAGP 1092
T + H D EA D + +M R G + G
Sbjct: 191 VTTIYVTH----DQVEAMTMGDRIAVMNR-GVLQQVGS 223
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 88.8 bits (220), Expect = 4e-20
Identities = 63/274 (22%), Positives = 110/274 (40%), Gaps = 52/274 (18%)
Query: 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD---LKLTGKIKYCGHEFK 238
++ ++++S VK +LLGP G GKTT L +AG + + + K+ +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 239 EFVPQRT-CAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDP 297
P+ A + Q+ + MTV + + F + V EI +R +E
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPR-----QEIDQRVREV------ 123
Query: 298 EIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLV 357
+LLGL + + +SGGQ++RV G +V
Sbjct: 124 -----------------------AELLGLTELLNRKPRE-----LSGGQRQRVALGRAIV 155
Query: 358 GPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417
+V LMDE + LD+ ++ +K++ L +TTI EA + D I +++
Sbjct: 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN 214
Query: 418 EGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
G + G ++V + P VA F+
Sbjct: 215 RGVLQQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 87.8 bits (217), Expect = 8e-20
Identities = 61/275 (22%), Positives = 111/275 (40%), Gaps = 55/275 (20%)
Query: 178 SKKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEF 237
S+K K L ++S V+ ++LGP GAGKT L +AG D +G+I G +
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDV 64
Query: 238 KEFVPQR-TCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPD 296
+ P++ A++ QN F M V++ ++F R + +R +
Sbjct: 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP--------KRVLDT----- 111
Query: 297 PEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEML 356
+ L ++ D+ +SGG+++RV L
Sbjct: 112 ------------------------ARDLKIEHLL-----DRNPLTLSGGEQQRVALARAL 142
Query: 357 VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILL 416
V K+LL+DE + LD T + + + ++T + EA + D I ++
Sbjct: 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVV 201
Query: 417 SEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
+G+++ G E++ F+ P VA F+
Sbjct: 202 MDGKLIQVGKPEEI--------FEKPVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 78.6 bits (193), Expect = 1e-16
Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 17/211 (8%)
Query: 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFAR-V 942
L ++S G ++G +GAGKT ++++AG G I + G + +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHD 73
Query: 943 SGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGL 1002
+ QN PH+ V ++L F ++ V + +++E L +
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLDRN--- 124
Query: 1003 PGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1061
LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 --PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1062 CTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
H + + D + ++ G++I G
Sbjct: 183 HITHDQT-EARIMADRIAVV-MDGKLIQVGK 211
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 87.1 bits (215), Expect = 2e-19
Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 19/220 (8%)
Query: 880 RLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGY------P 933
++ L +V+ G ++G SGAGKTT M ++AG + G++
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGK 74
Query: 934 KNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELE 993
R G Q P++T +E++ F + + + V+EV ++++
Sbjct: 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIH 131
Query: 994 PLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
+ N LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 132 HVLNHFPR-----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV 186
Query: 1054 V-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092
G T++ H P+ DIF D + ++ G+++ G
Sbjct: 187 QSRLGVTLLVVSHDPA-DIFAIADRVGVL-VKGKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 84.0 bits (207), Expect = 2e-18
Identities = 55/276 (19%), Positives = 102/276 (36%), Gaps = 51/276 (18%)
Query: 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD---LKLTGKIKYCGH 235
KK K+ L +V+ ++ +LGP GAGKTT + +AG L ++
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73
Query: 236 EFKEFVPQRTCAYISQNDLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKP 295
+ R + Q + +T E + F +++ R++
Sbjct: 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAF-------PLTNMKMSKEEIRKR------ 120
Query: 296 DPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEM 355
+ V K+L + + R +SG Q++RV
Sbjct: 121 ---------------------VEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARA 154
Query: 356 LVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415
LV +LL+DE + LD+ +K++ L +T +V PA + + + D + +
Sbjct: 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGV 213
Query: 416 LSEGQIVYQGPREKVLEFFEYMGFKCPDRKGVADFL 451
L +G++V G E + + P VA +
Sbjct: 214 LVKGKLVQVGKPEDL--------YDNPVSIQVASLI 241
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 74.3 bits (182), Expect = 5e-15
Identities = 42/202 (20%), Positives = 89/202 (44%), Gaps = 16/202 (7%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVS-GYCEQNDI 951
L+G +GAGK+ ++++AG G++ ++G R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYA 80
Query: 952 HSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTE 1011
PH++VY ++ + +++ R V E+ + + + L + LS
Sbjct: 81 LFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGG 130
Query: 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSID 1070
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H +
Sbjct: 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-E 189
Query: 1071 IFEAFDELLLMKRGGQVIYAGP 1092
DE+ +M G+++ G
Sbjct: 190 AAMLADEVAVM-LNGRIVEKGK 210
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.4 bits (177), Expect = 2e-14
Identities = 50/252 (19%), Positives = 96/252 (38%), Gaps = 55/252 (21%)
Query: 201 LLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEM 259
LLGP GAGK+ L +AG + D G+++ G + P +R ++ Q+ F +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDY 319
+V + + R + E RR +E
Sbjct: 86 SVYRNIAYGLRNVER-------VERDRRVREM---------------------------- 110
Query: 320 VLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQ 379
+ + D+ +SGG+++RV LV ++LL+DE + +D T
Sbjct: 111 ------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 380 ICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGPREKVLEFFEYMGF 439
+ + ++ + ++ + EA L D + ++ G+IV +G +++
Sbjct: 165 LMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS------- 216
Query: 440 KCPDRKGVADFL 451
VA+FL
Sbjct: 217 --AKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 49.2 bits (116), Expect = 5e-07
Identities = 25/198 (12%), Positives = 43/198 (21%), Gaps = 36/198 (18%)
Query: 898 ALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVT 957
+ G G GKTTL+ + R R ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEV--------RDPETKKRTGFRIITTE 53
Query: 958 VYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLT 1017
+ + S + + S + E
Sbjct: 54 GKKKIFSSKFFTSKKLVGSYGVNVQYFE----------------------ELAIPILERA 91
Query: 1018 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077
+I +DE + + D VV TI + E
Sbjct: 92 YREAKKDRRKVIIIDEIGKMEL-FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 1078 LLLMKRGGQVIYAGPLGR 1095
+ + G +I P R
Sbjct: 149 IRRLP-GAVLIELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 44.6 bits (104), Expect = 2e-05
Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 3/82 (3%)
Query: 200 LLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEM 259
++ G PG GKTTL+ + +L E + I+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 260 TVRETMDFSGRCLGVGTRYEML 281
+ T GV +Y
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEE 82
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (92), Expect = 9e-04
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 196 SRMTLLLGPPGAGKTTLLMALAGKLDDDLKL----TGKIKYCGHEFKEFVPQRTC 246
SR ++ GP G GK+TLL L + D T + G + +
Sbjct: 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSV 55
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Score = 39.4 bits (91), Expect = 9e-04
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 203 GPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP 242
G +GKTTL+ + G +K+ GH + P
Sbjct: 8 GYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARP 47
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (90), Expect = 0.001
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 196 SRMTLLLGPPGAGKTTLLMALAGKLDDD 223
+R L GPPG GKTTL+ + L
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKASEVLKSS 28
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 40.0 bits (93), Expect = 0.002
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD 221
LK + + R L GP +GKTTL AL
Sbjct: 137 DSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 179
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 38.4 bits (88), Expect = 0.002
Identities = 19/134 (14%), Positives = 36/134 (26%), Gaps = 3/134 (2%)
Query: 203 GPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVR 262
G GKTTLL L L G IK+ H+ P + + + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRK---AGAAQTIV 65
Query: 263 ETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLK 322
+ E+ + + ++ + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 323 LLGLDICADTMVGD 336
L +D + D
Sbjct: 126 ELVIDRHVIAVASD 139
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 38.5 bits (88), Expect = 0.002
Identities = 10/63 (15%), Positives = 18/63 (28%)
Query: 196 SRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLH 255
+RM +L G AGK+ ++ L L + G + +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 256 FGE 258
Sbjct: 63 SIG 65
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 39.2 bits (90), Expect = 0.002
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 179 KKRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFK 238
++ L V+ LL G PG+GKT+L A+ + ++ I FK
Sbjct: 15 LNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNV-----IVIDNDTFK 69
Query: 239 EF 240
+
Sbjct: 70 QQ 71
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 37.7 bits (86), Expect = 0.003
Identities = 16/104 (15%), Positives = 38/104 (36%)
Query: 196 SRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLH 255
++ ++ GP G GK+T LA +LD+ + G I P + ++ +
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKN 61
Query: 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEI 299
++TV + + L + +++ + +
Sbjct: 62 ITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRF 105
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1458 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.85 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.78 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.67 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.56 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.41 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.4 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.14 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.02 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.99 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.88 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.69 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.6 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.13 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 98.01 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.98 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.91 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.9 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.66 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.58 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.57 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.55 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.47 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.39 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.34 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.22 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.19 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.15 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.12 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.96 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.96 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.94 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.94 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.94 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.94 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.92 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.92 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.9 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.9 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.89 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.88 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.84 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.84 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.81 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.79 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.75 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.75 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.74 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.73 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.69 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.68 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.67 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.65 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.64 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.63 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.63 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.61 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.61 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.61 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.61 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.56 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.48 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.47 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.46 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.45 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.43 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.43 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.41 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.41 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.41 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.4 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.38 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.35 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.35 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.34 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.32 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.3 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.29 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.28 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.27 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.27 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.25 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.24 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.24 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.22 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.22 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.2 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.2 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.19 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.18 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.17 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.16 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.15 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.14 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.14 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.13 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.13 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.1 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.09 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.09 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.08 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.08 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.08 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.07 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.07 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.06 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.06 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.05 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.04 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.04 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.03 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.02 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.01 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.01 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.99 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.98 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.98 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.98 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.96 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.94 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.94 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.94 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.94 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.93 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.92 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.9 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.9 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.89 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.89 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.89 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.87 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.85 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.85 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.82 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.81 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.81 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.78 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.78 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.78 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.77 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.74 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.74 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.73 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.71 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.68 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.63 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.63 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.62 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.62 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.6 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.6 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.57 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.57 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.56 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.55 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.55 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.54 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.53 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.48 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.47 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.46 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.43 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.43 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.4 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.38 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.35 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.34 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.3 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.27 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.26 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.18 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.18 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 95.14 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.13 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.11 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.1 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.08 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.07 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.03 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.01 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.01 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.01 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.01 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.99 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.98 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.9 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.88 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.86 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.85 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.83 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.83 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.82 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.82 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.81 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.76 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 94.76 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.76 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.73 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.73 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.71 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.71 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.69 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.69 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.69 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.69 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.65 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.62 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.61 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.61 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.61 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.59 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.58 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.56 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.53 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.53 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.52 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 94.51 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.49 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.44 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.38 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.37 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.34 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.32 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.32 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.29 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.29 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.21 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.2 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.17 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.16 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.15 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.13 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.13 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.12 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.11 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.1 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.1 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.07 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.06 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.04 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.02 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.98 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.96 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.95 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.94 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.92 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.9 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.88 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.86 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.85 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.85 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.85 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.84 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.84 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.82 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.82 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.82 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.81 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.81 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.81 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.81 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.81 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.79 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.74 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.71 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.7 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.69 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.66 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.65 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.65 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.63 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.62 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.6 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.6 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.57 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.55 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.53 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.52 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.51 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.5 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.47 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.35 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.34 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.23 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.22 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.19 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.18 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.18 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.18 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.17 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.17 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.16 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.15 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.15 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.14 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.14 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.14 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.1 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.09 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 93.08 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.06 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.06 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.04 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.02 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 93.01 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.01 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.0 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.96 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.94 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.94 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.93 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.92 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.92 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.92 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.92 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.88 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.88 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.86 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.79 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.79 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 92.77 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.76 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 92.75 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.75 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.74 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.74 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.71 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.69 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.68 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.66 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.65 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.57 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.54 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.53 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.47 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.47 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.46 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.44 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.44 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.4 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.4 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.39 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.37 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.36 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.36 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.34 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.33 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.29 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.26 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.25 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.24 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.21 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.18 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.16 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.11 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.06 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.03 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.02 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.02 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.96 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.91 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.87 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.82 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.82 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.76 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 91.73 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.72 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.72 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.7 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.69 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.68 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.64 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 91.62 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.58 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.49 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.49 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.39 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 91.38 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 91.37 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.34 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.3 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.2 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.19 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 91.17 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.08 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.03 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.02 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.02 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.01 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.0 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.98 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.83 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.81 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.79 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.67 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.58 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.42 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 90.4 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.12 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 90.07 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.03 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.92 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.88 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.87 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.65 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 89.64 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.58 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 89.42 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 89.34 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 89.0 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 88.95 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.71 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 88.6 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.47 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 88.35 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 88.28 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 88.27 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 88.16 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.16 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 88.12 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 87.78 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.7 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.53 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 87.46 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.45 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.43 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.35 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.2 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.77 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.47 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.17 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 86.16 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 86.12 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.93 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 85.64 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.62 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 85.48 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.19 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 83.64 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 83.56 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 83.14 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 83.09 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 82.55 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 81.96 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 80.75 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=336.98 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=172.5
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCC-CCEEEEECCCCCCCCCCC
Q ss_conf 4426313056783883999985999968999999954989999964289997962577666-640899637898899999
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-QRTCAYISQNDLHFGEMT 260 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lT 260 (1458)
...+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+||+++.+..+ ++.++||+|++.+++.+|
T Consensus 12 ~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~t 88 (232)
T d2awna2 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 88 (232)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC-----
T ss_pred CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHH
T ss_conf 999981117788699899999899982999999996587888---88899999977888644432223433420264333
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999986450167712567799449988609999832999999998720001027999999909964345323686688
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg~~~~r 340 (1458)
|+|++.|+.+.++... .| ....++.+++.++|++.+|..+.+
T Consensus 89 v~eni~~~~~~~~~~~----------~~------------------------~~~~v~~~l~~~~l~~~~~~~~~~---- 130 (232)
T d2awna2 89 VAENMSFGLKLAGAKK----------EV------------------------INQRVNQVAEVLQLAHLLDRKPKA---- 130 (232)
T ss_dssp --------------------------CH------------------------HHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHCCCCH----------HH------------------------HHHHHHHHHHHCCCHHHHHCCHHH----
T ss_conf 7889789998759988----------99------------------------999999999757886566489656----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEECCCE
Q ss_conf 89957889999999981699597985799899999999999999999884696699998079338981058799972982
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 341 GlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL~~G~ 420 (1458)
|||||||||+||++|+.+|++++|||||+|||+.++.++++.++++.+..+ ++++.++|+..++..++|++++|.+|+
T Consensus 131 -LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g-~tii~vTHd~~~a~~~~dri~vm~~G~ 208 (232)
T d2awna2 131 -LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADKIVVLDAGR 208 (232)
T ss_dssp ----------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC-CEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf -999999999999997039988997588878898899899999999987429-879999489999999699999997999
Q ss_pred EEEECCHHHHHH
Q ss_conf 999739666999
Q 000506 421 IVYQGPREKVLE 432 (1458)
Q Consensus 421 ivy~Gp~~~~~~ 432 (1458)
++.+|+++++.+
T Consensus 209 iv~~G~~~el~~ 220 (232)
T d2awna2 209 VAQVGKPLELYH 220 (232)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEECHHHHHH
T ss_conf 999808999973
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=334.05 Aligned_cols=208 Identities=25% Similarity=0.377 Sum_probs=166.2
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCCC-CEEEEECCCCCCCCCCC
Q ss_conf 44263130567838839999859999689999999549899999642899979625776666-40899637898899999
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ-RTCAYISQNDLHFGEMT 260 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lT 260 (1458)
...+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++....+. +.+|||+|++.+++.+|
T Consensus 18 ~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 94 (239)
T d1v43a3 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 94 (239)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCC
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCH
T ss_conf 999981306788799899999999982999999997589998---78799916413547700015899800335342220
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999986450167712567799449988609999832999999998720001027999999909964345323686688
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg~~~~r 340 (1458)
|+|++.|.++.++... .| ....++.+++.+||++.+|..+..
T Consensus 95 v~enl~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~---- 136 (239)
T d1v43a3 95 VYENIAFPLKIKKFPK----------DE------------------------IDKRVRWAAELLQIEELLNRYPAQ---- 136 (239)
T ss_dssp HHHHHHTTCC--CCCH----------HH------------------------HHHHHHHHHHHTTCGGGTTSCTTT----
T ss_pred HHHHHHHHHHHCCCCH----------HH------------------------HHHHHHHHHHHCCCHHHHCCCHHH----
T ss_conf 9999999998739999----------99------------------------999999999875985566099546----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEECCCE
Q ss_conf 89957889999999981699597985799899999999999999999884696699998079338981058799972982
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 341 GlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL~~G~ 420 (1458)
|||||||||+||++|+.+|++|+|||||+|||+.++.++++.++++.+..+ ++++.++|+.+++..++|++++|.+|+
T Consensus 137 -LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g-~tii~vTHd~~~a~~~~dri~vm~~G~ 214 (239)
T d1v43a3 137 -LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK-VTTIYVTHDQVEAMTMGDRIAVMNRGQ 214 (239)
T ss_dssp -CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf -999998899997664049982430688666898999899999999987319-807999489999998699999998999
Q ss_pred EEEECCHHHHHH
Q ss_conf 999739666999
Q 000506 421 IVYQGPREKVLE 432 (1458)
Q Consensus 421 ivy~Gp~~~~~~ 432 (1458)
++..|+++++.+
T Consensus 215 iv~~G~~~el~~ 226 (239)
T d1v43a3 215 LLQIGSPTEVYL 226 (239)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHH
T ss_conf 999859999986
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=330.52 Aligned_cols=206 Identities=27% Similarity=0.368 Sum_probs=119.0
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCC-------CCEEEEECCCCCC
Q ss_conf 426313056783883999985999968999999954989999964289997962577666-------6408996378988
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP-------QRTCAYISQNDLH 255 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 255 (1458)
..+|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L 92 (240)
T d1g2912 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHH
T ss_conf 99985606688699899999999980999999996487889---898999999803566444245322551200221222
Q ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999999864501677125677994499886099998329999999987200010279999999099643453236
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335 (1458)
Q Consensus 256 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg 335 (1458)
++.+||.|++.|..+.++... .|. ...++.+++.+||++.+|..++
T Consensus 93 ~~~ltV~eni~~~~~~~~~~~----------~e~------------------------~~~v~~~l~~~~l~~~~~~~p~ 138 (240)
T d1g2912 93 YPHMTVYDNIAFPLKLRKVPR----------QEI------------------------DQRVREVAELLGLTELLNRKPR 138 (240)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------HHH------------------------HHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCHHHHHHHHHHHHHHCCCCH----------HHH------------------------HHHHHHHHHHCCCHHHHCCCHH
T ss_conf 310116676330687729998----------999------------------------9999999987599667629933
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEE
Q ss_conf 86688899578899999999816995979857998999999999999999998846966999980793389810587999
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~l 415 (1458)
+ |||||||||+||++|+.+|+++++||||+|||+.++.++++.++++.+.. +++++.++|+.+++..++|++++
T Consensus 139 ~-----LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHd~~~~~~~~drv~v 212 (240)
T d1g2912 139 E-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMGDRIAV 212 (240)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEE
T ss_pred H-----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHCCEEEE
T ss_conf 4-----99999999999999826998898258876569899989999999998636-98899995999999996999999
Q ss_pred ECCCEEEEECCHHHHH
Q ss_conf 7298299973966699
Q 000506 416 LSEGQIVYQGPREKVL 431 (1458)
Q Consensus 416 L~~G~ivy~Gp~~~~~ 431 (1458)
|.+|+++..|+++++.
T Consensus 213 m~~G~iv~~G~~~el~ 228 (240)
T d1g2912 213 MNRGVLQQVGSPDEVY 228 (240)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEECCHHHHH
T ss_conf 9899999985999998
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=326.53 Aligned_cols=214 Identities=26% Similarity=0.363 Sum_probs=190.3
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEEC
Q ss_conf 89995224586252134201665334301113146784780999965799964478860508967980155999989507
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 934 (1458)
.+.++|+++++. ...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred CEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 189986999989-------------9999856066886998999999999809999999964878--8989899999980
Q ss_pred CCC-------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 811-------2234389971589889999989999998752059999988999999999998399753222246999887
Q 000506 935 NQA-------TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDG 1007 (1458)
Q Consensus 935 ~~~-------~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~g 1007 (1458)
... ..+|.+|||+|++.++|.+||+|++.|...++ ..+.++.+++++++++.++|.+.++..+. .
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p~-----~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----E 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----G
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCHH-----H
T ss_conf 356644424532255120022122231011667633068772---99989999999999987599667629933-----4
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCE
Q ss_conf 8988989999999995199789993999999999999999999998757-998999935850999986361889925939
Q 000506 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1008 lSgGqrkRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG~ 1086 (1458)
||||||||++||++|+.+|++|+|||||+|||+.++..+++.++++.++ |.|||+++|+.. ++...+|++++|. +|+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~-~G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN-RGV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEE-CCE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-9999699999998-999
Q ss_pred EEEECCC
Q ss_conf 9994799
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~y~G~~ 1093 (1458)
++..|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEECCH
T ss_conf 9998599
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=330.28 Aligned_cols=203 Identities=26% Similarity=0.372 Sum_probs=179.2
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCCC-CEEEEECCCCCCCCCCCHH
Q ss_conf 263130567838839999859999689999999549899999642899979625776666-4089963789889999999
Q 000506 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ-RTCAYISQNDLHFGEMTVR 262 (1458)
Q Consensus 184 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~ 262 (1458)
.+|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+..++ +.+|||+|++.+++.+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHH
T ss_conf 7884337898799899999899982999999996476888---7889995673465216574056151211117466577
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998645016771256779944998860999983299999999872000102799999990996434532368668889
Q 000506 263 ETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV 342 (1458)
Q Consensus 263 Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg~~~~rGl 342 (1458)
|++.|+.+.++.... ..++.+++.+||++..|..+++ |
T Consensus 91 enl~~~~~~~~~~~~-------------------------------------~~~~~~l~~~~l~~~~~~~~~~-----L 128 (229)
T d3d31a2 91 KNLEFGMRMKKIKDP-------------------------------------KRVLDTARDLKIEHLLDRNPLT-----L 128 (229)
T ss_dssp HHHHHHHHHHCCCCH-------------------------------------HHHHHHHHHTTCTTTTTSCGGG-----S
T ss_pred HHHHHHHHHCCCCHH-------------------------------------HHHHHHHHHHCCHHHHHCCHHH-----C
T ss_conf 888887764055389-------------------------------------9999999982565557589554-----7
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEECCCEEE
Q ss_conf 95788999999998169959798579989999999999999999988469669999807933898105879997298299
Q 000506 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIV 422 (1458)
Q Consensus 343 SGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL~~G~iv 422 (1458)
||||||||+||++|+.+|++|+|||||+|||+.++.++.+.++++.+.. +++++.++|+.+++.+++|++++|.+|+++
T Consensus 129 SGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~-g~tii~vtHd~~~~~~~~drv~vm~~G~iv 207 (229)
T d3d31a2 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIAVVMDGKLI 207 (229)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred CHHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHCCEEEEEECCEEE
T ss_conf 9998401403043443677144347876799899999999999998647-968999749999999969999999799999
Q ss_pred EECCHHHHHH
Q ss_conf 9739666999
Q 000506 423 YQGPREKVLE 432 (1458)
Q Consensus 423 y~Gp~~~~~~ 432 (1458)
..|+++++.+
T Consensus 208 ~~g~~~el~~ 217 (229)
T d3d31a2 208 QVGKPEEIFE 217 (229)
T ss_dssp EEECHHHHHS
T ss_pred EECCHHHHHH
T ss_conf 9869999986
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=332.49 Aligned_cols=207 Identities=23% Similarity=0.326 Sum_probs=132.6
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCC-----C-CCEEEEECCCCCC
Q ss_conf 442631305678388399998599996899999995498999996428999796257766-----6-6408996378988
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV-----P-QRTCAYISQNDLH 255 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~-----~-~~~~~yv~Q~d~~ 255 (1458)
...+|+|+|+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|+++.... . ++.++||+|+..+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCC
T ss_conf 989980407898799899999899980999999997586888---74599999995137311153120451477304334
Q ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999999864501677125677994499886099998329999999987200010279999999099643453236
Q 000506 256 FGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVG 335 (1458)
Q Consensus 256 ~~~lTV~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg 335 (1458)
+|.+||+|++.|+.+.++... .+ ....++.+++.+||++.+|..++
T Consensus 94 ~p~ltv~eni~~~l~~~~~~~----------~~------------------------~~~~v~~~l~~~gL~~~~~~~p~ 139 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNMKMSK----------EE------------------------IRKRVEEVAKILDIHHVLNHFPR 139 (242)
T ss_dssp CTTSCHHHHHHGGGTTSSCCH----------HH------------------------HHHHHHHHHHHTTCGGGTTSCGG
T ss_pred CCCCCHHHHHHHHHHHHCCCH----------HH------------------------HHHHHHHHHHHCCHHHHHHCCHH
T ss_conf 666657777665567613799----------99------------------------99999999866591766648954
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEE
Q ss_conf 86688899578899999999816995979857998999999999999999998846966999980793389810587999
Q 000506 336 DQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 336 ~~~~rGlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~l 415 (1458)
+ |||||||||+||++|+.+|+++++||||+|||+.++.++.+.++++.+..+ ++++.++|+..++.+++|++++
T Consensus 140 ~-----LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g-~tvi~vTHd~~~~~~~~dri~v 213 (242)
T d1oxxk2 140 E-----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG-VTLLVVSHDPADIFAIADRVGV 213 (242)
T ss_dssp G-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEE
T ss_pred H-----CCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHCCEEEE
T ss_conf 5-----999998589987577604661454478667998998899899999986359-8799997999999996999999
Q ss_pred ECCCEEEEECCHHHHH
Q ss_conf 7298299973966699
Q 000506 416 LSEGQIVYQGPREKVL 431 (1458)
Q Consensus 416 L~~G~ivy~Gp~~~~~ 431 (1458)
|.+|+++..|+++++.
T Consensus 214 m~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLY 229 (242)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEECCHHHHH
T ss_conf 9899999986999998
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=328.85 Aligned_cols=214 Identities=25% Similarity=0.376 Sum_probs=191.2
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEEC
Q ss_conf 89995224586252134201665334301113146784780999965799964478860508967980155999989507
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 934 (1458)
.++++|++.++. ...+|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p--~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 499987999999-------------99998130678879989999999998299999999758999--878799916413
Q ss_pred CC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 81-12234389971589889999989999998752059999988999999999998399753222246999887898898
Q 000506 935 NQ-ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQR 1013 (1458)
Q Consensus 935 ~~-~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqr 1013 (1458)
.. ...+|.+|||+|++.+++.+||+|++.|.+.++ ..+.++.+++++++++.++|.+.+|..+ ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHH
T ss_conf 547700015899800335342220999999999873---9999999999999998759855660995-----46999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECC
Q ss_conf 9999999995199789993999999999999999999998757-998999935850999986361889925939999479
Q 000506 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1014 kRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~ 1092 (1458)
||++||++|+.+|+||+|||||+|||+.++..+++.++++.++ |.|+|+++|++. ++.+.+|++++|.+ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999766404998243068866689899989999999998731980799948999-99986999999989-99999859
Q ss_pred C
Q ss_conf 9
Q 000506 1093 L 1093 (1458)
Q Consensus 1093 ~ 1093 (1458)
+
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=331.13 Aligned_cols=213 Identities=27% Similarity=0.396 Sum_probs=188.2
Q ss_pred EEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECC
Q ss_conf 99952245862521342016653343011131467847809999657999644788605089679801559999895078
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 935 (1458)
++++|+++++. ...+|+|||+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 99999999989-------------9999811177886998999998999829999999965878--88888999999778
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 1-122343899715898899999899999987520599999889999999999983997532222469998878988989
Q 000506 936 Q-ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014 (1458)
Q Consensus 936 ~-~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1014 (1458)
. ...+|.+|||+|++.+++.+||+|++.|.+.++. .+.++.+++++++++.++|.+..+..+. .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHH
T ss_conf 886444322234334202643337889789998759---9889999999999975788656648965-----69999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 99999999519978999399999999999999999999875-79989999358509999863618899259399994799
Q 000506 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1015 Rl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~ 1093 (1458)
|++||++|+.+|++|+|||||+|||+.++..+++.++++.+ .|.|||+++|++. ++.+.+|++++|. +|+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEECH
T ss_conf 9999999703998899758887889889989999999998742987999948999-9999699999997-9999998089
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=326.77 Aligned_cols=200 Identities=25% Similarity=0.331 Sum_probs=88.8
Q ss_pred EECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECCC------CCCCCEEEEECCCCCCCCC
Q ss_conf 0111314678478099996579996447886050896798015599998950781------1223438997158988999
Q 000506 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ------ATFARVSGYCEQNDIHSPH 955 (1458)
Q Consensus 882 ~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~------~~~~~~~~yv~Q~d~~~~~ 955 (1458)
++|+|||+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.+|||+|+..+++.
T Consensus 19 ~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~ 96 (240)
T d3dhwc1 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS 96 (240)
T ss_dssp EEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTT
T ss_pred EEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC--CCCCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 98615057886997999989998988899998758863--6677328867685208755511554166430225222799
Q ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 99899999987520599999889999999999983997532222469998878988989999999995199789993999
Q 000506 956 VTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035 (1458)
Q Consensus 956 lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~Lv~~p~il~LDEPT 1035 (1458)
+||+|++.|...++ ..+.++.+++++++++.++|.+.++..++ .||||||||++||++|+.+|++|++||||
T Consensus 97 ~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~~-----~LSGG~~QRvaiAraL~~~P~lLllDEPt 168 (240)
T d3dhwc1 97 RTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEAT 168 (240)
T ss_dssp SBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCBS-----CCCHHHHHHHHHHHHHHTCCSEEEEESGG
T ss_pred CCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHHCCHH-----HCCHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 64999999999984---99989999999999997699035548943-----49999998999864010589868744655
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 999999999999999998757-9989999358509999863618899259399994799
Q 000506 1036 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1036 sGLD~~sa~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~ 1093 (1458)
+|||+.++..+++.++++.++ |.|||+++|+.. ++...+|++++|.+ |++++.|++
T Consensus 169 ~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv~~G~~ 225 (240)
T d3dhwc1 169 SALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQDTV 225 (240)
T ss_dssp GSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEEEEEET
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 6589888567999999998646978999838999-99986999999979-999998799
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=327.04 Aligned_cols=216 Identities=25% Similarity=0.391 Sum_probs=190.5
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEEC
Q ss_conf 89995224586252134201665334301113146784780999965799964478860508967980155999989507
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 934 (1458)
.++++|++++++. ++..+|+|||+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEEEEEEECC-----------CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 8999757999889-----------99899804078987998999998999809999999975868--8874599999995
Q ss_pred CC------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 81------122343899715898899999899999987520599999889999999999983997532222469998878
Q 000506 935 NQ------ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGL 1008 (1458)
Q Consensus 935 ~~------~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~gl 1008 (1458)
.. ...+|.+|||+|+..++|.+||+|++.|....+ ..+.++.+++++++++.++|.+..|..++ .|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----EL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCHH-----HC
T ss_conf 13731115312045147730433466665777766556761---37999999999999866591766648954-----59
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEE
Q ss_conf 988989999999995199789993999999999999999999998757-9989999358509999863618899259399
Q 000506 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1087 (1458)
Q Consensus 1009 SgGqrkRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG~~ 1087 (1458)
|||||||++||++|+.+|++|++||||+|||+.++..+++.++++.++ |.|+|+++|++. ++.+.+|++++|.+ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-99996999999989-999
Q ss_pred EEECCC
Q ss_conf 994799
Q 000506 1088 IYAGPL 1093 (1458)
Q Consensus 1088 ~y~G~~ 1093 (1458)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEECCH
T ss_conf 998699
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=321.92 Aligned_cols=219 Identities=25% Similarity=0.413 Sum_probs=175.7
Q ss_pred EEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECC
Q ss_conf 99952245862521342016653343011131467847809999657999644788605089679801559999895078
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 935 (1458)
++++|++++++.. .....+|+|||+.+++||++||+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCC--CCCCEEEECCEECC
T ss_conf 8999079994899---------820898713377884997999988999982165575068877--77662699999857
Q ss_pred CC------CC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 11------22-3438997158988999998999999875205999998899999999999839975-3222246999887
Q 000506 936 QA------TF-ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-LTNAMVGLPGVDG 1007 (1458)
Q Consensus 936 ~~------~~-~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~g 1007 (1458)
.. .+ ++.+|||+|+..++|.+||+|++.+...++.....+.+++.+.+.+.++.++|.+ .++..+ ..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HH
T ss_conf 6885551231255577880412417686688877578887224789999999999998876242345534880-----23
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCE
Q ss_conf 8988989999999995199789993999999999999999999998757-998999935850999986361889925939
Q 000506 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1008 lSgGqrkRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG~ 1086 (1458)
||||||||++||++|+.+|++|+|||||+|||+.++..++++++++.++ |.|||+++|++. ..+.+|++++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHH--HHHHCCEEEEEEC-CE
T ss_conf 89999999998756522788899468765469899999999999999843999999878889--9986998999989-99
Q ss_pred EEEECCC
Q ss_conf 9994799
Q 000506 1087 VIYAGPL 1093 (1458)
Q Consensus 1087 ~~y~G~~ 1093 (1458)
++..|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
T ss_conf 9995257
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=324.96 Aligned_cols=209 Identities=27% Similarity=0.324 Sum_probs=184.4
Q ss_pred CCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCC------CCEEEEECCCC
Q ss_conf 444426313056783883999985999968999999954989999964289997962577666------64089963789
Q 000506 180 KRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP------QRTCAYISQND 253 (1458)
Q Consensus 180 ~~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d 253 (1458)
+....+|+|+|+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|+++..... ++.++||+|+.
T Consensus 15 ~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~ 91 (240)
T d3dhwc1 15 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHF 91 (240)
T ss_dssp SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSC
T ss_pred CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCC
T ss_conf 81489861505788699799998999898889999875886366---773288676852087555115541664302252
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 88999999999998645016771256779944998860999983299999999872000102799999990996434532
Q 000506 254 LHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTM 333 (1458)
Q Consensus 254 ~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~ 333 (1458)
.+++.+||+|++.|+.+..+.... + ....++.+|+.+||++.+|..
T Consensus 92 ~l~~~~tv~eni~~~l~~~~~~~~--------------------~--------------~~~~v~~~L~~vgL~~~~~~~ 137 (240)
T d3dhwc1 92 NLLSSRTVFGNVALPLELDNTPKD--------------------E--------------VKRRVTELLSLVGLGDKHDSY 137 (240)
T ss_dssp CCCTTSBHHHHHHHHHHTTTCCTT--------------------H--------------HHHHHHHHHHHHSTTTTTSSC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCHH--------------------H--------------HHHHHHHHHHHCCCCHHHHCC
T ss_conf 227996499999999998499989--------------------9--------------999999999976990355489
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEE
Q ss_conf 36866888995788999999998169959798579989999999999999999988469669999807933898105879
Q 000506 334 VGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413 (1458)
Q Consensus 334 vg~~~~rGlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i 413 (1458)
+++ |||||||||+||++|+.+|++|++||||+|||+.++.++++.|+++.+.. +++++.++|+..++..++|++
T Consensus 138 ~~~-----LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHdl~~~~~~~dri 211 (240)
T d3dhwc1 138 PSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCV 211 (240)
T ss_dssp BSC-----CCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHH-CCEEEEEBSCHHHHHHHCSEE
T ss_pred HHH-----CCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHCCEE
T ss_conf 434-----99999989998640105898687446556589888567999999998646-978999838999999869999
Q ss_pred EEECCCEEEEECCHHHHH
Q ss_conf 997298299973966699
Q 000506 414 ILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 414 ~lL~~G~ivy~Gp~~~~~ 431 (1458)
++|.+|++++.|+++++.
T Consensus 212 ~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 212 AVISNGELIEQDTVSEVF 229 (240)
T ss_dssp EEEETTEEEEEEETTTTT
T ss_pred EEEECCEEEEECCHHHHH
T ss_conf 999799999987999997
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=317.53 Aligned_cols=207 Identities=25% Similarity=0.320 Sum_probs=123.0
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCC--CCCEEEEECCCCCCCCCC
Q ss_conf 442631305678388399998599996899999995498999996428999796257766--664089963789889999
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFV--PQRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~l 259 (1458)
.+++|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.+.. .++.++||+|.+..++.+
T Consensus 14 ~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~l 90 (238)
T d1vpla_ 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 90 (238)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCC
T ss_conf 999980625688489799999999999999999996698878---88799986724468398872186750015468786
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999998645016771256779944998860999983299999999872000102799999990996434532368668
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg~~~~ 339 (1458)
||.|++.|.+...+... .+ + ....+.+++.++|++..+..+++
T Consensus 91 tv~e~l~~~~~~~~~~~----------~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~~--- 133 (238)
T d1vpla_ 91 QGIEYLRFVAGFYASSS----------SE----------I--------------EEMVERATEIAGLGEKIKDRVST--- 133 (238)
T ss_dssp BHHHHHHHHHHHHCCCH----------HH----------H--------------HHHHHHHHHHHCCGGGGGSBGGG---
T ss_pred CHHHHHHHHHHHCCCCH----------HH----------H--------------HHHHHHHHHHCCCHHHHHHHHHH---
T ss_conf 67788898998617998----------99----------9--------------99999999867978888504533---
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEECCC
Q ss_conf 88995788999999998169959798579989999999999999999988469669999807933898105879997298
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL~~G 419 (1458)
+|||||||+.+|++|+.+|++++|||||+|||+.++.++.+.+++++. .+++|+.++|+.+++..++|++++|.+|
T Consensus 134 --lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~--~g~tii~~tH~l~~~~~~~drv~vl~~G 209 (238)
T d1vpla_ 134 --YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVEFLCDRIALIHNG 209 (238)
T ss_dssp --CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEEECCHHHHTTTCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEEEEEECC
T ss_conf --799898999999998659998873379889798999999999999996--5998999959899999969999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 2999739666999
Q 000506 420 QIVYQGPREKVLE 432 (1458)
Q Consensus 420 ~ivy~Gp~~~~~~ 432 (1458)
++++.|+++++.+
T Consensus 210 ~iv~~g~~~el~~ 222 (238)
T d1vpla_ 210 TIVETGTVEELKE 222 (238)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999928999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=319.73 Aligned_cols=209 Identities=22% Similarity=0.298 Sum_probs=184.1
Q ss_pred EEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECC
Q ss_conf 99952245862521342016653343011131467847809999657999644788605089679801559999895078
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 935 (1458)
++++|+++++. . ..|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------C-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 89998999949-------------9-78843378987998999998999829999999964768--88788999567346
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 1-122343899715898899999899999987520599999889999999999983997532222469998878988989
Q 000506 936 Q-ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014 (1458)
Q Consensus 936 ~-~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1014 (1458)
. ...+|.+|||+|+..++|.+||+|++.|...++... . +++++++++.++|.+..|..++ .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHH
T ss_pred CCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC---H---HHHHHHHHHHHCCHHHHHCCHH-----HCCHHHHC
T ss_conf 52165740561512111174665778888877640553---8---9999999998256555758955-----47999840
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 99999999519978999399999999999999999999875-79989999358509999863618899259399994799
Q 000506 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1015 Rl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~ 1093 (1458)
|++||++|+.+|++|+|||||+|||+.++..+++.++++.+ .|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred CHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 1403043443677144347876799899999999999998647968999749999-99996999999979-999998699
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=312.52 Aligned_cols=207 Identities=21% Similarity=0.252 Sum_probs=174.7
Q ss_pred CCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCCC-------CEEEEECCC
Q ss_conf 4444263130567838839999859999689999999549899999642899979625776666-------408996378
Q 000506 180 KRKIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ-------RTCAYISQN 252 (1458)
Q Consensus 180 ~~~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~-------~~~~yv~Q~ 252 (1458)
+....+|+|+|+.+++||+++|+|||||||||||++|+|..+|+ +|+|.++|+++....++ +.++||+|+
T Consensus 15 ~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~ 91 (230)
T d1l2ta_ 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91 (230)
T ss_dssp TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTT
T ss_pred CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECC
T ss_conf 82089871337788499799998899998216557506887777---662699999857688555123125557788041
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCC-CCC
Q ss_conf 9889999999999986450167712567799449988609999832999999998720001027999999909964-345
Q 000506 253 DLHFGEMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDI-CAD 331 (1458)
Q Consensus 253 d~~~~~lTV~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~-~~d 331 (1458)
+.+++.+||.|++.++...+..+... ..+. ...+...++.+||.+ .+|
T Consensus 92 ~~l~~~~tv~eni~~~~~~~~~~~~~-------~~~~------------------------~~~~~~~l~~~~L~~~~~~ 140 (230)
T d1l2ta_ 92 FNLIPLLTALENVELPLIFKYRGAMS-------GEER------------------------RKRALECLKMAELEERFAN 140 (230)
T ss_dssp CCCCTTSCHHHHHHHHHHTCCSSCCC-------HHHH------------------------HHHHHHHHHHTTCCGGGTT
T ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCC-------HHHH------------------------HHHHHHHHHHHCHHHHHHC
T ss_conf 24176866888775788872247899-------9999------------------------9999998876242345534
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCC
Q ss_conf 32368668889957889999999981699597985799899999999999999999884696699998079338981058
Q 000506 332 TMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFD 411 (1458)
Q Consensus 332 t~vg~~~~rGlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD 411 (1458)
..+.+ |||||||||+||++|+.+|++|++||||+|||+.++.++++.++++.+.. +++++.++|+..++ .++|
T Consensus 141 ~~p~~-----LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~-g~tii~vTHd~~~a-~~~d 213 (230)
T d1l2ta_ 141 HKPNQ-----LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED-GKTVVVVTHDINVA-RFGE 213 (230)
T ss_dssp CCGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT-CCEEEEECSCHHHH-TTSS
T ss_pred CCHHH-----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHH-CCEEEEECCCHHHH-HHCC
T ss_conf 88023-----89999999998756522788899468765469899999999999999843-99999987888999-8699
Q ss_pred EEEEECCCEEEEECCH
Q ss_conf 7999729829997396
Q 000506 412 NIILLSEGQIVYQGPR 427 (1458)
Q Consensus 412 ~i~lL~~G~ivy~Gp~ 427 (1458)
++++|.+|+++.+|+.
T Consensus 214 rv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 214 RIIYLKDGEVEREEKL 229 (230)
T ss_dssp EEEEEETTEEEEEEEC
T ss_pred EEEEEECCEEEEECCC
T ss_conf 8999989999995257
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=317.32 Aligned_cols=210 Identities=25% Similarity=0.408 Sum_probs=179.8
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCCC-CEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 30567838839999859999689999999549899999642899979625776666-40899637898899999999999
Q 000506 188 DVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ-RTCAYISQNDLHFGEMTVRETMD 266 (1458)
Q Consensus 188 ~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~Etl~ 266 (1458)
|+|+.+. +|.++|+||||||||||+++|+|.++|+ +|+|.+||.++....+. +.+|||+|++.+++.+||+|++.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 9999749-9799999799980999999997399989---62899999998869989928522523144352201557666
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 86450167712567799449988609999832999999998720001027999999909964345323686688899578
Q 000506 267 FSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQ 346 (1458)
Q Consensus 267 f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg~~~~rGlSGGq 346 (1458)
|+.+.. . +.+. ...++.+++.+||++.+|..+.. |||||
T Consensus 93 ~~l~~~--~----------~~~~------------------------~~~v~~~l~~~gl~~~~~~~~~~-----LSGG~ 131 (240)
T d2onka1 93 YGLRNV--E----------RVER------------------------DRRVREMAEKLGIAHLLDRKPAR-----LSGGE 131 (240)
T ss_dssp TTCTTS--C----------HHHH------------------------HHHHHHHHHTTTCTTTTTCCGGG-----SCHHH
T ss_pred HHHCCC--C----------HHHH------------------------HHHHHHHHHHCCCHHHHHCCHHH-----CCHHH
T ss_conf 532336--7----------7889------------------------99999999863837566579444-----89999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEECCCEEEEECC
Q ss_conf 89999999981699597985799899999999999999999884696699998079338981058799972982999739
Q 000506 347 KKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGP 426 (1458)
Q Consensus 347 kkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL~~G~ivy~Gp 426 (1458)
||||+||++|+.+|++++|||||+|||+.++.++.+.++++.+..+ ++++.++|+..++..++|++++|.+|+++..|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g-~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD-VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT-CCEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 8999998777516770675286555887999999999999987439-769998189999999699999998999999906
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 66699998865987899999889998
Q 000506 427 REKVLEFFEYMGFKCPDRKGVADFLQ 452 (1458)
Q Consensus 427 ~~~~~~~Fe~~Gf~cp~~~~~adfl~ 452 (1458)
++++.+ ++...++.|+.
T Consensus 211 ~~el~~---------~~~~~v~~fl~ 227 (240)
T d2onka1 211 LKELFS---------AKNGEVAEFLS 227 (240)
T ss_dssp HHHHHH---------SCCSSHHHHGG
T ss_pred HHHHHC---------CCCHHHHHHHC
T ss_conf 999832---------99889999857
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=311.33 Aligned_cols=214 Identities=21% Similarity=0.326 Sum_probs=190.9
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEEC
Q ss_conf 89995224586252134201665334301113146784780999965799964478860508967980155999989507
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 934 (1458)
.+..+|++..+ +++.+|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 aI~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEE-------------CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 78999589999-------------99999806256884897999999999999999999966988--7888799986724
Q ss_pred CC--CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 81--1223438997158988999998999999875205999998899999999999839975322224699988789889
Q 000506 935 NQ--ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQ 1012 (1458)
Q Consensus 935 ~~--~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGq 1012 (1458)
.. ...++.++||+|++..++.+||.|++.|.+.++. .+.++..+.++++++.++|.+..+..++ .|||||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~ 138 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGM 138 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHH
T ss_pred CCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHH
T ss_conf 46839887218675001546878667788898998617---9989999999999986797888850453-----379989
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECC
Q ss_conf 89999999995199789993999999999999999999998757998999935850999986361889925939999479
Q 000506 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGP 1092 (1458)
Q Consensus 1013 rkRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~ 1092 (1458)
|||+.||++|+.+|++|+|||||+|||+.++..++++++++++.|.||++++|+.. ++...+|++++|. +|++++.|+
T Consensus 139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~-~G~iv~~g~ 216 (238)
T d1vpla_ 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIH-NGTIVETGT 216 (238)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECC
T ss_conf 89999999986599988733798897989999999999999965998999959899-9999699999998-999999928
Q ss_pred C
Q ss_conf 9
Q 000506 1093 L 1093 (1458)
Q Consensus 1093 ~ 1093 (1458)
+
T Consensus 217 ~ 217 (238)
T d1vpla_ 217 V 217 (238)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=311.49 Aligned_cols=206 Identities=24% Similarity=0.297 Sum_probs=142.8
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCC----------------CCEE
Q ss_conf 426313056783883999985999968999999954989999964289997962577666----------------6408
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP----------------QRTC 246 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~----------------~~~~ 246 (1458)
..+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....+ ++.+
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCE
T ss_conf 99881506688699799999899982999999997476678---997799999933677520000235176799974544
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
Q ss_conf 996378988999999999998645-0167712567799449988609999832999999998720001027999999909
Q 000506 247 AYISQNDLHFGEMTVRETMDFSGR-CLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLG 325 (1458)
Q Consensus 247 ~yv~Q~d~~~~~lTV~Etl~f~~~-~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lg 325 (1458)
+||+|++.+++.+||.|++.|+.. ..+.. +.+ . ...+..+++.+|
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~~ 137 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------KHD----------A--------------RERALKYLAKVG 137 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------HHH----------H--------------HHHHHHHHHHTT
T ss_pred EEEEECHHHCCCHHCCHHHHHHHHHHCCCC----------HHH----------H--------------HHHHHHHHHHCC
T ss_conf 899833231411010213656578762999----------899----------9--------------999999999829
Q ss_pred CCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHH
Q ss_conf 9643-453236866888995788999999998169959798579989999999999999999988469669999807933
Q 000506 326 LDIC-ADTMVGDQMRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAP 404 (1458)
Q Consensus 326 L~~~-~dt~vg~~~~rGlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 404 (1458)
|.+. .+..+++ |||||||||+||++|+.+|+++++||||+|||+.++.+|.+.++++++ . +++++.++|+.+
T Consensus 138 l~~~~~~~~p~~-----LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~-g~til~vtHdl~ 210 (258)
T d1b0ua_ 138 IDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMG 210 (258)
T ss_dssp CCHHHHTSCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCCEEEECSCHH
T ss_pred CCHHHHCCCCCC-----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-C-CCCEEEEECCHH
T ss_conf 952443068220-----567788898999998439987885245556887888899876554103-6-883389948999
Q ss_pred HHHHCCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 8981058799972982999739666999
Q 000506 405 EAYDLFDNIILLSEGQIVYQGPREKVLE 432 (1458)
Q Consensus 405 e~~~lfD~i~lL~~G~ivy~Gp~~~~~~ 432 (1458)
++..++|+|++|.+|+++..|+++++..
T Consensus 211 ~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 211 FARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9998699999997999999849999983
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=313.93 Aligned_cols=220 Identities=25% Similarity=0.350 Sum_probs=167.3
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCCC----CEEEEECCCCCCCC
Q ss_conf 44263130567838839999859999689999999549899999642899979625776666----40899637898899
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ----RTCAYISQNDLHFG 257 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~ 257 (1458)
..++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....++ ..++|++|+...++
T Consensus 16 ~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~ 92 (254)
T d1g6ha_ 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK 92 (254)
T ss_dssp TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGG
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 968871217998899799999999984999999997797688---73799999966405699999833872577642478
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999986450167712567799449988609999832999999998720001027999999909964345323686
Q 000506 258 EMTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQ 337 (1458)
Q Consensus 258 ~lTV~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg~~ 337 (1458)
.+||.|++.++...++....... -.......+.+ ....++.+++.+++.+.+|+.+++
T Consensus 93 ~ltv~enl~~~~~~~~~~~~~~~-------~~~~~~~~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~- 150 (254)
T d1g6ha_ 93 EMTVLENLLIGEICPGESPLNSL-------FYKKWIPKEEE--------------MVEKAFKILEFLKLSHLYDRKAGE- 150 (254)
T ss_dssp GSBHHHHHHGGGTSTTSCHHHHH-------HHCSSCCCCHH--------------HHHHHHHHHHHTTCGGGTTSBGGG-
T ss_pred CCEEEEEEEEHHHHCCCCCHHHH-------HHHCCCCCHHH--------------HHHHHHHHHHHCCCCHHCCCCHHH-
T ss_conf 87423214301333034504566-------54213532899--------------999999998761963020595356-
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEEC
Q ss_conf 68889957889999999981699597985799899999999999999999884696699998079338981058799972
Q 000506 338 MRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417 (1458)
Q Consensus 338 ~~rGlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL~ 417 (1458)
|||||||||.||++|+.+|++++|||||+|||+.++.++++.+++++. .+++|+.++|+.+++.+++|+|++|.
T Consensus 151 ----LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~vsHdl~~~~~~~Drv~vm~ 224 (254)
T d1g6ha_ 151 ----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMF 224 (254)
T ss_dssp ----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCCSTTGGGCSEEEEEE
T ss_pred ----CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEEEEEE
T ss_conf ----991888899999999759272324397656999999999999999997--89989999476999998699999996
Q ss_pred CCEEEEECCHHHHHH
Q ss_conf 982999739666999
Q 000506 418 EGQIVYQGPREKVLE 432 (1458)
Q Consensus 418 ~G~ivy~Gp~~~~~~ 432 (1458)
+|+++..|++++..+
T Consensus 225 ~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 225 NGQIIAEGRGEEEIK 239 (254)
T ss_dssp TTEEEEEEESHHHHH
T ss_pred CCEEEEEECHHHHHH
T ss_conf 998999966899865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=313.44 Aligned_cols=204 Identities=27% Similarity=0.376 Sum_probs=118.1
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCCC----CEEEEECCCCCCCCC
Q ss_conf 4263130567838839999859999689999999549899999642899979625776666----408996378988999
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ----RTCAYISQNDLHFGE 258 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~ 258 (1458)
.++|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++....++ ..++|++|+..+++.
T Consensus 19 ~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ 95 (240)
T d1ji0a_ 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88883025788899799999999985999999996788888---038984244344660888887423556765545776
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHC-CCCCCCCCCCCCC
Q ss_conf 999999998645016771256779944998860999983299999999872000102799999990-9964345323686
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLL-GLDICADTMVGDQ 337 (1458)
Q Consensus 259 lTV~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~l-gL~~~~dt~vg~~ 337 (1458)
+||+|++.+.+......... ....+.+++.+ +|++.+|..+++
T Consensus 96 ltv~en~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~l~~~~~~~~~~- 139 (240)
T d1ji0a_ 96 LTVYENLMMGAYNRKDKEGI-----------------------------------KRDLEWIFSLFPRLKERLKQLGGT- 139 (240)
T ss_dssp SBHHHHHHGGGTTCCCSSHH-----------------------------------HHHHHHHHHHCHHHHTTTTSBSSS-
T ss_pred CCHHHHHHHHHHHCCCHHHH-----------------------------------HHHHHHHHHHHHCHHHHHHCCHHH-
T ss_conf 36999999888732788899-----------------------------------999999998741768887585433-
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEEC
Q ss_conf 68889957889999999981699597985799899999999999999999884696699998079338981058799972
Q 000506 338 MRRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLS 417 (1458)
Q Consensus 338 ~~rGlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL~ 417 (1458)
|||||||||+||++|+.+|++|+|||||+|||+.++.++++.++++++ .+++++.++|+.+++.+++|++++|.
T Consensus 140 ----LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~~tH~l~~~~~~~drv~vl~ 213 (240)
T d1ji0a_ 140 ----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEEEEEE
T ss_conf ----899999999999999829987400398867999999999999999996--89989999588999999699999998
Q ss_pred CCEEEEECCHHHHH
Q ss_conf 98299973966699
Q 000506 418 EGQIVYQGPREKVL 431 (1458)
Q Consensus 418 ~G~ivy~Gp~~~~~ 431 (1458)
+|++++.|+++++.
T Consensus 214 ~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEECCHHHHH
T ss_conf 99999984899984
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=309.39 Aligned_cols=215 Identities=21% Similarity=0.286 Sum_probs=185.1
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEEC
Q ss_conf 89995224586252134201665334301113146784780999965799964478860508967980155999989507
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 934 (1458)
.++++|++..+. ..++|+|||+.+++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i 66 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 66 (258)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCEEECCEEE
T ss_conf 699997899989-------------9998815066886997999998999829999999974766--7899779999993
Q ss_pred CCC----------------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC-C
Q ss_conf 811----------------22343899715898899999899999987520599999889999999999983997532-2
Q 000506 935 NQA----------------TFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLT-N 997 (1458)
Q Consensus 935 ~~~----------------~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~-~ 997 (1458)
... ..++.+|||+|+..+++.+||.|++.+..... ...+.++.++++.++++.++|.+.. +
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~ 144 (258)
T d1b0ua_ 67 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQG 144 (258)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred CCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 367752000023517679997454489983323141101021365657876--299989999999999998299524430
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCE
Q ss_conf 22469998878988989999999995199789993999999999999999999998757998999935850999986361
Q 000506 998 AMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1458)
Q Consensus 998 ~~vg~~~~~glSgGqrkRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~ 1077 (1458)
... ..||||||||++||++|+.+|++|++||||+|||+.++..+++.++++.++|.|||+++|++. ++...+|+
T Consensus 145 ~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adr 218 (258)
T d1b0ua_ 145 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 218 (258)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCE
T ss_conf 682-----205677888989999984399878852455568878888998765541036883389948999-99986999
Q ss_pred EEEEECCCEEEEECCC
Q ss_conf 8899259399994799
Q 000506 1078 LLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1078 illl~~gG~~~y~G~~ 1093 (1458)
+++|.+ |+++..|++
T Consensus 219 i~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 219 VIFLHQ-GKIEEEGDP 233 (258)
T ss_dssp EEEEET-TEEEEEECH
T ss_pred EEEEEC-CEEEEECCH
T ss_conf 999979-999998499
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=316.76 Aligned_cols=219 Identities=23% Similarity=0.263 Sum_probs=188.2
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEEC
Q ss_conf 89995224586252134201665334301113146784780999965799964478860508967980155999989507
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 934 (1458)
-+..+|++.++. ..++|+|||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 iL~v~nlsk~yg-------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 699977899979-------------9688712179988997999999999849999999977976--8873799999966
Q ss_pred CCCC----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8112----23438997158988999998999999875205----------999998899999999999839975322224
Q 000506 935 NQAT----FARVSGYCEQNDIHSPHVTVYESLLFSAWLRL----------SSDIDSKTRKMFVDEVMDLVELEPLTNAMV 1000 (1458)
Q Consensus 935 ~~~~----~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~----------~~~~~~~~~~~~v~~vl~~l~L~~~~~~~v 1000 (1458)
.... .++.++|++|+...++.+||.|++.+++..+. ......++..+.++++++.+++.+..|..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH
T ss_conf 40569999983387257764247887423214301333034504566542135328999999999987619630205953
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEE
Q ss_conf 69998878988989999999995199789993999999999999999999998757998999935850999986361889
Q 000506 1001 GLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1080 (1458)
Q Consensus 1001 g~~~~~glSgGqrkRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~ill 1080 (1458)
+ .||||||||+.||++|+.+|++|+|||||+|||+.++..+++.+++++++|.||++++|+.. ++.+.+|++++
T Consensus 149 ~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred H-----HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEE
T ss_conf 5-----69918888999999997592723243976569999999999999999978998999947699-99986999999
Q ss_pred EECCCEEEEECCCCC
Q ss_conf 925939999479974
Q 000506 1081 MKRGGQVIYAGPLGR 1095 (1458)
Q Consensus 1081 l~~gG~~~y~G~~~~ 1095 (1458)
|.+ |+++..|++.+
T Consensus 223 m~~-G~iv~~g~~~e 236 (254)
T d1g6ha_ 223 MFN-GQIIAEGRGEE 236 (254)
T ss_dssp EET-TEEEEEEESHH
T ss_pred EEC-CEEEEEECHHH
T ss_conf 969-98999966899
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=310.54 Aligned_cols=216 Identities=21% Similarity=0.344 Sum_probs=184.0
Q ss_pred EEEEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEE
Q ss_conf 08999522458625213420166533430111314678478099996579996447886050896798015599998950
Q 000506 854 LSLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYP 933 (1458)
Q Consensus 854 ~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~ 933 (1458)
..++.+|+++.+. ...+|+|||+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred EEEEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 0799961899989-------------9888830257888997999999999859999999967888--880389842443
Q ss_pred CCCC---CC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 7811---22-343899715898899999899999987520599999889999999999983-997532222469998878
Q 000506 934 KNQA---TF-ARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLV-ELEPLTNAMVGLPGVDGL 1008 (1458)
Q Consensus 934 ~~~~---~~-~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-~L~~~~~~~vg~~~~~gl 1008 (1458)
.... .. +..++|++|+..+++.+||+|++.+.+..+.. .+..+..++++++.+ +|.+..+..++ .|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLGG-----TL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBSS-----SS
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCHHHHHHCCHH-----HC
T ss_conf 446608888874235567655457763699999988873278----889999999999874176888758543-----38
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEE
Q ss_conf 98898999999999519978999399999999999999999999875799899993585099998636188992593999
Q 000506 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1088 (1458)
Q Consensus 1009 SgGqrkRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~ 1088 (1458)
|||||||+.||++|+.+|++|+|||||+|||+.++..+++++++++++|.||++++|+.. ++.+.+|++++|.+ |+++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv 218 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIV 218 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999999999999998299874003988679999999999999999968998999958899-99996999999989-9999
Q ss_pred EECCCCC
Q ss_conf 9479974
Q 000506 1089 YAGPLGR 1095 (1458)
Q Consensus 1089 y~G~~~~ 1095 (1458)
+.|++.+
T Consensus 219 ~~g~~~e 225 (240)
T d1ji0a_ 219 LEGKASE 225 (240)
T ss_dssp EEEEHHH
T ss_pred EECCHHH
T ss_conf 9848999
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=300.26 Aligned_cols=209 Identities=24% Similarity=0.406 Sum_probs=149.2
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 4426313056783883999985999968999999954989999964289997962577666---6408996378988999
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHFGE 258 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 258 (1458)
...+|+|+|+.+++|+.++|+||||||||||+++|+|.++|. +|+|.+||.++..... ++.++||+|++.+|+
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~- 90 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN- 90 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-
T ss_pred CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCCCCCC-
T ss_conf 960374248998499999999999998999999997357888---8899999999440024655352889824465578-
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999864501677125677994499886099998329999999987200010279999999099643453236866
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg~~~ 338 (1458)
.||+|++.++.... +.+.+.+++...+. .-.+..+....+|.+|..
T Consensus 91 ~Ti~eNi~~~~~~~-------------------------~~~~~~~~~~~~~~--------~~~i~~~~~~~~t~i~~~- 136 (241)
T d2pmka1 91 RSIIDNISLANPGM-------------------------SVEKVIYAAKLAGA--------HDFISELREGYNTIVGEQ- 136 (241)
T ss_dssp SBHHHHHCTTSTTC-------------------------CHHHHHHHHHHHTC--------HHHHTTSTTGGGSBCSTT-
T ss_pred CCCCCCCCCCCCCC-------------------------CHHHHHHHHHHHHH--------HHHHHHHHCCHHHHCCCC-
T ss_conf 40003522357554-------------------------38889999999755--------788876320134432787-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEECC
Q ss_conf 88899578899999999816995979857998999999999999999998846966999980793389810587999729
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL~~ 418 (1458)
...|||||||||+||++|+.+|++++|||||++||+.+..+|++.++++.+ +. +++.++|.... ...+|+|++|.+
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~-Tvi~itH~l~~-~~~~D~i~vl~~ 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GR-TVIIIAHRLST-VKNADRIIVMEK 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TS-EEEEECSSGGG-GTTSSEEEEEET
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC--CC-EEEEEECCHHH-HHHCCEEEEEEC
T ss_conf 886698898987544344416513556477655598999999999999858--99-89999788999-984999999989
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 82999739666999
Q 000506 419 GQIVYQGPREKVLE 432 (1458)
Q Consensus 419 G~ivy~Gp~~~~~~ 432 (1458)
|+++.+|++++++.
T Consensus 213 G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 213 GKIVEQGKHKELLS 226 (241)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999889999982
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=301.94 Aligned_cols=211 Identities=23% Similarity=0.377 Sum_probs=112.7
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCC---CCEEEEECCCCCCCCCC
Q ss_conf 426313056783883999985999968999999954989999964289997962577666---64089963789889999
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHFGEM 259 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 259 (1458)
..+|+|+|+.+++||+++|+||||||||||+++|+|.++|. +|+|.+||.++.+... ++.++||+|++.+|+ .
T Consensus 27 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 102 (251)
T d1jj7a_ 27 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-R 102 (251)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred CEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCCCCC-C
T ss_conf 97674438998499899999999984999999986143787---6899889985311013788877654045650027-6
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999998645016771256779944998860999983299999999872000102799999990996434532368668
Q 000506 260 TVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMR 339 (1458)
Q Consensus 260 TV~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg~~~~ 339 (1458)
||+|++.|+..... .. ....+++...+ . .-.+.+|.+..++.++.. .
T Consensus 103 tv~eni~~g~~~~~--~~----------------------~~~~~~~~~~~-----~---~~~i~~l~~g~~~~i~~~-~ 149 (251)
T d1jj7a_ 103 SLQENIAYGLTQKP--TM----------------------EEITAAAVKSG-----A---HSFISGLPQGYDTEVDEA-G 149 (251)
T ss_dssp BHHHHHHCSCSSCC--CH----------------------HHHHHHHHHHT-----C---HHHHHTSTTGGGCBCCSS-C
T ss_pred CHHHHHHHHHCCCC--HH----------------------HHHHHHHHHHH-----H---HHHHHHCCCCCHHHHHCC-C
T ss_conf 34655454210130--27----------------------88999999998-----9---999985612111367516-7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEECCC
Q ss_conf 88995788999999998169959798579989999999999999999988469669999807933898105879997298
Q 000506 340 RGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEG 419 (1458)
Q Consensus 340 rGlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL~~G 419 (1458)
..|||||||||+||++|+.+|++++|||||++||+.+..++.+.|+++.+..+ .+++.++|+... ...+|+|++|.+|
T Consensus 150 ~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~-~Tvi~itH~l~~-~~~aDrI~vl~~G 227 (251)
T d1jj7a_ 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS-RSVLLITQHLSL-VEQADHILFLEGG 227 (251)
T ss_dssp SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGG-CEEEEECSCHHH-HHTCSEEEEEETT
T ss_pred CCCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHCCEEEEEECC
T ss_conf 66895470489986044568707871675765685368999999999765069-899999597999-9859999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 2999739666999
Q 000506 420 QIVYQGPREKVLE 432 (1458)
Q Consensus 420 ~ivy~Gp~~~~~~ 432 (1458)
+++.+|+++++++
T Consensus 228 ~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 228 AIREGGTHQQLME 240 (251)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999889999985
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=304.01 Aligned_cols=193 Identities=23% Similarity=0.414 Sum_probs=172.6
Q ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECCC-CCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 314678478099996579996447886050896798015599998950781-1223438997158988999998999999
Q 000506 886 DVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ-ATFARVSGYCEQNDIHSPHVTVYESLLF 964 (1458)
Q Consensus 886 ~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~-~~~~~~~~yv~Q~d~~~~~lTV~E~l~f 964 (1458)
|||+.+. +|.++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...+|.+|||+|++.++|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCC--CCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-97999997999809999999973999--89628999999988699899285225231443522015576665
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 87520599999889999999999983997532222469998878988989999999995199789993999999999999
Q 000506 965 SAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044 (1458)
Q Consensus 965 ~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~ 1044 (1458)
+. + ..+.++++++++++++.++|.+..+..+. .||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32--3---36778899999999986383756657944-----48999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 999999998757-9989999358509999863618899259399994799
Q 000506 1045 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1045 ~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~ 1093 (1458)
.+++.++++.++ |.|||+++|++. ++.+.+|++++|.+ |+++..|.+
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999998743976999818999-99996999999989-999999069
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=304.71 Aligned_cols=211 Identities=26% Similarity=0.429 Sum_probs=172.3
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEEC
Q ss_conf 89995224586252134201665334301113146784780999965799964478860508967980155999989507
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 934 (1458)
.++|+|++|.++. +.+.+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.+||.+.
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEECC-----------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCEEE
T ss_conf 9299999999089-----------99603742489984999999999999989999999973578--8888999999994
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCC
Q ss_conf 81---12234389971589889999989999998752059999988999999999998399-------753222246999
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVEL-------EPLTNAMVGLPG 1004 (1458)
Q Consensus 935 ~~---~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L-------~~~~~~~vg~~~ 1004 (1458)
.. ..+++.++||+|+..++ ..||+|++.+.. ...+.++ ++++++..++ ..-.++.+|..+
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQG 137 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTT
T ss_pred CCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCC-----CCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf 4002465535288982446557-840003522357-----5543888----99999997557888763201344327878
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECC
Q ss_conf 88789889899999999951997899939999999999999999999987579989999358509999863618899259
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~glSgGqrkRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~g 1084 (1458)
..||||||||++|||+|+.+|+||+||||||+||+.++..+++.++++. +++|+|+++|+++ ....+|++++|. +
T Consensus 138 -~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~ 212 (241)
T d2pmka1 138 -AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVME-K 212 (241)
T ss_dssp -TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEE-T
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEE-C
T ss_conf -8669889898754434441651355647765559899999999999985-8998999978899--998499999998-9
Q ss_pred CEEEEECCC
Q ss_conf 399994799
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~y~G~~ 1093 (1458)
|+++..|+.
T Consensus 213 G~Iv~~G~~ 221 (241)
T d2pmka1 213 GKIVEQGKH 221 (241)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=302.53 Aligned_cols=217 Identities=23% Similarity=0.335 Sum_probs=173.6
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEEC
Q ss_conf 89995224586252134201665334301113146784780999965799964478860508967980155999989507
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 934 (1458)
.++|+|++|.++.. .+..+|+|||+.+++||++||+|+||||||||+++|+|...+ .+|+|.+||.+.
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p--~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP--TGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred EEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 69999989988999----------999767443899849989999999998499999998614378--768998899853
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 81---12234389971589889999989999998752059999988999-----99999999839975322224699988
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRK-----MFVDEVMDLVELEPLTNAMVGLPGVD 1006 (1458)
Q Consensus 935 ~~---~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~-----~~v~~vl~~l~L~~~~~~~vg~~~~~ 1006 (1458)
.. ..+++.++||+|+...++ .||+|++.|... ......+.. ....+.++ .|..-.++.++..+ .
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~~-~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEAG-S 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSSC-S
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCCC-C
T ss_conf 11013788877654045650027-634655454210----1302788999999998999998--56121113675167-6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCC
Q ss_conf 78988989999999995199789993999999999999999999998757-99899993585099998636188992593
Q 000506 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1007 glSgGqrkRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG 1085 (1458)
.||||||||++|||+|+.+|+|++||||||+||+.+...+++.++++.+. ++|+|+++|+++ ..+.+|++++|+ +|
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~-~G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLE-GG 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEE-TT
T ss_pred CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEEE-CC
T ss_conf 689547048998604456870787167576568536899999999976506989999959799--998599999998-99
Q ss_pred EEEEECCCC
Q ss_conf 999947997
Q 000506 1086 QVIYAGPLG 1094 (1458)
Q Consensus 1086 ~~~y~G~~~ 1094 (1458)
+++..|+..
T Consensus 228 ~iv~~Gt~~ 236 (251)
T d1jj7a_ 228 AIREGGTHQ 236 (251)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
T ss_conf 999988999
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=304.73 Aligned_cols=208 Identities=22% Similarity=0.345 Sum_probs=106.3
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCC---CCEEEEECCCCCCCCCCC
Q ss_conf 26313056783883999985999968999999954989999964289997962577666---640899637898899999
Q 000506 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHFGEMT 260 (1458)
Q Consensus 184 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 260 (1458)
.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+. |
T Consensus 16 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-t 91 (242)
T d1mv5a_ 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-T 91 (242)
T ss_dssp CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-E
T ss_pred CEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCCCCCC-C
T ss_conf 4142258998599999999999997999999999960989---87798899884424678887436797566545785-3
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999986450167712567799449988609999832999999998720001027999999909964345323686688
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg~~~~r 340 (1458)
|+|++.++...... . .++. +++...+.. -....+.+..+|.+|+. ..
T Consensus 92 i~eNi~~~~~~~~~--~-------------------~~~~---~~~~~~~~~--------~~~~~~~~~~~~~i~~~-g~ 138 (242)
T d1mv5a_ 92 IRENLTYGLEGDYT--D-------------------EDLW---QVLDLAFAR--------SFVENMPDQLNTEVGER-GV 138 (242)
T ss_dssp HHHHTTSCTTSCSC--H-------------------HHHH---HHHHHHTCT--------TTTTSSTTGGGCEESTT-SB
T ss_pred HHHHEECCCCCCCC--H-------------------HHHH---HHHHHHHHH--------HHHCCCCCCCCCCCCCC-CC
T ss_conf 45430124455542--3-------------------5677---899999755--------54203742101523687-89
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEECCCE
Q ss_conf 89957889999999981699597985799899999999999999999884696699998079338981058799972982
Q 000506 341 GVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQ 420 (1458)
Q Consensus 341 GlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL~~G~ 420 (1458)
.|||||||||+||++|+.+|++++|||||++||+.+..++++.++++.+ +. +++.++|....+ ..+|+|++|.+|+
T Consensus 139 ~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~-Tvi~itH~l~~~-~~~D~i~vl~~G~ 214 (242)
T d1mv5a_ 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GR-TTLVIAHRLSTI-VDADKIYFIEKGQ 214 (242)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TS-EEEEECCSHHHH-HHCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CC-EEEEEECCHHHH-HHCCEEEEEECCE
T ss_conf 8799999999999998529989996588655698899999887888717--99-899997879999-8499999998999
Q ss_pred EEEECCHHHHHH
Q ss_conf 999739666999
Q 000506 421 IVYQGPREKVLE 432 (1458)
Q Consensus 421 ivy~Gp~~~~~~ 432 (1458)
++.+|+++++++
T Consensus 215 iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 215 ITGSGKHNELVA 226 (242)
T ss_dssp ECCCSCHHHHHH
T ss_pred EEEECCHHHHHH
T ss_conf 999999999986
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.8e-45 Score=292.00 Aligned_cols=196 Identities=23% Similarity=0.330 Sum_probs=88.2
Q ss_pred EECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECCC---CCCCCEEEEECCCCCCCCCCCH
Q ss_conf 0111314678478099996579996447886050896798015599998950781---1223438997158988999998
Q 000506 882 QLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATFARVSGYCEQNDIHSPHVTV 958 (1458)
Q Consensus 882 ~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~~yv~Q~d~~~~~lTV 958 (1458)
.+|+|||+.+++||.+||+|+||||||||+++|+|...+ .+|+|.+||.+... ..+++.++||+|+..++ ..|+
T Consensus 29 ~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti 105 (253)
T d3b60a1 29 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDLREYTLASLRNQVALVSQNVHLF-NDTV 105 (253)
T ss_dssp CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEETTTBCHHHHHHTEEEECSSCCCC-SSBH
T ss_pred CEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCCCCCHHHHHHHHHEEEEEEECCCCC-CCCH
T ss_conf 635332899859999999999998599999998621688--8468987880121110665420687995025447-8620
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 999999875205999998899999999999839975-------3222246999887898898999999999519978999
Q 000506 959 YESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-------LTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFM 1031 (1458)
Q Consensus 959 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~~~~glSgGqrkRl~ia~~Lv~~p~il~L 1031 (1458)
++++.+.. +...+.+ .++++++..++.+ -.++.+|.. ...||||||||++|||+|+.+|+||+|
T Consensus 106 ~~n~~~~~----~~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~~-~~~LSGGqkQRvaiARal~~~p~ilil 176 (253)
T d3b60a1 106 ANNIAYAR----TEEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLSGGQRQRIAIARALLRDSPILIL 176 (253)
T ss_dssp HHHHHTTT----TSCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTT-SCSSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHCC----CCCCCHH----HHHHHHHHHHHHHHHHHCCCCCHHHHCCC-CCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 24332057----2208999----99999999817999973554410143488-898499999999999999549988995
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 39999999999999999999987579989999358509999863618899259399994799
Q 000506 1032 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1032 DEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~ 1093 (1458)
|||||+||+.++..+++.++++. +++|+|+++|+++ ..+.+|++++|. +|+++..|+.
T Consensus 177 DEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v~vl~-~G~Iv~~G~~ 234 (253)
T d3b60a1 177 DEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEIVVVE-DGIIVERGTH 234 (253)
T ss_dssp ETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEEEEEE-TTEEEEEECH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEE-CCEEEEECCH
T ss_conf 16444589889999999998752-2788999988799--998599999998-9999998899
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=296.32 Aligned_cols=211 Identities=26% Similarity=0.408 Sum_probs=150.7
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEEC
Q ss_conf 89995224586252134201665334301113146784780999965799964478860508967980155999989507
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 934 (1458)
.++++|++|.++. ....+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 16 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 82 (255)
T d2hyda1 16 RIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNI 82 (255)
T ss_dssp CEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEC
T ss_conf 7999988999599-----------99760644389983998999988999809999999971278--6300015399875
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCC
Q ss_conf 81---1223438997158988999998999999875205999998899999999999839975-------3222246999
Q 000506 935 NQ---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEP-------LTNAMVGLPG 1004 (1458)
Q Consensus 935 ~~---~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~~ 1004 (1458)
.. ..+++.++||+|++.+++ .||+|++.|.. + ..+++ .+.++++..++.+ -.++.+|..+
T Consensus 83 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~~g 152 (255)
T d2hyda1 83 KDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGERG 152 (255)
T ss_dssp GGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCGGG
T ss_pred CCCCHHHHHHEEEEEECCCCCCC-CCHHHHHHCCC----C-CCCHH----HHHHHHHHHCCHHHHHHCCCCCCCHHCCCC
T ss_conf 30788886341456510156899-87999985158----6-79999----999999996979999736242010333888
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECC
Q ss_conf 88789889899999999951997899939999999999999999999987579989999358509999863618899259
Q 000506 1005 VDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1084 (1458)
Q Consensus 1005 ~~glSgGqrkRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~g 1084 (1458)
..||||||||++|||+|+.+|+|++||||||+||+.++..+++.++++. .++|+|+++|+++ ....+|++++|. +
T Consensus 153 -~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l~-~ 227 (255)
T d2hyda1 153 -VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIE-N 227 (255)
T ss_dssp -TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEE-T
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEE-C
T ss_conf -9849999999999999855998999837654479779999999999875-3888999968999--998599999998-9
Q ss_pred CEEEEECCC
Q ss_conf 399994799
Q 000506 1085 GQVIYAGPL 1093 (1458)
Q Consensus 1085 G~~~y~G~~ 1093 (1458)
|+++..|+.
T Consensus 228 G~iv~~G~~ 236 (255)
T d2hyda1 228 GHIVETGTH 236 (255)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.4e-45 Score=292.76 Aligned_cols=209 Identities=24% Similarity=0.412 Sum_probs=168.4
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 4426313056783883999985999968999999954989999964289997962577666---6408996378988999
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHFGE 258 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 258 (1458)
...+|+|+|+.+++|+.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+... ++.++||+|++.+|+
T Consensus 30 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~- 105 (255)
T d2hyda1 30 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS- 105 (255)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-
T ss_pred CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCCCCCC-
T ss_conf 976064438998399899998899980999999997127863---0001539987530788886341456510156899-
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999864501677125677994499886099998329999999987200010279999999099643453236866
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg~~~ 338 (1458)
.||+||+.|+.... ..+...+|+...+. .+ .+..|....||.+|+.
T Consensus 106 ~Ti~eNi~~g~~~~-------------------------~~~~~~~al~~~~l-----~~---~i~~lp~gl~t~i~~~- 151 (255)
T d2hyda1 106 DTVKENILLGRPTA-------------------------TDEEVVEAAKMANA-----HD---FIMNLPQGYDTEVGER- 151 (255)
T ss_dssp SBHHHHHGGGCSSC-------------------------CHHHHHHHHHHTTC-----HH---HHHTSTTGGGCBCCGG-
T ss_pred CCHHHHHHCCCCCC-------------------------CHHHHHHHHHHHCC-----HH---HHHHCCCCCCCHHCCC-
T ss_conf 87999985158679-------------------------99999999999697-----99---9973624201033388-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEECC
Q ss_conf 88899578899999999816995979857998999999999999999998846966999980793389810587999729
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL~~ 418 (1458)
...||||||||++||++|+.+|++++|||||++||+.+...|.+.++++.+ +.|+| .++|.... ...+|+|++|.+
T Consensus 152 g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI-~itH~~~~-~~~~D~ii~l~~ 227 (255)
T d2hyda1 152 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTL-IVAHRLST-ITHADKIVVIEN 227 (255)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEE-EECSSGGG-TTTCSEEEEEET
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEE-EEECCHHH-HHHCCEEEEEEC
T ss_conf 898499999999999998559989998376544797799999999998753--88899-99689999-985999999989
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 82999739666999
Q 000506 419 GQIVYQGPREKVLE 432 (1458)
Q Consensus 419 G~ivy~Gp~~~~~~ 432 (1458)
|+++..|+++++++
T Consensus 228 G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 228 GHIVETGTHRELIA 241 (255)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999889999986
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=295.88 Aligned_cols=210 Identities=23% Similarity=0.413 Sum_probs=166.6
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 4426313056783883999985999968999999954989999964289997962577666---6408996378988999
Q 000506 182 KIQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVP---QRTCAYISQNDLHFGE 258 (1458)
Q Consensus 182 ~~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 258 (1458)
+.++|+|+|+.+++||.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+... ++.++||+|++.++..
T Consensus 27 ~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ 103 (253)
T d3b60a1 27 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND 103 (253)
T ss_dssp SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS
T ss_pred CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECCCCCCC
T ss_conf 976353328998599999999999985999999986216888---46898788012111066542068799502544786
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999864501677125677994499886099998329999999987200010279999999099643453236866
Q 000506 259 MTVRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQM 338 (1458)
Q Consensus 259 lTV~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg~~~ 338 (1458)
|+++++.++.... . . .+.+.+++...+. .+. ++ .|+...||.+++.
T Consensus 104 -ti~~n~~~~~~~~-~-~----------------------~~~i~~a~~~~~l-----~~~-i~--~l~~gl~t~~~~~- 149 (253)
T d3b60a1 104 -TVANNIAYARTEE-Y-S----------------------REQIEEAARMAYA-----MDF-IN--KMDNGLDTIIGEN- 149 (253)
T ss_dssp -BHHHHHHTTTTSC-C-C----------------------HHHHHHHHHTTTC-----HHH-HH--HSTTGGGSBCCTT-
T ss_pred -CHHHHHHHCCCCC-C-C----------------------HHHHHHHHHHHHH-----HHH-HH--HCCCCCHHHHCCC-
T ss_conf -2024332057220-8-9----------------------9999999999817-----999-97--3554410143488-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEECC
Q ss_conf 88899578899999999816995979857998999999999999999998846966999980793389810587999729
Q 000506 339 RRGVSGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 339 ~rGlSGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL~~ 418 (1458)
...|||||||||+||++|+.+|++++|||||++||+.+...|++.|+++.+ +. +++.++|....+ ..+|+|++|.+
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~-Tvi~itH~l~~~-~~~D~v~vl~~ 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NR-TSLVIAHRLSTI-EQADEIVVVED 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TS-EEEEECSCGGGT-TTCSEEEEEET
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CC-EEEEEECCHHHH-HHCCEEEEEEC
T ss_conf 898499999999999999549988995164445898899999999987522--78-899998879999-85999999989
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 82999739666999
Q 000506 419 GQIVYQGPREKVLE 432 (1458)
Q Consensus 419 G~ivy~Gp~~~~~~ 432 (1458)
|+++.+|+++++++
T Consensus 226 G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 226 GIIVERGTHSELLA 239 (253)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999889999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=298.79 Aligned_cols=211 Identities=30% Similarity=0.478 Sum_probs=171.7
Q ss_pred EEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECC
Q ss_conf 99952245862521342016653343011131467847809999657999644788605089679801559999895078
Q 000506 856 LAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKN 935 (1458)
Q Consensus 856 l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~ 935 (1458)
++++|++|+++ +.+.+|+|||+.++||+++||+|+||||||||+++|+|...+ .+|+|.+||.+..
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCC--CCCEEEECCEEEC
T ss_conf 79998899879------------998414225899859999999999999799999999996098--9877988998844
Q ss_pred C---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCCC
Q ss_conf 1---12234389971589889999989999998752059999988999999999998399-------7532222469998
Q 000506 936 Q---ATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVEL-------EPLTNAMVGLPGV 1005 (1458)
Q Consensus 936 ~---~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L-------~~~~~~~vg~~~~ 1005 (1458)
. ..+++.++||+|++.+++. ||+|++.+.. ....+.++ +++.++..++ .+..++.+|..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGL----EGDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCT----TSCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCC----CCCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 24678887436797566545785-3454301244----55542356----77899999755542037421015236878-
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCC
Q ss_conf 87898898999999999519978999399999999999999999999875799899993585099998636188992593
Q 000506 1006 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1085 (1458)
Q Consensus 1006 ~glSgGqrkRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG 1085 (1458)
..||||||||++|||+|+.+|+||+||||||+||+.++..+++.++++. +|+|+|+++|+++ ....+|++++|. +|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIE-KG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEE-TT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEE-CC
T ss_conf 9879999999999999852998999658865569889999988788871-7998999978799--998499999998-99
Q ss_pred EEEEECCCC
Q ss_conf 999947997
Q 000506 1086 QVIYAGPLG 1094 (1458)
Q Consensus 1086 ~~~y~G~~~ 1094 (1458)
+++..|+..
T Consensus 214 ~iv~~G~~~ 222 (242)
T d1mv5a_ 214 QITGSGKHN 222 (242)
T ss_dssp EECCCSCHH
T ss_pred EEEEECCHH
T ss_conf 999999999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6e-44 Score=283.75 Aligned_cols=198 Identities=23% Similarity=0.299 Sum_probs=155.2
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 42631305678388399998599996899999995498999996428999796257766664089963789889999999
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVR 262 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 262 (1458)
.+||+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++| .++|++|++++++. ||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMPG-TIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCSE-EHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCCCCCC-EEE
T ss_conf 76773759998599999999899982999999995797478---82899999----------99998164302676-032
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998645016771256779944998860999983299999999872000102799999990996434532368668889
Q 000506 263 ETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV 342 (1458)
Q Consensus 263 Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg~~~~rGl 342 (1458)
|++.|+.... .. +++...+++.+ ......+....++.++.. ...|
T Consensus 115 eni~~~~~~~--~~---------------------~~~~~~~~~~~-----------~~~i~~l~~~~~~~~~~~-~~~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYD--EY---------------------RYKSVVKACQL-----------QQDITKFAEQDNTVLGEG-GVTL 159 (281)
T ss_dssp HHHTTTSCCC--HH---------------------HHHHHHHHTTC-----------HHHHTTSTTGGGCEECTT-CTTS
T ss_pred CCCCCCCCCC--CH---------------------HHHHHHHHHHH-----------HHHHHHCHHHHHHHHHHH-CCCC
T ss_conf 1420333456--05---------------------79999999776-----------999984612332355554-2377
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEECCCEEE
Q ss_conf 95788999999998169959798579989999999999999999988469669999807933898105879997298299
Q 000506 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIV 422 (1458)
Q Consensus 343 SGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL~~G~iv 422 (1458)
||||||||++|++|+.+|++++|||||++||+.+..++++.+..... .++| ++.++|..+ ....+|+|++|.+|+++
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~t-vi~itH~~~-~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKT-RILVTSKME-HLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSE-EEEECSCHH-HHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCE-EEEEECHHH-HHHHCCEEEEEECCEEE
T ss_conf 99999999999999869635133385544898999999999998862-8999-999925289-99859999999899999
Q ss_pred EECCHHHHHH
Q ss_conf 9739666999
Q 000506 423 YQGPREKVLE 432 (1458)
Q Consensus 423 y~Gp~~~~~~ 432 (1458)
++|+++++..
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHC
T ss_conf 9878999960
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-43 Score=281.32 Aligned_cols=193 Identities=24% Similarity=0.400 Sum_probs=128.0
Q ss_pred ECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECCC---CCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 111314678478099996579996447886050896798015599998950781---12234389971589889999989
Q 000506 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQ---ATFARVSGYCEQNDIHSPHVTVY 959 (1458)
Q Consensus 883 iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~---~~~~~~~~yv~Q~d~~~~~lTV~ 959 (1458)
.|++||+.+++||++||+||||||||||+++|+|..+ .+|+|.++|.+... ...+...+|++|+.......++.
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHH
T ss_conf 5558888994898999998999809999999948879---9559999999998699899986402451213577442098
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEEEE
Q ss_conf 99999875205999998899999999999839975322224699988789889899999999951-------99789993
Q 000506 960 ESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVA-------NPSIIFMD 1032 (1458)
Q Consensus 960 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~Lv~-------~p~il~LD 1032 (1458)
+.+.+... .+.+.+.++++++.+++.+..+..+. .||||||||+.||++|+. +|+||+||
T Consensus 91 ~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH--------DKTRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS--------CTTCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHCCC--------HHHHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 87641001--------46689999999986598767676844-----569988999999999985171338998899971
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 9999999999999999999987579989999358509999863618899259399994799
Q 000506 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPL 1093 (1458)
Q Consensus 1033 EPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~ 1093 (1458)
|||+|||..++..+++.+++++++|.|||+++|++. ++.+.+|++++|+ +|++++.|+.
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~ 216 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRR 216 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCH
T ss_conf 877778989999999999999867999999967799-9999799999997-9989998899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-42 Score=274.80 Aligned_cols=198 Identities=26% Similarity=0.344 Sum_probs=168.0
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCCC---CEEEEECCCCCCCCCCC
Q ss_conf 263130567838839999859999689999999549899999642899979625776666---40899637898899999
Q 000506 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQ---RTCAYISQNDLHFGEMT 260 (1458)
Q Consensus 184 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lT 260 (1458)
..|+++|+.+++||+++|+||||||||||+++|+|.. ++ +|+|.++|+++....++ ...+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CC---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCC
T ss_conf 1555888899489899999899980999999994887-99---5599999999986998999864024512135774420
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999986450167712567799449988609999832999999998720001027999999909964345323686688
Q 000506 261 VRETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRR 340 (1458)
Q Consensus 261 V~Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg~~~~r 340 (1458)
+.+.+.+...-+ . .....+.+++.++|++..+..+.+
T Consensus 89 v~~~~~~~~~~~---~------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~---- 125 (231)
T d1l7vc_ 89 VWHYLTLHQHDK---T------------------------------------RTELLNDVAGALALDDKLGRSTNQ---- 125 (231)
T ss_dssp HHHHHHHHCSCT---T------------------------------------CHHHHHHHHHHTTCTTTTTSBGGG----
T ss_pred HHHHHHHCCCHH---H------------------------------------HHHHHHHHHHHCCCHHHHCCCHHH----
T ss_conf 988764100146---6------------------------------------899999999865987676768445----
Q ss_pred CCCHHHHHHHHHHHHHHC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEE
Q ss_conf 899578899999999816-------9959798579989999999999999999988469669999807933898105879
Q 000506 341 GVSGGQKKRVTTGEMLVG-------PAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNI 413 (1458)
Q Consensus 341 GlSGGqkkRvsia~~L~~-------~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i 413 (1458)
|||||||||++|++|+. +|++++|||||+|||..++..+.+.+++++. .+++|+.++|+.+++.+++|++
T Consensus 126 -LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~--~g~tii~vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 126 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRA 202 (231)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH--TTCEEEECCCCHHHHHHHCSBC
T ss_pred -CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEE
T ss_conf -6998899999999998517133899889997187777898999999999999986--7999999967799999979999
Q ss_pred EEECCCEEEEECCHHHHH
Q ss_conf 997298299973966699
Q 000506 414 ILLSEGQIVYQGPREKVL 431 (1458)
Q Consensus 414 ~lL~~G~ivy~Gp~~~~~ 431 (1458)
++|.+|++++.|+++++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHH
T ss_conf 999799899988999981
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-42 Score=276.05 Aligned_cols=188 Identities=22% Similarity=0.384 Sum_probs=151.5
Q ss_pred CEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 30111314678478099996579996447886050896798015599998950781122343899715898899999899
Q 000506 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYE 960 (1458)
Q Consensus 881 ~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 960 (1458)
+++|+|||+.+++||++||+||||||||||+++|+|... +.+|.|.++|. ++||+|+..+++ .||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCS-EEHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE----------EEEEECCCCCCC-CEEEC
T ss_conf 767737599985999999998999829999999957974--78828999999----------999816430267-60321
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH-------HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 9999875205999998899999999999-------839975322224699988789889899999999951997899939
Q 000506 961 SLLFSAWLRLSSDIDSKTRKMFVDEVMD-------LVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDE 1033 (1458)
Q Consensus 961 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~-------~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~Lv~~p~il~LDE 1033 (1458)
++.|.. ...... .+++++ ...+.+..++.++..+ ..||||||||++|||+|+.+|+||+|||
T Consensus 116 ni~~~~------~~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGV------SYDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTS------CCCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTTC-TTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred CCCCCC------CCCCHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 420333------456057----99999997769999846123323555542-3779999999999999986963513338
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCCC
Q ss_conf 99999999999999999998757998999935850999986361889925939999479974
Q 000506 1034 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGR 1095 (1458)
Q Consensus 1034 PTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~~~ 1095 (1458)
||++||+.+...+++.+......++|+|+++|+++ ....+|++++|. +|++++.|+..+
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~-~G~i~~~Gt~~e 243 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILILH-QGSSYFYGTFSE 243 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEE-TTEEEEEECHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH--HHHHCCEEEEEE-CCEEEEECCHHH
T ss_conf 55448989999999999988628999999925289--998599999998-999999878999
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.3e-40 Score=260.73 Aligned_cols=196 Identities=18% Similarity=0.270 Sum_probs=140.1
Q ss_pred EEEEEEEEEEEECCHHHHHCCCCCCCCEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEEC
Q ss_conf 89995224586252134201665334301113146784780999965799964478860508967980155999989507
Q 000506 855 SLAFHHVNYSVDMPAEMKAQGIEEDRLQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPK 934 (1458)
Q Consensus 855 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~ 934 (1458)
.++++|+++.++ +.+|+|+|+.+++|++++|+||||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEEEC--------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEH
T ss_conf 599998999939--------------928842088985998999999999719999999966205--6778899998962
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 81122343899715898899999899999987520599999889999999999983997532222469998878988989
Q 000506 935 NQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRK 1014 (1458)
Q Consensus 935 ~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1014 (1458)
.. .+..++|++|+..+...+|++|++.+.+.++... .+. ..+.+.++.+++.+... .+ ..|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~-~~-----~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNK----NEIMDALESVEVLDLKK-KL-----GELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCTTS-BG-----GGSCHHHHH
T ss_pred HH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-CCH----HHHHHHHHHCCCCCCCC-CC-----CCCCCCHHH
T ss_conf 67--3670899950135788828999999999754886-379----99999998748856301-26-----868971888
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEEC
Q ss_conf 999999995199789993999999999999999999998757998999935850999986361889925
Q 000506 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1083 (1458)
Q Consensus 1015 Rl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~ 1083 (1458)
|+.||++|+.+|++++|||||+|||..++..+++.++++.+++.++++++|+. .+.+|.+..|.+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH----HHHCCHHHHEEE
T ss_conf 89999988649989998686201699999999999999986799999999162----544161234010
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.5e-39 Score=253.79 Aligned_cols=184 Identities=18% Similarity=0.261 Sum_probs=151.9
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 42631305678388399998599996899999995498999996428999796257766664089963789889999999
Q 000506 183 IQILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGEMTVR 262 (1458)
Q Consensus 183 ~~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 262 (1458)
++||+|+|+.+++|++++|+||||||||||+++|+|.++|. +|+|.+||+++.+. +..++|++|+..+...+|+.
T Consensus 14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~ 88 (200)
T d1sgwa_ 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVE 88 (200)
T ss_dssp SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHHH--CCCEEEEEECCCCCCCCCHH
T ss_conf 92884208898599899999999971999999996620567---78899998962673--67089995013578882899
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998645016771256779944998860999983299999999872000102799999990996434532368668889
Q 000506 263 ETMDFSGRCLGVGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGV 342 (1458)
Q Consensus 263 Etl~f~~~~~~~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg~~~~rGl 342 (1458)
|++.+.+...+.....+ .+...++.+++.+. +..+++ |
T Consensus 89 ~~l~~~~~~~~~~~~~~------------------------------------~~~~~l~~~~~~~~-~~~~~~-----L 126 (200)
T d1sgwa_ 89 DYLKAVASLYGVKVNKN------------------------------------EIMDALESVEVLDL-KKKLGE-----L 126 (200)
T ss_dssp HHHHHHHHHTTCCCCHH------------------------------------HHHHHHHHTTCCCT-TSBGGG-----S
T ss_pred HHHHHHHHHCCCCCCHH------------------------------------HHHHHHHHCCCCCC-CCCCCC-----C
T ss_conf 99999997548863799------------------------------------99999987488563-012686-----8
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEECC
Q ss_conf 9578899999999816995979857998999999999999999998846966999980793389810587999729
Q 000506 343 SGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSE 418 (1458)
Q Consensus 343 SGGqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL~~ 418 (1458)
||||||||.+|++++.+|++++|||||+|||..++..+++.++++.+. +++++++.||+. +++|.+..|.+
T Consensus 127 SgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECHH----HHCCHHHHEEE
T ss_conf 971888899999886499899986862016999999999999999867-999999991625----44161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.41 E-value=5.4e-15 Score=105.81 Aligned_cols=80 Identities=18% Similarity=0.091 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHCEEEEEECCCE
Q ss_conf 89889899999999951997899939999999999999999999987-57998999935850999986361889925939
Q 000506 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1086 (1458)
Q Consensus 1008 lSgGqrkRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~-~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~ 1086 (1458)
+++|++++..+++++..+|+++++|||+...+ ........+.+.. +.+.++++++|+.+ .....|++..+. +|+
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~ 156 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHCCCCCEEEEEECCHH--HHHHHCEEEEEE-CCE
T ss_conf 53201378999999740997423027773100--4579999999875057978999974477--898636599871-999
Q ss_pred EEEECC
Q ss_conf 999479
Q 000506 1087 VIYAGP 1092 (1458)
Q Consensus 1087 ~~y~G~ 1092 (1458)
++.-++
T Consensus 157 i~~v~~ 162 (178)
T d1ye8a1 157 LIELTP 162 (178)
T ss_dssp EEECCT
T ss_pred EEEECC
T ss_conf 999899
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.40 E-value=4.2e-14 Score=100.36 Aligned_cols=157 Identities=16% Similarity=0.137 Sum_probs=92.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCCCCEEEEECC--CCC--CCCCCCHHHHHHHHHHHCC
Q ss_conf 999985999968999999954989999964289997962577666640899637--898--8999999999998645016
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQ--NDL--HFGEMTVRETMDFSGRCLG 273 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q--~d~--~~~~lTV~Etl~f~~~~~~ 273 (1458)
..+|.||||||||||+++|+|.+++. .|.+...+........+ .++..+ .+. .....+..+. .+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~-- 70 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKR--TGFRIITTEGKKKIFSSKFFTSK----KLV-- 70 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------C--CEEEEEETTCCEEEEEETTCCCS----SEE--
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCC---CCEEEECCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH----HHH--
T ss_conf 89999899938999999998148888---64699877132888876--53112336677788754113455----443--
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 77125677994499886099998329999999987200010279999999099643453236866888995788999999
Q 000506 274 VGTRYEMLAEISRREKEAGIKPDPEIDAYMKATALAGQKTSLATDYVLKLLGLDICADTMVGDQMRRGVSGGQKKRVTTG 353 (1458)
Q Consensus 274 ~~~~~~~~~~l~r~ek~~~i~pd~~id~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dt~vg~~~~rGlSGGqkkRvsia 353 (1458)
.++ ..+..+ ..+++|+++|..++
T Consensus 71 --~~~--------------------------------------------------~~~~~~-----~~~~~~~~~~~~l~ 93 (178)
T d1ye8a1 71 --GSY--------------------------------------------------GVNVQY-----FEELAIPILERAYR 93 (178)
T ss_dssp --TTE--------------------------------------------------EECHHH-----HHHHHHHHHHHHHH
T ss_pred --HHH--------------------------------------------------HCCCCH-----HHHHHHHHHHHHHH
T ss_conf --023--------------------------------------------------037625-----66532013789999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEEECCCEEEEECC
Q ss_conf 9981699597985799899999999999999999884696699998079338981058799972982999739
Q 000506 354 EMLVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIILLSEGQIVYQGP 426 (1458)
Q Consensus 354 ~~L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~lL~~G~ivy~Gp 426 (1458)
.++..+|+++++|||.... .....+...+.+.....+.+ ++.++|.. +...+.|++..+.+|+++.-++
T Consensus 94 ~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~~-il~~~h~~-~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 94 EAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNVN-VVATIPIR-DVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTSE-EEEECCSS-CCSHHHHHHHTCTTCEEEECCT
T ss_pred HHHHCCCCCEEECCCCCCC--HHHHHHHHHHHHHHCCCCCE-EEEEECCH-HHHHHHCEEEEEECCEEEEECC
T ss_conf 9974099742302777310--04579999999875057978-99997447-7898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.14 E-value=4.1e-09 Score=69.68 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEE
Q ss_conf 7898898999999999----5199789993999999999999999999998757998999935850999986361889
Q 000506 1007 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1080 (1458)
Q Consensus 1007 glSgGqrkRl~ia~~L----v~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~ill 1080 (1458)
.+|.|||+...++..+ ..++++++.|||-++|++.....+.+.+++.++ ..-|++|+|.| .+.+.+|++..
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~ 293 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHG 293 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCH--HHHHHCCCEEE
T ss_conf 02577766777776655654226744554320335797899999999998554-88799998988--99973242899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.02 E-value=8.6e-10 Score=73.86 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEE
Q ss_conf 87898898999999999----51997899939999999999999999999987579989999358509999863618899
Q 000506 1006 DGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1081 (1458)
Q Consensus 1006 ~glSgGqrkRl~ia~~L----v~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl 1081 (1458)
..+|||||.++++|.-+ ..++++++||||+++||......+.+.|++++..+.-+|+|+|+| .+.+..|+.+..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878--999736617999
Q ss_pred E
Q ss_conf 2
Q 000506 1082 K 1082 (1458)
Q Consensus 1082 ~ 1082 (1458)
.
T Consensus 409 ~ 409 (427)
T d1w1wa_ 409 Y 409 (427)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.99 E-value=8e-09 Score=67.92 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEE
Q ss_conf 8899578899999999----816995979857998999999999999999998846966999980793389810587999
Q 000506 340 RGVSGGQKKRVTTGEM----LVGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 340 rGlSGGqkkRvsia~~----L~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~l 415 (1458)
.-+|+|||+...++.. ...++++++.|||-++|++.....+.+.|+.... +..++++.| +|++.+.+|+++.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTH--sp~~~~~~d~~~~ 293 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITH--NKIVMEAADLLHG 293 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECC--CTTGGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEEC--CHHHHHHCCCEEE
T ss_conf 102577766777776655654226744554320335797899999999998554--887999989--8899973242899
Q ss_pred --ECCC
Q ss_conf --7298
Q 000506 416 --LSEG 419 (1458)
Q Consensus 416 --L~~G 419 (1458)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEECC
T ss_conf 999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=7.9e-08 Score=61.80 Aligned_cols=74 Identities=16% Similarity=0.332 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEE
Q ss_conf 88995788999999998----16995979857998999999999999999998846966999980793389810587999
Q 000506 340 RGVSGGQKKRVTTGEML----VGPAKVLLMDEISTGLDSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEAYDLFDNIIL 415 (1458)
Q Consensus 340 rGlSGGqkkRvsia~~L----~~~~~illlDEptsGLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~i~l 415 (1458)
.-+|||||.++++|-.+ ..+++++++|||.++||+.....+.+.|+++.. ..+-++.++|. |++.+.+|..+.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I~iTH~-~~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEEEEECC-HHHHHHCCCEEE
T ss_conf 332230479999999999954799977999688777899999999999999728--99889999587-899973661799
Q ss_pred E
Q ss_conf 7
Q 000506 416 L 416 (1458)
Q Consensus 416 L 416 (1458)
.
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.13 E-value=3.7e-05 Score=45.38 Aligned_cols=49 Identities=10% Similarity=0.176 Sum_probs=32.6
Q ss_pred HHCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 519978999399999999999999-999999875799899993585099998
Q 000506 1023 VANPSIIFMDEPTSGLDARAAAIV-MRTVRNTVDTGRTVVCTIHQPSIDIFE 1073 (1458)
Q Consensus 1023 v~~p~il~LDEPTsGLD~~sa~~i-~~~l~~~~~~g~tvi~t~Hqps~~i~~ 1073 (1458)
+.+.+++++||..+|-|+.....+ ...++.+.+.+..+++++|.. ++.+
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~ 161 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTA 161 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHT
T ss_pred CCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHH
T ss_conf 8977278554545686233200258888888862376137865202--3332
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=98.01 E-value=1.2e-05 Score=48.30 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=16.2
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 31305678388399998599996899999995
Q 000506 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALA 217 (1458)
Q Consensus 186 L~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~La 217 (1458)
|+++.+=+.||++++|.|+||+|||||+.-++
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 88874697898089999479997999999999
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.98 E-value=0.0001 Score=42.71 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=29.5
Q ss_pred HHCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHC-CCEEEEEECCCC
Q ss_conf 5199789993999999999999999-999998757-998999935850
Q 000506 1023 VANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDT-GRTVVCTIHQPS 1068 (1458)
Q Consensus 1023 v~~p~il~LDEPTsGLD~~sa~~i~-~~l~~~~~~-g~tvi~t~Hqps 1068 (1458)
..+.+++++||+.+|-++.....+. ..++.+... +..+++|+|...
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 546608853222358774566678987645432045442898524687
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.91 E-value=0.00016 Score=41.54 Aligned_cols=157 Identities=16% Similarity=0.126 Sum_probs=71.9
Q ss_pred ECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 11131467847809999657999644788605089679801559999895078112234389971589889999989999
Q 000506 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESL 962 (1458)
Q Consensus 883 iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 962 (1458)
-|+++.+-++||+++.|.|++|+||||++.-++-..- ...| ..+.|+. ..++..+..
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a--~~~g---------------~~v~~~s------~E~~~~~~~ 80 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMG---------------KKVGLAM------LEESVEETA 80 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHH--HTSC---------------CCEEEEE------SSSCHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH--HHCC---------------CCEEEEE------ECCCHHHHH
T ss_conf 6888746978980899994799979999999997265--5336---------------6345764------011113577
Q ss_pred H-HHH-HHHCCCCCCHHHHH-----HHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 9-987-52059999988999-----9999999983-99753222246999887898898999999999519978999399
Q 000506 963 L-FSA-WLRLSSDIDSKTRK-----MFVDEVMDLV-ELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP 1034 (1458)
Q Consensus 963 ~-f~a-~lr~~~~~~~~~~~-----~~v~~vl~~l-~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~Lv~~p~il~LDEP 1034 (1458)
. +.+ ....+.......+. ...+++.+.+ +...... . +........+.....-...--.+|+++++|--
T Consensus 81 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l 156 (277)
T d1cr2a_ 81 EDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHL-Y---DSFAEAETDRLLAKLAYMRSGLGCDVIILDHI 156 (277)
T ss_dssp HHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEE-E---CCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred HHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEE-E---CCCCCHHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 6999986458710101222221456778889887403521466-2---14331068999998654321367625997054
Q ss_pred -----CCCC--CHHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf -----9999--999999999999998757-9989999358
Q 000506 1035 -----TSGL--DARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1066 (1458)
Q Consensus 1035 -----TsGL--D~~sa~~i~~~l~~~~~~-g~tvi~t~Hq 1066 (1458)
..+- +......++..+++++++ +++|++++|-
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 157 SIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp EC----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 2120346544306778999999999765016552031035
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.90 E-value=0.00029 Score=39.87 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEEECCHHHHHHC
Q ss_conf 8899999999816995979857998999999999999-999998846966999980793389810
Q 000506 346 QKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICK-YMKQMVHVLEITTIVSLLQPAPEAYDL 409 (1458)
Q Consensus 346 qkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~-~l~~~~~~~~~t~ii~i~q~~~e~~~l 409 (1458)
|-+|+.-.-...+...++++||+.+|-|+.....+.. .+..+.. .+..++++.|+ .++.++
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~--~eL~~l 162 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHY--FELTAL 162 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCC--HHHHTC
T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH-CCCCEEEEEEC--HHHHHH
T ss_conf 678898775028977278554545686233200258888888862-37613786520--233322
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.66 E-value=0.0011 Score=36.30 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=19.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 67838839999859999689999999549
Q 000506 191 GLVKPSRMTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 191 ~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
|=+.+|++++|.|+||+|||||+.-++-.
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 89869849999918999999999999999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.58 E-value=2.7e-05 Score=46.22 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=25.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEE
Q ss_conf 8839999859999689999999549899999642899
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIK 231 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~ 231 (1458)
+|+.++++|+||.|||||+|+|.|...-. .|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH---CCCCC
T ss_conf 69808997889877888877305355501---06842
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=0.0015 Score=35.54 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=26.9
Q ss_pred HCCCCEEEEECCCC---C--CCHHHHHHHHHHHHHHHHHCCCEEEEEEECCH
Q ss_conf 16995979857998---9--99999999999999998846966999980793
Q 000506 357 VGPAKVLLMDEIST---G--LDSSTTFQICKYMKQMVHVLEITTIVSLLQPA 403 (1458)
Q Consensus 357 ~~~~~illlDEpts---G--LDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~ 403 (1458)
..+++++++|..+. + -|.....++++.|+.++...+ ++++.+||..
T Consensus 130 ~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~-~~vi~v~H~~ 180 (274)
T d1nlfa_ 130 AEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTG-CSIVFLHHAS 180 (274)
T ss_dssp HTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHC-CEEEEEEEC-
T ss_pred CCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC-CCEEHHHHCC
T ss_conf 26765896281354226652322568999988777764479-7540131005
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=0.0016 Score=35.36 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEEE
Q ss_conf 788999999998169959798579989999999999999-99998846966999980
Q 000506 345 GQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICKY-MKQMVHVLEITTIVSLL 400 (1458)
Q Consensus 345 GqkkRvsia~~L~~~~~illlDEptsGLDs~t~~~i~~~-l~~~~~~~~~t~ii~i~ 400 (1458)
.|-+|++-.-...+...++++||+.+|-++.....+... ++.+.......++++.|
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH 162 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATH 162 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 999999999974546608853222358774566678987645432045442898524
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.0019 Score=34.84 Aligned_cols=149 Identities=19% Similarity=0.211 Sum_probs=72.0
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 84780999965799964478860508967980155999989507811223438997158988999998999999875205
Q 000506 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFSAWLRL 970 (1458)
Q Consensus 891 i~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~a~lr~ 970 (1458)
+.||+++.|.|++|+|||||+.-|+.....|.. .. +.... -...+-|+..++... .+.+-+ .+..
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~----~~-~~~~~---~~~~vl~~~~E~~~~---~~~~Rl--~~~~-- 90 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPD----LL-EVGEL---PTGPVIYLPAEDPPT---AIHHRL--HALG-- 90 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCC----TT-CCCCC---CCCCEEEEESSSCHH---HHHHHH--HHHH--
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC----CC-CCCCC---CCCCEEEEECCCHHH---HHHHHH--HHHH--
T ss_conf 558958999928999899999999999976997----21-11235---787368985123499---999999--9986--
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC---C--CCHHHHHH
Q ss_conf 999998899999999999839975322224699988789889899999999951997899939999---9--99999999
Q 000506 971 SSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS---G--LDARAAAI 1045 (1458)
Q Consensus 971 ~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~Lv~~p~il~LDEPTs---G--LD~~sa~~ 1045 (1458)
...+.... ......+.+.+..+... ....-... .--.....++.++++|.-+. | -|......
T Consensus 91 -~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~ 157 (274)
T d1nlfa_ 91 -AHLSAEER----QAVADGLLIQPLIGSLP-----NIMAPEWF---DGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 157 (274)
T ss_dssp -TTSCHHHH----HHHHHHEEECCCTTSCC-----CTTSHHHH---HHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred -HCCCHHHH----HCCCCCCEECCCCCCCC-----HHHHHHHH---HHHHHHCCCCCEEECCCHHHHCCCCCCCHHHHHH
T ss_conf -23686665----31233323214567420-----35789999---9988752676589628135422665232256899
Q ss_pred HHHHHHHHHHC-CCEEEEEECCC
Q ss_conf 99999998757-99899993585
Q 000506 1046 VMRTVRNTVDT-GRTVVCTIHQP 1067 (1458)
Q Consensus 1046 i~~~l~~~~~~-g~tvi~t~Hqp 1067 (1458)
+++.++.++.. +++|+++.|..
T Consensus 158 ~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 158 VIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 99887777644797540131005
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.39 E-value=5.5e-05 Score=44.35 Aligned_cols=34 Identities=24% Similarity=0.537 Sum_probs=26.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 780999965799964478860508967980155999
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDIS 928 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~ 928 (1458)
+|..++++|+||+|||||+|.|.+... ...|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~--~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC--CC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH--HHCCCCC
T ss_conf 698089978898778888773053555--0106842
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.34 E-value=8e-05 Score=43.33 Aligned_cols=27 Identities=41% Similarity=0.560 Sum_probs=21.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999968999999954989
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
.|++.+|.|||||||||+.+.|+.++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.22 E-value=3e-05 Score=46.00 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=25.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEE
Q ss_conf 8839999859999689999999549899999642899
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIK 231 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~ 231 (1458)
+|..++++|+||.|||||+|+|.|...-. .|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH---HCCCC
T ss_conf 35649998778734878987515176764---03555
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=7.9e-05 Score=43.36 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999689999999549899
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLDD 222 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~~ 222 (1458)
+++|.|++|||||||++.|+.++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.15 E-value=0.00011 Score=42.38 Aligned_cols=26 Identities=31% Similarity=0.631 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83999985999968999999954989
Q 000506 196 SRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 196 Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
|++..|+|||||||||+.+.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=9.7e-05 Score=42.82 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=17.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88399998599996899999995498
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
.+.+..|+|||||||||+.+.|+.++
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 87189998999989899999999986
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.96 E-value=0.00014 Score=41.80 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=19.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999859999689999999549899
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKLDD 222 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l~~ 222 (1458)
++..|.|++|||||||++.|..++..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 09999809999899999999999986
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.96 E-value=6.9e-05 Score=43.73 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=26.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 780999965799964478860508967980155999
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDIS 928 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~ 928 (1458)
.|..++++|+||+|||||+|.|.+... ...|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH--HHHCCCC
T ss_conf 356499987787348789875151767--6403555
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.94 E-value=0.00029 Score=39.88 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=19.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3883999985999968999999954989
Q 000506 194 KPSRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 194 ~~Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
++|.+..|.|+|||||||+-++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.94 E-value=0.00025 Score=40.35 Aligned_cols=26 Identities=38% Similarity=0.506 Sum_probs=22.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999859999689999999549899
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKLDD 222 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l~~ 222 (1458)
..+++.||||+|||||.++|++.+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.94 E-value=0.00015 Score=41.72 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=19.0
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 46784780999965799964478860508967
Q 000506 888 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 888 s~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
...++.+.-+.|.|+.||||||||++|++..+
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 99998378889994035662578999865301
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.00035 Score=39.37 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=23.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 678388399998599996899999995498
Q 000506 191 GLVKPSRMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 191 ~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
|=+.+|+++.|.||||||||||+.-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 898599799999589999999999999999
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.92 E-value=0.00021 Score=40.83 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999968999999954989
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
+..+|.||+|||||||.+.|+.++.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=1.4e-05 Score=48.08 Aligned_cols=35 Identities=29% Similarity=0.230 Sum_probs=25.7
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 313056783883999985999968999999954989
Q 000506 186 LKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 186 L~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
+++.++.+.+| +++|+|||||||||+|.+|.-.+.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 70279974998-089988999987999999999966
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.00034 Score=39.44 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=15.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88399998599996899999995498
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
+|.+..|+||||+|||||.+.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98099999999999999999998639
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.90 E-value=0.00024 Score=40.36 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=23.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 80999965799964478860508967
Q 000506 894 GVLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 894 Ge~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
|.++.|+||||||||||.+.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.0038 Score=33.03 Aligned_cols=27 Identities=44% Similarity=0.762 Sum_probs=19.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999968999999954989
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
+.+-+++.||||+|||++.++||..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 888678668998882289999999829
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=7.1e-05 Score=43.66 Aligned_cols=27 Identities=44% Similarity=0.733 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 399998599996899999995498999
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKLDDD 223 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l~~~ 223 (1458)
+.+.|.||||+|||||++.++..+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 699998899971999999999999977
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.84 E-value=0.0003 Score=39.78 Aligned_cols=25 Identities=40% Similarity=0.736 Sum_probs=19.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999968999999954989
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
.+.+|.|||||||||+.+.|+..++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.84 E-value=0.00033 Score=39.57 Aligned_cols=27 Identities=37% Similarity=0.617 Sum_probs=22.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999968999999954989
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
+|-..+|.|||||||||+.+.|+-+++
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 988899982899988999999999858
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.81 E-value=0.00037 Score=39.24 Aligned_cols=21 Identities=24% Similarity=0.484 Sum_probs=10.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+|+|+||+|||||+++|.|+
T Consensus 26 I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHCCC
T ss_conf 999899998799999985298
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.79 E-value=0.00042 Score=38.95 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999968999999954989
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
+++|+|++|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.75 E-value=0.00052 Score=38.35 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=19.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999859999689999999549
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
+++.|.|+|||||||+.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.75 E-value=0.01 Score=30.37 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=16.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHH
Q ss_conf 67847809999657999644788605
Q 000506 889 GVFRPGVLTALMGVSGAGKTTLMDVL 914 (1458)
Q Consensus 889 ~~i~pGe~~ai~G~sGaGKTTLl~~L 914 (1458)
|-+.+|+++.|.|++|+|||+|..-+
T Consensus 21 GGi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 21 GGLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 89969839999947999999999999
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.74 E-value=0.00043 Score=38.85 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=15.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83999985999968999999954989
Q 000506 196 SRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 196 Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
.++..|.|+|||||||+.+.|+.++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.73 E-value=0.00036 Score=39.35 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=22.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 388399998599996899999995498
Q 000506 194 KPSRMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 194 ~~Ge~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
+.+.+..|+|||||||||+-+.|+-++
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 678289998999998799999999986
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.69 E-value=0.00062 Score=37.88 Aligned_cols=26 Identities=46% Similarity=0.654 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88399998599996899999995498
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
+|-...++|||||||||.-+.|+-++
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 96389998999998899999999986
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.68 E-value=0.00049 Score=38.53 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 78099996579996447886050896
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.|+++.|.|++||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.00043 Score=38.86 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
+++|.|++|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.65 E-value=0.00055 Score=38.21 Aligned_cols=22 Identities=59% Similarity=0.727 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
.+|.|||||||||+.+.|+-++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9898999999899999999997
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.64 E-value=0.00085 Score=37.05 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=26.0
Q ss_pred EEC-EEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 313-05678388399998599996899999995498
Q 000506 186 LKD-VSGLVKPSRMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 186 L~~-vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
|+. +.|-+++|+++.|.|+||+|||||..-++-..
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 997207986288599999179999899999999999
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.63 E-value=0.00048 Score=38.57 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999965799964478860508967
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
.++|+|++|+|||||++.|.|+..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~~ 48 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRKN 48 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999989999879999998529874
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.63 E-value=0.00072 Score=37.49 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998599996899999995498
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
.+.+|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999997
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.61 E-value=0.00058 Score=38.07 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=21.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8399998599996899999995498
Q 000506 196 SRMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 196 Ge~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
-.+..|+|||||||||+.+.|+-++
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.61 E-value=0.00078 Score=37.28 Aligned_cols=30 Identities=33% Similarity=0.378 Sum_probs=24.0
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 567838839999859999689999999549
Q 000506 190 SGLVKPSRMTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 190 s~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.|=+++|+++.|.||||||||||..-++-.
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 799869969999838999889999999998
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.00056 Score=38.15 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=23.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 780999965799964478860508967
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
.|.++.|+||||+|||||++.|.-+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.61 E-value=0.0026 Score=34.06 Aligned_cols=24 Identities=54% Similarity=0.844 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999968999999954989
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
-+++.||||+|||+|.++|+..+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.56 E-value=0.014 Score=29.56 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=26.7
Q ss_pred EEECE-EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 63130-5678388399998599996899999995
Q 000506 185 ILKDV-SGLVKPSRMTLLLGPPGAGKTTLLMALA 217 (1458)
Q Consensus 185 iL~~v-s~~i~~Ge~~~ilGp~GsGKSTLL~~La 217 (1458)
-|+++ .|=+++|+++.|.|+||+|||+|..-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 7988556899698399999479999999999999
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.48 E-value=0.00059 Score=38.01 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=26.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC-CCCEEEEEEECCE
Q ss_conf 999965799964478860508967-9801559999895
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRKT-GGYTEGDISISGY 932 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~~-~~~~~G~i~i~G~ 932 (1458)
.++|+|.+|||||||+..|..+.. .|..-|.|..+++
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 99998099998999999999999867983799983167
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.47 E-value=0.0013 Score=35.95 Aligned_cols=28 Identities=36% Similarity=0.517 Sum_probs=22.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 5678388399998599996899999995
Q 000506 190 SGLVKPSRMTLLLGPPGAGKTTLLMALA 217 (1458)
Q Consensus 190 s~~i~~Ge~~~ilGp~GsGKSTLL~~La 217 (1458)
.|=+++|++++|.||||||||||..-++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=3.1e-05 Score=45.89 Aligned_cols=32 Identities=28% Similarity=0.262 Sum_probs=26.8
Q ss_pred CCCCEEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 113146784780999965799964478860508
Q 000506 884 LRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1458)
Q Consensus 884 L~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g 916 (1458)
.++.++.+.+| ++.|.|+|||||||+|++|.-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 70279974998-089988999987999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.00054 Score=38.25 Aligned_cols=23 Identities=48% Similarity=0.583 Sum_probs=10.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 80999965799964478860508
Q 000506 894 GVLTALMGVSGAGKTTLMDVLAG 916 (1458)
Q Consensus 894 Ge~~ai~G~sGaGKTTLl~~L~g 916 (1458)
|.++.|.|++||||||+-+.|+-
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 96999889999999999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.43 E-value=0.001 Score=36.52 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999859999689999999549899
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKLDD 222 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l~~ 222 (1458)
++.+|.|+|||||||+.+.|+-++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 88999899998989999999999987
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.43 E-value=0.001 Score=36.49 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996899999995498
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
...|+|||||||||..+.|+-++
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.41 E-value=0.00091 Score=36.87 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996899999995498
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
.++|+|+|++|||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.41 E-value=0.0011 Score=36.31 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=17.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 883999985999968999999954
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAG 218 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG 218 (1458)
+-++++++|+|||||||+.+.++-
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.41 E-value=0.00096 Score=36.71 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999968999999954989
Q 000506 199 TLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
..|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.40 E-value=0.00091 Score=36.84 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
.+++|+|++|||||+++|.|+.
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999988999999996898
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.38 E-value=0.00094 Score=36.76 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
..|+|||||||||+.+.|+-++
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.00095 Score=36.73 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 478099996579996447886050896
Q 000506 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 892 ~pGe~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.00094 Score=36.77 Aligned_cols=27 Identities=37% Similarity=0.397 Sum_probs=19.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999968999999954989
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
.....+|.||||||||||++.|...+.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 832897438999989999999999997
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.34 E-value=0.00099 Score=36.64 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=22.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999968999999954989
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
|+.-.+++||||+|||.|.++||..+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 986699989999888899999862132
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.32 E-value=0.0053 Score=32.17 Aligned_cols=23 Identities=48% Similarity=0.746 Sum_probs=11.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996899999995498
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
-.++.||||+|||+|.+++|+.+
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHHHH
T ss_conf 57887899876304778878771
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.30 E-value=0.0014 Score=35.67 Aligned_cols=21 Identities=43% Similarity=0.727 Sum_probs=11.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+|+|++|+|||||++.|+|.
T Consensus 3 V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999899999999677
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.29 E-value=0.0012 Score=36.20 Aligned_cols=25 Identities=48% Similarity=0.765 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999968999999954989
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
...++.||||+||||+.++||..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4499987999988899999999987
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.28 E-value=0.001 Score=36.56 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 999965799964478860508967980155999
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRKTGGYTEGDIS 928 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~ 928 (1458)
.+++.|+.|||||||++.|......+..-+.|.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn 34 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 34 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 899991899839999999999884387689996
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.27 E-value=0.00078 Score=37.25 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=10.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+|+|+|++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.27 E-value=0.0013 Score=35.96 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996899999995498
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
..+|+|.+|+|||||+|+|.|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.25 E-value=0.0012 Score=36.18 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 478099996579996447886050896
Q 000506 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 892 ~pGe~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
+.|.++.|.|++||||||+-+.|+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.0011 Score=36.37 Aligned_cols=24 Identities=46% Similarity=0.683 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999968999999954989
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
...|.|||||||||+-+.|+-++.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.24 E-value=0.0014 Score=35.71 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996899999995498
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
..+|+|||||||||+-+.|+-++
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.22 E-value=0.0014 Score=35.71 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
..|+|||||||||+.+.|+-++
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998799999999987
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.22 E-value=0.0015 Score=35.58 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
.+|+|.+|+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999997899999995888
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.20 E-value=0.0012 Score=36.21 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
-++|+|++|+|||||++.|.|++
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.20 E-value=0.00091 Score=36.86 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579996447886050896
Q 000506 897 TALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
+||+|++++|||||++.|+|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.19 E-value=0.0012 Score=36.22 Aligned_cols=80 Identities=21% Similarity=0.311 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCC----------CHHHHHHHHHHHHHH---H-HCCCEEEEEECCCCHHHHHHHC
Q ss_conf 8989999999995199789993999999----------999999999999998---7-5799899993585099998636
Q 000506 1011 EQRKRLTIAVELVANPSIIFMDEPTSGL----------DARAAAIVMRTVRNT---V-DTGRTVVCTIHQPSIDIFEAFD 1076 (1458)
Q Consensus 1011 GqrkRl~ia~~Lv~~p~il~LDEPTsGL----------D~~sa~~i~~~l~~~---~-~~g~tvi~t~Hqps~~i~~~fD 1076 (1458)
.++-|-.+..+-...|.|+++||--.=+ .......+..++..+ . +.+.-+|+|++.|. .+ |
T Consensus 86 ~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-~l----d 160 (265)
T d1r7ra3 86 EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD-II----D 160 (265)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCT-TT----S
T ss_pred HHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCH-HC----C
T ss_conf 899999999998639843568754632455787678873799999999999962867779989999179922-27----9
Q ss_pred EEEEEECC--CEEEEECCCCCC
Q ss_conf 18899259--399994799742
Q 000506 1077 ELLLMKRG--GQVIYAGPLGRQ 1096 (1458)
Q Consensus 1077 ~illl~~g--G~~~y~G~~~~~ 1096 (1458)
.-+. ..| .+.++.+++...
T Consensus 161 ~al~-r~gRf~~~i~~~~p~~~ 181 (265)
T d1r7ra3 161 PAIL-RPGRLDQLIYIPLPDEK 181 (265)
T ss_dssp CGGG-SSTTSEEEEECCCCCCH
T ss_pred HHHH-CCCCCCEEEEECCHHHH
T ss_conf 9780-78776479995660788
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.18 E-value=0.0017 Score=35.13 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999968999999954989
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
.+.+++|.|||||||+.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.17 E-value=0.0017 Score=35.25 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=10.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
++++|++|+|||||+++|.|.
T Consensus 11 V~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999778
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.0016 Score=35.42 Aligned_cols=24 Identities=42% Similarity=0.774 Sum_probs=13.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 809999657999644788605089
Q 000506 894 GVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 894 Ge~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
|-.++++|++++|||||++.|.|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.0022 Score=34.51 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=22.7
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 56783883999985999968999999954
Q 000506 190 SGLVKPSRMTLLLGPPGAGKTTLLMALAG 218 (1458)
Q Consensus 190 s~~i~~Ge~~~ilGp~GsGKSTLL~~LaG 218 (1458)
.|=+++|+++.|.|+||+|||+|...++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69976897999988998878899999999
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0012 Score=36.03 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=21.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 78099996579996447886050896
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
+..-+.+.||+|+|||+|.+.|+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHC
T ss_conf 88867866899888228999999982
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.14 E-value=0.0017 Score=35.20 Aligned_cols=24 Identities=38% Similarity=0.611 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999968999999954989
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
-..|+|||||||+||++.|+-+.+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.13 E-value=0.0018 Score=35.10 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999968999999954989
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
+.+|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.13 E-value=0.0017 Score=35.16 Aligned_cols=22 Identities=45% Similarity=0.791 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
..++|||||||||+.+.|+-++
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999996
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=96.10 E-value=0.0024 Score=34.25 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=18.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8399998599996899999995498
Q 000506 196 SRMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 196 Ge~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
...+.|.||||+|||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.0022 Score=34.44 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=32.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCCCCEEEEECCCCCCCCC
Q ss_conf 9999859999689999999549899999642899979625776666408996378988999
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFGE 258 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 258 (1458)
+.+|-|++||||||+.+.|...+... . ....+..++++|.|.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~---~--------------~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW---P--------------EHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS---T--------------TCCCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH---C--------------CCCCEEEEEEEEEECCC
T ss_conf 99996899998768999999997304---6--------------89965999521568984
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.09 E-value=0.0018 Score=34.98 Aligned_cols=22 Identities=68% Similarity=0.987 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
..|+|||||||||+-+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999799999999998
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.08 E-value=0.0019 Score=34.95 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=22.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8099996579996447886050896
Q 000506 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 894 Ge~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
+-.+|++|.+|+|||||++.|.|..
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.0022 Score=34.52 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=19.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999968999999954989
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
+...|+||+|+||+||++.|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.08 E-value=0.0015 Score=35.45 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=22.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 80999965799964478860508967
Q 000506 894 GVLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 894 Ge~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
.-.+||+|.+|+|||||+|.|.|...
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 71799989999978999999958886
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.07 E-value=0.0016 Score=35.33 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
-+.+.||+|+|||+|.++|++..
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0017 Score=35.17 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
..++|||||||||..+.|+-++
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998799999899999999986
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.06 E-value=0.026 Score=27.86 Aligned_cols=153 Identities=18% Similarity=0.141 Sum_probs=75.4
Q ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHCCCC-CCCCEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 14678478099996579996447886050896-79801559999895078112234389971589889999989999998
Q 000506 887 VSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYTEGDISISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLLFS 965 (1458)
Q Consensus 887 vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~-~~~~~~G~i~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 965 (1458)
+.|-+.+|.++.|.|++|+|||+|..-++-.. ..+. ...|+.-+ .+..+.....
T Consensus 19 l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~-------------------~~~~is~e------~~~~~~~~~~ 73 (242)
T d1tf7a2 19 CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKE-------------------RAILFAYE------ESRAQLLRNA 73 (242)
T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-------------------CEEEEESS------SCHHHHHHHH
T ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCCEEECC------CCHHHHHHHH
T ss_conf 5689869849999918999999999999999987232-------------------44112126------7999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHCCCEEEEECCCC---CCCHH
Q ss_conf 75205999998899999999999839975322224699988789889899999999-951997899939999---99999
Q 000506 966 AWLRLSSDIDSKTRKMFVDEVMDLVELEPLTNAMVGLPGVDGLSTEQRKRLTIAVE-LVANPSIIFMDEPTS---GLDAR 1041 (1458)
Q Consensus 966 a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~-Lv~~p~il~LDEPTs---GLD~~ 1041 (1458)
.. .. .+.. +. ...+.....+... ......+. .-.|... --.+|.+++.|--+. +.+..
T Consensus 74 ~~--~~--~~~~-------~~-~~~~~~~~~~~~~-----~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~ 135 (242)
T d1tf7a2 74 YS--WG--MDFE-------EM-ERQNLLKIVCAYP-----ESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNN 135 (242)
T ss_dssp HT--TS--CCHH-------HH-HHTTSEEECCCCG-----GGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHH
T ss_pred HH--CC--CCHH-------HH-HHCCCEEEEEEEC-----CHHHHHHH-HHHHHHHHHHCCCCEEEEECCHHHHCCCCHH
T ss_conf 98--29--9869-------98-5458617997300-----01017999-9999999984088533220431430489999
Q ss_pred HHHHHHHHHHHHH-HCCCEEEEEECCC---------CHHHHHHHCEEEEEE
Q ss_conf 9999999999987-5799899993585---------099998636188992
Q 000506 1042 AAAIVMRTVRNTV-DTGRTVVCTIHQP---------SIDIFEAFDELLLMK 1082 (1458)
Q Consensus 1042 sa~~i~~~l~~~~-~~g~tvi~t~Hqp---------s~~i~~~fD~illl~ 1082 (1458)
........+.+++ +.+.+++++.|.. +..+....|.++.|.
T Consensus 136 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 136 AFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 999999999999998698399998567512554457764046421699999
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.06 E-value=0.0019 Score=34.84 Aligned_cols=23 Identities=48% Similarity=0.665 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999968999999954989
Q 000506 199 TLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
..|+|+|||||||+.+.||-++.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999988999999999839
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.05 E-value=0.0018 Score=35.02 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 478099996579996447886050896
Q 000506 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 892 ~pGe~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.+|-.++|.|++||||||+.+.|+.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.0025 Score=34.21 Aligned_cols=24 Identities=46% Similarity=0.699 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998599996899999995498
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
=-.+++|++++|||||++.|.|.-
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 899998999998999999996888
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.0022 Score=34.47 Aligned_cols=24 Identities=46% Similarity=0.635 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999968999999954989
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
+.+|.|||||||+|+-+.|+-++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.03 E-value=0.0014 Score=35.78 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=20.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83999985999968999999954989
Q 000506 196 SRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 196 Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
-.-+++.||||+|||++.++||..+.
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 80799889699988999999862010
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.02 E-value=0.0013 Score=35.86 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
++|+|++++|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.01 E-value=0.0019 Score=34.94 Aligned_cols=24 Identities=46% Similarity=0.706 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999968999999954989
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
=.++.||||+|||++.++++....
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 468766998883089999998748
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.0018 Score=35.06 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999657999644788605089
Q 000506 897 TALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
++|+|.+|+|||||++.|.|.
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999979999899999999589
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.99 E-value=0.0021 Score=34.57 Aligned_cols=25 Identities=52% Similarity=0.798 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999689999999549899
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLDD 222 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~~ 222 (1458)
.+++.||||+||||+.++|+..+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 4898799997388999999850388
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.98 E-value=0.0019 Score=34.94 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999965799964478860508967
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
.++++|++|+|||||++.|+|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.98 E-value=0.0017 Score=35.16 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=22.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 0999965799964478860508967
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
-.++|+|.+|+|||||+|.|.|+..
T Consensus 33 l~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 33 LTILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 4899989999869999999858984
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.98 E-value=0.0019 Score=34.89 Aligned_cols=22 Identities=50% Similarity=0.717 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
..|+|||||||+||.+.|+-+.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.96 E-value=0.0027 Score=33.99 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=14.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.94 E-value=0.0028 Score=33.90 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999689999999549
Q 000506 198 MTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
..+++|.+++|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.94 E-value=0.0017 Score=35.22 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099996579996447886050896
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
..++|.|++|+|||||.+.|+.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.94 E-value=0.0017 Score=35.19 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999965799964478860508967
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
.++|+|++|||||||++.|.+...
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999889999999967999
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.94 E-value=0.0022 Score=34.55 Aligned_cols=24 Identities=54% Similarity=0.834 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999968999999954989
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
-+++.||||+||||+.+++++.+.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 389889799878889999999849
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.93 E-value=0.0024 Score=34.27 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999968999999954989
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
-..++|+|||||||+-+.||-++.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 889988999988999999999949
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.92 E-value=0.0025 Score=34.20 Aligned_cols=22 Identities=59% Similarity=0.912 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
.++.||||+||||+.++++..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.90 E-value=0.0025 Score=34.12 Aligned_cols=21 Identities=33% Similarity=0.294 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+|+|++.+|||||+++|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.90 E-value=0.0027 Score=33.91 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999968999999954989
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
..+|-|||||||||.-+.|+-++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.89 E-value=0.0019 Score=34.95 Aligned_cols=24 Identities=42% Similarity=0.422 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999968999999954989
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
-.+|+|++|+|||||++.|.+...
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999898999999967887
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.89 E-value=0.0019 Score=34.88 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=26.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 467847809999657999644788605089
Q 000506 888 SGVFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 888 s~~i~pGe~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.|-+.+|+++.|.|++|+|||||..-++..
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 589859979999958999999999999999
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.89 E-value=0.0024 Score=34.26 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996899999995498
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
..+|+|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.87 E-value=0.0017 Score=35.23 Aligned_cols=26 Identities=35% Similarity=0.687 Sum_probs=21.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999859999689999999549899
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKLDD 222 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l~~ 222 (1458)
.+..|.|+|||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.85 E-value=0.0027 Score=33.96 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996899999995498
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
-.+|+|++|+|||||++.|.+.-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0021 Score=34.56 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++|+|.+++|||||++.|.+.+
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.82 E-value=0.0021 Score=34.61 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999657999644788605089
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
-++||-|++|||||||.+.|+..
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89997898878999999999998
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.81 E-value=0.0017 Score=35.19 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999968999999954989
Q 000506 199 TLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
..++|+|||||||+-+.|+-++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.81 E-value=0.0026 Score=34.06 Aligned_cols=23 Identities=48% Similarity=0.534 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996899999995498
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
-.+++|+|++|||||++.|.+.-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.78 E-value=0.00097 Score=36.67 Aligned_cols=26 Identities=38% Similarity=0.532 Sum_probs=23.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999859999689999999549899
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKLDD 222 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l~~ 222 (1458)
.-+++.||||+|||||.+.+++.+++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 70899889985299999999873798
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.78 E-value=0.0027 Score=33.97 Aligned_cols=21 Identities=43% Similarity=0.534 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+++|++|+|||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.78 E-value=0.0022 Score=34.51 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99965799964478860508967
Q 000506 897 TALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
+.|+||||||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.77 E-value=0.0018 Score=35.08 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579996447886050896
Q 000506 897 TALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
+||+|.+++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.0027 Score=33.92 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 0999965799964478860508967
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
..+.|+||||+||+||++.|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.0044 Score=32.62 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=16.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 6784780999965799964478860508
Q 000506 889 GVFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1458)
Q Consensus 889 ~~i~pGe~~ai~G~sGaGKTTLl~~L~g 916 (1458)
|-+.+|.++-|.|++|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.73 E-value=0.0021 Score=34.67 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=28.5
Q ss_pred EEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 05678388399998599996899999995498999
Q 000506 189 VSGLVKPSRMTLLLGPPGAGKTTLLMALAGKLDDD 223 (1458)
Q Consensus 189 vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~~ 223 (1458)
+...++.+.-.+|.|+.||||||||++|.+.+++.
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999837888999403566257899986530145
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.71 E-value=0.0034 Score=33.32 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
.+++|++|+|||||++.|.|..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHCCCC
T ss_conf 9999999989999999980899
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.68 E-value=0.003 Score=33.70 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0999965799964478860508
Q 000506 895 VLTALMGVSGAGKTTLMDVLAG 916 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g 916 (1458)
.++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.63 E-value=0.004 Score=32.87 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=29.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCCCCEEEEECCCCCCCC
Q ss_conf 999985999968999999954989999964289997962577666640899637898899
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHFG 257 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~ 257 (1458)
+.+|-|++||||||+.+.|+-.+... + + . .....+..++++|.|.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~----~-~-------~--~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQN----E-V-------D--YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG----G-S-------C--GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHH----C-C-------C--CCCCCEEEEECCCCCCC
T ss_conf 99998999787999999999996410----1-3-------4--57884399934653224
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.63 E-value=0.003 Score=33.71 Aligned_cols=44 Identities=30% Similarity=0.486 Sum_probs=31.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCCCCEEEEECCC
Q ss_conf 9999859999689999999549899999642899979625776666408996378
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQN 252 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~ 252 (1458)
=.+++||+|+|||-|.+.||+.++- -=+..++...+ .+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEEE------ECCEEECC
T ss_conf 4799899998899999999987389-----88986255114------11111044
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.62 E-value=0.0027 Score=33.96 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099996579996447886050896
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
-.++|+|++|+|||||++.|.+..
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789999999989899999996788
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.62 E-value=0.0045 Score=32.58 Aligned_cols=28 Identities=39% Similarity=0.451 Sum_probs=22.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8839999859999689999999549899
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKLDD 222 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l~~ 222 (1458)
+...++|.||||+||||+++.++..+..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8881688898999899999999999754
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.60 E-value=0.0049 Score=32.35 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=18.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88399998599996899999995498
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
.|.+..+.|.|||||||+.+.|+-++
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98699998999999899999999887
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.60 E-value=0.0042 Score=32.75 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=12.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 839999859999689999999549
Q 000506 196 SRMTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 196 Ge~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
++.++|.||+|+|||||++.++-.
T Consensus 29 ~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 987999869998299999999997
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.57 E-value=0.0033 Score=33.44 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099996579996447886050896
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++.|.|++||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 089998999999899999999980
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.57 E-value=0.0038 Score=33.05 Aligned_cols=23 Identities=48% Similarity=0.541 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999968999999954989
Q 000506 199 TLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
++++|.+|+|||||++.+.+.-.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999899999999967987
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.56 E-value=0.0037 Score=33.09 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 80999965799964478860508967
Q 000506 894 GVLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 894 Ge~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
..++.|.|++||||||+-+.|+.+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.0019 Score=34.94 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998599996899999995498
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
-..+++|+|++|||||+++|.|.-
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=95.55 E-value=0.0026 Score=34.10 Aligned_cols=28 Identities=39% Similarity=0.411 Sum_probs=22.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3883999985999968999999954989
Q 000506 194 KPSRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 194 ~~Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
+.+..+++.||||+|||++.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.54 E-value=0.0031 Score=33.62 Aligned_cols=22 Identities=45% Similarity=0.604 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579996447886050896
Q 000506 897 TALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
+.|+||||||||||.+.|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.53 E-value=0.0042 Score=32.76 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999689999999549
Q 000506 198 MTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
-.+++|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999668
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.0037 Score=33.10 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
++||-|++||||||+-+.|+...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999787999999999996
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.47 E-value=0.0051 Score=32.25 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=19.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3883999985999968999999954989
Q 000506 194 KPSRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 194 ~~Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
+.|.+.++-|+.||||||+.+.|+..+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.46 E-value=0.0034 Score=33.33 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.+.|+|++||||||+-+.|+-+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.43 E-value=0.0048 Score=32.42 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999689999999549
Q 000506 198 MTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
..+|+|++.+|||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.0016 Score=35.36 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=30.1
Q ss_pred ECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCC-CCCEEEEEEEC
Q ss_conf 1113146784780999965799964478860508967-98015599998
Q 000506 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYTEGDISIS 930 (1458)
Q Consensus 883 iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~-~~~~~G~i~i~ 930 (1458)
+|+.+.-.-...-.+||.|+.|||||||++.|..... .|..-+-+.+|
T Consensus 43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavD 91 (327)
T d2p67a1 43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 91 (327)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 9998653169832897438999989999999999997569833220377
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.0051 Score=32.25 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099996579996447886050896
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
-++||.|++||||||+-+.|....
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL 104 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 899996899998768999999997
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.0037 Score=33.12 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.+.|.|++|+|||||+..++...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899971999999999999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.35 E-value=0.0024 Score=34.22 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=29.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC-CCCCEEEEEEECC
Q ss_conf 478099996579996447886050896-7980155999989
Q 000506 892 RPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYTEGDISISG 931 (1458)
Q Consensus 892 ~pGe~~ai~G~sGaGKTTLl~~L~g~~-~~~~~~G~i~i~G 931 (1458)
...-.++|.|+.|||||||++.|.... ..|..-|-|.+|-
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDp 89 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 89 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 98159861179988899999999998763687513443465
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.34 E-value=0.0024 Score=34.30 Aligned_cols=28 Identities=43% Similarity=0.389 Sum_probs=24.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8839999859999689999999549899
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKLDD 222 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l~~ 222 (1458)
.|....+.|+|||||||+-+.|+-++..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~ 45 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLVC 45 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9969998899999999999999999974
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.30 E-value=0.0055 Score=32.05 Aligned_cols=22 Identities=50% Similarity=0.963 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
.++-||||+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.27 E-value=0.02 Score=28.59 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=15.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8399998599996899999995498
Q 000506 196 SRMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 196 Ge~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
..+.+++||+|+||||.+--||-++
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8689998999998899999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.0041 Score=32.84 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=22.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999968999999954989
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
.+.+.+|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.18 E-value=0.0069 Score=31.46 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=34.7
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEE
Q ss_conf 99999519978999399999999999999999999875799899993585099998636188
Q 000506 1018 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1079 (1458)
Q Consensus 1018 ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~il 1079 (1458)
+..+|=.+|++++..|.. |..++...+ +.+.+|..|+.|+|-.+ .+..++|++
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl~ 272 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRLR 272 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCC--HHHHHHHHH
T ss_conf 999984138889845768---759999999----99724985899833676--676654321
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.18 E-value=0.0074 Score=31.28 Aligned_cols=28 Identities=32% Similarity=0.429 Sum_probs=21.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8839999859999689999999549899
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKLDD 222 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l~~ 222 (1458)
.|.+.++-|+.||||||+.+.|+..+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.14 E-value=0.0065 Score=31.62 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
++|+|.|.+|||||+++|+|--
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 7688999998999999997889
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.13 E-value=0.0048 Score=32.41 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
-+||+|..+||||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.11 E-value=0.0061 Score=31.79 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999968999999954989
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
-+.+|-|+.||||||+++.|+..++
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.10 E-value=0.0051 Score=32.24 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.08 E-value=0.0086 Score=30.87 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=14.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8399998599996899999995498
Q 000506 196 SRMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 196 Ge~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
+...+++||+|+||||.+--||-.+
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7799998999998899999999999
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.07 E-value=0.0064 Score=31.66 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999657999644788605089
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.++.|+||+||||||+-+.|+..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48999899999889999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.03 E-value=0.0061 Score=31.78 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099996579996447886050896
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.+++|.|++||||||+.+.|+.+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 889998999989899999999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.01 E-value=0.0051 Score=32.26 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.+.|+|++|+|||||++.|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.01 E-value=0.0056 Score=31.99 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999965799964478860508967
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
.++|+|.+|+|||||++.+.+...
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999899999999967987
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.01 E-value=0.0048 Score=32.41 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999968999999954989
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
+..+.||||+||||++++++-.+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899678999899999999999987
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.01 E-value=0.0076 Score=31.18 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999968999999954989
Q 000506 199 TLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
.++-||||+||||+.++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.99 E-value=0.0076 Score=31.20 Aligned_cols=22 Identities=50% Similarity=0.945 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
+++.||+|+||||+.++++..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899877558999999985
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.98 E-value=0.024 Score=28.09 Aligned_cols=34 Identities=29% Similarity=0.281 Sum_probs=21.5
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 63130567838839999859999689999999549
Q 000506 185 ILKDVSGLVKPSRMTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 185 iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.++.. ...-.|.-+++.|++|+|||||...|.-+
T Consensus 5 ~~H~~-~v~~~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGV-LLEVFGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEE-EEEETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEE-EEEECCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 17899-99999999999818999989999999985
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.90 E-value=0.0056 Score=31.99 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
-++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.88 E-value=0.007 Score=31.42 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=26.4
Q ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 1467847809999657999644788605089
Q 000506 887 VSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 887 vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
++|-+.+|+++.|.|++|+||||+..-++-.
T Consensus 27 l~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 27 LGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp TTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 0798628859999917999989999999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.86 E-value=0.0081 Score=31.04 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.85 E-value=0.0048 Score=32.43 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=30.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCCCCEEEEECCCCCCC
Q ss_conf 99998599996899999995498999996428999796257766664089963789889
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHF 256 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~ 256 (1458)
+.+|-|++||||||+.+.|...+... | -.++.++|++.|-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~----~---------------v~~~iI~~Dsfyr 45 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE----G---------------VKAVSIEGDAFHR 45 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH----T---------------CCEEEEEGGGGBS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----C---------------CCEEEEECCCCCC
T ss_conf 99998999780999999999997156----9---------------9769994777875
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.83 E-value=0.01 Score=30.45 Aligned_cols=21 Identities=24% Similarity=0.661 Sum_probs=11.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+|+|.-+||||||+++|.|.
T Consensus 27 ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTS
T ss_pred EEEEECCCCCHHHHHHHHHCC
T ss_conf 999818989799999999689
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.83 E-value=0.0084 Score=30.94 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.82 E-value=0.0067 Score=31.54 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=22.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 780999965799964478860508967
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
....+.|.||+|+|||||.+.|++...
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 997999889799889999999999865
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.82 E-value=0.0081 Score=31.02 Aligned_cols=21 Identities=62% Similarity=0.746 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
++++|++|+|||||++.+.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998999999999648
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.81 E-value=0.0078 Score=31.12 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999689999999549
Q 000506 198 MTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
-++|+|.|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789999899999999778
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.76 E-value=0.008 Score=31.04 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8099996579996447886050896
Q 000506 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 894 Ge~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
-.++.|+||+||||||+-+.|+...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=94.76 E-value=0.017 Score=29.06 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=14.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7809999657999644788605089
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
|.-.+.+.||+|+|||.|-+.|++.
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8863888779985088999999998
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.76 E-value=0.01 Score=30.40 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999968999999954
Q 000506 198 MTLLLGPPGAGKTTLLMALAG 218 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG 218 (1458)
+.+|.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.73 E-value=0.0091 Score=30.70 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=22.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 47809999657999644788605089
Q 000506 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 892 ~pGe~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.+|-.+.|+||+||||||+-+.|+.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.73 E-value=0.014 Score=29.66 Aligned_cols=28 Identities=32% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8839999859999689999999549899
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKLDD 222 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l~~ 222 (1458)
.|.+.++-|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.71 E-value=0.013 Score=29.76 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=20.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 809999657999644788605089
Q 000506 894 GVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 894 Ge~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
..++.++||+|+||||.+-=||.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.71 E-value=0.022 Score=28.30 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=19.9
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 567838839999859999689999999549
Q 000506 190 SGLVKPSRMTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 190 s~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
+...-.|.-+++.|+||+||||+...|..+
T Consensus 8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 8 VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999999808999989999999985
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.69 E-value=0.0093 Score=30.66 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=22.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 780999965799964478860508967
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
+.-.++++|.+|+|||||++.|.+...
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 857999999999898999999966888
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.69 E-value=0.0086 Score=30.88 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=22.0
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 847809999657999644788605089
Q 000506 891 FRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 891 i~pGe~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
+|+. .+||+|..+||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.69 E-value=0.0019 Score=34.83 Aligned_cols=21 Identities=38% Similarity=0.688 Sum_probs=11.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+++|.+++|||||+++|.|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.69 E-value=0.0079 Score=31.11 Aligned_cols=29 Identities=34% Similarity=0.463 Sum_probs=25.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 46784780999965799964478860508
Q 000506 888 SGVFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1458)
Q Consensus 888 s~~i~pGe~~ai~G~sGaGKTTLl~~L~g 916 (1458)
.|-+.+|+++.|.|++|+|||||..-++-
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79986996999983899988999999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.65 E-value=0.0089 Score=30.79 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099996579996447886050896
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++.++|.+|+|||||.+.|+...
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999999999999999999
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.62 E-value=0.0081 Score=31.01 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579996447886050896
Q 000506 897 TALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
+.|+|++||||||+-+.|+.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.61 E-value=0.014 Score=29.60 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
.+++|...+|||||+++|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.61 E-value=0.0088 Score=30.81 Aligned_cols=21 Identities=52% Similarity=0.710 Sum_probs=9.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
+++.||||+||||+.++++-.
T Consensus 36 lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 998899999889999999976
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.61 E-value=0.0098 Score=30.52 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 780999965799964478860508
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAG 916 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g 916 (1458)
.-+++.++|++||||||+.+-++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.59 E-value=0.0099 Score=30.49 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8099996579996447886050896
Q 000506 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 894 Ge~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.-+++|-|..||||||+++.|+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6199988999988899999999870
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.58 E-value=0.0078 Score=31.11 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.+.|+||+||||||+-+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889999989999999998
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.56 E-value=0.0086 Score=30.88 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.+.|.|++||||||+-+.|+-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.53 E-value=0.011 Score=30.23 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.53 E-value=0.011 Score=30.17 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
.+++|++|+|||||++.+.+..
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999969899999997098
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.52 E-value=0.01 Score=30.47 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.+||.||+||||||+-+.|+...
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.51 E-value=0.021 Score=28.52 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999689999999549
Q 000506 198 MTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
-+.|+|-|.+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 4888899999889999999779
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.016 Score=29.20 Aligned_cols=27 Identities=37% Similarity=0.613 Sum_probs=22.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999968999999954989
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
|....+++||+|+|||.|.+.||-.+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 765899977875006999999986336
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.44 E-value=0.009 Score=30.73 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=21.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 78099996579996447886050896
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
|+.-+.+.||+|+|||.|.++||...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 98669998999988889999986213
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.38 E-value=0.014 Score=29.51 Aligned_cols=21 Identities=43% Similarity=0.635 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+++|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.37 E-value=0.01 Score=30.45 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579996447886050896
Q 000506 897 TALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
+.|+|++||||||+-+.||-+.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999994
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.34 E-value=0.016 Score=29.22 Aligned_cols=43 Identities=23% Similarity=0.488 Sum_probs=29.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCCCCEEEEECCCCCCC
Q ss_conf 99998599996899999995498999996428999796257766664089963789889
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLDDDLKLTGKIKYCGHEFKEFVPQRTCAYISQNDLHF 256 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~ 256 (1458)
+++|-|++|||||||...|.-.+... .| ....++.++.+|.+.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---~~-------------~~~~v~~iS~DdfY~ 71 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---YG-------------GEKSIGYASIDDFYL 71 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---HG-------------GGSCEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---HC-------------CCCCEEEECCCCCCC
T ss_conf 99837998788999999999999987---27-------------786067635677778
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.32 E-value=0.0027 Score=33.94 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+++|||||++.|.|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.013 Score=29.76 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.29 E-value=0.014 Score=29.64 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=28.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEECCE
Q ss_conf 47809999657999644788605089679801559999895
Q 000506 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYTEGDISISGY 932 (1458)
Q Consensus 892 ~pGe~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~G~ 932 (1458)
+.|.++-+.|.||||||||-+.|+-+.......-.+.++|-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD 62 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 62 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 99869999899999989999999988777427508997536
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.29 E-value=0.016 Score=29.15 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=12.0
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 78388399998599996899999995
Q 000506 192 LVKPSRMTLLLGPPGAGKTTLLMALA 217 (1458)
Q Consensus 192 ~i~~Ge~~~ilGp~GsGKSTLL~~La 217 (1458)
=++.|+++.+.||+|+|||||+..++
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 86663369996488748899999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.21 E-value=0.014 Score=29.55 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+++|++|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999829
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.20 E-value=0.016 Score=29.14 Aligned_cols=25 Identities=32% Similarity=0.386 Sum_probs=16.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8399998599996899999995498
Q 000506 196 SRMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 196 Ge~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
-...+++||+|+||||.+--||-++
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9899998999998899999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.17 E-value=0.0099 Score=30.48 Aligned_cols=24 Identities=46% Similarity=0.642 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099996579996447886050896
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
-.++++|++|+|||||++.+.+..
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999989999999996487
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.16 E-value=0.03 Score=27.49 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=20.5
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 567838839999859999689999999549
Q 000506 190 SGLVKPSRMTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 190 s~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
+...-.|.=+++.|+||+||||+...|.-+
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999999808999999999999984
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.014 Score=29.65 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996899999995498
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
-.+++|++|+|||||++.+.+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999979989999999998098
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.13 E-value=0.032 Score=27.33 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.13 E-value=0.013 Score=29.67 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.+.|+||+||||||.-+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.12 E-value=0.0094 Score=30.62 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 47809999657999644788605089
Q 000506 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 892 ~pGe~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
+.+.++.|+||+||||||+-+.|+..
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67828999899999879999999998
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.014 Score=29.55 Aligned_cols=27 Identities=41% Similarity=0.462 Sum_probs=23.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 478099996579996447886050896
Q 000506 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 892 ~pGe~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
+.|.+++|-|+-||||||+.+.|....
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 980599998998889999999999999
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.016 Score=29.14 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=16.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998599996899999995498
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.10 E-value=0.017 Score=29.07 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999689999999549
Q 000506 198 MTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.++|+|.-+||||||+++|.|.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999768989799999999689
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.07 E-value=0.022 Score=28.31 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=16.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 6784780999965799964478860508
Q 000506 889 GVFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1458)
Q Consensus 889 ~~i~pGe~~ai~G~sGaGKTTLl~~L~g 916 (1458)
|-+..|.++-+-|++|+|||||.-.++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9866754789805876522799999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.06 E-value=0.013 Score=29.79 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579996447886050896
Q 000506 897 TALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
+.|+|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.04 E-value=0.016 Score=29.21 Aligned_cols=21 Identities=33% Similarity=0.738 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+++|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.02 E-value=0.018 Score=28.82 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=12.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998599996899999995498
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
.+.+++||+|+||||.+--||-++
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp EEEEEECSCCC----HHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999999899999999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.98 E-value=0.014 Score=29.56 Aligned_cols=28 Identities=36% Similarity=0.536 Sum_probs=24.0
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 4678478099996579996447886050
Q 000506 888 SGVFRPGVLTALMGVSGAGKTTLMDVLA 915 (1458)
Q Consensus 888 s~~i~pGe~~ai~G~sGaGKTTLl~~L~ 915 (1458)
.|-+.+|+++.|.|++|+|||||.--++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.021 Score=28.44 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+++|++|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.95 E-value=0.029 Score=27.63 Aligned_cols=34 Identities=29% Similarity=0.217 Sum_probs=26.6
Q ss_pred ECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 11131467847809999657999644788605089
Q 000506 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 883 iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.+|.....+ .|.-+.|.|+||+|||||...|..+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 178999999-9999999818999989999999985
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.027 Score=27.83 Aligned_cols=23 Identities=48% Similarity=0.793 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999968999999954989
Q 000506 199 TLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
.+++|.+|+|||||++.+.+.-.
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.019 Score=28.77 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=23.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 80999965799964478860508967
Q 000506 894 GVLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 894 Ge~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
+.+++|-|+.||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.90 E-value=0.018 Score=28.90 Aligned_cols=20 Identities=35% Similarity=0.689 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999968999999954
Q 000506 199 TLLLGPPGAGKTTLLMALAG 218 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG 218 (1458)
.+|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999971
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.88 E-value=0.016 Score=29.27 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
+..|.|++||||||+.+.|+.+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.86 E-value=0.018 Score=28.92 Aligned_cols=21 Identities=38% Similarity=0.746 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
++|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.85 E-value=0.017 Score=29.12 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.+.|+|++||||||+-+.|+...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.85 E-value=0.022 Score=28.34 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998599996899999995
Q 000506 198 MTLLLGPPGAGKTTLLMALA 217 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~La 217 (1458)
+.+|.|++||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=0.017 Score=29.07 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
++++|.+|+|||||++.+.+..
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~~ 29 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQGL 29 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999919899999997299
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.018 Score=28.84 Aligned_cols=22 Identities=32% Similarity=0.714 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
.+++|.+|+|||||++.+.+..
T Consensus 10 i~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989908899999997199
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.84 E-value=0.016 Score=29.26 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965799964478860508
Q 000506 896 LTALMGVSGAGKTTLMDVLAG 916 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g 916 (1458)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.82 E-value=0.017 Score=29.00 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 78099996579996447886050896
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.+..+.|.|++|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.82 E-value=0.02 Score=28.63 Aligned_cols=29 Identities=38% Similarity=0.661 Sum_probs=23.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 38839999859999689999999549899
Q 000506 194 KPSRMTLLLGPPGAGKTTLLMALAGKLDD 222 (1458)
Q Consensus 194 ~~Ge~~~ilGp~GsGKSTLL~~LaG~l~~ 222 (1458)
.++-++++.||.||||||+|.++...++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 41054898767877744779998666257
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.82 E-value=0.023 Score=28.23 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999968999999954
Q 000506 198 MTLLLGPPGAGKTTLLMALAG 218 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG 218 (1458)
+.+|.|++||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.81 E-value=0.018 Score=28.84 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
.+++|.+|+|||||++.+.+..
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999967899999998688
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.81 E-value=0.018 Score=28.95 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999689999999549
Q 000506 198 MTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
-++|+|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.81 E-value=0.015 Score=29.37 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999997197
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.81 E-value=0.027 Score=27.84 Aligned_cols=34 Identities=26% Similarity=0.179 Sum_probs=25.8
Q ss_pred ECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 11131467847809999657999644788605089
Q 000506 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 883 iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.||. +...-.|.-+.++|+||+|||||...|..+
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 2899-999999999999808999989999999985
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.81 E-value=0.022 Score=28.39 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
++++|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.79 E-value=0.0091 Score=30.71 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.74 E-value=0.02 Score=28.65 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=21.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7809999657999644788605089
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.+..++++||+|+||||.+-=||.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9779999899999889999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.71 E-value=0.015 Score=29.44 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.++++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.70 E-value=0.015 Score=29.30 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=25.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 46784780999965799964478860508
Q 000506 888 SGVFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1458)
Q Consensus 888 s~~i~pGe~~ai~G~sGaGKTTLl~~L~g 916 (1458)
.|-+.+|+++.|.|++|+|||++..-++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69976897999988998878899999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.69 E-value=0.03 Score=27.53 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999968999999954989
Q 000506 199 TLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
.+++|.+|+|||||++.+.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999899299999999972867
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.66 E-value=0.025 Score=28.01 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=14.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999968999999954989
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
+.+|-|..||||||+++.|+.++.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.65 E-value=0.021 Score=28.49 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099996579996447886050896
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
..+.|.||+|+||||+.++|+...
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 449998799998889999999998
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.65 E-value=0.022 Score=28.33 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996899999995498
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
-.+++|.+|+|||||++.+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.63 E-value=0.033 Score=27.30 Aligned_cols=28 Identities=36% Similarity=0.428 Sum_probs=17.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3883999985999968999999954989
Q 000506 194 KPSRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 194 ~~Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
+||.++++-|+=|||||||.+.++..+.
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9982999966877658899999876422
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.62 E-value=0.013 Score=29.73 Aligned_cols=20 Identities=55% Similarity=0.715 Sum_probs=12.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999968999999954
Q 000506 199 TLLLGPPGAGKTTLLMALAG 218 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG 218 (1458)
.+++|++|+|||||++.+.+
T Consensus 20 I~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999988999988733
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.60 E-value=0.019 Score=28.78 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.+||+|.+.+|||||+++|+|-.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.60 E-value=0.025 Score=28.05 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999968999999954989
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
.+.+++||+|+||||.+--||-++.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999989999998999999999999
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.57 E-value=0.02 Score=28.63 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.+.|+|++||||||+-+.|+.+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.55 E-value=0.023 Score=28.23 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
++|+|.+|+|||||++.+.+..
T Consensus 7 ivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999949899999997299
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.53 E-value=0.018 Score=28.90 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+|+|||||++.+.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.52 E-value=0.021 Score=28.51 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999968999999954
Q 000506 198 MTLLLGPPGAGKTTLLMALAG 218 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG 218 (1458)
-.+|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.026 Score=27.91 Aligned_cols=36 Identities=39% Similarity=0.693 Sum_probs=29.0
Q ss_pred CEECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 301113146784780999965799964478860508967
Q 000506 881 LQLLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 881 ~~iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
..+|+.++. |=.+++|+|+.++|||||||.|+|...
T Consensus 22 l~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 22 LKILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp HHHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred HHHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999970799---879999889999979999999809987
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.50 E-value=0.021 Score=28.49 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+++|.+|+|||||++.+.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990999999999709
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.47 E-value=0.02 Score=28.59 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=21.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7809999657999644788605089
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
+...++++||+|+||||.+-=||.+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999889999999999
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.35 E-value=0.016 Score=29.21 Aligned_cols=21 Identities=48% Similarity=0.569 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
++++|++|+|||||++.+.+.
T Consensus 15 IvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998789999998448
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.34 E-value=0.02 Score=28.56 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=36.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99789993999999999999999999998757998999935850999986361889925939999479974237899999
Q 000506 1025 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYF 1104 (1458)
Q Consensus 1025 ~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~~~~~~~~~~yF 1104 (1458)
++.++++||-- .+.......+...+..- .....+++++++++. +...+. ++ -.++.+.|... ..+..+.
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~-~~~~~~i~~~n~~~~-i~~~l~-----sR-~~~i~~~~~~~--~~~~~~l 177 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMF-SSNVRFILSCNYSSK-IIEPIQ-----SR-CAIFRFRPLRD--EDIAKRL 177 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGG-SCHHHH-----HT-EEEEECCCCCH--HHHHHHH
T ss_pred CCEEEEEHHHH-HCCHHHHHHHHHHCCCC-CCCEEEEECCCCHHH-CHHHHH-----CC-CCCCCCCCCCH--HHHHHHH
T ss_conf 72288614344-31214789876411247-764478861487665-657684-----73-12101233430--4677899
Q ss_pred HHC
Q ss_conf 839
Q 000506 1105 EAV 1107 (1458)
Q Consensus 1105 ~~~ 1107 (1458)
..+
T Consensus 178 ~~~ 180 (231)
T d1iqpa2 178 RYI 180 (231)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 888
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.23 E-value=0.044 Score=26.53 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=10.0
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999657999644788605
Q 000506 897 TALMGVSGAGKTTLMDVL 914 (1458)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L 914 (1458)
+||+|..|||||||...|
T Consensus 9 i~i~gh~~~GKTtL~e~l 26 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERI 26 (276)
T ss_dssp EEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHH
T ss_conf 999958989989999999
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.018 Score=28.86 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+|+|||||++.+.+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999979989999999998098
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.19 E-value=0.026 Score=27.96 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.-.||||||+++|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.18 E-value=0.023 Score=28.24 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.+.|+|++||||||.-+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.18 E-value=0.025 Score=27.97 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999657999644788605089
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
=++||-|++|||||||-+.|.-.
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89983799878899999999999
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.18 E-value=0.032 Score=27.33 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=19.8
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 784780999965799964478860508
Q 000506 890 VFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1458)
Q Consensus 890 ~i~pGe~~ai~G~sGaGKTTLl~~L~g 916 (1458)
-+-.|+..+|.|++|+|||||+..++.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 645787556867999887899999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.17 E-value=0.026 Score=27.93 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|...||||||+++|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.17 E-value=0.016 Score=29.22 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+++|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994999999999709
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.16 E-value=0.021 Score=28.46 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=20.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7809999657999644788605089
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
+--.++++|.+|+|||||++.+.+.
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 6689999999999889999887338
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.15 E-value=0.029 Score=27.66 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
++++|.+|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992989999999739
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.15 E-value=0.025 Score=28.00 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.024 Score=28.09 Aligned_cols=23 Identities=52% Similarity=0.627 Sum_probs=18.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999859999689999999549
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
-++.|-|.-||||||||+-|...
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred CEEEEEECCCCCHHHHHHHHHHC
T ss_conf 88998648889999999999856
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.14 E-value=0.037 Score=26.94 Aligned_cols=34 Identities=32% Similarity=0.192 Sum_probs=26.5
Q ss_pred ECCCCEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 11131467847809999657999644788605089
Q 000506 883 LLRDVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 883 iL~~vs~~i~pGe~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
-+|. +.....|.-+.|.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.14 E-value=0.053 Score=26.03 Aligned_cols=19 Identities=53% Similarity=0.691 Sum_probs=11.7
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999859999689999999
Q 000506 198 MTLLLGPPGAGKTTLLMAL 216 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~L 216 (1458)
-.+|+|+.|+|||||..+|
T Consensus 4 Nv~iiGh~~~GKTtL~e~l 22 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEAL 22 (267)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999948898099999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.10 E-value=0.026 Score=27.90 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.++++|.+|+|||||++.+.+.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999829
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.027 Score=27.77 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+|+|||||++-+.+..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~ 26 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGT 26 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989979899999997099
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=93.08 E-value=0.024 Score=28.08 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=18.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 83999985999968999999954
Q 000506 196 SRMTLLLGPPGAGKTTLLMALAG 218 (1458)
Q Consensus 196 Ge~~~ilGp~GsGKSTLL~~LaG 218 (1458)
-+.++|+|++|||||++++.+.-
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHH
T ss_conf 26589990799968999999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.06 E-value=0.023 Score=28.19 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+|+|||||++.+.+..
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~~ 26 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNKK 26 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999919899999997198
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.03 Score=27.54 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999965799964478860508967
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
.++++|.+|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.027 Score=27.77 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.02 E-value=0.027 Score=27.81 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.+.|+|++||||||+-+.|+...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=93.01 E-value=0.021 Score=28.49 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=13.9
Q ss_pred EEEEECCCCCCHHHHHH
Q ss_conf 99998599996899999
Q 000506 198 MTLLLGPPGAGKTTLLM 214 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~ 214 (1458)
-++|.|+|||||||.|-
T Consensus 16 ~~lI~g~aGTGKTt~l~ 32 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVIT 32 (306)
T ss_dssp EEEECCCTTSCHHHHHH
T ss_pred CEEEEEECCCCHHHHHH
T ss_conf 98999628843899999
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.022 Score=28.33 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.++++|.+|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.00 E-value=0.032 Score=27.33 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=28.6
Q ss_pred HCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 1699597985799899-9999999999999998846966999980793389
Q 000506 357 VGPAKVLLMDEISTGL-DSSTTFQICKYMKQMVHVLEITTIVSLLQPAPEA 406 (1458)
Q Consensus 357 ~~~~~illlDEptsGL-Ds~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~e~ 406 (1458)
+...+++++|+.-.=. +......+...+..... .++.++++...++.+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCCCHHC
T ss_conf 7621301011265505865778899999998763-1663899548751001
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.96 E-value=0.025 Score=27.99 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
-+.+.||+|+||||+.++|+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 48987999973889999998503
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.94 E-value=0.028 Score=27.71 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=20.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7809999657999644788605089
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
....++++||+|+||||.+-=||.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999989999999999
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.94 E-value=0.031 Score=27.42 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=9.5
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996579996447886050
Q 000506 896 LTALMGVSGAGKTTLMDVLA 915 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~ 915 (1458)
-++++|..++|||||++.|.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999478984999999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=92.93 E-value=0.028 Score=27.69 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.+.|+|++||||||+-+.|+-+.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.92 E-value=0.058 Score=25.79 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=10.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+++|+..+|||||++.|.|.
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~ 31 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGI 31 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999972488699999999704
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=0.029 Score=27.61 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996899999995498
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
-++|+|.+|+|||||++.+.+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=0.033 Score=27.27 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996899999995498
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
-++|+|.+|+|||||++.+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=0.024 Score=28.18 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999657999644788605089
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
-.++|+|.+|+|||||++.+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.88 E-value=0.033 Score=27.29 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
++|+|.+|+|||||++.+.+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999993989999999829
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.88 E-value=0.072 Score=25.19 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=13.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999689999999549
Q 000506 198 MTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
-.+++|.+|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.86 E-value=0.033 Score=27.24 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=24.3
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 847809999657999644788605089
Q 000506 891 FRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 891 i~pGe~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.+||.+++|-|+=||||||+.+.++.-
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 799829999668776588999998764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.79 E-value=0.035 Score=27.15 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
++++|++|+|||+|++-+.+..
T Consensus 5 i~lvG~~~vGKTsli~r~~~~~ 26 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTKR 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989978999999997398
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.79 E-value=0.035 Score=27.13 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 47809999657999644788605089
Q 000506 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 892 ~pGe~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
+|...+.++||+|+|||.|.+.||..
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87658999778750069999999863
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=92.77 E-value=0.025 Score=28.06 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=18.0
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHH
Q ss_conf 2631305678388399998599996899999
Q 000506 184 QILKDVSGLVKPSRMTLLLGPPGAGKTTLLM 214 (1458)
Q Consensus 184 ~iL~~vs~~i~~Ge~~~ilGp~GsGKSTLL~ 214 (1458)
.++++. .| -++|.|++||||||.|-
T Consensus 18 ~~v~~~-----~g-~~lV~g~aGSGKTt~l~ 42 (318)
T d1pjra1 18 EAVRTT-----EG-PLLIMAGAGSGKTRVLT 42 (318)
T ss_dssp HHHHCC-----SS-CEEEEECTTSCHHHHHH
T ss_pred HHHHCC-----CC-CEEEEECCCCCHHHHHH
T ss_conf 998299-----99-98999529866899999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.76 E-value=0.036 Score=27.01 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
++.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=92.75 E-value=0.042 Score=26.64 Aligned_cols=21 Identities=38% Similarity=0.716 Sum_probs=16.8
Q ss_pred CCEEEEEECCCCCCHHHHHHH
Q ss_conf 883999985999968999999
Q 000506 195 PSRMTLLLGPPGAGKTTLLMA 215 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~ 215 (1458)
.+.++.|.||||+||||++..
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHH
T ss_pred CCCEEEEECCCCCCCEEHHHH
T ss_conf 088599976898875216999
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.75 E-value=0.03 Score=27.56 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
-+|++|.-++|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.74 E-value=0.023 Score=28.18 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+|+|||||++.+.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.74 E-value=0.033 Score=27.30 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999689999999549
Q 000506 198 MTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
-++|+|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.71 E-value=0.036 Score=27.05 Aligned_cols=21 Identities=29% Similarity=0.600 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
++|+|.+|+|||||++-+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.69 E-value=0.033 Score=27.25 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965799964478860508
Q 000506 896 LTALMGVSGAGKTTLMDVLAG 916 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g 916 (1458)
++||.|..||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.68 E-value=0.043 Score=26.58 Aligned_cols=30 Identities=30% Similarity=0.487 Sum_probs=27.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 678388399998599996899999995498
Q 000506 191 GLVKPSRMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 191 ~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
|-+.+|++|.+.||||||||||+..++...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 996673589980577747899999999998
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.66 E-value=0.034 Score=27.20 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 780999965799964478860508967
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
.|.++++-|+-||||||+.+.|+.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.65 E-value=0.029 Score=27.63 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+|+|||||++-+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.57 E-value=0.028 Score=27.73 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+|+|||||++.+.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999939999999996299
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.54 E-value=0.032 Score=27.35 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=11.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999968999999954
Q 000506 199 TLLLGPPGAGKTTLLMALAG 218 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG 218 (1458)
.+++|++|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999088999999984
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.53 E-value=0.026 Score=27.91 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.++++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.47 E-value=0.039 Score=26.80 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996899999995498
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
-.+++|.+|+|||||++-+.+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~ 27 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999919899999997299
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.47 E-value=0.023 Score=28.28 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+|+|||||++.+.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999908899999998498
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.46 E-value=0.036 Score=27.06 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.+.|+|+.||||||+-+.|+.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.44 E-value=0.04 Score=26.76 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999689999999549
Q 000506 198 MTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
-.+|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.44 E-value=0.027 Score=27.82 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.++++|.+|+|||||++-+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.40 E-value=0.038 Score=26.91 Aligned_cols=26 Identities=31% Similarity=0.412 Sum_probs=22.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 78099996579996447886050896
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.|..+++-|+-||||||+.+.|+.+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98789998998887999999999999
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.041 Score=26.72 Aligned_cols=20 Identities=40% Similarity=0.735 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999968999999954
Q 000506 199 TLLLGPPGAGKTTLLMALAG 218 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG 218 (1458)
++++|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.39 E-value=0.034 Score=27.17 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=21.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8099996579996447886050896
Q 000506 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 894 Ge~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
-.+++++||+|+||||.+-=||.+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9799998999999899999999999
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.041 Score=26.67 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996899999995498
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
-.+++|.+|+|||||++-+.+.-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~ 30 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999949899999998598
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.36 E-value=0.037 Score=26.94 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=21.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 78099996579996447886050896
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
|-.-+.|.||+|+|||++.++||...
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 98079988969998899999986201
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.36 E-value=0.028 Score=27.69 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|..|+|||||++.+.+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~~~ 30 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDDT 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999909899999996198
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.34 E-value=0.026 Score=27.90 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+|+|||||++.+.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~ 30 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSEDA 30 (173)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999949999999997098
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.33 E-value=0.044 Score=26.52 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998599996899999995
Q 000506 198 MTLLLGPPGAGKTTLLMALA 217 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~La 217 (1458)
-++++|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79999899998899999895
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.29 E-value=0.035 Score=27.15 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++|+|.+|+|||||++.+.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999949899999997299
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.26 E-value=0.028 Score=27.67 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
=+.++||+|+|||-|.+.||+..
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 47998999988999999999873
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.25 E-value=0.029 Score=27.66 Aligned_cols=22 Identities=45% Similarity=0.572 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579996447886050896
Q 000506 897 TALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
+.+.||+|.||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988979987888999999984
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.24 E-value=0.032 Score=27.33 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|..|+|||||++.+.+..
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989908899999997199
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.21 E-value=0.036 Score=27.05 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+|+|||||++-+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.18 E-value=0.046 Score=26.38 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=16.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999689999999549
Q 000506 198 MTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
-.+++|.+|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.16 E-value=0.022 Score=28.30 Aligned_cols=24 Identities=21% Similarity=0.500 Sum_probs=21.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 809999657999644788605089
Q 000506 894 GVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 894 Ge~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
+-.+||+|.+.+|||||+++|++-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 737999789999899999999778
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.11 E-value=0.038 Score=26.91 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579996447886050896
Q 000506 897 TALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
+.+.||+|+||||+.++++...
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.06 E-value=0.041 Score=26.68 Aligned_cols=29 Identities=34% Similarity=0.564 Sum_probs=25.0
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78388399998599996899999995498
Q 000506 192 LVKPSRMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 192 ~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
.+-.|+-.+|+|++|+|||||+..++-..
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 64578755686799988789999999977
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.03 E-value=0.038 Score=26.87 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+|+|||||++-+.+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~ 26 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGR 26 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999929899999997399
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.043 Score=26.55 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.++++|.+|+|||||++-+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.02 E-value=0.037 Score=26.96 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=20.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8099996579996447886050896
Q 000506 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 894 Ge~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.-.+.++|++|+|||||++.+.+..
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 4799999999987899999984488
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.96 E-value=0.065 Score=25.45 Aligned_cols=28 Identities=36% Similarity=0.512 Sum_probs=24.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 4780999965799964478860508967
Q 000506 892 RPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 892 ~pGe~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
+|.--+|++|.-.+|||||++.|.|...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9970899997248869999999970412
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.038 Score=26.92 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+|+|||||++.+.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989909899999998499
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.87 E-value=0.04 Score=26.76 Aligned_cols=21 Identities=48% Similarity=0.634 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965799964478860508
Q 000506 896 LTALMGVSGAGKTTLMDVLAG 916 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g 916 (1458)
-+||+|..|+|||||.+.|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999994889809999999999
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.82 E-value=0.055 Score=25.93 Aligned_cols=18 Identities=44% Similarity=0.704 Sum_probs=9.9
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999859999689999999
Q 000506 199 TLLLGPPGAGKTTLLMAL 216 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~L 216 (1458)
++++|.+|+|||||++-+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999989999988
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.82 E-value=0.047 Score=26.32 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.++++|.+|+|||||++-+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.037 Score=27.00 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
++.++|.+|+|||||++.+.+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.73 E-value=0.068 Score=25.35 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999859999689999999549899
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKLDD 222 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l~~ 222 (1458)
...++=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.72 E-value=0.045 Score=26.47 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++|+|.+|+|||||++.+.+..
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCENK 27 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999939899999998299
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.72 E-value=0.053 Score=26.00 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 80999965799964478860508967
Q 000506 894 GVLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 894 Ge~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
...+.|.||+|.||||+++.|+....
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 88168889899989999999999975
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.70 E-value=0.052 Score=26.06 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.69 E-value=0.051 Score=26.10 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965799964478860508
Q 000506 896 LTALMGVSGAGKTTLMDVLAG 916 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g 916 (1458)
++||.|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.68 E-value=0.041 Score=26.68 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHH---HCCCCC
Q ss_conf 39999859999689999999---549899
Q 000506 197 RMTLLLGPPGAGKTTLLMAL---AGKLDD 222 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~L---aG~l~~ 222 (1458)
+-.+|+|+.|||||||..+| +|..+.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 29999958989989999999996485340
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.64 E-value=0.069 Score=25.31 Aligned_cols=28 Identities=46% Similarity=0.662 Sum_probs=23.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3883999985999968999999954989
Q 000506 194 KPSRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 194 ~~Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
+|.-..+++||+|+|||.+.+.|+-.+.
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 8766999978886248999999999835
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.62 E-value=0.052 Score=26.08 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
+++|-|.-||||||+++.|..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.58 E-value=0.053 Score=26.00 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996899999995498
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
-++++|.+|+|||+|++.+.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.49 E-value=0.041 Score=26.73 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.++++|..|+|||||++.+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.49 E-value=0.067 Score=25.39 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999968999999954989
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
-.+|+||||.|||++...|+-++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.39 E-value=0.046 Score=26.39 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.++++|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=91.38 E-value=0.091 Score=24.58 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=22.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999968999999954989
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
.+-..+|+|-|-+|||||+|+|.|+-.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.37 E-value=0.046 Score=26.41 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099996579996447886050896
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
-.+||+|-+.+|||||+++|++..
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 348888999998899999997799
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.34 E-value=0.058 Score=25.78 Aligned_cols=77 Identities=21% Similarity=0.221 Sum_probs=40.1
Q ss_pred HHCCCEEEEECCCCCCCHHH-------HHHHHHHHHHH---HH-CCCEEEEEECCCCHHHHHHHCEEEEEEC--CCEEEE
Q ss_conf 51997899939999999999-------99999999998---75-7998999935850999986361889925--939999
Q 000506 1023 VANPSIIFMDEPTSGLDARA-------AAIVMRTVRNT---VD-TGRTVVCTIHQPSIDIFEAFDELLLMKR--GGQVIY 1089 (1458)
Q Consensus 1023 v~~p~il~LDEPTsGLD~~s-------a~~i~~~l~~~---~~-~g~tvi~t~Hqps~~i~~~fD~illl~~--gG~~~y 1089 (1458)
...|.|||+||--+=...++ ...+...+... .. .+.-||+|+++|. .+ |.-++ .. =.+.++
T Consensus 95 ~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~-~l----d~al~-r~gRfd~~i~ 168 (258)
T d1e32a2 95 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN-SI----DPALR-RFGRFDREVD 168 (258)
T ss_dssp HTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGG-GS----CGGGT-STTSSCEEEE
T ss_pred HCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCC-CC----CHHHH-HCCCCCCEEE
T ss_conf 649949985211132257887777068999877500110123468811797579931-02----52454-2463023237
Q ss_pred ECCCCCCHHHHHHHHHHC
Q ss_conf 479974237899999839
Q 000506 1090 AGPLGRQSQKLVEYFEAV 1107 (1458)
Q Consensus 1090 ~G~~~~~~~~~~~yF~~~ 1107 (1458)
.+++.. ..-...++..
T Consensus 169 ~~~P~~--~~R~~il~~~ 184 (258)
T d1e32a2 169 IGIPDA--TGRLEILQIH 184 (258)
T ss_dssp CCCCCH--HHHHHHHHHT
T ss_pred CCCCCH--HHHHHHHHHH
T ss_conf 899998--8999873220
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.30 E-value=0.052 Score=26.08 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+|+|||||++-+.+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~ 27 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999919899999997299
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.20 E-value=0.062 Score=25.58 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0999965799964478860508
Q 000506 895 VLTALMGVSGAGKTTLMDVLAG 916 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g 916 (1458)
-.+.|+|.+|+|||||++-+..
T Consensus 7 ~KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 7799998999988999998950
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.19 E-value=0.09 Score=24.60 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=11.6
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996579996447886050
Q 000506 896 LTALMGVSGAGKTTLMDVLA 915 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~ 915 (1458)
++||.|.-||||||..+.|.
T Consensus 3 iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99997999988999999999
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.17 E-value=0.089 Score=24.62 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=16.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999968999999954989
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
-.++.||+|+||||+.+.++..+.
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 798889998759999999998210
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.08 E-value=0.069 Score=25.29 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996899999995498
Q 000506 199 TLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
.+++|.+|+|||+|++-+.+..
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999989989999999997098
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.03 E-value=0.066 Score=25.41 Aligned_cols=21 Identities=29% Similarity=0.533 Sum_probs=18.4
Q ss_pred EEEEEECCCCCCHHHHHHHHC
Q ss_conf 099996579996447886050
Q 000506 895 VLTALMGVSGAGKTTLMDVLA 915 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~ 915 (1458)
-.+.++|.+|+|||||++-+.
T Consensus 3 iKivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899999899999899999884
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.02 E-value=0.059 Score=25.73 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++|+|.+|+|||||++.+....
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~~ 33 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYANDA 33 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999989999999996499
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.02 E-value=0.058 Score=25.77 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=40.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99789993999999999999999999998757998999935850999986361889925939999479974237899999
Q 000506 1025 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYF 1104 (1458)
Q Consensus 1025 ~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~~~~~~~~~~yF 1104 (1458)
+..++++||.-. +...+...+...+.... ....++++.++.+ .+... +.++ -..+.+.|+.. ..+..+.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~-~i~~~-----l~sr-~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYS-NSTRFAFACNQSN-KIIEP-----LQSQ-CAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTT-TTEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCCC-CCEEEEECCCCHH-HHHHH-----HHHH-HHHHHHCCCCH--HHHHHHH
T ss_conf 359999824432-32157787752011233-3336653147430-21067-----8877-77765313322--4567888
Q ss_pred HHC
Q ss_conf 839
Q 000506 1105 EAV 1107 (1458)
Q Consensus 1105 ~~~ 1107 (1458)
..+
T Consensus 170 ~~i 172 (224)
T d1sxjb2 170 LQI 172 (224)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 777
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.01 E-value=0.065 Score=25.48 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.+.++|.+|+|||||++-+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=91.00 E-value=0.081 Score=24.89 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=11.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999968999999954
Q 000506 199 TLLLGPPGAGKTTLLMALAG 218 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG 218 (1458)
.+++|+..+|||||++.|.+
T Consensus 6 i~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99995889809999999999
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.98 E-value=0.093 Score=24.51 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999968999999954989
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
..++-||||+||||+.++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 598888998758999999999846
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.83 E-value=0.056 Score=25.87 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.++++|.+|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992999999999719
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.81 E-value=0.069 Score=25.29 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+|+|||||++-+.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~ 30 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999949899999998598
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.79 E-value=0.056 Score=25.86 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.+.++|.+|+|||||++-+.+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~ 26 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKR 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999997398
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.67 E-value=0.058 Score=25.76 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.+.++|.+|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.58 E-value=0.083 Score=24.81 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999689999999549
Q 000506 198 MTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
-++++|.+|+|||+|++.+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.42 E-value=0.08 Score=24.92 Aligned_cols=22 Identities=36% Similarity=0.244 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999689999999549
Q 000506 198 MTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
-.+++|++++|||||++.|.+.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=90.40 E-value=0.13 Score=23.62 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999689999999549899
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLDD 222 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~~ 222 (1458)
...|=|+-|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999888667899999999998656
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.12 E-value=0.076 Score=25.06 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=39.9
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 97899939999999999999999999987579989999358509999863618899259399994799742378999998
Q 000506 1026 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEYFE 1105 (1458)
Q Consensus 1026 p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~~~~~~~~~~yF~ 1105 (1458)
..++++||.- .+.......+.+.+.+... ...++++.+++. .+... +.++ ...+.+.|+.. .++..+..
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~-~i~~~-----i~sr-~~~i~~~~~~~--~~i~~~l~ 168 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTK-NTRFCVLANYAH-KLTPA-----LLSQ-CTRFRFQPLPQ--EAIERRIA 168 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHHHH
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHCCC-CEEECCCCCCHH-HHHHH-----HHHH-HHHHCCCCCCC--CCCCCCCC
T ss_conf 1899996632-0002378999988631120-023201267087-75999-----9988-75401235652--00011021
Q ss_pred HC
Q ss_conf 39
Q 000506 1106 AV 1107 (1458)
Q Consensus 1106 ~~ 1107 (1458)
.+
T Consensus 169 ~I 170 (227)
T d1sxjc2 169 NV 170 (227)
T ss_dssp HH
T ss_pred CC
T ss_conf 22
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.07 E-value=0.08 Score=24.90 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=43.1
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCCCCHHHHHHH
Q ss_conf 19978999399999999999999999999875799899993585099998636188992593999947997423789999
Q 000506 1024 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRQSQKLVEY 1103 (1458)
Q Consensus 1024 ~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~~~~~~~~~~y 1103 (1458)
.+.+++++||.-. |...+...+.+.+.... ....+|++++.+.......-+|. ..+.+-|+.. ..+.++
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~i~~~l~sR~-------~~i~~~~~~~--~~~~~~ 198 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPIIAPIKSQC-------LLIRCPAPSD--SEISTI 198 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCSSCHHHHTTS-------EEEECCCCCH--HHHHHH
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCC-CCCCCEEEECCCCCHHHHHHCCH-------HEEEECCCCH--HHHHHH
T ss_conf 8724999424333-45431112210022135-66430001021110025442100-------0243035330--468999
Q ss_pred HHHC
Q ss_conf 9839
Q 000506 1104 FEAV 1107 (1458)
Q Consensus 1104 F~~~ 1107 (1458)
.+.+
T Consensus 199 l~~i 202 (252)
T d1sxje2 199 LSDV 202 (252)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.03 E-value=0.066 Score=25.41 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+|+|||||++-+.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.92 E-value=0.055 Score=25.91 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.+.+.||+|.||||+++.++...
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89967899989999999999998
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.88 E-value=0.074 Score=25.11 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=21.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 78099996579996447886050896
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
|--.++++|.+|+|||||++-+.+..
T Consensus 4 p~~ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 4 PELRLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp CEEEEEEECCTTTTHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 83799999989978999999997197
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.87 E-value=0.086 Score=24.73 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.+.++|.+|+|||||++.+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.65 E-value=0.099 Score=24.34 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579996447886050896
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.++++|.+|+|||||++-+.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999989989999999997098
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.64 E-value=0.17 Score=22.94 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=16.0
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 78478099996579996447886050
Q 000506 890 VFRPGVLTALMGVSGAGKTTLMDVLA 915 (1458)
Q Consensus 890 ~i~pGe~~ai~G~sGaGKTTLl~~L~ 915 (1458)
.+-.|+..+|.|++|+|||||+.-++
T Consensus 64 pigkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 64 PYAKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 63678877766799989899999999
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.58 E-value=0.094 Score=24.49 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999965799964478860508967
Q 000506 896 LTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
++.|-|.=||||||||+-|....+
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~~ 28 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQH 28 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCC
T ss_pred EEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899864888999999999985678
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=89.42 E-value=0.13 Score=23.60 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=24.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 4780999965799964478860508967
Q 000506 892 RPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 892 ~pGe~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
..+-.++++|.+.+|||||+|.|.|++.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 7752789986675443555425426615
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=89.34 E-value=0.13 Score=23.55 Aligned_cols=26 Identities=50% Similarity=0.781 Sum_probs=21.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999968999999954989
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
++. .+.+||.|+|||-|-+.||-.++
T Consensus 68 ~~n-iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 68 KSN-ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCC-EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 753-24418998637899999986443
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=89.00 E-value=0.13 Score=23.55 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+++|...+|||||++.|...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.95 E-value=0.15 Score=23.29 Aligned_cols=23 Identities=39% Similarity=0.757 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999968999999954989
Q 000506 199 TLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
.+++|+||.|||++..-|+-++.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39983587544799999999998
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.71 E-value=0.13 Score=23.58 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=24.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 6784780999965799964478860508
Q 000506 889 GVFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1458)
Q Consensus 889 ~~i~pGe~~ai~G~sGaGKTTLl~~L~g 916 (1458)
|-+..|.++.+.|++|+|||||.-.++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9866633699964887488999999999
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.60 E-value=0.16 Score=23.05 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=24.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 67838839999859999689999999549
Q 000506 191 GLVKPSRMTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 191 ~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
..+-.|+-.+|+|++|+|||||+.-++-.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 56367887776679998989999999998
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.47 E-value=0.15 Score=23.24 Aligned_cols=21 Identities=33% Similarity=0.456 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999689999999549
Q 000506 199 TLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
++++|..|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999999679
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=88.35 E-value=0.079 Score=24.96 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=21.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 388399998599996899999995498
Q 000506 194 KPSRMTLLLGPPGAGKTTLLMALAGKL 220 (1458)
Q Consensus 194 ~~Ge~~~ilGp~GsGKSTLL~~LaG~l 220 (1458)
..-.+..+.||+++|||||+++|+..+
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 761799998589887789999999983
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=88.28 E-value=0.15 Score=23.20 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999689999999549899
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLDD 222 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~~ 222 (1458)
...|=|+-||||||+++.|+-.+..
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999888778899999999998734
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=88.27 E-value=0.14 Score=23.34 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=24.2
Q ss_pred CCEEEEECCCCCCCHH---HHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 9597985799899999---9999999999998846966999980
Q 000506 360 AKVLLMDEISTGLDSS---TTFQICKYMKQMVHVLEITTIVSLL 400 (1458)
Q Consensus 360 ~~illlDEptsGLDs~---t~~~i~~~l~~~~~~~~~t~ii~i~ 400 (1458)
+-|||.||..+=+.+. ......+.|+..-......+|.+.+
T Consensus 116 ~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT 159 (387)
T d1qvra2 116 EVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATT 159 (387)
T ss_dssp SEEEEECCC-------------------HHHHHTTCCCEEEEEC
T ss_pred CEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECC
T ss_conf 66987240888842777877413899999997378851666368
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=88.16 E-value=0.15 Score=23.31 Aligned_cols=27 Identities=37% Similarity=0.463 Sum_probs=22.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 478099996579996447886050896
Q 000506 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 892 ~pGe~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
+|...+.++||+|+|||.|.+.|+...
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 876699997888624899999999983
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=88.16 E-value=0.12 Score=23.92 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=21.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 47809999657999644788605089
Q 000506 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 892 ~pGe~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
+|.--+|++|.-++|||||++.|.+.
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 99718999958898099999999999
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=88.12 E-value=0.15 Score=23.28 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999968999999954989
Q 000506 198 MTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
.+.|=|+-|+||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989867789999999999817
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.78 E-value=0.14 Score=23.44 Aligned_cols=84 Identities=6% Similarity=0.043 Sum_probs=47.7
Q ss_pred HHCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH-CEEEEEECCCEEEEECCCCCC-HHH
Q ss_conf 5199789993999999-9999999999999987579989999358509999863-618899259399994799742-378
Q 000506 1023 VANPSIIFMDEPTSGL-DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELLLMKRGGQVIYAGPLGRQ-SQK 1099 (1458)
Q Consensus 1023 v~~p~il~LDEPTsGL-D~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~f-D~illl~~gG~~~y~G~~~~~-~~~ 1099 (1458)
..+.++|++|+--.=. +......+..++......|+.+|+|+..|..++-..- |-.--+. .|.++.-.|..+. ..-
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~-~g~~~~i~p~d~~~~~i 173 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFE-GGILVEIELDNKTRFKI 173 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHH-TSEEEECCCCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCHHHHHHHH-CCEEEEECCCCHHHHHH
T ss_conf 76213010112655058657788999999987631663899548751001343267888861-85689978882799999
Q ss_pred HHHHHHHC
Q ss_conf 99999839
Q 000506 1100 LVEYFEAV 1107 (1458)
Q Consensus 1100 ~~~yF~~~ 1107 (1458)
+..++...
T Consensus 174 L~~~a~~r 181 (213)
T d1l8qa2 174 IKEKLKEF 181 (213)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
T ss_conf 99999982
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=87.70 E-value=0.14 Score=23.35 Aligned_cols=19 Identities=37% Similarity=0.635 Sum_probs=15.6
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 8839999859999689999
Q 000506 195 PSRMTLLLGPPGAGKTTLL 213 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL 213 (1458)
.|+..+..|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEECCCCCCCCCCC
T ss_conf 9988999736879814221
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.53 E-value=0.2 Score=22.41 Aligned_cols=31 Identities=35% Similarity=0.602 Sum_probs=27.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6783883999985999968999999954989
Q 000506 191 GLVKPSRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 191 ~~i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
|=++.|++|.+-||+|||||||...++....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9866754789805876522799999999997
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=87.46 E-value=0.15 Score=23.22 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=20.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 478099996579996447886050896
Q 000506 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 892 ~pGe~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
.|+. ..++||+|+|||-|-+.||...
T Consensus 67 p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 67 SKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCC-EEEECCCCCCHHHHHHHHHHHC
T ss_conf 8753-2441899863789999998644
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=87.45 E-value=0.16 Score=23.01 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=17.0
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 38839999859999689999
Q 000506 194 KPSRMTLLLGPPGAGKTTLL 213 (1458)
Q Consensus 194 ~~Ge~~~ilGp~GsGKSTLL 213 (1458)
+.|+..+..|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.43 E-value=0.13 Score=23.67 Aligned_cols=27 Identities=26% Similarity=0.128 Sum_probs=23.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 780999965799964478860508967
Q 000506 893 PGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 893 pGe~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
.+.++.+.||+|+|||++-.+|++...
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 767699989999888999999999859
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.35 E-value=0.18 Score=22.76 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=10.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999968999999954
Q 000506 199 TLLLGPPGAGKTTLLMALAG 218 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~LaG 218 (1458)
++++|..|+|||||++-+..
T Consensus 5 ivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999888999998840
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.20 E-value=0.17 Score=22.89 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999644788605089
Q 000506 896 LTALMGVSGAGKTTLMDVLAGR 917 (1458)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1458)
.+.++|.+|+|||||+.-+...
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999999679
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.77 E-value=0.19 Score=22.67 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=23.4
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83883999985999968999999954989
Q 000506 193 VKPSRMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 193 i~~Ge~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
-.|.-..++.||||+|||.|-++||+++.
T Consensus 120 ~~~~g~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 120 RYASGMVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEESEEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 36886388877998508899999999863
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.47 E-value=0.2 Score=22.46 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099996579996447886050896
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~~ 918 (1458)
..++|=|.-||||||+++.|+-..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.17 E-value=0.22 Score=22.24 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999859999689999999549
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
.+.+|.|+.||||||..+.|+..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=86.16 E-value=0.19 Score=22.56 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=10.4
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999859999689999999
Q 000506 199 TLLLGPPGAGKTTLLMAL 216 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~L 216 (1458)
.+++|+.++|||||+..|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHH
T ss_conf 999952798999999999
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=86.12 E-value=0.099 Score=24.33 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 0999965799964478860508967
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
.-+.|.|+.|+|||||.+.+++..+
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7089988998529999999987379
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.64 E-value=0.15 Score=23.30 Aligned_cols=58 Identities=16% Similarity=0.343 Sum_probs=25.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 24699988789889899999999951997899939999999999999999999987579989999358
Q 000506 999 MVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066 (1458)
Q Consensus 999 ~vg~~~~~glSgGqrkRl~ia~~Lv~~p~il~LDEPTsGLD~~sa~~i~~~l~~~~~~g~tvi~t~Hq 1066 (1458)
++..||...++++-..=+. +.+--+++. .+..|+-+.+...+..+. ..+..+++.+..
T Consensus 100 liDtPGh~dF~~ev~~al~-----~~D~allVV-da~eGv~~qT~~~~~~a~----~~~~p~i~viNK 157 (341)
T d1n0ua2 100 LIDSPGHVDFSSEVTAALR-----VTDGALVVV-DTIEGVCVQTETVLRQAL----GERIKPVVVINK 157 (341)
T ss_dssp EECCCCCCSSCHHHHHHHH-----TCSEEEEEE-ETTTBSCHHHHHHHHHHH----HTTCEEEEEEEC
T ss_pred EECCCCCHHHHHHHHHHHH-----HCCCEEEEE-ECCCCCCHHHHHHHHHHH----HCCCCEEEEEEC
T ss_conf 9737873889999998875-----237249998-656682046999999998----769986999877
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=85.62 E-value=0.24 Score=22.03 Aligned_cols=20 Identities=45% Similarity=0.694 Sum_probs=17.1
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 38839999859999689999
Q 000506 194 KPSRMTLLLGPPGAGKTTLL 213 (1458)
Q Consensus 194 ~~Ge~~~ilGp~GsGKSTLL 213 (1458)
+.|...+..|-||+|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88987999736778812051
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.48 E-value=0.23 Score=22.07 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHH---CCCC
Q ss_conf 9998599996899999995---4989
Q 000506 199 TLLLGPPGAGKTTLLMALA---GKLD 221 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~La---G~l~ 221 (1458)
.+|+|+.++|||||+.+|. |.+.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~ 45 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIIS 45 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 99996888869999999999779866
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.19 E-value=0.23 Score=22.06 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 0999965799964478860508967
Q 000506 895 VLTALMGVSGAGKTTLMDVLAGRKT 919 (1458)
Q Consensus 895 e~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1458)
.-..|+|++|.|||++..-|+.+..
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8967988898867799999999998
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=83.64 E-value=0.31 Score=21.26 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=9.3
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999859999689999999
Q 000506 199 TLLLGPPGAGKTTLLMAL 216 (1458)
Q Consensus 199 ~~ilGp~GsGKSTLL~~L 216 (1458)
.+++|+.++|||||+..|
T Consensus 6 i~viGHVd~GKTTL~~~L 23 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRL 23 (224)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHH
T ss_conf 999944799999999999
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.56 E-value=0.39 Score=20.71 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=14.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998599996899999995
Q 000506 198 MTLLLGPPGAGKTTLLMALA 217 (1458)
Q Consensus 198 ~~~ilGp~GsGKSTLL~~La 217 (1458)
-.+++|+.++|||||...|.
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 79999478998999999999
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=83.14 E-value=0.2 Score=22.43 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEECCEEEEEECCCCCCHHH-HH-HHHH
Q ss_conf 78388399998599996899-99-9995
Q 000506 192 LVKPSRMTLLLGPPGAGKTT-LL-MALA 217 (1458)
Q Consensus 192 ~i~~Ge~~~ilGp~GsGKST-LL-~~La 217 (1458)
.+++|+.++|.+|.|||||+ ++ .++.
T Consensus 5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~ 32 (305)
T d2bmfa2 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVR 32 (305)
T ss_dssp SSSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 8646994999979999787999999999
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.09 E-value=0.29 Score=21.46 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=19.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 678478099996579996447886050
Q 000506 889 GVFRPGVLTALMGVSGAGKTTLMDVLA 915 (1458)
Q Consensus 889 ~~i~pGe~~ai~G~sGaGKTTLl~~L~ 915 (1458)
..+..|+..+|.|++|+|||+|+.-++
T Consensus 63 ~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 63 VPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 676678778765688888589999999
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=82.55 E-value=0.29 Score=21.46 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999968999999954989
Q 000506 197 RMTLLLGPPGAGKTTLLMALAGKLD 221 (1458)
Q Consensus 197 e~~~ilGp~GsGKSTLL~~LaG~l~ 221 (1458)
....+.||+++|||++..+|+..+.
T Consensus 54 n~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 54 NCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1899988998568999999999828
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.96 E-value=0.53 Score=19.86 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=13.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8839999859999689999999549
Q 000506 195 PSRMTLLLGPPGAGKTTLLMALAGK 219 (1458)
Q Consensus 195 ~Ge~~~ilGp~GsGKSTLL~~LaG~ 219 (1458)
+|.+.+++||=.|||||-|--.+-+
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~~~ 25 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRVRR 25 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 9479999914167899999999999
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=80.75 E-value=0.36 Score=20.87 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=14.5
Q ss_pred EEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 784780999965799964478860
Q 000506 890 VFRPGVLTALMGVSGAGKTTLMDV 913 (1458)
Q Consensus 890 ~i~pGe~~ai~G~sGaGKTTLl~~ 913 (1458)
.+..|+..+|.|++|+|||+|+..
T Consensus 63 pig~GQr~~Ifg~~g~GKt~l~~~ 86 (276)
T d1fx0a3 63 PVGRGQRELIIGDRQTGKTAVATD 86 (276)
T ss_dssp CCBTTCBCBEEESSSSSHHHHHHH
T ss_pred CCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 546776676006778885799999
|